Rank ID Name RegType AnnoChrom Start End Strand ScorePerCodon NumCodons Bls AntiScorePerCodon ScoreDiff OverlapTrs Parent CodAlignView UCSCview SvmScore NewSvmScore SvmAntisenseScore Start19 End19 CodAlignView19 UCSCview19 TrypticAAs OtherStatus OtherIDs OtherNames OtherRanks MinOtherRank RankChange OutOfOrfCodons Cluster ClusterStart ClusterEnd BestInCluster ClusterBestRank ClusterRanks ClusterUCSCview RToverlap GC CpGratio ScorePerCodonMle_hg38_58 BlsMle_hg38_58 AntiScorePerCodonMle_hg38_58 ScoreDiffMle_hg38_58 NewSvmScoreMle_hg38_58 SvmAntisenseScoreMle_hg38_58 RankMle_hg38_58 BestInClusterMle_hg38_58 ClusterBestRankMle_hg38_58 ClusterRanksMle_hg38_58 ScorePerCodonMle_hg38_100 BlsMle_hg38_100 AntiScorePerCodonMle_hg38_100 ScoreDiffMle_hg38_100 NewSvmScoreMle_hg38_100 SvmAntisenseScoreMle_hg38_100 RankMle_hg38_100 BestInClusterMle_hg38_100 ClusterBestRankMle_hg38_100 ClusterRanksMle_hg38_100 CodingCollisionFrac_hg38_58 CodingCollisionCDS_hg38_58 CodingCollisionFrac_hg38_100 CodingCollisionCDS_hg38_100 AllOverlapTrs OverlapTypes AnnotationCategory AnnotationNotes 1 514813 chr16:71430668-71430742- NoOverlap chr16 71430668 71430742 - 3.95998802185 25 0.892409246967 -14.2218079805 18.1817960024 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;71430667;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A71430668-71430742-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A71430668-71430742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.284399066703 1.34848196433 0.96964692644 71464571 71464645 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;71464570;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A71430668-71430742-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A71464571-71464645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MQDWSLASHLFVPSPGSYFVTAIDTRLSGLEAPSLQKLFQVLDTEGCPNPGTGSL Same 516464 chr16:71430668-71430742- 1 1 0 0 1 71430668 71432325 Best 1 1;1232;1578;61319 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:71430668-71432325&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52 0.802139037433 10.509012 0.9228 -11.815584 22.324596 0.936489217301 0.943035291739 1161 1080 1080;1161;1704;2373 12.654764 0.4372 -12.665364 25.320128 0.888531622917 1.06342589173 2160 1234 1234;1500;2160;2283 0.0 0.230672801484 chr19:3000647-3000723- ENST00000561754.1,ENST00000572770.2 NC,NCintron protein-coding gene protein-coding gene ENSG00000260734 2 474894 chr1:171577592-171577645- NoOverlap chr1 171577592 171577645 - 5.07276657555 18 0.997222010291 -12.7794164684 17.852183044 ENST00000338920.8,ENST00000367742.7,ENST00000426496.6,ENST00000495585.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;171577591;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A171577592-171577645-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A171577592-171577645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.214943885007 1.28149521408 0.958357167532 171546731 171546784 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;171546730;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A171577592-171577645-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A171546731-171546784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NITCCRLRHINLRILLLLGNK Same 476773 chr1:171577592-171577645- 8 8 -6 0 2 171577592 171591667 Best 2 2;11714;71298 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:171577592-171591667&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.462962962963 0.346153846154 7.97622222222 0.9844 -16.3220055556 24.2982277778 0.744065832291 0.956158897226 1903 Best 1903 1903;8078;54923 -1.09861111111 0.9055 -35.5810833333 34.4824722222 0.477329213517 0.97527159328 3627 Best 3627 3627;36080;44698 0.0 0.0 ENST00000338920.8 AntiCDS not annotated potentially spurious 3 472835 chr1:70039113-70039160- NoOverlap chr1 70039113 70039160 - 4.11154359579 16 0.903880560006 -14.3788064122 18.490350008 ENST00000035383.9,ENST00000310961.9,ENST00000415775.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;70039112;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A70039113-70039160-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A70039113-70039160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00637117569397 1.2360099491 0.954718817787 70504796 70504843 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;70504795;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A70039113-70039160-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A70504796-70504843&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WVSSVSSRTNQILGDVFAGLLHVLGIVLK Same 474714 chr1:70039113-70039160- 5 5 -2 0 3 70039113 70043935 Best 3 3;16752;69498 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:70039113-70043935&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.458333333333 0.396694214876 -1.3500375 0.9985 -21.1567 19.8066625 0.395290048926 0.989969205292 4066 Best 4066 4066;8099;16037 -19.169775 0.92 -50.09031875 30.92054375 0.0781881927401 0.945811114482 14040 11883 11883;14040;66705 0.0 0.0 ENST00000035383.9 AntiCDS not annotated potentially spurious 4 483410 chr11:5403045-5403164+ NoOverlap chr11 5403045 5403164 + 6.40980244353 40 0.88889906157 -11.8772275057 18.2870299492 ENST00000332043.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;5403044;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A5403045-5403164%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A5403045-5403164&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.946223948343 1.22182456343 1.11407423395 5424275 5424394 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;5424274;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A5403045-5403164%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A5424275-5424394&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFGTGAIIVLKSIMLMAPLPILLWRLPFCGHNALSHSYCLHPNLIYLVGTFLLTISMGFSLLPLLLGWIR Same 485342 chr11:5403045-5403164+ 6 6 -2 0 4 5402904 5403164 Best 4 4;314 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:5402904-5403164&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.526315789474 15.8826775 0.9887 -16.8296625 32.71234 1.06321586232 1.39687999841 120 Best 120 120;380 38.6344875 0.9165 -33.3102125 71.9447 0.885383226609 1.28272987577 2176 922 922;2176 0.0547363034851 chr11:5440570-5441514- 0.252099705635 chr11:5820336-5821301+ ENST00000332043.1,ENST00000380252.5,ENST00000380237.5,ENST00000415970.5 CDS,AntiCDSintron,AntiUTR5intron,AntiNCintron pseudogene OR51J1 protein-coding gene switched to pseudogene (ENSG00000184321) 5 588818 chr9:35303926-35304027+ NoOverlap chr9 35303926 35304027 + 6.3864323098 34 0.911649365629 -8.55747953715 14.9439118469 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35303925;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35303926-35304027%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35303926-35304027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.887286965141 1.21918352859 0.910783505992 35303923 35304024 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35303922;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35303926-35304027%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35303923-35304024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MDENFVFSSFGYEYQEWLSCLEHGVWWPSEDGDYGYYMFHDGQYIYSLLTDSTGQYAYLFIPDSYQEYLDCDLQTNGLSSITLDDSIISACSFK Same 589761 chr9:35303926-35304027+ 7 7 -2 0 5 35300167 35307879 Best 5 5;669;1004;1082;1090;2464;3976;4603;5133;9301;65975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35300167-35307879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.401960784314 0.0 6.16770588235 1.0 -11.8404470588 18.0081529412 1.02103509955 0.929273760932 565 Best 565 565;1736;1846;2357;2445;2557;2989;3035;3218;3591;8325 27.4004382353 0.9299 -9.60627058824 37.0067088235 1.00278999308 0.943805876637 1067 420 420;802;1067;1389;1934;2365;2375;2403;2753;3466;5635 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron coding exon(s) UNC13B cassette exon 6 494072 chr12:2849327-2849434- NoOverlap chr12 2849327 2849434 - 8.01721945436 36 0.962959572069 -9.1395054741 17.1567249285 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2849326;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2849327-2849434-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2849327-2849434&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01994909962 1.21769526241 1.0232545861 2958493 2958600 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2958492;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2849327-2849434-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2958493-2958600&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWPCPNPLPHYQEKVLKLALLPSAPLSQDLIRDFQTLIK Same 496066 chr12:2849327-2849434- 12 12 -6 0 6 2849327 2855413 Best 6 6;133;515;985;1632;2840;5109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2849327-2855413&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.592592592593 0.225 11.8024944444 0.9948 -9.90915833333 21.7116527778 1.09012743213 0.937435569364 26 Best 26 26;270;287;599;1474;2001;2776 14.205925 0.4237 -14.619 28.824925 1.065945701 0.99774559304 189 Best 189 189;675;1206;2115;2904;3470;3931 0.0 0.0 ENST00000537710.5 AntiNCintron protein-coding gene protein-coding gene ENSG00000283297 7 595166 chrX:50607740-50607787+ NoOverlap chrX 50607740 50607787 + 5.60939992778 16 0.901047150378 -15.0537063405 20.6631062683 ENST00000289292.11,ENST00000376020.6,ENST00000460112.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;50607739;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A50607740-50607787%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A50607740-50607787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.255081394531 1.20566518306 1.0540840104 50350740 50350787 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;50350739;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A50607740-50607787%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A50350740-50350787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TEILGWQLLFLLLCLLLLLFLFLFFFFFLLLLLLLLLLLLLLLLLLLGCTK Same 595808 chrX:50607740-50607787+ 9 9 -2 0 7 50607740 50607787 Best 7 7 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:50607740-50607787&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.0 13.35354375 0.9751 -24.7885375 38.14208125 0.499660143452 1.15402494693 3151 Best 3151 3151 11.4300375 0.3801 -26.6023125 38.03235 0.548520436008 0.901674207802 3354 Best 3354 3354 0.0 0.0136957708806 chrX:153505238-153505401+ ENST00000289292.11 AntiCDS not annotated potentially spurious 8 560395 chr4:154492320-154492352+ NoOverlap chr4 154492320 154492352 + 6.22593626922 11 0.978326640171 -14.8643727519 21.0903090211 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;154492319;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A154492320-154492352%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A154492320-154492352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0487835358271 1.19682725835 1.02433552539 155413472 155413504 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;155413471;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A154492320-154492352%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A155413472-155413504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSRPQRKDRWSQRPMHSWGQDGFK Same 561379 chr4:154492320-154492352+ 80 80 -72 0 8 154492320 154492352 Best 8 8 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:154492320-154492352&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.636363636364 0.951923076923 2.68065454545 0.9105 -16.0888454545 18.7695 0.26150865595 0.990347692882 6612 Best 6612 6612 -2.44540909091 0.4093 -21.2971181818 18.8517090909 0.134990380764 1.00195457416 8821 Best 8821 8821 0.0 0.0 not annotated putative regulatory region 9 523250 chr17:76307579-76307704- NoOverlap chr17 76307579 76307704 - 3.50521657155 42 0.682074645682 -11.6852072761 15.1904238477 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;76307578;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A76307579-76307704-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A76307579-76307704&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.289538874587 1.19451115696 0.881810969907 74303660 74303785 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;74303659;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A76307579-76307704-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A74303660-74303785&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVGQAPSSALESQVKDLGGQVEDLSKQLKRVDGQVQGIATHVQHFSQASGLDLAALEWPEEQEVGVR Same 524685 chr17:76307579-76307704- 4 4 5 0 9 76307579 76307992 Best 9 9;250 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:76307579-76307992&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.507188039103 8.9976452381 0.9476 -21.8131952381 30.8108404762 1.07362407693 1.38890582996 64 Best 64 64;289 6.35488809524 0.456 -26.4776809524 32.8325690476 1.03509917557 0.898043849213 556 475 475;556 0.0 0.0 ENST00000262765.9 UTR5 coding exon(s) QRICH2 large 5' extension to first exon 10 539486 chr2:88857382-88857516- NoOverlap chr2 88857382 88857516 - 4.58140005531 45 0.788872443054 -12.5952179907 17.176618046 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;88857381;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88857382-88857516-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A88857382-88857516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.649043982172 1.19249087918 1.00033757496 89156895 89157029 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;89156894;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88857382-88857516-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A89156895-89157029&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR None NA NA 0 10 88857382 88861919 Best 10 10;114;2592;3402;9296 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:88857382-88861919&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.577777777778 0.545454545455 15.2457911111 0.9865 -18.9659244444 34.2117155556 1.07081953282 1.5142080759 79 Best 79 79;1171;1739;3460;3823 30.0022844444 0.7352 -27.7671066667 57.7693911111 0.982399323969 1.04050533251 1387 216 216;1028;1387;2681;2825 0.0 0.221184987352 chr22:22895375-22895694+ ENST00000377423.5,ENST00000624935.3 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 11 553202 chr3:120366639-120366722+ NoOverlap chr3 120366639 120366722 + 7.90683582425 28 0.933576387754 -8.55633551308 16.4631713373 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;120366638;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120366639-120366722%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A120366639-120366722&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.917822177653 1.18701891958 0.963015153679 120085486 120085569 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;120085485;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120366639-120366722%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A120085486-120085569&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YLDFFEVFSKLVYQFHNNTEQLEDQNSLYEGRVSVDQAEISEGTLSLLLR None NA NA 0 11 120366477 120368084 Best 11 11;568;909;1181;1188;1356;8610 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:120366477-120368084&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.392857142857 0.315789473684 9.70496428571 0.9472 -5.65034285714 15.3553071429 0.961216784568 1.01062529218 1029 Best 1029 1029;1399;2108;2270;2767;2983;4768 16.8362071429 0.4988 -8.86291428571 25.6991214286 1.02576023101 1.05282465345 683 Best 683 683;1974;2462;2559;2585;3123;3204 0.0 0.0 ENST00000494869.1 NC pseudogene unitary pseudogene ENSG00000240661 12 490520 chr12:6667963-6668028+ NoOverlap chr12 6667963 6668028 + 4.5878136666 22 0.817271132011 -15.616981844 20.2047955106 ENST00000319770.7,ENST00000355772.8,ENST00000361959.7,ENST00000396801.7,ENST00000545946.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;6667962;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A6667963-6668028%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A6667963-6668028&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.306503260975 1.1809122072 1.0674832134 6777129 6777194 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;6777128;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A6667963-6668028%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A6777129-6777194&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLGGLGLGLGLSLSLSLGLSLSLGLGHCCR Same 492496 chr12:6667963-6668028+ 2 2 10 0 12 6667963 6700148 Best 12 12;12158;18552;20045;33854;38909;39562;56088 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:6667963-6700148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.712121212121 0.0 3.49615909091 0.8203 -32.7506954545 36.2468545455 0.558074083211 1.20476934799 2774 Best 2774 2774;6809;9420;13385;14558;25605;62765;71889 -1.91325909091 0.5186 -42.26555 40.3522909091 0.62862883904 0.80087103179 3069 Best 3069 3069;6299;29969;40306;41399;41916;69914;73517 0.0 0.0 ENST00000396799.3,ENST00000319770.7 NC,AntiCDS not annotated potentially spurious 13 486986 chr11:5514607-5514705- NoOverlap chr11 5514607 5514705 - 6.73047568536 33 0.887502167475 -7.30329085271 14.0337665381 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;5514606;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A5514607-5514705-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A5514607-5514705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.912258017487 1.17672067277 0.909956262319 5535837 5535935 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;5535836;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A5514607-5514705-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A5535837-5535935&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QMDSLQAMGFGNHHANLQALIATEGDTNAAIRKLKRSQR Same 488953 chr11:5514607-5514705- 10 10 3 0 13 5514607 5515011 Best 13 13;1076;1994 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:5514607-5515011&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.535353535354 0.14347826087 6.91109090909 0.94 -15.8179666667 22.7290575758 1.03210199684 0.917391503331 457 Best 457 457;1296;21032 17.9365757576 0.5303 -13.3900424242 31.3266181818 1.07159176019 0.971627167157 162 Best 162 162;2018;2840 0.0 0.316166253771 chr1:156036978-156037130- ENST00000380184.1,ENST00000380259.6 UTR3,UTR5intron pseudo-exon UBQLNL 3' UTR signal; this is CDS in the parent of this retrogene 14 523267 chr17:76569085-76569633- NoOverlap chr17 76569085 76569633 - 8.43773771413 183 0.502345011488 1.0294458564 7.40829185773 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;76569084;549;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A76569085-76569633-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A76569085-76569633&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.12944815906 1.17265421131 1.0638531472 74565167 74565715 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;74565166;549;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A76569085-76569633-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A74565167-74565715&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASPTPMSSPSHTPNPSPTQSPSQSRSNNIVTPPGQQPAPSPSPTRGSSSRPPSHPPTPNASQPSSRTSSLNPSPQVQHVPRGAAQTPTPPTSKSPSQSGFKSLSRNPSLTPAVPPKSSFYSPATSSSYIGPIQNIPSYITPYVPRFLKEPPFFQPPTAPLPQNPCFACPSPCPARKPPPPPDSLYLPLLPPPPHHPQFNCPFPTPPGLFMPPSSLSYTPPVEVLVSGKPHVVPNVLPATFYTPFSR None NA NA 0 14 76568812 76569633 Best 14 14;165;11638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:76568812-76569633&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.633879781421 0.442456479691 22.5269814208 0.8973 6.78306666667 15.7439147541 0.981046770113 1.04241454813 894 381 381;894;3731 20.9673885246 0.4874 2.40450765027 18.5628808743 1.03836556062 1.01358782827 501 23 23;501;4311 0.0 0.00332888188898 chr17:76570565-76570668- ENST00000589997.1,ENST00000225276.9,ENST00000585390.1 NC,CDSintron,NCintron protein-coding gene protein-coding gene ENSG00000284526 15 534962 chr2:126899522-126899581+ NoOverlap chr2 126899522 126899581 + 4.25197504759 20 0.815594720378 -16.4334400177 20.6854150653 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;126899521;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A126899522-126899581%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A126899522-126899581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.181742288494 1.16646753709 1.06515579538 127657098 127657157 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;127657097;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A126899522-126899581%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A127657098-127657157&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPNLEQVVTLNTPSLLLYPDKTVLLEEIYTHKNLFTERLNK Same 536315 chr2:126899522-126899581+ 3 3 12 0 15 126898979 126899581 Best 15 15;323 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:126898979-126899581&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.384615384615 1.069615 0.8173 -22.727675 23.79729 0.575588071814 0.925787027528 2673 870 870;2673 0.38983 0.2918 -24.740685 25.130515 0.44661867871 1.10031251177 3747 897 897;3747 0.0 0.0 ENST00000441412.2 NC protein-coding gene protein-coding gene ENSG00000237524 16 500704 chr14:22071088-22071201+ NoOverlap chr14 22071088 22071201 + 6.0223998647 38 0.925656439106 -6.74570536064 12.7681052253 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22071087;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22071088-22071201%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22071088-22071201&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.883088945002 1.16243154321 0.908597867325 22539351 22539464 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22539350;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22071088-22071201%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22539351-22539464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CNFSDSVNNLQWFHQNPWGQLINLFYIPSGTKQNGRLSATTVATERYSLLYISSSQTTDSGVYFCAVEPQCSPGTCGLYTNPHPGSVPLPVTTTSR None NA NA 0 16 22071088 22071201 Best 16 16 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22071088-22071201&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.473684210526 0.95 7.67198157895 0.882 -6.43516315789 14.1071447368 0.982578978085 1.01816605015 883 Best 883 883 9.62622368421 0.3997 -8.80504210526 18.4312657895 0.890978244866 1.06274417715 2151 Best 2151 2151 0.0 0.0 ENST00000390450.3 NC immunoglobulin segment overlaps an immunoglobulin region 17 518788 chr17:63862742-63862810+ NoOverlap chr17 63862742 63862810 + 6.78582186284 23 0.897067282335 -10.0239653043 16.8097871672 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;63862741;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A63862742-63862810%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A63862742-63862810&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.689644670065 1.1589302102 0.957530456768 61940102 61940170 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;61940101;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A63862742-63862810%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A61940102-61940170&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGPGGLGWVILVLSDFPNSIFCAWAGLDEGISSTLFVIITVALGVGVITIALYLSYRPCK Same 520195 chr17:63862742-63862810+ 15 15 2 0 17 63862742 63862810 Best 17 17 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:63862742-63862810&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.463768115942 0.27380952381 2.03688695652 0.9746 -12.6503304348 14.6872173913 0.591392536038 1.06242250191 2592 Best 2592 2592 2.03688695652 0.3046 -12.6503304348 14.6872173913 0.31760233384 0.977845927705 4468 Best 4468 4468 0.0 0.0 ENST00000476374.1 NC pseudogene extension TCAM1P 3' extension (ENSG00000240280) 18 527004 chr19:6411844-6411915+ NoOverlap chr19 6411844 6411915 + 6.02014997602 24 0.933438239109 -8.91330420971 14.9334541857 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;6411843;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6411844-6411915%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A6411844-6411915&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.617561390861 1.15673700889 0.924800513272 6411855 6411926 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;6411854;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6411844-6411915%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A6411855-6411926&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADDSELAIHQRLDTHYTLCEPVLTYQRNNLL*NVGAPR Same 528450 chr19:6411844-6411915+ 22 22 -4 2 18 6396383 6424885 Best 18 18;152;1552;1681;2470;11355;12316;12885;15770;20124;36825 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:6396383-6424885&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 1.02272727273 8.27381666667 0.928 -12.5594708333 20.8332875 0.884876756843 0.928449989878 1347 228 228;1347;1830;2200;3049;3131;9882;24431;37923;50538;67562 16.0767333333 0.439 -15.7151666667 31.7919 0.903576381537 0.99246683339 2087 237 237;2087;2298;2594;2633;2795;14442;22727;50962;60088;60354 0.0 0.0 ENST00000596254.1 NC pseudogene unitary pseudogene ENSG00000214347 19 491117 chr12:40569707-40569799+ NoOverlap chr12 40569707 40569799 + 8.06936771266 31 0.918898298619 -6.69843872516 14.7678064378 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40569706;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40569707-40569799%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40569707-40569799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.986128795049 1.1557222217 0.927978073845 40963509 40963601 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40963508;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40569707-40569799%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40963509-40963601&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NNCRSSLVNVTVIYSGCKKRVQMAKCTGECEKTAK Same 493094 chr12:40569707-40569799+ 18 18 1 0 19 40565645 40570604 Best 19 19;175;252;1193;1558 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40565645-40570604&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.408602150538 0.0 11.0970387097 0.9436 -5.94692258065 17.0439612903 1.03035969294 0.965473800486 478 121 121;362;478;1515;1847 13.2310354839 0.386 -6.34287741935 19.5739129032 0.901790355498 1.05449971404 2094 12 12;169;2094;3099;3273 0.0 0.0 ENST00000427572.2 NC known assembly issue MUC19 has a known sequence error; the CDS cannot yet be annotated 20 510873 chr16:21338933-21338971+ NoOverlap chr16 21338933 21338971 + 5.83683083608 13 0.905952779196 -16.0099230248 21.8467538609 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;21338932;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A21338933-21338971%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A21338933-21338971&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.134868639649 1.15348989614 1.0653936223 21350254 21350292 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;21350253;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A21338933-21338971%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A21350254-21350292&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VEPAPVIQSSDPTLIFIFLLFYAIATICFSFMVSTFFSR Same 512511 chr16:21338933-21338971+ 39 39 -19 0 20 21338456 21339031 Best 20 20;2929;4756 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:21338456-21339031&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.6 11.3840230769 0.84 -15.3943307692 26.7783538462 0.473526130044 0.994154883849 3325 Best 3325 3325;3625;4234 17.6609230769 0.4179 -18.1185 35.7794230769 0.566134313471 0.991866477276 3279 Best 3279 3279;3580;3652 0.0 0.323494785118 chr16:2317283-2317403- pseudogene ATP-binding cassette, sub-family A (ABC1), member 15 (Abca15) unprocessed pseudogene (ENSG00000189149) 21 546167 chr20:63931001-63931027- NoOverlap chr20 63931001 63931027 - 6.19408887625 9 0.949497723863 -18.1857669353 24.3798558116 ENST00000360864.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;63931000;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A63931001-63931027-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A63931001-63931027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.06543788675 1.15279676518 1.06265183083 62562354 62562380 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;62562353;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A63931001-63931027-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A62562354-62562380&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALTPLVRLQLCLQILGGHVELR Same 547580 chr20:63931001-63931027- 519 519 -498 0 21 63931001 63931027 Best 21 21 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:63931001-63931027&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.45 -6.19037777778 0.9497 -28.6438888889 22.4535111111 0.106028350396 0.981303168549 15244 Best 15244 15244 -22.3701222222 0.8391 -53.0430333333 30.6729111111 -0.0141034787985 0.843727247899 43673 Best 43673 43673 0.0 0.0 ENST00000360864.8,ENST00000470551.1 AntiCDS,AntiNC not annotated potentially spurious 22 557796 chr3:184499882-184499986- NoOverlap chr3 184499882 184499986 - 5.37424279505 35 0.854811278597 -7.17493699044 12.5491797855 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;184499881;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184499882-184499986-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A184499882-184499986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.750232238673 1.1489899978 0.922052527456 184217670 184217774 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;184217669;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184499882-184499986-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A184217670-184217774&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NMKLEQAVKALGSYVLALLMAAHIENKGTLEIRVRELFSVPPFLVSLVLTIK Same 558767 chr3:184499882-184499986- 13 13 9 0 22 184499610 184500370 Best 22 22;541;811;1939;2622;7155;17966 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:184499610-184500370&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.571428571429 0.234375 11.81734 0.99 -9.26752857143 21.0848685714 1.08597543219 0.929092289213 35 Best 35 35;97;1016;1294;1807;1985;2257 16.1022257143 0.4745 -10.0850885714 26.1873142857 1.08630298365 1.03721419465 96 17 17;96;2057;2581;2827;2852;3634 0.0 0.290463661349 chr1:182399664-182400485- ENST00000444495.1 AntiCDSintron pseudogene transmembrane epididymal protein 1 (TEDDM1) pseudogene (ENSG00000283625) 23 521487 chr17:41160014-41160169- NoOverlap chr17 41160014 41160169 - 4.81491542579 52 0.653973801433 -6.98252872546 11.7974441512 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;41160013;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A41160014-41160169-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A41160014-41160169&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.580422197064 1.14692485466 0.911268003997 39316266 39316421 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;39316265;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A41160014-41160169-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A39316266-39316421&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PICWQTTCYRTTCCHPSYCISSCCQPSCSISSSSSSSCCGFSCCRLSCCISSCCRPNCCQTMCCRPTCSSASCC Same 522907 chr17:41160014-41160169- 24 24 -1 0 23 41160014 41160169 Best 23 23 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:41160014-41160169&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.602564102564 0.0764705882353 7.75376153846 0.7007 -6.77840384615 14.5321653846 1.03475394936 0.978111783363 424 Best 424 424 6.47826538462 0.6232 -11.5999384615 18.0782038462 0.882927921841 1.07622131724 2187 Best 2187 2187 0.255501156216 chr17:41167585-41168172- 0.214830471625 chr17:41105389-41106021+ ENST00000390661.4 UTR3 pseudo-exon KRTAP4-4 has a premature termination codon compared to other family members, and this signal follows downstream 24 563854 chr5:35788837-35788944+ NoOverlap chr5 35788837 35788944 + 3.62713883983 36 0.968128989598 -9.59861674905 13.2257555889 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;35788836;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35788837-35788944%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A35788837-35788944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.39742284535 1.14589644405 0.900398503777 35788939 35789046 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;35788938;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35788837-35788944%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A35788939-35789046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLLHSIYHFYHNSPLHKSALRTAFKGLHLRPVMPSQIGDR Same 564842 chr5:35788837-35788944+ 73 73 -49 0 24 35787955 35790367 Best 24 24;33;42;72;207;789;797;872;1069;2173;48626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:35787955-35790367&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.259615384615 1.69668333333 0.9975 -11.3040277778 13.0007111111 0.746085166918 1.09094167904 1888 20 20;37;72;448;957;1150;1273;1329;1548;1888;12605 6.65099444444 0.6799 -16.3435555556 22.99455 0.904257199335 1.08729584373 2084 77 77;86;112;376;544;1371;1761;1786;2084;2608;14924 0.0 0.0 ENST00000506526.5,ENST00000356031.7,ENST00000510433.1 NC,CDSintron,AntiNCintron coding exon(s) SPEF2 5 consecutive coding exons including an alternative termination codon 25 508135 chr15:25679379-25679462- NoOverlap chr15 25679379 25679462 - 5.78276080638 28 0.894122006779 -7.95253579638 13.7352966028 ENST00000356865.10 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;25679378;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A25679379-25679462-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A25679379-25679462&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.698681864696 1.14516599397 0.921133228493 25924526 25924609 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;25924525;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A25679379-25679462-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A25924526-25924609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSLQMDKRDVDFLSSPTQADQDFKGQTTDYL Same 509854 chr15:25679379-25679462- 19 19 6 0 25 25679379 25679462 Best 25 25 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:25679379-25679462&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.607142857143 0.388888888889 12.2929035714 0.8885 -8.91838928571 21.2112928571 0.988993165555 0.940769029876 839 Best 839 839 7.16438214286 0.5458 -14.6247928571 21.789175 0.836932423766 1.0861360695 2360 Best 2360 2360 0.0 0.0 ENST00000356865.10,ENST00000555815.5 CDS,NC pseudo-exon ATP10A has a fameshift in the final exon leading to an alternative STOP in primates; maintained as coding on the basis that this is a minor disruption to the CDS 26 483274 chr11:1110137-1110292+ NoOverlap chr11 1110137 1110292 + 7.78847117006 52 0.55946528866 -3.98931343682 11.7777846069 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1110136;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1110137-1110292%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1110137-1110292&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.871311111012 1.14480733507 0.913252999156 1104045 1104200 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1104044;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1110137-1110292%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1104045-1104200&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSAKAQALDHSCSCCKEEKTSQREVVLSCPNGGSLTHTYTHIESCQCQDTVCGLPTGTSR Same 485204 chr11:1110137-1110292+ 40 40 -14 0 26 1074896 1110292 Best 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.634615384615 0.388704318937 19.3232961538 0.9417 -6.67826153846 26.0015576923 1.05405390414 1.12661127883 209 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 33.5065326923 0.7793 -17.5625057692 51.0690384615 1.03300495736 0.976065825144 584 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.064474801513 chr11:1200438-1200702+ 0.340721826246 chr11:1200438-1200702+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 27 491314 chr12:49032882-49033007+ NoOverlap chr12 49032882 49033007 + 3.15177850829 42 0.854287240188 -9.47363571007 12.6254142184 ENST00000301067.11 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;49032881;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49032882-49033007%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A49032882-49033007&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.34894140748 1.14054318017 0.906753530475 49426665 49426790 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49426664;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49032882-49033007%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49426665-49426790&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLLLLLKLLLLLLLLKLLLLKLLLLL*LLLLLLLKLLLLLQLLLLLK Same 493291 chr12:49032882-49033007+ 16 16 11 20 27 49020566 49033910 Best 27 27;1869;2293;3141;4665;5179;14171;29832;59889;70464 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:49020566-49033910&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539682539683 0.0 3.53525 0.874 -16.9962857143 20.5315357143 1.0377100769 0.876633491199 391 Best 391 391;2014;2802;4299;4455;6825;32787;42176;48473;48787 -4.42938095238 0.6726 -26.8473761905 22.4179952381 0.668688105393 1.13855326075 2935 2210 2210;2935;3946;7899;19234;24986;25843;31483;36637;57651 0.0 0.0866889061351 chr4:70158328-70158900+ ENST00000301067.11 AntiCDS not annotated potentially spurious 28 479244 chr10:122788225-122788353+ NoOverlap chr10 122788225 122788353 + 6.4638069175 43 0.883998076654 -5.91220710583 12.3760140233 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122788224;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122788225-122788353%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122788225-122788353&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.964497371281 1.13958679796 0.906617219509 124547741 124547869 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124547740;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122788225-122788353%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124547741-124547869&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVGGSGQCSGHGEVLHKGSWGTVCDDLWDLNEAEVVCQQLGCGK Same 481149 chr10:122788225-122788353+ 20 20 8 0 28 122749907 122802385 Best 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.604651162791 0.0954142011834 16.6285627907 0.9584 -4.42195581395 21.0505186047 1.05183219822 0.950828533259 233 Best 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 59.5484232558 0.9823 -3.64952093023 63.197944186 0.992940186047 0.996788289629 1226 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.141840473468 chr10:122630961-122631281+ 0.216991784819 chr12:7432416-7432736- ENST00000439464.6 NCintron pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 29 531463 chr19:45238527-45239048- NoOverlap chr19 45238527 45239048 - 10.6021557894 174 0.48053948535 6.26677302295 4.33538276642 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;45238526;522;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A45238527-45239048-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A45238527-45239048&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.1318660733 1.13589945146 0.945411725163 45741785 45742306 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;45741784;522;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A45238527-45239048-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A45741785-45742306&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPVKMPILKNLGVSDPKVPRAGTLPLRSSRNPFEEVSGLEEEEAGELGSLPNGTSCRRRATLEKLAGLAPFRLGWAPGRRAGSPGDGQPRSFLGRVLVPGIRRSSADFGLLARLHGTRAHGDEEAAGEAARRLAFLRLGRGSKPQRASLAERVVPAGEAAPEPPPKVPEPPKMKEPLSGESGALTLSWENPSAHVHPQPWWSQASYLSPSQLPPVTPTCNSHV Same 532935 chr19:45238527-45239048- 563 563 -534 0 29 45234195 45239048 Best 29 29;1927 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:45234195-45239048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.676245210728 0.470542785397 26.7687287356 0.8883 14.8009850575 11.9677436782 0.956821467778 1.02623364088 1051 Best 1051 1051;1433 29.3743114943 0.4311 14.1007413793 15.2735701149 0.97955712018 0.928448416557 1434 204 204;1434 0.0 0.0565607467495 chr1:145871982-145873985- ENST00000590022.1,ENST00000587566.5 NC,AntiUTR5intron coding exon(s) EXOC3L2 extended 5' by two coding exons 30 529648 chr19:3483197-3483376- NoOverlap chr19 3483197 3483376 - 9.35036168347 60 0.511736222375 0.517283326884 8.83307835658 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;3483196;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3483197-3483376-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A3483197-3483376&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.996968279822 1.13229369024 1.00849669276 3483195 3483374 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;3483194;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3483197-3483376-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A3483195-3483374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADTMPGLAAEGEAEGWSPSPPLYEEYRPPPLDSIRLPRYVLYLLLAALVVVAVAYAIVGHLIKDLAHDLAGELPPPKPSWGR Same 531111 chr19:3483197-3483376- 59 59 -29 0 30 3482828 3483376 Best 30 30;3789 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:3482828-3483376&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.716666666667 0.869565217391 23.2731916667 0.9422 1.33035666667 21.942835 0.995871231243 0.974234767481 780 Best 780 780;823 44.953665 0.8727 -3.24213166667 48.1957966667 1.01513726145 0.969166624767 846 Best 846 846;1920 0.0 0.0497093551787 chr1:39491992-39492325+ protein-coding gene protein-coding gene ENSG00000284638 31 585826 chr8:10498693-10498809- NoOverlap chr8 10498693 10498809 - 6.97577169003 39 0.796961889615 -5.19391017082 12.1696818609 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;10498692;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10498693-10498809-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A10498693-10498809&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.953941445762 1.12976946588 0.924419621619 10356203 10356319 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;10356202;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10498693-10498809-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A10356203-10356319&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GIGISPCFSCTNGSFLSLSENVQCGHRPAFPNSSWLPFHERLQVQNGECPWQVSIQMSR Same 586763 chr8:10498693-10498809- 21 21 10 0 31 10496192 10498809 Best 31 31;380;667;765;1871;8583 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:10496192-10498809&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.487179487179 0.576354679803 11.6416871795 0.9051 -5.66751794872 17.3092051282 1.0748076617 0.936960278911 61 Best 61 61;238;682;997;2094;6527 11.6927487179 0.359 -6.48287179487 18.1756205128 0.912733481215 1.05294297721 2041 24 24;1365;2041;2153;3654;11606 0.0744951186977 chr8:10529507-10529699+ 0.210865516228 chr8:10529507-10529699+ ENST00000523024.1 NC protein-coding gene protein-coding gene ENSG00000253649 32 553604 chr3:141685069-141685197+ NoOverlap chr3 141685069 141685197 + 6.84898375564 43 0.728855697559 -5.35406987092 12.2030536266 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;141685068;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141685069-141685197%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A141685069-141685197&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.904476455598 1.12912057339 0.912241555012 141403911 141404039 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;141403910;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141685069-141685197%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A141403911-141404039&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FGNEELESIFSGLENNQRLQGLSLRYCGLGPQSGLRLGSVISQSAIW Same 554553 chr3:141685069-141685197+ 23 23 9 0 32 141681521 141685950 Best 32 32;141;656 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:141681521-141685950&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.542635658915 0.320099255583 14.7244674419 0.9094 -2.83239534884 17.5568627907 1.06062104656 0.940606504637 145 Best 145 145;236;970 16.8281488372 0.4085 -5.54007209302 22.3682209302 1.1111688708 1.05222783621 33 Best 33 33;81;2337 0.0 0.0 ENST00000474979.3 NC pseudogene unitary pseudogene ENSG00000242104 33 563856 chr5:35789215-35789346+ NoOverlap chr5 35789215 35789346 + 7.84834999117 44 0.998384277659 -7.09105006538 14.9394000565 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;35789214;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35789215-35789346%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A35789215-35789346&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.016005067 1.12823183738 0.929616478405 35789317 35789448 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;35789316;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35789215-35789346%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A35789317-35789448&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELLESLLQADIVKFAHFLLDVMNVLSILSCVNKNRNSSIADIFATLESMLEMLQMYQTR Same 564844 chr5:35789215-35789346+ 195 195 -162 0 24 35787955 35790367 24 24;33;42;72;207;789;797;872;1069;2173;48626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:35787955-35790367&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.378787878788 0.0 9.52437045455 0.9991 -10.9489022727 20.4732727273 1.09315945449 0.899143965908 20 Best 20 20;37;72;448;957;1150;1273;1329;1548;1888;12605 16.0739681818 0.5939 -11.8489022727 27.9228704545 1.08385644101 0.997833619222 112 77 77;86;112;376;544;1371;1761;1786;2084;2608;14924 0.0 0.0 ENST00000506526.5,ENST00000356031.7,ENST00000510433.1 NC,CDSintron,AntiNCintron coding exon(s) SPEF2 5 consecutive coding exons including an alternative termination codon 34 531762 chr19:49018875-49019000- NoOverlap chr19 49018875 49019000 - 7.30387864297 42 0.805655647473 -8.43705709491 15.7409357379 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49018874;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49018875-49019000-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49018875-49019000&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00188034254 1.12648928128 0.954386550351 49522132 49522257 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49522131;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49018875-49019000-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49522132-49522257&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLCLGYASSPNLAQALIAWTKNPELSGRPFTVSDRGVLDRRQLYLTTSARDFRFYPK Same 533237 chr19:49018875-49019000- 14 14 20 0 33 49017965 49020515 Best 34 34;193;1195;1825;2425;7512;24256 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49017965-49020515&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.634920634921 0.966751918159 12.7555333333 0.9793 -14.7588285714 27.5143619048 1.09798458393 1.22074157451 18 Best 18 18;246;307;1538;2029;2679;3404 14.0259309524 0.3898 -15.0803238095 29.1062547619 1.09119473146 0.978530761523 76 Best 76 76;2096;2562;2564;4203;4229;5297 0.0 0.0740707109478 chr19:49867054-49867204- ENST00000600007.1 NC protein-coding gene protein-coding gene ENSG00000268655 35 577933 chr7:37796281-37796406+ NoOverlap chr7 37796281 37796406 + 8.2633642753 42 0.90514774003 -6.53236433651 14.7957286118 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;37796280;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796281-37796406%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A37796281-37796406&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07007675842 1.1259067575 0.926555713346 37835883 37836008 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;37835882;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796281-37796406%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A37835883-37836008&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSGSLDFFTCRVVSIIYGHMYFTFVFCVAIVIL*LLIYVKKLQMQQLQNYHVVVLSIIIWMVGCLIFVNFFFFFTVWHR Same 578972 chr7:37796281-37796406+ 29 29 6 15 34 37796070 37796888 Best 35 35;91;149;575;1403;9158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:37796070-37796888&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.357142857143 0.25 10.326402381 0.9707 -8.52294047619 18.8493428571 1.08702626957 0.904146704547 34 Best 34 34;142;466;1005;2248;12157 26.4659785714 0.6441 -9.27382619048 35.7398047619 1.0161682528 0.932964952156 833 146 146;436;833;961;1880;4101 0.0 0.379591286239 chr7:37740394-37741311+ ENST00000476620.1,ENST00000461610.5 UTR5intron,NCintron pseudogene unitary pseudogene ENSG00000283444 36 529184 chr19:51704033-51704185+ NoOverlap chr19 51704033 51704185 + 7.17216664757 51 0.659586480507 -3.75442737677 10.9265940243 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51704032;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51704033-51704185%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51704033-51704185&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.908360169453 1.12436427506 0.938315152172 52207286 52207438 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52207285;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51704033-51704185%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52207286-52207438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPQLRTQDLSYFRDMPRAEGYLARIRPAQLTHRGTFSCVIKQDQRPLARLYFFLNGGAGR Same 530643 chr19:51704033-51704185+ 37 37 -1 0 35 51689064 51704502 Best 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.627450980392 1.07936507937 13.5863823529 0.889 -4.12424705882 17.7106294118 1.05152377047 0.924572339346 243 Best 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 16.9008666667 0.369 -5.10169019608 22.0025568627 1.10487608654 1.04902124518 43 Best 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.0 ENST00000572160.5 NC protein-coding gene protein-coding gene ENSG00000182310 37 483242 chr11:1087983-1088129+ NoOverlap chr11 1087983 1088129 + 8.86728171001 49 0.620727045682 -2.0045265677 10.8718082777 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1087982;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1087983-1088129%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1087983-1088129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.997914841121 1.11927738511 0.948752221834 1085972 1086118 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1085971;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1087983-1088129%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1085972-1086118&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVIQRDEGHHVAYTTREVGQYLVVESSTGIIVIWDKRTTVFIKLAPSYKVGCLPACPAPSWPAPHPLPWCLQDKPLSSLQPLFGAPVMLVSCR Same 485172 chr11:1087983-1088129+ 47 47 -10 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.612244897959 0.510416666667 15.4823204082 0.9055 0.558457142857 14.9238632653 1.03583409187 0.978964093988 407 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 36.692555102 0.9252 -6.34 43.032555102 0.992865744901 0.943983628786 1227 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0869467134416 chr11:1025182-1025367- 0.295095717148 chr11:1177454-1177633+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 38 516423 chr17:8344931-8344999+ NoOverlap chr17 8344931 8344999 + 6.38138700568 23 0.830945959842 -12.8566740207 19.2380610264 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8344930;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8344931-8344999%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8344931-8344999&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.622048074316 1.11783910148 1.05532182834 8248249 8248317 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8248248;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8344931-8344999%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8248249-8248317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSFNLTLGLGLVLTIWLHLPYLPAVQK Same 517804 chr17:8344931-8344999+ 11 11 27 0 36 8344931 8344999 Best 38 38 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8344931-8344999&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.623188405797 0.319444444444 7.91866086957 0.9565 -13.9552304348 21.8738913043 0.872693818527 0.929000701866 1382 Best 1382 1382 7.67780434783 0.3302 -13.7043304348 21.3821347826 0.613747072913 1.07616235464 3127 Best 3127 3127 0.0 0.0 ENST00000328248.6 CDSintron coding exon(s) ODF4 cassette exon, actually causes NMD in human but codes all the way through in all other animals; a single nucleotide deletion (no SNP currently present in dbSNP) causes a frameshift. 39 628806 chr12:123762334-123762519+ Extension chr12 123762334 123762519 + 8.35551450417 62 0.570184855667 -0.259195177786 8.61470968195 chr12:123762334-123762579+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;123762333;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A123762334-123762519%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A123762334-123762519&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.987770793955 1.11607985498 1.01519388333 124246881 124247066 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;124246880;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A123762334-123762519%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A124246881-124247066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAMDDLRVLWMRDRVYAAFGITDPQLFEDLLNRDDGQGEDLILHFLNQASEEEGPSALFIYRTMVPEEVEVEIGEPR Same 629473 chr12:123762334-123762519+ 76 76 -37 0 37 123762213 123762579 Best 39 39;24095;62478 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:123762213-123762579&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.655913978495 1.00215517241 14.1602483871 0.9109 -2.74950483871 16.9097532258 0.979998690958 0.94095959798 899 Best 899 899;44723;45787 27.974733871 0.7006 -2.26806290323 30.2427967742 0.91917885184 1.00326518224 2014 Best 2014 2014;29676;44601 0.0 0.0 ENST00000409039.7,ENST00000614082.1 Extension5p,UTR5 coding exon(s) DNAH10 5' extension 40 479236 chr10:122768086-122768316+ NoOverlap chr10 122768086 122768316 + 5.29741692427 77 0.57337082693 -4.84529093798 10.1427078623 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122768085;231;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122768086-122768316%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122768086-122768316&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.711618928335 1.11588904006 0.978194486536 124527602 124527832 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124527601;231;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122768086-122768316%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124527602-124527832&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FHHQLPAAGACMEVRLLNGTGRCLGRVEVLIQGTWGTVCDHFWNLAEAAVVCRQLQCGQAMAAHFGASSGKVLLDDMQCVGSKSHLGRCVHR Same 481141 chr10:122768086-122768316+ 83 83 -43 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.649350649351 0.430247718383 17.548225974 0.8951 -5.8814987013 23.4297246753 0.947011338065 1.13657975138 1107 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 66.3747948052 0.941 -3.37945844156 69.7542532468 0.944341681622 0.984485923129 1857 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.056926662566 chr10:122630961-122631281+ 0.218946230461 chr10:122613974-122614297+ ENST00000439464.6 NCintron pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 41 586300 chr8:30859923-30860057- NoOverlap chr8 30859923 30860057 - 6.56373773219 45 0.901196137772 -5.11815561586 11.6818933481 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;30859922;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A30859923-30860057-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A30859923-30860057&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.978590093365 1.11583018802 0.922205488931 30717439 30717573 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;30717438;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A30859923-30860057-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A30717439-30717573&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLFGKVKKIQPSVDKNKVSLDPSPNFDCHMSRNAPSLKDTIELQAYSSAVC Same 587239 chr8:30859923-30860057- 30 30 11 0 38 30849192 30875103 Best 41 41;442;759;1484;2461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:30849192-30875103&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.362962962963 0.0 8.79851111111 1.0 -6.22164222222 15.0201533333 1.06508326396 0.971687275822 108 Best 108 108;522;666;1448;1996 16.0847822222 0.6475 -8.85176444444 24.9365466667 1.06721037149 1.03536663559 180 Best 180 180;472;1139;2145;2387 0.0 0.0 ENST00000523186.5 NC coding exon(s) TEX15 5' extended 42 563853 chr5:35788723-35788824+ NoOverlap chr5 35788723 35788824 + 10.0063912123 34 0.950102998398 -4.71164113721 14.7180323496 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;35788722;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35788723-35788824%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A35788723-35788824&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06270997269 1.11460795652 0.940201629491 35788825 35788926 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;35788824;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35788723-35788824%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A35788825-35788926&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVGFGSDGTHSIEGENNEVALLLREIQPCVQTVYCFAHHLELSYKAVFQNIPLYNDVK Same 564841 chr5:35788723-35788824+ 41 41 1 0 24 35787955 35790367 24 24;33;42;72;207;789;797;872;1069;2173;48626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:35787955-35790367&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.362745098039 0.316770186335 13.0356794118 1.0 -7.96807647059 21.0037558824 1.08425041792 0.936439055598 37 20 20;37;72;448;957;1150;1273;1329;1548;1888;12605 24.2033117647 0.6835 -17.4603029412 41.6636147059 1.04673263538 0.856771466203 376 77 77;86;112;376;544;1371;1761;1786;2084;2608;14924 0.0 0.0 ENST00000506526.5,ENST00000356031.7,ENST00000513078.1,ENST00000510433.1 NC,CDSintron,NCintron,AntiNCintron coding exon(s) SPEF2 5 consecutive coding exons including an alternative termination codon 43 476794 chr10:14842282-14842623+ NoOverlap chr10 14842282 14842623 + 15.5429560819 114 0.966988444637 4.99514995319 10.5478061287 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;14842281;342;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14842282-14842623%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A14842282-14842623&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0403109416 1.11384650952 1.05095520345 14884281 14884622 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;14884280;342;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14842282-14842623%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A14884281-14884622&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPSPPFQPTMASANSSAGIRWSRQETRTLLSILGEAEYIQRLQTVHHNADVYQAVSKRMQQEGFRRTERQCRSKFKVLKALYLKAYVAHATSMGEPPHCPFYDTLDQLLRNQIVTDPDNLMEDAAWAK Same 478688 chr10:14842282-14842623+ 25 25 18 0 39 14838293 14843891 Best 43 43;332;2288;5649;18768 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:14838293-14843891&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.505847953216 0.594385026738 19.8582201754 0.9932 8.58934298246 11.268877193 1.06078262492 1.04721730501 141 Best 141 141;644;2902;7592;7784 23.5992052632 0.4095 8.69571315789 14.9034921053 0.963033213204 0.940376286934 1661 Best 1661 1661;2005;4606;11944;25459 0.0 0.0 ENST00000493863.5,ENST00000378372.7 NC,CDSintron protein-coding gene protein-coding gene ENSG00000284024 44 735482 chrX:149549427-149549552- Extension chrX 149549427 149549552 - 6.38210721314 42 0.696496964545 -4.89326189813 11.2753691113 chrX:149549406-149549552- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;149549426;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149549427-149549552-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A149549427-149549552&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.805994083233 1.11300663815 0.943973418816 148630972 148631097 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;148630971;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149549427-149549552-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A148630972-148631097&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVSWNDDGDAVIIDKDLFQREVLQRKGAERIFKTDSLTSFIRQLNLYGFCK Same 736082 chrX:149549427-149549552- 35 35 9 0 40 149548419 149549612 Best 44 44;449;1374;8420 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:149548419-149549612&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.907407407407 12.2521166667 0.6592 -6.60483809524 18.8569547619 1.0683039915 0.916565649138 96 Best 96 96;3011;3881;6198 30.9680809524 0.5441 -10.3014047619 41.2694857143 0.992235464382 0.916694878824 1236 Best 1236 1236;2536;3537;4004 0.0972646527235 chrX:149594137-149594700- 0.499953336326 chrX:149594137-149594700- ENST00000431993.1,ENST00000422892.2 NC,AntiUTR3 protein-coding gene protein-coding gene ENSG00000283697 45 467015 chr1:146685740-146685886+ NoOverlap chr1 146685740 146685886 + 8.88887954062 49 0.51648052217 -1.02032456349 9.90920410412 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;146685739;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A146685740-146685886%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A146685740-146685886&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.889853311585 1.11184766928 0.983259120899 269270 269124 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;269269;-145;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A146685740-146685886%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A269270-269124&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLSYSCSPNAGLSHWQIVKEKLVCHAIIGAQKGKSLVMAVNITCEFVAPLIQLSTKQLIYRLEKVSEVCWR Same 468881 chr1:146685740-146685886+ 153 153 -108 0 41 146685740 146685886 Best 45 45 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:146685740-146685886&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.557823129252 0.438282647585 20.0281142857 0.9448 -3.0217122449 23.0498265306 1.0348997799 0.994295948959 422 Best 422 422 34.3974530612 0.6762 -5.73142653061 40.1288795918 0.980459667131 0.944185712344 1414 Best 1414 1414 0.966367570347 chr16:71025383-71025526- 0.959657621501 chr16:71025383-71025526- ENST00000614586.1 NCintron pseudogene extension HYDIN2 pseudogene extended (ENSG00000276975) 46 547450 chr21:31160436-31160531- NoOverlap chr21 31160436 31160531 - 8.37699388526 32 0.900128271153 -4.42018110315 12.7971749884 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;31160435;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A31160436-31160531-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A31160436-31160531&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01821801261 1.11058837161 0.942501221312 32532753 32532848 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;32532752;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A31160436-31160531-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A32532753-32532848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INYHENTFLMMSALWKIKRKPRIENNDKSGDSMYRTLHLVSAFAV Same 548855 chr21:31160436-31160531- 34 34 12 0 42 31160436 31160531 Best 46 46 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:31160436-31160531&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.46875 0.758893280632 12.6050875 0.912 -4.032040625 16.637128125 1.03383125031 0.976192209955 433 Best 433 433 21.860540625 0.5796 -3.526290625 25.38683125 1.09419575998 1.04967445383 66 Best 66 66 0.0 0.0 ENST00000286827.7 CDSintron coding exon(s) TIAM1 first coding exon. 47 483224 chr11:1078312-1078521+ NoOverlap chr11 1078312 1078521 + 9.08563849947 70 0.565048774374 0.246320018917 8.83931848056 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1078311;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1078312-1078521%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1078312-1078521&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04879752873 1.11033097027 1.00989524691 1078456 1078665 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1078455;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1078312-1078521%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1078456-1078665&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IACSPCVCPQRAECERLLTAEAFADCQDLVPLEPYLRACQQDRCRCPGGDTCVCSTVAEFSRQCSHAGGRPGNWRTATLCR Same 485154 chr11:1078312-1078521+ 98 98 -51 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.738095238095 0.909393737508 20.5800214286 0.8884 1.56358285714 19.0164385714 0.95461303304 0.976771705365 1067 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 47.0397942857 0.957 -1.66122428571 48.7010185714 0.985871680433 0.986830030961 1332 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.110147245222 chr11:1030573-1030780- 0.260669638109 chr11:1228564-1228765+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 48 567531 chr5:59430293-59430418- NoOverlap chr5 59430293 59430418 - 8.44699283654 42 0.930314590168 -3.98870718053 12.4357000171 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;59430292;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A59430293-59430418-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A59430293-59430418&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07001806105 1.10797823006 0.918830167397 58726119 58726244 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;58726118;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A59430293-59430418-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A58726119-58726244&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FAFTSCLLDIMSLPSSCEYLTLGKVARFRSAYVHGSPYAINMPIDIKPQRRR Same 568535 chr5:59430293-59430418- 43 43 5 0 43 59430293 59430418 Best 48 48 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:59430293-59430418&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.492063492063 0.666666666667 7.82091428571 0.9998 -4.21931666667 12.0402309524 1.01565842509 1.05744672058 612 Best 612 612 13.1417071429 0.6978 -6.42539047619 19.567097619 0.989927608034 1.05888851636 1281 Best 1281 1281 0.0 0.0 ENST00000340635.10,ENST00000505453.1,ENST00000309641.10 CDSintron,UTR5intron,NCintron coding exon(s) PDE4D first coding exon 49 483259 chr11:1104731-1104904+ NoOverlap chr11 1104731 1104904 + 8.04149485063 58 0.518605483251 -0.454551795433 8.49604664606 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1104730;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1104731-1104904%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1104731-1104904&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.891796799389 1.10759903347 1.02104347443 1098639 1098812 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1098638;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1104731-1104904%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1098639-1098812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLFAQCHALVPPQHYYDACVFDSCFMPGSSLECASLQAYAALCAQQNICLDWRNHTHGACCK Same 485189 chr11:1104731-1104904+ 163 163 -114 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.649425287356 0.662857142857 18.7989586207 0.9008 -3.2809862069 22.0799448276 1.00165644242 1.00723829147 723 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 37.4062224138 0.9274 -13.6503137931 51.0565362069 1.00912479805 1.00595389401 955 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.172520680285 chr11:1195876-1196054+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 50 462838 chr1:1034541-1034705+ NoOverlap chr1 1034541 1034705 + 9.72922540957 55 0.594627991982 1.15340729694 8.57581811263 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;1034540;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A1034541-1034705%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A1034541-1034705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0447886069 1.10726510186 1.02023461097 969921 970085 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;969920;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A1034541-1034705%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A969921-970085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EWGAEPEPRAMPPLPLARDTRQPPGASLLVRGFMVPCNACLILLATATLGFAVLLFLNNCR Same 464702 chr1:1034541-1034705+ 65 65 -15 0 44 1034466 1042172 Best 50 50;19942;30067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:1034466-1042172&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.721212121212 0.76124567474 14.1684090909 0.9005 -0.447309090909 14.6157181818 1.02503856747 0.974336438211 526 Best 526 526;33141;60896 22.7112563636 0.8049 -5.2129 27.9241563636 1.0049654441 1.00567962333 1035 Best 1035 1035;20095;26835 0.0 0.0666206397043 chr1:231338384-231338604+ ENST00000477585.1,ENST00000379370.6 NC,CDSintron coding exon(s) AGRN intronic alternative START 51 469753 chr1:1734683-1734835- NoOverlap chr1 1734683 1734835 - 9.9114765817 51 0.510502246218 1.28610392119 8.62537266051 ENST00000246421.4,ENST00000355439.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;1734682;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A1734683-1734835-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A1734683-1734835&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.968915719546 1.10707459795 1.0242596794 1666122 1666274 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;1666121;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A1734683-1734835-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A1666122-1666274&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DVPVIGRSGKSFSYNQDVVLLLLTDGVLFHLQSVTAYALMGKISPVTFR*AEELPK Same 471635 chr1:1734683-1734835- 138 138 -87 1 45 1734683 1734835 Best 51 51 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:1734683-1734835&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.59477124183 0.741279069767 22.1964764706 0.8379 4.51284117647 17.6836352941 1.0256968512 0.956028535445 517 Best 517 517 49.5563901961 0.8561 11.1300784314 38.4263117647 0.985919817595 0.975698320398 1331 Best 1331 1331 0.953682730736 chr1:1668327-1668472- 0.95951826032 chr1:1668327-1668472- ENST00000246421.4,ENST00000475229.2,ENST00000424604.1 CDS,NC,AntiNCintron pseudogene SLC35E2 (ENSG00000215790) has been converted from coding to pseudogenic; a coding exon is out of frame compared to its paralog SLC35E2B 52 488727 chr11:67667461-67667628- NoOverlap chr11 67667461 67667628 - 6.49235004682 56 0.608540420059 -2.95035187501 9.44270192183 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;67667460;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67667461-67667628-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A67667461-67667628&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.807645567432 1.1059157256 0.993191540276 67434932 67435099 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;67434931;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67667461-67667628-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A67434932-67435099&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MDPFEDTLRRLREAFN*GRTRPAEFRAAQLQGLGHFLQENKQLLRDVLAQDLHKVGRGEWAPAGAGAASLSSFR Same 490715 chr11:67667461-67667628- 121 121 -69 15 46 67666936 67667628 Best 52 52;1491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:67666936-67667628&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.678571428571 0.828351309707 11.7849392857 0.9 -6.51579107143 18.3007303571 1.04013262518 0.911209022586 364 Best 364 364;379 24.9660125 0.7266 -15.7587178571 40.7247303571 0.977573709867 0.866760792604 1458 477 477;1458 0.253918191904 chr11:68015298-68015459+ 0.486417610409 chr11:68015297-68015459+ ENST00000349015.7,ENST00000531881.5 UTR5,NC pseudo-exon ALDH3B2 has a premature termination codon compared to other family members, and this signal follows downstream 53 695470 chr3:36738660-36738968- Extension chr3 36738660 36738968 - 16.8835504865 103 0.808663420791 4.30622816093 12.5773223256 chr3:36738459-36738968- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;36738659;309;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A36738660-36738968-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A36738660-36738968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.09420074209 1.10561837943 1.0581923349 36780151 36780459 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;36780150;309;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A36738660-36738968-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A36780151-36780459&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNLEKPFLGPRGPVVPLFCPRNGLHSAHPENSPLKPRVVTVVKLGGQRPRKITLLLNRRSVQTFEQLLADISEALGSPRWKNDRVRKLFNLKGREIRSVSDFFREGDAFIAMGK Same 696100 chr3:36738660-36738968- 26 26 27 0 47 36738660 36739085 Best 53 53;277 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:36738660-36739085&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.572815533981 0.552490421456 29.299923301 0.9966 8.02740291262 21.2725203883 1.05577101655 1.03750315216 194 Best 194 194;382 56.5753300971 0.9283 11.7202174757 44.8551126214 1.00564539384 1.01312596819 1021 920 920;1021 0.0 0.0 ENST00000416516.2 Extension5p coding exon(s) DCLK3 5' extension 54 605073 chr1:2789592-2790239- Extension chr1 2789592 2790239 - 9.82717542512 216 0.644620841563 3.46546530406 6.36171012106 chr1:2789577-2790239- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;2789591;648;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A2789592-2790239-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A2789592-2790239&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06146046687 1.1051697545 1.02977938889 2706157 2706804 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;2706156;648;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A2789592-2790239-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A2706157-2706804&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESPSGARRQFQAVFSVQDQERVRAQAQEAADVGFARFQEAVRNHPELREDAGRELLAPVTRALRVLLRLAPAGARPALGARLAECLLLAGDAAGARAMCERLLRPARPEDPAGDRAGDRAPLLALRGFCALHAGDSRRAMEDFQTVVEQGAPHPGGCVRALCGRGLLRVLAGSAFLGTLDYVTACRLRPEEALLAAKAYVPWNQRGLLLVVLREEARGMLQR Same 605782 chr1:2789592-2790239- 122 122 -68 0 48 2789592 2800821 Best 54 54;238;634;805 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:2789592-2800821&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.762345679012 0.876701479978 16.6225773148 0.8316 4.81324537037 11.8093319444 1.05934311691 1.03663345964 159 149 149;159;806;852 32.3067412037 0.8701 3.80326018519 28.5034810185 1.01411686309 1.01121335452 868 240 240;868;964;1943 0.0 0.119938688594 chr20:49247267-49249711- ENST00000401095.6,ENST00000401094.9 Extension5p,NCintron coding exon(s) TTC34 5' extension 55 490923 chr12:25004369-25004488+ NoOverlap chr12 25004369 25004488 + 6.90396006452 40 0.765101472496 -3.88546479363 10.7894248581 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;25004368;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A25004369-25004488%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A25004369-25004488&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.926877677453 1.1045466662 0.968833767477 25157303 25157422 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;25157302;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A25004369-25004488%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A25157303-25157422&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTEKRHNPVESICRKIRAIHKREAISNPIQQIIKYQSSSFDSPQTNTK Same 492899 chr12:25004369-25004488+ 32 32 23 0 49 25004369 25004488 Best 55 55 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:25004369-25004488&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.408333333333 0.20202020202 9.725555 0.8682 -6.6809825 16.4065375 1.06541206639 0.94678780659 105 Best 105 105 38.54188 0.8866 -3.4791275 42.0210075 0.994603770912 0.953671748819 1201 Best 1201 1201 0.0 0.0 coding exon(s) LRMP 17 alternative coding exons at 5' end 56 565643 chr5:139472640-139472750+ NoOverlap chr5 139472640 139472750 + 7.95351622314 37 0.836740425479 -2.98762433674 10.9411405599 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;139472639;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A139472640-139472750%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A139472640-139472750&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0329735337 1.10383794854 0.976034991699 138852225 138852335 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;138852224;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A139472640-139472750%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A138852225-138852335&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VDGLPVVTVIVAVFVLLAVCIIVAVHFGPRLHQGHATLPTEPPTPKPDGGIYLIHWR Same 566638 chr5:139472640-139472750+ 31 31 25 0 50 139472562 139472807 Best 56 56;2777;5603 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:139472562-139472807&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.585585585586 0.315340909091 16.7438432432 1.0 -0.502827027027 17.2466702703 1.05122100878 0.969119643765 247 Best 247 247;1790;2114 27.9956189189 0.4707 -1.68584324324 29.6814621622 1.06208593386 1.02239885134 211 Best 211 211;3130;3241 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283288 57 591981 chr9:61066335-61066553- NoOverlap chr9 61066335 61066553 - 9.41202471681 73 0.44468050639 2.27867397462 7.13335074219 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61066334;219;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61066335-61066553-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61066335-61066553&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.996981971804 1.10357807707 1.04587560827 43891711 43891493 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;43891710;-217;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61066335-61066553-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A43891711-43891493&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQFSVNLLEQYSYLIFLAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFIGECWWFITEFSVSPER Same 592932 chr9:61066335-61066553- 194 194 -137 0 51 61063756 61073097 Best 57 57;497;1416;2274;21077 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61063756-61073097&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.520547945205 0.404930662558 9.73044383562 0.4313 2.78177671233 6.94866712329 0.835346109948 1.01530327499 1534 Best 1534 1534;1928;3000;3904;11180 40.6237 0.8222 6.43677808219 34.1869219178 0.975140553024 1.00494786024 1510 1059 1059;1309;1336;1510;1854 0.995449683829 chr9:41922677-41922895- 0.852259076467 chr9:41922677-41922895- pseudogene contactin associated protein-like 3B (CNTNAP3B) unprocessed pseudogene (ENSG00000283541) 58 483245 chr11:1089941-1090072+ NoOverlap chr11 1089941 1090072 + 7.87001594429 44 0.61890246017 -2.48432271995 10.3543386642 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1089940;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1089941-1090072%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1089941-1090072&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.887898485169 1.10332860925 0.975546328745 1087877 1088008 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1087876;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1089941-1090072%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1087877-1088008&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PWPCLPQAIFCDYYNPPHECEWHYEPCGNRSFETCRTINGIHSNISVSYLEGEQGGAGFSGGDGR Same 485175 chr11:1089941-1090072+ 99 99 -41 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.55303030303 0.503048780488 20.4636636364 0.8883 3.24101136364 17.2226522727 1.02945943795 0.968496658867 486 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 42.3549863636 0.9174 -2.16500454545 44.5199909091 0.986969441296 0.950307735345 1319 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0827725748391 chr11:1239438-1239566+ 0.351955250549 chr11:1180022-1180150+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 59 534331 chr2:89546933-89547118+ NoOverlap chr2 89546933 89547118 + 11.0467209388 62 0.530136322133 4.0557434923 6.99097744652 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89546932;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89546933-89547118%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89546933-89547118&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06801630026 1.10286946982 1.04131684451 91809277 91809462 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91809276;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89546933-89547118%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91809277-91809462&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLGLEWGLHGGLEAAPHHRPFSLLLQLWIPPAFGCRPEYDNGLEEIVFGFEPWIIVVNLAMPFSIFYGMHAAASLFEVYCKI*SGSTR Same 535708 chr2:89546933-89547118+ 79 79 -20 4 52 89533188 89547118 Best 59 59;529;844;1124;3586;7862 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89533188-89547118&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.467741935484 0.393234672304 10.7855516129 0.5497 3.86940645161 6.91614516129 0.897034997852 1.00692511902 1300 10 10;123;831;1300;2657;4594 34.0155532258 0.758 10.3559048387 23.6596483871 0.93850380019 1.0327499716 1894 312 312;340;1357;1759;1894;1991 0.920415856501 chr4:4188803-4188973- 0.942787149774 chr4:4188803-4188973- pseudogene Otopetrin 1 (OTPO1) unprocessed pseudogene (ENSG00000283427) 60 583080 chr7:151210190-151210318- NoOverlap chr7 151210190 151210318 - 5.14372792078 43 0.725509713432 -5.86500919134 11.0087371121 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;151210189;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A151210190-151210318-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A151210190-151210318&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.667835554396 1.10279917186 0.955178677673 150907276 150907404 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;150907275;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A151210190-151210318-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A150907276-150907404&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MSAEYGQRQQPGGRGGRSSGNKKSKKRCRRKESYSMYIYKVLK Same 584007 chr7:151210190-151210318- 38 38 22 0 53 151207868 151210318 Best 60 60;607 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:151207868-151210318&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.573643410853 0.781818181818 9.05813953488 0.7933 -7.17343953488 16.2315790698 1.07139030316 0.942602304127 73 Best 73 73;758 26.1444162791 0.7327 -16.591044186 42.7354604651 1.02619358575 0.855204087409 680 Best 680 680;1063 0.0 0.148285196479 chr21:43565239-43565619+ ENST00000222388.6 CDSintron protein-coding gene protein-coding gene ENSG00000285480 61 549332 chr22:50675045-50675254+ NoOverlap chr22 50675045 50675254 + 8.52890138498 70 0.500175478752 1.19341855177 7.33548283322 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50675044;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50675045-50675254%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50675045-50675254&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.982070147009 1.10245419853 1.04495859239 51113473 51113682 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51113472;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50675045-50675254%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51113473-51113682&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AHEPAPLQKCLRLDPAAPVWAAKQRVLCALNHSLQDALNYGLFQPPSRGRAGKFLDEERLLQEYPPNLDTPLPYLEVSGR None NA NA 0 54 50674240 50731692 Best 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.704761904762 0.7421875 11.7748671429 0.8703 1.33461142857 10.4402557143 1.01948554586 1.04800075172 578 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 38.7235457143 0.9445 0.963418571429 37.7601271429 0.994660798383 0.994007644728 1200 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.243722335027 chr19:50716275-50716478- ENST00000262795.5 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 62 535050 chr2:131035089-131035271+ NoOverlap chr2 131035089 131035271 + 8.81710155504 61 0.605158800141 0.164673760778 8.65242779426 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131035088;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131035089-131035271%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131035089-131035271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02689614983 1.10178484611 1.013852144 131792662 131792844 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;131792661;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131035089-131035271%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A131792662-131792844&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGRPGAMARAPQPRRGPAAPGNALRALLRCNLPPGAQRVVVSAVLALLVLINVVLIFLLAFR*AAAQGAAPG Same 536403 chr2:131035089-131035271+ 97 97 -35 3 55 131035089 131040270 Best 62 62;71075 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131035089-131040270&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.765027322404 0.987341772152 14.3444131148 0.7789 0.0987885245902 14.2456245902 1.07943208519 0.981247987264 53 Best 53 53;42452 25.8390983607 0.6855 -3.54775081967 29.3868491803 0.935672050711 1.0033323056 1908 Best 1908 1908;72391 0.0 0.0405078318454 chr1:154983695-154984066+ ENST00000439368.6,ENST00000326016.9 NC,CDSintron protein-coding gene protein-coding gene ENSG00000284479 63 467262 chr1:151766752-151766868+ NoOverlap chr1 151766752 151766868 + 8.87686401324 39 0.864045244956 -2.14377435125 11.0206383645 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;151766751;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A151766752-151766868%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A151766752-151766868&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07996278092 1.10106665061 0.97092438579 151739228 151739344 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;151739227;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A151766752-151766868%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A151739228-151739344&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CRPSVYSLSYIKRGKTRNYLYPIWSPYAYYLYCYKYRITLREKMLPR None NA NA 0 56 151766752 151766868 Best 63 63 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:151766752-151766868&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.452991452991 0.886363636364 9.59305384615 0.9984 -1.71489487179 11.3079487179 1.0341487018 1.06120677504 429 Best 429 429 11.3088307692 0.4111 -5.13501025641 16.4438410256 0.896620060261 1.03240615317 2120 Best 2120 2120 0.0 0.0 ENST00000400999.5,ENST00000577465.1,ENST00000321531.9,ENST00000596133.1,ENST00000512280.1 UTR5,NC,CDSintron,AntiNC,AntiNCintron coding exon(s) OAZ3 first coding exon. 64 552509 chr3:58180356-58180451+ NoOverlap chr3 58180356 58180451 + 6.1551125379 32 0.73623540856 -7.96530286223 14.1204154001 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;58180355;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A58180356-58180451%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A58180356-58180451&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.71067293258 1.09661896078 0.907617689931 58166083 58166178 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;58166082;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A58180356-58180451%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A58166083-58166178&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATQGPAGQTRPESLEMRQVSPRILQLLFPGISHDGQGHALDLQAR Same 553450 chr3:58180356-58180451+ 27 27 37 0 57 58180356 58180517 Best 64 64;4295 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:58180356-58180517&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.614583333333 0.342857142857 9.468659375 0.8967 -9.63291875 19.101578125 1.02369851433 0.921906642159 542 Best 542 542;2899 17.272140625 0.6664 -14.32765 31.599790625 1.06272732323 0.967699979496 207 Best 207 207;1714 0.0 0.0 pseudogene unitary pseudogene ENSG00000283511 65 494603 chr12:22126639-22126758- NoOverlap chr12 22126639 22126758 - 9.04945996217 40 0.905084687572 -1.59541500732 10.6448749695 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;22126638;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22126639-22126758-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A22126639-22126758&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08401278424 1.09657460024 0.98148293286 22279573 22279692 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;22279572;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22126639-22126758-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A22279573-22279692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QIFYIIRNPKDTALSLCHYYRDNPNLTCIKTWATILEPFLR Same 496600 chr12:22126639-22126758- 42 42 23 0 58 22116633 22134940 Best 65 65;1060;2224;6558;10486;27168 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:22116633-22134940&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.366666666667 0.0 7.8891075 0.9043 -4.8379825 12.72709 0.979262927333 1.04673250543 904 Best 904 904;2475;2558;2619;3486;6653 16.9503225 0.5803 -4.3739725 21.324295 1.08790262287 1.05447620921 88 Best 88 88;1118;2424;2918;3483;7533 0.0 0.0 ENST00000544732.5 NCintron pseudogene unitary pseudogene ENSG00000283582 66 569178 chr5:140594242-140594367- NoOverlap chr5 140594242 140594367 - 8.00600948398 42 0.843106736858 -1.61301911959 9.61902860357 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140594241;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140594242-140594367-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140594242-140594367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.056155796 1.09605808648 1.00844477205 139973827 139973952 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139973826;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140594242-140594367-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139973827-139973952&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APESVDCACVSLQEAEQELLARVQSTLGSLGRGYSVALLLRGRETEAPRLVPQVSPR Same 570191 chr5:140594242-140594367- 36 36 30 0 59 140590883 140594367 Best 66 66;3111;5039;6920;27936 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140590883-140594367&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.650793650794 0.306382978723 9.84175 0.9784 -5.51604047619 15.3577904762 1.06941177253 0.968471714444 89 Best 89 89;1580;2076;2463;3172 11.6579380952 0.3776 -6.02551428571 17.683452381 0.93517435992 1.04938625973 1915 Best 1915 1915;3790;4044;4161;4734 0.0 0.0 pseudogene unitary pseudogene ENSG00000283602 67 589434 chr9:87956321-87956437+ NoOverlap chr9 87956321 87956437 + 5.65855896167 39 0.692862103437 -5.92823332414 11.5867922858 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;87956320;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A87956321-87956437%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A87956321-87956437&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.670978463053 1.09581825265 0.94152210021 90571236 90571352 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;90571235;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A87956321-87956437%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A90571236-90571352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGDSLYLRRAFVNNLGEERRTRIQIQSIQKALDIQIREIDREKAALK Same 590381 chr9:87956321-87956437+ 49 49 18 0 60 87956321 87956437 Best 67 67 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:87956321-87956437&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.487179487179 0.295454545455 5.35750769231 0.4543 -6.58781538462 11.9453230769 0.476077925964 1.07859721026 3301 Best 3301 3301 6.53048717949 0.2256 -6.55761794872 13.0881051282 0.465579516292 0.979021790876 3665 Best 3665 3665 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283205 68 526658 chr19:1526483-1526611+ NoOverlap chr19 1526483 1526611 + 10.4702720306 43 0.588003924762 0.213890782622 10.256381248 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;1526482;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1526483-1526611%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A1526483-1526611&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01496352372 1.09561857547 0.993216816317 1526482 1526610 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;1526481;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1526483-1526611%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A1526482-1526610&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGAAGHPQSLAHVLRARQILTEPEVRDYLRGLVSGLRYLHQRCILHRDLK Same 528103 chr19:1526483-1526611+ 119 119 -51 0 61 1524154 1533821 Best 68 68;129;412;744;947;2039;3059;9713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:1524154-1533821&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.682170542636 0.79958677686 27.1991372093 0.9502 4.6916627907 22.5074744186 1.05428295972 0.96671588149 205 Best 205 205;265;523;631;1057;1237;1482;2663 66.7047790698 0.9501 2.76361860465 63.9411604651 0.99265006659 1.02432380347 1230 449 449;648;739;1129;1230;1261;1334;1921 0.0 0.298254422357 chr5:58458399-58458528- ENST00000334770.8 UTR5 pseudo-exon PLK5 pseudo exons 69 480116 chr10:19747190-19747432- NoOverlap chr10 19747190 19747432 - 8.1347691505 81 0.43550246923 -3.22067158936 11.3554407399 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;19747189;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A19747190-19747432-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A19747190-19747432&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.92337370698 1.09417447342 0.960165357936 20036119 20036361 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;20036118;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A19747190-19747432-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A20036119-20036361&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISTPLLNNMPIINLLLIPTLTVIAFLALIKRKSLGYIQPHKGPNIVGPYGLLQPFIDAIKLFTKEPLPPSTSTITLYIIAPNLTLSIALLLQSPLPTEVELCSEVTPTTFFNAGIVG Same 482024 chr10:19747190-19747432- 297 297 -228 0 62 19747190 19747432 Best 69 69 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:19747190-19747432&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.407407407407 0.556064073227 -1.59908395062 0.1146 -4.41914197531 2.82005802469 -0.0161308892341 0.630457374853 51412 Best 51412 51412 24.4514345679 0.5961 -4.10797407407 28.559408642 0.895359490549 1.03614988528 2127 Best 2127 2127 0.0 0.782470164736 chrM:3307-4262+ ENST00000480707.1 AntiNCintron pseudogene MTND1P37 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 37 (ENSG00000283456) 70 505839 chr14:105854939-105855043- NoOverlap chr14 105854939 105855043 - 6.24569438866 35 0.786065461204 -5.21335990173 11.4590542904 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105854938;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105854939-105855043-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105854939-105855043&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.824950334867 1.09292176432 0.959732913854 106321044 106321148 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106321043;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105854939-105855043-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106321044-106321148&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") THTNISESHPNATFSAVGEASICEDDWNSGERFTCTVTHTDLPSPLK None NA NA 0 63 105837465 105856215 Best 70 70;297;303;618;1534;1768;2725;3071;4703;4966;9883;19584;21248 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105837465-105856215&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.619047619048 0.696022727273 17.0229971429 0.7879 6.17890857143 10.8440885714 1.01604967996 1.05332933802 606 171 171;488;606;760;1848;2075;2155;2623;3063;3220;4742;9758;24097 27.6495314286 0.5099 7.89234857143 19.7571828571 1.11323803404 1.03011711076 30 Best 30 30;154;1395;1760;1980;1989;2291;2612;2659;3437;3454;6249;20954 0.0 0.0 ENST00000390559.6,ENST00000612473.1 NC,NCintron coding exon(s) IGHM alternative final coding exons 71 534717 chr2:110269357-110269482+ NoOverlap chr2 110269357 110269482 + 9.76920946723 42 0.59710078584 -0.490226193908 10.2594356611 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110269356;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110269357-110269482%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110269357-110269482&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.98448629912 1.09278527861 0.99227822119 111026934 111027059 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111026933;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110269357-110269482%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111026934-111027059&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NVLFHITLYLSWVGEHPSTVLGQCNTDISGLCLSQLTLIDLIICGSLEAINIHSIRWSRALRPVFLINFPESRQVSI Same 536069 chr2:110269357-110269482+ 135 135 -64 0 64 110261435 110272049 Best 71 71;655;738;1590;1755;2806;2841;5622 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110261435-110272049&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.484126984127 0.407327586207 17.0079547619 0.7713 0.599978571429 16.4079761905 1.08312360349 0.971312478501 39 Best 39 39;230;616;725;1137;1749;1796;2218 44.0554833333 0.8142 3.66684047619 40.3886428571 0.99471279664 0.971206122138 1197 260 260;295;766;1197;1279;1318;1559;1820 0.0 0.0 ENST00000562613.2 NCintron pseudogene ion transport protein domain-containing transcribed unprocessed pseudogene (ENSG00000261760) 72 563861 chr5:35790206-35790301+ NoOverlap chr5 35790206 35790301 + 7.92581871245 32 0.906004425116 -3.59895629465 11.5247750071 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;35790205;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35790206-35790301%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A35790206-35790301&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.994294927324 1.0907893732 0.975041494879 35790308 35790403 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;35790307;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35790206-35790301%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A35790308-35790403&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AESMTDVLIIQLNSPDINNFDPRKAIHLWNARTPSSTGDTR Same 564849 chr5:35790206-35790301+ 60 60 12 0 24 35787955 35790367 24 24;33;42;72;207;789;797;872;1069;2173;48626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:35787955-35790367&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.34375 0.352941176471 12.535315625 0.999 -5.018 17.553315625 1.07153115134 0.95839930988 72 20 20;37;72;448;957;1150;1273;1329;1548;1888;12605 19.641725 0.5844 -6.321228125 25.962953125 1.08847001071 1.04533963399 86 77 77;86;112;376;544;1371;1761;1786;2084;2608;14924 0.0 0.0 ENST00000506526.5,ENST00000356031.7,ENST00000510433.1 NC,CDSintron,AntiNCintron coding exon(s) SPEF2 5 consecutive coding exons including an alternative termination codon 73 578141 chr7:57190494-57191138+ NoOverlap chr7 57190494 57191138 + 7.99176606737 215 0.39850156405 -2.57318231968 10.564948387 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57190493;645;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57190494-57191138%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57190494-57191138&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02398068044 1.09070257815 1.00235354383 57258201 57258845 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57258200;645;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57190494-57191138%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57258201-57258845&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MNENLLTSFTAPTILGLPTAALIIFFPTTLLPTSNYLINNQLISIQQSLVQLVLKQIIITHTIKG*T*SLILISLILFTALANLLEFLPHSFIPTTRLSINLSIAIPL*AGTVITGF*FKTKNSLAHFLPPGTHIPLTPILVIIQTISPLIQLMALAVHLTANITAGHLLIHLTGGTTLVLSTINLPTASITLIILIL*TTLKFAVALIQTCVFMLLVSLYLYDNT Same 579180 chr7:57190494-57191138+ 223 223 -150 134 65 57190149 57192692 Best 73 73;718;767;5573;6277;8782;10566 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57190149-57192692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.381395348837 0.303101503759 33.1202288372 0.8026 -0.644322325581 33.7645511628 0.766341967562 0.868995770085 1806 832 832;1401;1806;1937;2083;2177;2604 70.568707907 0.9227 0.9279 69.640807907 0.920076176806 0.958026536603 2011 1370 1370;1632;1670;1726;2011;2050;2238 0.842636290326 chrM:8527-9207+ 0.948800998403 chrM:8527-9207+ pseudogene MTCO3P4 mitochondrially encoded cytochrome c oxidase III pseudogene 4 (ENSG00000228851) 74 579865 chr7:150330048-150330257+ NoOverlap chr7 150330048 150330257 + 3.77237140579 70 0.62244602121 -6.70668429307 10.4790556989 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;150330047;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A150330048-150330257%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A150330048-150330257&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.451158767322 1.08920816376 0.972362997907 150027137 150027346 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;150027136;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A150330048-150330257%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A150027137-150027346&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEGCSPIPCFAHCLDSLVRNFLCHPHSVQIILGTARATCSHF*GSVEAQGLLTQLQRQRSLLAHQPFEELLDHWVSAYHLLEWLVEQQQPLQEYK Same 580835 chr7:150330048-150330257+ 168 168 -94 34 66 150329868 150331248 Best 74 74;1780;4082;12493 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:150329868-150331248&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62380952381 0.257352941176 6.78393428571 0.6842 -6.83296714286 13.6169014286 0.99877158397 1.00673022995 750 Best 750 750;2072;2985;5137 10.2254371429 0.2592 -6.94833 17.1737671429 0.74858236522 1.05338581026 2637 Best 2637 2637;3557;3566;5518 0.0 0.193955001409 chr1:203797523-203800462+ ENST00000343855.5,ENST00000323078.7 UTR5,UTR5intron pseudo-exon ZBED6CL pseudogenic sequence upstream of ATG 75 546144 chr20:63572713-63573033- NoOverlap chr20 63572713 63573033 - 7.29873180807 107 0.592663833052 -1.50682522955 8.80555703763 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;63572712;321;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A63572713-63573033-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A63572713-63573033&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.968561411754 1.08780644291 1.03577079533 62204066 62204386 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;62204065;321;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A63572713-63573033-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A62204066-62204386&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LCALVDLCLGCSRCTQRLNESTYVLRRVEHDCSREILLARFKQATKSKVWRVVGCRPTFPRPLCYQVCHYYSPGLGCRRHRNRCTFARSREEALVWTFERQHNLQRLWLKAEVQGSGAQGGAGR Same 547557 chr20:63572713-63573033- 114 114 -39 0 67 63572386 63573033 Best 75 75;793;4382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:63572386-63573033&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.620289855072 16.3534186916 0.807 -4.44279158879 20.7962102804 0.901558662069 1.00707935127 1289 412 412;1289;1593 29.4266747664 0.7226 -13.2722140187 42.698888785 1.00003290315 1.00905342657 1111 655 655;1111;1190 0.0 0.0472931910081 chr9:136840322-136840522+ ENST00000370082.1 NC pseudo-exon HELZ2 pseudo-exon 76 483256 chr11:1103271-1103456+ NoOverlap chr11 1103271 1103456 + 5.64273225937 62 0.54919016433 -3.55873549802 9.20146775738 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1103270;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1103271-1103456%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1103271-1103456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.657807332789 1.08766627374 1.0051384919 1097179 1097364 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1097178;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1103271-1103456%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1097179-1097364&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TEAAAAPMVCRPQVQVNRQAVALPYKKYGLEVYQSGINYVVDIPELGVLVSYNGLSFSVRLPYHRFGNNTKGQCGEFR Same 485186 chr11:1103271-1103456+ 267 267 -191 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.602150537634 0.415178571429 13.4567467742 0.8975 -5.24037580645 18.6971225806 0.992741709502 0.935131286076 805 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 25.9275629032 0.8778 -15.411333871 41.3388967742 1.01470191032 0.893512559138 858 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0902537146369 chr11:1194487-1194670+ 0.164505110794 chr11:1254694-1254880+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 77 527137 chr19:10052839-10052967+ NoOverlap chr19 10052839 10052967 + 7.99549532422 43 0.5617584071 -2.59458837987 10.5900837041 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;10052838;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A10052839-10052967%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A10052839-10052967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.812328067785 1.08756419806 0.969677628388 10163515 10163643 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;10163514;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A10052839-10052967%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A10163515-10163643&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPTGCPEQTLSSLTPVIILSRYLDTTGQWGKVGVEHRDQVMKNIVSGESGDPPGASK Same 528583 chr19:10052839-10052967+ 241 241 -164 0 68 10044071 10052967 Best 77 77;2165;5660;9001 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:10044071-10052967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62015503876 0.564727954972 12.7624116279 0.8111 -5.83343255814 18.595844186 1.10136233658 0.919774263701 16 Best 16 16;1747;2188;3282 38.5345372093 0.8119 -2.02368372093 40.5582209302 0.995890118468 0.957823226614 1174 327 327;682;1174;2985 0.0 0.411071635625 chr19:6694431-6694634- ENST00000495140.1 NCintron pseudogene C3P1 transcribed unprocessed pseudogene (ENSG00000167798) 78 500688 chr14:21990763-21990810+ NoOverlap chr14 21990763 21990810 + 6.67232499272 16 0.87996490425 -15.4704875797 22.1428125724 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21990762;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21990763-21990810%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21990763-21990810&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.392032624992 1.08744211744 1.11475188749 22459002 22459049 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22459001;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21990763-21990810%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22459002-22459049&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CNYSYSGSPELFWYVQYSRQRLQLLLR None NA NA 0 69 21990718 21990933 Best 78 78;1846;7023 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21990718-21990933&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.375 3.196325 0.7708 -19.3875125 22.5838375 0.46900907602 0.932395825816 3353 3170 3170;3353;14300 13.83805625 0.4913 -23.58840625 37.4264625 0.71607031702 0.926804340906 2756 2746 2746;2756;3384 0.0 0.0 ENST00000390444.1 NC immunoglobulin segment overlaps an immunoglobulin region 79 552034 chr3:46625129-46625248+ NoOverlap chr3 46625129 46625248 + 7.70432496667 40 0.780168612192 -1.95094504952 9.65527001619 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;46625128;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A46625129-46625248%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A46625129-46625248&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00394442988 1.08717773564 1.01212149894 46666619 46666738 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;46666618;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A46625129-46625248%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A46666619-46666738&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LREEWKQRLETKLRLRNNPEDTEKRTNVG*ELPASLTQEDAK Same 552972 chr3:46625129-46625248+ 48 48 31 10 70 46617165 46625248 Best 79 79;180 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:46617165-46625248&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.475 0.155844155844 10.920435 0.927 -1.721615 12.64205 1.04356392793 1.03865727226 326 Best 326 326;896 8.4237675 0.3854 -7.1097075 15.533475 0.782281003064 1.02878314635 2539 5 5;2539 0.0 0.0 ENST00000444264.1 NC protein-coding gene protein-coding gene ENSG00000283473 80 553602 chr3:141666819-141666935+ NoOverlap chr3 141666819 141666935 + 8.49963085774 39 0.798312899938 -0.986971800144 9.48660265788 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;141666818;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141666819-141666935%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A141666819-141666935&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04994962906 1.08665614746 1.02165822459 141385661 141385777 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;141385660;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141666819-141666935%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A141385661-141385777&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILPVSLEPLLMTIQDEHYTLAKEICIWGLQLSNPEIARLVSYGFK Same 554551 chr3:141666819-141666935+ 46 46 34 0 71 141663155 141666935 Best 80 80;107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:141663155-141666935&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.487179487179 0.145161290323 10.0623384615 0.8794 -3.35456666667 13.4169051282 1.02680212061 1.02601688194 505 158 158;505 12.3679 0.3668 -4.0980974359 16.4659974359 0.892089109074 1.0289831626 2147 42 42;2147 0.0 0.0 ENST00000474979.3 NC redundant PhyloCSF signals are accounted for elsewhere on the list 81 582910 chr7:143642640-143642978- NoOverlap chr7 143642640 143642978 - 7.77327516721 113 0.515635838716 0.602467213584 7.17080795363 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143642639;339;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143642640-143642978-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143642640-143642978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.949988048405 1.08650301026 1.05005087095 143339733 143340071 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143339732;339;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143642640-143642978-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143339733-143340071&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EIVWADPPQCSSLPSVFPGWMHSGYPIMCHLESVKEIINEMDMRSRGVWGPIHELGHNQQWHGWEFPPHTTEATCNLWSVYVHETVLGIPRAQAHEALSPPERERRIKAHLGKGAPLCDWNVWTALETYLQVLSR Same 583839 chr7:143642640-143642978- 78 78 3 0 72 143639739 143647639 Best 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.572271386431 0.0723354315587 18.9841707965 0.9619 0.845202654867 18.1389681416 1.07891780737 1.0138156411 55 Best 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 39.7033964602 0.9044 -4.32312477876 44.0265212389 1.0204850507 1.03050743227 779 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.966060952501 chr7:143724360-143724730+ 0.810000091223 chr7:143724360-143724730+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 82 548095 chr22:21658266-21658385+ NoOverlap chr22 21658266 21658385 + 9.21529501481 40 0.754523155566 -3.5317375727 12.7470325875 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21658265;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21658266-21658385%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21658266-21658385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05466881938 1.08550418652 0.924760827792 22012555 22012674 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;22012554;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21658266-21658385%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A22012555-22012674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGVSRPGPPPALPLLLLLQAKFFCVVQAELNHCNSMGALEMHEQVEQLKQSIHRVHLYSR Same 549515 chr22:21658266-21658385+ 53 53 29 0 73 21657814 21660946 Best 82 82;492;4782 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21657814-21660946&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.557275541796 12.9525425 0.9896 -9.401925 22.3544675 1.08859396197 0.963042924461 29 Best 29 29;584;2975 12.959945 0.3678 -11.950885 24.91083 1.05376764036 1.04583830826 278 Best 278 278;2568;5288 0.0 0.0 ENST00000498589.1 NC pseudogene unitary pseudogene (ENSG00000284630) 83 468430 chr1:200921730-200921864+ NoOverlap chr1 200921730 200921864 + 8.07093538311 45 0.807639005451 -7.13190672215 15.2028421053 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;200921729;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A200921730-200921864%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A200921730-200921864&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04828600797 1.08504070011 0.944887139893 200890858 200890992 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;200890857;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A200921730-200921864%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A200890858-200890992&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSFPASPCSQVNPPFHLSQKLDLVNVGVSSLFSLPPIVPSLYRRDNASLYLQVIPTSSWR Same 470299 chr1:200921730-200921864+ 33 33 50 0 74 200920454 200929951 Best 83 83;3374;7261 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:200920454-200929951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.540740740741 0.518433179724 13.3403088889 0.9658 -7.93379111111 21.2741 1.07040431453 0.945694359387 81 Best 81 81;1766;1958 13.3443022222 0.3698 -9.81871777778 23.16302 1.06894826233 1.05419984216 174 Best 174 174;3848;3945 0.0 0.0 ENST00000435735.1 NCintron pseudogene unitary pseudogene ENSG00000233217 84 483252 chr11:1101231-1101371+ NoOverlap chr11 1101231 1101371 + 7.89994686425 47 0.529059508562 -1.75546379277 9.65541065702 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1101230;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1101231-1101371%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1101231-1101371&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.795139167067 1.08496144366 0.995140652911 1095139 1095279 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1095138;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1101231-1101371%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1095139-1095279&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LALPLDGVIVGLSPFAGEEVYNGTYGDTCYFVNCSLSCTLEFYNWSCPSTPSPTPTPSKSTPTPSKPSSTPSKPTPGTKPPECPDFDPPR Same 485182 chr11:1101231-1101371+ 292 292 -208 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.567375886525 0.88679245283 18.5356170213 0.8137 -0.168204255319 18.7038212766 1.05962969908 0.94325765554 153 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 17.9719234043 0.5705 -6.07861276596 24.0505361702 1.09454156726 1.04003816023 64 Best 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.125599218445 chr19:39927059-39928306- ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 85 585595 chr8:143790141-143790269+ NoOverlap chr8 143790141 143790269 + 9.58004880575 43 0.635475451605 0.699039537546 8.88100926821 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143790140;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143790141-143790269%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143790141-143790269&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01446820389 1.08483359908 1.03183689242 144872311 144872439 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144872310;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143790141-143790269%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144872311-144872439&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WPLVIDPLGQAATFLRYQDTNYVDTVNPEPLRPETMWLALLGALR Same 586532 chr8:143790141-143790269+ 130 130 -45 0 75 143788915 143790593 Best 85 85;88;331;613;845;2035;14755 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143788915-143790593&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.627906976744 0.471951219512 16.2038116279 0.8452 0.708769767442 15.4950418605 1.06882167543 0.982530150183 92 Best 92 92;111;801;1056;1111;2067;2390 23.0459023256 0.5663 -4.81229767442 27.8582 1.0792921675 1.01544833507 127 116 116;127;431;967;1717;2161;3235 0.0 0.0604956919556 chr3:9751770-9751949+ ENST00000527139.5 NC protein-coding gene protein-coding gene ENSG00000203499 86 521796 chr17:45517900-45518139- NoOverlap chr17 45517900 45518139 - 7.08223872073 80 0.606323910887 -1.52519493643 8.60743365716 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;45517899;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45517900-45518139-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A45517900-45518139&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.962644680491 1.08461728679 1.02561206671 43595266 43595505 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;43595265;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45517900-45518139-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A43595266-43595505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQLPIAQFEIQLTQQLQSLIPNNNVRRLISHVIRTLKMDCSGAHVQVTCAKLISRTGHLMKLLSGQQEVKASEIEWDTDQWKTENYINESTEAQSEQK Same 523221 chr17:45517900-45518139- 182 182 -96 0 76 45517900 45519352 Best 86 86;4762;12425;22792 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:45517900-45519352&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.504166666667 0.131147540984 7.825205 0.7014 -1.55650875 9.38171375 0.961370530534 1.06753302404 1028 Best 1028 1028;2157;2339;6777 13.00081625 0.442 -4.7602225 17.76103875 0.920964655468 1.05154640202 2008 Best 2008 2008;3658;3994;7340 0.826961228972 chr17:46548312-46549843+ 0.911843980829 chr17:46548312-46549843+ ENST00000581296.1 NCintron pseudogene LRRC37A4P transcribed unprocessed pseudogene (ENSG00000282331) 87 585587 chr8:143771795-143771968+ NoOverlap chr8 143771795 143771968 + 10.1414707396 58 0.527128962413 3.54736213437 6.59410860518 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143771794;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143771795-143771968%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143771795-143771968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03577313239 1.08453032804 1.04461169282 144853965 144854138 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144853964;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143771795-143771968%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144853965-144854138&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGAEWAVTSAGASQAYLAPVRREQEAARRLREQEEAAQRERREELQRRRRLLDAAFDGDVGEIRAVLKEVSGGGR Same 586524 chr8:143771795-143771968+ 186 186 -99 0 77 143771490 143772485 Best 87 87;100;935;6043 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143771490-143772485&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.775862068966 1.03429355281 13.2150913793 0.6658 0.130555172414 13.0845362069 1.1378265924 1.00400536154 3 Best 3 3;85;342;2588 15.3583672414 0.667 -7.7776637931 23.1360310345 1.02450084816 1.04624378753 705 320 320;384;705;2873 0.0 0.124664025039 chrX:119758668-119759615+ ENST00000529743.1 AntiNC redundant PhyloCSF signals are accounted for elsewhere on the list 88 585590 chr8:143788915-143789058+ NoOverlap chr8 143788915 143789058 + 10.2044479273 48 0.677759975586 1.6347437355 8.56970419176 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143788914;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143788915-143789058%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143788915-143789058&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06109226275 1.08445751263 1.03110146256 144871085 144871228 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144871084;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143788915-143789058%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144871085-144871228&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VASLDTVVSVLRSWDLSLTEAMLQNMEAEQQRRAQEAQRHKEAEAERCGR Same 586527 chr8:143788915-143789058+ 82 82 6 0 75 143788915 143790593 85 85;88;331;613;845;2035;14755 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143788915-143790593&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.680555555556 0.492939666239 13.67525 0.8779 -2.03104166667 15.7062916667 1.06458791774 0.957564734922 111 92 92;111;801;1056;1111;2067;2390 15.4052854167 0.553 -5.81992083333 21.22520625 1.08256947232 1.05427865372 116 Best 116 116;127;431;967;1717;2161;3235 0.0 0.0919235911096 chr19:18280456-18280929- ENST00000534089.5 NC protein-coding gene protein-coding gene ENSG00000203499 89 520068 chr17:5500603-5500728- NoOverlap chr17 5500603 5500728 - 9.59342857344 42 0.856846396146 1.81306670393 7.78036186951 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;5500602;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A5500603-5500728-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A5500603-5500728&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0838275309 1.08370343073 1.05202172933 5403923 5404048 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;5403922;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A5500603-5500728-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A5403923-5404048&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KEAPPLDEGCYLDHFPHLSIFIYAAIAFSITSCIFTYIHLQLA Same 521475 chr17:5500603-5500728- 44 44 45 0 78 5500603 5500902 Best 89 89;4674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:5500603-5500902&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52380952381 0.846584546473 10.9753619048 0.861 1.48736428571 9.48799761905 0.988924159086 1.053043525 840 Best 840 840;2806 10.7511047619 0.3247 0.969576190476 9.78152857143 0.608508603933 0.876284299618 3140 Best 3140 3140;5413 0.0 0.0561388653328 chr7:100888843-100889271- ENST00000568641.1,ENST00000544378.6 NC,NCintron under investigation; now made coding A 119aa single exon CDS in the 3' UTR of NLRP1 [chr17:5500956-5500597] was initially thought to be an alternative coding exon. However, after revaluation it became clearer that the evidence linking the two loci together is weaker than that which separates them. Specifically, the 119aa CDS can be defined on a single-exon gene model that shows a brain-specific expression profile that differs from the general expression profile of NLRP1. Following the completion of the analytical work presented here, it was decided to annotate a protein-coding gene, and ENSG00000286190 appeared in GENCODEv31. 90 479238 chr10:122772109-122772243+ NoOverlap chr10 122772109 122772243 + 17.6007356518 45 0.853513389792 1.90180444982 15.698931202 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122772108;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122772109-122772243%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122772109-122772243&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03137635137 1.08331434082 0.993383299161 124531625 124531759 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124531624;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122772109-122772243%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124531625-124531759&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CGGIITNSSGAIRNPPQNEMHDNITCVWEIKANASDHILLAFPHLE Same 481143 chr10:122772109-122772243+ 54 54 36 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.42962962963 0.160714285714 25.4255422222 0.9265 4.03376222222 21.39178 1.04471132819 0.956017451273 312 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 27.2225066667 0.4057 -0.789155555556 28.0116622222 1.09399077763 1.02254167311 68 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.0 0.179406110324 chr10:122633191-122633341+ ENST00000439464.6 NC pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 91 577932 chr7:37796163-37796255+ NoOverlap chr7 37796163 37796255 + 10.4191644394 31 0.921325467554 -4.11279345039 14.5319578898 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;37796162;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796163-37796255%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A37796163-37796255&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04870549917 1.08289221877 0.947377931933 37835765 37835857 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;37835764;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796163-37796255%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A37835765-37835857&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TNSQSMIGTIIFNIIVLHSILLVSLPFHLSYYVLVIWELGFLYLPSG Same 578971 chr7:37796163-37796255+ 84 84 7 0 34 37796070 37796888 35 35;91;149;575;1403;9158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:37796070-37796888&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.462365591398 0.476923076923 15.6194 0.9709 -4.20197741935 19.8213774194 1.06077969123 0.951072522783 142 34 34;142;466;1005;2248;12157 32.9791806452 0.6689 -6.83307741935 39.8122580645 1.04240663403 0.96173988234 436 146 146;436;833;961;1880;4101 0.0 0.354452402301 chr7:37740394-37741311+ ENST00000476620.1,ENST00000461610.5 UTR5intron,NCintron pseudogene unitary pseudogene ENSG00000283444 92 558743 chr4:36281873-36281965+ NoOverlap chr4 36281873 36281965 + 8.42531933708 31 0.928506067922 -3.32415488362 11.7494742207 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;36281872;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A36281873-36281965%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A36281873-36281965&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00165121791 1.0827414682 0.975078515478 36283495 36283587 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;36283494;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A36281873-36281965%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A36283495-36283587&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QALLGDDLCEGAGGATWMATVVFLGQELSSALHQLLEHTSGTLR Same 559726 chr4:36281873-36281965+ 111 111 -19 0 79 36281786 36281965 Best 92 92;663 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:36281786-36281965&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.623655913978 0.0 10.0743580645 0.9584 -2.99185806452 13.066216129 0.986354565732 1.0487825697 861 Best 861 861;1762 6.54421612903 0.5238 -12.3221 18.866316129 0.796197179485 1.07233850288 2493 Best 2493 2493;3185 0.0 0.0 ENST00000357504.7 UTR5 coding exon(s) DTHD1 5' coding exon 93 574268 chr6:30057241-30057297- NoOverlap chr6 30057241 30057297 - 8.02828932593 19 0.94998815418 -9.19201567298 17.2203049989 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;30057240;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30057241-30057297-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A30057241-30057297&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.643546454422 1.08268915242 0.969333694194 30025018 30025074 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;30025017;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30057241-30057297-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A30025018-30025074&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVNEREQMQTKDHQERMIRGRELAEQR Same 575297 chr6:30057241-30057297- 206 206 -113 0 80 30056989 30058171 Best 93 93;601;1036;2276;5125 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:30056989-30058171&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.491228070175 0.633333333333 10.6091315789 0.9564 -3.05244210526 13.6615736842 0.784921970159 1.05023618233 1727 903 903;1446;1727;2503;6815 11.0519368421 0.3421 -5.30227368421 16.3542105263 0.495582826902 0.974158814327 3544 2810 2810;3423;3544;3993;9246 0.0 0.0 ENST00000421692.5,ENST00000376797.7 NC,NCintron pseudogene unitary pseudogene ENSG00000204623 94 507663 chr15:86907112-86907228+ NoOverlap chr15 86907112 86907228 + 10.4344283279 39 0.884092469673 1.86948982875 8.56493849919 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;86907111;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A86907112-86907228%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A86907112-86907228&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08419092947 1.08251926522 1.04806367628 87450343 87450459 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;87450342;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A86907112-86907228%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A87450343-87450459&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSSSSGSVPSELEDEPACLEEIDYSTDNSSDQEGSLSELDRRIQECAFNK Same 509394 chr15:86907112-86907228+ 50 50 44 0 81 86907112 86907228 Best 94 94 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:86907112-86907228&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.564102564103 0.333333333333 17.7805230769 0.9292 1.53266666667 16.2478564103 1.04063382819 0.985428627505 357 Best 357 357 21.0913897436 0.5012 -1.53132307692 22.6227128205 1.12754118325 1.05030371749 9 Best 9 9 0.0 0.0 ENST00000441037.6 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 95 590782 chr9:131556070-131556219+ NoOverlap chr9 131556070 131556219 + 9.89854595661 50 0.682675211719 1.1941579932 8.70438796341 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;131556069;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A131556070-131556219%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A131556070-131556219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05676775074 1.08231891241 1.02366311692 134431457 134431606 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;134431456;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A131556070-131556219%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A134431457-134431606&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWASSLTTVALPPQYNGPMAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEVGAGAALGTASPSTQPLAPQWVHR Same 591735 chr9:131556070-131556219+ 94 94 1 0 82 131546695 131558199 Best 95 95;333;354;38371;66990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:131546695-131558199&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.613333333333 0.498338870432 22.834262 0.9426 3.61687 19.217392 1.00192507167 0.947834071057 718 193 193;548;718;6528;43932 36.178862 0.738 1.849336 34.329526 0.940882354106 0.988284084475 1875 819 819;1673;1875;4514;55696 0.0 0.0723937705293 chr6:32149537-32149722- protein-coding gene protein-coding gene ENSG00000283526 96 565157 chr5:122373885-122373965+ NoOverlap chr5 122373885 122373965 + 9.67064086596 27 0.970526916632 -4.94674449938 14.6173853653 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;122373884;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122373885-122373965%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A122373885-122373965&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.95795492897 1.08228187768 0.949529852118 121709580 121709660 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;121709579;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122373885-122373965%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A121709580-121709660&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSLKVVSVLWVAGVVVYIPV*IRTRKPEFSNAGNDTDPLSTNR Same 566148 chr5:122373885-122373965+ 155 155 -59 7 83 122373512 122374412 Best 96 96;483;792;813;893;6475 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:122373512-122374412&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.432098765432 0.283216783217 9.23371111111 0.9995 -11.3222555556 20.5559666667 1.00506176361 0.925620728141 689 592 592;628;689;1305;1845;2458 5.14107037037 0.6642 -21.4649481481 26.6060185185 0.839490355289 1.07259467959 2350 1664 1664;1963;2350;2533;2860;3772 0.0 0.0 ENST00000261367.11,ENST00000508017.5,ENST00000507143.1 UTR5intron,NCintron,AntiNCintron pseudo-exon SNCAIP untranscribed pseudo-exon. Subsequent reanalysis following the completion of this study suggests it may in fact be an ancient vomeronasal receptor unitary pseuodgene. 97 574005 chr6:17821790-17821903- NoOverlap chr6 17821790 17821903 - 9.78946313105 38 0.782192721447 -1.28217629069 11.0716394217 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;17821789;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A17821790-17821903-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A17821790-17821903&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0697440804 1.08155716284 0.978783891912 17822021 17822134 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;17822020;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A17821790-17821903-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A17822021-17822134&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLDGVHCDSPLLLGGFPIISLSAWWSSPWWSYLKILFPLMWFQTKLLHKHWDK Same 575034 chr6:17821790-17821903- 67 67 30 0 84 17821790 17821903 Best 97 97 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:17821790-17821903&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.285 12.4411 0.9931 -3.98094210526 16.4220421053 1.07455198568 0.96072000502 63 Best 63 63 13.7046526316 0.4875 -7.0561 20.7607526316 1.04879965725 1.06194689131 341 Best 341 341 0.0 0.0 ENST00000259711.10 CDSintron coding exon(s) KIF13A cassette exon 98 489038 chr11:76712696-76712815- NoOverlap chr11 76712696 76712815 - 10.3233074576 40 0.829842832074 0.346597597003 9.97670986056 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;76712695;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76712696-76712815-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A76712696-76712815&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08135807679 1.08101163197 1.0105935399 76423740 76423859 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;76423739;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76712696-76712815-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A76423740-76423859&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SNGPPLCPSQGMRYLHHHHFPPGCLKFQNCVVDRCFVLKVTDHGYAEPLDT Same 491027 chr11:76712696-76712815- 58 58 40 0 85 76712306 76719866 Best 98 98;1554;2355;2775;9069;9723;10637;30796 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:76712306-76719866&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.541666666667 0.0 12.141665 0.9798 -2.9953825 15.1370475 1.06957435539 0.983176679576 88 Best 88 88;186;1371;1479;2258;2338;2434;2689 54.553845 0.9871 10.8045825 43.7492625 0.95410269206 0.98816381522 1780 838 838;995;1128;1187;1347;1571;1780;2549 0.0 0.415063641541 chr17:8012450-8012606+ ENST00000525328.1 NC pseudogene extension GUCY2EP extended [ENSG00000204529] 99 531957 chr19:50808655-50808759- NoOverlap chr19 50808655 50808759 - 7.16610000346 35 0.695538479983 -5.79417714562 12.9602771491 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;50808654;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A50808655-50808759-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A50808655-50808759&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.823093057793 1.08100032787 0.919542714521 51311912 51312016 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;51311911;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A50808655-50808759-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A51311912-51312016&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPYISDSQPPNTCAHAGTSIVLGILFYLLQAHRYLQEGMTYQLALSFYLTWASVFLFLMTGMGEDEVGFGYGFR Same 533433 chr19:50808655-50808759- 70 70 29 0 86 50808166 50808759 Best 99 99;7318 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:50808166-50808759&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.580952380952 0.114379084967 12.5886257143 0.9291 -7.24948 19.8381057143 1.07101110543 0.927901314425 77 Best 77 77;2193 8.97534285714 0.4889 -15.5877085714 24.5630514286 0.993387232976 1.0677355865 1219 Best 1219 1219;3733 0.0 0.128630801859 chr15:74342977-74343137- pseudogene unitary pseudogene ENSG00000284711 100 585586 chr8:143771490-143771621+ NoOverlap chr8 143771490 143771621 + 6.44311598485 44 0.607861864236 -3.85477273031 10.2978887152 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143771489;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143771490-143771621%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143771490-143771621&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.708205262032 1.08097863413 0.977649811628 144853660 144853791 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144853659;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143771490-143771621%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144853660-144853791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPLPTPGPAEDRAARAIQGAFRQLRARRELARRREERREYLEQMETPQKEVR Same 586523 chr8:143771490-143771621+ 236 236 -136 0 77 143771490 143772485 87 87;100;935;6043 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143771490-143772485&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.75 0.882205513784 17.9335 0.8168 -3.8749 21.8084 1.06973030823 0.964421779469 85 3 3;85;342;2588 24.1910113636 0.6459 -3.19425 27.3852613636 1.04635011312 1.0218260739 384 320 320;384;705;2873 0.0 0.139115927098 chr21:33488227-33489393- ENST00000529743.1 AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 101 483255 chr11:1102416-1102649+ NoOverlap chr11 1102416 1102649 + 7.25641544588 78 0.620922662191 -2.85503326299 10.1114487089 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1102415;234;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1102416-1102649%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1102416-1102649&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.978251967129 1.08062711618 0.977296568914 1096324 1096557 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1096323;234;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1102416-1102649%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1096324-1096557&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTGGTAHSGSLAGYCTGWGDPHYVTFDGLYYSYQGNCTYVLVEEISPSVDNFGVYIDNYHCDPNDKVSCPRTLIVRHETQEVLIKTVHMMPMQVQVGTAWPQEAGMEAGADMGPNAPWFPR Same 485185 chr11:1102416-1102649+ 244 244 -143 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.598290598291 0.774193548387 20.7717230769 0.8589 0.165756410256 20.6059666667 0.950703180862 1.0260954814 1087 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 43.9381602564 0.915 -7.32367820513 51.2618384615 1.00854235445 1.04302829011 969 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0194919749486 chr11:1194110-1194360+ 0.33356396182 chr11:1194110-1194360+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 102 585507 chr8:141518215-141518568+ NoOverlap chr8 141518215 141518568 + 8.54533896759 118 0.53227761592 2.58820343321 5.95713553439 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;141518214;354;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A141518215-141518568%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A141518215-141518568&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.987823968072 1.08046841302 1.02598890687 142528315 142528668 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;142528314;354;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A141518215-141518568%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A142528315-142528668&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLSPPPAGPAAPPEPAFPDIYGGDAQLWEAHFRGIGRAYRALGKQDDFAIRVLTENFTLPFPFAWPPGSDPACGPLFYDPRDRADFDFLLRGPGASPPALLRPLHATAQAAMRKRRLERLALSCAR Same 586445 chr8:141518215-141518568+ 125 125 -23 0 87 141514697 141518615 Best 102 102;12541;53877 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:141514697-141518615&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.754237288136 1.07113496232 14.5394220339 0.8601 3.41326271186 11.126159322 1.02018019 1.04516764854 573 Best 573 573;2921;10965 16.2944635593 0.495 1.2895940678 15.0048694915 0.973931127673 0.976406726537 1525 Best 1525 1525;4375;7152 0.0 0.175928253684 chr17:35577038-35577591- ENST00000427937.1 NC protein-coding gene protein-coding gene ENSG00000226490 103 472934 chr1:78939653-78939799- NoOverlap chr1 78939653 78939799 - 6.18455914758 49 0.837425709583 -3.74167146002 9.92623060759 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;78939652;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A78939653-78939799-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A78939653-78939799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.934491141885 1.07998348543 0.983527891448 79405338 79405484 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;79405337;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A78939653-78939799-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A79405338-79405484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TFFQILVFPDIDECSESVACDDHSICENVNGGYNCSCKEGYQTSTGKSQFTHNDGAYCQCK Same 474813 chr1:78939653-78939799- 45 45 58 0 88 78939653 78939799 Best 103 103 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:78939653-78939799&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.421768707483 0.157051282051 10.365955102 0.9875 -3.73621632653 14.1021714286 1.05396969984 0.987770123422 210 Best 210 210 9.21061836735 0.7147 -9.70950816327 18.9201265306 0.924562796827 1.07009601909 1982 Best 1982 1982 0.0 0.0 ENST00000370742.3 CDSintron pseudo-exon ADGRL4 untranscribed pseudo-exon 104 726838 chr9:35471105-35471218+ Extension chr9 35471105 35471218 + 10.1596394213 38 0.87096328599 2.01406590092 8.14557352035 chr9:35471051-35471218+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35471104;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35471105-35471218%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35471105-35471218&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08622458218 1.0799593452 1.05364997148 35471102 35471215 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35471101;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35471105-35471218%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35471102-35471215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NTPAQARTTTLTEELGQVKYVFSDKTGTLTQNIMIFNKCSINGK Same 727430 chr9:35471105-35471218+ 55 55 49 0 89 35471105 35471218 Best 104 104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35471105-35471218&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.421052631579 0.398601398601 17.9866552632 1.0 3.91965526316 14.067 1.03900297532 1.02846690925 376 Best 376 376 53.3245052632 0.9985 18.1973684211 35.1271368421 0.951710455578 1.03199206194 1808 Best 1808 1808 0.0 0.258728442828 chr1:154340854-154341062+ ENST00000329395.12 NCintron pseudogene extension ATP8B5P pseudogene extension (ENSG00000179766) 105 481629 chr10:100117267-100117368- NoOverlap chr10 100117267 100117368 - 7.19839126924 34 0.715095211809 -5.89353522264 13.0919264919 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100117266;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100117267-100117368-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100117267-100117368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.838523385667 1.07986908184 0.920614075461 101877024 101877125 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101877023;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100117267-100117368-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101877024-101877125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWASLHEIQ**ITLLPSTLPSAVAQGLFRQCTIPKVR Same 483545 chr10:100117267-100117368- 61 61 44 9 90 100105748 100122651 Best 105 105;606;781;1442;2015;3184;14859;17791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100105748-100122651&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.529411764706 0.0 3.1609 0.7421 -10.8283382353 13.9892382353 0.692338875581 1.06073092469 2120 Best 2120 2120;2485;2770;2888;8530;10411;15939;19257 15.9347323529 0.5091 -16.4842470588 32.4189794118 1.06235405875 0.938774600577 209 Best 209 209;267;1101;3020;3409;3819;4117;17036 0.00226371968698 chr10:94724346-94724533+ 0.291323923645 chr10:133537063-133537250+ pseudogene unitary pseudogene ENSG00000283232 106 483227 chr11:1082479-1082631+ NoOverlap chr11 1082479 1082631 + 10.0143704997 51 0.663292029255 -1.01447848479 11.0288489845 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1082478;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1082479-1082631%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1082479-1082631&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05759467489 1.07979096222 0.946972171717 1080475 1080627 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1080474;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1082479-1082631%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1080475-1080627&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PCAPLPNSVCNAGRWVCKDLPCPGTCALEGGSHITTFDGKTYTFHGDCYYVLAKVGCPGSGAWGR Same 485157 chr11:1082479-1082631+ 139 139 -33 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.627450980392 0.468094405594 17.9129588235 0.9146 2.35564509804 15.5573137255 1.00183931301 0.972312694948 720 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 36.331454902 0.9311 -2.05482941176 38.3862843137 0.980378807205 0.961341171881 1415 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.165611856749 chr11:1029228-1029366- 0.32760997284 chr11:1165622-1165760+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 107 553600 chr3:141663155-141663280+ NoOverlap chr3 141663155 141663280 + 10.4209618199 42 0.77176136343 1.00309520108 9.41786661886 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;141663154;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141663155-141663280%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A141663155-141663280&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07274590962 1.07947461238 1.02208733166 141381997 141382122 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;141381996;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141663155-141663280%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A141381997-141382122&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAPLPIVLILQKFLKTYEKHCAQSQTSVCPAIKSDLKSSIDSDQVLRKVSVWSCFLILL Same 554549 chr3:141663155-141663280+ 69 69 38 0 71 141663155 141666935 80 80;107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:141663155-141666935&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.468253968254 0.4375 14.3977452381 0.9259 -2.31945714286 16.717202381 1.05936728752 0.953581609671 158 Best 158 158;505 16.4642238095 0.4416 -5.10709047619 21.5713142857 1.10550313087 1.05457923102 42 Best 42 42;2147 0.0 0.0 ENST00000474979.3 NC redundant PhyloCSF signals are accounted for elsewhere on the list 108 539421 chr2:86219982-86220122- NoOverlap chr2 86219982 86220122 - 7.29519576643 47 0.760601205463 -1.64884469151 8.94404045794 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;86219981;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A86219982-86220122-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A86219982-86220122&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.984944436403 1.07876652932 1.02103229045 86447105 86447245 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;86447104;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A86219982-86220122-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A86447105-86447245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVEGDVNEGGMKAWEPHQVQNPLAFSDDEEEDLLDFMYKYKAPRRMELPLEVHSVWGCGLECVCPK Same 540799 chr2:86219982-86220122- 68 68 40 0 91 86219982 86227399 Best 108 108;52390 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:86219982-86227399&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.510638297872 0.48 9.60827446809 0.9926 -1.7417106383 11.3499851064 1.04467860884 1.05322775388 314 Best 314 314;2548 7.89643404255 0.5876 -5.47564468085 13.3720787234 0.788770306081 0.992443546469 2523 Best 2523 2523;3260 0.0 0.0 ENST00000165698.9 CDSintron coding exon(s) REEP1 two cassette exons 109 500770 chr14:22550556-22550660+ NoOverlap chr14 22550556 22550660 + 9.04691433736 35 0.811631298434 -1.52724007118 10.5741544085 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22550555;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22550556-22550660%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22550556-22550660&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05128517306 1.07869249137 1.00123057884 23019500 23019604 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23019499;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22550556-22550660%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23019500-23019604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PLWPLGFTDTNLNFQNLSVIGFRILLLKVAGFNLLMTLRLWSS None NA NA 0 92 22478901 22550660 Best 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.514285714286 0.721153846154 12.55366 0.9861 -5.33490285714 17.8885628571 1.07592208206 0.943611740566 60 Best 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 16.8747542857 0.4302 -6.79753714286 23.6722914286 1.07571662012 1.05461508826 142 Best 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000611116.1 NC immunoglobulin segment overlaps an immunoglobulin region 110 564602 chr5:81087280-81087420+ NoOverlap chr5 81087280 81087420 + 7.05332983935 47 0.883076608406 -2.32330421057 9.37663404992 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;81087279;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A81087280-81087420%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A81087280-81087420&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01615614554 1.0782644466 1.0062752559 80383099 80383239 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;80383098;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A81087280-81087420%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A80383099-80383239&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAWPTAVAVPSADDTQAKAQEKLALLKALSHKTGDHVRSENSCLLFPFFISTSGSAPHDII Same 565590 chr5:81087280-81087420+ 62 62 48 0 93 81087178 81087420 Best 110 110;7460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:81087178-81087420&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.531914893617 0.516862170088 9.78640851064 0.995 -2.3447106383 12.1311191489 1.05189233488 1.03981714429 231 Best 231 231;3706 8.54453829787 0.5117 -6.13334680851 14.6778851064 0.845187032175 1.0183477945 2330 Best 2330 2330;12623 0.0 0.0 ENST00000502677.1,ENST00000265080.8,ENST00000503795.1 NC,CDSintron,NCintron coding exon(s) RASGRF2 alternative final coding exon 111 591077 chr9:136332004-136332153+ NoOverlap chr9 136332004 136332153 + 11.6311199522 50 0.609470969711 4.71259002179 6.91852993041 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136332003;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136332004-136332153%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136332004-136332153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06953938126 1.07826420912 1.04661531436 139226461 139226610 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139226460;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136332004-136332153%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139226461-139226610&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AWGLAMPSPAGEGPPLALSLAEKAVCKVVYGAPRPRPLLLPVGLELWLYVQKMR Same 592031 chr9:136332004-136332153+ 109 109 2 0 94 136327474 136332153 Best 111 111;48863;60868 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136327474-136332153&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.713333333333 0.577731092437 17.720516 0.7826 2.620972 15.099544 1.08270457649 0.981328107201 43 Best 43 43;41700;69026 33.383196 0.7043 0.202434 33.180762 0.94007070826 0.990415024061 1884 Best 1884 1884;42655;67049 0.0 0.0 ENST00000440944.5 CDSintron coding exon(s) GPSM1 5' coding exon 112 530382 chr19:17393823-17393969- NoOverlap chr19 17393823 17393969 - 5.94230815441 49 0.596247837656 -3.78122044248 9.7235285969 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;17393822;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A17393823-17393969-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A17393823-17393969&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.665432841357 1.07790982494 0.993190717886 17504632 17504778 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;17504631;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A17393823-17393969-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A17504632-17504778&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPEPGANATAPPGDPPPGVDDLRRRLAEAAEREEALARQLDQAESIRHELEKALKACEGRQVGGPGR Same 531845 chr19:17393823-17393969- 275 275 -163 0 95 17390521 17394161 Best 112 112;295;427;572;1325 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:17390521-17394161&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.687074829932 0.72952853598 14.7582367347 0.8796 -3.18312653061 17.9413632653 1.05416875191 0.930446513775 208 Best 208 208;465;468;696;802 16.094155102 0.316 -3.18157959184 19.2757346939 1.03380178316 1.04821560906 577 Best 577 577;1818;2051;2874;2932 0.0 0.0 protein-coding gene protein-coding gene ENSG00000269720 113 527308 chr19:12804115-12804279+ NoOverlap chr19 12804115 12804279 + 6.55111272552 55 0.774038855018 -4.97008005001 11.5211927755 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12804114;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12804115-12804279%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12804115-12804279&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.940958748536 1.07779131727 0.914549077112 12914929 12915093 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12914928;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12804115-12804279%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12914929-12915093&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLGVGPLHVGLHLCPPSLEVEDSILGPWGKWRCLCDLGKQERSREVVGTAPGPVFMDPEKLIQLRPCRQRDCPSCKPFDCDWR Same 528754 chr19:12804115-12804279+ 52 52 61 0 96 12775496 12806530 Best 113 113;1182;3126;12882;12916;19147;21814;28171;30495;34266;70783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12775496-12806530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.654545454545 0.739655172414 15.5107618182 0.9413 -2.44960545455 17.9603672727 0.988371645742 0.935430770105 845 Best 845 845;1545;3224;5434;8474;11177;11868;16562;28502;47510;67609 18.4444909091 0.384 -2.40478 20.8492709091 1.10626407755 1.04687180109 40 Best 40 40;3058;6466;7449;7608;8225;15095;31105;55016;67420;71961 0.0 0.0 ENST00000589765.1 AntiNCintron not annotated putative regulatory region 114 539488 chr2:88857601-88857675- NoOverlap chr2 88857601 88857675 - 6.81706803858 25 0.817640650034 -9.12349998474 15.9405680233 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;88857600;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88857601-88857675-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A88857601-88857675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.725038327064 1.07774313235 0.938905849797 89157114 89157188 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;89157113;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88857601-88857675-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A89157114-89157188&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPSCLLLSSGTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPR None NA NA 0 10 88857382 88861919 10 10;114;2592;3402;9296 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:88857382-88861919&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52 0.200534759358 11.810116 0.9871 -16.269772 28.079888 0.933958241086 1.10738103724 1171 79 79;1171;1739;3460;3823 33.747616 0.7481 -8.342892 42.090508 1.06089850446 0.966875521271 216 Best 216 216;1028;1387;2681;2825 0.0 0.241074915905 chr22:23573369-23573585- ENST00000377423.5,ENST00000624935.3 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 115 465070 chr1:43426391-43426525+ NoOverlap chr1 43426391 43426525 + 8.98087337017 45 0.828267168519 1.33697114057 7.6439022296 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;43426390;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A43426391-43426525%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A43426391-43426525&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07249693195 1.07759701377 1.05033641782 43892062 43892196 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;43892061;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A43426391-43426525%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A43892062-43892196&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEPEGVPFAEGSCPANDMVLCLLHSCLGQELSDREIPLTPVDQAAFLSEVLRRTCHVPGEFPTSS None NA NA 0 97 43426391 43426525 Best 115 115 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:43426391-43426525&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.659259259259 0.342987804878 8.44163555556 0.9988 -1.48971555556 9.93135111111 1.00468937576 1.06810108156 694 Best 694 694 23.3062 0.8781 -3.04596888889 26.3521688889 1.02815627752 1.02800241232 645 Best 645 645 0.0 0.0 ENST00000470139.1,ENST00000562955.1 NC,CDSintron coding exon(s) SZT2 cassette exon 116 493947 chr12:132509583-132509744+ NoOverlap chr12 132509583 132509744 + 6.66503158101 54 0.580049394019 -2.07725559285 8.74228717387 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132509582;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509583-132509744%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132509583-132509744&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.783301367789 1.0774211465 1.02057690245 133086169 133086330 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;133086168;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509583-132509744%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A133086169-133086330&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLLTPCHHCRRLRSLLAPRSLLVPCLYCRRLRFLLAPRHRCRRLRSLLTLWHRCRPLRPWASPCHCGQPGR Same 495938 chr12:132509583-132509744+ 286 286 -170 0 98 132509173 132510440 Best 116 116;202;637;794;2162;3860;16489;25303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132509173-132510440&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.771604938272 0.652524167562 12.5900611111 0.7141 -0.34712962963 12.9371907407 1.11931132365 1.00963910662 6 Best 6 6;93;263;1110;1440;2944;5926;7480 3.86412592593 0.4782 -11.6958907407 15.5600166667 0.740758451145 1.05373768189 2663 2003 2003;2026;2435;2663;4003;7601;8523;55779 0.0 0.0725886675369 chr3:184356993-184357094- ENST00000542061.2,ENST00000434748.2 NC,CDSintron coding exon(s) FBRSL1 alternative final coding exon 117 483226 chr11:1082284-1082403+ NoOverlap chr11 1082284 1082403 + 8.7846424818 40 0.600051880674 -1.6507047832 10.435347265 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1082283;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1082284-1082403%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1082284-1082403&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.904913457292 1.07712678476 0.987536575833 1080280 1080399 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1080279;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1082284-1082403%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1080280-1080399&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDIASLAVPGTVYDDIGDSGCVPVSQCHCRLHGHLYTPGQEITNDCEQW Same 485156 chr11:1082284-1082403+ 237 237 -120 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.616666666667 0.615384615385 22.59565 0.9033 2.57122 20.02443 1.0405898373 0.958865191596 359 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 47.043315 0.9502 -2.50357 49.546885 0.981120974282 0.95274828116 1403 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0837876086828 chr11:1165302-1165419+ 0.207869425376 chr11:1165302-1165419+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 118 470907 chr1:26171219-26171335- NoOverlap chr1 26171219 26171335 - 10.750938469 39 0.794147969474 2.56538195278 8.18555651624 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;26171218;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26171219-26171335-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A26171219-26171335&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07604697952 1.0764025614 1.05302815444 26497710 26497826 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;26497709;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26171219-26171335-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A26497710-26497826&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTPSVHLQMQVAGELKAEPRSLLAGVVATVLAVLGLGGSCYAVWKMVGQR None NA NA 0 99 26164164 26171664 Best 118 118;480;770;917;2190;2831;39672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:26164164-26171664&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.615384615385 0.288888888889 18.9501076923 0.9785 5.66977435897 13.2803333333 1.03309719905 1.0400788113 447 207 207;447;663;1046;1279;1936;69663 22.4119282051 0.4632 2.63023589744 19.7816923077 1.12909034248 1.03951329677 7 Best 7 7;93;1782;1970;2239;2545;42994 0.0 0.0 ENST00000407889.6,ENST00000270812.5 NC,AntiUTR3 protein-coding gene protein-coding gene ENSG00000282872 119 483243 chr11:1088255-1088500+ NoOverlap chr11 1088255 1088500 + 8.94487444311 82 0.587672012907 2.0010512493 6.94382319381 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1088254;246;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1088255-1088500%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1088255-1088500&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06115260113 1.07617568125 1.05107155037 1086244 1086489 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1086243;246;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1088255-1088500%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1086244-1086489&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VHQAGSLLQGGLPPCLPCPLLASPPPPALVFAGQAPVLPPAPFWSPCDACLLQGTVCGLCGNFDHRSNNDFTTRDHMVVSSELDFGNSWKEAPTCPDVSTNPEPCSLNPHRRSWAEKQCSILKSSVFSICHSKVGWPGHGGASR Same 485173 chr11:1088255-1088500+ 160 160 -41 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.634146341463 0.527809869615 16.8076036585 0.852 3.82668414634 12.9809195122 0.972773720624 1.02599007569 948 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 38.9659060976 0.9403 -4.2729902439 43.2388963415 1.01666357333 1.02669478606 826 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.109640332405 chr11:1024844-1025083- 0.345294236488 chr11:1178444-1178683+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 120 500528 chr13:113403390-113403497- NoOverlap chr13 113403390 113403497 - 9.28934444901 36 0.7644562278 -1.50682785445 10.7961723035 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;113403389;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113403390-113403497-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A113403390-113403497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04216669422 1.07611403734 0.991721861619 114057705 114057812 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;114057704;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113403390-113403497-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A114057705-114057812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRSRHLAKYKAQSFRDQRAFDLSFRPMSVRASDTSELPK None NA NA 0 100 113403390 113410417 Best 120 120;186;577;628;905;2155;43193 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:113403390-113410417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.601851851852 0.511363636364 14.9085305556 0.8124 1.31400555556 13.594525 1.04362719693 1.03334937156 325 Best 325 325;568;804;826;1027;2642;38380 12.6451333333 0.6005 -6.03766944444 18.6828027778 0.978461225077 1.05266457746 1448 110 110;511;615;1448;1864;2789;42035 0.0 0.0570150390324 chr1:223393476-223395347+ ENST00000612156.1 NC coding exon(s) ADPRHL1 alternative final coding exon 121 477287 chr10:47922753-47923091+ NoOverlap chr10 47922753 47923091 + 11.1458770596 113 0.831107204081 2.23621506673 8.90966199286 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;47922752;339;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A47922753-47923091%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A47922753-47923091&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0495806341 1.07529453777 1.03861200811 47087549 47087887 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;47087548;339;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A47922753-47923091%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A47087549-47087887&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTYSLRAGHMKQVNVVLVVMVVAFAVLWLPLHVFNSLEDWHHEAIPICHGNLIFLVCHLLAMASTCVNPFIYGFLNTNFKKEIKALVLTCQQSAPLEESEHLPLSTVHTEVSKGSLRLSGR Same 479180 chr10:47922753-47923091+ 87 87 34 0 101 47922111 47923091 Best 121 121;517 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:47922111-47923091&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.566371681416 0.147535632684 14.4675902655 0.8718 3.49389026549 10.9737 1.02243956984 1.0485422042 553 Best 553 553;590 39.3282256637 0.9517 4.05073185841 35.2774938053 1.00382509239 1.03557981791 1054 1000 1000;1054 0.950356625061 chr10:46461508-46462635- 0.989946149756 chr10:46461508-46462635- ENST00000576178.6,ENST00000479781.5 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000264717 122 487333 chr11:16815166-16815297- NoOverlap chr11 16815166 16815297 - 9.4341499902 44 0.941239240656 1.7453863694 7.6887636208 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;16815165;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A16815166-16815297-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A16815166-16815297&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07291171348 1.07492311422 1.05083835256 16836713 16836844 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;16836712;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A16815166-16815297-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A16836713-16836844&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPCAVSTHLQLEELSLLLTRLRRHQAKLASVRNFAISQLLQHQLTFPTCQVSTGGLLSGPGAGSDMLAR Same 489305 chr11:16815166-16815297- 100 100 22 0 102 16807082 16815297 Best 122 122;22826;24982 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:16807082-16815297&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.590909090909 0.441176470588 11.3026681818 0.9998 -0.856963636364 12.1596318182 1.06450309015 1.03969823604 113 Best 113 113;21779;41496 18.1578977273 0.8624 -6.78637727273 24.944275 1.01965496106 1.03575892529 790 Best 790 790;6548;32924 0.0 0.0 ENST00000355661.7,ENST00000525781.5 CDSintron,NCintron coding exon(s) PLEKHA7 multiple coding exons 123 488724 chr11:67524212-67524376- NoOverlap chr11 67524212 67524376 - 7.83536361537 55 0.713683319808 -1.22286726683 9.05823088221 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;67524211;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67524212-67524376-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A67524212-67524376&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00077869244 1.07458737383 1.00493565571 67291683 67291847 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;67291682;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67524212-67524376-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A67291683-67291847&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YQALISMAQPQGPAEGSLPTGDPSPSEGTPGTSQAPGSPAATRRRELLRELEAQVQAAYGQVMR Same 490712 chr11:67524212-67524376- 123 123 0 0 103 67524212 67524376 Best 123 123 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:67524212-67524376&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.733333333333 0.318181818182 12.16496 0.9685 -2.70370363636 14.8686636364 1.01831669436 0.963123564978 585 Best 585 585 9.55908727273 0.4718 -7.19175454545 16.7508418182 0.92557650056 1.04943529746 1973 Best 1973 1973 0.0 0.0858632839424 chr11:67627946-67628251- coding exon(s) CABP2 alternative first exon 124 540198 chr2:135027538-135027678- NoOverlap chr2 135027538 135027678 - 9.43167870603 47 0.892775827112 2.35461064476 7.07706806127 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;135027537;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A135027538-135027678-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A135027538-135027678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06702562956 1.07428706568 1.05051671645 135785108 135785248 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;135785107;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A135027538-135027678-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A135785108-135785248&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASEEFLDINFPNQHGLTPLMLAVRDVDLFESLDMLTVYKPVEVLSQLLRHHA Same 541560 chr2:135027538-135027678- 66 66 58 0 104 135024648 135040536 Best 124 124;489;494;8049 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:135024648-135040536&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.460992907801 0.0 15.3764042553 0.9818 4.11639361702 11.2600106383 1.0424168835 1.04417434227 338 Best 338 338;436;793;1657 14.2934829787 0.3987 1.12204893617 13.1714340426 0.91268308503 0.96817832369 2042 1904 1904;2042;3035;3818 0.0 0.0 ENST00000414343.1,ENST00000468155.5 UTR5intron,NCintron pseudo-exon MAP3K19 has three upstream coding exons in other species, although in human the second has a non-variant premature termination codon, so the gene had been made to use a downstream ATG. It has been maintained as coding due to PMID:27144281 125 543323 chr20:36206368-36206505+ NoOverlap chr20 36206368 36206505 + 9.21172613132 46 0.837668222423 2.13073691855 7.08098921277 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;36206367;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36206368-36206505%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A36206368-36206505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07136035519 1.073385621 1.05096680439 34794290 34794427 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;34794289;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36206368-36206505%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A34794290-34794427&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLEEPHTCGRPTAPGTRPAEVDVLSPASDKGGLQSFLLDPAHAEARAELSNETDTSFAERSFYLNYEEKDSEDQVLPPPLEER Same 544712 chr20:36206368-36206505+ 63 63 62 0 105 36205843 36208375 Best 125 125;723;906;1185;1244;1425;3209;4167;4835;30161 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:36205843-36208375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.449275362319 0.432601880878 12.9813847826 0.9647 1.82358478261 11.1578 1.05832031462 1.04750043347 172 Best 172 172;398;1291;1366;1423;1562;1733;1995;6918;10311 11.1804565217 0.5747 -3.83540652174 15.0158630435 0.918004918725 1.0148381438 2023 1508 1508;2023;2148;2169;2610;3152;3488;3607;4506;5668 0.0 0.0 ENST00000202028.9 CDSintron coding exon(s) EPB41L1 three consectutive cassette exons 126 559042 chr4:55820027-55820143+ NoOverlap chr4 55820027 55820143 + 12.3539050328 39 0.860393252382 5.71039235745 6.6435126754 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;55820026;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A55820027-55820143%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A55820027-55820143&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05927471073 1.0732493914 1.03834997024 56686193 56686309 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;56686192;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A55820027-55820143%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A56686193-56686309&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSGQVELEEMSSLVKEDLEKKLFKPLSQNLYEFIEIEFSVQDRYYLCVSGNLFLLLSFQK Same 560027 chr4:55820027-55820143+ 72 72 54 0 106 55820027 55837348 Best 126 126;431;821 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:55820027-55837348&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.42735042735 0.576354679803 19.9507384615 0.9914 7.58201025641 12.3687282051 1.03041335138 1.05040593818 476 Best 476 476;785;846 28.5029025641 0.514 7.57855128205 20.9243512821 1.11773071419 1.04054472803 20 Best 20 20;1015;1453 0.0 0.0 ENST00000504250.1 NC protein-coding gene protein-coding gene ENSG00000250821 127 565266 chr5:127941235-127941354+ NoOverlap chr5 127941235 127941354 + 10.3600299239 40 0.861799420157 -2.3767650336 12.7367949575 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;127941234;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A127941235-127941354%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A127941235-127941354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08312782289 1.07318031859 0.935248050324 127276927 127277046 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;127276926;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A127941235-127941354%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A127276927-127277046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TAQTFLFLFALEDSLLEGFCGGLPPVEEGDRKISLIMELSTQVSLQTERITQLKEVLEEKERKIQQLEAER Same 566257 chr5:127941235-127941354+ 91 91 36 0 107 127941235 127941354 Best 127 127 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:127941235-127941354&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.0 15.8525025 0.9946 -3.5183475 19.37085 1.05343197735 0.938336329278 216 Best 216 216 10.82171 0.4829 -9.6615325 20.4832425 1.00579721473 1.07066898888 1018 Best 1018 1018 0.0 0.0 ENST00000513708.1,ENST00000499346.6 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000230561 128 510828 chr16:19307548-19307676+ NoOverlap chr16 19307548 19307676 + 9.57532093938 43 0.724970679612 1.7020139611 7.87330697828 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;19307547;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A19307548-19307676%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A19307548-19307676&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0577725245 1.07300497608 1.05029851988 19318870 19318998 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;19318869;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A19307548-19307676%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A19318870-19318998&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSSWLASLSLWVEPSQEGQFEWTDGSSYDYSYWDGSQPDDGVHADPEEEDCVQIWYRPTSGGYP Same 512466 chr16:19307548-19307676+ 107 107 21 0 108 19307548 19309068 Best 128 128;1594 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:19307548-19309068&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.558139534884 0.405979543666 10.7386186047 0.783 -2.0363372093 12.774955814 1.04600092609 1.0307406839 302 Best 302 302;2581 33.6349674419 0.7266 7.2033255814 26.4316418605 0.981592947016 1.04281071076 1398 287 287;1398 0.0 0.0 ENST00000468219.1,ENST00000493231.5 NC,CDSintron coding exon(s) CLEC19A alternative final coding exons 129 526657 chr19:1525592-1525714+ NoOverlap chr19 1525592 1525714 + 11.4120097742 41 0.732491854101 1.67210242915 9.73990734503 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;1525591;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1525592-1525714%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A1525592-1525714&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06925247454 1.07297568163 1.02009440536 1525591 1525713 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;1525590;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1525592-1525714%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A1525591-1525713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASCSLCPAAGGYMSGPCLQVEREIALHSRLRPRNIVAFHGHFADRDHVYMVLEYCSRQVPR Same 528102 chr19:1525592-1525714+ 116 116 13 0 61 1524154 1533821 68 68;129;412;744;947;2039;3059;9713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:1524154-1533821&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.626016260163 0.82995951417 21.2336487805 0.9187 -0.427946341463 21.661595122 1.04951690061 0.955045825358 265 205 205;265;523;631;1057;1237;1482;2663 45.4323609756 0.8931 -14.5762390244 60.0086 0.998445319411 1.01663092144 1129 449 449;648;739;1129;1230;1261;1334;1921 0.0 0.34384077395 chr5:58458725-58458841- ENST00000334770.8 UTR5 pseudo-exon PLK5 pseudo exons 130 566419 chr5:170681069-170681185+ NoOverlap chr5 170681069 170681185 + 11.2002154061 39 0.73283252441 2.29911546524 8.90109994091 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;170681068;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A170681069-170681185%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A170681069-170681185&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06884834141 1.07284436457 1.04419916884 170108073 170108189 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;170108072;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A170681069-170681185%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A170108073-170108189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MWAEGESEGLQTLGIVVVVCSSLKLLHYLGLIDLSDGKR Same 567417 chr5:170681069-170681185+ 112 112 18 0 109 170681069 170681185 Best 130 130 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:170681069-170681185&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.684210526316 20.5922 0.9771 3.13800769231 17.4541923077 1.02539583503 0.978488350215 520 Best 520 520 29.0077128205 0.594 4.7003025641 24.3074102564 1.07202070533 1.04913651259 159 Best 159 159 0.0 0.0 ENST00000328939.8,ENST00000390656.8,ENST00000523591.1 CDSintron,UTR5intron,AntiNC coding exon(s) KCNIP1 first exon 131 536448 chr2:200750467-200750577+ NoOverlap chr2 200750467 200750577 + 10.5038351787 37 0.925184603235 2.50581879592 7.99801638279 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;200750466;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A200750467-200750577%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A200750467-200750577&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08035063821 1.07201153431 1.05531738153 201615190 201615300 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;201615189;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A200750467-200750577%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A201615190-201615300&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIDVSKALELPEVVDVITAEDIPGTNGAEGDKLLAVDK Same 537814 chr2:200750467-200750577+ 92 92 39 0 110 200750467 200750577 Best 131 131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:200750467-200750577&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.477477477477 0.321739130435 14.4182405405 0.9739 4.38776216216 10.0304783784 1.06225800018 1.04988383066 128 Best 128 128 24.2617459459 0.7568 5.11993783784 19.1418081081 1.05758911566 1.03041909171 242 Best 242 242 0.0 0.205675529508 chr2:200621120-200621246+ ENST00000472376.2,ENST00000487742.5 NC,NCintron pseudogene extension AOX2P unitary pseudogene exon added (ENSG00000243478) 132 531040 chr19:37831567-37831674- NoOverlap chr19 37831567 37831674 - 6.3354972899 36 0.78862779007 -4.17120285332 10.5067001432 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37831566;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37831567-37831674-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37831567-37831674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.850679737737 1.07149165533 0.992534018657 38322207 38322314 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38322206;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37831567-37831674-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38322207-38322314&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLGTVPCHFSTSCLFYDPEAELLLSGTLGAVVTWFILPNGMGIEMAQIVPMADHELVQGFSLNGPQGSLLALCEDTVR Same 532507 chr19:37831567-37831674- 85 85 47 0 111 37829091 37833481 Best 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.518518518519 0.138461538462 14.0484138889 0.9204 -2.483225 16.5316388889 1.05889256181 0.971753543455 168 Best 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 22.0689694444 0.4701 -3.016 25.0849694444 1.11385543245 1.04629149963 28 Best 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.172977582642 chr19:37892578-37895456- 0.51250335596 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 133 494076 chr12:2855144-2855269- NoOverlap chr12 2855144 2855269 - 16.5889786113 42 0.856425319804 1.54252143701 15.0464571743 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2855143;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2855144-2855269-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2855144-2855269&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03652461408 1.07127340092 0.98562277967 2964310 2964435 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2964309;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2855144-2855269-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2964310-2964435&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIHPWKGGAQHTWGFHTWLDVCRLPATFPTQPDRPYDSNVWRWLTDSNAHR Same 496070 chr12:2855144-2855269- 101 101 32 0 6 2849327 2855413 6 6;133;515;985;1632;2840;5109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2849327-2855413&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.650793650794 0.45652173913 31.4531666667 0.9838 7.27975714286 24.1734095238 1.04900193434 0.998490636242 270 26 26;270;287;599;1474;2001;2776 36.9794785714 0.4376 5.85718095238 31.122297619 0.994337722655 1.02277419838 1206 189 189;675;1206;2115;2904;3470;3931 0.0 0.0 ENST00000537710.5 AntiNCintron protein-coding gene protein-coding gene ENSG00000283297 134 466285 chr1:92166967-92167083+ NoOverlap chr1 92166967 92167083 + 9.82747433583 39 0.95719844358 1.66888197607 8.15859235976 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;92166966;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A92166967-92167083%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A92166967-92167083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07540735476 1.07085008145 1.0521589258 92632524 92632640 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;92632523;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A92166967-92167083%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A92632524-92632640&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NAAFLLMESDRLIISLPRVKWTEAALTMASQLQEKCIAFIVDNFSK Same 468145 chr1:92166967-92167083+ 140 140 -6 0 112 92166967 92168865 Best 134 134;7051;73484 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:92166967-92168865&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.435897435897 0.363354037267 16.4578923077 0.9792 2.15923846154 14.2986538462 1.0466059916 1.01746411104 296 Best 296 296;3225;48415 30.2258512821 0.728 -0.132112820513 30.3579641026 1.00866940927 1.01929466608 966 Best 966 966;2739;40536 0.0 0.0 ENST00000370378.4 UTR5 coding exon(s) Readthrough' protein-coding transcript added between BTBD8 and KIAA1107 containing 3 new coding exons; actually shows that this is really one locus, with HGNC retaining the BTBD8 symbol 135 465044 chr1:42793600-42793740+ NoOverlap chr1 42793600 42793740 + 10.5921446339 47 0.835062635038 3.2764341641 7.31571046976 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;42793599;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42793600-42793740%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A42793600-42793740&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05068573992 1.07077362378 1.05012685638 43259271 43259411 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;43259270;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42793600-42793740%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A43259271-43259411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSISSSNLGPSGAGAELNDFAVFTTFGLASALLLGVDGLLSGILAIIYVSAASFHLCFYSPGEWNQGCLR Same 466904 chr1:42793600-42793740+ 74 74 61 0 113 42789876 42798195 Best 135 135;762;863;3977;11957 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:42789876-42798195&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539007092199 0.491289198606 18.3908319149 0.9948 7.26583617021 11.1249957447 1.01198771736 1.04473428683 636 541 541;636;1178;1669;3207 41.0535914894 0.7864 11.6791255319 29.3744659574 0.935349180301 1.0280024452 1912 279 279;926;1615;1912;2144 0.0 0.0744802131631 chr19:51015882-51016156- ENST00000421630.5 NC protein-coding gene protein-coding gene ENSG00000274386 136 499774 chr13:51085432-51085560- NoOverlap chr13 51085432 51085560 - 12.2859187078 43 0.819800532646 5.30059541103 6.98532329673 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51085431;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51085432-51085560-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51085432-51085560&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04417178157 1.0705995402 1.04873236215 51659568 51659696 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;51659567;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51085432-51085560-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A51659568-51659696&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPPHLAYVPIFNGHIFHCIPPAPQLQSQICFAWLLGTWLPTPISCECSVQSALSFALCASQWQALPSWVTCFSLLVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHR Same 501781 chr13:51085432-51085560- 81 81 55 0 114 51084157 51088078 Best 136 136;145;366;1264;1713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51084157-51088078&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.604651162791 0.680290046144 22.2597023256 0.9846 12.5863837209 9.67331860465 1.02461108818 1.0375912024 534 291 291;534;600;1000;1249 40.3548953488 0.8129 14.8510255814 25.5038697674 0.960776109373 1.04447972359 1688 408 408;1257;1688;3102;3151 0.0 0.0 ENST00000433280.6 NC protein-coding gene protein-coding gene ENSG00000226792 137 492181 chr12:57619773-57619886+ NoOverlap chr12 57619773 57619886 + 12.2042763516 38 0.815335718559 4.48068934424 7.72358700731 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;57619772;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57619773-57619886%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A57619773-57619886&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06425066155 1.07038281896 1.05481907362 58013556 58013669 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;58013555;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57619773-57619886%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A58013556-58013669&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLARLPALHWLPHYRWRAWLLGDAVAGVTVGIVHVPQGERP Same 494162 chr12:57619773-57619886+ 89 89 48 0 115 57604808 57624781 Best 137 137;276;887;2361;32008;57382;64750;68543 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:57604808-57624781&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.728070175439 0.736780258519 14.2048289474 0.9064 1.76785 12.4369789474 1.05242160635 1.04539387146 227 192 192;198;227;1040;9332;22257;31301;59213 33.8226631579 0.8363 0.135618421053 33.6870447368 0.990756785173 1.0026817031 1268 667 667;1211;1268;2339;27890;29446;30873;52552 0.0 0.211832546832 chr3:48633251-48633390- ENST00000474359.6 NC coding exon(s) SLC26A10 alternative final exon 138 508585 chr15:41157178-41157345- NoOverlap chr15 41157178 41157345 - 8.80364997046 56 0.436144808118 0.312532134354 8.49111783611 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;41157177;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A41157178-41157345-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A41157178-41157345&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.826548600316 1.0701045677 1.0217422052 41449376 41449543 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;41449375;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A41157178-41157345-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A41449376-41449543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFLNLCYYSHSSVSHMALFIVPILIQIP*SFTGAIILIIAHGLTLSLLFCLANSNYERIHNRIISNLASSNLPSLASQSAGITCVCHR Same 510305 chr15:41157178-41157345- 434 434 -296 22 116 41157178 41157345 Best 138 138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:41157178-41157345&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.392857142857 0.347107438017 2.25717857143 0.1041 -0.218657142857 2.47583571429 0.0643164193858 0.696847607572 20533 Best 20533 20533 35.6355946429 0.5833 7.72685535714 27.9087392857 0.926348757744 1.02539659522 1967 Best 1967 1967 0.0 0.755134956004 chrM:10760-12137+ pseudogene mitochondrially encoded NADH dehydrogenase 4 (MT-ND4) pseudogene (ENSG00000283133) 139 531043 chr19:37833371-37833481- NoOverlap chr19 37833371 37833481 - 3.17308382408 37 0.762487550494 -8.77714594313 11.9502297672 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37833370;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37833371-37833481-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37833371-37833481&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.252224608233 1.07003738656 0.942884702202 38324011 38324121 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38324010;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37833371-37833481-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38324011-38324121&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NDVVLLSDWPETLYRESHHPQNKPFVCFYYSIKVNCFVSLNWMEPCGK Same 532510 chr19:37833371-37833481- 56 56 83 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.477477477477 0.165178571429 3.69055945946 0.8691 -14.7588837838 18.4494432432 0.958869703409 0.922074868011 1042 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 7.89461621622 0.429 -17.2805135135 25.1751297297 0.983382659691 1.06354162012 1366 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.168967263375 chr19:37896138-37896308- 0.341592792743 chr19:37896138-37896308- ENST00000433142.6 NC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 140 578350 chr7:73735729-73735848+ NoOverlap chr7 73735729 73735848 + 11.8123449981 40 0.781881055924 4.99058501087 6.82175998725 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;73735728;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A73735729-73735848%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A73735729-73735848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06576686547 1.06984583081 1.04488725637 73150059 73150178 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;73150058;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A73735729-73735848%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A73150059-73150178&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KQAVEAELQRCKARLHAMEAQLLEVLEEKLRLRRELEAWEVGECHQGLGGVGK Same 579391 chr7:73735729-73735848+ 96 96 44 0 117 73735456 73743100 Best 140 140;963;2258;15809 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:73735456-73743100&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.658333333333 0.348330914369 16.2656 1.0 2.9880075 13.2775925 1.04768349897 1.03250359412 284 Best 284 284;1112;1678;4016 23.3295975 0.6516 -1.2367525 24.56635 1.07730578547 1.0448744884 136 Best 136 136;2383;2522;8559 0.0 0.0958703961645 chr12:120089951-120090071+ ENST00000427153.1 NC pseudogene unitary pseudogene ENSG00000225969 141 553603 chr3:141681521-141681628+ NoOverlap chr3 141681521 141681628 + 10.0833027479 36 0.822424404262 1.54871950167 8.53458324621 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;141681520;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141681521-141681628%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A141681521-141681628&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07616163606 1.06976387931 1.05214127424 141400363 141400470 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;141400362;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141681521-141681628%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A141400363-141400470&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHTTCPFTTLEIIDCKMDLWSLERLGKALRFSSLHSLVLDYCK Same 554552 chr3:141681521-141681628+ 90 90 51 0 32 141681521 141685950 32 32;141;656 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:141681521-141685950&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 0.664615384615 14.6559222222 0.91 -0.0401222222222 14.6960444444 1.05171772466 1.01202268568 236 145 145;236;970 16.9602277778 0.4752 -5.41616388889 22.3763916667 1.08931359601 1.05658998829 81 33 33;81;2337 0.0 0.0 ENST00000474979.3 NC pseudogene unitary pseudogene ENSG00000242104 142 557715 chr3:183400367-183400471- NoOverlap chr3 183400367 183400471 - 7.12059713517 35 0.882321115217 -2.81024864571 9.93084578088 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;183400366;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A183400367-183400471-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A183400367-183400471&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.972816933307 1.06973920292 1.01646123439 183118155 183118259 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;183118154;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A183400367-183400471-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A183118155-183118259&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CEQQDPRYSPYTLVRITEAEMRAYHRLVGSCIRLEYMAK Same 558686 chr3:183400367-183400471- 117 117 25 0 118 183400367 183400471 Best 142 142 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:183400367-183400471&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.495238095238 0.318181818182 9.76985714286 0.9653 -1.62917428571 11.3990314286 0.996873548523 1.06268634034 772 Best 772 772 15.6919685714 0.5742 -2.12131714286 17.8132857143 1.01642903693 1.03251950441 830 Best 830 830 0.0 0.0 ENST00000459750.5,ENST00000328913.7,ENST00000482017.1 NC,CDSintron,UTR5intron coding exon(s) MCF2L2 5' coding exons 143 571884 chr6:60283565-60283705+ NoOverlap chr6 60283565 60283705 + 9.14639793875 47 0.857069715874 2.42558715318 6.72081078557 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;60283564;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60283565-60283705%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A60283565-60283705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06887267488 1.06951751238 1.04826169505 57246826 57246966 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;57246825;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60283565-60283705%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A57246826-57246966&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LILPVSLLIQIPFADALDLFRGRKVYLEGGFAYVPLKDIVAIILNEFRAKLSKALAVSILLYFCI Same 572909 chr6:60283565-60283705+ 75 75 68 0 119 60281444 60283705 Best 143 143;1888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:60281444-60283705&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.439716312057 0.298412698413 15.1239893617 0.9489 3.99610212766 11.127887234 1.04941086583 1.04516031114 266 Best 266 266;2263 33.0418914894 0.89 3.13276595745 29.9091255319 0.982770575412 1.01832833681 1383 Best 1383 1383;3010 0.970497949667 chr6:57382031-57382168+ 0.937688578811 chr6:57382031-57382168+ pseudogene DNA primase subunit 2 (PRIM2) unprocessed pseudogene (ENSG00000283453) 144 469208 chr1:225275914-225276060+ NoOverlap chr1 225275914 225276060 + 5.30355710521 49 0.807285404434 -4.59800823421 9.90156533942 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;225275913;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A225275914-225276060%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A225275914-225276060&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.805717123884 1.0692623032 0.989836417763 225463616 225463762 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;225463615;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A225275914-225276060%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A225463616-225463762&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IQWTQENLMNHSTVFLDFLDINKTHRKKIYQNTSDYNKLASVLDEFQMK Same 471088 chr1:225275914-225276060+ 71 71 73 0 120 225275914 225277481 Best 144 144;1252 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:225275914-225277481&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 9.58514081633 0.9539 -6.96245714286 16.5475979592 1.06531057657 0.923836108961 106 Best 106 106;1073 10.1140265306 0.4652 -9.83584897959 19.9498755102 1.00504678888 1.07048981473 1031 Best 1031 1031;1629 0.0 0.0 ENST00000327794.10,ENST00000430092.5 NC,CDSintron coding exon(s) DNAH14 two cassette exons 145 499773 chr13:51085309-51085428- NoOverlap chr13 51085309 51085428 - 11.1345799595 40 0.820658426795 0.64036494717 10.4942150123 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51085308;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51085309-51085428-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51085309-51085428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0729440868 1.0690375823 0.999354173284 51659445 51659564 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;51659444;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51085309-51085428-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A51659445-51659564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STEHRTVGTQRRLERHPIYLPKAVEGAFNTWKFKPKACKKE*VLGLNSMTK Same 501780 chr13:51085309-51085428- 105 105 40 2 114 51084157 51088078 136 136;145;366;1264;1713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51084157-51088078&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.516666666667 0.25078369906 15.8206925 1.0 1.39207 14.4286225 1.04686546372 1.01036725929 291 Best 291 291;534;600;1000;1249 32.181185 0.8075 1.7302025 30.4509825 0.991225045462 1.02196354337 1257 408 408;1257;1688;3102;3151 0.0 0.0 ENST00000433280.6 NC protein-coding gene protein-coding gene ENSG00000226792 146 572511 chr6:109239409-109239516+ NoOverlap chr6 109239409 109239516 + 8.66038894984 36 0.750234395531 -1.36675563041 10.0271445803 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109239408;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109239409-109239516%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109239409-109239516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00861320516 1.06870849628 1.01386301424 109560612 109560719 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109560611;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109239409-109239516%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109560612-109560719&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLGLAFFLQVHSVQFMEFSEVENQDDYYSTEAGCIHTQDQQGVHVMYEEALSDLKELEAELLLVASHYIEKER Same 573538 chr6:109239409-109239516+ 137 137 9 0 121 109239409 109242294 Best 146 146;1777 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109239409-109242294&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.490740740741 0.0 15.7235416667 0.9806 -1.774625 17.4981666667 1.06021416101 0.963022485615 150 Best 150 150;1259 26.3067305556 0.7908 -10.9282166667 37.2349472222 1.03310113057 0.925994954986 583 Best 583 583;701 0.0 0.0 ENST00000453496.2 NC pseudogene unitary pseudogene CCDC162P (ENSG00000203799) 147 549536 chr22:21011391-21011492- NoOverlap chr22 21011391 21011492 - 6.17969990292 34 0.748502596278 -5.32896471812 11.508664621 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21011390;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21011391-21011492-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21011391-21011492&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.760591249839 1.06852301209 0.961506254602 21365680 21365781 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21365679;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21011391-21011492-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21365680-21365781&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MQLSGNGLEEQAAQHLAELLLAHTDLKSLDLSYNQLNDQAGNACAGHHGHESSASWGR Same 550893 chr22:21011391-21011492- 106 106 41 0 122 21011391 21013083 Best 147 147;1701;4461;19244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21011391-21013083&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.627450980392 0.2 9.05265882353 0.9322 -7.94527352941 16.9979323529 1.03317755128 0.9507655334 445 Best 445 445;1499;1647;3817 11.7950117647 0.5792 -13.6209617647 25.4159735294 1.03579109912 1.05225190269 542 Best 542 542;1095;2798;3696 0.822883292867 chr22:21048951-21049157+ 0.824736437354 chr22:21048951-21049157+ ENST00000292748.7,ENST00000591411.5 NC,AntiNCintron pseudogene TUBA3FP transcribed unprocessed pseudogene (ENSG00000161149) 148 473856 chr1:120641608-120641754- NoOverlap chr1 120641608 120641754 - 9.2634428253 49 0.90136568246 1.81504494742 7.44839787787 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;120641607;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120641608-120641754-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A120641608-120641754&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05814420088 1.06848445128 1.04856215558 145015860 145016006 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;145015859;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120641608-120641754-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A145015860-145016006&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TFFFCCSVSLTAFLSDTKDRGPPVQSQIWRSGEKVPFVQTYSLRAFEKPPQVQTQALRDFEK Same 475735 chr1:120641608-120641754- 88 88 60 0 123 120641608 120641754 Best 148 148 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:120641608-120641754&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.496598639456 0.331578947368 12.4021612245 0.9475 1.1299877551 11.2721734694 1.05189172048 1.04392783283 232 Best 232 232 13.8476795918 0.3394 2.29464693878 11.5530326531 0.807385154244 0.931486825329 2448 Best 2448 2448 0.987932690153 chr1:148868471-148868643+ 0.989362653841 chr1:148868471-148868643+ redundant PhyloCSF signals are accounted for elsewhere on the list 149 577936 chr7:37796802-37796888+ NoOverlap chr7 37796802 37796888 + 7.60834479897 29 0.910882576565 -4.22611731188 11.8344621109 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;37796801;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796802-37796888%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A37796802-37796888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.922812967429 1.06799781404 0.975682330593 37836404 37836490 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;37836403;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796802-37796888%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A37836404-37836490&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASNLVLYNEIYVALTTVCCLDMLCFLSGVIH* Same 578975 chr7:37796802-37796888+ 169 169 -20 0 34 37796070 37796888 35 35;91;149;575;1403;9158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:37796070-37796888&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.32183908046 0.483333333333 9.43661724138 0.9723 -4.11065862069 13.5472758621 0.964667108088 1.04523271537 1005 34 34;142;466;1005;2248;12157 21.161262069 0.6264 -3.3325 24.493762069 1.07478743706 1.05481141241 146 Best 146 146;436;833;961;1880;4101 0.0 0.279412990239 chr7:37740394-37741311+ ENST00000476620.1,ENST00000461610.5 UTR5intron,NCintron pseudogene unitary pseudogene ENSG00000283444 150 561221 chr4:17875681-17875779- NoOverlap chr4 17875681 17875779 - 10.4162881049 33 0.977065227695 -1.37801516779 11.7943032727 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17875680;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17875681-17875779-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17875681-17875779&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04626100122 1.06794110675 0.981373736625 17877304 17877402 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17877303;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17875681-17875779-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17877304-17877402&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DNSSSATDPSFKRKPGRPKKIGPQVVKQIKRPIGRPPKPK Same 562212 chr4:17875681-17875779- 207 207 -57 0 124 17873404 17884833 Best 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.383838383838 0.27731092437 15.2216787879 0.9985 2.19938181818 13.0222969697 1.06698892789 1.04767931036 102 Best 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 38.3260090909 0.9094 11.7680878788 26.5579212121 1.00238341769 1.05226503241 1074 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 151 468821 chr1:210016022-210016150+ NoOverlap chr1 210016022 210016150 + 12.9009324271 43 0.877394823643 7.76078377941 5.14014864765 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;210016021;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A210016022-210016150%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A210016022-210016150&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03249912242 1.0679185866 0.983154593242 210189367 210189495 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;210189366;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A210016022-210016150%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A210189367-210189495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NFQQNLPSVSSLVDTISSAVEDLTTAVGEVSYALTDSVAEQVTSMMSGFRPEEESSVAEEAVDTSK Same 470698 chr1:210016022-210016150+ 113 113 38 0 125 210016022 210016150 Best 151 151 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:210016022-210016150&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.46511627907 0.0 18.1653186047 0.8877 12.0345604651 6.13075813953 1.04027421271 0.929149964984 361 Best 361 361 37.9922093023 0.7426 23.6244093023 14.3678 1.03045292554 0.947938264125 617 Best 617 617 0.0 0.0 ENST00000367015.5,ENST00000399639.6 CDSintron,NCintron coding exon(s) SYT14 first coding exon 152 527000 chr19:6396383-6396484+ NoOverlap chr19 6396383 6396484 + 10.9487117327 34 0.883706506178 -1.91378523672 12.8624969695 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;6396382;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6396383-6396484%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A6396383-6396484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07342368279 1.06768190898 0.957925171206 6396394 6396495 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;6396393;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6396383-6396484%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A6396394-6396495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DFVQCHSGTPVPLQALTHLPHSSWAPQTFSSPPWMGGPGCGKGTQCKNMATKYGFCHVGLDQLLRQEAQR Same 528446 chr19:6396383-6396484+ 127 127 25 0 18 6396383 6424885 18 18;152;1552;1681;2470;11355;12316;12885;15770;20124;36825 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:6396383-6424885&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.607843137255 0.335526315789 14.3710382353 0.9024 -3.65923823529 18.0302764706 1.05210698762 0.9540942737 228 Best 228 228;1347;1830;2200;3049;3131;9882;24431;37923;50538;67562 26.4834735294 0.5413 -4.82710882353 31.3105823529 1.05856291669 1.00729102977 237 Best 237 237;2087;2298;2594;2633;2795;14442;22727;50962;60088;60354 0.0 0.279438173881 chr9:127872690-127872853- ENST00000596254.1,ENST00000593563.1 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 153 483129 chr10:132810586-132810723- NoOverlap chr10 132810586 132810723 - 6.83824137242 46 0.607035735966 -2.42660878356 9.26485015598 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;132810585;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A132810586-132810723-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A132810586-132810723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.776906957227 1.06691927496 1.01282021863 134624090 134624227 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;134624089;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A132810586-132810723-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A134624090-134624227&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPGPHSASQLSLEEPVEAAILLSLVGVKSILANQWPTLLQDNALRASVLWESAWAPGIPGLSR Same 485059 chr10:132810586-132810723- 308 308 -155 0 126 132808795 132810723 Best 153 153;2303;3525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:132808795-132810723&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.659420289855 0.668604651163 14.7731695652 0.8474 -4.33572608696 19.1088956522 1.07894939527 0.928836059281 54 Best 54 54;1929;2271 20.2008847826 0.5377 -6.4861 26.6869847826 1.09719450957 1.01816779425 58 Best 58 58;2379;2936 0.0 0.104261828537 chr22:25947712-25947828+ ENST00000368586.9 CDSintron coding exon(s) CFAP46 multiple cassette exons 154 480311 chr10:24706509-24706607- NoOverlap chr10 24706509 24706607 - 10.4598967776 33 0.85961191221 -2.60228174383 13.0621785214 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;24706508;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24706509-24706607-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A24706509-24706607&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06774440143 1.06680222258 0.953127582767 24995438 24995536 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;24995437;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24706509-24706607-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A24995438-24995536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEMQTVL*AVMAQFRILDCMINHNWSLLCNLYCAWSGQVCFISVYVYICFLIQNCYDV Same 482220 chr10:24706509-24706607- 126 126 28 2 127 24706509 24706607 Best 154 154 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:24706509-24706607&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.0 15.8869575758 0.9987 -4.50032121212 20.3872787879 1.07456882461 0.94732454961 62 Best 62 62 25.8939636364 0.7405 -6.04745454545 31.9414181818 1.04820475534 1.00017622173 355 Best 355 355 0.0 0.0 ENST00000320481.10,ENST00000472150.1 CDSintron,NCintron coding exon(s) ARHGAP21 alternative first exon 155 561019 chr4:6008293-6008562- NoOverlap chr4 6008293 6008562 - 6.46267776092 90 0.560439120741 -0.98959111977 7.45226888069 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;6008292;270;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6008293-6008562-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A6008293-6008562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.888372504357 1.06679716608 1.0543605988 6010020 6010289 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;6010019;270;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6008293-6008562-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A6010020-6010289&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TMVCPLGLLTPSSTANL*IREESVARRQQWRLRRLQERLRRKDEALGQQAAALERCRRTQRRQLGLVREQERVLREQVQRLERNVRRLCRAAGLLLAQWDTAAPGSQGATEAAAELR Same 562009 chr4:6008293-6008562- 181 181 -26 10 128 6008014 6018431 Best 155 155;465;689;1797;5236 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:6008014-6018431&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.755555555556 0.846394984326 5.52188777778 0.6827 -7.47152333333 12.9934111111 0.93387311194 1.03934874257 1173 256 256;423;1173;1484;2527 5.60080888889 0.5045 -15.0041155556 20.6049244444 0.853172535801 1.1217537062 2304 2 2;2247;2302;2304;3145 0.0 0.275446351207 chr3:99848274-99850955- coding exon(s) C4orf50 5' exons 156 503452 chr14:23103672-23103818- NoOverlap chr14 23103672 23103818 - 8.81838166957 49 0.89538321165 1.5830815842 7.23530008537 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23103671;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23103672-23103818-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23103672-23103818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06050153555 1.06677232241 1.05016132406 23572881 23573027 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23572880;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23103672-23103818-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23572881-23573027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSFSPTPHTQFPTVPAPLLMQHFTPCQIPDTHLRGYALWPEQGPPQLVQPDGPGVQNTDFLLYVRVAHTSKCHQEVK Same 505291 chr14:23103672-23103818- 95 95 61 0 129 23090103 23104878 Best 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.56462585034 0.343859649123 11.4835836735 0.9228 -0.409448979592 11.8930326531 1.05027208784 1.0368680955 257 Best 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 21.9363040816 0.6233 -0.150191836735 22.0864959184 1.0704376994 1.04466199684 168 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 157 500668 chr14:21852723-21852881+ NoOverlap chr14 21852723 21852881 + 5.9569076041 53 0.853207633542 -11.0313246126 16.9882322167 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21852722;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21852723-21852881%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21852723-21852881&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.916955476606 1.06665431335 1.06203688612 22320900 22321058 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22320899;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21852723-21852881%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22320900-22321058&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQSVTQPDIHITVSEGASLELRCNYSYGATPYLFWYVQSPGQGLQLLLKYFSGDTLVQGIK None NA NA 0 130 21846938 21869364 Best 157 157;319;1640;6119;15880;30074 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21846938-21869364&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.534591194969 0.0908571428571 10.3714924528 0.8525 -13.7323962264 24.1038886792 1.09755772509 1.05192780926 19 Best 19 19;1154;2028;2765;4576;5725 17.9480754717 0.4626 -17.943054717 35.8911301887 1.02246579917 0.844845248405 746 Best 746 746;1536;2871;3379;4344;4897 0.0 0.0 ENST00000390435.1 NC immunoglobulin segment overlaps an immunoglobulin region 158 485757 chr11:94528083-94528205+ NoOverlap chr11 94528083 94528205 + 8.95773176958 41 0.866035836371 2.06737815752 6.89035361206 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;94528082;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A94528083-94528205%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A94528083-94528205&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08307563546 1.06627579588 1.04882283572 94261249 94261371 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;94261248;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A94528083-94528205%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A94261249-94261371&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILTVALEGIWSIKRNLPVGGLKPGLPSRNSLLPQAKYYSRHGGLR Same 487715 chr11:94528083-94528205+ 93 93 65 0 131 94512607 94528205 Best 158 158;244;57951 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:94512607-94528205&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.536585365854 0.231203007519 9.89386097561 0.9283 1.17464878049 8.71921219512 0.965975321374 1.04402232647 996 888 888;996;10637 12.5909292683 0.585 -2.22000487805 14.8109341463 0.927080133005 1.001656114 1960 1869 1869;1960;13464 0.0 0.0 ENST00000542198.1 NC protein-coding gene protein-coding gene ENSG00000257057 159 549312 chr22:50546280-50546414+ NoOverlap chr22 50546280 50546414 + 12.8620444775 45 0.86457991065 7.20824889474 5.65379558272 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50546279;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50546280-50546414%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50546280-50546414&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02009979702 1.06595477944 1.01316494881 50984709 50984843 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;50984708;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50546280-50546414%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A50984709-50984843&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TMIQGTLEPDGPLWGWDWDSDNDWDSAVLALLALAVVAATALALHWFGSGHDQEAAEPVSTALGAQPHQAGGAELALQPK Same 550684 chr22:50546280-50546414+ 115 115 44 0 132 50546280 50548166 Best 159 159;2208;2547;11730 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50546280-50548166&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.644444444444 0.445054945055 16.6622822222 0.9152 7.74596444444 8.91631777778 1.05898995482 1.03325372551 163 Best 163 163;1188;1930;2331 15.79838 0.4762 4.70550444444 11.0928755556 0.914874284498 0.908906705681 2034 Best 2034 2034;2111;2881;2938 0.0 0.0792686889093 chr6:43058039-43058233- coding exon(s) KLHDC7B 5' extension 160 559070 chr4:56511191-56511313+ NoOverlap chr4 56511191 56511313 + 9.52533180103 41 0.947150563746 2.67703913915 6.84829266188 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;56511190;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56511191-56511313%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A56511191-56511313&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07769729246 1.06559196265 1.04785502265 57377357 57377479 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;57377356;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56511191-56511313%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A57377357-57377479&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLESK Same 560055 chr4:56511191-56511313+ 151 151 9 0 133 56511191 56511313 Best 160 160 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:56511191-56511313&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.520325203252 0.0 13.4889 0.9932 1.13347317073 12.3554268293 1.06663802377 1.04073706103 104 Best 104 104 38.916497561 0.8765 4.01147560976 34.9050219512 0.968057933743 1.00012088156 1602 Best 1602 1602 0.0 0.317521855915 chr5:176366380-176366581+ ENST00000360096.2 UTR5 coding exon(s) ARL9 5' extension 161 548900 chr22:41696892-41696996+ NoOverlap chr22 41696892 41696996 + 10.7821371215 35 0.85020218204 -5.98533712626 16.7674742477 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;41696891;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41696892-41696996%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A41696892-41696996&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07650967762 1.06551893816 1.00255803911 42092896 42093000 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;42092895;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41696892-41696996%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A42092896-42093000&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTGLKKSKRLLLESLMRRRIAHLKWGLPRRILESYFLFNFLGSCSLTLAGAR Same 550270 chr22:41696892-41696996+ 77 77 84 0 134 41696892 41696996 Best 161 161 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:41696892-41696996&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.590476190476 0.4375 17.27204 1.0 -7.88086 25.1529 1.08118170723 1.02925993259 46 Best 46 46 20.3864371429 0.3845 -8.11119714286 28.4976342857 1.06656760597 1.01613433974 185 Best 185 185 0.0 0.11580659315 chr9:34723232-34726988- ENST00000402966.1 UTR3 pseudo-exon C22orf46 has a premature termination codon, and the signal follows downstream; maintained as coding as this is a minor truncation 162 519385 chr17:78031515-78031838+ NoOverlap chr17 78031515 78031838 + 9.25881106048 108 0.834633741088 4.20617220399 5.05263885649 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;78031514;324;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A78031515-78031838%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A78031515-78031838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05951079439 1.06484871633 1.00044637955 76027596 76027919 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;76027595;324;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A78031515-78031838%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A76027596-76027919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFGFFCLSFILVPEPTKTCSSQPQPAGTSTSTSTSTISSSNNGKRASASGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPTGTLTSVSPTQGAGPAGVSPPPLPGAGTQHHPSKLQPGK Same 520790 chr17:78031515-78031838+ 147 147 15 0 135 78031515 78031838 Best 162 162 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:78031515-78031838&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.301816488123 15.6774148148 0.9917 6.26385277778 9.41356203704 1.05266703767 1.04020358405 226 Best 226 226 30.1671055556 0.8866 6.83317685185 23.3339287037 1.04138978035 1.02347821719 459 Best 459 459 0.0 0.148038786183 chr16:24776933-24777358+ ENST00000301624.8 UTR5 coding exon(s) TNRC6C alternative first coding exons 163 478236 chr10:96980833-96980943+ NoOverlap chr10 96980833 96980943 + 11.5075052824 37 0.950392919814 4.12178363671 7.38572164565 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;96980832;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A96980833-96980943%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A96980833-96980943&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06745990272 1.06449920189 1.05191066725 98740590 98740700 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;98740589;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A96980833-96980943%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A98740590-98740700&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVDSNNQSKSPLEKFMVKLCTHHQKQFIRVLNDLYTESQPGTEDLQPSDSGAMDVSTCNAGCAQLSTK Same 480130 chr10:96980833-96980943+ 133 133 30 0 136 96980833 96981009 Best 163 163;11339 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:96980833-96981009&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.441441441441 0.566326530612 15.1368540541 1.0 4.76559459459 10.3712594595 1.07320654462 1.05222333634 65 Best 65 65;2071 29.7406216216 0.7796 6.0828 23.6578216216 1.03873045485 1.05018354146 496 Best 496 496;2397 0.0 0.0 ENST00000498444.5 NC coding exon(s) LCOR alternative final exon; overlaps single exon gene C10orf12 and thus allows for the two to be merged 164 558276 chr4:2625247-2625393+ NoOverlap chr4 2625247 2625393 + 17.7345489604 49 0.839565086735 3.04385311506 14.6906958454 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;2625246;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A2625247-2625393%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A2625247-2625393&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01337581118 1.06441381202 0.974714034655 2626974 2627120 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;2626973;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A2625247-2625393%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A2626974-2627120&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVYSVLFLKQSQDFLLHSSLGGSQPEAGSGGRLALGAQTLPSDTACSCEACSER Same 559250 chr4:2625247-2625393+ 129 129 35 0 137 2625247 2631004 Best 164 164;491;1030 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:2625247-2631004&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.598639455782 0.607751937984 23.5624959184 0.9025 3.85577142857 19.7067244898 1.02365913545 0.948549305349 544 Best 544 544;670;989 32.1742163265 0.7296 4.66961836735 27.5045979592 0.956988184314 1.03069945874 1740 1524 1524;1546;1740 0.0 0.0 ENST00000509050.5,ENST00000508235.1 UTR5,NC coding exon(s) FAM193A 5' extended by 4 new coding exons 165 523266 chr17:76568896-76569063- NoOverlap chr17 76568896 76569063 - 13.2664250625 56 0.590575101636 5.03432325008 8.23210181243 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;76568895;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A76568896-76569063-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A76568896-76569063&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04940088022 1.0642325206 1.0264064331 74564978 74565145 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;74564977;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A76568896-76569063-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A74564978-74565145&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPPPPPDSLYLPLLPPPPHHPQFNCPFPTPPGLFMPPSSLSYTPPVEVLVSGKPHVVPNVLPATFYTPFSRYYSQPRSYRSGYR None NA NA 0 14 76568812 76569633 14 14;165;11638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:76568812-76569633&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.697964270877 29.3706625 0.9129 12.2235321429 17.1471303571 1.03831013639 0.978057150737 381 Best 381 381;894;3731 28.8919625 0.4509 10.0868571429 18.8051053571 1.11636365789 1.02282532926 23 Best 23 23;501;4311 0.0 0.0352767033768 chr17:76570565-76570668- ENST00000589997.1,ENST00000225276.9,ENST00000592979.1 NC,CDSintron,NCintron protein-coding gene protein-coding gene ENSG00000284526 166 466590 chr1:110228565-110228696+ NoOverlap chr1 110228565 110228696 + 8.10889546895 44 0.816637882603 0.569129643792 7.53976582516 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;110228564;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A110228565-110228696%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A110228565-110228696&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05288226086 1.06405331291 1.05235272989 110771187 110771318 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;110771186;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A110228565-110228696%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A110771187-110771318&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLNNIVGAAGTSLGLSPLASRYSLPYPLKKFLLTPFHPLTGPPPGHSAP Same 468450 chr1:110228565-110228696+ 103 103 63 0 138 110228004 110230556 Best 166 166;58328;63100;67233 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:110228004-110230556&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.636363636364 0.25730994152 13.1337886364 0.9991 1.57186136364 11.5619272727 1.06454015396 1.04600875022 112 Best 112 112;26525;33496;69315 19.3345909091 0.8389 -3.07802272727 22.4126136364 1.02525033503 1.048554309 695 Best 695 695;10859;41544;59966 0.0 0.386284538297 chr12:75043105-75043241- ENST00000369787.7,ENST00000412512.2 CDSintron,NCintron coding exon(s) KCNC4 alternative final exon 167 585771 chr8:8715416-8715499- NoOverlap chr8 8715416 8715499 - 4.43716078518 28 0.787215119511 -8.80787143005 13.2450322152 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;8715415;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A8715416-8715499-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A8715416-8715499&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.411603538901 1.06401699233 0.925158720439 8572926 8573009 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;8572925;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A8715416-8715499-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A8572926-8573009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCAVEQEDAAAFSVLKEPYIKKMIILADNQEVAS Same 586708 chr8:8715416-8715499- 51 51 116 0 139 8702390 8719546 Best 167 167;2129;3075;3753;6028;26012 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:8702390-8719546&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.488095238095 0.205882352941 5.09775714286 0.8477 -11.04405 16.1418071429 0.797127425056 1.00143137883 1679 Best 1679 1679;1680;2137;2318;4483;35378 5.28928214286 0.3164 -12.9495178571 18.2388 0.578448480898 1.06314922428 3236 2793 2793;3236;3426;3823;4475;30167 0.0 0.0 pseudogene unitary pseudogene ENSG00000284717 168 556807 chr3:128916104-128916211- NoOverlap chr3 128916104 128916211 - 11.6369414859 36 0.903785509016 -0.0325556132529 11.6694970992 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;128916103;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A128916104-128916211-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A128916104-128916211&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07170981135 1.06386898958 0.984030287654 128634947 128635054 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;128634946;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A128916104-128916211-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A128634947-128635054&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VIKISAPANKAVYNYSTQTMNSTELAKKELYQEIAKVR Same 557776 chr3:128916104-128916211- 145 145 23 0 140 128916104 128916211 Best 168 168 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:128916104-128916211&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.453703703704 0.181818181818 18.384725 0.9165 -1.16803888889 19.5527638889 1.04837160231 0.953541356739 278 Best 278 278 26.8854722222 0.638 -2.98130833333 29.8667805556 1.05479331526 1.01918600791 270 Best 270 270 0.0 0.0 ENST00000508239.1 CDSintron coding exon(s) KIAA1257 cassette exon 169 562902 chr4:149548480-149548587- NoOverlap chr4 149548480 149548587 - 6.06652225471 36 0.802666937938 -4.26365284373 10.3301750984 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;149548479;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149548480-149548587-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A149548480-149548587&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.829201790589 1.0633900994 0.999543659482 150469632 150469739 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;150469631;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149548480-149548587-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A150469632-150469739&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NIFFYIFVLLVYEIMFAKREDWPKIERNELPNFFSDCGHFPTQKQVDDTWDLVHQGE Same 563898 chr4:149548480-149548587- 120 120 49 0 141 149548480 149563850 Best 169 169;941;3606;10164 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:149548480-149563850&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.37037037037 0.0 13.8412194444 0.9988 -2.56050555556 16.401725 1.07135039846 0.973382183728 74 Best 74 74;1345;1356;2019 14.2419166667 0.5541 -11.1285916667 25.3705083333 1.07727989362 1.04501713387 137 Best 137 137;2480;3119;3323 0.0 0.0 ENST00000506683.5 NC protein-coding gene protein-coding gene ENSG00000234828 170 598862 chr1:19173095-19173121+ Extension chr1 19173095 19173121 + 2.4760999812 9 0.943755245289 -14.8183112476 17.2944112288 chr1:19172864-19173121+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;19173094;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A19173095-19173121%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A19173095-19173121&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.611426344098 1.06334755256 0.898899526301 19499589 19499615 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;19499588;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A19173095-19173121%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A19499589-19499615&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DEIFKNMQNIISCGNGLW Same 599572 chr1:19173095-19173121+ 287 287 -117 0 142 19165221 19173121 Best 170 170;73766 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:19165221-19173121&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.148148148148 0.0 -1.90635555556 0.9933 -31.2470444444 29.3406888889 0.169096150592 0.945446759156 10342 Best 10342 10342;58463 -5.56508888889 0.5884 -37.8252555556 32.2601666667 0.228273357325 1.03357501538 5582 Best 5582 5582;50003 0.0 0.0 ENST00000375254.7,ENST00000419533.1 AntiCDSintron,AntiNCintron not annotated potentially spurious 171 492632 chr12:92729000-92729110+ NoOverlap chr12 92729000 92729110 + 9.02372164823 37 0.879490018744 1.31719448438 7.70652716385 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;92728999;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A92729000-92729110%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A92729000-92729110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07822525176 1.06329868807 1.05474399933 93122776 93122886 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;93122775;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A92729000-92729110%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A93122776-93122886&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FYEHRRSSVVLNLPGLEVFPGDLLVSDGAADYLCHPLLLLNSGSVHSVYFHSMPTVEQILP Same 494614 chr12:92729000-92729110+ 118 118 53 0 143 92729000 92737518 Best 171 171;1005;1408 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:92729000-92737518&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.558558558559 0.233193277311 10.7482405405 0.9762 2.36421351351 8.38402702703 0.992370300146 1.02592082692 811 Best 811 811;1591;1673 25.7510162162 0.7034 6.46857027027 19.2824459459 1.07478157332 1.02967642057 147 Best 147 147;1020;1931 0.0 0.0 ENST00000549856.5 UTR5 coding exon(s) PLEKHG7 extended CDS significantly at 5' end, previous truncated domain now intact. 172 588991 chr9:38469846-38469956+ NoOverlap chr9 38469846 38469956 + 10.7415756487 37 0.96749828336 2.48811880539 8.25345684326 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;38469845;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A38469846-38469956%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A38469846-38469956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06808090373 1.06293526252 1.05445536747 38469843 38469953 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;38469842;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A38469846-38469956%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A38469843-38469953&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAHSVSGPVSPAFELLIGGIEVGLSHFPFFACLSSEFQLVSSILGFCYSDLVR Same 589935 chr9:38469846-38469956+ 179 179 -7 0 144 38456161 38469956 Best 172 172;271;22158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:38456161-38469956&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.558558558559 0.355769230769 14.0819621622 0.9431 1.11491351351 12.9670486486 1.05652054855 1.03984057474 185 Best 185 185;508;3383 21.1599675676 0.4754 0.750408108108 20.4095594595 1.11655273577 1.04495414279 21 Best 21 21;39;2913 0.0 0.0 pseudogene STRA6-like (Stra6l) pseudogene (ENSG00000283162) 173 495286 chr12:51814681-51814833- NoOverlap chr12 51814681 51814833 - 11.376182389 51 0.535780162374 5.27443922852 6.10174316051 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;51814680;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51814681-51814833-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A51814681-51814833&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04338198098 1.06280009631 1.03539159783 52208465 52208617 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52208464;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51814681-51814833-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52208465-52208617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLASALVLTLWVWALAPAGAVDAMGPHAAVRLAELLTPEECGHFRSLLEAPEPDVEAELSRLSEDRLARPEPLNTTSGSPSR Same 497284 chr12:51814681-51814833- 248 248 -75 0 145 51807534 51814833 Best 173 173;1274;1566;23248;41728 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:51807534-51814833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.725490196078 0.94567338972 18.5133960784 0.8901 8.96412941176 9.54926666667 1.04692548101 1.03666823363 290 Best 290 290;1358;1512;2640;66049 18.8900039216 0.5356 0.286709803922 18.6032941176 1.09395019926 1.03772944616 69 Best 69 69;2037;2228;5219;35256 0.0 0.180193843112 chr1:156676482-156677264- protein-coding gene protein-coding gene ENSG00000284730 174 506520 chr15:42374287-42374400+ NoOverlap chr15 42374287 42374400 + 12.5654131394 38 0.916309886642 3.32583154424 9.23958159513 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;42374286;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A42374287-42374400%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A42374287-42374400&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05875745086 1.06270701608 1.0441058837 42666485 42666598 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;42666484;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A42374287-42374400%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A42666485-42666598&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFAMPYLLSGFFCDCVIQERDRRNGEGTIAQPLKFEGQDFVVLK Same 508236 chr15:42374287-42374400+ 128 128 46 0 146 42374287 42374531 Best 174 174;1415 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:42374287-42374531&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.535087719298 0.125274725275 15.0046157895 0.9624 2.38432105263 12.6202947368 1.05974202312 1.04391189695 152 Best 152 152;2371 32.5044789474 0.6716 5.20477631579 27.2997026316 1.01601577048 1.04481776443 835 Best 835 835;1135 0.0 0.140496378763 chr2:31205223-31205447- ENST00000318023.11,ENST00000466369.5 CDSintron,NCintron pseudo-exon CAPN3 alternative first coding exon is pseudogenised compared to other paralogs and orthologs 175 491118 chr12:40570464-40570604+ NoOverlap chr12 40570464 40570604 + 11.0308594907 47 0.950188708648 -6.22833830055 17.2591977912 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40570463;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40570464-40570604%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40570464-40570604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0378027559 1.06267527296 1.0951286512 40964266 40964406 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40964265;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40570464-40570604%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40964266-40964406&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YNYDILLLEHSCLCCREENYELRDIVLDCPDGSTIPYQYKHITTCSCLDICQLYTTFMYS Same 493095 chr12:40570464-40570604+ 312 312 -137 0 19 40565645 40570604 19 19;175;252;1193;1558 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40565645-40570604&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.404255319149 0.360613810742 17.3537382979 0.9405 -6.88411914894 24.2378574468 1.06304615499 1.05089977504 121 Best 121 121;362;478;1515;1847 19.1367 0.3658 -7.57268723404 26.709387234 1.12385670908 1.01523296907 12 Best 12 12;169;2094;3099;3273 0.0 0.0 ENST00000427572.2 NC known assembly issue MUC19 has a known sequence error; the CDS cannot yet be annotated 176 520817 chr17:29128029-29128415- NoOverlap chr17 29128029 29128415 - 9.98606278753 129 0.785522381969 1.95452864254 8.03153414499 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;29128028;387;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29128029-29128415-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A29128029-29128415&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.989500526454 1.06258437288 1.03218270394 27455047 27455433 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;27455046;387;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29128029-29128415-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A27455047-27455433&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPAPTLAMNGPGAATAEGLSEEAQGLSRKRVANAVRKVVSKVLPSEELGNAKETPGRGVKSPEHPTRSKRGEKAASSPKPPPPPPPPPAPPKPEVKKEAAKDELSLGLRSLMSRGRGKEHKARGKQSSGKGEKPSSQEPGSPDWADSPEK Same 522235 chr17:29128029-29128415- 161 161 15 0 147 29124548 29133836 Best 176 176;1108;2567;6559;7208;9587 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:29124548-29133836&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.64857881137 0.320568370078 18.063575969 0.9504 5.12381860465 12.9397573643 1.02814634685 1.0361400027 498 Best 498 498;1507;2077;2179;3115;4205 34.2975379845 0.737 9.0913503876 25.2061875969 1.04177329056 1.00240508258 450 Best 450 450;1147;2200;2400;2550;3310 0.0 0.0118057452559 chr7:149808484-149808654+ ENST00000527372.5,ENST00000528322.6 CDSintron,NCintron coding exon(s) MYO18A alternative first exon plus four cassette exons 177 499779 chr13:51111024-51111131- NoOverlap chr13 51111024 51111131 - 11.0369306058 36 0.774712409823 2.77030282716 8.26662777861 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51111023;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51111024-51111131-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51111024-51111131&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06807386263 1.06235651298 1.05539384863 51685160 51685267 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;51685159;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51111024-51111131-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A51685160-51685267&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR Same 501786 chr13:51111024-51111131- 146 146 31 0 148 51110832 51111907 Best 177 177;694;1207;6306 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51110832-51111907&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.675 20.7250194444 0.982 5.50951388889 15.2155055556 1.03261381703 1.02350037575 453 Best 453 453;1104;1293;4715 44.6135944444 0.8988 14.1672805556 30.4463138889 0.964804813263 1.04333026287 1636 Best 1636 1636;1803;1976;7599 0.0 0.0 ENST00000433280.6 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 178 491107 chr12:40443266-40443388+ NoOverlap chr12 40443266 40443388 + 16.6795976969 41 1.0 0.276546140996 16.4030515559 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40443265;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40443266-40443388%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40443266-40443388&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04237223101 1.06223905791 1.00398347072 40837068 40837190 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40837067;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40443266-40443388%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40837068-40837190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ICLNLQDQNIVLQDGKVTAVKSTESKKCELNANAYSIHTVGLYLILK Same 493084 chr12:40443266-40443388+ 164 164 14 0 149 40419182 40446630 Best 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.357723577236 0.254132231405 18.1850780488 0.9825 -1.94214146341 20.1272195122 1.03963704512 0.945530489422 368 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 20.1933 0.8279 -17.2327853659 37.4260853659 1.02749119724 0.847161655434 652 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.222758654884 chr11:1177454-1177633+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 179 547638 chr21:36962033-36962167- NoOverlap chr21 36962033 36962167 - 11.5370978461 45 0.803786271967 2.8300732207 8.70702462544 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;36962032;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A36962033-36962167-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A36962033-36962167&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04735719823 1.06217849715 1.03639101122 38334333 38334467 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;38334332;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A36962033-36962167-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A38334333-38334467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLWQLWYEVTISLYFFPSIQSIEDLNKWALFLVSPFILEAEHIAFVTESIWVQSENLQRSSSSETVSTMFTCVP Same 549043 chr21:36962033-36962167- 124 124 55 0 150 36962033 36966698 Best 179 179;3891 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:36962033-36966698&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4 0.1875 21.2013244444 0.9568 6.78264888889 14.4186755556 0.99971320135 1.01481078219 741 Best 741 741;6738 26.0198822222 0.5555 4.19864444444 21.8212377778 1.10207665975 1.04441603712 48 Best 48 48;4678 0.0 0.0 ENST00000336648.8 UTR5 redundant PhyloCSF signals are accounted for elsewhere on the list 180 552033 chr3:46617165-46617326+ NoOverlap chr3 46617165 46617326 + 12.8746629854 54 0.618357451065 4.10475742541 8.76990555999 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;46617164;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A46617165-46617326%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A46617165-46617326&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0535946489 1.06170438621 1.0186823452 46658655 46658816 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;46658654;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A46617165-46617326%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A46658655-46658816&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFLHMFFGYLYGYFPF*GMNNQYTRREVFCRNTCHDLKHFWEREIGKQTYYRESEERRLGRSALR Same 552971 chr3:46617165-46617326+ 188 188 -8 6 70 46617165 46625248 79 79;180 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:46617165-46625248&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.487654320988 0.732558139535 21.9978092593 0.9258 8.26276666667 13.7350425926 0.98053916918 1.00664854804 896 326 326;896 25.1922092593 0.4419 7.32606481481 17.8661444444 1.13370362699 1.0204725392 5 Best 5 5;2539 0.0 0.0 ENST00000444264.1 NC protein-coding gene protein-coding gene ENSG00000283473 181 584203 chr8:54758925-54759074+ NoOverlap chr8 54758925 54759074 + 9.1721799159 50 0.847074387732 0.094069892168 9.07811002374 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;54758924;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54758925-54759074%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A54758925-54759074&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05508109888 1.06155878756 1.01125003244 55671485 55671634 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;55671484;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54758925-54759074%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A55671485-55671634&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLVISVGFFLCLLHQIDKFQVAAVSLGKLQKVLLRCEASDKSQYWYCEQVIVREPGTTSESIFTCQR Same 585134 chr8:54758925-54759074+ 110 110 71 0 151 54755618 54769789 Best 181 181;217;1058 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:54755618-54769789&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.486666666667 0.451127819549 12.595448 0.9486 -4.002222 16.59767 1.04103294546 0.93322649544 351 330 330;351;2145 19.69039 0.6948 -7.206406 26.896796 1.03207033949 1.01163918798 593 Best 593 593;733;2531 0.0 0.0 ENST00000521465.1 NCintron coding exon(s) RP1 massive extension 3'; 28 exons vs existing 3 exon model. However, the 3 exon CDS is actually longer. 182 584692 chr8:78647092-78647292+ NoOverlap chr8 78647092 78647292 + 5.62570444122 67 0.424774046909 -5.49886704359 11.1245714848 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78647091;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78647092-78647292%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78647092-78647292&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.526472517635 1.06135682235 0.932117071613 79559327 79559527 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79559326;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78647092-78647292%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79559327-79559527&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EKLEHIQCLVQEQLDAGHIEPTTSPWNTPIFTIPKRSGKWRLLYDLHAINAVMFPMGPL*PGLPSPVMIPK Same 585623 chr8:78647092-78647292+ 417 417 -235 7 152 78644641 78649262 Best 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.417910447761 0.114204545455 -1.16433134328 0.0306 -1.5226641791 0.358332835821 -0.00626358390809 0.431435468317 44857 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 14.5482850746 0.1607 -0.533937313433 15.0822223881 0.671652587241 1.0095002194 2928 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 183 582685 chr7:135307197-135307313- NoOverlap chr7 135307197 135307313 - 13.8438307658 39 0.830304417487 5.67761279375 8.16621797207 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;135307196;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A135307197-135307313-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A135307197-135307313&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04579113293 1.0613087939 1.05474424628 134991949 134992065 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;134991948;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A135307197-135307313-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A134991949-134992065&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EWSWRPQHHMPAPLTLCPQHFLTALGGLMAVPFILAKDLCLQQDPLTQSYLISTIFFAPASACSCK Same 583647 chr7:135307197-135307313- 136 136 47 0 153 135307168 135310600 Best 183 183;3391;20071 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:135307168-135310600&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.598290598291 0.100775193798 15.9811538462 0.9997 4.63821538462 11.3429384615 1.06388276373 1.05329258727 118 Best 118 118;1627;2784 43.004825641 0.9993 8.87009230769 34.1347333333 0.958999021815 1.01624149855 1711 597 597;1421;1711 0.0 0.0748131043851 chr5:139381913-139382049- pseudogene solute carrier family 23 (ascorbic acid transporter), member 1 (SLC23A1) pseudogene (ENSG00000276067) 184 491262 chr12:48764850-48764993+ NoOverlap chr12 48764850 48764993 + 7.57737290611 48 0.84690623331 -0.213845789122 7.79121869523 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;48764849;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A48764850-48764993%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A48764850-48764993&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03737746374 1.06114470292 1.04769024755 49158633 49158776 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49158632;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A48764850-48764993%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49158633-49158776&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PALPPTHSVPNQVFRIPLTDAQNFSFWWSHDPGVRPEETMPWIRSPRHCLIKSAMTR Same 493239 chr12:48764850-48764993+ 104 104 80 0 154 48759259 48773560 Best 184 184;484;2240;4028 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:48759259-48773560&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.534722222222 0.492476060192 9.36655833333 1.0 -1.1464375 10.5129958333 1.03701395298 1.0614320055 399 Best 399 399;531;2175;8960 15.11389375 0.4996 -2.40478958333 17.5186833333 1.05355685239 1.03776681569 281 Best 281 281;2172;4005;10183 0.0 0.0 ENST00000548054.2 NC protein-coding gene protein-coding gene ENSG00000257987 185 496190 chr12:70448073-70448201- NoOverlap chr12 70448073 70448201 - 5.34485812797 43 0.572185287109 -5.89370711252 11.2385652405 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70448072;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70448073-70448201-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70448073-70448201&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.481739594439 1.06106784349 0.944800369635 70841853 70841981 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70841852;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70448073-70448201-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70841853-70841981&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EQDAVQLISTGICDRLPRGMFGLIIGRSSNTLKGIQILPGVIDSDYLGEIKLMAQVSGVHTISK Same 498190 chr12:70448073-70448201- 349 349 -164 0 155 70445357 70448659 Best 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.372093023256 0.234119782214 1.2290627907 0.1658 -5.16068837209 6.38975116279 0.0777289720636 0.971474503022 18583 Best 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 7.43723255814 0.2074 -10.7912744186 18.2285069767 0.65992073199 1.07204760783 2961 Best 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 186 500529 chr13:113406717-113406821- NoOverlap chr13 113406717 113406821 - 10.3868772507 35 0.756336962801 0.0397686055728 10.3471086451 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;113406716;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113406717-113406821-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A113406717-113406821&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05424888601 1.06104835612 1.01588686601 114061032 114061136 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;114061031;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113406717-113406821-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A114061032-114061136&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPEHIPPLNAPSVQAARRTQPATEPPRITVQIPVVHEMPAPPTR None NA NA 0 100 113403390 113410417 120 120;186;577;628;905;2155;43193 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:113403390-113410417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.590476190476 0.585284280936 20.43682 0.8118 6.77764571429 13.6591742857 1.02073611039 1.04549123197 568 325 325;568;804;826;1027;2642;38380 16.7705342857 0.5979 -1.18789428571 17.9584285714 1.03079144265 1.03122742169 615 110 110;511;615;1448;1864;2789;42035 0.0 0.0 coding exon(s) ADPRHL1 alternative final coding exon 187 500681 chr14:21941431-21941526+ NoOverlap chr14 21941431 21941526 + 12.4352564272 32 0.913378347448 -6.16656249762 18.6018189248 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21941430;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21941431-21941526%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21941431-21941526&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05249103493 1.06087181374 1.05901380998 22409622 22409717 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22409621;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21941431-21941526%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22409622-22409717&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDSVTQMEGPVTLSEEAFLTINCTYTATGYPSLFWYVQYPGEGLQLLLKATK None NA NA 0 156 21941431 21941646 Best 187 187;3274 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21941431-21941646&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.489583333333 0.188235294118 16.2511625 0.9065 -8.471696875 24.722859375 1.0429282259 1.01141256523 333 Best 333 333;2377 23.01380625 0.7099 -23.2500625 46.26386875 1.03198407023 0.811540532756 595 Best 595 595;1075 0.0 0.0 ENST00000390441.2 NC immunoglobulin segment overlaps an immunoglobulin region 188 569168 chr5:140570282-140570401- NoOverlap chr5 140570282 140570401 - 7.91654751897 40 0.958484016175 -0.785970014986 8.70251753395 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140570281;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140570282-140570401-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140570282-140570401&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03849632471 1.06055609752 1.04011988535 139949867 139949986 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139949866;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140570282-140570401-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139949867-139949986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WQQEQMVLRFQLEALQEERNTAEQDLAALYDLHVQATRAQTHHVLPISGDGG Same 570181 chr5:140570282-140570401- 258 258 -70 0 157 140570090 140575575 Best 188 188;325;1178;1912;10102;11098 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140570090-140575575&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.18648018648 10.6122275 0.9996 -1.6527075 12.264935 1.06074109437 1.04560142204 143 Best 143 143;737;966;1745;2012;3638 17.8442975 0.6083 -10.4219775 28.266275 1.08656114151 1.00229594868 94 Best 94 94;445;458;3312;3430;3706 0.0 0.117657978425 chr8:143922504-143925884- ENST00000507279.5 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 189 472479 chr1:54132971-54133300- NoOverlap chr1 54132971 54133300 - 12.7669290773 110 0.781140819964 6.00623725273 6.76069182456 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;54132970;330;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A54132971-54133300-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A54132971-54133300&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04783890711 1.06041181573 1.04012127873 54598644 54598973 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;54598643;330;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A54132971-54133300-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A54598644-54598973&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CDEYPVTPQRRNNTSVIVSVLYIDFSAAGREDIHEYEVRCEPRRKEASVHLLSGSHWLGPYAATAEHLQEAPPMDEAEALEGPVSMVAQDTSDIVFLGLCILAGILMVIAIVVLMLL Same 474356 chr1:54132971-54133300- 176 176 13 0 158 54132971 54136809 Best 189 189;340 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:54132971-54136809&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.590909090909 0.45186433537 22.1032436364 0.9941 9.50727090909 12.5959727273 1.08279306967 1.0488754245 41 Best 41 41;1026 44.8038918182 0.8782 13.1313081818 31.6725836364 1.04673016725 1.03570590279 377 Best 377 377;1504 0.0 0.0 ENST00000530059.1 NC coding exon(s) CDCP2 alternative final coding exons 190 552897 chr3:88086257-88086400+ NoOverlap chr3 88086257 88086400 + 10.3892666182 48 0.965671015488 3.00561252198 7.38365409624 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88086256;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88086257-88086400%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88086257-88086400&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04074334254 1.06008092214 1.04923673356 88135407 88135550 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88135406;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88086257-88086400%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88135407-88135550&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TFSIVMSGLLLCQVVEDYAGRWQVPLPQLQVLQTALCCFTTASASFPDECEHVQYVLSSLAV Same 553839 chr3:88086257-88086400+ 180 180 10 0 159 88086257 88086400 Best 190 190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88086257-88086400&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.451388888889 0.0 16.68440625 1.0 7.71147916667 8.97292708333 1.04701249988 1.03416414207 288 Best 288 288 40.9604833333 0.8906 12.9606395833 27.99984375 0.957261791265 1.0321429372 1737 Best 1737 1737 0.0 0.0 ENST00000473136.4,ENST00000462901.5 NC,AntiUTR5intron coding exon(s) ZNF654 5' extension 191 531581 chr19:46428117-46428416- NoOverlap chr19 46428117 46428416 - 8.30723398902 100 0.675255664912 0.701919947863 7.60531404115 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;46428116;300;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A46428117-46428416-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A46428117-46428416&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04570609385 1.05990009781 1.05114107999 46931374 46931673 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;46931373;300;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A46428117-46428416-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A46931374-46931673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GILDNFVDSRGSSGVHQRAYCCLKELGKMLFGVKDIALLEHGCKALEVDSYKSLMILGIPEDCNHEEFEEIIRLPLKPLGKFEVAGKAYLEEDKSKAAIIQLTEDINYAVVPR Same 533055 chr19:46428117-46428416- 213 213 -22 0 160 46427757 46428416 Best 191 191;373;824 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:46427757-46428416&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.556666666667 0.524628388225 15.983195 0.8836 -0.632323 16.615518 0.963863568985 1.01144160928 1009 499 499;1009;1233 15.983195 0.2762 -0.632323 16.615518 0.761899695305 1.01993875585 2596 2542 2542;2596;2694 0.0 0.0 protein-coding gene protein-coding gene ENSG00000277531 192 562939 chr4:151176550-151176687- NoOverlap chr4 151176550 151176687 - 8.4627391187 46 0.879169776522 1.83517393081 6.62756518789 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;151176549;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151176550-151176687-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A151176550-151176687&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06945440446 1.05983995048 1.0475533766 152097702 152097839 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;152097701;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151176550-151176687-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A152097702-152097839&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSFFTFQLPPSYEQVIKEINQVQVNTTNNNNAAATPRHTITSATQTDFSEEIDNDLPQSNASNLSSLILT None NA NA 0 161 151175562 151187459 Best 192 192;396;2038;2250;4391;9851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:151175562-151187459&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.347826086957 0.0 14.497673913 0.9997 6.22482173913 8.27285217391 1.06976059704 1.02399776348 84 Best 84 84;931;1769;1951;1972;2039 19.4627804348 0.6894 5.44155869565 14.0212217391 1.01357188699 0.971846283735 883 878 878;883;2268;2607;3428;4439 0.0 0.0 ENST00000304527.8,ENST00000604030.5 UTR5,NC coding exon(s) SH3D19 5' coding exons 193 531759 chr19:49017965-49018117- NoOverlap chr19 49017965 49018117 - 6.63740779021 51 0.822367631725 -2.193523466 8.83093125621 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49017964;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49017965-49018117-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49017965-49018117&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.970351550774 1.05977795523 1.02100154833 49521222 49521374 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49521221;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49017965-49018117-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49521222-49521374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GALSLAQESYSPLLHPLRRLDRFCPLEAPWGGPHWKPLRGIYSVPKAYSTENSSYGSLKPALV*AVR Same 533234 chr19:49017965-49018117- 108 108 85 1 33 49017965 49020515 34 34;193;1195;1825;2425;7512;24256 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49017965-49020515&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.699346405229 0.803571428571 9.85739019608 0.9717 -3.16587058824 13.0232607843 1.04556098365 1.01428714605 307 18 18;246;307;1538;2029;2679;3404 11.0073843137 0.4924 -3.23600980392 14.2433941176 0.901733268621 1.00352813147 2096 76 76;2096;2562;2564;4203;4229;5297 0.0 0.0 protein-coding gene protein-coding gene ENSG00000268655 194 571889 chr6:60499345-60499458+ NoOverlap chr6 60499345 60499458 + 13.6718370287 38 0.995554404436 -0.906597306854 14.5784343356 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;60499344;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60499345-60499458%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A60499345-60499458&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04324125488 1.05973767889 0.963170646214 57467092 57467205 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;57467091;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60499345-60499458%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A57467092-57467205&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GYS*NIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGK Same 572914 chr6:60499345-60499458+ 214 214 -20 3 162 60499345 60504670 Best 194 194;1167 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:60499345-60504670&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.429824561404 0.191919191919 20.4137710526 0.9521 1.13042368421 19.2833473684 1.0404764306 0.959051221982 360 Best 360 360;1302 47.7633736842 0.9811 8.80436578947 38.9590078947 0.951444039282 0.996156715103 1809 1053 1053;1809 0.988901888423 chr6:57601093-57601219+ 0.996661238582 chr6:57601093-57601219+ redundant PhyloCSF signals are accounted for elsewhere on the list 195 532005 chr19:51915465-51915632- NoOverlap chr19 51915465 51915632 - 3.33113573625 56 0.533628976883 -7.76020718393 11.0913429202 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51915464;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51915465-51915632-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51915465-51915632&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.20589117065 1.05972234615 0.949929911316 52418718 52418885 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52418717;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51915465-51915632-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52418718-52418885&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SKLTFHQRTHTGEKPYGCSKCQKSFSNKSQLMIHQRAHTEEKPYGCDECGKTFPLK Same 533482 chr19:51915465-51915632- 382 382 -187 0 163 51914745 51917661 Best 195 195;409;1357;1730;14809 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51914745-51917661&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.428571428571 0.0 5.54453392857 0.5902 -11.1336625 16.6781964286 0.922394558791 0.920159637188 1224 301 301;1224;3007;3293;9331 28.6105821429 0.8665 -26.679775 55.2903571429 1.00895139884 1.01465947066 959 673 673;959;1476;1923;2031 0.224680333249 chr19:52033720-52035440- 0.432890737643 chr19:53454650-53456748+ ENST00000613007.4 AntiUTR5intron pseudogene zinc finger protein pseudogene (ENSG00000283285) 196 519740 chr17:1228806-1229189- NoOverlap chr17 1228806 1229189 - 8.05184996093 128 0.88834198806 0.668492142344 7.38335781859 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;1228805;384;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1228806-1229189-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A1228806-1229189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.999620935624 1.05933456079 1.04619468641 1132100 1132483 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;1132099;384;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1228806-1229189-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A1132100-1132483&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EDDAPLGDPQAAPGTDEGGDGGDHDFEMVDFNEKFILSHWLVAPCRFGTRERARSPRRWMHLIPGGRRPQRGTRDLEQREAEAKGRPGSPLAAEETPGREHLPPWRRRRFLRVPERDSPGHSSPERDSDGSRHSSDREDDFSAGGRPPQTPLDPAARPPPR Same 521147 chr17:1228806-1229189- 142 142 54 0 164 1228806 1229657 Best 196 196;470;1267 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:1228806-1229657&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.765625 0.960311211967 8.784340625 0.9349 -1.36029375 10.144634375 1.02425545806 1.05632419482 537 310 310;537;1365 7.01764609375 0.7252 -7.32959921875 14.3472453125 0.940464290576 1.01766537971 1879 1052 1052;1879;3592 0.0 0.149438013361 chr17:76139898-76140395- ENST00000574139.5,ENST00000571543.1 UTR5,NC redundant PhyloCSF signals are accounted for elsewhere on the list 197 510856 chr16:20727341-20727466+ NoOverlap chr16 20727341 20727466 + 11.7210237199 42 0.689466551861 -0.64549524479 12.3665189647 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20727340;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20727341-20727466%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20727341-20727466&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06893034394 1.05928248215 0.948284586637 20738663 20738788 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20738662;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20727341-20727466%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20738663-20738788&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPMQLCLSRYKFKRLRHCLTGGEALTPEVLEQWRAQTGLELHESYGQTEVVYLK Same 512494 chr16:20727341-20727466+ 215 215 -18 0 165 20711460 20732984 Best 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.579365079365 0.309328968903 21.0956690476 0.9698 2.40820714286 18.6874619048 1.01895925103 0.958360315684 580 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 42.8660333333 0.7745 1.99434285714 40.8716904762 1.00547697556 0.966423260216 1023 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.856158443414 chr12:7322418-7322541+ 0.842306385861 chr12:7322418-7322541+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 198 463504 chr1:15727484-15727621+ NoOverlap chr1 15727484 15727621 + 11.2033172668 46 0.844797502828 2.36905435116 8.8342629156 ENST00000375793.2,ENST00000375799.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;15727483;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A15727484-15727621%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A15727484-15727621&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04389169462 1.05885337552 1.03056413583 16053979 16054116 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;16053978;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A15727484-15727621%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A16053979-16054116&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VQALLHQVAATMTLQGLANRCMFLVALRLLAKKKREEEERDRRLGP Same 465370 chr1:15727484-15727621+ 132 132 66 0 166 15721341 15731942 Best 198 198;10804;69075 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:15721341-15731942&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.630434782609 0.293617021277 12.2888891304 0.9744 1.34340217391 10.9454869565 1.05902849164 1.05015538409 162 Best 162 162;21947;66058 24.4106543478 0.8751 -8.03179130435 32.4424456522 1.01483744912 0.958077135382 854 Best 854 854;47280;54613 0.0 0.0 ENST00000375793.2,ENST00000453804.1 CDS,AntiNCintron under investigation PLEKHM2 has a PhyloCSF signal that changes frame within coding exon 9. The signal in that frame ends after approximately 130bp, prior to a STOP codon, and resumes in the original frame later in the same exon. The event is supported by PhyloCSF in the chicken genome [ICGSC Gallus_gallus-4.0/galGal4 ~chr21:4,217,442-4,217,718). Under investigation as a potential programmed frameshift. 199 544391 chr20:64038299-64038433+ NoOverlap chr20 64038299 64038433 + 11.8322242618 45 0.734647982842 1.82363556491 10.0085886969 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;64038298;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A64038299-64038433%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A64038299-64038433&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05664870304 1.05878933551 1.00263366311 62669652 62669786 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;62669651;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A64038299-64038433%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A62669652-62669786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPPFPPQEHSILLSISSLGRTLRGAVAGGRRGALERAAWTVAVRTEAVMRRHCR Same 545785 chr20:64038299-64038433+ 185 185 14 0 167 64037999 64063428 Best 199 199;531;848;20952;33477;42298;59555;67021;69802 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:64037999-64063428&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 0.815217391304 21.6059644444 0.8973 4.24373111111 17.3622333333 1.02288360049 0.969000440829 549 275 275;549;789;44125;48283;51520;58987;63113;63376 16.8489111111 0.52 -4.75950888889 21.60842 1.10762432656 1.05233910509 37 Best 37 37;1640;2782;60631;64517;67968;69077;72284;73543 0.0 0.0 ENST00000358393.1,ENST00000431158.1,ENST00000217130.4 NC,NCintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000196421 200 539275 chr2:74218687-74218791- NoOverlap chr2 74218687 74218791 - 11.2633658 35 0.947406075271 2.85185429198 8.41151150806 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;74218686;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A74218687-74218791-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A74218687-74218791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06711616533 1.0586445465 1.055499683 74445814 74445918 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;74445813;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A74218687-74218791-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A74445814-74445918&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NYVILLSYFSFSITLHFKISCPASPAFSYSRNPVFMVPQVKIEMESDYDFTDMDK Same 540653 chr2:74218687-74218791- 165 165 35 0 168 74218630 74221468 Best 200 200;4879;6382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:74218630-74221468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.485714285714 0.164576802508 16.4398457143 1.0 5.05185428571 11.3879914286 1.06759369633 1.05562405017 99 Best 99 99;1339;1947 43.5604657143 0.9154 14.29406 29.2664057143 0.972038698683 1.04767411582 1551 1520 1520;1551;2702 0.0 0.0 ENST00000346834.8,ENST00000483195.5,ENST00000451608.2 UTR3,NC,NCintron coding exon(s) SLC4A5 exon skip leading to frameshift and alternative C terminus 201 462828 chr1:924432-924956+ NoOverlap chr1 924432 924956 + 8.0842091385 175 0.539458566306 3.85119943559 4.2330097029 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;924431;525;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A924432-924956%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A924432-924956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.09658778905 1.05863214784 0.962972414941 859812 860336 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;859811;525;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A924432-924956%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A859812-860336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAMPAVKKEFPGREDLALALATFHPTLAALPLPPLPGYLAPLPAAAALPPAASLPASAAGYEALLAPPLRPPRAYLSLHEAAPHLHLPRDPLALERFSATAAAAPDFQPLLDNGEPCIEVECGANRALLYVRKLCQGSKGPSIRHRGEWLTPNEFQFVSGRETAKDWKRSIRHKGAAAPPFAAGTR Same 464692 chr1:924432-924956+ 458 458 -257 0 169 923849 924956 Best 201 201;31639;35146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:923849-924956&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.750476190476 0.970989220038 11.6994617143 0.7667 4.64896228571 7.05049942857 1.04400449169 0.991821133575 322 Best 322 322;37252;64576 17.2275228571 0.7985 0.506410857143 16.721112 1.02093145433 1.00838931243 775 Best 775 775;23237;23360 0.0 0.0469946087942 chr7:149791817-149791969+ ENST00000420190.5 UTR5 coding exon(s) SAMD11 5' extension 202 493951 chr12:132510285-132510440+ NoOverlap chr12 132510285 132510440 + 9.38202690133 52 0.746658274205 -0.431019246005 9.81304614733 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132510284;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132510285-132510440%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132510285-132510440&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04748637558 1.05857135343 0.98285654797 133086871 133087026 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;133086870;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132510285-132510440%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A133086871-133087026&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPLMGPEQPCQPLRPLMGPNKPCKPQPLLPIPDRPSLLGQPGPPCRPLLGLLCQPRRSLLDLVPARQPRLSLLALGHPCRPLRSRWTRSCAPGMARQAPSVSPGA Same 495942 chr12:132510285-132510440+ 172 172 30 0 98 132509173 132510440 116 116;202;637;794;2162;3860;16489;25303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132509173-132510440&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.74358974359 0.614545454545 15.3536846154 0.8801 3.19464038462 12.1590442308 1.04971587136 1.02718894068 263 6 6;93;263;1110;1440;2944;5926;7480 10.1592538462 0.5401 -1.61044807692 11.7697019231 0.813712275107 0.949398316261 2435 2003 2003;2026;2435;2663;4003;7601;8523;55779 0.0 0.127419301173 chr7:75421509-75423203- ENST00000542061.2,ENST00000434748.2 NC,CDSintron coding exon(s) FBRSL1 alternative final coding exon 203 491093 chr12:40427969-40428100+ NoOverlap chr12 40427969 40428100 + 11.8422454474 44 0.931691601296 2.97175681557 8.87048863179 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40427968;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40427969-40428100%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40427969-40428100&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04235626036 1.05826565935 1.03579496139 40821771 40821902 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40821770;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40427969-40428100%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40821771-40821902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CVLGYLLDDIGEKGKCVLKAECPCESSGTVYQPGEVREGPCGSQWYVCAFCSHITDGK Same 493070 chr12:40427969-40428100+ 154 154 49 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.44696969697 0.178861788618 17.733975 0.982 4.44879318182 13.2851818182 1.01821631855 1.02673073399 587 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 20.0220431818 0.5203 1.38733863636 18.6347045455 1.11467794374 1.03553943087 26 Best 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 204 574602 chr6:34247041-34247148- NoOverlap chr6 34247041 34247148 - 12.6281804575 36 0.830843569594 2.76898887588 9.85919158161 ENST00000335352.7,ENST00000394990.8,ENST00000413013.6,ENST00000468145.1,ENST00000476320.5,ENST00000481533.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34247040;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34247041-34247148-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34247041-34247148&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06155139041 1.05792016163 1.03699732251 34214818 34214925 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34214817;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34247041-34247148-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34214818-34214925&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VDRLRHHLLPMYSYDPAEELHEAEQELLSDMGDPKVSTWGPGGE Same 575634 chr6:34247041-34247148- 171 171 33 0 170 34224086 34247507 Best 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 0.198347107438 33.0006 0.9807 13.4630361111 19.5375638889 1.0439016796 1.04631312988 323 Best 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 43.8836333333 0.5163 18.4116055556 25.4720277778 0.965501110933 1.04897009067 1627 Best 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0 ENST00000394990.8,ENST00000463083.1 CDS,NC protein-coding gene protein-coding gene ENSG00000186577 205 591955 chr9:41047568-41047696- NoOverlap chr9 41047568 41047696 - 14.1433627959 43 0.730541996909 5.89653338705 8.24682940884 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;41047567;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41047568-41047696-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A41047568-41047696&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04363441792 1.05790914692 1.05044494414 70999435 70999307 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;70999434;-127;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41047568-41047696-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A70999435-70999307&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TCIFGVQILGPAPDVVSDKIYQISKTIEEYAICPDLQIDLSRLGRQEFDLENK Different 592909 chr9:41047538-41047690- 276 276 -71 0 171 41039613 41053896 Best 205 205;261;1694;3615;17582;51960 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:41039613-41053896&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.403100775194 0.781818181818 21.4261488372 0.8972 13.030155814 8.39599302326 1.05013394479 1.01239783087 261 187 187;248;261;371;844;4863 57.4385837209 0.9583 28.3016511628 29.1369325581 0.974513721231 1.0458477389 1518 1512 1512;1518;1550;1553;1648;1663 0.942668643842 chr9:68384398-68384544+ 0.948934868931 chr9:68384398-68384544+ ENST00000613141.1,ENST00000617940.1 NC,AntiNCintron pseudogene PGM5P2 unprocessed pseudogene (ENSG00000277778) 206 579342 chr7:128868665-128868772+ NoOverlap chr7 128868665 128868772 + 12.7713222421 36 0.764400701915 3.68058607065 9.09073617144 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;128868664;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A128868665-128868772%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A128868665-128868772&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06039426979 1.05790600978 1.05041292462 128508719 128508826 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;128508718;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A128868665-128868772%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A128508719-128508826&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLFPGPPVKQELVSCKMCRIESFFRKNGAFALLDPRDLAL Same 580386 chr7:128868665-128868772+ 190 190 16 0 172 128866410 128869879 Best 206 206;588;599;60089;63616 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:128866410-128869879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.601851851852 0.521235521236 19.5792416667 1.0 4.15504444444 15.4241972222 1.03629390266 1.01582706878 402 Best 402 402;800;1076;26130;53327 23.8769722222 0.4874 4.10435 19.7726222222 1.11947562678 1.03611587813 19 Best 19 19;145;1707;46080;51704 0.0 0.0114523788181 chr12:96021085-96021137- ENST00000609480.2,ENST00000492679.5 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000272899 207 563860 chr5:35790029-35790163+ NoOverlap chr5 35790029 35790163 + 11.9805111534 45 0.955302933971 3.95683549096 8.02367566244 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;35790028;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35790029-35790163%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A35790029-35790163&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03387093753 1.05778742754 1.0480778683 35790131 35790265 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;35790130;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35790029-35790163%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A35790131-35790265&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FQNIRKLTWDFVNSIYLHKYPNILTLVDLVLTLPASSAEAEHGFSQMK Same 564848 chr5:35790029-35790163+ 167 167 40 0 24 35787955 35790367 24 24;33;42;72;207;789;797;872;1069;2173;48626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:35787955-35790367&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.414814814815 0.348387096774 16.1636488889 0.9922 3.82703333333 12.3366155556 1.03296146651 1.03623748511 448 20 20;37;72;448;957;1150;1273;1329;1548;1888;12605 25.2281066667 0.5908 3.49432 21.7337866667 1.09081419597 1.04461661833 77 Best 77 77;86;112;376;544;1371;1761;1786;2084;2608;14924 0.0 0.0 ENST00000506526.5,ENST00000356031.7,ENST00000510433.1 NC,CDSintron,AntiNCintron coding exon(s) SPEF2 5 consecutive coding exons including an alternative termination codon 208 491090 chr12:40426419-40426505+ NoOverlap chr12 40426419 40426505 + 10.374286405 29 0.900495918212 -3.88164488612 14.2559312911 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40426418;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40426419-40426505%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40426419-40426505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02696151913 1.05769653386 0.952203596735 40820221 40820307 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40820220;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40426419-40426505%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40820221-40820307&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IIGTYFEKCGKVAALSNDYKMICIDEYCQTR Same 493067 chr12:40426419-40426505+ 192 192 16 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.367816091954 0.0 18.1502931034 0.9701 -5.01935517241 23.1696482759 1.05195761457 0.968888731537 229 Best 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 20.2439689655 0.4636 -8.18853793103 28.4325068966 1.03735373075 1.03109071451 518 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 209 477995 chr10:84452243-84452275+ NoOverlap chr10 84452243 84452275 + 7.35429993543 11 0.967086289769 -13.0239002694 20.3782002049 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;84452242;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A84452243-84452275%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A84452243-84452275&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.172104403024 1.05765301075 1.00550503876 86211999 86212031 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;86211998;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A84452243-84452275%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A86211999-86212031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFQVSMSIAAALELTGRSQFLQTHGR Same 479889 chr10:84452243-84452275+ 572 572 -363 0 173 84452243 84452275 Best 209 209 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:84452243-84452275&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.545454545455 0.0 3.98312727273 1.0 -18.7504 22.7335272727 0.392854122844 0.940356164093 4093 Best 4093 4093 2.83984545455 0.3519 -23.653 26.4928454545 0.256442289107 1.07622295674 5126 Best 5126 5126 0.0 0.0 ENST00000466105.5,ENST00000224756.12,ENST00000493409.5 NC,CDSintron,NCintron coding exon(s) CCSER2 first coding exon 210 479221 chr10:122568666-122568800+ NoOverlap chr10 122568666 122568800 + 6.25251098474 45 0.843910039589 -2.60974000891 8.86225099365 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122568665;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122568666-122568800%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122568666-122568800&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.937950180125 1.05733301882 1.03042155441 124328182 124328316 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124328181;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122568666-122568800%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124328182-124328316&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WGTMCDDSWDAQDADVVCRQLGCGYSMSALGGAHFGQGLGNIPLGDLHCLGR Same 481126 chr10:122568666-122568800+ 131 131 79 0 174 122568594 122568902 Best 210 210;843;1134 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122568594-122568902&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.255681818182 15.0799 0.9007 0.100028888889 14.9798711111 1.0537426941 0.984082279738 213 Best 213 213;1045;1571 47.5511844444 0.9576 0.140142222222 47.4110422222 0.97305486015 0.949894078302 1537 1064 1064;1423;1537 0.187121482109 chr10:122576399-122576722+ 0.301377786008 chr10:122576399-122576722+ ENST00000330163.8 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 211 691151 chr3:14818955-14819071+ Extension chr3 14818955 14819071 + 7.06132309253 39 0.85859894791 -1.63551794566 8.69684103819 chr3:14818955-14819209+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;14818954;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A14818955-14819071%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A14818955-14819071&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.994776657495 1.05724298105 1.04262256061 14860462 14860578 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;14860461;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A14818955-14819071%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A14860462-14860578&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VNCTFSPFLYFCHLDSPKPPVAPKPKTTSPLTPVTAPKFPSSARPESLHSPNSMFR Same 691780 chr3:14818955-14819071+ 149 149 62 0 175 14810490 14819071 Best 211 211;30409;44113;45247 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:14810490-14819071&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.57264957265 0.641447368421 13.4699410256 0.914 4.20712564103 9.26281538462 1.03350122579 1.04185549827 440 Best 440 440;41521;52016;56426 19.2751897436 0.794 0.751397435897 18.5237923077 1.01303013149 1.03446912143 893 Best 893 893;26665;62854;71416 0.0 0.0 ENST00000285046.9,ENST00000543601.5 Extension5p,UTR5 coding exon(s) FGD5 alternative 5' CDS 212 572942 chr6:138378073-138378186+ NoOverlap chr6 138378073 138378186 + 12.9873288376 38 0.876482233278 -3.1590419945 16.1463708321 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;138378072;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A138378073-138378186%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A138378073-138378186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05484937551 1.05718035683 0.985173392602 138699210 138699323 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;138699209;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A138378073-138378186%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A138699210-138699323&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VEGWPGHQLDENMRGLLGSSWKKFGHAGRGTYEWLTSEPGLPLLETQLQVCTYDLSLFFPK Same 573969 chr6:138378073-138378186+ 152 152 60 0 176 138378073 138382799 Best 212 212;795;7360 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:138378073-138382799&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.631578947368 0.361904761905 20.8801 0.9604 -2.73082894737 23.6109289474 1.06484587248 0.975911894943 110 Best 110 110;1225;2507 29.5962894737 0.5922 -1.71230263158 31.3085921053 1.03188696303 1.01038867527 598 Best 598 598;2101;2478 0.0 0.0 ENST00000573100.1 NC protein-coding gene protein-coding gene ENSG00000262543 213 491104 chr12:40441073-40441207+ NoOverlap chr12 40441073 40441207 + 12.8774111138 45 0.852529691513 5.33515326497 7.54225784888 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40441072;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40441073-40441207%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40441073-40441207&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02038514283 1.05704048857 1.05075023747 40834875 40835009 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40834874;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40441073-40441207%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40834875-40835009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ENLPCKRGCFCPEGMVRNSKGICVFPNDCPCSFGGREYDEGSVTSVGCNEWCLITDSYFISSGY Same 493081 chr12:40441073-40441207+ 148 148 65 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.42962962963 0.521235521236 17.0009177778 0.9471 5.27871111111 11.7222066667 1.03956421824 1.04368620567 369 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 39.124 0.891 0.0577155555556 39.0662844444 0.976148496473 0.965876383361 1498 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.270242871484 chr11:1176514-1176665+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 214 591941 chr9:38703856-38703999- NoOverlap chr9 38703856 38703999 - 12.6515291523 48 0.704435924824 4.28425840391 8.36727074834 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;38703855;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A38703856-38703999-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A38703856-38703999&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04451545245 1.05700311919 1.03861425296 38703853 38703996 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;38703852;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A38703856-38703999-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A38703853-38703996&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGICFTCIFQGMNNQYIRREVFCCGTCHELKSFWEKEISKQTFYRELEEDRQERSALKK Same 592896 chr9:38703856-38703999- 178 178 36 0 177 38694791 38703999 Best 214 214;508 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:38694791-38703999&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.808080808081 17.515875 0.9443 5.27001458333 12.2458604167 1.02117277225 1.03350110866 564 Best 564 564;1119 21.787025 0.4787 4.71618333333 17.0708416667 1.12357508506 1.01712443965 13 Best 13 13;2107 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283329 215 503240 chr14:20435053-20435169- NoOverlap chr14 20435053 20435169 - 12.0419538464 39 0.875190199795 -3.10182560942 15.1437794559 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;20435052;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20435053-20435169-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A20435053-20435169&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06337076391 1.05678160586 0.958091690186 20903212 20903328 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;20903211;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20435053-20435169-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A20903212-20903328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPSQAEELRENLRGIELLYREGVGCDLKLEAGGCQLSGEGLWGIK Same 505111 chr14:20435053-20435169- 174 174 41 0 178 20430676 20435763 Best 215 215;783;1136;1201;3984;5029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:20430676-20435763&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.668571428571 20.0552282051 0.9888 -4.9227974359 24.978025641 1.07195032984 1.01262913709 70 Best 70 70;912;1148;1271;2133;9110 25.737125641 0.5695 -7.52952307692 33.2666487179 1.04440548219 0.966836406937 412 Best 412 412;1247;1258;1543;1777;8205 0.0 0.0589678921161 chr12:53050186-53050260+ ENST00000344581.4 UTR5intron coding exon(s) KLHL33 alternative first exon 216 494061 chr12:2726523-2726633- NoOverlap chr12 2726523 2726633 - 7.1401513239 37 0.604198705458 -7.16548923705 14.305640561 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2726522;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2726523-2726633-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2726523-2726633&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.71070123511 1.05676070558 0.906848305797 2835689 2835799 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2835688;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2726523-2726633-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2835689-2835799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPPEKMILLFHLLCFLLQVGTQHVFLLLLLFQCLPVVSK Same 496055 chr12:2726523-2726633- 218 218 -2 0 179 2726421 2727050 Best 216 216;432;1226;2632;8002 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2726421-2727050&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.513513513514 0.0 4.14910540541 0.4857 -9.22957837838 13.3786837838 0.473764654827 1.06310557508 3324 1901 1901;3324;5423;5720;8206 12.3581945946 0.425 -12.6392945946 24.9974891892 1.04921169249 1.05050229953 333 Best 333 333;1730;1907;2558;2603 0.0 0.0 pseudogene gap junction beta family pseudogene (ENSG00000283587) 217 584202 chr8:54755618-54755773+ NoOverlap chr8 54755618 54755773 + 7.56830383035 52 0.882360277245 -1.09818073613 8.66648456648 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;54755617;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54755618-54755773%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A54755618-54755773&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03075053772 1.05656422746 1.02214611093 55668178 55668333 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;55668177;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54755618-54755773%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A55668178-55668333&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VMYFLLFSLPVALPVVRYQVDVYTGQLKHAETESEVFLCLFGERGDSGLRQLYKSNMQVKFQRGQVSLYK Same 585133 chr8:54755618-54755773+ 134 134 83 0 151 54755618 54769789 181 181;217;1058 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:54755618-54769789&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.49358974359 0.221276595745 14.3499307692 0.8919 0.551913461538 13.7980173077 1.04317980854 0.995176038397 330 Best 330 330;351;2145 23.2847826923 0.6763 -1.06526538462 24.3500480769 1.02345549439 1.036696058 733 593 593;733;2531 0.0 0.0 ENST00000521465.1 NCintron coding exon(s) RP1 massive extension 3'; 28 exons vs existing 3 exon model. However, the 3 exon CDS is actually longer. 218 572525 chr6:109286355-109286489+ NoOverlap chr6 109286355 109286489 + 9.86624225775 45 0.995171367293 0.236879961358 9.6293622964 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109286354;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109286355-109286489%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109286355-109286489&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04993231397 1.05649568307 1.00553995691 109607558 109607692 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109607557;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109286355-109286489%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109607558-109607692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MSHYALRGQIMAYCNSLRDLLEDFPTIRDTFFMVGQPQEKKGLRDSK Same 573552 chr6:109286355-109286489+ 303 303 -85 0 180 109284468 109286489 Best 218 218;344;3815 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109284468-109286489&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.474074074074 0.133004926108 15.2709977778 0.9999 -0.250353333333 15.5213511111 1.02390050396 0.973599279406 539 140 140;539;1469 22.77098 0.6575 -3.04390666667 25.8148866667 1.05406007783 1.03147161734 275 71 71;275;2829 0.0 0.0 ENST00000615766.4 NC redundant PhyloCSF signals are accounted for elsewhere on the list 219 485330 chr11:69157865-69157993+ NoOverlap chr11 69157865 69157993 + 11.7035070583 43 0.69686781961 -0.713009270125 12.4165163284 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;69157864;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A69157865-69157993%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A69157865-69157993&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06837967473 1.05625090951 0.944565153426 68925333 68925461 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;68925332;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A69157865-69157993%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A68925333-68925461&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCCCPLGLTSGMTSWPGGSFGPDPLLALLVVILLARLILWSCLGTYIDYRLAQRRPQKPK Same 487286 chr11:69157865-69157993+ 225 225 -6 0 181 69157426 69157993 Best 219 219;25275 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:69157426-69157993&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.658914728682 0.438775510204 19.0687534884 0.8211 -1.72144418605 20.7901976744 1.05948031908 0.949362625104 156 Best 156 156;58540 23.9804511628 0.5136 -6.82161860465 30.8020697674 1.06697389151 0.982705882633 182 Best 182 182;37704 0.0 0.0 ENST00000565145.1,ENST00000562772.1 NCintron,AntiNCintron protein-coding gene protein-coding gene ENSG00000284713 220 534732 chr2:110343526-110343678+ NoOverlap chr2 110343526 110343678 + 8.87939029581 51 0.689045069466 1.79907065075 7.08031964507 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110343525;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110343526-110343678%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110343526-110343678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03484962863 1.05565716334 1.04959353355 111101103 111101255 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111101102;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110343526-110343678%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111101103-111101255&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NQQAGLPSSELCFSGTKYATQFPCPRSYYDPDPLTQSLDSCLPCPPGHCCG*ENLTRASGPCAAGESPALP Same 536084 chr2:110343526-110343678+ 224 224 -4 13 182 110330068 110348951 Best 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.679738562092 0.405681818182 14.0136431373 0.7772 3.9963745098 10.0172686275 1.08320208646 1.04609581647 38 Best 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 40.6657117647 0.8665 14.1513627451 26.5143490196 0.952557105219 1.03216430313 1798 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 221 498818 chr13:98396019-98396120+ NoOverlap chr13 98396019 98396120 + 18.0711352738 34 0.820616284967 3.05260579376 15.01852948 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;98396018;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98396019-98396120%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A98396019-98396120&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05096029174 1.05507713292 1.03220980825 99048273 99048374 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;99048272;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98396019-98396120%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A99048273-99048374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WSPTSPRPYMRNLPGRCNKSETDPLILSQVAFTPEAMDGLGGR Same 500835 chr13:98396019-98396120+ 197 197 24 0 183 98395479 98396402 Best 221 221;647;961;993;1497;3791;4580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:98395479-98396402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.529411764706 0.434659090909 29.6966117647 0.9939 1.5622 28.1344117647 1.02561851151 1.00858518817 518 101 101;518;673;881;952;1128;1340 40.5972058824 0.8572 -3.50472058824 44.1019264706 1.01479249212 0.958919012678 855 Best 855 855;856;865;1168;1169;1303;3287 0.0 0.0999103355101 chr2:241441304-241442533+ ENST00000319562.10 CDSintron coding exon(s) FARP1 alternative final exon 222 479229 chr10:122734345-122734656+ NoOverlap chr10 122734345 122734656 + 10.3264846143 104 0.754315955655 3.54693846562 6.77954614865 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122734344;312;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122734345-122734656%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122734345-122734656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05381057655 1.0549007451 1.04749157979 124493861 124494172 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124493860;312;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122734345-122734656%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124493861-124494172&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DWPQLQLVNGSGRCSGHVEVFHHGQWGRVCDDQRDMNEADVVCRQLHCGCALAAPAEAQFGEGRGEFLLDDVDCTGKESFLGQCPHAGWGLHNCGPREDASIICAGNGHLSLHNAAHYISTHPTGSASTYVIDHLPLG Same 481134 chr10:122734345-122734656+ 217 217 5 0 184 122729428 122734656 Best 222 222;73365 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122729428-122734656&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.570512820513 0.408805031447 22.1632836538 0.9484 4.09609711538 18.0671865385 1.08249561216 1.03880327133 44 Best 44 44;29957 56.4369432692 0.9643 -5.24201057692 61.6789538462 0.941445720485 1.01855482862 1872 Best 1872 1872;3860 0.0587865992953 chr10:122595303-122595626+ 0.210734329672 chr12:7374442-7374756- redundant PhyloCSF signals are accounted for elsewhere on the list 223 573578 chr6:4084643-4084744- NoOverlap chr6 4084643 4084744 - 12.1744382007 34 0.882149637149 2.45180288308 9.72263531759 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;4084642;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A4084643-4084744-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A4084643-4084744&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06394405298 1.05488647356 1.04243872592 4084877 4084978 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;4084876;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A4084643-4084744-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A4084877-4084978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISWLPEGKVFSNVHREKISSKFFKESILKKVFCSQQMR Same 574607 chr6:4084643-4084744- 177 177 46 0 185 4084643 4084744 Best 223 223 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:4084643-4084744&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.382352941176 0.0 13.8525705882 0.9228 -1.55148529412 15.4040558824 1.0478074534 1.00045243351 283 Best 283 283 13.5567970588 0.3278 -3.68739705882 17.2441941176 0.849923652827 1.03031934005 2318 Best 2318 2318 0.0 0.0 ENST00000380188.2,ENST00000469157.5,ENST00000380175.8,ENST00000427996.5 NC,NCintron,AntiUTR5intron,AntiNCintron coding exon(s) FAM217A 5' exon 224 618521 chr11:57018887-57018997+ Extension chr11 57018887 57018997 + 7.62828382648 37 0.632742561742 -3.34818109588 10.9764649224 chr11:57018878-57018997+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57018886;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57018887-57018997%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57018887-57018997&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.809497449878 1.05479141144 0.973494398716 56786362 56786472 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;56786361;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57018887-57018997%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A56786362-56786472&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PQLPFSMGHSLTCTYQSHSNNSQENMKVASIFYGTVIPMLNPLIYSLRNKEVKEALK Same 619223 chr11:57018887-57018997+ 315 315 -91 0 186 57018887 57018997 Best 224 224 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57018887-57018997&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.324324324324 0.0 17.0981945946 0.9333 -6.26791081081 23.3661054054 1.0721412769 0.986783885469 68 Best 68 68 43.7492918919 0.8712 -14.4977594595 58.2470513514 1.00740660283 1.00085478454 989 Best 989 989 0.116591210444 chr11:56988914-56989843+ 0.256946820341 chr9:122723990-122724925+ pseudogene extension OR5AK1P pseudogene extension (ENSG00000255083) 225 537376 chr2:240572420-240572566+ NoOverlap chr2 240572420 240572566 + 13.7555142976 49 0.661169993289 7.79818979027 5.95732450729 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;240572419;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240572420-240572566%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A240572420-240572566&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04350807484 1.05467386858 1.02534701615 241511837 241511983 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;241511836;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240572420-240572566%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A241511837-241511983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGHCPLPEPPAFSQAAAQWLGPSTLAGWPSADGPSCPQIWWLDPELTYGCAKPFVFTQGHSVCNRSFFPCFDTPAVKCTYSAVVKVR Same 538747 chr2:240572420-240572566+ 187 187 38 0 187 240560378 240572566 Best 225 225;4611;43454;53343;54932;58666;60196 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:240560378-240572566&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.668181818182 22.9138081633 0.9344 11.925155102 10.9886530612 1.01223550119 1.04108424438 635 Best 635 635;2542;29313;56709;59851;60661;63450 51.5685816327 0.9148 22.0451897959 29.5233918367 0.96219807306 1.02744712952 1672 Best 1672 1672;2162;18782;46446;66739;70450;73682 0.0 0.259508041174 chr1:201988904-201989044+ ENST00000270357.8,ENST00000486058.5,ENST00000451363.5 UTR5,NC,UTR5intron coding exon(s) RNPEPL1 extended 5' 226 511181 chr16:30063729-30063839+ NoOverlap chr16 30063729 30063839 + 15.5473351446 37 0.821698329137 7.89257567154 7.65475947309 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;30063728;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A30063729-30063839%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A30063729-30063839&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04852062804 1.05418148914 1.04686872983 30075050 30075160 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;30075049;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A30063729-30063839%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A30075050-30075160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPIPPPSTLSLLPQDWAPRCPRCCPLCDCACTCQLPDCQSLNCLCFEIKLR Same 512823 chr16:30063729-30063839+ 191 191 35 0 188 30054796 30063839 Best 226 226;1855;4003 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:30054796-30063839&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.648648648649 0.63950617284 23.9898162162 0.9792 11.7164459459 12.2733702703 1.03234702841 1.05386147294 456 253 253;355;456 30.8785810811 0.5267 12.032627027 18.8459540541 1.10592745873 1.01819553857 41 Best 41 41;2196;2589 0.0 0.0 ENST00000338110.9,ENST00000562240.1 UTR5,NC protein-coding gene protein-coding gene ENSG00000285043 227 479245 chr10:122788357-122788515+ NoOverlap chr10 122788357 122788515 + 8.82238107273 53 0.877632721101 1.24716610447 7.57521496826 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122788356;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122788357-122788515%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122788357-122788515&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04241477449 1.05382702423 1.04463722208 124547873 124548031 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124547872;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122788357-122788515%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124547873-124548031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AIAAPGKAHFGPGSGDILLDNIQCSGSENHLGQWPSSGWSDHNRGHHEDANVVCSGGLSFHDR Same 481150 chr10:122788357-122788515+ 143 143 84 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.566037735849 0.157738095238 16.2855320755 0.9591 4.02947169811 12.2560603774 1.00393510246 1.02492720378 704 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 43.4174679245 0.9794 -7.48960188679 50.9070698113 0.980090141111 0.973553857918 1418 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.166243158327 chr10:122630961-122631281+ 0.202006019329 chr12:7432416-7432736- ENST00000439464.6 NCintron pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 228 521627 chr17:43228447-43228554- NoOverlap chr17 43228447 43228554 - 10.4210638263 36 0.700364097217 -2.23744155467 12.658505381 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;43228446;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A43228447-43228554-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A43228447-43228554&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03735007878 1.05368231683 0.949435333444 41380498 41380605 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;41380497;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A43228447-43228554-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A41380498-41380605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGSSGLCLSPPPPGASYHPTIMGSAYHWEARRRQMALDRRRWLMAQQQQELQQKEQVHGIGWVLQGPLWSR Same 523048 chr17:43228447-43228554- 250 250 -22 0 189 43228447 43228554 Best 228 228 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:43228447-43228554&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.395604395604 10.6515944444 0.8029 -4.87004722222 15.5216416667 1.03117374206 0.982418866875 467 Best 467 467 11.9123277778 0.2736 -5.54205833333 17.4543861111 0.780542601469 1.04144092994 2547 Best 2547 2547 0.0 0.0 ENST00000433702.6 NCintron protein-coding gene protein-coding gene ENSG00000236383 229 521628 chr17:43303149-43303256- NoOverlap chr17 43303149 43303256 - 10.4210638263 36 0.700364097217 -2.23744155467 12.658505381 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;43303148;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A43303149-43303256-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A43303149-43303256&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03735007878 1.05368231683 0.949435333444 41380498 41380605 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;41380497;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A43303149-43303256-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A41380498-41380605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGSSGLCLSPPPPGASYHPTIMGSAYHWEARRRQMALDRRRWLMAQQQQELQQKEQVHGIGWVLQGPLWSR Same 523053 chr17:43303149-43303256- 251 251 -22 0 190 43303149 43303256 Best 229 229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:43303149-43303256&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.395604395604 5.94962777778 0.523 -2.67583611111 8.62546388889 0.428324979141 1.05165967167 3715 Best 3715 3715 5.94962777778 0.1635 -2.67583611111 8.62546388889 0.220641921247 0.829879016771 5736 Best 5736 5736 0.0 0.0 ENST00000600764.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 230 686733 chr21:36938884-36938994- Extension chr21 36938884 36938994 - 17.4273187599 37 0.839737792267 6.88277830546 10.5445404544 chr21:36938830-36938994- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;36938883;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A36938884-36938994-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A36938884-36938994&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05467555841 1.0536345073 1.04645943772 38311184 38311294 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;38311183;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A36938884-36938994-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A38311184-38311294&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISTCLFPPPPSPAFSQIVKWSDCCLPLACRPGDPYRLIAEASVDNFSKLGVAFMEDR Same 687325 chr21:36938884-36938994- 208 208 22 0 191 36938884 36938994 Best 230 230 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:36938884-36938994&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.504504504505 0.29679144385 26.5235054054 0.919 13.5243162162 12.9991891892 1.04003019909 1.05328257625 365 Best 365 365 48.6092189189 0.911 19.8043162162 28.8049027027 0.964191613667 1.04870024221 1644 Best 1644 1644 0.0 0.0 ENST00000336648.8 Extension5p coding exon(s) HLCS alternative first coding exons 231 549337 chr22:50679312-50679431+ NoOverlap chr22 50679312 50679431 + 16.8027875304 40 0.816403448539 5.92445504814 10.8783324823 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50679311;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50679312-50679431%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50679312-50679431&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04636133737 1.05355413405 1.03156197233 51117740 51117859 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51117739;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50679312-50679431%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51117740-51117859&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EWLAGDPPGVQGAEVGSRPLCAGLGVLALSVGVGALASAQGPYSTLLFPQACRFGHVQHLEHLLFYGADMGAQNASGNTALHICALYNQVR None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.33264033264 24.817925 0.9798 10.9810025 13.8369225 1.02129486324 1.04490265295 562 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 64.81559 0.9908 19.8029225 45.0126675 0.968740388881 1.03136709469 1587 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.3426486906 chr19:50711371-50711487- ENST00000262795.5 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 232 483221 chr11:1077455-1077571+ NoOverlap chr11 1077455 1077571 + 10.3057333116 39 0.547868138575 0.298533378503 10.0071999331 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1077454;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1077455-1077571%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1077455-1077571&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.924874040124 1.05354023121 1.01265945683 1077599 1077715 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1077598;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1077455-1077571%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1077599-1077715&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSTPHYSPGLLIEKSDAYTKVYSRAGLTLMWNREDALMVLR Same 485151 chr11:1077455-1077571+ 365 365 -133 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.623931623932 0.629032258065 28.7825589744 0.9191 4.99551794872 23.7870410256 1.05175896573 0.986369376063 235 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 50.7552358974 0.8914 -3.00634615385 53.7615820513 1.00058177875 0.961467301383 1105 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.103017505091 chr11:1227031-1227145+ 0.304307843639 chr11:1227031-1227145+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 233 467273 chr1:152948552-152948878+ NoOverlap chr1 152948552 152948878 + 8.67078351817 109 0.704772924056 -0.298052316275 8.96883583445 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;152948551;327;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A152948552-152948878%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A152948552-152948878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04088857857 1.05330780194 1.03243064139 152921028 152921354 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;152921027;327;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A152948552-152948878%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A152921028-152921354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLSMAQVFLISVSFCFQLQVQPRMSQQKQKQCAPPQQCCPPPQQRCPPPQQCCPPPQQCCPPPQQCCPPPQQCCPPPQQCCPPPQQCCPPPQQYCPPPQQTKQPCQPPPKCQEPCAPKCPPPQQCQTSKQK Same 469140 chr1:152948552-152948878+ 295 295 -62 0 192 152948552 152948878 Best 233 233 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:152948552-152948878&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.688073394495 0.183776695392 15.089140367 0.8176 -3.29091743119 18.3800577982 0.92481604569 0.983602030233 1214 Best 1214 1214 8.07375963303 0.649 -17.5717357798 25.6454954128 0.981754119926 1.15008875859 1393 Best 1393 1393 0.0027205671425 chr1:152884423-152884773+ 0.116665630728 chr11:1182155-1192525+ ENST00000419578.1 AntiNCintron protein-coding gene protein-coding gene ENSG00000283227 234 589109 chr9:69145704-69145820+ NoOverlap chr9 69145704 69145820 + 16.1736077269 39 0.860709779272 8.21011798428 7.96348974262 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;69145703;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A69145704-69145820%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A69145704-69145820&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0455170702 1.05329168573 1.05149986971 71760620 71760736 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;71760619;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A69145704-69145820%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A71760620-71760736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MRYKKYIGILEAAVGITPLNKRELLPESRRHVNLWQQPG Same 590055 chr9:69145704-69145820+ 193 193 41 0 193 69145704 69151696 Best 234 234;2206 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:69145704-69151696&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.435897435897 0.361111111111 23.6848410256 0.9944 11.1895384615 12.4953025641 1.02079747077 1.05274456899 567 Best 567 567;1619 37.3648666667 0.6565 15.9035076923 21.4613589744 1.01350971887 1.03658358767 886 Best 886 886;2502 0.0 0.0 ENST00000453658.6 UTR5intron coding exon(s) TJP2 alternative first coding exon and cassette 235 463039 chr1:6455559-6455882+ NoOverlap chr1 6455559 6455882 + 9.61432405996 108 0.749109749102 1.24810562545 8.36621843451 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;6455558;324;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6455559-6455882%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A6455559-6455882&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05148858583 1.05310328242 1.04302527499 6515619 6515942 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;6515618;324;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6455559-6455882%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A6515619-6515942&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPASPGLAHGLYWPQHFLPPLDGGAPPHYDSLTLDLFMLGYFQLLEMGLSREERKFRHLLCYEMFDRLGSHPWERIRLFHRVVLEEVEAGRRGWSDGFEDLRHRFFGNGLEAEPAPEEQAK Same 464903 chr1:6455559-6455882+ 247 247 -12 0 194 6447414 6467425 Best 235 235;370;505;560;639;1215;12903;51895 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:6447414-6467425&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.688271604938 0.914368650218 19.3011296296 0.9303 4.86941388889 14.4317157407 1.03725462502 1.04120761082 395 Best 395 395;511;536;884;1170;1602;50220;68713 46.4808925926 0.9446 8.89391574074 37.5869768519 1.01501029992 1.03840535117 851 638 638;851;876;1267;1741;2000;23707;36104 0.0 0.279634692288 chr2:238130128-238131732+ ENST00000377828.5,ENST00000477679.1 CDSintron,NCintron coding exon(s) ESPN very large alternative final exon 236 599409 chr1:28593695-28593799+ Extension chr1 28593695 28593799 + 9.43986013276 35 0.858345268068 1.78143424477 7.65842588799 chr1:28593695-28594048+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;28593694;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A28593695-28593799%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A28593695-28593799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07286163572 1.05254469561 1.05435340777 28920207 28920311 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;28920206;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A28593695-28593799%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A28920207-28920311&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CITRSFYRNVVGVLLVFDVTNRKSFEHIQDWHQEVMATQGPDK Same 600124 chr1:28593695-28593799+ 162 162 74 0 195 28593695 28593799 Best 236 236 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:28593695-28593799&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.514285714286 0.144827586207 12.9513885714 0.9697 0.415197142857 12.5361914286 1.05509090268 1.04841137172 199 Best 199 199 52.6094885714 0.9268 1.00689714286 51.6025914286 0.986507579897 0.969937776034 1323 Best 1323 1323 0.0 0.227519157005 chrX:155260803-155261229- ENST00000373826.3,ENST00000465518.1,ENST00000471683.5 Extension5p,NC,AntiNCintron coding exon(s) RAB42 first coding exon 237 520079 chr17:6639636-6639995- NoOverlap chr17 6639636 6639995 - 11.3591732106 120 0.659796673533 6.18521668414 5.17395652644 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;6639635;360;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A6639636-6639995-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A6639636-6639995&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.994787048384 1.05224049916 0.988055797175 6542956 6543315 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;6542955;360;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A6639636-6639995-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A6542956-6543315&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QAAETADAAGANEALGAPGTPGSIEAARDPGAVWVNGAVGEPEVVGLAGAVWVTGSGEEETEDRSPRGCERKGRPGSLGHESILHLWLKVQAMRAASGCGEGSRVELHPVPAGEGPVERGVPGRASWVETSRGGLTGPWVKEQAR None NA NA 0 196 6637185 6640241 Best 237 237;7084;40012;65363 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:6637185-6640241&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.652777777778 0.525803310613 24.45684 0.9598 11.5399375 12.9169025 1.05957255683 1.05051848431 155 Best 155 155;1869;2583;20653 17.013525 0.5674 3.96427083333 13.0492541667 1.00819200422 0.929379892593 975 Best 975 975;4420;5195;62339 0.0 0.0578144181818 chr5:139392034-139395081- ENST00000361413.7,ENST00000570455.1 UTR5intron,NCintron not annotated putative regulatory region 238 469798 chr1:2800480-2800821- NoOverlap chr1 2800480 2800821 - 11.5036780547 114 0.747444314609 2.35777547224 9.14590258243 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;2800479;342;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A2800480-2800821-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A2800480-2800821&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02817049194 1.05217760792 1.03697672809 2717045 2717386 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;2717044;342;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A2800480-2800821-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A2717045-2717386&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HGPVGVPDMMSAQELVACLCREGEQHLALGELPLATAFYLAAFSCHAPSALQSVRTALAQARGAAVVATLESWCRGDSQIPAIHWDGMAVVSLTGSLASAFLGALCPDHPAAILHLLAGLLARGR Same 471680 chr1:2800480-2800821- 249 249 -11 0 48 2789592 2800821 54 54;238;634;805 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:2789592-2800821&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.730994152047 0.461538461538 22.2117701754 0.923 6.57494824561 15.6368219298 1.06045189168 1.04350192097 149 Best 149 149;159;806;852 31.2000052632 0.6445 3.39958508772 27.8004201754 1.00873229214 1.02964507159 964 240 240;868;964;1943 0.0 0.0283437035275 chr8:144527342-144527787- ENST00000401094.9 NC coding exon(s) TTC34 5' extension 239 483244 chr11:1089509-1089670+ NoOverlap chr11 1089509 1089670 + 13.7813296122 54 0.612861942587 5.25322595791 8.52810365431 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1089508;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1089509-1089670%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1089509-1089670&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04027867508 1.0520290882 1.02398661362 1087445 1087606 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1087444;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1089509-1089670%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1087445-1087606&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQDRPGCSPQVDPKPFYEACVHDSCSCDTGGDCECFCSAVASYAQECTKEGACVFWRTPDLCRK Same 485174 chr11:1089509-1089670+ 219 219 20 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641975308642 0.602678571429 27.0459259259 0.8682 13.579387037 13.4665388889 1.03160218844 1.018643342 461 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 61.5376314815 0.9545 23.1569148148 38.3807166667 0.991882537269 0.999142300816 1242 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.122817645019 chr11:1023947-1024103- 0.339138030058 chr11:1179092-1179248+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 240 559537 chr4:93806712-93806870+ NoOverlap chr4 93806712 93806870 + 7.3109641201 53 0.890676017856 -3.39730187013 10.7082659902 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;93806711;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A93806712-93806870%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A93806712-93806870&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01810673656 1.05197771 0.94399474526 94727863 94728021 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;94727862;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A93806712-93806870%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A94727863-94728021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INLDVTLCFISPQASSLQNETTISERRNAWPLRPCLKLGSNTWRSQASSHSLHQSSQMGGPLDDP Same 560526 chr4:93806712-93806870+ 183 183 57 0 197 93806712 93806870 Best 240 240 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:93806712-93806870&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.48427672956 0.0 11.9084169811 0.9985 -4.30935283019 16.2177698113 1.02160494265 0.934477392281 560 Best 560 560 -4.4356490566 0.5278 -20.2449584906 15.809309434 0.509776257162 1.07369525287 3494 Best 3494 3494 0.0 0.0 coding exon(s) GRID2 alternative 3' coding exon 241 572517 chr6:109257655-109257777+ NoOverlap chr6 109257655 109257777 + 6.08838305677 41 0.83990234226 -3.02896578574 9.1173488425 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109257654;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109257655-109257777%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109257655-109257777&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.900829269712 1.05177559129 1.03013826135 109578858 109578980 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109578857;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109257655-109257777%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109578858-109578980&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALEHLFQEACHACRPTSASGLASLERHVLQLALDLWLTPATPEAWYSTQLQKDVSSF Same 573544 chr6:109257655-109257777+ 173 173 68 0 198 109254451 109270128 Best 241 241;379;398;784;1262;1279;1591;1821;4627;6101 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109254451-109270128&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.617886178862 0.174715909091 12.8867731707 0.9615 -3.58700487805 16.4737780488 1.06692913508 0.953242911759 103 Best 103 103;138;267;470;609;712;856;2049;2971;3012 12.1195878049 0.7645 -16.8917804878 29.0113682927 1.01699383881 0.982392617463 818 235 235;262;499;654;818;864;1043;1677;1862;2261 0.0 0.0 ENST00000453496.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 242 490925 chr12:25017177-25017290+ NoOverlap chr12 25017177 25017290 + 6.85602628871 38 0.77717089703 -2.39408956105 9.25011584976 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;25017176;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A25017177-25017290%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A25017177-25017290&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.91789211076 1.05148901123 1.03030811247 25170111 25170224 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;25170110;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A25017177-25017290%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A25170111-25170224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EVSDLIAYVADLHFNKRKLEEENNKFKLALETLEETNSQLSEDCTELRLQVK Same 492901 chr12:25017177-25017290+ 201 201 41 0 199 25017177 25017290 Best 242 242 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:25017177-25017290&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.368421052632 0.527777777778 7.87069736842 0.8517 -3.06507631579 10.9357736842 0.891497450072 1.07164259153 1316 Best 1316 1316 22.0501342105 0.6962 -5.05219473684 27.1023289474 1.06422187088 1.02880513342 200 Best 200 200 0.0 0.0 ENST00000556060.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 243 469938 chr1:6506030-6506158- NoOverlap chr1 6506030 6506158 - 12.6462674159 43 0.77934212324 2.6330651225 10.0132022934 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;6506029;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6506030-6506158-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A6506030-6506158&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0454135 1.05146470232 1.01285392695 6566090 6566218 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;6566089;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6506030-6506158-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A6566090-6566218&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPGGAASPGLSMFLYWRKRGTYELEALPGDLAELELGTVERFSWSSTLDIIEDLGGR Same 471820 chr1:6506030-6506158- 212 212 31 0 200 6497370 6506158 Best 243 243;55919 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:6497370-6506158&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.651162790698 0.664187643021 20.8144976744 0.9973 3.90314418605 16.9113534884 0.995875894615 0.977014416933 779 Best 779 779;58432 37.411644186 0.7127 6.60493953488 30.8067046512 0.954495259937 1.02382888052 1771 Best 1771 1771;71094 0.0 0.0 ENST00000377740.4 CDSintron coding exon(s) PLEKHG5 alternative first exon 244 485756 chr11:94517582-94517677+ NoOverlap chr11 94517582 94517677 + 10.283271933 32 0.838352121004 -0.1377093466 10.4209812796 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;94517581;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A94517582-94517677%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A94517582-94517677&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.055666448 1.05105753602 1.02294893228 94250748 94250843 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;94250747;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A94517582-94517677%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A94250748-94250843&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VIDFVNAFIGKKFLYCEPHKRIKEVLEEERHIKRDECHIKNPAAGNLSDK Same 487714 chr11:94517582-94517677+ 210 210 34 0 131 94512607 94528205 158 158;244;57951 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:94512607-94528205&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.322916666667 0.484848484848 11.3697875 0.9256 -0.280675 11.6504625 0.982247520318 1.05951106203 888 Best 888 888;996;10637 12.458809375 0.5267 -5.998275 18.457084375 0.941816897428 1.04705057908 1869 Best 1869 1869;1960;13464 0.0 0.0 ENST00000542198.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 245 592929 chr9:114098283-114098429- NoOverlap chr9 114098283 114098429 - 12.3264102814 49 0.775720716302 6.79597962997 5.53043065144 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;114098282;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114098283-114098429-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A114098283-114098429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01638850807 1.05100566737 1.01412812458 116860563 116860709 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;116860562;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114098283-114098429-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A116860563-116860709&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVSPPGGGPEVAFRFGAVLDAARTQEDVFRACGVRRLGELALRG*VKLRLR Same 593882 chr9:114098283-114098429- 200 200 45 5 201 114097703 114099171 Best 245 245;413;642;1048;5747 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:114097703-114099171&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.727891156463 1.14079822616 17.1827326531 0.8777 8.05395306122 9.12877959184 1.06071293782 1.03532979061 144 Best 144 144;336;489;1116;1913 18.9696489796 0.5806 3.01236938776 15.9572795918 1.06487923651 1.00865544994 195 115 115;195;206;3221;3941 0.0 0.0859290041502 chr17:28357671-28357881+ ENST00000468460.1,ENST00000374118.7 NC,UTR5intron coding exon(s) KIF12 coding exons added to make inferred transcript model 246 521540 chr17:42039741-42040328- NoOverlap chr17 42039741 42040328 - 8.03055303829 196 0.714399923393 1.99379025103 6.03676278726 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;42039740;588;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42039741-42040328-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A42039741-42040328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.060445317 1.05074312006 1.04125882087 40191759 40192346 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;40191758;588;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42039741-42040328-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A40191759-40192346&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CTYRGVELLGYSEAAVRGLEWLRGSFLDSMRKGLQDSYPGPSLDAVAAFAAIFDPRRYPQAPEELGTHGEGALRVLLRGFAPAVVRQRALGDFALFKRVVFGLGRLGPRALCTQLACAHSELHELFPDFAALAALALALPAGAGLLDKVGRSRELRWWGQSGAGEGRGGHMVKIAVDGPPLHEFDFGLAVEFLESGWGEGFLGSQLT Same 522960 chr17:42039741-42040328- 156 156 90 0 202 42039741 42043379 Best 246 246;490;677;1042;1254;1300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:42039741-42043379&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.710884353741 0.884783665532 11.3053994898 0.8543 1.72242397959 9.5829755102 1.05388154883 1.05700480275 211 Best 211 211;393;721;1090;1261;1575 25.2654469388 0.6317 2.50790561224 22.7575413265 1.04118209373 1.02758611668 463 256 256;463;585;758;813;1544 0.0 0.0 ENST00000436535.3 CDSintron protein-coding gene protein-coding gene ENSG00000267221 247 573290 chr6:158093885-158094013+ NoOverlap chr6 158093885 158094013 + 12.3296650801 43 0.906175822967 2.48588372975 9.84378135031 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;158093884;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A158093885-158094013%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A158093885-158094013&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04056188431 1.05057743523 1.01585122964 158514917 158515045 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;158514916;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A158093885-158094013%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A158514917-158515045&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EVPQLFLPLFLQIVFCSRSQASQPCLLLQRHEFVRTVAAQRLASVDTSGSSV*SQCSSNGPSVIPSWSSQHDAASPLESVR Same 574318 chr6:158093885-158094013+ 202 202 45 1 203 158093885 158094013 Best 247 247 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:158093885-158094013&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.449612403101 0.310096153846 13.3028813953 0.9614 2.21816976744 11.0847116279 1.06168933713 1.05097241141 134 Best 134 134 14.4510604651 0.3723 2.07103953488 12.3800209302 0.857252563221 0.943779035356 2289 Best 2289 2289 0.0 0.0 ENST00000355585.8 CDSintron coding exon(s) SYNJ2 alternative final coding exon 248 520745 chr17:28717298-28717618- NoOverlap chr17 28717298 28717618 - 10.2562588831 107 0.778724502638 6.02461030913 4.23164857401 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;28717297;321;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A28717298-28717618-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A28717298-28717618&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05485389617 1.05029387898 0.957078823167 27044316 27044636 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;27044315;321;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A28717298-28717618-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A27044316-27044636&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VIVGTIRPRVIVGSARARPPPDGTPRPQLAAEESPRPRVIFGTPRARVILGSPRPRVIVSSPWPAVVVASPRPRTPVGSPWPRVVVGTPRPRVIVGSPRARVADADPASAPSQGALQGR Same 522159 chr17:28717298-28717618- 227 227 21 0 204 28716900 28729058 Best 248 248;2079;2289;12048 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:28716900-28729058&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.719626168224 1.08625357197 13.0103915888 0.8734 7.0454728972 5.96491869159 1.02627054796 0.947986137002 513 Best 513 513;2080;5830;56808 8.70213738318 0.5688 2.60535140187 6.09678598131 0.677650959271 0.760879092907 2890 Best 2890 2890;6873;48672;65906 0.0 0.104004209885 chr4:174975526-174977988+ ENST00000395242.6,ENST00000483554.1,ENST00000430132.6,ENST00000412625.5 UTR5,NC,CDSintron,UTR5intron protein-coding gene protein-coding gene ENSG00000109113 249 486543 chr11:125951923-125952048+ NoOverlap chr11 125951923 125952048 + 3.19538088285 42 0.755959556326 -7.93267861151 11.1280594944 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125951922;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125951923-125952048%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125951923-125952048&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.29423175434 1.05028758803 0.967083960096 125821818 125821943 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125821817;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125951923-125952048%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125821818-125821943&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGTAKPFLLPQGHTEPSFLPGEPLGRPTCWSTATMGDQFIMLSCEWPGGEPPATLGWLDEQQQPLGGSSSSMAVHLLQAQEDLAGREFTCRGTHLLRTPDPHCHLQLGE Same 488505 chr11:125951923-125952048+ 159 159 90 0 205 125947712 125955911 Best 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.650793650794 0.380434782609 3.81008333333 0.9109 -12.9314047619 16.7414880952 0.976323382935 0.955117753099 924 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 15.7635595238 0.5046 -13.8521214286 29.6156809524 1.10045814292 0.971269943684 49 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0 ENST00000524962.2 NC protein-coding gene protein-coding gene ENSG00000283703 250 523252 chr17:76307843-76307992- NoOverlap chr17 76307843 76307992 - 10.2778080617 50 0.659371938659 -3.41727402866 13.6950820903 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;76307842;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A76307843-76307992-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A76307843-76307992&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06106068142 1.04999794006 0.92596996473 74303924 74304073 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;74303923;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A76307843-76307992-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A74303924-74304073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGAQLLTATMPPATTVSLRELADLSIGTPEVGAVNFTALHTLIVAMLKNLDLQNTRIDFQPSSPEPSR Same 524687 chr17:76307843-76307992- 271 271 -21 0 9 76307579 76307992 9 9;250 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:76307579-76307992&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.66 0.980819529207 13.347164 0.9233 -5.334164 18.681328 1.04694430917 0.919541472025 289 64 64;289 21.230836 0.5958 -7.352172 28.583008 1.04038391278 0.994020869552 475 Best 475 475;556 0.0 0.0 coding exon(s) QRICH2 large 5' extension to first exon 251 549347 chr22:50704737-50704865+ NoOverlap chr22 50704737 50704865 + 17.0447256232 43 0.784803433635 11.4611092858 5.58361633746 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50704736;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50704737-50704865%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50704737-50704865&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03832895627 1.04992263688 0.995578087959 51143165 51143293 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51143164;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50704737-50704865%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51143165-51143293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPPAAETPIEEFTPTPAFPALQYLESVDVEGVAWRAGLRTGDFLIEVR None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.682170542636 0.80625 31.1611069767 0.9823 21.9613813953 9.1997255814 1.04957493564 1.00670589395 264 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 71.8684348837 0.9927 47.6486627907 24.219772093 0.991867942037 1.01167075099 1243 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.26014837212 chr19:50688844-50688968- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 252 491114 chr12:40565645-40565788+ NoOverlap chr12 40565645 40565788 + 9.64542907973 48 0.931572823682 -1.11909581255 10.7645248923 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40565644;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40565645-40565788%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40565645-40565788&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05622364553 1.04969638261 0.958396840747 40959447 40959590 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40959446;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40565645-40565788%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40959447-40959590&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PGDIWTANCHRGTCTDAKTIDCKPEECPSPPTCKTGEKLVKFQSNDTCCEIGYCGVYFN Same 493091 chr12:40565645-40565788+ 252 252 0 0 19 40565645 40570604 19 19;175;252;1193;1558 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40565645-40570604&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.486111111111 0.353808353808 13.9709208333 0.9426 -0.426004166667 14.396925 1.04020481574 0.987168141473 362 121 121;362;478;1515;1847 15.1687958333 0.3898 -4.64960416667 19.8184 1.070422454 1.05300672269 169 12 12;169;2094;3099;3273 0.0 0.0 ENST00000454784.8 NC known assembly issue MUC19 has a known sequence error; the CDS cannot yet be annotated 253 473853 chr1:120620337-120620495- NoOverlap chr1 120620337 120620495 - 9.50485088728 53 0.870626238896 3.8926603288 5.61219055848 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;120620336;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120620337-120620495-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A120620337-120620495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03501153991 1.04960840257 1.02553385612 144994573 144994731 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;144994572;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120620337-120620495-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A144994573-144994731&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LASCCGAAAPCSWVEGAIGHAPPHGLPIMSNGYRTLSQHLNDLKKENFSLKLLIYFLEERMQQKYEASREDIYKRVSAGAR Same 475732 chr1:120620337-120620495- 189 189 64 0 206 120620337 120620731 Best 253 253;14723 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:120620337-120620731&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.553459119497 0.410852713178 5.79791320755 0.9133 0.608760377358 5.18915283019 0.686520983123 0.928971736896 2142 Best 2142 2142;13273 24.4118886792 0.9332 1.5778 22.8340886792 1.0433160247 1.04159475042 427 Best 427 427;56178 0.916802969551 chr1:148889754-148889894+ 0.928975905365 chr1:148889754-148889894+ pseudogene phosphodiesterase 4D interacting protein (PDE4DIP) transcribed unprocessed pseudogene (ENSG00000275131) 254 515977 chr17:2770330-2770446+ NoOverlap chr17 2770330 2770446 + 17.2120819153 39 0.711802853437 6.5294513514 10.6826305639 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2770329;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2770330-2770446%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2770330-2770446&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04717705433 1.04937014994 1.03991859426 2673624 2673740 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2673623;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2770330-2770446%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2673624-2673740&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YVQEGRFRIEERTLTAFQWLYSPQQHRILSRADLESPSR Same 517353 chr17:2770330-2770446+ 216 216 38 0 207 2770330 2770446 Best 254 254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2770330-2770446&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641025641026 0.75 27.9880358974 0.9913 13.5112102564 14.476825641 1.03786454643 1.04874619231 388 Best 388 388 49.0024512821 0.6526 18.1554128205 30.8470384615 0.968148747713 1.0411371772 1599 Best 1599 1599 0.0 0.0 coding exon(s) RAP1GAP2 cassette exon 255 585418 chr8:133515503-133515715+ NoOverlap chr8 133515503 133515715 + 7.17609577364 71 0.394298928537 -2.54266200624 9.71875777988 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;133515502;213;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A133515503-133515715%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A133515503-133515715&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.715786139094 1.04935604057 0.981803495442 134527746 134527958 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;134527745;213;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A133515503-133515715%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A134527746-134527958&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPYE*GFDPVGSGHLPFSIKFFLEVMTFLLFDGEIFLLLPLP*VFQTSNLKLIISTALILIIILILGLAYE Same 586356 chr8:133515503-133515715+ 482 482 -227 33 208 133515503 133516257 Best 255 255;36022 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:133515503-133516257&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.389671361502 0.133962264151 -1.23856901408 0.0787 -2.83295070423 1.59438169014 -0.0128750119173 0.54242614711 49122 32646 32646;49122 35.0862267606 0.651 3.44888873239 31.6373380282 0.884389421729 1.01641486024 2179 Best 2179 2179;3077 0.0 0.797986191501 chrM:10059-10404+ ENST00000399640.3,ENST00000518298.5 AntiUTR5intron,AntiNCintron pseudogene mitochondrially encoded NADH dehydrogenase 3 (MT-ND3) pseudogene (ENSG00000283176) 256 568848 chr5:136192216-136192524- NoOverlap chr5 136192216 136192524 - 8.48555625811 103 0.654793073589 3.16463298527 5.32092327283 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;136192215;309;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A136192216-136192524-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A136192216-136192524&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0425958237 1.04914295084 1.01708346552 135527904 135528212 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;135527903;309;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A136192216-136192524-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A135527904-135528212&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMYGDIFNATGGPEAAVGSALAPGATVKAEGALPLELATARGMRDGAATKPDLPTYLLLFFLLLLSVALVVLFIGCQLRHSAFAALPHDRSLRDARAPWKTRPV Same 569857 chr5:136192216-136192524- 157 157 99 0 209 136192216 136192524 Best 256 256 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:136192216-136192524&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.708737864078 1.0874811463 15.1841970874 0.8725 5.52250582524 9.66169126214 1.02380519809 1.04656508308 540 Best 540 540 24.2534446602 0.6507 1.69543980583 22.5580048544 1.01141160644 1.04126790833 921 Best 921 921 0.0 0.123688418965 chr11:118893596-118894663+ ENST00000607574.1 NC protein-coding gene protein-coding gene ENSG00000271824 257 500546 chr13:113973839-113973997- NoOverlap chr13 113973839 113973997 - 7.99129996603 53 0.746915590258 0.574428177105 7.41687178893 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;113973838;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113973839-113973997-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A113973839-113973997&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01847268748 1.04906243079 1.04815963469 114743250 114743408 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;114743249;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113973839-113973997-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A114743250-114743408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MEKDTGTTHRRHRPGLRALPSGVALGHLKAASEASELQRSRSLGGLQPEGDPPSRPR Same 502558 chr13:113973839-113973997- 220 220 37 0 210 113973839 113973997 Best 257 257 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:113973839-113973997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.691823899371 0.315789473684 10.6640603774 0.7434 -0.363188679245 11.0272490566 1.05180112564 1.04797662356 234 Best 234 234 9.97915849057 0.3216 -2.47155283019 12.4507113208 0.711012278779 0.96786037508 2771 Best 2771 2771 0.0 0.106676046945 chr22:31133098-31133235+ protein-coding gene protein-coding gene ENSG00000283199 258 582911 chr7:143643888-143644079- NoOverlap chr7 143643888 143644079 - 7.69957346609 64 0.495506218051 0.700137472362 6.99943599373 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143643887;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143643888-143644079-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143643888-143644079&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.871552910015 1.04906058723 1.05014187807 143340981 143341172 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143340980;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143643888-143644079-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143340981-143341172&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QMQENLAPWGELATDNIILTVPTTNLQALKDPEPVLRLWDEMMQAVARLAAEPFPFRRPERIVADVQISAGGCSQGILLVSGNHVSITLPFMNVQNV Same 583840 chr7:143643888-143644079- 431 431 -173 0 72 143639739 143647639 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.619791666667 0.325607687959 21.0324046875 0.9619 5.8743921875 15.1580125 0.92985326457 0.97695161199 1189 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 49.8197 0.9189 10.56425 39.25545 0.991867691355 0.963271898964 1244 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.96889096961 chr7:143723211-143723450+ 0.799110271477 chr7:143723211-143723450+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 259 572842 chr6:133953283-133953441+ NoOverlap chr6 133953283 133953441 + 8.77856025778 53 0.888426319797 2.51572646974 6.26283378804 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;133953282;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A133953283-133953441%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A133953283-133953441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04211529626 1.04904252476 1.04353535825 134274421 134274579 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;134274420;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A133953283-133953441%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A134274421-134274579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLLATGRGGSSMETGERARLILILVLQLLLRIRRNRQQRCRRVLSHRSLFPR*PPRRPWAQGAR Same 573869 chr6:133953283-133953441+ 184 184 75 4 211 133953198 133953686 Best 259 259;12601;37187 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:133953198-133953686&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.685534591195 0.952431289641 7.54851509434 0.9201 0.838081132075 6.71043396226 0.858327794606 1.00646296281 1434 Best 1434 1434;4264;65751 5.31310377358 0.342 -2.14236037736 7.45546415094 0.398379267089 0.819938906997 3973 Best 3973 3973;16045;52796 0.0 0.0 ENST00000237264.8,ENST00000416965.5 UTR5,UTR5intron not annotated putative regulatory region 260 530973 chr19:35791034-35791195- NoOverlap chr19 35791034 35791195 - 7.3411390214 54 0.676061137814 -0.357464847741 7.69860386914 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35791033;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35791034-35791195-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35791034-35791195&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.947453440091 1.04895532726 1.04546635299 36281936 36282097 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36281935;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35791034-35791195-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36281936-36282097&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLGLCWACRPGPLLQQVLKALLFLQAHWRAHSGFSSHTV*LVQPGLAKVGHLEHRRLLRQR Same 532440 chr19:35791034-35791195- 299 299 -39 20 212 35784826 35806955 Best 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.679012345679 0.325192372031 8.17070925926 0.9279 -7.13553148148 15.3062407407 1.04428009346 0.950949727521 318 Best 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 8.02161666667 0.5775 -9.92823888889 17.9498555556 0.92163320254 1.06827877105 2002 Best 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.124607046427 chr17:58611161-58611339- ENST00000433059.1 NC pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 261 591953 chr9:41044507-41044626- NoOverlap chr9 41044507 41044626 - 14.4159800127 40 0.771718165866 3.2428333339 11.1731466788 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;41044506;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41044507-41044626-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A41044507-41044626&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04560478466 1.04884980163 1.0061032308 71002497 71002378 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;71002496;-118;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41044507-41044626-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A71002497-71002378&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YLSWVQSMTFSFVFLSLVEIVDPVDIYLNLLQTIFDFHAIKSLLTGPSQLKIRVDAMHGGK Different 592908 chr9:41044501-41044626- 231 231 30 0 171 41039613 41053896 205 205;261;1694;3615;17582;51960 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:41039613-41053896&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.475 0.295566502463 18.0668175 0.8505 6.1628825 11.903935 1.05639964967 1.05048676332 187 Best 187 187;248;261;371;844;4863 53.2440275 0.9533 10.873585 42.3704425 0.963006349831 0.989313710226 1663 1512 1512;1518;1550;1553;1648;1663 0.98375416477 chr9:68387463-68387588+ 0.989429481929 chr9:68387463-68387588+ ENST00000613141.1,ENST00000617940.1 NC,AntiNCintron pseudogene PGM5P2 unprocessed pseudogene (ENSG00000277778) 262 483225 chr11:1081667-1081789+ NoOverlap chr11 1081667 1081789 + 8.94315120178 41 0.605932037805 0.516007262759 8.42714393902 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1081666;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1081667-1081789%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1081667-1081789&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.93410909652 1.04866571124 1.04468004601 1079663 1079785 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1079662;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1081667-1081789%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1079663-1079785&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TCPGNLVYLESGSPCMDTCSHLEVSSLCEEHRMDGCFCPEGACGGWPRPGTAHQMR Same 485155 chr11:1081667-1081789+ 351 351 -89 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.650406504065 0.461538461538 18.5594536585 0.9228 0.319973170732 18.2394804878 1.03792226288 0.954689933722 386 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 37.2266487805 0.9054 -0.912782926829 38.1394317073 0.980002362262 0.971562591662 1422 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0903618635826 chr11:1030213-1030335- 0.353834378535 chr11:1164407-1164532+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 263 579721 chr7:142802107-142802211+ NoOverlap chr7 142802107 142802211 + 14.0533113607 35 0.91729610132 -0.0147513576916 14.0680627184 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142802106;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142802107-142802211%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142802107-142802211&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05128587767 1.04857937926 0.975631707106 142499791 142499895 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142499790;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142802107-142802211%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142499791-142499895&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YLHALFLSTESYQQGVLSATILYEILLGKATLYAVLVSALVLMAMVR None NA NA 0 213 142791723 142802211 Best 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.233592880979 20.5226942857 0.9812 0.610851428571 19.9118428571 1.05159748613 0.961425400874 239 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 22.1835885714 0.3947 -1.62458571429 23.8081742857 1.09134677818 1.05145203041 75 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.0 ENST00000466254.1 NC immunoglobulin segment overlaps an immunoglobulin region 264 528021 chr19:32826242-32826355+ NoOverlap chr19 32826242 32826355 + 12.5554736515 38 0.838816542386 -0.343760597078 12.8992342486 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;32826241;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A32826242-32826355%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A32826242-32826355&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05988525897 1.0485047488 0.960144821467 33317148 33317261 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;33317147;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A32826242-32826355%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A33317148-33317261&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INECAGLSSSSFHPQIKWFQKEDVVILKIRIRNVKDYKCQYLRDRVVFR Same 529468 chr19:32826242-32826355+ 234 234 30 0 214 32826242 32826736 Best 264 264;574;1303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:32826242-32826736&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.350877192982 0.583120204604 22.2427105263 1.0 0.459878947368 21.7828315789 1.05076061162 0.958172169642 251 Best 251 251;551;665 20.0715 0.6617 -7.96943947368 28.0409394737 1.07431270775 1.0143364243 149 Best 149 149;1517;1770 0.0 0.0 ENST00000564769.2 NC coding exon(s) TDRD12 alternative final coding exons 265 495236 chr12:51199747-51199866- NoOverlap chr12 51199747 51199866 - 9.72753498238 40 0.927113374533 4.29021999752 5.43731498485 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;51199746;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51199747-51199866-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A51199747-51199866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08348933946 1.04810833758 0.994887877214 51593530 51593649 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;51593529;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51199747-51199866-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A51593530-51593649&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QAHSLSFFLSMPCEVKSPPGIPPSPATAIATFSQAPSQPQASQTLTPLAVQAAPQVR Same 497233 chr12:51199747-51199866- 226 226 39 0 215 51196844 51218124 Best 265 265;283;557;693;1092;2383;53800;58134;68865;69357 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:51196844-51218124&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.34188034188 14.2814025 0.9996 3.613995 10.6674075 1.07208350803 1.05361963672 69 Best 69 69;438;866;867;1487;2229;24410;46155;50649;71456 19.986755 0.5828 3.981655 16.0051 1.06944143031 1.0005689341 172 Best 172 172;288;697;1392;1579;3071;9854;33434;34785;72898 0.0 0.0665179645813 chr11:124751423-124751580- ENST00000389243.8,ENST00000548692.1,ENST00000546685.5 UTR5,NC,NCintron coding exon(s) POU6F1 first coding exons 266 703103 chr4:145760752-145761126- Extension chr4 145760752 145761126 - 8.70033759728 125 0.690025543603 3.1910552012 5.50928239608 chr4:145760752-145761597- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;145760751;375;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A145760752-145761126-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A145760752-145761126&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.995315183327 1.04785579975 1.00619029146 146681904 146682278 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;146681903;375;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A145760752-145761126-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A146681904-146682278&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPAGPGAPLLVVGSSRNLLSPLSVMSASQALQTVALSAAHGSSSEPNLALKALAFNGSPLRFDKYRNSDFAHLIPLTMLYPKNHLDLTFHPPRPQTAPPSIPSPKHSFLAYLGLRERAETV*GQPCSVPKTER Same 703724 chr4:145760752-145761126- 141 141 125 9 216 145760752 145763106 Best 266 266;24988;47053;73636 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:145760752-145763106&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.578666666667 0.412768299395 14.6373952 0.9965 5.327 9.3103952 1.04936959326 1.02665780671 268 Best 268 268;7199;31923;70489 25.7791184 0.8828 5.4675256 20.3115928 1.02975562044 0.991900987479 626 Best 626 626;10893;21541;65202 0.0 0.0227708644302 chr16:30781718-30784254- ENST00000503462.1,ENST00000379448.8,ENST00000510096.1 Extension3p,UTR3,AntiNCintron pseudo-exon ZNF827 has pseudo repeats downstream of the STOP codon. 267 483233 chr11:1084589-1084717+ NoOverlap chr11 1084589 1084717 + 12.3819441296 43 0.740876258204 0.619721041169 11.7622230885 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1084588;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1084589-1084717%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1084589-1084717&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0565281694 1.04715914764 0.96364638156 1082585 1082713 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1082584;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1084589-1084717%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1082585-1082713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGHTLPPCLTARPPCSVAQRCKYDTCNCQNNEDCLCAALSSYARACTAKGVMLWGWREHVCSECRPR Same 485163 chr11:1084589-1084717+ 254 254 13 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.627906976744 0.787545787546 22.8181767442 0.9411 3.30503488372 19.5131418605 1.02875315061 0.956681834382 494 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 45.5012209302 0.9683 -0.349469767442 45.8506906977 0.969296231351 0.951455767081 1583 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.115836308976 chr11:1174496-1174622+ 0.347124517414 chr11:1174496-1174622+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 268 491111 chr12:40445518-40445643+ NoOverlap chr12 40445518 40445643 + 15.231769031 42 0.836248533136 6.28046419953 8.95130483148 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40445517;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40445518-40445643%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40445518-40445643&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02946013713 1.04652708647 1.04701269784 40839320 40839445 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40839319;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40445518-40445643%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40839320-40839445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YNSITAVYCDYYNAPGECRWHYEPCGTVTAKTCKDQLVGQKFSSLLEGK Same 493088 chr12:40445518-40445643+ 229 229 39 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.436507936508 0.334217506631 24.6360095238 0.9827 10.9887095238 13.6473 1.01179363561 1.04224880054 638 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 44.3550047619 0.9464 2.73847142857 41.6165333333 0.967110920263 0.965271574934 1614 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.28090157558 chr11:1180022-1180150+ ENST00000454784.8 NC redundant PhyloCSF signals are accounted for elsewhere on the list 269 566610 chr5:175707783-175707866+ NoOverlap chr5 175707783 175707866 + 5.83529277784 28 0.792251686667 -6.94587850571 12.7811712836 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;175707782;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A175707783-175707866%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A175707783-175707866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.653092580672 1.04641041128 0.942688988972 175134786 175134869 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;175134785;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A175707783-175707866%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A175134786-175134869&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPALSCTTCSSNLLSCCKSLWGLRFLQRHMGGPSEELSGEPLSEEPQK Same 567608 chr5:175707783-175707866+ 158 158 111 0 217 175707783 175707866 Best 269 269 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:175707783-175707866&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.607142857143 0.131661442006 3.33117142857 0.9963 -15.3871785714 18.71835 0.862486404685 0.946543781915 1417 Best 1417 1417 3.33117142857 0.3114 -15.3871785714 18.71835 0.53998068557 1.07594080227 3389 Best 3389 3389 0.0 0.0 coding exon(s) HRH2 alternative final coding exon 270 582920 chr7:143647286-143647639- NoOverlap chr7 143647286 143647639 - 7.7931118246 118 0.673056834684 -2.77810001443 10.571211839 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143647285;354;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143647286-143647639-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143647286-143647639&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.994633809922 1.04606400738 0.991865295692 143344379 143344732 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143344378;354;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143647286-143647639-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143344379-143344732&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YGEDVRQDQQQLLEGISELDIRTGGVPSQLLVHGALAFPLGLDASLNCFLAAAHYGRGRVVLAAHECLLCAPKMGPFLLNAVRWLARGQTGKVGVNTNLKDLCPLLSEHGLQCSLEPHLNSDLCVYCCK Same 583849 chr7:143647286-143647639- 424 424 -154 0 72 143639739 143647639 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.61581920904 0.208726415094 15.7772508475 0.958 -2.97031525424 18.7475661017 1.03593445822 0.965720928517 406 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 34.6680805085 0.8908 -8.45923474576 43.1273152542 1.00942943553 1.00497578989 950 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.996579043748 chr7:143719683-143720674+ 0.815852330148 chr7:143719683-143720674+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 271 588990 chr9:38462104-38462229+ NoOverlap chr9 38462104 38462229 + 8.93663327467 42 0.860232809077 3.09444292954 5.84219034513 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;38462103;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A38462104-38462229%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A38462104-38462229&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08171543702 1.04603828622 1.02036954048 38462101 38462226 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;38462100;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A38462104-38462229%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A38462101-38462226&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVGMSQSHLLASQTVSVVCRPLDFVGTFSNRWSYGITFGATANKVMFLFSEGYQPLQIPQWAQGTGDTSYLLETAS Same 589934 chr9:38462104-38462229+ 204 204 67 0 144 38456161 38469956 172 172;271;22158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:38456161-38469956&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539682539683 0.328125 11.4884 0.9371 2.1306047619 9.3577952381 1.02652930119 1.04981292315 508 185 185;508;3383 24.2582333333 0.5894 3.78131904762 20.4769142857 1.10658033207 1.04176271361 39 21 21;39;2913 0.0 0.0 pseudogene STRA6-like (Stra6l) pseudogene (ENSG00000283162) 272 558294 chr4:3500691-3500813+ NoOverlap chr4 3500691 3500813 + 8.95379271158 41 0.541433640933 -0.318565851668 9.27235856325 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;3500690;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A3500691-3500813%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A3500691-3500813&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.846968442862 1.04592782372 1.02409036131 3502418 3502540 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;3502417;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A3500691-3500813%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A3502418-3502540&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILSGAGASLYAQIDIMATETAHRVGVRHARAREEQLSELEQRKAAPQ Same 559270 chr4:3500691-3500813+ 432 432 -160 0 218 3500310 3505629 Best 272 272;1209;38989;46929;51176 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:3500310-3505629&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.707317073171 0.731351351351 21.4099390244 0.7331 3.67984390244 17.730095122 1.0332986948 0.973144541038 442 Best 442 442;813;28076;33984;34533 37.6876658537 0.6568 5.2680097561 32.4196560976 0.969544502135 1.01642294963 1580 393 393;793;1580;2806;42450 0.0 0.052652727479 chr12:133227824-133227947- ENST00000512714.1 NC coding exon(s) DOK7 3 3' coding exons 273 467951 chr1:169795103-169795213+ NoOverlap chr1 169795103 169795213 + 16.8442785643 37 0.944118987378 7.01552437689 9.82875418744 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;169795102;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A169795103-169795213%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A169795103-169795213&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05244246261 1.04582612003 1.05040986476 169764244 169764354 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;169764243;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A169795103-169795213%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A169764244-169764354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VWFEALLFDESMSQEGAVPASAVPLEELSSWPEELCRRELPSVLPRLLISFLGCHFYLEK Same 469817 chr1:169795103-169795213+ 222 222 51 0 219 169795103 169795213 Best 273 273 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:169795103-169795213&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.630630630631 0.725490196078 19.563027027 0.9446 8.36330810811 11.1997189189 1.04455621349 1.05365672271 316 Best 316 316 34.2864891892 0.7042 6.57345135135 27.7130378378 1.00361034355 1.04594416504 1057 Best 1057 1057 0.0 0.0 ENST00000359326.8,ENST00000459772.5,ENST00000472795.5 UTR5,NC,NCintron coding exon(s) C1orf112 5' coding exon 274 536868 chr2:219271576-219271893+ NoOverlap chr2 219271576 219271893 + 12.2888216492 106 0.623346879314 6.13594246192 6.15287918724 ENST00000490341.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;219271575;318;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219271576-219271893%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A219271576-219271893&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0057063963 1.04579384014 1.03268323243 220136298 220136615 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;220136297;318;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219271576-219271893%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A220136298-220136615&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPDQPGVLPHIHFPLATYAPVISAEKVYHEQLLVAEITNACFEPANQMVKCDPRHGKYMACCLLYHGDVVPKDVNAAIAAIKTKCSIQFVDWCPTGFKVDINHQPPTVVPGSDLVK Same 538236 chr2:219271576-219271893+ 279 279 -5 0 220 219269630 219279492 Best 274 274;812;10599;20617;42437;70571 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:219269630-219279492&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.550314465409 0.167060677699 22.2521650943 0.9668 11.7368688679 10.5152962264 1.03558558389 1.03628775372 408 Best 408 408;491;1561;1860;15870;51627 58.3692566038 0.9896 29.763845283 28.6054113208 0.966567510343 0.994745689951 1616 1012 1012;1034;1527;1616;16190;55697 0.437222988615 chr2:219250352-219251323- 0.391558372651 chr12:49272253-49273227+ ENST00000490341.2,ENST00000473885.5,ENST00000398989.2 CDS,NC,AntiUTR5intron pseudo-exon TUBA4B pseudo-exon 275 501755 chr14:62128023-62128391+ NoOverlap chr14 62128023 62128391 + 8.37885687219 123 0.966911741445 0.245641472863 8.13321539932 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;62128022;369;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A62128023-62128391%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A62128023-62128391&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.993958914416 1.04566560211 1.04116183961 62594741 62595109 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;62594740;369;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A62128023-62128391%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A62594741-62595109&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVVFVFLNIDLMIMFAFQHLILPEDRTCILKLSLEKLRFLEDPETYLRRSVLINNLLRKIHLETEKESYEYFKEAPCYKTAYSDTRKRLKFMVQECCSQSLYYEELHSYHIVPYASENAIYEMGYTSSHLEQNSQLLIYKMN Same 503655 chr14:62128023-62128391+ 166 166 109 0 221 62127829 62128391 Best 275 275;6410;17264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:62127829-62128391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.390243902439 0.28560371517 9.70273414634 0.9971 1.39340162602 8.30933252033 1.05308455419 1.0235726964 220 Best 220 220;10643;11309 25.4733788618 0.8549 4.2192097561 21.2541691057 1.04523684591 1.00369848563 398 Best 398 398;3869;10933 0.0 0.0 ENST00000334389.5 NC pseudogene unitary pseudogene ENSG00000186369 276 492182 chr12:57624500-57624604+ NoOverlap chr12 57624500 57624604 + 14.7563828715 35 0.840497444114 9.04776283077 5.70862004076 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;57624499;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57624500-57624604%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A57624500-57624604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04955297084 1.04540018797 0.975308262665 58018283 58018387 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;58018282;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57624500-57624604%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A58018283-58018387&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WPGFSFGQSTPIPILQAVWMVTWVAVVTLSVDLGLAVGVVFSMMTVVCRTR Same 494163 chr12:57624500-57624604+ 243 243 33 0 115 57604808 57624781 137 137;276;887;2361;32008;57382;64750;68543 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:57604808-57624781&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.609523809524 0.222693531283 20.2760085714 0.9903 12.3561771429 7.91983142857 1.05590915872 0.979310303836 192 Best 192 192;198;227;1040;9332;22257;31301;59213 42.7406571429 0.7959 20.9849714286 21.7556857143 0.994042234941 1.03155112894 1211 667 667;1211;1268;2339;27890;29446;30873;52552 0.0 0.0518628637805 chr3:48629872-48629978- ENST00000440686.5,ENST00000320442.8,ENST00000553142.5 NC,CDSintron,AntiNC coding exon(s) SLC26A10 alternative final exon 277 555297 chr3:36738975-36739085- NoOverlap chr3 36738975 36739085 - 13.1120405117 37 0.832358611759 -0.560289147788 13.6723296594 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;36738974;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A36738975-36739085-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A36738975-36739085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05635882072 1.04518205941 0.960993782906 36780466 36780576 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;36780465;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A36738975-36739085-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A36780466-36780576&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LILCCPFLVAGQQGLCDHSLKYLSSRITERKLQGSWLPASRGNLEKPFLGPR Same 556250 chr3:36738975-36739085- 246 246 31 0 47 36738660 36739085 53 53;277 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:36738660-36739085&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.522522522523 0.396428571429 21.0594756757 0.9995 2.06398378378 18.9954918919 1.03829160764 0.966786472994 382 194 194;382 30.4921297297 0.7754 -2.72315135135 33.2152810811 1.01142129847 0.996922500223 920 Best 920 920;1021 0.0 0.0 ENST00000416516.2 UTR5 coding exon(s) DCLK3 5' extension 278 548222 chr22:25112169-25112471+ NoOverlap chr22 25112169 25112471 + 17.6608731735 101 0.798086579086 9.18852174961 8.47235142388 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;25112168;303;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25112169-25112471%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A25112169-25112471&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08631064463 1.04512984456 1.02905972433 25508136 25508438 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;25508135;303;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25112169-25112471%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A25508136-25508438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLSPSLTSFFPLLLAGPMDYLGDKLTVAQTHMTQWMGTVRRSFQEALNLVTTTVGHERTSAESASRTPFKRTSSFRHLASRSRESFRRFSARSQQRFSSLRKRHTDSEPPDIVSLLCFK Same 549590 chr22:25112169-25112471+ 170 170 108 0 222 25111740 25112471 Best 278 278;30239 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:25111740-25112471&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.577557755776 0.637894736842 24.913360396 0.9041 13.6057950495 11.3075653465 1.00354683689 1.02798975802 705 Best 705 705;57052 47.5685267327 0.7941 22.4711732673 25.0973534653 1.0553158511 1.00545838228 261 Best 261 261;47776 0.0 0.0 ENST00000358431.7,ENST00000494730.2,ENST00000366110.4 CDSintron,NCintron,AntiNC coding exon(s) KIAA1671 5' coding exon 279 497416 chr12:122226412-122226567- NoOverlap chr12 122226412 122226567 - 8.17176151204 52 0.754676596769 1.13412494786 7.03763656418 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;122226411;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A122226412-122226567-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A122226412-122226567&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0280017034 1.04497818371 1.05058166279 122710959 122711114 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;122710958;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A122226412-122226567-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A122710959-122711114&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAMPASSTVHVLQLLRELLAFVLLSYTVLIGALLLAGWTTYFLVLK*QRRRRARPR Same 499428 chr12:122226412-122226567- 233 233 46 6 223 122226015 122226567 Best 279 279;8793;16637 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:122226015-122226567&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.692307692308 0.914482758621 8.49748846154 0.9051 -1.73345384615 10.2309423077 0.982811573359 1.06610027963 882 Best 882 882;50874;72254 23.4707557692 0.721 -3.14798461538 26.6187403846 1.00435689969 1.02092406276 1045 Best 1045 1045;29503;42979 0.0 0.0789566725939 chr3:196947157-196948685- ENST00000413918.5,ENST00000475784.1,ENST00000485724.1,ENST00000535844.1 UTR5,NC,UTR5intron,NCintron protein-coding gene protein-coding gene ENSG00000284934 280 470659 chr1:21950738-21950881- NoOverlap chr1 21950738 21950881 - 10.4668813025 48 0.950102998398 0.753781250988 9.71310005151 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;21950737;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A21950738-21950881-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A21950738-21950881&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04175561845 1.04495715229 0.997849517422 22277231 22277374 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;22277230;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A21950738-21950881-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A22277231-22277374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHCQNFTIALPRGPRTKLPELPLLSNGLFALGCLPKVWEAICSGWSDPEPISKPPSWW Same 472541 chr1:21950738-21950881- 270 270 10 0 224 21950738 21951365 Best 280 280;598;1175;2010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:21950738-21951365&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.164102564103 13.2797520833 0.9787 0.773495833333 12.50625625 1.04675964754 1.02608947864 293 Best 293 293;962;1314;1435 15.0278708333 0.3438 -0.56956875 15.5974395833 0.958341783217 1.01327271575 1720 Best 1720 1720;2814;3146;3452 0.0 0.0 pseudogene unitary pseudogene ENSG00000283234 281 553607 chr3:141721005-141721052+ NoOverlap chr3 141721005 141721052 + 5.49185625836 16 0.973327229725 -9.99823141843 15.4900876768 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;141721004;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141721005-141721052%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A141721005-141721052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.210792929716 1.04487968331 0.937232898464 141439847 141439894 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;141439846;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141721005-141721052%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A141439847-141439894&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSAYLREIDLGNNVLGEMAAANILEALR Same 554556 chr3:141721005-141721052+ 483 483 -202 0 225 141713327 141738361 Best 281 281;1940;3192;3717;12103 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:141713327-141738361&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.0 8.33286875 0.9674 -14.1743 22.50716875 0.685372190826 0.944393727052 2147 1721 1721;2098;2147;3697;14992 8.43169375 0.4342 -16.8145875 25.24628125 0.575567863584 1.07361315105 3244 2737 2737;2887;3244;3826;36452 0.0 0.0 ENST00000474979.3 NC redundant PhyloCSF signals are accounted for elsewhere on the list 282 483220 chr11:1075653-1075919+ NoOverlap chr11 1075653 1075919 + 8.93506739431 89 0.534639094128 -3.00210216909 11.9371695634 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1075652;267;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1075653-1075919%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1075653-1075919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05298238387 1.04468261164 0.981543832072 1075653 1075919 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1075652;267;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1075653-1075919%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1075653-1075919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGQPSPSGATHPSFPAAPSEGRTRNHGHNVCSTWGNFHYKTFDGDVFRFPGPCDYNFASDCRGSYKEFAVHLKRGPGQAEAPAGVESILLTIKDDTIYLTRHLAVLNGAV Same 485150 chr11:1075653-1075919+ 535 535 -253 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.640449438202 0.674242424242 18.5219865169 0.9012 -4.40025730337 22.9222438202 0.955078054467 1.11640015334 1061 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 35.8517921348 0.8784 -14.090058427 49.9418505618 1.02870933445 1.0726682408 639 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0649343710297 chr11:1161907-1162168+ 0.235822903939 chr11:1161907-1162168+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 283 495237 chr12:51204264-51204368- NoOverlap chr12 51204264 51204368 - 13.8629427697 35 0.969405661097 5.92143136007 7.94151140962 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;51204263;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51204264-51204368-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A51204264-51204368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0474789108 1.04444780427 1.05201404684 51598047 51598151 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;51598046;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51204264-51204368-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A51598047-51598151&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELQPAPGSGILTEHTALWTGGLHPEVPSPLSPNHTQSFGPCGYTGPYPNSAPVLCLQVIVMSGHETIRVLEVGVDAQLPAEEESKGLEGVAAEGSQSGDPAEASQAAGEAGPDNLGSSAEATGTRPSPPPGTAPPECQVPPVVPGEPA Same 497234 chr12:51204264-51204368- 230 230 53 0 215 51196844 51218124 265 265;283;557;693;1092;2383;53800;58134;68865;69357 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:51196844-51218124&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.590476190476 0.460526315789 24.1561 1.0 10.0959685714 14.0601314286 1.03365910357 1.04854392306 438 69 69;438;866;867;1487;2229;24410;46155;50649;71456 46.0720257143 0.8255 19.7521971429 26.3198285714 0.969774101738 1.04969722321 1579 172 172;288;697;1392;1579;3071;9854;33434;34785;72898 0.0 0.0 ENST00000389243.8,ENST00000546685.5 UTR5,NC coding exon(s) POU6F1 first coding exons 284 525231 chr18:5398876-5399016- NoOverlap chr18 5398876 5399016 - 19.7575445644 47 0.950070532394 8.71438715916 11.0431574053 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;5398875;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A5398876-5399016-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A5398876-5399016&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03558081367 1.04411940268 1.02889027779 5398875 5399015 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;5398874;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A5398876-5399016-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A5398875-5399015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IIPGLAEYEVLETLADEKSKRGPEVQTTQRKLSESLAPIKEAESRRQSPEEDDLK Same 526674 chr18:5398876-5399016- 245 245 39 0 226 5398651 5407505 Best 284 284;504;528;38180 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:5398651-5407505&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.560283687943 0.63350449294 31.4897510638 0.9584 14.8288170213 16.6609340426 1.05495250355 1.02565814492 201 Best 201 201;410;974;20747 42.7714425532 0.6804 16.6371404255 26.1343021277 0.932619866377 1.0378193415 1932 692 692;1608;1932;5206 0.0 0.0 ENST00000578618.5,ENST00000341928.6,ENST00000542652.6 NC,CDSintron,NCintron coding exon(s) EPB41L3 cassette exon 285 560483 chr4:164770444-164770545+ NoOverlap chr4 164770444 164770545 + 10.3403501422 34 0.885496299687 3.51009110098 6.8302590412 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;164770443;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A164770444-164770545%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A164770444-164770545&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07499484172 1.04365877559 1.03690876738 165691596 165691697 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;165691595;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A164770444-164770545%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A165691596-165691697&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WWFMELPYTNLEMAFILLAFVIFSLFTLASIYTTPDDSNEGK Same 561467 chr4:164770444-164770545+ 221 221 64 0 227 164770444 164770545 Best 285 285 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:164770444-164770545&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.411764705882 0.251851851852 16.5474705882 1.0 7.33386764706 9.21360294118 1.06971260894 1.02779133315 86 Best 86 86 22.5980823529 0.6125 7.32247647059 15.2756058824 1.05576500738 0.970413090275 258 Best 258 258 0.0 0.0 ENST00000507311.1 NC protein-coding gene protein-coding gene ENSG00000248771 286 594615 chrX:12721220-12721843+ NoOverlap chrX 12721220 12721843 + 7.10083600936 208 0.898427220334 2.89705336176 4.2037826476 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;12721219;624;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A12721220-12721843%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A12721220-12721843&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02995407134 1.04334372294 0.960813626831 12739339 12739962 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;12739338;624;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A12721220-12721843%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A12739339-12739962&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEATVQVSCLYRPQMTQAMPEPSSPCLAVAIQKQRGELSRGSVLKVWAEDLRDPDDLDFSNLAFDARIARINALKESTYAMPDGFLAAQNDANELLCLVRATKEKREESRPEAYDLTLSQYKQLLSIESRQLGSACRKMAMAEKSPEEMLLAMTSSFQVLCCLTEACMRLVKVVNSETQRQEIVGKIDEVVINYICLLKAAEAATGKNPGDPNVGLSARHSTTMAALVSTLTRSLKR Same 595255 chrX:12721220-12721843+ 199 199 87 0 228 12717136 12721843 Best 286 286;461;7085;22580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:12717136-12721843&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.509615384615 0.520826709062 9.21014951923 0.9586 3.45681923077 5.75333028846 1.03058535276 0.951947800951 475 Best 475 475;724;3972;5318 18.3039692308 0.9048 0.948485576923 17.3554836538 0.99966707386 1.00720103621 1117 309 309;1117;2159;2328 0.0 0.158100800241 chrX:107600303-107603373+ ENST00000380682.5 UTR3 coding exon(s) FRMPD4 3' extended final exon 287 553969 chr3:167917330-167917494+ NoOverlap chr3 167917330 167917494 + 7.91711827733 55 0.881389125866 -0.0604728644544 7.97759114179 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;167917329;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A167917330-167917494%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A167917330-167917494&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02910063885 1.04295196315 1.03743516458 167635118 167635282 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;167635117;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A167917330-167917494%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A167635118-167635282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NHLISFKQLPRIPQIQHLSLAENHIETLTGFSSLRCTPLESLILKRNPCEFHQNYRK Same 554918 chr3:167917330-167917494+ 203 203 84 0 229 167912863 167917494 Best 287 287;728;2041;2778 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:167912863-167917494&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.430303030303 0.277777777778 9.64065090909 0.9512 -3.65290181818 13.2935527273 1.03494972346 1.00382970705 421 Best 421 421;1323;1943;3547 24.0551727273 0.7592 -3.17863272727 27.2338054545 0.990363852828 1.01607634906 1276 411 411;622;1016;1276 0.0 0.0 ENST00000459923.5 NCintron pseudogene unitary pseuodgene ENSG00000244227 288 491100 chr12:40436614-40436736+ NoOverlap chr12 40436614 40436736 + 13.519214673 41 0.919071358258 0.962739019859 12.5564756532 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40436613;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40436614-40436736%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40436614-40436736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03868796259 1.04293202515 0.965240163877 40830416 40830538 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40830415;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40436614-40436736%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40830416-40830538&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CNINLFLIFKECKKYTCTCENSQDCLCTILGNYVKACAEKETYIVGWRTGLCGK Same 493077 chr12:40436614-40436736+ 264 264 24 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.406504065041 0.213541666667 19.3909926829 0.9827 1.16874634146 18.2222463415 1.02184022659 0.958244351966 558 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 39.0873341463 0.9053 -5.50137073171 44.588704878 0.997851377976 0.94611208444 1143 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.256930077681 chr11:1174496-1174622+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 289 479247 chr10:122792298-122792438+ NoOverlap chr10 122792298 122792438 + 12.1144445322 47 0.873238759864 3.37052555414 8.74391897803 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122792297;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122792298-122792438%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122792298-122792438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01776084133 1.04274620297 1.03253681501 124551814 124551954 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124551813;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122792298-122792438%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124551814-124551954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASLVKPTMGLSSAFTGGSNSCGGVISSLSGSFSSPWYPTNYPTNLECVWVIHVAEKFHIELMIPSLK Same 481152 chr10:122792298-122792438+ 228 228 61 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.503546099291 0.225961538462 19.5229234043 0.9382 3.5357106383 15.987212766 1.0003912971 0.977329920081 735 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 22.3668574468 0.4152 1.66606595745 20.7007914894 1.1462130074 1.04344504198 1 Best 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.0573776006922 chr10:122629840-122629993+ 0.0405256686697 chr10:122629840-122629993+ ENST00000439464.6 NC pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 290 477080 chr10:27741453-27741512+ NoOverlap chr10 27741453 27741512 + 3.52683008015 20 0.820328831922 -11.7155049264 15.2423350066 ENST00000375790.9,ENST00000419761.5,ENST00000460919.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;27741452;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A27741453-27741512%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A27741453-27741512&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0458113038755 1.04257020938 0.909300959344 28030382 28030441 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;28030381;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A27741453-27741512%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A28030382-28030441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HVLQGLPLVPHLPAILPGAGTWGEEAALVSDAFARPDAPRPGQAR Same 478973 chr10:27741453-27741512+ 57 57 233 0 230 27741453 27745817 Best 290 290;22072 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:27741453-27745817&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.683333333333 0.579710144928 -1.11091 0.9808 -20.087625 18.976715 0.501829965561 0.998147581869 3135 Best 3135 3135;17519 -21.086995 0.9484 -52.812605 31.72561 0.1031282396 0.924870605174 11216 Best 11216 11216;67029 0.0 0.0 ENST00000375790.9 AntiCDS not annotated putative regulatory region 291 500650 chr14:21736739-21736930+ NoOverlap chr14 21736739 21736930 + 2.39637350664 64 0.695033426795 -8.56517660897 10.9615501156 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21736738;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21736739-21736930%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21736739-21736930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.168068465074 1.04234606803 0.967118427463 22205021 22205212 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22205020;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21736739-21736930%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22205021-22205212&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTQPISMDSYEGQEVNITCSHNNIATNDYITWYQQFPSQGPRFIIQGYKTKVTNEVASLFIPADRKSSTLSLPR None NA NA 0 231 21736694 21736969 Best 291 291;5329;31683 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21736694-21736969&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.432291666667 0.457142857143 3.2497375 0.7206 -10.5401640625 13.7899015625 0.854663403765 1.02934152081 1450 Best 1450 1450;14549;18625 9.73085625 0.4571 -18.2048734375 27.9357296875 1.01357797317 1.0082773551 882 Best 882 882;4102;12418 0.0 0.0 ENST00000390426.2 NC immunoglobulin segment overlaps an immunoglobulin region 292 531321 chr19:42116895-42117029- NoOverlap chr19 42116895 42117029 - 10.8949578186 45 0.737046701084 5.57461774614 5.32034007245 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;42116894;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A42116895-42117029-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A42116895-42117029&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06459140135 1.04232178076 1.00067079334 42621047 42621181 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;42621046;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A42116895-42117029-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A42621047-42621181&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PLSAFSAPLQPLAPIPAVPDTPQLTALMPAQQQLLLQQAQAQLLAAAVQQSSAAAAANAAAAAAAASASSSTSSSSSSSASSSTSQPPASSGGGDLPPPQPASQPPGTPQLTLSQPIQLTAQVR Same 532792 chr19:42116895-42117029- 255 255 37 0 232 42116895 42117029 Best 292 292 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:42116895-42117029&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.718518518519 0.684331797235 13.9624777778 0.823 6.41791333333 7.54456444444 1.01831277833 1.00295242918 586 Best 586 586 27.7924377778 0.606 8.38698444444 19.4054533333 1.08621103358 1.03090997078 98 Best 98 98 0.0 0.109826945333 chr1:167374108-167374296+ ENST00000524801.6,ENST00000342301.8,ENST00000530982.7 NC,CDSintron,NCintron coding exon(s) POU2F2 alternative coding exons 293 579709 chr7:142791918-142792013+ NoOverlap chr7 142791918 142792013 + 11.8409312516 32 0.923796444648 2.13977507316 9.70115617849 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142791917;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142791918-142792013%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142791918-142792013&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0548322672 1.04216335438 1.04551367561 142498949 142499044 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142498948;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142791918-142792013%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142498949-142499044&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDR None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.625 0.658285714286 17.243084375 0.976 7.7812875 9.461796875 1.0514160609 1.02696707659 244 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 25.382509375 0.5604 4.260771875 21.1217375 1.09988949325 1.04188214284 52 Best 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.0 ENST00000610416.2,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 294 579718 chr7:142801265-142801360+ NoOverlap chr7 142801265 142801360 + 11.8409312516 32 0.923796444648 2.13977507316 9.70115617849 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142801264;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142801265-142801360%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142801265-142801360&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0548322672 1.04216335438 1.04551367561 142498949 142499044 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142498948;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142801265-142801360%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142498949-142499044&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDR None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.625 0.658285714286 16.961946875 0.9788 5.434665625 11.52728125 1.05480857785 1.05523172124 202 Best 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 25.60294375 0.6432 -2.178325 27.78126875 1.07525917718 1.04097050572 144 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.0 ENST00000466254.1 NC immunoglobulin segment overlaps an immunoglobulin region 295 530383 chr19:17393982-17394161- NoOverlap chr19 17393982 17394161 - 12.6205333673 60 0.591302357519 7.96726664975 4.65326671756 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;17393981;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A17393982-17394161-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A17393982-17394161&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05296506966 1.04178164372 0.980449575396 17504791 17504970 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;17504790;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A17393982-17394161-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A17504791-17504970&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GMAEPGPEPGRAWRVLALCGVAVFLAAAAAGGALVAWNLAASAARGPRCPEPGANATAPPGDPPPGVDDLR Same 531846 chr19:17393982-17394161- 266 266 29 0 95 17390521 17394161 112 112;295;427;572;1325 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:17390521-17394161&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.788888888889 0.719280719281 22.0761183333 0.8468 13.0430033333 9.033115 1.03114151298 1.01441999292 468 208 208;465;468;696;802 22.152815 0.3053 12.910305 9.24251 0.911210209454 0.859386781839 2051 577 577;1818;2051;2874;2932 0.0 0.0 protein-coding gene protein-coding gene ENSG00000269720 296 544630 chr20:10413765-10413893- NoOverlap chr20 10413765 10413893 - 7.70120010404 43 0.97280487437 -0.306739407916 8.00793951195 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;10413764;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A10413765-10413893-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A10413765-10413893&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02640776924 1.04172946843 1.04908902001 10394413 10394541 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;10394412;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A10413765-10413893-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A10394413-10394541&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEMKNTSWIRKNWLLVAGISFIGVHLGTYFLQRSAKQSVKFQSQSK Same 546024 chr20:10413765-10413893- 373 373 -77 0 233 10413765 10413893 Best 296 296 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:10413765-10413893&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.387596899225 0.0 10.8996325581 0.9846 -1.66029767442 12.5599302326 1.0612438753 1.03478133169 139 Best 139 139 16.9407488372 0.6983 -5.19744883721 22.1381976744 1.04959468833 1.05256400933 331 Best 331 331 0.0 0.0 ENST00000347364.7,ENST00000609375.1 UTR5,UTR3 protein-coding gene protein-coding gene ENSG00000285508 297 505838 chr14:105854610-105854720- NoOverlap chr14 105854610 105854720 - 13.242218935 37 0.774848595448 -0.377821542121 13.6200404771 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105854609;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105854610-105854720-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105854610-105854720&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05765391774 1.04135621505 0.962768243661 106320715 106320825 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106320714;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105854610-105854720-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106320715-106320825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLNPSPQAGPPTAPPSPPSLFTGVALHRPDVYLLPPAREQLNLRESATITCLVTGFSPADVFVQWMQR None NA NA 0 63 105837465 105856215 70 70;297;303;618;1534;1768;2725;3071;4703;4966;9883;19584;21248 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105837465-105856215&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.813186813187 25.1077432432 0.7877 8.86087567568 16.2468675676 0.997998824005 1.02539779483 760 171 171;488;606;760;1848;2075;2155;2623;3063;3220;4742;9758;24097 40.1845324324 0.5624 5.47412972973 34.7104027027 0.981703537615 1.01161171717 1395 30 30;154;1395;1760;1980;1989;2291;2612;2659;3437;3454;6249;20954 0.0 0.0 ENST00000390559.6,ENST00000612473.1 NC,NCintron coding exon(s) IGHM alternative final coding exons 298 531029 chr19:37829881-37829973- NoOverlap chr19 37829881 37829973 - 8.84552904339 31 0.756220389499 -4.99753242347 13.8430614669 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37829880;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37829881-37829973-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37829881-37829973&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.96390809067 1.04128466391 0.934620723685 38320521 38320613 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38320520;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37829881-37829973-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38320521-38320613&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRQELQGLETLVNKRFIAFDNTVPHVVEEER Same 532496 chr19:37829881-37829973- 239 239 59 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.47311827957 0.40522875817 11.8531258065 0.9172 -6.22637419355 18.0795 1.03011623544 0.949766202034 482 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 12.1746322581 0.4608 -10.2917935484 22.4664258065 0.970704118911 1.06969807727 1566 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.175603857803 chr19:37892578-37895456- 0.552582883297 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 299 534731 chr2:110342709-110342864+ NoOverlap chr2 110342709 110342864 + 5.23990183954 52 0.745287603218 -3.85368271287 9.09358455241 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110342708;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110342709-110342864%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110342709-110342864&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.753685666868 1.04118287824 1.01938012326 111100286 111100441 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111100285;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110342709-110342864%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111100286-111100441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHFCPRGTSLPQPCPAGSYSYLTGQASCFPCPTGYYCPENVTNYSRHPCPAGFYCPEVSA Same 536083 chr2:110342709-110342864+ 265 265 34 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.196638655462 10.2873365385 0.7662 0.922080769231 9.36525576923 0.995461088029 1.05541172874 784 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 31.5997557692 0.8601 4.85282692308 26.7469288462 0.984503144267 1.03184670818 1356 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 300 552891 chr3:88059269-88059412+ NoOverlap chr3 88059269 88059412 + 10.4648353482 48 0.830126395565 6.06326048635 4.40157486188 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88059268;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88059269-88059412%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88059269-88059412&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04768286256 1.04114077279 0.951173275577 88108419 88108562 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88108418;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88059269-88059412%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88108419-88108562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLRRRRRRRGWYALGGESLMAEEESDQEAERLGEELVAIVESPLGPVGLR Same 553833 chr3:88059269-88059412+ 260 260 40 0 234 88059269 88059508 Best 300 300;3037;8717 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88059269-88059508&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.708333333333 0.947368421053 9.61752083333 0.859 4.81115 4.80637083333 0.815331129741 0.882127421356 1610 Best 1610 1610;14011;70294 11.5669583333 0.4587 2.7603375 8.80662083333 0.724806815582 0.852972264725 2728 Best 2728 2728;5623;47806 0.0 0.0 ENST00000473136.4,ENST00000462901.5 NC,AntiUTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 301 579651 chr7:142308822-142308872+ NoOverlap chr7 142308822 142308872 + 7.09017054123 17 0.871356571926 -12.6965235051 19.7866940463 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142308821;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142308822-142308872%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142308822-142308872&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.483052394198 1.0411235964 1.0374553098 142008645 142008695 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142008644;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142308822-142308872%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142008645-142008695&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIKCEQNLGHDTMYWYKQDSK None NA NA 0 235 142308759 142313661 Best 301 301;580;755;2301;6419;13330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142308759-142313661&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.313725490196 0.0 15.0099882353 0.8967 -16.6662588235 31.6762470588 0.628363857407 1.09791890668 2398 920 920;2287;2398;2499;3331;6365 18.8858352941 0.5402 -29.0624352941 47.9482705882 0.739832751424 0.830538619765 2669 1287 1287;2253;2669;3117;3138;4592 0.0 0.0 ENST00000390387.3 NC immunoglobulin segment overlaps an immunoglobulin region 302 476343 chr1:237942707-237943099- NoOverlap chr1 237942707 237943099 - 5.69791223552 131 0.511089406803 -5.00410383121 10.7020160667 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;237942706;393;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237942707-237943099-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A237942707-237943099&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.752238553099 1.04091447778 0.999272988134 238106007 238106399 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;238106006;393;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237942707-237943099-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A238106007-238106399&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FICVLAETNQVPFDLTEGESELVSGFNIEYAAGSFALFFIAEYMNIIVINALTTTIFLGSLHTIYSPELYTINFITKTLILTALFL*I*IAYP*FHYDQLI*LL*KNSIPLTPAFCI*YTSIRILISRIPPQTYEICLTK Same 478237 chr1:237942707-237943099- 198 198 104 44 236 237940783 237943644 Best 302 302;662;735;826;878;1214;1221;3426 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:237940783-237943644&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.35368956743 0.376076555024 0.272019083969 0.1202 -3.28109694656 3.55311603053 0.063570806088 0.774670573849 20662 15205 15205;16524;19960;20662;24160;29790;35876;52414 41.0723396947 0.7091 7.1124351145 33.9599045802 1.05056392457 1.02376266007 316 Best 316 316;468;540;604;1096;1312;1906;1926 0.0 0.806097651295 chrM:3307-4262+ pseudogene mitochondrially encoded NADH dehydrogenase 2 (MT-ND2) pseudogene (ENSG00000283166) 303 505836 chr14:105852145-105852261- NoOverlap chr14 105852145 105852261 - 11.4801281294 39 0.745845731289 5.90004356855 5.58008456087 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105852144;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105852145-105852261-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105852145-105852261&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06945497456 1.04074024701 0.997505975599 106318477 106318593 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106318476;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105852145-105852261-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106318477-106318593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVSPAEGEVSADEEGFENLWATASTFIVLFLLSLFYSTTVTLFKVAR Same 507637 chr14:105852145-105852261- 259 259 44 0 63 105837465 105856215 70 70;297;303;618;1534;1768;2725;3071;4703;4966;9883;19584;21248 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105837465-105856215&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.598290598291 0.58064516129 23.1536230769 0.8193 8.09811538462 15.0555076923 1.02926857667 1.02770659703 488 171 171;488;606;760;1848;2075;2155;2623;3063;3220;4742;9758;24097 33.4362435897 0.5249 11.1870923077 22.2491512821 1.0727937945 1.04397027729 154 30 30;154;1395;1760;1980;1989;2291;2612;2659;3437;3454;6249;20954 0.0 0.0 ENST00000612473.1 NCintron coding exon(s) IGHM alternative final coding exons 304 577133 chr7:2388551-2388658+ NoOverlap chr7 2388551 2388658 + 15.5264694463 36 0.685356849182 4.3722944955 11.1541749508 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;2388550;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A2388551-2388658%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A2388551-2388658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04439062864 1.04073355839 1.02939132241 2428186 2428293 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;2428185;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A2388551-2388658%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A2428186-2428293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLQMVMLMDPSEDPEDVARTRRSRERTFIFDRVFGQHASQVSTCPCHPCVLLWGWSPLVR Same 578173 chr7:2388551-2388658+ 277 277 27 0 237 2384592 2388658 Best 304 304;675 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:2384592-2388658&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.917374517375 25.1302888889 0.8928 7.55454166667 17.5757472222 1.02943869889 1.01115623537 487 Best 487 487;848 32.7937 0.5046 8.74989166667 24.0438083333 1.06757837302 1.05051774094 178 Best 178 178;780 0.0 0.172485332722 chr17:74341876-74341986+ ENST00000443103.1 NC pseudogene unitary pseuodgene, KIF19 family member (ENSG00000230914) 305 502027 chr14:73616995-73617123+ NoOverlap chr14 73616995 73617123 + 12.3159302113 43 0.861480728388 1.04126275695 11.2746674543 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;73616994;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73616995-73617123%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A73616995-73617123&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04095986075 1.04071458822 0.97529877014 74083699 74083827 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;74083698;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73616995-73617123%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A74083699-74083827&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPFPGIIDLFGSSRGLCEYRASLLAGHGFAVLALAYFRFEDLPEDLNDVHLEYFEEAVDFMLQHPK Same 503929 chr14:73616995-73617123+ 261 261 44 0 238 73612572 73617174 Best 305 305;369;18695;18948;54211;63382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:73612572-73617174&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.558139534884 0.0998452012384 17.9471976744 0.9344 1.42686511628 16.5203325581 1.02753350812 0.971092305308 503 Best 503 503;685;4788;45597;60715;60824 53.0797581395 0.9127 4.85524883721 48.2245093023 0.986233928492 0.961044486564 1326 Best 1326 1326;1373;1540;31312;62655;73789 0.225745518141 chr14:73593702-73593904+ 0.352401525861 chr14:73573388-73573590+ ENST00000381139.1,ENST00000555011.2 UTR5,AntiNC pseudo-exon ACOT6 untranscribed pseudo-exon 306 527277 chr19:12688253-12688369+ NoOverlap chr19 12688253 12688369 + 10.666176927 39 0.753511237878 4.72823588435 5.93794104266 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12688252;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12688253-12688369%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12688253-12688369&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07079275798 1.04067174764 1.01618435671 12799067 12799183 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12799066;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12688253-12688369%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12799067-12799183&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPKMAADLLKFCTEQAKNDPFLVGIPAATNSFKEKKPYAIL Same 528723 chr19:12688253-12688369+ 256 256 50 0 239 12688049 12699291 Best 306 306;439;71391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12688049-12699291&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.581196581197 0.51724137931 18.5005589744 0.9701 8.37144358974 10.1291153846 1.053357622 1.04715715037 217 Best 217 217;404;15139 34.7610025641 0.7229 7.1606974359 27.6003051282 0.989859214355 1.04421430777 1282 371 371;1282;33773 0.0 0.252139077404 chr1:67705451-67705576- ENST00000587296.1 AntiNC protein-coding gene protein-coding gene ENSG00000283980 307 503034 chr14:103088100-103088216+ NoOverlap chr14 103088100 103088216 + 9.97733850529 39 0.638367832417 2.25462824109 7.7227102642 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;103088099;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A103088100-103088216%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A103088100-103088216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00636516905 1.0405445357 1.05443234833 103554437 103554553 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;103554436;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A103088100-103088216%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A103554437-103554553&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCPSSLQAVAGAWEKGPRLGQRLPSIVVEPSEADPVESGELRWPLESAQRGPSQSR None NA NA 0 240 103088100 103088216 Best 307 307 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:103088100-103088216&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.717948717949 0.417112299465 14.6722282051 0.8468 3.22652820513 11.4457 1.05035532918 1.05283885481 255 Best 255 255 17.6248538462 0.5768 0.968771794872 16.6560820513 1.04790515294 1.01557176136 361 Best 361 361 0.0 0.149709922285 chr2:30257433-30257621+ protein-coding gene protein-coding gene ENSG00000283071 308 603391 chr1:197442293-197442418+ Extension chr1 197442293 197442418 + 13.9393643027 42 0.77996563087 1.74363092085 12.1957333819 chr1:197442176-197442418+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;197442292;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A197442293-197442418%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A197442293-197442418&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03825643747 1.04040843085 0.972283552995 197411423 197411548 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;197411422;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A197442293-197442418%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A197411423-197411548&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CEVDVSSLSFYVSLLFWQNLFQLLSYLILRMNDEPVVEWGEQEDY* Same 604104 chr1:197442293-197442418+ 278 278 30 0 241 197442293 197442418 Best 308 308 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:197442293-197442418&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.404761904762 0.387692307692 21.6396952381 0.935 2.25327619048 19.3864190476 1.03096201296 0.955007737428 473 Best 473 473 41.8895261905 0.9569 6.90338095238 34.9861452381 0.960227020198 1.00281922635 1693 Best 1693 1693 0.0 0.0 ENST00000367399.6,ENST00000367397.1,ENST00000484075.5,ENST00000422250.1 ExtensionMid,UTR3,NC,AntiNC coding exon(s) CRB1 alternative final exon 309 560223 chr4:146222482-146222577+ NoOverlap chr4 146222482 146222577 + 9.75135944039 32 0.79435654612 -0.0492781354114 9.8006375758 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;146222481;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A146222482-146222577%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A146222482-146222577&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03366754154 1.04036748767 1.0361697571 147143634 147143729 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;147143633;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A146222482-146222577%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A147143634-147143729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LMTCFQEADAVTHSDKSLKRNLSFVWKAPAQPVGDIKFL Same 561214 chr4:146222482-146222577+ 274 274 35 0 242 146217013 146230318 Best 309 309;516;989;2305;2338 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:146217013-146230318&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5625 0.131687242798 12.066765625 0.9151 -0.96171875 13.028484375 1.00412311491 1.04667817683 700 664 664;700;2226;4904;5079 31.489909375 0.8309 8.287309375 23.2026 1.04216600346 1.04819925465 442 Best 442 442;762;1179;1402;2183 0.0 0.0 protein-coding gene protein-coding gene ENSG00000250673 310 573699 chr6:9673032-9673175- NoOverlap chr6 9673032 9673175 - 10.3379313101 48 0.971892881666 0.110979230143 10.22695208 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;9673031;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9673032-9673175-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A9673032-9673175&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0402961151 1.04017192971 0.980071809621 9673265 9673408 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;9673264;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9673032-9673175-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A9673265-9673408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHNDSWILDAFQRIHSEETKFFIPYDLEISNQELSYIVK*SEQWRGINGERRKVSWSEGALFFGLLK Same 574728 chr6:9673032-9673175- 329 329 -19 14 243 9673032 9673175 Best 310 310 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:9673032-9673175&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.395833333333 0.380952380952 13.9488708333 0.9651 -2.02843333333 15.9773041667 1.03127618351 0.953373036235 464 Best 464 464 36.1117916667 0.9202 -0.898297916667 37.0100895833 0.976740354545 0.969547419982 1483 Best 1483 1483 0.0 0.0 ENST00000492094.6 NC pseudogene extension OFCC1 extended pseudogene (ENSG00000181355) 311 578133 chr7:57167200-57167877+ NoOverlap chr7 57167200 57167877 + 6.94711946235 226 0.361912671132 -1.90187385154 8.84899331389 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57167199;678;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57167200-57167877%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57167200-57167877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.858991304314 1.03936323469 1.04294862643 57234907 57235584 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57234906;678;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57167200-57167877%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57234907-57235584&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MNENLLTSFTAPTILGLPAAALIILFLTTLLPISNYLINN*LISIQQSLVQLVLKQIIITHTIKG*T*SLILISLILFIALTNLLGLLPHSFTPTTQLSINLGITIPL*AGTVITAFHFKTKNSLAHFLPQGTPILLTPILVIIKTTSLLIQPMALAVHLTANITAGHLLIHLIGGATLVLSIINLPTASNTLIIRILLTTLEFAVALIQAYAFTLLVSLYLYDNT Same 579172 chr7:57167200-57167877+ 284 284 27 109 244 57167069 57169403 Best 311 311;1064;1719;18339;30405;36290 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57167069-57169403&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.389380530973 0.565042806273 10.5874969027 0.3365 -1.57411371681 12.1616106195 0.784580986602 1.05777544037 1729 1605 1605;1729;3056;18611;18962;23881 43.745270354 0.7692 -3.12354867257 46.8688190265 0.957100102335 1.00647096559 1739 484 484;596;1739;1843;2085;2580 0.835536073344 chrM:8527-9207+ 0.969771202868 chrM:8527-9207+ pseudogene MTCO3P10 mitochondrially encoded cytochrome c oxidase III pseudogene 10 (ENSG00000231537) 312 699903 chr4:71236472-71236576+ Extension chr4 71236472 71236576 + 7.36009423392 35 0.951938876718 -1.90615138326 9.26624561719 chr4:71236472-71236657+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;71236471;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A71236472-71236576%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A71236472-71236576&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.976904810746 1.03869075771 1.03637394606 72102189 72102293 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;72102188;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A71236472-71236576%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A72102189-72102293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LCPANMNNSLQVNLPRSWAAPSGSLQEKSEHSFFLFYYYR Same 700527 chr4:71236472-71236576+ 381 381 -69 0 245 71236180 71236576 Best 312 312;26785 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:71236180-71236576&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.457142857143 0.182291666667 8.89470285714 1.0 -2.45576285714 11.3504657143 0.996903777882 1.0659649605 771 Best 771 771;15976 23.0809714286 0.94 -1.62941714286 24.7103885714 1.00847167279 1.04943678474 971 Best 971 971;70936 0.0 0.0 ENST00000264485.9 Extension5p coding exon(s) SLC4A4 5' exons 313 643106 chr15:50500670-50500768- Extension chr15 50500670 50500768 - 13.8573848262 33 0.886032677427 7.65706066832 6.20032415787 chr15:50500670-50500837- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;50500669;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A50500670-50500768-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A50500670-50500768&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04947985214 1.03859507727 0.994043084258 50792867 50792965 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;50792866;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A50500670-50500768-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A50792867-50792965&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSFDNTRVSEIPDTSVQNAMDLLFYSCQPFSIPIQK Same 643743 chr15:50500670-50500768- 262 262 51 0 246 50500670 50500768 Best 313 313 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:50500670-50500768&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.414141414141 0.2475 19.2379212121 0.998 7.92700909091 11.3109121212 1.05637910884 1.05252187205 188 Best 188 188 33.0213121212 0.7559 5.77974242424 27.241569697 1.02466979214 1.05087892087 702 Best 702 702 0.0 0.100415383219 chr15:50498903-50499088+ ENST00000532404.5,ENST00000396444.7 Extension3p,AntiUTR3 pseudo-exon USP8 has a human-specific premature termination codon in the final coding exon, removing 30aa compared to other mammals 314 483409 chr11:5402904-5403029+ NoOverlap chr11 5402904 5403029 + 14.0934855768 42 0.938520310848 2.19611907467 11.8973665021 ENST00000332043.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;5402903;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A5402904-5403029%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A5402904-5403029&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03163096605 1.03850531014 0.97967250548 5424134 5424259 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;5424133;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A5402904-5403029%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A5424134-5424259&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVFFQMFSIHSLSMMEPAVLLAMSLDRFIAIYSPLSYTAILTLPRVFGTGAIIVLK Same 485341 chr11:5402904-5403029+ 283 283 31 0 4 5402904 5403164 4 4;314 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:5402904-5403164&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52380952381 0.121153846154 20.7818690476 0.9915 -1.04643095238 21.8283 1.03841351376 0.956814461223 380 120 120;380 62.6043238095 0.9735 -6.60029047619 69.2046142857 1.0113147617 1.01731601934 922 Best 922 922;2176 0.0584804227963 chr11:5440570-5441514- 0.26406446184 chr11:5820336-5821301+ ENST00000332043.1,ENST00000380252.5,ENST00000380237.5,ENST00000415970.5 CDS,AntiCDSintron,AntiUTR5intron,AntiNCintron pseudogene OR51J1 protein-coding gene switched to pseudogene (ENSG00000184321) 315 512654 chr16:85170596-85171795+ NoOverlap chr16 85170596 85171795 + 12.3886590242 400 0.793223582818 2.35844521455 10.0302138097 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;85170595;1200;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85170596-85171795%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A85170596-85171795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.993545543158 1.03835694308 1.04218376225 85204202 85205401 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;85204201;1200;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85170596-85171795%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A85204202-85205401&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALQDSRAAPAEGLCCYICGAPLSPASHHQVHVQKQEKLAQAPFFPFLWLHSPPPGAQPISEGGSTLVCASCFSSLTQQWQSFELANVPVLQRLYVVPLDSHAPGMASKGRRLPREEGLPSGALREACYLCGEDCTPDARAVPSRILNGNARSAMHFPFLSLLPCPPNAQGPNKRCEVRSCPKCFSVLEDVWALYRACQNEELITSVQGFLGRYHQAFSASDPALSELPASAQGGPVSICYICGAELGPGKEFQLNVNPASRLGEKEPFFPFLTVYPPAPRARPVDSTGLVATCVLCYHDLLAQWLQHEARSSHHAVSAWSRQYQVETFVCFFCQQEKKRCLGLKSVRVARLPLFLYTLRASHSLLVDDGQQLIIGACVECGTLVCAGQGLTRQGPMSWSSPVAAATK Same 514299 chr16:85170596-85171795+ 238 238 77 0 247 85169288 85171795 Best 315 315;1225;4037;33765;48559;52041;63398 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:85169288-85171795&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.674166666667 0.508943389268 23.96445375 0.9434 7.99284425 15.9716095 1.005470592 1.01774622334 686 Best 686 686;1182;1519;35870;37426;44051;65700 43.39120125 0.8614 9.0235805 34.36762075 0.987734139985 1.03208712194 1310 912 912;1310;2378;23905;34536;69575;73658 0.0 0.0263235680559 chr9:2717740-2719095+ ENST00000574293.1 NC coding exon(s) GSE1 5' extension 316 549546 chr22:21228804-21229136- NoOverlap chr22 21228804 21229136 - 9.34321713964 111 0.401602197299 3.91569642105 5.42752071859 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21228803;333;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21228804-21229136-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21228804-21229136&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.97002947652 1.0383438082 1.01256858074 21583093 21583425 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21583092;333;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21228804-21229136-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21583093-21583425&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFLSLVGVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYECHTPSTEK Same 550903 chr22:21228804-21229136- 493 493 -177 0 248 21228804 21229136 Best 316 316 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21228804-21229136&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.570570570571 0.556483957219 29.8674522523 0.9417 14.0465351351 15.8209171171 1.04449787507 1.03275989946 317 Best 317 317 59.9209810811 0.9171 19.5787522523 40.3422288288 1.01550516012 1.01732374733 841 Best 841 841 0.984650497252 chr1:116616080-116616457- 0.935125301089 chr1:116616080-116616457- ENST00000440315.3 AntiNCintron pseudogene immunoglobulin superfamily member 3 (IGSF3) pseudogene (ENSG00000283145) 317 516641 chr17:17138263-17138427+ NoOverlap chr17 17138263 17138427 + 10.2646818345 55 0.788799877928 4.45606728901 5.80861454552 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;17138262;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A17138263-17138427%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A17138263-17138427&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01985192331 1.0383411354 1.03148247332 17041577 17041741 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;17041576;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A17138263-17138427%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A17041577-17041741&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGSAFAFKASRQYATLADVPKAIRISHREAFQVERRRLERRTRARSPGREEVARLFGNER Same 518023 chr17:17138263-17138427+ 257 257 60 0 249 17138263 17138427 Best 317 317 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:17138263-17138427&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.642424242424 0.592672413793 10.7600618182 0.9792 1.80141454545 8.95864727273 1.03521282111 1.04993516763 414 Best 414 414 36.93732 0.894 7.99573818182 28.9415818182 0.963459200461 1.021018004 1658 Best 1658 1658 0.0 0.156480180612 chr22:37723185-37726503+ ENST00000584936.2,ENST00000341712.8 NC,CDSintron coding exon(s) MPRIP cassette exon 318 491110 chr12:40444389-40444547+ NoOverlap chr12 40444389 40444547 + 22.9583018546 53 0.827648771865 13.8834189885 9.07488286608 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40444388;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40444389-40444547%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40444389-40444547&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02130808273 1.03832522093 1.04033178792 40838191 40838349 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40838190;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40444389-40444547%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40838191-40838349&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VDPSAYHDVCIEEACACDMEGKYLGFCTAVAMYAEACSAVGVCVSWRKPNLCR Same 493087 chr12:40444389-40444547+ 242 242 76 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.51572327044 0.402277039848 39.6593037736 0.9824 24.0857433962 15.5735603774 1.01455039492 1.06204757058 619 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 77.2064245283 0.9847 34.7003018868 42.5061226415 0.990557037695 1.04906055681 1272 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.273884768262 chr11:1179092-1179248+ ENST00000454784.8 NC redundant PhyloCSF signals are accounted for elsewhere on the list 319 500669 chr14:21852906-21852983+ NoOverlap chr14 21852906 21852983 + 6.00612690816 26 0.846628049604 -6.68082323212 12.6869501403 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21852905;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21852906-21852983%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21852906-21852983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.668680205166 1.0381088764 0.954314345112 22321083 22321160 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22321082;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21852906-21852983%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22321083-22321160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFEAEFKRSQSSFNLRKPSVHWSDAAEYFCAVGATVPGSAGGAEHK None NA NA 0 130 21846938 21869364 157 157;319;1640;6119;15880;30074 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21846938-21869364&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.0 15.0024807692 0.8648 -9.70294615385 24.7054269231 0.937796729414 0.995872262506 1154 19 19;1154;2028;2765;4576;5725 19.9021307692 0.4788 -13.8053615385 33.7074923077 0.973257184316 0.969545107778 1536 746 746;1536;2871;3379;4344;4897 0.0 0.0 ENST00000390435.1 NC immunoglobulin segment overlaps an immunoglobulin region 320 510360 chr16:1432789-1432947+ NoOverlap chr16 1432789 1432947 + 8.42660566518 53 0.581485048318 1.66519043412 6.76141523106 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;1432788;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A1432789-1432947%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A1432789-1432947&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.95796177077 1.03795907948 1.04950946233 1482790 1482948 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;1482789;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A1432789-1432947%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A1482790-1482948&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEATEEAAPEGPGSPETPLQLLRFSELISDDIRRYFGRKDKGQDPDACDVYADSRPPR Same 512001 chr16:1432789-1432947+ 403 403 -83 0 250 1432591 1433358 Best 320 320;530;5454;34729 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:1432591-1433358&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.850267379679 19.3235509434 0.8046 2.29961886792 17.0239320755 1.04417431658 0.953849814378 321 Best 321 321;892;1694;3844 28.3593962264 0.74 -4.32345849057 32.682854717 0.953627128836 0.97497692685 1787 417 417;1698;1787;3365 0.0 0.0562633404018 chr19:1484027-1484127- protein-coding gene protein-coding gene ENSG00000284395 321 583098 chr7:151432147-151432281- NoOverlap chr7 151432147 151432281 - 12.3434711284 45 0.784694861948 1.48632444143 10.857146687 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;151432146;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A151432147-151432281-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A151432147-151432281&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03779389308 1.03737675484 0.980650950055 151129233 151129367 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;151129232;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A151432147-151432281-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A151129233-151129367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WVLYEEPNYHGRMYVVESGDFRSFSDWEAHSARVQSLHKVVNFFQPSPPTGMAGR Same 584025 chr7:151432147-151432281- 282 282 39 0 251 151432147 151432281 Best 321 321 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:151432147-151432281&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.622222222222 0.765306122449 8.51674 0.8382 -2.92268666667 11.4394266667 0.976123603557 1.05942638499 926 Best 926 926 35.2370444444 0.9388 -1.44986222222 36.6869066667 0.980846015346 0.971134001137 1406 Best 1406 1406 0.0 0.0 ENST00000478106.1,ENST00000337323.2,ENST00000491928.1,ENST00000462809.1,ENST00000465549.1 NC,CDSintron,UTR3intron,NCintron,AntiNCintron coding exon(s) CRYGN cassette exon 322 483239 chr11:1086730-1086876+ NoOverlap chr11 1086730 1086876 + 11.8694673764 49 0.679961011642 -0.751949053334 12.6214164297 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1086729;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1086730-1086876%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1086730-1086876&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05842650119 1.03651245041 0.932614689551 1084726 1084872 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1084725;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1086730-1086876%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1084726-1084872&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWVPSGSSPVLLSTCKRGRWVCTQAVCHGTCSIYGSGHYITFDGKYYDFDGHCSYVAVQVWSR Same 485169 chr11:1086730-1086876+ 319 319 3 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.578231292517 0.488372093023 24.6503122449 0.8885 3.54306938776 21.1072428571 1.03708981324 0.94946052697 397 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 43.2723959184 0.9576 -2.54275918367 45.815155102 0.978312186194 0.950244450207 1451 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0714904619425 chr11:1176928-1177066+ 0.294621722813 chr11:1176928-1177066+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 323 534959 chr2:126898979-126899080+ NoOverlap chr2 126898979 126899080 + 15.1884647476 34 0.767019868144 0.438744048424 14.7497206992 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;126898978;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A126898979-126899080%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A126898979-126899080&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0468705449 1.03595974982 0.991606200017 127656555 127656656 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;127656554;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A126898979-126899080%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A127656555-127656656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CWPELSALIDYDLQILWVTPGPPTELSQSIHSLFLEDNNFLKPWYLGEAQPGDQGLDVASLPDLGSYSLDFPLTCISSSDR Same 536312 chr2:126898979-126899080+ 301 301 22 0 15 126898979 126899581 15 15;323 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:126898979-126899581&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.519607843137 0.0 26.5842705882 0.8251 3.49104117647 23.0932294118 0.98528971984 0.98438113969 870 Best 870 870;2673 27.5391470588 0.2943 2.18346176471 25.3556852941 1.01288727994 1.05109165504 897 Best 897 897;3747 0.0 0.0 ENST00000437793.1 NC protein-coding gene protein-coding gene ENSG00000237524 324 588686 chr9:32552801-32552896+ NoOverlap chr9 32552801 32552896 + 11.935912542 32 0.81912527657 4.08198760822 7.85392493382 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;32552800;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A32552801-32552896%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A32552801-32552896&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05324117727 1.03591318344 1.05105933607 32552799 32552894 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;32552798;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A32552801-32552896%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A32552799-32552894&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLAIVLISWGCIIYASMVSARRQLRKKYPDK Same 589632 chr9:32552801-32552896+ 273 273 51 0 252 32552441 32552896 Best 324 324;3243;45084 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:32552441-32552896&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.46875 0.569169960474 20.615953125 0.9954 5.966925 14.649028125 1.04621513916 1.03891353509 300 Best 300 300;1307;57020 28.52858125 0.5477 2.78473125 25.74385 1.07721150965 1.05244917918 138 Best 138 138;2723;42711 0.0 0.0 ENST00000450093.1,ENST00000425533.1 NC,NCintron protein-coding gene protein-coding gene ENSG00000235453 325 569167 chr5:140570090-140570182- NoOverlap chr5 140570090 140570182 - 4.87658073056 31 0.912806503297 -6.41164517156 11.2882259021 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140570089;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140570090-140570182-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140570090-140570182&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.607709508812 1.03577460301 0.98097003319 139949675 139949767 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139949674;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140570090-140570182-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139949675-139949767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AWQGQWEEGAMTTEHHHCSLLAGTLEETINLATQNQELQAENQQLQQGAD Same 570180 chr5:140570090-140570182- 377 377 -52 0 157 140570090 140575575 188 188;325;1178;1912;10102;11098 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140570090-140575575&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.602150537634 0.11862244898 6.37212903226 0.9995 -12.5097419355 18.8818709677 1.0002792155 0.921784866283 737 143 143;737;966;1745;2012;3638 24.4034741935 0.8063 -16.6269290323 41.0304032258 1.04143623448 0.877892582053 458 94 94;445;458;3312;3430;3706 0.0 0.0801749829658 chr8:143922504-143925884- ENST00000507279.5 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 326 549348 chr22:50704964-50705104+ NoOverlap chr22 50704964 50705104 + 17.9877553037 47 0.737238344299 9.00959581771 8.97815948598 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50704963;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50704964-50705104%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50704964-50705104&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02972748451 1.03528476918 1.04189356645 51143392 51143532 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51143391;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50704964-50705104%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51143392-51143532&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALWWTCLGRPHPAACLSQVNGVNVVKVGHKQVVALIRQGGNRLVMKVVSVTRKPEEDGARRRGEGSR None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.617021276596 0.783333333333 30.0692595745 0.9765 15.3087787234 14.7604808511 1.04140376775 1.03552268361 348 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 64.8873148936 0.9742 26.9414723404 37.9458425532 0.988611928647 1.03263130946 1295 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.235459377401 chr19:50687923-50688058- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 327 583406 chr8:11808518-11808655+ NoOverlap chr8 11808518 11808655 + 7.88541525084 46 0.671754555316 0.43877395534 7.4466412955 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;11808517;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A11808518-11808655%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A11808518-11808655&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.957662132663 1.0350339948 1.05205858087 11666027 11666164 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;11666026;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A11808518-11808655%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A11666027-11666164&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSAGSAIPMAAAACGTKAMALFKRTLVLSPAAAPRGPGAGTAPRGCCLPPAAWPCK Same 584334 chr8:11808518-11808655+ 361 361 -34 0 253 11808518 11808793 Best 327 327;2369 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:11808518-11808793&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.775362318841 0.685106382979 11.821923913 0.8069 1.16182391304 10.6601 1.04337335936 1.05279710851 327 Best 327 327;2576 14.2862152174 0.5727 -1.57744130435 15.8636565217 1.00052228966 1.01867580282 1107 Best 1107 1107;3065 0.0 0.0 ENST00000525954.5,ENST00000220584.8,ENST00000528812.5,ENST00000446331.6 NC,CDSintron,UTR5intron,NCintron coding exon(s) FDFT1 alternative first coding exon 328 531730 chr19:48497464-48497889- NoOverlap chr19 48497464 48497889 - 8.21012678569 142 0.616781915265 2.64964004943 5.56048673626 ENST00000270238.3,ENST00000600059.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48497463;426;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48497464-48497889-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48497464-48497889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.975882322469 1.03496899646 1.01139397902 49000721 49001146 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49000720;426;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48497464-48497889-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49000721-49001146&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGLLPERRGDSPWPPWPSPQERDAGTRDREESPRDWGGAESPRGWEAGPREWGPSPSGHGDGPRRRPRKRRGRKGRMGRQHEAAATAATAATATGGTAEEAGASAPESQAGGGPRGRARGPRQQGRRRHGTQRRRGPPQAREEGPR Same 533205 chr19:48497464-48497889- 293 293 35 0 254 48469331 48498684 Best 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.765258215962 0.659392932649 11.6745633803 0.895 1.22878873239 10.4457746479 1.01383177125 1.04497726476 623 Best 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 7.73697605634 0.5696 -6.65887957746 14.3958556338 0.930606887747 1.01331522222 1938 Best 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.177422068123 chr17:81120201-81122823- ENST00000270238.3 CDS coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 329 561224 chr4:17876584-17876685- NoOverlap chr4 17876584 17876685 - 8.22740302454 34 0.907173984265 -0.0964617124375 8.32386473698 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17876583;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17876584-17876685-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17876584-17876685&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03300887498 1.03469064699 1.05429488999 17878207 17878308 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17878206;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17876584-17876685-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17878207-17878308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NDVSGLLSRTKRNIVPPGWYSVYVTNNYVFKKSPKAKKVSESTTK Same 562215 chr4:17876584-17876685- 306 306 23 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.323529411765 0.375 11.1073352941 0.9991 -1.95456764706 13.0619029412 1.05293175319 1.04266442337 221 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 21.1932117647 0.8374 -2.37888235294 23.5720941176 1.02373511927 1.05272941835 724 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 330 501842 chr14:66486676-66486807+ NoOverlap chr14 66486676 66486807 + 7.10079313637 44 0.944559118306 -0.735643064434 7.8364362008 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;66486675;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A66486676-66486807%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A66486676-66486807&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00824839281 1.03422882992 1.05165387572 66953394 66953525 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;66953393;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A66486676-66486807%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A66953394-66953525&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IDDNYLKELNEDLKLRKQELLEMLKPLEDKNNLLFQKLMSNLEEKQR Same 503742 chr14:66486676-66486807+ 358 358 -28 0 255 66486676 66492148 Best 330 330;1499;2685;2943;57197 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:66486676-66492148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.356060606061 0.0 8.18810227273 1.0 -2.39541136364 10.5835136364 1.00690168232 1.06946732418 675 Best 675 675;2288;2597;2857;39601 8.97989772727 0.3831 -2.29400681818 11.2739045455 0.673120180583 0.930492291385 2915 Best 2915 2915;4165;4450;4700;22191 0.0 0.0 ENST00000359454.10,ENST00000450299.6,ENST00000556361.1 NC,NCintron,AntiNCintron protein-coding gene protein-coding gene ENSG00000196553 331 585596 chr8:143790351-143790593+ NoOverlap chr8 143790351 143790593 + 9.22678885489 81 0.642934931575 0.327411100268 8.89937775462 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143790350;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143790351-143790593%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143790351-143790593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05878224149 1.03409232154 1.01945427738 144872521 144872763 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144872520;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143790351-143790593%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144872521-144872763&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YGKPLVFDLREEDLFPVVQRQLEAVQERYLSLLRPTDGPEYSPTQFQEQRLEHFRLFFVTKVQWPPAEQLQVLLPVRVQLPGTGL Same 586533 chr8:143790351-143790593+ 402 402 -71 0 75 143788915 143790593 85 85;88;331;613;845;2035;14755 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143788915-143790593&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.654320987654 0.655714285714 15.6885111111 0.8456 0.497966666667 15.1905444444 0.955965710766 0.998815326249 1056 92 92;111;801;1056;1111;2067;2390 19.0624444444 0.5105 -4.60420864198 23.6666530864 0.958823196707 1.05738777948 1717 116 116;127;431;967;1717;2161;3235 0.0 0.0842566949407 chr3:9754704-9754885+ ENST00000527139.5 NC protein-coding gene protein-coding gene ENSG00000203499 332 476797 chr10:14843595-14843891+ NoOverlap chr10 14843595 14843891 + 13.7044292231 99 0.919974599123 7.55476052653 6.14966869655 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;14843594;297;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14843595-14843891%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A14843595-14843891&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07401292193 1.03391826081 1.02971931581 14885594 14885890 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;14885593;297;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14843595-14843891%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A14885594-14885890&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGFVSGGDRPLTSEPPPRWARRRRRSVARTIAAELAENRRLARELSKREEEKLDRLIAIGEEASAQQDTANELRRDAVIAVRRLATAVEEATGAFQLGLEKLLQRLISNTKS Same 478691 chr10:14843595-14843891+ 322 322 10 0 39 14838293 14843891 43 43;332;2288;5649;18768 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:14838293-14843891&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.535353535354 0.534697217676 21.0169787879 0.9821 12.0581272727 8.95885151515 1.01127722252 1.01767219965 644 141 141;644;2902;7592;7784 24.7019828283 0.3769 14.1629676768 10.5390151515 0.921139902919 0.865104460404 2005 1661 1661;2005;4606;11944;25459 0.0 0.0 ENST00000437161.6,ENST00000378372.7 UTR3,CDSintron protein-coding gene protein-coding gene ENSG00000284024 333 590781 chr9:131554655-131555038+ NoOverlap chr9 131554655 131555038 + 7.25228518317 128 0.536498388266 1.72341637791 5.52886880527 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;131554654;384;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A131554655-131555038%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A131554655-131555038&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.910123483834 1.03378127992 1.01615973365 134430042 134430425 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;134430041;384;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A131554655-131555038%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A134430042-134430425&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAPSEDGAAGGSEPAPEDAPAQAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVVSGR Same 591734 chr9:131554655-131555038+ 263 263 70 0 82 131546695 131558199 95 95;333;354;38371;66990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:131546695-131558199&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.817708333333 0.987064676617 11.338246875 0.736 1.62678046875 9.71146640625 1.0558996952 1.03946290412 193 Best 193 193;548;718;6528;43932 13.1961382813 0.5173 -1.0901671875 14.2863054688 0.962098929568 0.978220339059 1673 819 819;1673;1875;4514;55696 0.0 0.0959345645775 chr2:217847510-217849087- protein-coding gene protein-coding gene ENSG00000283526 334 510488 chr16:3145936-3146025+ NoOverlap chr16 3145936 3146025 + 7.93649998307 30 0.87739375906 -2.36541343133 10.3019134144 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3145935;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3145936-3146025%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3145936-3146025&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.963873088697 1.03353707466 1.02200353407 3195937 3196026 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3195936;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3145936-3146025%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3195937-3196026&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PSLQPAPGPSTQYDLSKARAALLLAVIQGRPGAQHDVEALGGLCWALGFETTVR None NA NA 0 256 3144015 3150751 Best 334 334;814;1899;3328;3506;5705;11798;14824;15461;50287;55094 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3144015-3150751&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.3 14.9530833333 0.9811 -3.30912 18.2622033333 1.0589461893 0.965476903274 167 Best 167 167;1186;1262;1661;1809;1880;2134;2541;2601;5815;43459 13.1851133333 0.5157 -5.71092 18.8960333333 0.939298524985 1.04675277054 1889 Best 1889 1889;2882;2930;3314;3490;3499;6163;6623;16490;31726;59008 0.0 0.106567933556 chr16:2237218-2237301+ ENST00000428155.1,ENST00000575497.5 UTR5,NC pseudogene extension CASP16P pseudogene extended (ENSG00000228146) 335 595240 chrX:64405660-64406073+ NoOverlap chrX 64405660 64406073 + 6.48935000804 138 0.680580793757 -0.753744923118 7.24309493115 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;64405659;414;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A64405660-64406073%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A64405660-64406073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.92278622983 1.03315537906 1.06847547022 63625540 63625953 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;63625539;414;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A64405660-64406073%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A63625540-63625953&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IMQCIQDVSEEVWQECLTLFLLTGTCYDAVIITNSPPWLLASYSEGNLFQLTQEEIQILLAREGREKLFLQGVTLAGTKCLLI*DNLYTEGNNTMYLRTKGQSQGSRAVTVVQIESVRLVVIGQKGTEGGPLNLEAFEMAGYVREAIEQHVAHL Same 595882 chrX:64405660-64406073+ 211 211 124 61 257 64405660 64406073 Best 335 335 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:64405660-64406073&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.480676328502 0.211916461916 9.37054275362 0.8261 -0.916569565217 10.2871123188 1.00984700137 1.05766762146 656 Best 656 656 10.4971710145 0.3546 -3.30195144928 13.7991224638 0.756445961094 0.984633047514 2614 Best 2614 2614 0.0 0.0 pseudogene unitary pseudogene ENSG00000283349 336 560666 chr4:183797635-183798060+ NoOverlap chr4 183797635 183798060 + 7.78941830067 142 0.611056988148 2.14038240128 5.64903589939 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;183797634;426;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A183797635-183798060%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A183797635-183798060&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.964840834342 1.03288309141 1.01990747291 184718788 184719213 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;184718787;426;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A183797635-183798060%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A184718788-184719213&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WSCSHVPAAVPGSGGRRPR*ARSARQMPGKMEKFLQIAPHSLAIVLGPAEAPAGERPGAARPAPPAQPRQLARHHIGYEIFADFKAENMQHFWNKKVTAAVAETFFLGWIDEQVLLIQGKEEHLEALREGWTRRALRPPSGFHIRCLGECDR Same 561654 chr4:183797635-183798060+ 272 272 64 13 258 183797080 183798363 Best 336 336;22308;39732;60389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:183797080-183798363&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.701877934272 0.820698924731 9.47257042254 0.7534 0.0434732394366 9.4290971831 1.0248468429 1.05120127284 532 Best 532 532;13984;57259;61548 18.788015493 0.7767 -7.10869366197 25.8967091549 1.0277281342 1.06315371292 649 Best 649 649;14910;57149;60548 0.000615525751809 chr10:68827624-68827933+ 0.127953651747 chr10:68827624-68827933+ coding exon(s) STOX2 alternative first coding exon 337 532087 chr19:55464384-55464557- NoOverlap chr19 55464384 55464557 - 9.01975175173 58 0.529807446929 3.03982073788 5.97993101385 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;55464383;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A55464384-55464557-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A55464384-55464557&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.982214434057 1.03285581429 1.0392457955 55975751 55975924 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;55975750;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A55464384-55464557-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A55975751-55975924&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FGGCFGQQYCGELLQTTLAMHPGVPEGPGVSEPGPRELCAFVSGAAAHMLRALQPRRTRPPKRRPNHRRFLHNQICR Same 533565 chr19:55464384-55464557- 442 442 -105 0 259 55463745 55464557 Best 337 337;785 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:55463745-55464557&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.735632183908 0.558932542624 20.8012431034 0.9181 7.41274310345 13.3885 0.970544227584 1.00430651878 963 669 669;963 21.8615534483 0.4467 -0.169020689655 22.0305741379 1.1004466928 1.04284995453 50 Best 50 50;2380 0.0 0.124804285393 chr5:150647944-150650333+ protein-coding gene protein-coding gene ENSG00000283567 338 562332 chr4:106367043-106367153- NoOverlap chr4 106367043 106367153 - 6.10773791574 37 0.908871884015 -3.22709733852 9.33483525426 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;106367042;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A106367043-106367153-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A106367043-106367153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.888033686042 1.03247487768 1.0315020932 107288200 107288310 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;107288199;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A106367043-106367153-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A107288200-107288310&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EALAHHFGQGGLHLALLVQRADVPFCGQEVTDPVQMIQVILR Same 563327 chr4:106367043-106367153- 353 353 -15 0 260 106358309 106367411 Best 338 338;447;953 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:106358309-106367411&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.567567567568 0.11189516129 8.72537567568 1.0 -6.77416756757 15.4995432432 1.05737627249 0.979314958403 180 Best 180 180;1158;1221 18.3971864865 0.673 -8.3182027027 26.7153891892 1.0725933926 1.02888875168 157 Best 157 157;803;1966 0.0 0.0 ENST00000507153.1 NC protein-coding gene protein-coding gene ENSG00000250298 339 582683 chr7:135288238-135288396- NoOverlap chr7 135288238 135288396 - 11.2661622673 53 0.850309283099 3.70828869995 7.55787356732 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;135288237;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A135288238-135288396-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A135288238-135288396&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.996135974071 1.03235287917 1.04262091303 134972990 134973148 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;134972989;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A135288238-135288396-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A134972990-134973148&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPIPQGGTFAFVVISLAMLSLPSWNCPEWTLSASQVNTNFPEFTEKWQKRIQEVTEQGGWLGAGEVSATGTLSAFIHSTFIIQLPAR Same 583645 chr7:135288238-135288396- 268 268 71 0 261 135288238 135288396 Best 339 339 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:135288238-135288396&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.522012578616 0.0929824561404 19.7272339623 0.988 8.79190188679 10.9353320755 0.976047996008 1.03628553499 928 Best 928 928 51.4620132075 0.9316 15.4008150943 36.0611981132 0.96840847363 0.987304741553 1596 Best 1596 1596 0.0 0.0430624856955 chr5:139380798-139380886- redundant PhyloCSF signals are accounted for elsewhere on the list 340 472480 chr1:54136630-54136809- NoOverlap chr1 54136630 54136809 - 11.8458000322 60 0.677834744793 5.79408154674 6.05171848548 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;54136629;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A54136630-54136809-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A54136630-54136809&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02315365947 1.03229171433 1.03264459444 54602303 54602482 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;54602302;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A54136630-54136809-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A54602303-54602482&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPVVPMNVSCSRTDFQILISTQALAPLERTKVYLGSRSCAAQEVGGNLRIQARFDTCGTESQVGAGGR Same 474357 chr1:54136630-54136809- 305 305 35 0 158 54132971 54136809 189 189;340 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:54132971-54136809&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.650723025584 20.3029483333 0.9827 10.3989516667 9.90399666667 0.961393431056 1.02653304814 1026 41 41;1026 50.5703033333 0.9309 15.5103983333 35.059905 0.975458718623 0.980868017088 1504 377 377;1504 0.0 0.0 ENST00000530059.1 NC coding exon(s) CDCP2 alternative final coding exons 341 469306 chr1:228314813-228315088+ NoOverlap chr1 228314813 228315088 + 10.1369250511 92 0.838143905845 5.33642174328 4.80050330779 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;228314812;276;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A228314813-228315088%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A228314813-228315088&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04123073467 1.03219331017 1.00137609826 228502514 228502789 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;228502513;276;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A228314813-228315088%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A228502514-228502789&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWDGCGGSAPGADMCPACWPTDPVVEVVSAMQDLAVEEGGSAELLCQYSRPVQATWKMDEREVHTDGHRVIIEQDWNVARLTFRPALPCDSGIYSCEAAGTRVVALLQVQGEAAW Same 471184 chr1:228314813-228315088+ 354 354 -13 0 262 228313613 228315088 Best 341 341;534 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:228313613-228315088&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641304347826 0.54531085353 10.8282467391 0.9567 3.81377826087 7.01446847826 1.02867576588 1.00799905591 496 477 477;496 25.2898467391 0.9834 5.66768043478 19.6221663043 1.03963051811 1.02597367893 486 471 471;486 0.0 0.0182621624254 chr1:228216421-228216702+ ENST00000284548.15 CDSintron pseudo-exon OBSCN has two pseudo-exons 342 468140 chr1:180950339-180950530+ NoOverlap chr1 180950339 180950530 + 11.159448456 64 0.654421063172 2.93432502449 8.22512343153 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;180950338;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A180950339-180950530%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A180950339-180950530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0404244351 1.03184013687 1.02315967276 180919475 180919666 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;180919474;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A180950339-180950530%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A180919475-180919666&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FGCHCEILLFSSAGIYVQEMADMSMAKLYSGLLGVGDEILEVNGAKVAGLGLAHIKELLAHSESLSIRVLRQRPVPR Same 470007 chr1:180950339-180950530+ 337 337 5 0 263 180950339 180950530 Best 342 342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:180950339-180950530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.614583333333 0.345220257717 21.33481875 0.9358 7.0121359375 14.3226828125 0.944187008837 0.987482859914 1117 Best 1117 1117 47.1435296875 0.7644 9.4504078125 37.693121875 1.01223225728 0.971760935508 904 Best 904 904 0.0 0.0573560863657 chr19:13138147-13138406+ ENST00000367588.8,ENST00000461346.1,ENST00000415647.1,ENST00000358073.2 UTR3,NC,AntiNC,AntiNCintron coding exon(s) KIAA1614 3' coding exon 343 491094 chr12:40429537-40429677+ NoOverlap chr12 40429537 40429677 + 12.2394361217 47 0.862163307247 2.62859996202 9.6108361597 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40429536;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40429537-40429677%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40429537-40429677&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01582110448 1.03169247826 1.01063919514 40823339 40823479 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40823338;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40429537-40429677%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40823339-40823479&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PLHFNSTCQDAKWSCTEALCPGRCKVEGSSLTTFDGVKYNFPGNCHFLAVHVCNSLQYLSK Same 493071 chr12:40429537-40429677+ 296 296 47 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.475177304965 0.251336898396 17.8981212766 0.9825 4.45393191489 13.4441893617 0.999403087095 1.01801005831 744 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 26.1859553191 0.6492 0.505123404255 25.6808319149 1.02830512046 1.03528023476 644 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.144707414729 chr11:1165622-1165760+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 344 572523 chr6:109284468-109284560+ NoOverlap chr6 109284468 109284560 + 12.4799935722 31 0.886024458735 2.81457417627 9.66541939589 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109284467;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109284468-109284560%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109284468-109284560&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04736048617 1.03123706676 1.04891476884 109605671 109605763 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109605670;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109284468-109284560%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109605671-109605763&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSHLPSCCNAQYTPCLSDPCPYTSCLGLPCFCSLVGAPEAFVSIQLEKVGLRDMMLNTFLLRKQTMADR Same 573550 chr6:109284468-109284560+ 300 300 44 0 180 109284468 109286489 218 218;344;3815 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109284468-109286489&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.537634408602 0.149038461538 17.1168354839 0.9998 3.2330483871 13.8837870968 1.06104854071 1.0430382648 140 Best 140 140;539;1469 25.4237806452 0.5842 4.48423870968 20.9395419355 1.09345564351 1.03951844501 71 Best 71 71;275;2829 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 345 588543 chr9:18163865-18163978+ NoOverlap chr9 18163865 18163978 + 6.56795523747 38 0.892794930792 -2.0664999783 8.63445521577 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;18163864;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A18163865-18163978%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A18163865-18163978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.949413918395 1.03105251798 1.04653898265 18163863 18163976 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;18163862;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A18163865-18163978%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A18163863-18163976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VCGDQSQGAVFLREFTLIRRESLHEDFLSDLLNSHKTEDSVQCR Same 589489 chr9:18163865-18163978+ 320 320 25 0 264 18163865 18163978 Best 345 345 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:18163865-18163978&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.473684210526 0.46978021978 10.9789078947 0.9583 -0.513278947368 11.4921868421 1.03611996544 1.05669735365 405 Best 405 405 20.9253842105 0.6386 -0.556636842105 21.4820210526 1.08887203079 1.04970251645 83 Best 83 83 0.0 0.0 coding exon(s) ADAMTSL1 5' coding exons 346 477001 chr10:24042285-24042380+ NoOverlap chr10 24042285 24042380 + 10.500587536 32 0.936835755703 2.65484381514 7.84574372089 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;24042284;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24042285-24042380%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A24042285-24042380&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05474006474 1.03054094042 1.05342526023 24331214 24331309 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;24331213;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24042285-24042380%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A24331214-24331309&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MSKPSRLARPFFSNAASKLPSARRDDLNSKQK Same 478896 chr10:24042285-24042380+ 314 314 32 0 265 24042285 24042500 Best 346 346;859 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:24042285-24042500&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.46875 0.388663967611 13.687678125 0.9994 2.26771875 11.419959375 1.05909948348 1.05737497357 161 Best 161 161;770 25.482425 0.7107 1.86655 23.615875 1.07117354131 1.05242809125 165 Best 165 165;2186 0.0 0.0 ENST00000376462.5 UTR5intron coding exon(s) KIAA1217 alternative first coding exon 347 675916 chr2:200764620-200764715+ Extension chr2 200764620 200764715 + 11.1458282704 32 0.877326523995 4.2828655988 6.86296267156 chr2:200764620-200764724+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;200764619;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A200764620-200764715%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A200764620-200764715&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06115636241 1.03036977659 1.03017726855 201629343 201629438 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;201629342;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A200764620-200764715%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A201629343-201629438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HIYRYVDKTIYKQAFNPETLIRCWNECLDKSSFHSR Same 676504 chr2:200764620-200764715+ 289 289 58 0 266 200764538 200764715 Best 347 347;19906 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:200764538-200764715&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.385416666667 0.0 16.164146875 0.9027 4.4294125 11.734734375 1.0193300847 1.05611977291 579 Best 579 579;7768 36.769696875 0.7905 -2.484134375 39.25383125 1.0242186311 0.979497586941 713 Best 713 713;5118 0.0 0.242823443026 chr2:200650974-200651201+ ENST00000467645.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 348 502281 chr14:78243088-78243801+ NoOverlap chr14 78243088 78243801 + 17.0901727217 238 0.948768026322 8.81476640942 8.27540631226 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;78243087;714;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A78243088-78243801%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A78243088-78243801&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.946906411744 1.0303632285 1.01326642051 78709431 78710144 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;78709430;714;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A78243088-78243801%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A78709431-78710144&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEILSGLFPGLSAPPGSVPAATMSSTLHSVFFTLKVSILLGSLLGLCLGLEFMGLPNQWARYLRWDASTRSDLSFQFKTNVSTGLLLYLDDGGVCDFLCLSLVDGRVQLRFSMDCAETAVLSNKQVNDSSWHFLMVSRDRLRTVLMLDGEGQSGELQPQRPYMDVVSDLFLGGVPTDIRPSALTLDGVQAMPGFKGLILDLKYGNSEPRLLGSRGVQMDAEGPCGERPCENGGICFLLDGHPTCDCSTTGYGGKLCSEGK None NA NA 0 267 78243088 78243801 Best 348 348 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:78243088-78243801&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.602240896359 0.447949117342 22.4331231092 0.9937 11.4274197479 11.0057033613 1.02493902071 0.992626111536 529 Best 529 529 50.3041848739 0.9813 19.8798462185 30.4243386555 0.994875469961 0.971093994635 1195 Best 1195 1195 0.0 0.206152234936 chr11:64712970-64713699- ENST00000554738.5 NC coding exon(s) NRXN3 cassette exon 349 540178 chr2:132673030-132673137- NoOverlap chr2 132673030 132673137 - 9.48476663397 36 0.909386841637 3.50007219613 5.98469443785 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;132673029;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A132673030-132673137-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A132673030-132673137&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07916088094 1.03023779807 1.01101181592 133430603 133430710 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;133430602;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A132673030-132673137-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A133430603-133430710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NEETSLSSSDRPGVDNLESLSDSLYDSFSSCASQGSNDV Same 541540 chr2:132673030-132673137- 307 307 42 0 268 132668677 132673137 Best 349 349;4819;25599;29906;42467 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:132668677-132673137&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.407407407407 0.0 14.5412444444 0.989 5.55094166667 8.99030277778 1.06388549692 1.03043185947 117 Best 117 117;11448;18835;33618;70710 28.2018777778 0.7225 12.5046444444 15.6972333333 1.06693966325 0.972278466559 183 Best 183 183;28002;37490;38224;49163 0.0 0.0 ENST00000317721.10 UTR3 coding exon(s) NCKAP5 alternative final exon 350 491091 chr12:40426521-40426616+ NoOverlap chr12 40426521 40426616 + 17.9812124968 32 0.89039921416 6.45959372818 11.5216187686 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40426520;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40426521-40426616%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40426521-40426616&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04344504887 1.03002557855 1.0452431723 40820323 40820418 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40820322;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40426521-40426616%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40820323-40820418&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSTCDTYSELSRLCASDGPGTFESWRSDSDVVCGR Same 493068 chr12:40426521-40426616+ 325 325 25 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.520833333333 0.618357487923 29.170246875 0.9717 10.341525 18.828721875 1.04856836944 1.03534703316 277 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 31.04430625 0.4309 7.481165625 23.563140625 1.05445279114 1.04993140321 271 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 351 474648 chr1:160722616-160722732- NoOverlap chr1 160722616 160722732 - 6.13530510282 39 0.541103305535 -8.88303836874 15.0183434716 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;160722615;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160722616-160722732-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A160722616-160722732&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.501273275582 1.02989191772 0.907965799919 160692406 160692522 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;160692405;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160722616-160722732-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A160692406-160692522&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSLSAFSLGLGANLQGLVPNAIWQTNVTQYPPFRCFKFLHVTVNSYMGLIHGIPQT Same 476527 chr1:160722616-160722732- 368 368 -17 0 269 160722501 160723005 Best 351 351;4927;5285 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:160722501-160723005&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.384615384615 0.240740740741 -0.193748717949 0.1191 -4.70527179487 4.51152307692 0.0296019741404 0.808847279582 28849 27510 27510;28849;29211 9.98112564103 0.1981 -16.0739076923 26.0550333333 0.859917979924 1.04147839657 2277 Best 2277 2277;3124;3495 0.0 0.0 not annotated putative regulatory region 352 475486 chr1:204251534-204251641- NoOverlap chr1 204251534 204251641 - 8.26209163003 36 0.930893585277 0.729363833865 7.53272779617 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204251533;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204251534-204251641-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204251534-204251641&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0456069417 1.02968046664 1.05415593061 204220662 204220769 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204220661;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204251534-204251641-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204220662-204220769&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVNSPFLPLLQMSESETLISMVNRMVENSSPRSQLFMQVRPLPGSMVPANAISAACAWSSCPSR Same 477371 chr1:204251534-204251641- 345 345 7 0 270 204243114 204256899 Best 352 352;616;2254;47266 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204243114-204256899&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.401985111663 7.36628055556 0.9878 -0.575844444444 7.942125 0.8480832103 1.02275634212 1477 1246 1246;1477;3678;32366 13.2291055556 0.7092 -3.81510555556 17.0442111111 0.92464502047 1.03121602471 1979 451 451;1562;1979;31464 0.0 0.0 ENST00000272203.7 CDSintron coding exon(s) PLEKHA6 4 cassette exons 353 503795 chr14:34982422-34982517- NoOverlap chr14 34982422 34982517 - 15.3173907548 32 0.824411573968 4.17083119787 11.1465595569 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;34982421;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34982422-34982517-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A34982422-34982517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04148672296 1.02964885075 1.03745425734 35451628 35451723 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;35451627;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34982422-34982517-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A35451628-35451723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPTARQAVMLRPLRTVAPADRQALLQWMRTNRKCK Same 505638 chr14:34982422-34982517- 339 339 14 0 271 34982422 34982517 Best 353 353 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:34982422-34982517&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.625 0.964285714286 19.600353125 0.951 6.236665625 13.3636875 1.03670111898 1.05008791673 400 Best 400 400 22.770771875 0.335 7.602259375 15.1685125 0.94225418587 0.962311179925 1866 Best 1866 1866 0.0 0.0 ENST00000556705.5,ENST00000556994.5 NC,AntiUTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 354 590783 chr9:131558047-131558199+ NoOverlap chr9 131558047 131558199 + 18.7298529277 51 0.858889951036 7.04581380592 11.6840391217 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;131558046;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A131558047-131558199%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A131558047-131558199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01459132821 1.02964769445 0.994258454517 134433434 134433586 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;134433433;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A131558047-131558199%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A134433434-134433586&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PSIALGGSGGSLFAPTAPSCPVSLQARAALGRGDLAQAEEASRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP Same 591736 chr9:131558047-131558199+ 317 317 37 0 82 131546695 131558199 95 95;333;354;38371;66990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:131546695-131558199&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.660130718954 0.480376766091 28.051127451 0.9566 12.612654902 15.438472549 1.02322196612 1.00788365292 548 193 193;548;718;6528;43932 50.5733647059 0.7318 13.3124294118 37.2609352941 1.01696367245 0.983456031399 819 Best 819 819;1673;1875;4514;55696 0.0 0.0836051096147 chr6:32149222-32149398- protein-coding gene protein-coding gene ENSG00000283526 355 491092 chr12:40427385-40427504+ NoOverlap chr12 40427385 40427504 + 8.46619490385 40 0.832273975738 2.21082747132 6.25536743253 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40427384;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40427385-40427504%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40427385-40427504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06541520384 1.02921517529 1.03271076967 40821187 40821306 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40821186;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40427385-40427504%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40821187-40821306&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPEQHIYKECGPSNPATCSNVAPFQDSECVSGCTCPEGSTPMR Same 493069 chr12:40427385-40427504+ 288 288 67 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.475 0.14888337469 12.9808125 0.9686 4.7098025 8.27101 1.04624654395 1.0212383248 299 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 16.0280025 0.4688 2.7566525 13.27135 0.955617769489 0.956198382574 1753 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0893649323897 chr11:1229170-1229295+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 356 551744 chr3:29182956-29183132+ NoOverlap chr3 29182956 29183132 + 9.38466266303 59 0.852364049227 2.59010335841 6.79455930462 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;29182955;177;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A29182956-29183132%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A29182956-29183132&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00930294946 1.02895253589 1.04670037852 29224447 29224623 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;29224446;177;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A29182956-29183132%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A29224447-29224623&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSSTVRAYQTSKSRVTMSPGFSSQWNSSQPAWNTYSFPRASLHYQSHASYTYCTGHPAVSTLFFCILK Same 552681 chr3:29182956-29183132+ 280 280 76 0 272 29182956 29183132 Best 356 356 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:29182956-29183132&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.531073446328 0.0857142857143 14.0390186441 1.0 1.85527627119 12.1837423729 0.992864482385 1.02097288155 803 Best 803 803 21.7766559322 0.6571 2.79569152542 18.9809644068 1.03501637582 1.03469338915 559 Best 559 559 0.0 0.0 coding exon(s) RBMS3 3 5' coding exons 357 483257 chr11:1103780-1103899+ NoOverlap chr11 1103780 1103899 + 9.70575999469 40 0.597919050889 2.09259257615 7.61316741854 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1103779;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1103780-1103899%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1103780-1103899&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.964059905517 1.02888747603 1.05391772299 1097688 1097807 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1097687;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1103780-1103899%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1097688-1097807&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AYPVCNVASLTDTGTCTNTTSDDCILPSGEIVSNCEAAADQWLVNDPSKPHCPHSSSTTK Same 485187 chr11:1103780-1103899+ 429 429 -72 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.65 0.494166094715 24.014715 0.89 6.08463 17.930085 1.03388158189 0.987374633102 431 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 40.9235275 0.9264 -3.8329425 44.75647 0.988665391689 0.950074792037 1294 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0490604378619 chr11:1195012-1195279+ 0.188238887721 chr11:1195012-1195279+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 358 583737 chr8:26514326-26514682+ NoOverlap chr8 26514326 26514682 + 9.17561678977 119 0.680063574984 4.96399244691 4.21162434285 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;26514325;357;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A26514326-26514682%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A26514326-26514682&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01392402165 1.02887486994 0.942811045418 26371842 26372198 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;26371841;357;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A26514326-26514682%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A26371842-26372198&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMAERKQSGKAAEDEEVPAFFKNLGSGSPKPRQKFCGMFCPVEGSSENKTIDFDSLSVGRGSGQVVAQQRDVAHLGPDPQPPYSRQGRRAGGEPSVESGRKVEIRRASGKEALQNINDQVGVGVGGGDGGR Same 584667 chr8:26514326-26514682+ 205 205 153 0 273 26514326 26514682 Best 358 358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:26514326-26514682&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.655462184874 0.86976744186 12.3083462185 0.9681 5.88414621849 6.4242 1.04677681071 0.955208012904 292 Best 292 292 29.1533537815 0.8751 8.61089411765 20.5424596639 1.03686722954 0.990182255867 524 Best 524 524 0.0 0.199059732482 chr5:147509478-147509858- ENST00000521913.5 UTR5 coding exon(s) DPYSL2 first coding exon 359 595546 chrX:119574523-119574666+ NoOverlap chrX 119574523 119574666 + 14.790970703 48 0.887586467791 7.32058536634 7.47038533663 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;119574522;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A119574523-119574666%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A119574523-119574666&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.990727797786 1.02887462152 1.04539815974 118708486 118708629 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;118708485;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A119574523-119574666%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A118708486-118708629&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGTACPALDVPPPSLCSQVGSAPVYTGVVLSRRQTDPRLRRGSAVPLGASASPSPASPASSASSPAAGTR Same 596188 chrX:119574523-119574666+ 310 310 49 0 274 119574523 119574809 Best 359 359;9007 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:119574523-119574809&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.694444444444 0.84 20.7127416667 0.883 11.8895854167 8.82315625 1.05046958515 1.02486959578 254 Best 254 254;13630 18.3641625 0.4729 6.98288541667 11.3812770833 0.986401566249 0.914965279799 1324 Best 1324 1324;15043 0.0 0.0 ENST00000371558.6,ENST00000625379.1 UTR5,NC under investigation UBE2A potential non-ATG start 360 530993 chr19:35898722-35898823- NoOverlap chr19 35898722 35898823 - 16.7008618046 34 0.752914248785 10.1134264206 6.58743538401 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35898721;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35898722-35898823-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35898722-35898823&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04450591821 1.02840592762 0.99875385302 36389624 36389725 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36389623;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35898722-35898823-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36389624-36389725&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TVSRGERSHCPTQTVKKLLEEQRRRQQQQPDAGGVQVRPGSHSSPEAPCCPVGTQR Same 532460 chr19:35898722-35898823- 335 335 25 0 275 35897702 35900539 Best 360 360;1428;9480;10866 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35897702-35900539&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.676470588235 0.697435897436 28.4708705882 0.9674 16.6027382353 11.8681323529 1.04674829661 1.03571549969 295 Best 295 295;1255;2053;19414 30.2934529412 0.4714 12.8822058824 17.4112470588 1.09450258044 0.994341741399 65 Best 65 65;3028;5032;47030 0.0 0.128373442413 chr8:22138350-22138552- ENST00000396901.5,ENST00000585544.1 UTR5,NC coding exon(s) NFKBID 5' extension 361 588150 chr8:143737617-143737913- NoOverlap chr8 143737617 143737913 - 6.87181507202 99 0.702643432879 0.628102992878 6.24371207914 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143737616;297;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143737617-143737913-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143737617-143737913&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.997630730102 1.02827738286 1.04729292001 144819787 144820083 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144819786;297;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143737617-143737913-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144819787-144820083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VARPEQPQAASRPVPATAPGSELVLVLAGHMEGCGAGDPMPALGPELLRLHEVQLCLAQEQLLLEDRWRQVQLQMQLWREEQLWLQQLQEEQLWLQQLQEEQAWVHVEGLQLAVALEQLRSEGFEALQTQGQVRPGWGGGRGPGLLCWCGGHCSNLGMPVEAQEAR Same 589095 chr8:143737617-143737913- 269 269 92 0 276 143733703 143738234 Best 361 361;376;47468;58180;61062 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143733703-143738234&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.676767676768 0.281368421053 8.45278484848 0.8859 -0.724057575758 9.17684242424 0.990838069205 1.05723951204 828 308 308;828;30909;52884;63830 2.89391515152 0.4188 -7.83769191919 10.7316070707 0.514971615267 0.92988363371 3471 720 720;3471;45407;48220;48572 0.0 0.023122825699 chr1:16939894-16940093+ ENST00000533004.5 AntiNCintron coding exon(s) FAM83H 5' coding extension. 362 588885 chr9:35841137-35841274+ NoOverlap chr9 35841137 35841274 + 15.3348389346 46 0.835187304494 2.69077613755 12.644062797 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35841136;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35841137-35841274%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35841137-35841274&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00628960655 1.02770768077 0.965473162865 35841134 35841271 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35841133;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35841137-35841274%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35841134-35841271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGFSPARPAGSVCLGLVTPLLSLPLLPPLLLSQGLQDECQYLLQPQLIVRRLLDVAVLVPGRPSEQTLSPHNRSALYK*VK Same 589829 chr9:35841137-35841274+ 333 333 29 1 277 35829249 35842438 Best 362 362;425;536;1007;2241;12378;33483;41023;50301;66958 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35829249-35842438&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.594202898551 0.591911764706 23.9415586957 0.9991 5.71509782609 18.2264608696 0.991945859161 0.966348567271 815 527 527;571;572;815;1277;3226;54814;57000;63888;72554 52.2849608696 0.8957 6.5827673913 45.7021934783 0.99194854017 0.959072920925 1241 753 753;986;1017;1241;1441;19083;51774;53783;58586;72919 0.0 0.197229694511 chr16:377037-377164- ENST00000377988.6,ENST00000464519.6,ENST00000473947.1 UTR5,NC,NCintron coding exon(s) TMEM8B 5' extension by 5 exons 363 480051 chr10:14008063-14008155- NoOverlap chr10 14008063 14008155 - 13.2566355313 31 0.863182687409 3.5206483397 9.7359871916 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;14008062;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14008063-14008155-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A14008063-14008155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04301038485 1.02753928448 1.04930370217 14050062 14050154 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;14050061;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14008063-14008155-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A14050062-14050154&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIFEGGSFSPFAGNTHTHTHTHTHTHTHTQLYTMVVQAAVAPNRSQRLLLKIPYGSLRRRSVER Same 481959 chr10:14008063-14008155- 321 321 42 0 278 14008063 14008155 Best 363 363 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:14008063-14008155&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.47311827957 0.58125 19.2576322581 0.9903 4.58561290323 14.6720193548 1.0502037825 1.03701106996 258 Best 258 258 34.4846677419 0.8337 8.6891516129 25.795516129 1.02416416668 1.05311894137 717 Best 717 717 0.0 0.0 ENST00000342409.3,ENST00000357447.6 NC,CDSintron coding exon(s) FRMD4A first coding exon 364 492301 chr12:64541580-64541660+ NoOverlap chr12 64541580 64541660 + 6.89924078297 27 0.81033261842 -5.70554818158 12.6047889645 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;64541579;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A64541580-64541660%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A64541580-64541660&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.780628253247 1.02741229364 0.957132529526 64935360 64935440 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;64935359;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A64541580-64541660%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A64935360-64935440&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HRPNWEPNVLSLSEGKYICHAHCRDLVHLDYPQNGNVSSCMPTSEVR Same 494283 chr12:64541580-64541660+ 302 302 62 0 279 64533268 64541660 Best 364 364;1050 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:64533268-64541660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.501547987616 11.9292444444 0.9588 -5.77233333333 17.7015777778 1.0048945056 0.970025576525 693 Best 693 693;1209 13.6081259259 0.3962 -6.51007777778 20.1182037037 0.856025372926 1.05308927102 2290 Best 2290 2290;2957 0.0 0.0 coding exon(s) RASSF3 5' extension by 3 exons 365 575317 chr6:56540841-56541572- NoOverlap chr6 56540841 56541572 - 14.3031192774 244 0.917044077311 5.33730123812 8.96581803928 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;56540840;732;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A56540841-56541572-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A56540841-56541572&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.949980437398 1.02718197866 1.04562342478 56405639 56406370 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;56405638;732;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A56540841-56541572-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A56405639-56406370&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MGKPLSRPDCLRQNPPCVGKGEEEEDLNIEDCYVPQRSIYDTVRLNEQIDSGSKGSLSSRHFTDRTLPYSHRTLDVSSLCSNGALTSSSVFELRGREANKLDEKMIFDALKLNSDIIRTTGLPKAKSHAEKKEHRRSWRMFVPANFMDYANKSESSFVEPADMSDAVTKASKCRWGTNSLTSEEDDSGLCSPPAEREEKQGILTGDQSRIKSLSSTEDILVTDQYRPFFSVNSISEQKIPLLSCQSAHPDENFK None NA NA 0 280 56540841 56541572 Best 365 365 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:56540841-56541572&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.420765027322 0.433007985803 18.8007405738 0.9801 7.3411045082 11.4596360656 1.02675216211 1.00677380928 507 Best 507 507 40.4945438525 0.8921 13.1708127049 27.3237311475 0.999714641373 0.967123954248 1115 Best 1115 1115 0.0 0.143515051405 chr1:39410266-39414549+ ENST00000244364.10,ENST00000524186.1 CDSintron,NCintron coding exon(s) DST cassette exon 366 499775 chr13:51087929-51088078- NoOverlap chr13 51087929 51088078 - 15.6620700788 50 0.899542229343 9.627286053 6.03478402585 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51087928;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51087929-51088078-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51087929-51088078&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.985280626871 1.02716786798 1.02195708749 51662065 51662214 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;51662064;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51087929-51088078-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A51662065-51662214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSGLLAQATLSSPLHLLQKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDGECQEGSGK Same 501782 chr13:51087929-51088078- 326 326 40 0 114 51084157 51088078 136 136;145;366;1264;1713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51084157-51088078&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.375 28.46844 0.9918 17.859232 10.609208 1.01663152558 1.03579421399 600 291 291;534;600;1000;1249 31.759142 0.6534 14.522178 17.236964 1.04471132315 1.00360441678 408 Best 408 408;1257;1688;3102;3151 0.0 0.0 ENST00000433280.6 NC protein-coding gene protein-coding gene ENSG00000226792 367 583398 chr8:11365582-11365716+ NoOverlap chr8 11365582 11365716 + 14.7635043648 45 0.943383603333 4.370764535 10.3927398298 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;11365581;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A11365582-11365716%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A11365582-11365716&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01510029398 1.02703680134 1.00899366934 11223091 11223225 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;11223090;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A11365582-11365716%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A11223091-11223225&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASLAYLFLADGWPMNFDDSNARKDWGWKHDFDLPELVTAMLNFHGSESRVAQAN Same 584326 chr8:11365582-11365716+ 328 328 39 0 281 11362895 11365716 Best 367 367;698;800 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:11362895-11365716&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.459183673469 18.88784 0.8877 3.27551111111 15.6123288889 1.03266933703 0.985995677741 452 Best 452 452;906;950 52.4853933333 0.961 15.4883355556 36.9970577778 0.957716021931 1.0028577039 1732 1182 1182;1297;1732 0.0 0.0 ENST00000525246.5 NC pseudogene extension TDH pseudogene extended by 2 exons (ENSG00000154316) 368 504649 chr14:73718846-73719007- NoOverlap chr14 73718846 73719007 - 18.6547852167 54 0.858347391414 5.84260190527 12.8121833114 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;73718845;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73718846-73719007-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A73718846-73719007&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00146169532 1.02680647565 0.969359685007 74185549 74185710 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;74185548;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73718846-73719007-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A74185549-74185710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFYKVKSRSAHMKSHAEQEKKAAALRLKEKEAAAAAAAAHQQALREESGAGDKG Same 506494 chr14:73718846-73719007- 332 332 36 0 282 73718846 73719007 Best 368 368 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:73718846-73719007&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.66049382716 0.765261627907 28.2058333333 0.9289 9.54261666667 18.6632166667 1.03205183298 0.962435432617 458 Best 458 458 48.1378166667 0.8274 17.0309611111 31.1068555556 0.954800718738 1.00854125339 1763 Best 1763 1763 0.0 0.0 ENST00000286523.9,ENST00000476562.5 UTR3,NC coding exon(s) ELMSAN1 final coding exon 369 502024 chr14:73612614-73613027+ NoOverlap chr14 73612614 73613027 + 7.80758256282 138 0.732123558271 1.36428046961 6.44330209321 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;73612613;414;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73612614-73613027%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A73612614-73613027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.96747575221 1.02665996884 1.04069752378 74079318 74079731 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;74079317;414;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73612614-73613027%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A74079318-74079731&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CCWDEPLRIAVRGLAPEQPVTLRTSLRDEEGALFRAHARYRADARDELDLERAPALGGSFAGLQPMGLLWALEPEKALVRLVKRDVRTPFAVELEVLDGHDTEPGRLLCLAQNKRDFLRPGVRREPVRAGPVRAALFLPPDE Same 503926 chr14:73612614-73613027+ 253 253 116 0 238 73612572 73617174 305 305;369;18695;18948;54211;63382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:73612572-73617174&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.756038647343 1.11891891892 8.58945507246 0.9021 -2.08061449275 10.6700695652 1.0056099995 1.06507594496 685 503 503;685;4788;45597;60715;60824 37.2170978261 0.8715 -1.94333188406 39.1604297101 0.98315946747 0.991614590229 1373 1326 1326;1373;1540;31312;62655;73789 0.454913287039 chr14:73591960-73592416+ 0.461971371316 chr14:73591960-73592416+ ENST00000554229.1 UTR5intron pseudo-exon ACOT6 untranscribed pseudo-exon 370 463041 chr1:6456072-6456191+ NoOverlap chr1 6456072 6456191 + 11.1513074607 40 0.677750438697 5.34915251955 5.80215494111 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;6456071;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6456072-6456191%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A6456072-6456191&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06155846137 1.02657117983 1.01204971705 6516132 6516251 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;6516131;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6456072-6456191%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A6516132-6516251&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TEEAAPFQTGDPPEGQPEALAPAPQPPPPPPPAAPPPTSDSPGSEAPAEDPLELVSEMGEFSNEDICRYIDRSFSFWKEKEAELFDI Same 464905 chr1:6456072-6456191+ 350 350 20 0 194 6447414 6467425 235 235;370;505;560;639;1215;12903;51895 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:6447414-6467425&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575 0.707070707071 21.4501125 0.9813 9.846265 11.6038475 1.02631076099 1.05266712257 511 395 395;511;536;884;1170;1602;50220;68713 51.2328525 0.9499 18.2417475 32.991105 0.956918958076 1.03348611214 1741 638 638;851;876;1267;1741;2000;23707;36104 0.0 0.200365687991 chr2:238130128-238131732+ ENST00000377828.5,ENST00000477679.1 CDSintron,NCintron coding exon(s) ESPN very large alternative final exon 371 522572 chr17:59001524-59001562- NoOverlap chr17 59001524 59001562 - 4.12003079744 13 0.814038300145 -19.4666539339 23.5866847313 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;59001523;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A59001524-59001562-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A59001524-59001562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.104665641641 1.0265608756 1.08185560217 57078885 57078923 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;57078884;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A59001524-59001562-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A57078885-57078923&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLKPPLPLLFLLLLLLLLLLFPLYCFCFFCFYFFFFFFNYCHL Same 524000 chr17:59001524-59001562- 102 102 269 0 283 59001524 59001562 Best 371 371 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:59001524-59001562&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.512820512821 1.04 -3.71103076923 0.8756 -20.6729538462 16.9619230769 0.172589833166 1.05270320876 10134 Best 10134 10134 -4.09771538462 0.3775 -22.8015461538 18.7038307692 0.150135948196 1.00822700309 8011 Best 8011 8011 0.0 0.0 ENST00000262294.11,ENST00000577554.5 CDSintron,NCintron not annotated low complexity region 372 480271 chr10:23239726-23239818- NoOverlap chr10 23239726 23239818 - 13.3572516826 31 0.845773620104 3.01545176042 10.3417999222 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;23239725;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23239726-23239818-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A23239726-23239818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04191987992 1.02562021996 1.04178456394 23528655 23528747 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;23528654;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23239726-23239818-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A23528655-23528747&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NFSFHVLKNEMFTRHTLFRQFAVLADTSFNYIVSACNV Same 482181 chr10:23239726-23239818- 342 342 30 0 284 23239726 23250664 Best 372 372;968;2084 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:23239726-23250664&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.387096774194 0.287925696594 22.5242580645 1.0 6.28241612903 16.2418419355 1.04860269773 1.02632992731 276 Best 276 276;1637;4085 23.4124 0.4039 4.54140645161 18.8709935484 1.03636142722 1.02158588386 534 Best 534 534;2535;3694 0.0 0.0 ENST00000376501.5 NC coding exon(s) C10orf67 multiple exons added to 3' 373 531580 chr19:46427952-46428050- NoOverlap chr19 46427952 46428050 - 9.77699381474 33 0.721041035209 0.671502954129 9.10549086061 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;46427951;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A46427952-46428050-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A46427952-46428050&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00318588459 1.02556581204 1.04803499393 46931209 46931307 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;46931208;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A46427952-46428050-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A46931209-46931307&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDIEFLTKLNLFLQSEGRTVEDMARVLRQELCPPATGPR Same 533054 chr19:46427952-46428050- 386 386 -13 0 160 46427757 46428416 191 191;373;824 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:46427757-46428416&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.585858585859 0.356971153846 17.0056212121 0.8829 2.45579393939 14.5498272727 1.02804058092 1.02944042285 499 Best 499 499;1009;1233 17.0056212121 0.276 2.45579393939 14.5498272727 0.782092949077 0.967286233305 2542 Best 2542 2542;2596;2694 0.0 0.0 protein-coding gene protein-coding gene ENSG00000277531 374 516688 chr17:18123241-18123396+ NoOverlap chr17 18123241 18123396 + 9.23840963325 52 0.796554395479 4.13904815511 5.09936147814 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;18123240;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A18123241-18123396%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A18123241-18123396&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04576416478 1.02538998435 1.00290736509 18026555 18026710 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;18026554;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A18123241-18123396%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A18026555-18026710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MPGWWAGQAGAAGASQPLQTMPGGAGSQPGPTMATGAAWLLRGPWPRRRMPRAVWAAALRERGAGRLGVRGKDAWVLLTLEYVSG Same 518070 chr17:18123241-18123396+ 324 324 50 0 285 18123241 18123396 Best 374 374 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:18123241-18123396&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.717948717949 0.625668449198 16.9800173077 0.9678 9.50155769231 7.47845961538 1.04636074639 0.999462374237 298 Best 298 298 14.7795615385 0.4423 3.91391923077 10.8656423077 0.886919036258 0.913361589844 2166 Best 2166 2166 0.0 0.0575853923581 chr15:67825946-67828144+ ENST00000583079.1,ENST00000205890.9 NC,CDSintron under investigation Intronic to MYO15A. Potentially a coding exon, although no evidence for transcription in human or mouse. 375 548157 chr22:22906344-22906475+ NoOverlap chr22 22906344 22906475 + 5.82973634248 44 0.643593638375 -3.34808639911 9.1778227416 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;22906343;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A22906344-22906475%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A22906344-22906475&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.673394951773 1.02538812415 1.02374639213 23248514 23248645 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;23248513;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A22906344-22906475%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A23248514-23248645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSPGGHQDSDPLPLIHPAGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK None NA NA 0 286 22900978 22906658 Best 375 375;383;387 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:22900978-22906658&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.598484848485 0.258823529412 9.69180681818 0.6448 -2.95310454545 12.6449113636 0.977681163929 1.03418893366 914 851 851;914;1577 26.8814181818 0.6618 -4.96694545455 31.8483636364 1.00703876005 0.982354960671 993 Best 993 993;1400;1865 0.231127041821 chr22:22895375-22895694+ 0.590836695801 chr22:23573266-23573585- ENST00000390325.2 NC immunoglobulin segment overlaps an immunoglobulin region 376 588151 chr8:143738130-143738234- NoOverlap chr8 143738130 143738234 - 8.86710581609 35 0.62126802472 -1.36012581076 10.2272316269 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143738129;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143738130-143738234-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143738130-143738234&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.877835227046 1.02505448833 1.01155880197 144820300 144820404 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144820299;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143738130-143738234-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144820300-144820404&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMSGKRSRVRKPRARRAGRAQPAAGQQGPEVEPPPPTPGGPQGEAGVAPTGHVTSIEPAPQGHPR Same 589096 chr8:143738130-143738234- 474 474 -98 0 276 143733703 143738234 361 361;376;47468;58180;61062 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143733703-143738234&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.72380952381 0.509355509356 16.2372428571 0.8997 0.175317142857 16.0619257143 1.0453187736 0.993662056145 308 Best 308 308;828;30909;52884;63830 15.5973971429 0.4175 -4.51723714286 20.1146342857 1.02406545853 1.05392439094 720 Best 720 720;3471;45407;48220;48572 0.0 0.0370504226669 chr2:219303735-219303831- ENST00000533004.5 AntiNCintron coding exon(s) FAM83H 5' coding extension. 377 618511 chr11:55714823-55714993+ Extension chr11 55714823 55714993 + 8.09067887277 57 0.778970658507 -3.46186486344 11.5525437362 chr11:55714823-55715230+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;55714822;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A55714823-55714993%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A55714823-55714993&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02125714562 1.02502899997 0.918809524887 55482299 55482469 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;55482298;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A55714823-55714993%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A55482299-55482469&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQENQTSEVTFILLGFSEYPDLQTPLFLVFLTIYTVTVLGNLGMIIVIRISPKLHTPMCFFLSHLSFVDFCYSTTITPK Same 619213 chr11:55714823-55714993+ 311 311 66 0 287 55714823 55715679 Best 377 377;2137 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:55714823-55715679&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.526315789474 0.0921336206897 9.18066315789 0.7665 -6.88770350877 16.0683666667 1.08447264918 0.928097768832 36 Best 36 36;2809 35.0799491228 0.8766 -15.3121017544 50.3920508772 1.02230149832 0.992607094587 748 Best 748 748;1292 0.107118688306 chr11:55773438-55774382+ 0.25531491212 chr1:248387609-248388535+ pseudogene extension OR5D2P pseudogene extended (ENSG00000254457) 378 497199 chr12:120216835-120217116- NoOverlap chr12 120216835 120217116 - 12.0927297752 94 0.86725982056 8.24467657437 3.84805320082 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;120216834;282;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A120216835-120217116-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A120216835-120217116&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04551875392 1.02490601167 0.941368787801 120654638 120654919 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;120654637;282;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A120216835-120217116-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A120654638-120654919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IRSVIRRSWESGHAHPMSREPSPRRRLDPATLSRTPSQEQLIAELQGRLGIQPEAEEPAEAAGPSAQDWLTEGVIITVQPRGKRAGGQLVEKVAR Same 499207 chr12:120216835-120217116- 443 443 -65 0 288 120216252 120219548 Best 378 378;1189;3047;10568;22491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:120216252-120219548&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.702127659574 0.57757296467 14.5332361702 0.9433 8.0558393617 6.47739680851 1.0302665504 0.978799238532 479 Best 479 479;873;2418;4055;5885 29.6787202128 0.8248 8.43281914894 21.2459010638 1.03495564828 1.02569407251 560 428 428;560;1751;2468;3435 0.0 0.0 ENST00000323871.9,ENST00000228307.11,ENST00000538144.5 NC,CDSintron,NCintron coding exon(s) PXN 2 cassette exons 379 572519 chr6:109262000-109262089+ NoOverlap chr6 109262000 109262089 + 11.2711433887 30 0.846494239719 0.944683369497 10.3264600193 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109261999;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109262000-109262089%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109262000-109262089&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04076143478 1.02484310675 1.03577920964 109583203 109583292 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109583202;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109262000-109262089%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109583203-109583292&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDQDSHVLLLEMFSKLLELLTLRHRLIEMSLESAHLAR Same 573546 chr6:109262000-109262089+ 338 338 41 0 198 109254451 109270128 241 241;379;398;784;1262;1279;1591;1821;4627;6101 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109254451-109270128&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 0.342857142857 16.2631233333 0.9996 2.89415666667 13.3689666667 1.06135674535 1.04888397679 138 103 103;138;267;470;609;712;856;2049;2971;3012 28.7660933333 0.7574 5.13631333333 23.62978 1.05888102744 1.05077498746 235 Best 235 235;262;499;654;818;864;1043;1677;1862;2261 0.0 0.0 ENST00000453496.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 380 585823 chr8:10497773-10497907- NoOverlap chr8 10497773 10497907 - 12.8698511415 45 0.829735425515 -2.0192287657 14.8890799072 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;10497772;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10497773-10497907-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A10497773-10497907&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02245327794 1.02478452492 0.95759321951 10355283 10355417 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;10355282;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10497773-10497907-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A10355283-10355417&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TFSNIHSERKQVQKVIIHKDYKPPQLDSDLSLLLLATPVQFSNFKMPVCLQEEER Same 586760 chr8:10497773-10497907- 318 318 62 0 31 10496192 10498809 31 31;380;667;765;1871;8583 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:10496192-10498809&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.399408284024 19.0283466667 0.8975 -2.85094222222 21.8792888889 1.05167519621 0.964629868067 238 61 61;238;682;997;2094;6527 20.2997044444 0.3262 -2.79264888889 23.0923533333 1.11586666708 1.04555281582 24 Best 24 24;1365;2041;2153;3654;11606 0.111590548089 chr8:10531295-10531545+ 0.239896431788 chr8:10531295-10531545+ ENST00000523024.1,ENST00000521149.2 NC,NCintron protein-coding gene protein-coding gene ENSG00000253649 381 585387 chr8:131938225-131938314+ NoOverlap chr8 131938225 131938314 + 11.1414299297 30 0.889426515094 1.80534665858 9.33608327111 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;131938224;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A131938225-131938314%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A131938225-131938314&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04326449077 1.02478137599 1.05162292657 132950472 132950561 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;132950471;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A131938225-131938314%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A132950472-132950561&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YNMKDYVQVPAAELEKPYEFTSTRESPTFLYLSR Same 586325 chr8:131938225-131938314+ 323 323 58 0 289 131938225 131938314 Best 381 381 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:131938225-131938314&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4 0.278637770898 18.7297933333 0.9957 1.27457666667 17.4552166667 1.0581886614 0.994470735117 173 Best 173 173 20.7206133333 0.5099 -2.25963333333 22.9802466667 1.07312282009 1.05448455742 153 Best 153 153 0.0 0.0 ENST00000254624.9,ENST00000522709.5 CDSintron,UTR5intron coding exon(s) EFR3A 5' exon 382 549353 chr22:50714916-50715056+ NoOverlap chr22 50714916 50715056 + 20.487980868 47 0.679783256957 15.7269916395 4.76098922846 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50714915;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50714916-50715056%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50714916-50715056&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02186600096 1.02473863308 0.956590339917 51153344 51153484 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51153343;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50714916-50715056%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51153344-51153484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGEDMAVGQEVAQAAEMEPPCCAEKLDEMLAAAAEPTLRPDIADADSRAATVKQRPTSRRITPAEISVRATGGWER None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.652482269504 0.867897727273 34.4553361702 0.9458 24.2951574468 10.1601787234 1.06137026907 1.024966042 136 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 62.4877212766 0.9102 37.4103446809 25.0773765957 1.0011112115 1.03646285481 1092 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.0892700593866 chr11:70492335-70492465- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 383 548158 chr22:22906491-22906658+ NoOverlap chr22 22906491 22906658 + 4.85487678767 56 0.649608987564 -3.94160714958 8.79648393725 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;22906490;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A22906491-22906658%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A22906491-22906658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.606493288794 1.0247325581 1.03037471531 23248661 23248828 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;23248660;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A22906491-22906658%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A23248661-23248828&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS None NA NA 0 286 22900978 22906658 375 375;383;387 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:22900978-22906658&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.577380952381 0.429667519182 5.2795875 0.6294 -6.48472321429 11.7643107143 0.825918389144 1.06978849778 1577 851 851;914;1577 20.0431160714 0.6231 -13.2106035714 33.2537196429 0.981542564394 0.915073833189 1400 993 993;1400;1865 0.243121962944 chr22:22895375-22895694+ 0.582873325363 chr22:23573266-23573585- ENST00000390325.2 NC immunoglobulin segment overlaps an immunoglobulin region 384 470096 chr1:9960725-9960787- NoOverlap chr1 9960725 9960787 - 8.42720943689 21 0.902998397803 -7.57654754321 16.0037569801 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;9960724;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A9960725-9960787-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A9960725-9960787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.761145448153 1.02464775547 0.954370030008 10020783 10020845 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;10020782;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A9960725-9960787-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A10020783-10020845&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSGPSVTMIHFCLAHTAYRLHCWLLRTHQLR Same 471978 chr1:9960725-9960787- 359 359 25 0 290 9951232 9960787 Best 384 384;1216;1412;2730 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:9951232-9960787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52380952381 0.473684210526 13.6987619048 0.9745 -4.35827619048 18.0570380952 0.950178457157 0.98917263843 1088 1030 1030;1088;1472;1491 15.0880571429 0.403 -4.47249047619 19.560547619 0.741893249622 1.0281868112 2658 2577 2577;2658;2964;3349 0.0 0.0 ENST00000377205.5,ENST00000462686.1 AntiUTR5intron,AntiNCintron pseudogene unitary pseudogene ENSG00000283611 385 583187 chr7:155545831-155545944- NoOverlap chr7 155545831 155545944 - 8.1704499051 38 0.708276814719 0.0895947735561 8.08085513154 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;155545830;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A155545831-155545944-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A155545831-155545944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.960677996843 1.0246297761 1.05289744908 155338526 155338639 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;155338525;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A155545831-155545944-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A155338526-155338639&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LWLASSSDHSCFVSCLACRALMDEIEHDITKARQKKTKVGSFRINPDGTQERRK Same 584114 chr7:155545831-155545944- 388 388 -3 0 291 155545831 155545944 Best 385 385 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:155545831-155545944&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.570175438596 0.786982248521 11.5924789474 0.8847 -1.86285789474 13.4553368421 1.0417142725 1.02658396327 344 Best 344 344 15.3592815789 0.5053 -3.73512368421 19.0944052632 1.05301125784 1.0486645492 289 Best 289 289 0.0 0.0 coding exon(s) CNPY1 first coding exon 386 539836 chr2:110027760-110027909- NoOverlap chr2 110027760 110027909 - 8.68720396638 50 0.564645761807 2.03882392526 6.64838004112 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110027759;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110027760-110027909-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110027760-110027909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.942123731705 1.02406438807 1.04831662039 110785337 110785486 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110785336;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110027760-110027909-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110785337-110785486&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NQQAGLPSSELCFSGTKYATQFPCPRSYYDPDPLTQSLDSCLPCPPGHCCG*ENLTRASGPCAAGESPALP Same 541196 chr2:110027760-110027909- 484 484 -98 12 292 110022446 110035237 Best 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.68 0.416666666667 13.503342 0.7975 3.559794 9.943548 1.07056118301 1.04752130676 80 Best 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 41.095772 0.8729 14.792276 26.303496 0.955446289397 1.03374293455 1755 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 387 548156 chr22:22900978-22901292+ NoOverlap chr22 22900978 22901292 + 4.58555235578 105 0.69290462748 -4.25379333458 8.83934569036 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;22900977;315;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A22900978-22901292%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A22900978-22901292&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.773793725492 1.0238948978 1.04681642227 23243158 23243472 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;23243157;315;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A22900978-22901292%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A23243158-23243472&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSPGGHQDSDPLPLIHPAGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS None NA NA 0 286 22900978 22906658 375 375;383;387 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:22900978-22906658&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.593650793651 0.398917798757 6.58592761905 0.5862 -5.55903428571 12.1449619048 0.987462514487 1.05560540963 851 Best 851 851;914;1577 21.8129580952 0.6395 -10.3479609524 32.1609190476 0.942293389816 1.04081151826 1865 993 993;1400;1865 0.207204687853 chr22:22895375-22895694+ 0.527733942175 chr22:22895375-22895694+ ENST00000390323.2 NC immunoglobulin segment overlaps an immunoglobulin region 388 552903 chr3:88138705-88139073+ NoOverlap chr3 88138705 88139073 + 7.32769676837 123 0.864060847521 2.42883903167 4.8988577367 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88138704;369;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88138705-88139073%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88138705-88139073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01026254984 1.02373608794 0.986465541514 88187855 88188223 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88187854;369;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88138705-88139073%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88187855-88188223&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YLALIFFFLQVEEEGLQICVEICGCALQLDLHDDPKTKCLIYKTIAHFLPNDLEILRICALSIFFLERSLEAYRTVEELYKRPDEEYNEGTSSVQNRVRFELLPILKKGLFFDPEFWNFVMIKKNCVALLSDK Same 553845 chr3:88138705-88139073+ 294 294 94 0 293 88126134 88139310 Best 388 388;882;969;1723;6190;10019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88126134-88139310&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.349593495935 0.725307125307 11.7861886179 0.9779 5.85139430894 5.93479430894 1.03801116605 0.930343626376 384 Best 384 384;810;1269;2625;2709;3294 35.6618699187 0.9247 8.07002764228 27.5918422764 0.997988448121 1.01678545092 1140 476 476;635;1080;1140;2139;2319 0.0 0.0 ENST00000498458.2,ENST00000462901.5 NC,AntiUTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 389 588888 chr9:35910464-35910637+ NoOverlap chr9 35910464 35910637 + 9.12439999498 58 0.815593668032 0.606110345508 8.51828964947 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35910463;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35910464-35910637%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35910464-35910637&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02117153648 1.02355062563 1.01924546641 35910461 35910634 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35910460;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35910464-35910637%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35910461-35910634&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAQWAMETAVIGVVVVLFVVTVAITCVLCCFSCDSRAQDPQGGPGRSFTVATFRQEASLFTGPVR Same 589832 chr9:35910464-35910637+ 309 309 80 0 294 35910464 35910637 Best 389 389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35910464-35910637&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.620689655172 0.483333333333 15.9293103448 0.9819 2.06199827586 13.867312069 0.960953175955 0.991953404866 1031 Best 1031 1031 15.2729068966 0.3394 -0.0256155172414 15.2985224138 0.950547881299 1.01046459309 1815 Best 1815 1815 0.0 0.0 ENST00000443779.1 NC protein-coding gene protein-coding gene ENSG00000235387 390 507790 chr15:90934338-90934544+ NoOverlap chr15 90934338 90934544 + 9.41416230755 69 0.69605554284 2.20323041319 7.21093189436 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;90934337;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A90934338-90934544%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A90934338-90934544&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03386412366 1.023385399 1.04407892965 91477568 91477774 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;91477567;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A90934338-90934544%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A91477568-91477774&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPSCLSLAPPPLSSALVHHPHLCQTTRDVHGRHYPGFFCPRLSDSPEEAYCCHLQAAGGSCCTRAEFEALYQVNLSALPPPPILR Same 509521 chr15:90934338-90934544+ 376 376 14 0 295 90934338 90943589 Best 390 390;3142;16923;17834 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:90934338-90943589&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.618357487923 0.374321880651 16.5494536232 0.9775 2.00697681159 14.5424768116 0.92522281476 0.987227489304 1212 Best 1212 1212;1242;1842;27563 20.2759623188 0.5123 -2.08943913043 22.3654014493 1.01502948503 1.04745667361 849 Best 849 849;3153;3539;18232 0.0 0.0400571280752 chr17:82019293-82019381- ENST00000394275.6,ENST00000480470.5,ENST00000438890.1 UTR5,NC,AntiNCintron coding exon(s) UNC45A 5' exons 391 489710 chr11:118015682-118015810- NoOverlap chr11 118015682 118015810 - 10.2213605296 43 0.705806057832 4.69058362412 5.53077690546 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;118015681;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A118015682-118015810-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A118015682-118015810&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06328447149 1.02331069898 1.00742681458 117886397 117886525 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;117886396;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A118015682-118015810-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A117886397-117886525&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLWEGAQLHVSAGEDSISTLGLILGVGLLLLLVSILGYSLAKWYQRGYCWEGECALGPVAPVLR Same 491696 chr11:118015682-118015810- 357 357 34 0 296 118013793 118015810 Best 391 391;604;13115 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:118013793-118015810&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.635658914729 0.389492753623 15.4743488372 0.9595 7.65757674419 7.81677209302 1.06287980044 1.00613049702 122 Best 122 122;454;2606 19.8326651163 0.4403 7.18958604651 12.6430790698 1.02116096485 0.936459185017 770 Best 770 770;2260;3505 0.0 0.0 ENST00000527329.5 NC protein-coding gene protein-coding gene ENSG00000255274 392 502605 chr14:95922793-95922963+ NoOverlap chr14 95922793 95922963 + 21.8157790139 57 0.975474200876 4.84743162153 16.9683473923 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;95922792;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A95922793-95922963%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A95922793-95922963&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.993367984446 1.02259170531 1.00302137294 96389130 96389300 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;96389129;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A95922793-95922963%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A96389130-96389300&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MIIFCAASFQLQVSLARKIKTFATKMVITSENDEDRGGQEKESKEESVLAMLGIIGTILNLIVIIFVYIYTTL Same 504508 chr14:95922793-95922963+ 419 419 -27 0 297 95922793 95923212 Best 392 392;3252 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:95922793-95923212&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.40350877193 0.152951699463 30.5053859649 0.9997 7.02884912281 23.4765368421 1.0163666348 0.955463929662 602 Best 602 602;7477 44.2983754386 0.9272 3.4965754386 40.8018 0.977573232838 0.961335398938 1459 Best 1459 1459;21132 0.0 0.0346289082737 chr12:121921306-121921683+ ENST00000503525.2 NC protein-coding gene protein-coding gene ENSG00000250366 393 561217 chr4:17874610-17874762- NoOverlap chr4 17874610 17874762 - 10.5758686099 51 0.944876932996 0.702184287356 9.87368432257 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17874609;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17874610-17874762-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17874610-17874762&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02226543994 1.02258819384 0.986690963846 17876233 17876385 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17876232;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17874610-17874762-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17876233-17876385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVPISEVSLDPIISSNPLLRWWATSASNDSLLEELNNRFEQITNAWVQVSGDEAENCIHK Same 562208 chr4:17874610-17874762- 372 372 21 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.372549019608 0.0 12.2862254902 0.9997 0.571207843137 11.7150176471 1.04585970076 1.03610703057 304 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 24.8328039216 0.9113 -2.80049411765 27.6332980392 1.02642508435 1.01502876581 674 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0517596319136 chr10:96981391-96985134+ ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 394 485924 chr11:111451043-111451141+ NoOverlap chr11 111451043 111451141 + 9.49369704949 33 0.791482229019 1.68132124796 7.81237580153 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111451042;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111451043-111451141%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111451043-111451141&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03668979302 1.02230891653 1.05455774567 111321768 111321866 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111321767;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111451043-111451141%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111321768-111321866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGHLDSSWSLSLNSTHLGDLLPPEPGIRNPTVCLQVNDTLAFLVTHEHYPEYDL*VSR Same 487882 chr11:111451043-111451141+ 340 340 54 1 298 111447053 111473375 Best 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.545454545455 0.138849929874 11.4458575758 0.9702 0.247818181818 11.1980393939 1.01689223234 1.05989281398 598 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 21.7540363636 0.678 -0.747039393939 22.5010757576 1.07535959173 1.05231905051 143 Best 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000531009.1,ENST00000525890.1 NC,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 395 582916 chr7:143646725-143646958- NoOverlap chr7 143646725 143646958 - 9.14998582464 78 0.647044151393 -0.663227031246 9.81321285589 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143646724;234;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143646725-143646958-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143646725-143646958&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05484580251 1.02221103084 0.992146958711 143343818 143344051 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143343817;234;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143646725-143646958-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143343818-143344051&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCLAKLRVDGAAFLQIPAEGVPAYISLHRLLRKMLRGSGLPAVSRENPVASDSYEAAVLSLATGLAHSGTDCSQLAQGLGTWTCSSSLYPSK Same 583845 chr7:143646725-143646958- 486 486 -91 0 72 143639739 143647639 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.606837606838 0.185714285714 22.0837935897 0.9588 1.71495641026 20.3688371795 0.9839486154 1.01364872752 877 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 34.7499923077 0.7331 -2.73524615385 37.4852384615 0.957199861489 1.01260689487 1738 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.941152533364 chr7:143719683-143720674+ 0.835328593186 chr7:143719683-143720674+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 396 562940 chr4:151176814-151176954- NoOverlap chr4 151176814 151176954 - 13.1661764964 47 0.880491989825 3.42626594189 9.73991055446 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;151176813;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151176814-151176954-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A151176814-151176954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00243042226 1.02206515906 1.01086903827 152097966 152098106 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;152097965;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151176814-151176954-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A152097966-152098106&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPEITIVAAEPLRPASWFPGTPPPGLGFPTSSAAGSWRPNELVPAEVNK None NA NA 0 161 151175562 151187459 192 192;396;2038;2250;4391;9851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:151175562-151187459&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.595744680851 0.160227272727 20.921512766 0.9862 5.9367212766 14.9847914894 0.975045721076 0.999344976209 931 84 84;931;1769;1951;1972;2039 29.9538574468 0.6411 5.5257106383 24.4281468085 1.01365412513 1.04273903458 878 Best 878 878;883;2268;2607;3428;4439 0.0 0.0 ENST00000304527.8,ENST00000474743.5 UTR5,NC coding exon(s) SH3D19 5' coding exons 397 486534 chr11:125947712-125947852+ NoOverlap chr11 125947712 125947852 + 6.00761267796 47 0.743319876175 -2.23766170078 8.24527437874 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125947711;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125947712-125947852%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125947712-125947852&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.842077213893 1.02198175625 1.04601202211 125817607 125817747 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125817606;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125947712-125947852%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125817607-125817747&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPAMPLLSPGQPHPTPEAPVEEVVSVQGVRGGSVELACGSGPAPLLVLWSFTPLGSLVPRPVAVTDGAMSK Same 488496 chr11:125947712-125947852+ 370 370 27 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.702127659574 0.287990196078 11.4220893617 0.8515 0.705953191489 10.7161361702 1.03978600082 1.05277476057 367 Best 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 19.0846042553 0.5302 -0.914927659574 19.9995319149 1.11066350926 1.04539281294 34 Best 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0235366792242 chr19:41714971-41715158+ protein-coding gene protein-coding gene ENSG00000283703 398 572513 chr6:109254451-109254624+ NoOverlap chr6 109254451 109254624 + 7.19862413124 58 0.865068415666 -0.212632717757 7.411256849 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109254450;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109254451-109254624%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109254451-109254624&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00009110666 1.02172033546 1.04868967805 109575654 109575827 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109575653;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109254451-109254624%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109575654-109575827&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPLLIPDYQPYLQLLDSYFEAYQHTLDPEERFTLAQVMTDIVHRRPRFDLSHPYFIKAYQEECTCLRLHLQLVR Same 573540 chr6:109254451-109254624+ 304 304 94 0 198 109254451 109270128 241 241;379;398;784;1262;1279;1591;1821;4627;6101 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109254451-109270128&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.522988505747 0.509268292683 13.4508551724 1.0 -0.460615517241 13.9114706897 0.986947187563 0.986393602332 856 103 103;138;267;470;609;712;856;2049;2971;3012 22.9205844828 0.8324 -3.01655689655 25.9371413793 1.0144616985 1.02557428132 864 235 235;262;499;654;818;864;1043;1677;1862;2261 0.0 0.0 ENST00000453496.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 399 588122 chr8:142797632-142797829- NoOverlap chr8 142797632 142797829 - 8.39067120139 66 0.67997854489 2.06003331845 6.33063788294 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;142797631;198;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142797632-142797829-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A142797632-142797829&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02398026456 1.02156675342 1.04755254821 143879048 143879245 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;143879047;198;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142797632-142797829-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A143879048-143879245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPTEPPPLSTASPGGILVMKSCSPTCPNSTVSSDSRALSVSCCQGSQCNRSAAAGLVGSPGTLWASIAASQLWALLQAAR Same 589067 chr8:142797632-142797829- 392 392 7 0 299 142797632 142806142 Best 399 399;852;11586 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:142797632-142806142&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.70202020202 0.414746543779 12.0935166667 0.8094 2.98269242424 9.11082424242 1.04180653688 1.04648723542 343 Best 343 343;1715;14005 11.4730439394 0.4358 -1.61783181818 13.0908757576 0.848132952048 0.980540775489 2323 Best 2323 2323;3159;19529 0.0 0.0479644828766 chr19:35785189-35785334+ ENST00000510610.2 AntiNCintron pseudogene lymphocyte antigen 6 complex, locus K (LY6K) pseudogene (ENSG00000283686) 400 582919 chr7:143647157-143647273- NoOverlap chr7 143647157 143647273 - 9.03434091654 39 0.667302459246 1.58794869406 7.44639222247 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143647156;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143647157-143647273-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143647157-143647273&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.98487270883 1.02141267912 1.05370676047 143344250 143344366 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143344249;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143647157-143647273-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143344250-143344366&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLCPLLSEHGLQCSLEPHLNSDLCVYCCKAYSDKEAKQLQEFVAEGGGLLIGGQAWWWASQNPGHCPLAGFPGNIILNCFGLSILPQTLK Same 583848 chr7:143647157-143647273- 421 421 -21 0 72 143639739 143647639 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.623931623932 0.0 20.7887871795 0.9619 5.90058205128 14.8882051282 1.02366434766 1.02141248907 543 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 46.4737179487 0.9021 7.5991 38.8746179487 0.968835314379 0.99128456867 1585 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.968919121 chr7:143719683-143720674+ 0.850634783641 chr7:143719683-143720674+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 401 500706 chr14:22086736-22086804+ NoOverlap chr14 22086736 22086804 + 5.40350869298 23 0.759915876349 -11.1385171102 16.5420258032 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22086735;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22086736-22086804%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22086736-22086804&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.427151206086 1.02138041357 0.936199766734 22555013 22555081 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22555012;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22086736-22086804%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22555013-22555081&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGISIINCAYENTAFDYFPWYQQFPGK None NA NA 0 300 22086679 22096605 Best 401 401;4479;18994;21810 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22086679-22096605&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.405797101449 0.359375 9.30997391304 0.8763 -15.6336826087 24.9436565217 0.833562978335 0.983288969312 1541 Best 1541 1541;23184;43077;62785 12.5455086957 0.3799 -19.5374913043 32.083 0.797986140096 0.983383545823 2482 Best 2482 2482;8294;14730;26667 0.0 0.0 ENST00000390451.2 NC immunoglobulin segment overlaps an immunoglobulin region 402 488240 chr11:62832442-62832534- NoOverlap chr11 62832442 62832534 - 15.139996954 31 0.881903046144 3.47252894794 11.6674680061 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;62832441;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A62832442-62832534-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A62832442-62832534&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03795789664 1.02129203616 1.03134690479 62599914 62600006 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;62599913;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A62832442-62832534-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A62599914-62600006&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLVVPSGAEDIDLNSPDHPNHKSNESLLITVLWRRLSTFGRRGSSRPSKRQPDQIR Same 490217 chr11:62832442-62832534- 366 366 36 0 301 62832028 62832534 Best 402 402;4742 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:62832028-62832534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.602150537634 1.30484693878 23.7458193548 0.9849 6.20303548387 17.542783871 1.0482682362 1.01572041942 281 Best 281 281;34114 27.2822290323 0.3932 6.49861612903 20.7836129032 1.04760285936 1.03568743885 363 Best 363 363;29246 0.0 0.0 ENST00000536401.1,ENST00000535817.1 UTR3,AntiNCintron protein-coding gene protein-coding gene ENSG00000283268 403 579706 chr7:142740698-142740844+ NoOverlap chr7 142740698 142740844 + 5.69772442141 49 0.728622343879 -2.70547156188 8.40319598329 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142740697;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142740698-142740844%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142740698-142740844&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.793728347297 1.02121606618 1.04189824141 142448545 142448691 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142448544;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142740698-142740844%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142448545-142448691&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTSLTIQCQVDSQVTMMFWYRQQPGQSLTLIATANQGSEATYESGFVIDKFPISRPNLTFSTLTVSNMSPEDSSIYLCSVEDTVR None NA NA 0 302 142740698 142740844 Best 403 403 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142740698-142740844&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.496598639456 0.33612804878 4.84438571429 0.9831 -7.3828122449 12.2271979592 0.939571596335 1.06969632249 1142 Best 1142 1142 8.12389183673 0.3791 -8.04811632653 16.1720081633 0.827390522906 1.04637979817 2394 Best 2394 2394 0.0 0.0 ENST00000422143.2,ENST00000610416.2 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 404 540645 chr2:159232075-159232110- NoOverlap chr2 159232075 159232110 - 5.3311582605 12 0.96400015259 -11.3821749662 16.7133332267 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;159232074;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159232075-159232110-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A159232075-159232110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0068428646494 1.0210627715 0.939312335264 160088586 160088621 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;160088585;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159232075-159232110-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A160088586-160088621&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CCYWYTVNMP**YIIQCNNQHG Same 542010 chr2:159232075-159232110- 554 554 -150 4 303 159232075 159232110 Best 404 404 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:159232075-159232110&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.0 3.38536666667 0.9642 -26.4069083333 29.792275 0.344474551416 1.01225456984 4762 Best 4762 4762 -4.13265 0.5358 -34.1463916667 30.0137416667 0.313732533614 1.06263759354 4492 Best 4492 4492 0.0 0.0 ENST00000263635.7,ENST00000470074.1 AntiUTR3,AntiNC not annotated potentially spurious 405 553042 chr3:111720724-111720879+ NoOverlap chr3 111720724 111720879 + 13.7937904774 52 0.966058066447 6.96967693934 6.82411353806 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;111720723;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A111720724-111720879%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A111720724-111720879&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.975594972826 1.02086081692 1.03984652501 111439571 111439726 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;111439570;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A111720724-111720879%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A111439571-111439726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLPAILDWVKTQKPGAMGVNIITSDFVDLVDFAATVIKLNDLLQEDTALAKC Same 553994 chr3:111720724-111720879+ 347 347 58 0 304 111720724 111720879 Best 405 405 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:111720724-111720879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.512820512821 0.19512195122 17.1024442308 0.9975 7.95870192308 9.14374230769 1.02506281586 1.03436975043 525 Best 525 525 37.0437269231 0.8993 14.3353788462 22.7083480769 0.99545616459 1.03421914652 1185 Best 1185 1185 0.0 0.0 ENST00000472215.1,ENST00000393934.7 NC,CDSintron coding exon(s) PLCXD2 final coding exon 406 491112 chr12:40446487-40446630+ NoOverlap chr12 40446487 40446630 + 16.7841020475 48 0.937738422217 7.45478117156 9.32932087593 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40446486;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40446487-40446630%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40446487-40446630&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.011613719 1.02066370226 1.03063935201 40840289 40840432 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40840288;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40446487-40446630%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40840289-40840432&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DELWVFLHTGCYAKCPDSAPYLDENTMKCVSLSECSCFYNDVIPAGGVIEDNCGRTWYILY Same 493089 chr12:40446487-40446630+ 356 356 50 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.423611111111 0.0 25.042525 0.9824 12.1809229167 12.8616020833 0.991604996489 1.03632736799 820 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 34.6560645833 0.8424 0.769979166667 33.8860854167 0.963173103834 0.989364414222 1660 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.16806570987 chr11:1180354-1180516+ ENST00000454784.8 NC redundant PhyloCSF signals are accounted for elsewhere on the list 407 549335 chr22:50678768-50678926+ NoOverlap chr22 50678768 50678926 + 22.0421998141 53 0.735039176819 10.8360678059 11.2061320082 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50678767;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50678768-50678926%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50678768-50678926&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01805748709 1.02051567795 1.02413410863 51117196 51117354 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51117195;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50678768-50678926%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51117196-51117354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWEPDPYLSVNPECPLSLAAQLDNATDLLKVLKNGGAHLDFRTRDGLTAVHCATRQRNAAALTVSEGGAWPGGALAW None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.647798742138 0.660997732426 42.2724 0.9933 24.030909434 18.241490566 0.977866807004 1.05433914489 910 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 69.6102415094 0.9516 27.7629018868 41.8473396226 1.00112777891 1.02516938254 1091 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.180648415016 chr19:50713798-50713949- ENST00000262795.5 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 408 491106 chr12:40443073-40443174+ NoOverlap chr12 40443073 40443174 + 19.2459352972 34 1.0 4.5384882408 14.7074470564 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40443072;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40443073-40443174%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40443073-40443174&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03823182794 1.01947923773 1.04413397725 40836875 40836976 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40836874;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40443073-40443174%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40836875-40836976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSQTIIIFILKDYCGHENGTFRILTESVPCCEDGLTCSRKIIVAFQVQYYFLYFFLSHCEKPNK Same 493083 chr12:40443073-40443174+ 346 346 62 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.382352941176 0.905325443787 25.1082382353 0.9827 9.43178235294 15.6764558824 1.04064286883 1.03807063335 356 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 40.4053941176 0.8994 4.27802058824 36.1273735294 0.977006957535 1.00792089104 1472 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.238464324329 chr11:1235303-1235413+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 409 532004 chr19:51915054-51915275- NoOverlap chr19 51915054 51915275 - 4.24485547468 74 0.557918504451 -4.36675940978 8.61161488446 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51915053;222;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51915054-51915275-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51915054-51915275&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.501190524703 1.0193744774 1.0398178373 52418307 52418528 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52418306;222;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51915054-51915275-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52418307-52418528&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFLNTHWRTHMGEKPYGCNECGKMFSIKFSLILHQRTHTGEKPYECSQCQKTFSQKSHLNIHQRSHTGEKP*ECGECHKAFSR Same 533481 chr19:51915054-51915275- 502 502 -93 9 163 51914745 51917661 195 195;409;1357;1730;14809 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51914745-51917661&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.432432432432 0.192792010421 8.69440675676 0.5909 -7.30669594595 16.0011027027 1.04610576222 0.942260031171 301 Best 301 301;1224;3007;3293;9331 32.4418094595 0.8205 -17.5168472973 49.9586567568 1.02643404878 1.03891088794 673 Best 673 673;959;1476;1923;2031 0.224414169375 chr19:52033720-52035440- 0.368837070119 chr19:22313671-22317176+ ENST00000613007.4 AntiUTR5intron pseudogene zinc finger protein pseudogene (ENSG00000283285) 410 544150 chr20:58853357-58853452+ NoOverlap chr20 58853357 58853452 + 14.1494188271 32 0.799195086595 -0.420299927238 14.5697187544 ENST00000371099.6,ENST00000371100.8,ENST00000371102.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;58853356;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58853357-58853452%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A58853357-58853452&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04240627923 1.0191623829 0.984161731562 57428412 57428507 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;57428411;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58853357-58853452%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A57428412-57428507&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGNSPSNHLWRPQGQLPPVLGLAQPKRWRPNRLTTSPSPSR Same 545541 chr20:58853357-58853452+ 384 384 26 0 305 58839591 58856213 Best 410 410;1778;7945;12986;19091;20890;24880;65020;71495 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:58839591-58856213&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.697916666667 0.602150537634 21.829340625 0.9987 0.5245 21.304840625 1.06404771121 0.966045264053 115 Best 115 115;1018;3966;4263;7912;16426;32661;49033;70767 19.329978125 0.4114 -2.823121875 22.1531 1.04746708968 1.05427593539 366 Best 366 366;3178;7236;8695;17364;24762;29540;46544;65521 0.0 0.190818406422 chr5:177459603-177459740- ENST00000371099.6,ENST00000464624.6,ENST00000313949.11,ENST00000462499.5 CDS,NC,UTR3intron,NCintron coding exon(s) GNAS cassette exon 411 735123 chrX:103707227-103707343- Extension chrX 103707227 103707343 - 7.77194096798 39 0.78098295489 0.468146162824 7.30379480515 chrX:103707227-103707367- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;103707226;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A103707227-103707343-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A103707227-103707343&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00333539246 1.0190656309 1.05371873053 102962155 102962271 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;102962154;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A103707227-103707343-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A102962155-102962271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AKRIDTISRAVFPFTFLIFNIFYWVVYKVLWSEDIHQAL Same 735725 chrX:103707227-103707343- 355 355 56 0 306 103707227 103707343 Best 411 411 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:103707227-103707343&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.461538461538 0.168831168831 12.4520538462 0.9961 -1.59603846154 14.0480923077 1.07086798086 1.01212302144 78 Best 78 78 45.5619897436 0.9851 -6.36317435897 51.9251641026 0.976339475716 0.957327070276 1489 Best 1489 1489 0.0 0.328546600439 chr5:151822673-151822963- ENST00000372617.4,ENST00000436213.5 Extension3p,NC pseudo-exon GLRA4 has a premature termination codon in the final exon that is human specific 412 526656 chr19:1525302-1525397+ NoOverlap chr19 1525302 1525397 + 13.8787843287 32 0.726884966049 6.47926244698 7.39952188171 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;1525301;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1525302-1525397%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A1525302-1525397&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03624680581 1.01895443063 1.03404021899 1525301 1525396 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;1525300;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1525302-1525397%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A1525301-1525396&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SADPSPQGAFSRCYKLTDMSTSAVFALKVVPCGGAGAGWLRPQGK Same 528101 chr19:1525302-1525397+ 383 383 29 0 61 1524154 1533821 68 68;129;412;744;947;2039;3059;9713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:1524154-1533821&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.697916666667 0.688172043011 23.647353125 0.891 12.41270625 11.234646875 1.0126816976 1.03982885894 631 205 205;265;523;631;1057;1237;1482;2663 49.367528125 0.7271 9.860228125 39.5073 1.02302968344 1.01085302494 739 449 449;648;739;1129;1230;1261;1334;1921 0.0 0.355094061004 chr5:58458985-58459092- ENST00000334770.8 UTR5 pseudo-exon PLK5 pseudo exons 413 592930 chr9:114098923-114099015- NoOverlap chr9 114098923 114099015 - 16.9249517418 31 0.888917766178 8.0134419597 8.91150978208 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;114098922;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114098923-114099015-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A114098923-114099015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03804764956 1.01881053491 1.03860902873 116861203 116861295 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;116861202;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114098923-114099015-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A116861203-116861295&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HQDVPSALLSDPRVRPMSAAELRRGQQSVLHCSGTRTLQVRNPSLYLPNK Same 593883 chr9:114098923-114099015- 367 367 46 0 201 114097703 114099171 245 245;413;642;1048;5747 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:114097703-114099171&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.688172043011 0.733004926108 22.3925870968 0.9853 7.7206 14.6719870968 1.04268077512 1.04334182287 336 144 144;336;489;1116;1913 20.7727387097 0.5601 -0.992583870968 21.7653225806 1.08284034222 1.05085962041 115 Best 115 115;195;206;3221;3941 0.0 0.0671591364807 chr14:49633287-49635149- ENST00000374118.7,ENST00000468460.1 UTR5,NC coding exon(s) KIF12 coding exons added to make inferred transcript model 414 463457 chr1:14180434-14180598+ NoOverlap chr1 14180434 14180598 + 17.5480144793 55 0.915431726281 3.8534163708 13.6945981085 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;14180433;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A14180434-14180598%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A14180434-14180598&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.986162517737 1.01872690728 0.954489644833 14506929 14507093 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;14506928;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A14180434-14180598%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A14506929-14507093&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPVVTLLFLLFLSTAVQSLHTLNDQISHFIVTKSKALEEDKDPFLPTEKETLKSSMILMRHLLMDAQVQR Same 465323 chr1:14180434-14180598+ 397 397 17 0 307 14180434 14180598 Best 414 414 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:14180434-14180598&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.460606060606 0.114583333333 24.67072 0.971 5.99175636364 18.6789636364 0.983438080101 0.949347290907 880 Best 880 880 45.7601927273 0.9003 8.74284727273 37.0173454545 0.967291526067 0.97618648446 1610 Best 1610 1610 0.0 0.0 coding exon(s) KAZN 5' extension 415 472436 chr1:53274696-53274821- NoOverlap chr1 53274696 53274821 - 6.54850964603 42 0.865995269703 -1.16679044139 7.71530008742 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;53274695;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A53274696-53274821-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A53274696-53274821&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.966034061133 1.01864726511 1.0558465298 53740368 53740493 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;53740367;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A53274696-53274821-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A53740368-53740493&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSQALSTLLSGPTESPCEGPRRFQCKSGKRVDGGKVCDVQRDCRDWSDELLKVWCGACLRPLAGLSLLPSPSWYLGSRPSSAPCPDTFCSDPLFGFMCRPMASHGAFRPQASGLHLYK Same 474313 chr1:53274696-53274821- 343 343 72 0 308 53274696 53274821 Best 415 415;5053;56664 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:53274696-53274821&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.595238095238 0.720588235294 5.53165714286 0.9787 -1.82691666667 7.35857380952 0.764353887685 1.0235017908 1812 Best 1812 1812;28108;61633 30.0248857143 0.9713 2.24328809524 27.781597619 1.01734981948 1.03380731752 815 Best 815 815;20948;44915 0.0 0.302832312483 chr19:11107392-11107514+ ENST00000480045.5,ENST00000306052.10,ENST00000465675.5 NC,CDSintron,UTR5intron pseudo-exon LRP8 pseudo-exon. 416 589094 chr9:68303896-68304099+ NoOverlap chr9 68303896 68304099 + 6.54807063083 68 0.600415135155 -0.402583810775 6.9506544416 ENST00000342833.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;68303895;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A68303896-68304099%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A68303896-68304099&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.868204489042 1.01862348144 1.05496525031 70918812 70919015 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;70918811;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A68303896-68304099%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A70918812-70919015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLASPPGGGCISFSIESIMQGVRGAGTGAAQNLSPTAWSYCHLLQRPSSLLHPQTAAPLLQVSAAAAARTILQQ Same 590040 chr9:68303896-68304099+ 495 495 -79 0 309 68303101 68304252 Best 416 416;11070;41191 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:68303101-68304252&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.622549019608 0.760059612519 8.05351617647 0.8286 -4.25201323529 12.3055294118 0.99318217048 1.03368519183 798 Best 798 798;1523;53518 6.51195588235 0.7184 -12.0943279412 18.6062838235 0.894326604748 1.08301997479 2132 Best 2132 2132;2152;49028 0.955258331866 chr9:41127130-41128383- 0.857089402624 chr9:65737146-65738396+ ENST00000342833.3 CDS not annotated FOXD4L3 contains a frameshift relative to its presumptive parent gene FOXD4, resulting in a terminal 55aa region that is potentially translated in a different frame. FOXD4L6 has been maintained as protein-coding at the present time due to published evidence for its functionality, although the evidence presented is not unequivocal and it is possible that the gene is pseudogenic. See also FOXD4L6. 417 591959 chr9:41127236-41127439- NoOverlap chr9 41127236 41127439 - 6.54807063083 68 0.600415135155 -0.402583810775 6.9506544416 ENST00000622588.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;41127235;204;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41127236-41127439-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A41127236-41127439&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.868204489042 1.01862348144 1.05496525031 70919015 70918812 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;70919014;-202;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41127236-41127439-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A70919015-70918812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLASPPGGGCISFSIESIMQGVRGAGTGAAQSLSPTAWSYCHLLQRPSSLLHPQTAAPLLQVSAAAAARTILQQ Same 592913 chr9:41127236-41127439- 496 496 -79 0 310 41127083 41128234 Best 417 417;11071;41192 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:41127083-41128234&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.627450980392 0.74780058651 8.21645147059 0.7911 -3.69409852941 11.91055 1.00012408013 1.0414792012 738 Best 738 738;1702;54069 6.89208235294 0.7326 -11.9803088235 18.8723911765 0.90492771772 1.08317546847 2080 Best 2080 2080;2940;51587 1.00041631046 chr9:68302952-68304205+ 0.829585778093 chr9:68302952-68304205+ ENST00000622588.1,ENST00000617940.1 CDS,AntiNCintron not annotated FOXD4L6 contains a frameshift relative to its presumptive parent gene FOXD4, resulting in a terminal 55aa region that is potentially translated in a different frame. FOXD4L6 has been maintained as protein-coding at the present time due to published evidence for its functionality, although the evidence presented is not unequivocal and it is possible that the gene is pseudogenic. See also FOXD4L3. 418 539234 chr2:73080814-73080906- NoOverlap chr2 73080814 73080906 - 11.1175386387 31 0.871316730533 4.18359032129 6.93394831736 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;73080813;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73080814-73080906-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A73080814-73080906&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05293339476 1.01841722651 1.02915175296 73307942 73308034 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;73307941;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73080814-73080906-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A73307942-73308034&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELPAPEVEAGQSPADSGTSLFSSPEVISVWERLPGPESAAEGQDDESSR Same 540612 chr2:73080814-73080906- 341 341 77 0 311 73071669 73081530 Best 418 418;1129;1310;1891;4235;7622;14465;18194;23824;54581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:73071669-73081530&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.602150537634 0.248663101604 18.1257193548 0.995 7.58943225806 10.5362870968 1.05896043344 1.04313216082 166 Best 166 166;734;1495;1711;1973;3802;9955;14922;47668;73713 10.251683871 0.4453 -2.78068387097 13.0323677419 0.704300481644 0.945272846786 2797 2300 2300;2572;2797;3173;3182;4993;30735;31537;41635;57875 0.0 0.0 ENST00000258098.6,ENST00000482554.5 CDSintron,NCintron coding exon(s) RAB11FIP5 2kb cassette exon 419 471894 chr1:41628751-41628840- NoOverlap chr1 41628751 41628840 - 12.9371700207 30 0.856117087561 4.31377342939 8.62339659135 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;41628750;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A41628751-41628840-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A41628751-41628840&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03676843315 1.01810389321 1.05207191373 42094422 42094511 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;42094421;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A41628751-41628840-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A42094422-42094511&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WRVAAVGVDMNAGFQREQRFSFGHRKWCLQHR Same 473773 chr1:41628751-41628840- 364 364 55 0 312 41628751 41628840 Best 419 419 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:41628751-41628840&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.512333965844 13.5959233333 0.9851 7.17287333333 6.42305 0.969131486142 0.899661620924 971 Best 971 971 13.5959233333 0.3079 7.17287333333 6.42305 0.450009546941 0.704644072817 3732 Best 3732 3732 0.0 0.0 ENST00000247584.6 UTR5 protein-coding gene protein-coding gene ENSG00000284895 420 488025 chr11:57311253-57311354- NoOverlap chr11 57311253 57311354 - 12.4540529532 34 0.620737459552 0.364082459141 12.089970494 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57311252;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57311253-57311354-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57311253-57311354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00920699207 1.01796750722 0.989254415981 57078727 57078828 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;57078726;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57311253-57311354-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A57078727-57078828&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAMAQPGDGEASMSILERLLANAALRDEAGRLRSPEPRALPPTR Same 490002 chr11:57311253-57311354- 457 457 -37 0 313 57311253 57325012 Best 420 420;26049;37506;38602;56204;62136;67693 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57311253-57325012&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.696078431373 0.414634146341 24.0305058824 0.9217 2.63318235294 21.3973235294 1.04127801953 0.972659698001 350 Best 350 350;18491;26361;26744;31724;56961;64998 25.2243176471 0.4475 -1.24169117647 26.4660088235 1.08649198943 1.04507188766 95 Best 95 95;24389;32606;41333;44558;50337;51620 0.0 0.148142238254 chr11:57312534-57313889- ENST00000530920.1,ENST00000358252.7,ENST00000528882.5 NC,CDSintron,NCintron coding exon(s) TNKS1BP1 first exon 421 485375 chr11:70365343-70365438+ NoOverlap chr11 70365343 70365438 + 11.4060094003 32 0.809244106203 4.95206875261 6.45394064765 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;70365342;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A70365343-70365438%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A70365343-70365438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05299966932 1.01775148666 1.0131456073 70211449 70211544 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;70211448;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A70365343-70365438%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A70211449-70211544&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SELCLLGPFSVPVAYACAPLLFVTASLALDVVGALGSP*TTGNVWLTHEEMETLAATPQTVSHAPQPALLPAR Same 487331 chr11:70365343-70365438+ 363 363 58 10 314 70365343 70365973 Best 421 421;4052 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:70365343-70365973&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.541666666667 0.863568215892 12.573265625 0.8956 5.711803125 6.8614625 0.891433306748 0.939071648588 1317 Best 1317 1317;3310 23.527396875 0.9512 4.319825 19.207571875 0.990831072512 1.02701407728 1266 Best 1266 1266;2959 0.0 0.193401528144 chr1:203060970-203061032+ ENST00000530548.5,ENST00000253925.11,ENST00000532504.5 NC,CDSintron,NCintron coding exon(s) PPFIA1 2 cassette exons 422 468534 chr1:202825246-202825431+ NoOverlap chr1 202825246 202825431 + 6.7145016924 62 0.776741558931 -5.46677421448 12.1812759069 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;202825245;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A202825246-202825431%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A202825246-202825431&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.955584712438 1.01741877929 0.904049055822 202794374 202794559 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;202794373;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A202825246-202825431%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A202794374-202794559&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QWGISSVQQGDGSSLLYTLVSLFRVSSKAEQKRLTVLVHLADSDLTWLRETLAHISSLFSPQILKGQLLLIHASSDAYPTVESIR Same 470406 chr1:202825246-202825431+ 327 327 95 0 315 202825246 202828148 Best 422 422;1273;1512;62190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:202825246-202828148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.521505376344 0.331846565566 15.2667451613 0.9195 -4.20346129032 19.4702064516 0.97087768372 0.95665122984 959 Best 959 959;1457;2051;22050 42.4594903226 0.9688 -3.62976612903 46.0892564516 0.985432365055 0.973764906217 1340 Best 1340 1340;1481;1898;14788 0.0 0.29479559746 chr12:85979289-85980430- ENST00000330493.6 NC pseudogene unitary pseudogene ENSG00000184774 423 561219 chr4:17875150-17875293- NoOverlap chr4 17875150 17875293 - 5.69575214386 48 0.861464293889 -2.63037497892 8.32612712278 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17875149;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17875150-17875293-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17875150-17875293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.885223931711 1.01728095719 1.04494211049 17876773 17876916 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17876772;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17875150-17875293-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17876773-17876916&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NIIRPNQKPLAISRKPGRPAKVKISGISVTINRTSPQEREVSISSCLPPLEQDNTSGK Same 562210 chr4:17875150-17875293- 334 334 89 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.320355951057 11.7082604167 0.9934 -2.96933958333 14.6776 1.05019300274 0.97510700843 260 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 29.29925 0.8703 -1.95629791667 31.2555479167 0.992346880223 0.995428427818 1235 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 424 485902 chr11:111255991-111256092+ NoOverlap chr11 111255991 111256092 + 12.3003236792 34 0.707103074693 5.88820575441 6.41211792476 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111255990;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111255991-111256092%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111255991-111256092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04692516364 1.01726016311 1.01636825437 111126716 111126817 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111126715;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111255991-111256092%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111126716-111126817&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPGDYSKRVYQGVRVKHTVKDLLAEKRSGQTSNSRLNVSPNLIYSEVLAGSLSSPFIHTPITYFLGLVFSK Same 487860 chr11:111255991-111256092+ 394 394 30 0 316 111255991 111256092 Best 424 424 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111255991-111256092&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.441176470588 0.612 22.1192 0.9994 11.1838911765 10.9353088235 1.04481005395 1.04552256887 311 Best 311 311 49.2096264706 0.8038 20.6811558824 28.5284705882 0.967395028052 1.05059477137 1609 Best 1609 1609 0.0 0.0 ENST00000280325.4 UTR5 coding exon(s) C11orf53 5' extension by two exons 425 588886 chr9:35841527-35841790+ NoOverlap chr9 35841527 35841790 + 10.3859398002 88 0.923632410163 4.87514317137 5.51079662881 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35841526;264;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35841527-35841790%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35841527-35841790&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01666426012 1.01714812065 1.02924113202 35841524 35841787 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35841523;264;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35841527-35841790%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35841524-35841787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFVPSFTYRVSAQLVCVGGRGVSACPLSLRLRPKAPPLHNSSSVACGGASGCQLELALPPWGHWVYVRVETSSRGPGRTIRFQLCVRLQGQNPCICPSLCR Same 589830 chr9:35841527-35841790+ 371 371 54 0 277 35829249 35842438 362 362;425;536;1007;2241;12378;33483;41023;50301;66958 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35829249-35842438&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.636363636364 0.2993621545 14.6947181818 0.9999 5.54979431818 9.14492386364 1.02025159335 1.04416831314 572 527 527;571;572;815;1277;3226;54814;57000;63888;72554 27.6967181818 0.7876 4.12101136364 23.5757068182 1.00586817807 1.04512327611 1017 753 753;986;1017;1241;1441;19083;51774;53783;58586;72919 0.0 0.173848278891 chr16:376544-376812- ENST00000377988.6,ENST00000464519.6,ENST00000473947.1 UTR5,NC,NCintron coding exon(s) TMEM8B 5' extension by 5 exons 426 561024 chr4:6070061-6070162- NoOverlap chr4 6070061 6070162 - 15.4940912075 34 0.646967269398 3.80901472972 11.6850764778 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;6070060;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6070061-6070162-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A6070061-6070162&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02157699926 1.01649489524 1.02643497679 6071788 6071889 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;6071787;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6070061-6070162-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A6071788-6071889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AHAQGLVCLQLHATMEYVLFVLYFSFFLCLCALVCLYFSGCQEMTYKHEGR Same 562014 chr4:6070061-6070162- 399 399 27 0 317 6070061 6070162 Best 426 426 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:6070061-6070162&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.480392156863 0.0 23.9995941176 0.821 3.42102058824 20.5785735294 0.994833977674 0.977204129989 791 Best 791 791 47.5534058824 0.8508 6.91968823529 40.6337176471 0.994493043781 0.994563356987 1203 Best 1203 1203 0.0 0.0 ENST00000282924.9,ENST00000457227.2 CDSintron,NCintron protein-coding gene protein-coding gene ENSG00000284684 427 530379 chr19:17390521-17390628- NoOverlap chr19 17390521 17390628 - 14.6411472286 36 0.58767367734 6.22321109308 8.4179361355 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;17390520;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A17390521-17390628-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A17390521-17390628&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00672851454 1.01645256279 1.05441988406 17501330 17501437 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;17501329;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A17390521-17390628-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A17501330-17501437&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTAPFPLPGSNVLEAEMSPQRRVPRPRPRSGSRPRPSPRSRSRSGPSGGCRRPARR Same 531842 chr19:17390521-17390628- 401 401 26 0 95 17390521 17394161 112 112;295;427;572;1325 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:17390521-17394161&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.851851851852 1.04499274311 24.1959666667 0.916 9.62483611111 14.5711305556 1.03122849836 1.04318914328 465 208 208;465;468;696;802 21.6642416667 0.3544 8.84540277778 12.8188388889 0.949845078178 0.921345796112 1818 577 577;1818;2051;2874;2932 0.0 0.0 protein-coding gene protein-coding gene ENSG00000269720 428 581688 chr7:90319404-90319679- NoOverlap chr7 90319404 90319679 - 7.71542060877 92 0.898288335805 1.03459460829 6.68082600048 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;90319403;276;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A90319404-90319679-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A90319404-90319679&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03097493068 1.01639002311 1.05334265733 89948718 89948993 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;89948717;276;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A90319404-90319679-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A89948718-89948993&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WFYLHLGCMMLINLVNADFEFQKGVLASISPGITKDIDLQCWKACSLTLIDLKELKIEHNVDAFWNFMLFLQKSQRPGHYNVFLNIAQDFWDMYVDCLLSRSHGMGRR Same 582647 chr7:90319404-90319679- 316 316 112 0 318 90319404 90319679 Best 428 428 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:90319404-90319679&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.420289855072 0.0826594788859 9.39535543478 0.9651 0.223189130435 9.17216630435 1.02266573744 1.05804667476 552 Best 552 552 18.2896271739 0.7126 -1.35413804348 19.6437652174 1.0244186319 1.04975080559 708 Best 708 708 0.0 0.0 ENST00000445784.1 AntiNCintron protein-coding gene protein-coding gene ENSG00000283267 429 503444 chr14:23101289-23101393- NoOverlap chr14 23101289 23101393 - 7.59903707414 35 0.94001591298 -0.604517162698 8.20355423684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23101288;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23101289-23101393-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23101289-23101393&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.999329766422 1.0162118869 1.05457231208 23570498 23570602 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23570497;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23101289-23101393-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23570498-23570602&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAELMGRCYLHQCTGRGAYKVQVEGSPWVPCLPGKVIQVGTIR Same 505283 chr14:23101289-23101393- 451 451 -22 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.571428571429 0.243055555556 10.2588685714 0.9757 -1.95974857143 12.2186171429 1.0249732887 1.05434320454 528 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 22.4392942857 0.6206 0.946665714286 21.4926285714 1.09580976423 1.04846188231 62 Best 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0613692553648 chr19:14434598-14434654+ protein-coding gene protein-coding gene ENSG00000283654 430 485929 chr11:111454244-111454366+ NoOverlap chr11 111454244 111454366 + 5.70870488682 41 0.779461728698 -3.10617803928 8.8148829261 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111454243;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111454244-111454366%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111454244-111454366&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.803715604819 1.01612281152 1.04081212788 111324969 111325091 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111324968;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111454244-111454366%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111324969-111325091&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFFPPTPTGGSWEAEEQVDLEWFDTEAFFGDCLRQSLSVTAKLSHTKEEVTGSSR Same 487887 chr11:111454244-111454366+ 374 374 56 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.552845528455 0.111111111111 8.79776829268 0.9712 -4.46252195122 13.2602902439 1.03774839218 1.02875071205 390 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 26.6814170732 0.768 -4.24058536585 30.922002439 1.01511923589 0.997185939782 847 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000528953.1,ENST00000525890.1 NC,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 431 559044 chr4:55837085-55837348+ NoOverlap chr4 55837085 55837348 + 10.0148124783 88 0.860690852216 3.85466590371 6.16014657457 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;55837084;264;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A55837085-55837348%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A55837085-55837348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02606320568 1.01585468028 1.04481651558 56703251 56703514 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;56703250;264;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A55837085-55837348%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A56703251-56703514&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IMSLILFQDNPFFDLHFKKVYSLEAYSCASKYAFARTVNKLNHAYLKKDLQIVNFDSTYINDDSIWSSNNKDCLVLMRICFYAFNLVCLSLCPLPL Same 560029 chr4:55837085-55837348+ 391 391 40 0 106 55820027 55837348 126 126;431;821 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:55820027-55837348&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.375 0.434567901235 18.0767318182 0.9827 7.65283295455 10.4238988636 0.988319302326 1.0407200067 846 476 476;785;846 37.2596818182 0.8475 6.85413409091 30.4055477273 1.00597788854 1.03593301129 1015 20 20;1015;1453 0.0 0.0 ENST00000504250.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 432 494063 chr12:2726741-2726992- NoOverlap chr12 2726741 2726992 - 7.26975360211 84 0.578391045134 1.55751311451 5.7122404876 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2726740;252;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2726741-2726992-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2726741-2726992&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.971604723816 1.01564390861 1.04021399683 2835907 2836158 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2835906;252;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2726741-2726992-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2835907-2836158&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLYCTLWPATSGYYIG*QLWFGLIAMYGVVGYVVHVPWTTTREDSQCPGKITYPCLMEYFEKKFGNPIMGIWYFFLFTVLLFLMEFMAQLWHKQDEGE Same 496057 chr12:2726741-2726992- 412 412 20 7 179 2726421 2727050 216 216;432;1226;2632;8002 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2726421-2727050&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.456349206349 0.152542372881 5.15490952381 0.4855 -3.55940952381 8.71431904762 0.744380555807 1.06600420499 1901 Best 1901 1901;3324;5423;5720;8206 15.5027690476 0.4209 -2.9453952381 18.4481642857 0.935713816135 1.04975313919 1907 333 333;1730;1907;2558;2603 0.0 0.0 pseudogene gap junction beta family pseudogene (ENSG00000283587) 433 549334 chr22:50678585-50678692+ NoOverlap chr22 50678585 50678692 + 10.2609167182 36 0.703207785492 3.47120552344 6.78971119473 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50678584;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50678585-50678692%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50678585-50678692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0350432001 1.01556409568 1.0401687159 51117013 51117120 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51117012;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50678585-50678692%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51117013-51117120&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPVFQANLKKFMDYVQLHSTDKVARLLDKGLDPNFHDPDSGGEEWSR None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.574074074074 0.449531737773 15.2700111111 1.0 3.46771666667 11.8022944444 1.06994880652 1.05419064989 83 Best 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 43.7127472222 0.9886 1.00548055556 42.7072666667 0.959948099809 0.968772524569 1699 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.334875463394 chr19:50714182-50714290- ENST00000262795.5 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 434 491095 chr12:40431632-40431721+ NoOverlap chr12 40431632 40431721 + 14.2073832812 30 0.869901579309 4.95494329532 9.25243998592 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40431631;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40431632-40431721%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40431632-40431721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03264629528 1.01513900694 1.05059403149 40825434 40825523 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40825433;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40431632-40431721%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40825434-40825523&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFNEIHFLQNEDWSISVELRPCPSGQTGTCLNSVTLLLNSVSNK Same 493072 chr12:40431632-40431721+ 378 378 56 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.455555555556 0.861244019139 21.4874533333 0.9827 5.94875666667 15.5386966667 1.04422159111 1.03303217885 319 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 25.13159 0.5274 6.53850333333 18.5930866667 1.07626954035 1.01245323546 140 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 435 558082 chr3:195908782-195908916- NoOverlap chr3 195908782 195908916 - 9.970459946 45 0.751720115629 5.15929765536 4.81116229064 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;195908781;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195908782-195908916-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A195908782-195908916&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06641938028 1.01503932976 0.971366211352 195635653 195635787 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;195635652;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195908782-195908916-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A195635653-195635787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SRPELVGRARPVGPRGPAGEGRLGVQEANWLPGVQEGQVVRAVQETYLNGK Same 559056 chr3:195908782-195908916- 387 387 48 0 319 195908695 195909767 Best 435 435;1687;7715;11110;49936;55625;56550 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:195908695-195909767&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 0.551020408163 21.6569977778 0.9045 11.2321511111 10.4248466667 1.03917297594 1.04513357814 374 Best 374 374;1346;2237;3722;53564;66857;67033 16.0419022222 0.6168 7.50419555556 8.53770666667 0.84612938252 0.829827215256 2327 Best 2327 2327;2340;2709;4762;21424;33118;65052 0.0 0.0725437126753 chr10:98262743-98263019- ENST00000333602.10,ENST00000468819.1,ENST00000458180.1 UTR5,NCintron,AntiNCintron under investigation TNK2 contains a series of NPRs in its 5' UTR that highlight a reading frame and STOP codon that are conserved in placental mammals, although no ATG initiation codon has been identified. However, a [CTG] codon has been identified that corresponds well to the 5' end of the NPR region and a consistent initiation codon peak in ribosome profiling data, giving a prospective 153aa single exon CDS [chr3:195909582-195908695]. 436 520317 chr17:7915866-7916216- NoOverlap chr17 7915866 7916216 - 8.22929914499 117 0.683047683139 3.95423929482 4.27505985017 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7915865;351;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7915866-7916216-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7915866-7916216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0099781871 1.01473483338 0.950109763325 7819184 7819534 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7819183;351;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7915866-7916216-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7819184-7819534&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSDVLESAAGTMQLLVRVPSLPERGELDCNICYRPFNLGCRAPRRLPGTARARCGHTICTACLRELAARGDGGGAAARVVRLRRVVTCPFCRAPSQLPRGGLTEMALDSDLWSRLEEKARAK Same 521727 chr17:7915866-7916216- 232 232 204 0 320 7909339 7916216 Best 436 436;1938;4281;5688;13182;72031;73071;73673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7909339-7916216&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.740740740741 1.16335227273 13.2005478632 0.8323 5.4100957265 7.79045213675 1.04137663743 1.00383676112 349 Best 349 349;1564;1761;1828;15031;19061;29084;43318 10.8900846154 0.4354 2.81362051282 8.07646410256 0.693343494853 0.82200237832 2836 Best 2836 2836;3263;3677;4021;11908;12386;65199;71655 0.0 0.0 ENST00000324348.7 NC protein-coding gene protein-coding gene ENSG00000179859 437 582270 chr7:114629847-114629963- NoOverlap chr7 114629847 114629963 - 6.59797173586 39 0.904926512159 -1.47148716946 8.06945890532 ENST00000350908.8,ENST00000360232.8,ENST00000378237.7,ENST00000390668.3,ENST00000393489.7,ENST00000393491.7,ENST00000393494.6,ENST00000393498.6,ENST00000403559.8,ENST00000408937.7,ENST00000452963.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;114629846;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114629847-114629963-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A114629847-114629963&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.959169259643 1.01466122352 1.05438317435 114269902 114270018 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;114269901;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114629847-114629963-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A114269902-114270018&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLQKLKM Same 583231 chr7:114629847-114629963- 414 414 23 0 321 114629847 114631629 Best 437 437;4220;35515;64095;71246 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:114629847-114631629&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.521367521368 0.0 9.55058205128 0.8795 -4.88193589744 14.4325179487 1.03375878907 1.00155814849 434 Best 434 434;2787;4466;37278;71967 15.3128871795 0.717 -11.6346923077 26.9475794872 1.04659489184 1.02050104173 378 Best 378 378;3418;5157;5827;54610 0.0 0.0 ENST00000350908.8,ENST00000412402.5,ENST00000393495.7 AntiCDS,AntiNC,AntiCDSintron not annotated low complexity region 438 510112 chr15:98446010-98446129- NoOverlap chr15 98446010 98446129 - 7.82895755246 40 0.849301899748 1.41588247269 6.41307507977 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;98446009;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A98446010-98446129-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A98446010-98446129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04566778263 1.01445418333 1.03841978596 98989239 98989358 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;98989238;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A98446010-98446129-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A98989239-98989358&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLLPVCRQFLLVCLEERGRLWEVERRGAWGQCTNIWLKVQLHQAR Same 511847 chr15:98446010-98446129- 360 360 78 0 322 98446010 98446129 Best 438 438 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:98446010-98446129&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.641666666667 0.340425531915 11.96045 0.9614 -2.24616 14.20661 1.06518012098 1.00512887218 107 Best 107 107 28.56363 0.8045 -2.8579525 31.4215825 1.0077870783 1.00144365541 984 Best 984 984 0.0 0.0 ENST00000332908.5 CDSintron pseudogene FAM169B (ENSG00000283597) changed from protein-coding to pseudogene based on pseudo exons 439 527276 chr19:12688049-12688144+ NoOverlap chr19 12688049 12688144 + 12.4320689011 32 0.7552004654 5.80281244218 6.62925645895 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12688048;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12688049-12688144%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12688049-12688144&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0426086447 1.01434338503 1.01607479878 12798863 12798958 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12798862;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12688049-12688144%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12798863-12798958&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWACCPRPAHFTQMSSKVAINSDIGQALWAVEQLQMEAGIDQVKVR Same 528722 chr19:12688049-12688144+ 398 398 41 0 239 12688049 12699291 306 306;439;71391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12688049-12699291&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.59375 0.122762148338 17.990178125 0.9398 6.394959375 11.59521875 1.03621375474 1.05451273899 404 217 217;404;15139 30.1602625 0.7004 2.037603125 28.122659375 1.04693849414 1.04628334325 371 Best 371 371;1282;33773 0.0 0.264625244682 chr1:67707594-67707686- ENST00000587296.1 AntiNC protein-coding gene protein-coding gene ENSG00000283980 440 491105 chr12:40441870-40442010+ NoOverlap chr12 40441870 40442010 + 12.5411381829 47 0.795133345995 0.494359606124 12.0467785768 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40441869;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40441870-40442010%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40441870-40442010&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02015503481 1.01420005567 0.948176101523 40835672 40835812 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40835671;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40441870-40442010%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40835672-40835812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YNHYTLSFFPFSTCIKGSWSCTQNECQTICHIYGEGHVRTFDGKSYSFDGLCQYSFLEVIMSMSY Same 493082 chr12:40441870-40442010+ 396 396 44 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.418439716312 0.165882352941 17.8952978723 0.9827 0.583317021277 17.3119808511 0.992333282991 0.951926455957 812 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 39.6877659574 0.9713 -14.5230276596 54.210793617 0.991725828432 1.00123076466 1249 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.262450391069 chr11:1176928-1177066+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 441 516717 chr17:19580237-19580344+ NoOverlap chr17 19580237 19580344 + 15.6030942914 36 0.62188398057 2.05982776814 13.5432665232 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;19580236;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A19580237-19580344%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A19580237-19580344&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02084602624 1.01393990968 0.996119258759 19483550 19483657 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;19483549;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A19580237-19580344%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A19483550-19483657&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALLSAPPQFLAQLMIFIISLVSSIFCGHLGKVEPDAVTLAVTVGA Same 518099 chr17:19580237-19580344+ 407 407 34 0 323 19580044 19580344 Best 441 441;26442 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:19580044-19580344&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.979838709677 28.2569472222 0.8972 6.31208888889 21.9448583333 1.03423267789 0.996446377839 428 Best 428 428;20839 54.6571694444 0.8187 8.47699444444 46.180175 1.02009556314 0.989345511445 786 Best 786 786;12650 0.18350071132 chr17:19542393-19542494+ 0.427860309896 chr17:19715116-19715217- ENST00000420951.1,ENST00000574267.1 NC,AntiNCintron pseudogene extension SLC47A1P1 pseudogene extended (ENSG00000228983) 442 586302 chr8:30874954-30875103- NoOverlap chr8 30874954 30875103 - 10.3795840479 50 0.929701991302 -1.62081403702 12.000398085 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;30874953;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A30874954-30875103-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A30874954-30875103&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0331200685 1.01391201569 0.928234490484 30732470 30732619 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;30732469;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A30874954-30875103-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A30732470-30732619&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IQLLSLFLPLVYLSPCYTNSREYSFIHDTLNQCRLDVNCDLQSLWQFGDTKLVHNEELEK Same 587241 chr8:30874954-30875103- 437 437 5 0 38 30849192 30875103 41 41;442;759;1484;2461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:30849192-30875103&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.386666666667 0.183823529412 12.99609 0.9958 -2.529196 15.525286 1.02525710743 0.955744593687 522 108 108;522;666;1448;1996 19.670728 0.6692 -6.417734 26.088462 1.0404808343 1.02068192536 472 180 180;472;1139;2145;2387 0.0 0.0 ENST00000523186.5 NC coding exon(s) TEX15 5' extended 443 500285 chr13:98854585-98854737- NoOverlap chr13 98854585 98854737 - 11.9120705502 51 0.883532074614 2.75933154307 9.1527390071 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;98854584;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98854585-98854737-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A98854585-98854737&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.993375391048 1.01382685183 1.01318379857 99506839 99506991 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;99506838;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98854585-98854737-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A99506839-99506991&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EKLLRRHSACVIRSAEEEEESCQSARKNRVTVDFSLLMIPPLPEETLNATPSLPLPEVLSSPVALIK Same 502298 chr13:98854585-98854737- 375 375 68 0 324 98845373 98854737 Best 443 443;73619 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:98845373-98854737&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.516339869281 0.295366795367 18.0083803922 0.9897 4.97557843137 13.0328019608 0.976568677465 1.01746600161 921 Best 921 921;61451 22.8583490196 0.8361 -0.579366666667 23.4377156863 1.02977096829 1.04080799213 625 Best 625 625;46026 0.0 0.0 ENST00000339416.6,ENST00000472874.1 CDSintron,NCintron coding exon(s) DOCK9 cassette exon 444 468860 chr1:211941869-211941904+ NoOverlap chr1 211941869 211941904 + 5.23544162015 12 0.913811957987 -12.1308751479 17.366316768 ENST00000366992.7,ENST00000366993.7,ENST00000366994.7,ENST00000440600.6,ENST00000612340.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;211941868;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A211941869-211941904%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A211941869-211941904&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00315122697002 1.01375876895 0.942096473987 212115211 212115246 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;212115210;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A211941869-211941904%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A212115211-212115246&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLLGLLLL*ANLLGIR Same 470738 chr1:211941869-211941904+ 436 436 8 4 325 211941869 211941904 Best 444 444 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:211941869-211941904&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.428571428571 5.79706666667 0.8865 -15.9464833333 21.74355 0.387152864502 0.945941930806 4169 Best 4169 4169 4.588775 0.9448 -34.88455 39.473325 0.502111813811 0.878908077505 3526 Best 3526 3526 0.0 0.0 ENST00000366992.7,ENST00000469606.5 AntiCDS,AntiNC not annotated potentially spurious 445 539283 chr2:74426653-74426760- NoOverlap chr2 74426653 74426760 - 7.84223888732 36 0.827047040174 0.41070287923 7.43153600809 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;74426652;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A74426653-74426760-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A74426653-74426760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01500709856 1.0137445166 1.05372047487 74653780 74653887 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;74653779;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A74426653-74426760-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A74653780-74653887&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FHFLLLVSSPTSAPHSSPSHPHLPCAPCPTVLSEPVAPGGPGEGLLLQDNAISTEIQALLSSYYSDR Same 540661 chr2:74426653-74426760- 369 369 76 0 326 74421730 74426760 Best 445 445;13626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:74421730-74426760&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.564814814815 0.116379310345 11.9805388889 0.9862 1.71875 10.2617888889 1.04517040866 1.05565988192 309 Best 309 309;46513 28.9371916667 0.831 9.26210833333 19.6750833333 1.05241229627 1.02862500298 297 Best 297 297;49401 0.0 0.0 ENST00000233330.6,ENST00000492013.1 CDSintron,NCintron coding exon(s) RTKN 3' extension 446 573464 chr6:167996539-167996661+ NoOverlap chr6 167996539 167996661 + 6.12402199609 41 0.5591448993 -11.0505047677 17.1745267638 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;167996538;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167996539-167996661%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A167996539-167996661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.554010609981 1.01354575488 1.02271154133 168397219 168397341 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;168397218;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167996539-167996661%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A168397219-168397341&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLRPFVLSACQSKVAHLERALQDVSARHQLERQRRKVPHNSLVVGVGVR Same 574492 chr6:167996539-167996661+ 285 285 161 0 327 167976938 168002143 Best 446 446;1208;2908;3125;34549;35422;36527;37043;41869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:167976938-168002143&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.658536585366 0.555483870968 12.2013487805 0.6106 -12.1341121951 24.3354609756 0.935285403824 1.03636435665 1167 Best 1167 1167;2159;2163;3104;6372;25026;25456;26766;27130 12.9691170732 0.3832 -14.0652585366 27.0343756098 1.07695953252 1.01689558258 139 Best 139 139;2661;3543;3691;4447;13096;13690;18631;40134 0.0 0.146566666962 chr1:201206083-201213621+ ENST00000515361.5,ENST00000456585.5 NC,AntiNC pseudo-exon KIF25 has 8 exons upstream that are coding as part of this locus in other mammals. At least two of these exons are clearly pseudogenic. This suggests the locus may be a pseudogene, although it has been maintained as coding due to published experimental support for its functionality. 447 562331 chr4:106358309-106358437- NoOverlap chr4 106358309 106358437 - 6.81003944541 43 0.948868437068 -0.845560601977 7.65560004739 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;106358308;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A106358309-106358437-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A106358309-106358437&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.983100651964 1.01346944196 1.05490104292 107279466 107279594 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;107279465;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A106358309-106358437-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A107279466-107279594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FNSYLTSLFQELLGHAWMNYTAILFTHAEKIEEAGLTEDKYLHEASDTLKTLLNSIQHK Same 563326 chr4:106358309-106358437- 479 479 -32 0 260 106358309 106367411 338 338;447;953 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:106358309-106367411&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.395348837209 0.198461538462 7.18090232558 0.9713 -2.22531627907 9.40621860465 0.923165989779 1.07124537795 1221 180 180;1158;1221 14.0141325581 0.6819 -6.38425813953 20.3983906977 1.01869407172 1.05901352329 803 157 157;803;1966 0.0 0.0 ENST00000507153.1 NC protein-coding gene protein-coding gene ENSG00000250298 448 486536 chr11:125948304-125948417+ NoOverlap chr11 125948304 125948417 + 8.30148426639 38 0.735530632486 0.959636825823 7.34184744057 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125948303;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125948304-125948417%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125948304-125948417&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.993765364213 1.01338245956 1.05324334754 125818199 125818312 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125818198;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125948304-125948417%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125818199-125818312&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WTQLGVSWVCNNTAGLSLLWPVPVSKPQVRLSNPSPVEGASVVATCAVREGTEPVTFAWQHR Same 488498 chr11:125948304-125948417+ 415 415 33 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.558823529412 12.2906421053 0.8585 3.24698421053 9.04365789474 0.98104938874 1.03938472811 893 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 33.2935052632 0.7997 8.37075263158 24.9227526316 1.01214241134 1.05019056431 907 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0800769315263 chr19:51340433-51340726- protein-coding gene protein-coding gene ENSG00000283703 449 597382 chrX:149548419-149548478- NoOverlap chrX 149548419 149548478 - 3.02010503411 20 0.738580910964 -14.3157952212 17.3359002553 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;149548418;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149548419-149548478-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A149548419-149548478&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0542803473772 1.01325839907 0.91284912089 148629964 148630023 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;148629963;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149548419-149548478-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A148629964-148630023&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPLGNGPPQEPNGPSWEGTSGNVTFTSSATTWMEGTGILSSLVYSDNGSVMSLYNICYYALLASLSVMSPNEPSDDEEE Same 598032 chrX:149548419-149548478- 28 28 421 0 40 149548419 149549612 44 44;449;1374;8420 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:149548419-149549612&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.0 5.434865 0.6416 -12.44977 17.884635 0.519573318264 0.980758996292 3011 96 96;3011;3881;6198 4.016115 0.2884 -15.08487 19.100985 0.392794558105 1.05413635202 4004 1236 1236;2536;3537;4004 0.0 0.0 ENST00000431993.1,ENST00000422892.2 NC,AntiCDSintron protein-coding gene protein-coding gene ENSG00000283697 450 506518 chr15:42208311-42208337+ NoOverlap chr15 42208311 42208337 + 7.15873323547 9 0.944987835169 -14.4999995364 21.6587327719 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;42208310;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A42208311-42208337%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A42208311-42208337&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0348024392956 1.01323094764 1.01552461861 42500509 42500535 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;42500508;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A42208311-42208337%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A42500509-42500535&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRPGSGQEPPGYRPFNNTAIVNPGLPAS*ARLFR Same 508234 chr15:42208311-42208337+ 739 739 -289 4 328 42208311 42208337 Best 450 450 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:42208311-42208337&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.75 8.73056666667 0.992 -10.7363777778 19.4669444444 0.477432574508 0.980764416246 3292 Best 3292 3292 5.82392222222 0.4608 -14.7195222222 20.5434444444 0.260690136105 1.01552452667 5068 Best 5068 5068 0.0 0.0 ENST00000318006.9 AntiUTR5 not annotated putative regulatory region 451 539835 chr2:110027378-110027566- NoOverlap chr2 110027378 110027566 - 9.80539054826 63 0.605011983176 4.93897464765 4.86641590061 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110027377;189;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110027378-110027566-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110027378-110027566&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06070481857 1.01317584177 1.00197393918 110784955 110785143 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110784954;189;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110027378-110027566-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110784955-110785143&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AWPWTPWPTTHPSPLVSTPGWFCVSVAWTARPFNLDNYTSTNCLCPATATGEKCPAGSYCPEGSPEPMPCPPGSFCGTSGKDLSCCGLGCGWWENQCEGEHVTAIFPCPMR Same 541195 chr2:110027378-110027566- 435 435 16 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.619047619048 0.112835820896 14.5068428571 0.8014 7.12597460317 7.38086825397 1.0538455598 1.0073680322 212 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 39.3725380952 0.8614 17.8082047619 21.5643333333 0.973421131518 1.01612135493 1533 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 452 595512 chrX:111518858-111519127+ NoOverlap chrX 111518858 111519127 + 11.213556765 90 0.94603748633 5.490068889 5.72348787602 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;111518857;270;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A111518858-111519127%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A111518858-111519127&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01909870626 1.01298063607 1.03196521976 110762086 110762355 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;110762085;270;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A111518858-111519127%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A110762086-110762355&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VMMEAHFKYHGNLTGRAHFPTLATEVDTSSDKYSNLYMYVGLFLSLLAILLILLFTMLLRLKHVISPINSDSTESVPQFTDVEMQSRIPTP Same 596155 chrX:111518858-111519127+ 379 379 73 0 329 111518858 111519127 Best 452 452 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:111518858-111519127&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488888888889 0.326797385621 15.8487766667 0.9986 8.00839333333 7.84038333333 1.02222695915 1.0178147156 555 Best 555 555 32.7990311111 0.6474 11.7450122222 21.0540188889 0.966031420921 1.01900269796 1621 Best 1621 1621 0.0 0.0 ENST00000569275.1 NC protein-coding gene protein-coding gene ENSG00000260802 453 560094 chr4:139889906-139890016+ NoOverlap chr4 139889906 139890016 + 6.10721341742 37 0.675125526075 -3.84798105554 9.95519447296 ENST00000398940.1,ENST00000509479.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;139889905;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A139889906-139890016%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A139889906-139890016&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.688049508437 1.01280471879 1.01056715579 140811060 140811170 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;140811059;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A139889906-139890016%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A140811060-140811170&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLLLLLLLLLLLLLLLLLLLLLLLLLFLLHEFGPLLLLCSHLFELFCWR Same 561083 chr4:139889906-139890016+ 498 498 -45 0 330 139889906 139890016 Best 453 453 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:139889906-139890016&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.585585585586 0.0 6.43706216216 0.6685 -7.27738108108 13.7144432432 0.820072642338 1.03742378865 1598 Best 1598 1598 4.15197027027 0.5236 -16.1339756757 20.2859459459 0.830570228281 1.09866492257 2390 Best 2390 2390 0.0 0.0 ENST00000509479.6,ENST00000502696.1 AntiCDS,AntiCDSintron not annotated low complexity region 454 693194 chr3:113958541-113958627+ Extension chr3 113958541 113958627 + 11.9817551775 29 0.904941029142 1.76902760308 10.2127275744 chr3:113958361-113958627+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;113958540;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A113958541-113958627%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A113958541-113958627&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03016364692 1.01205874245 1.04253078028 113677388 113677474 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;113677387;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A113958541-113958627%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A113677388-113677474&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLCGLIVDTGQYNRGFLRNWHQFSTLGTRAFHHPAEDIV Same 693824 chr3:113958541-113958627+ 389 389 65 0 331 113947928 113958627 Best 454 454;61333 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:113947928-113958627&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.597701149425 0.400921658986 15.4402586207 1.0 2.49307586207 12.9471827586 1.05725097765 1.05268886125 181 Best 181 181;35772 33.1365344828 0.8618 -0.589248275862 33.7257827586 1.01337650076 1.02014325706 888 Best 888 888;41969 0.0 0.0 ENST00000330212.7,ENST00000488129.1,ENST00000478793.1 ExtensionMid,NC,NCintron coding exon(s) ZDHHC23 3' coding exon 455 473850 chr1:120557193-120558149- NoOverlap chr1 120557193 120558149 - 13.2324018962 319 0.814264841611 6.28956675935 6.94283513684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;120557192;957;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120557193-120558149-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A120557193-120558149&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.96771890965 1.01203964821 0.999499061821 144930758 144931714 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;144930757;957;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120557193-120558149-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A144930758-144931714&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EACHPLGGKMKEICRICARELCGNQRRWIFHTASKLNLQVLLSHVLGKDVPRDGKAEFACSKCAFMLDRIYRFDTVIARIEALSIERLQKLQLEKDRLKFCIASMYRKNNDDSGVEIKAGNGTVDMSVLPDARYSTLLQEDFAYSGFECWVENEDQIQEPHSCHGSEGPGNRPRRCRGCAALRVADSDYEAICKVPRKVARSISCGPSSRWSTSICAEEPALSEVGPPDLASTKVPPDGESMEEETPGSSVESLDASVQASPPQQEDEETERSAKELGKCDCCSDDQAPQHGCNHKLELALSMIKGLDYKPIQSPRGSRLPIPVKSSLPGAKPGPSMTDGVSSGFLNR Same 475729 chr1:120557193-120558149- 298 298 157 0 332 120557034 120558959 Best 455 455;1179;8132;9030 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:120557034-120558959&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.530825496343 0.630672189795 22.2436523511 0.9767 11.4432598746 10.8003924765 0.970707107859 0.968489409068 960 909 909;960;17149;46807 48.7654435737 0.9346 19.3334893417 29.431954232 0.964290880501 0.980915140082 1642 Best 1642 1642;2295;10626;64986 0.960823925446 chr1:148952781-148953905+ 0.992729688434 chr1:148952781-148953905+ ENST00000612480.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 456 506970 chr15:63600698-63601024+ NoOverlap chr15 63600698 63601024 + 7.53321010736 109 0.5561388515 2.85717800998 4.67603209738 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;63600697;327;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A63600698-63601024%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A63600698-63601024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.962409017952 1.01131898861 0.981543440684 63892897 63893223 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;63892896;327;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A63600698-63601024%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A63892897-63893223&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPNLASVTLSGCGHVTDDCLARLLRCCPRLRALRLENCARVTNRTLAAVAADGRALQTLHVDFCRNVSAAGLRRLRAACPRLALRAEHSAAMLPDQPPRPRAPAAALGK Same 508689 chr15:63600698-63601024+ 313 313 143 0 333 63600698 63601024 Best 456 456 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:63600698-63601024&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.77370030581 1.15957446809 10.0017036697 0.8115 1.96975779817 8.03194587156 1.01365517368 1.02499061863 624 Best 624 624 30.9881256881 0.8412 5.53581284404 25.452312844 1.04164265394 1.03038317363 455 Best 455 455 0.0 0.0 ENST00000534939.2,ENST00000360587.2,ENST00000560325.1,ENST00000560962.5,ENST00000561256.5 UTR3,CDSintron,UTR3intron,AntiNC,AntiNCintron coding exon(s) FBXL22 3' exon 457 579474 chr7:134208697-134208810+ NoOverlap chr7 134208697 134208810 + 11.2645789624 38 0.8215622026 7.38798696195 3.87659200046 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;134208696;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134208697-134208810%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A134208697-134208810&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07451642227 1.01111881504 0.864397369541 133893449 133893562 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;133893448;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134208697-134208810%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A133893449-133893562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LISFYIKAGAPASKKTVSGVPAHLVPSPRCLAKLQADGQMTEHLSGMQIHAK Same 580517 chr7:134208697-134208810+ 420 420 37 0 334 134208697 134210967 Best 457 457;654;903;1140;1971;3155;4173;9542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:134208697-134210967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.552631578947 0.229838709677 19.1616447368 0.9968 10.5677105263 8.59393421053 1.06061020369 1.01451559406 146 Best 146 146;1038;1039;1252;1266;1962;1997;10575 18.9336947368 0.3794 9.42255526316 9.51113947368 0.844589242712 0.837619336461 2334 15 15;2334;2668;2929;2944;3198;3972;9142 0.0 0.0 ENST00000285928.2 CDSintron coding exon(s) LRGUK alternative large final exon 458 479877 chr10:5158611-5158709- NoOverlap chr10 5158611 5158709 - 8.99624234619 33 0.621260903843 -3.38380009839 12.3800424446 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;5158610;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A5158611-5158709-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A5158611-5158709&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.857628716428 1.01111235118 0.953554776243 5200809 5200907 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;5200808;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A5158611-5158709-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A5200809-5200907&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQVECHPYLNQSKLLEFCKSKDIVLVAYSALGSQR Same 481785 chr10:5158611-5158709- 522 522 -64 0 335 5158611 5158709 Best 458 458 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:5158611-5158709&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.505050505051 0.0 10.611630303 0.607 -4.10092121212 14.7125515152 0.859421881752 1.01125273774 1431 Best 1431 1431 37.7833 0.7744 -4.14005454545 41.9233545455 1.03458388872 0.963116189596 569 Best 569 569 0.487294392327 chr10:4995756-4995865- 0.598038977028 chr10:4995756-4995865- ENST00000578467.2 NCintron pseudogene extension AKR1C8P pseudogene extended (ENSG00000264006) 459 485934 chr11:111456553-111456738+ NoOverlap chr11 111456553 111456738 + 7.69919353135 62 0.874341954681 -0.524016079643 8.22320961099 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111456552;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111456553-111456738%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111456553-111456738&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00389039371 1.01087328671 1.02826832056 111327278 111327463 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111327277;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111456553-111456738%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111327278-111327463&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGNDCFPAAPAGPPGADDISVNPVTKLMVPGPNSLMLPASGHAGSIPPGYFIHPDTGRVLPEAGHLGYDLLRATLVPTMDTNAGEPLAH Same 487892 chr11:111456553-111456738+ 348 348 111 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.612903225806 0.237851662404 11.0846645161 0.9651 -2.58806935484 13.672733871 1.0058722185 0.989561072838 679 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 25.4575370968 0.7596 -2.2941983871 27.7517354839 0.962008120571 1.01761495478 1674 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000528953.1,ENST00000527555.1 NC,NCintron pseudogene unitary pseudogene ENSG00000255093 460 546964 chr21:46326297-46326488+ NoOverlap chr21 46326297 46326488 + 9.55247339018 64 0.78109407187 3.90503895702 5.64743443317 ENST00000359568.9 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;46326296;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A46326297-46326488%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A46326297-46326488&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00527709757 1.01072874495 1.0321126317 47746211 47746402 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;47746210;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A46326297-46326488%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A47746211-47746402&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGQPSGLMVPTSLLTLWFCYFFLTYLCLYYLSTFLRSLLTSDREKQKVTVRIRRKRRRRGRARLSMRLSRRRVR Same 548381 chr21:46326297-46326488+ 409 409 51 0 336 46324103 46326488 Best 460 460;25634 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:46324103-46326488&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.46875 0.952380952381 13.020734375 0.9567 5.212940625 7.80779375 1.03163563164 1.02391230297 460 Best 460 460;42448 25.4452625 0.8258 9.9183453125 15.5269171875 1.0350224968 0.990410509276 558 Best 558 558;54217 0.0 0.0 ENST00000359568.9,ENST00000480896.5 CDS,NC under investigation Identifies a prospective 68aa single exon CDS at chr21:46,326,288-46,326,491, which overlaps with a coding exon of PCNT in a different frame. Conservation of the 68aa CDS is apparent across vertebrates, as is conservation of the PCNT exonic translation. There is currently no evidence to support the transcription of the 68aa CDS in human or mouse. The candidate ORF includes the variant RCV000147149, which is linked in ClinVar to Microcephalic osteodysplastic primordial dwarfism type II, a condition that develops in-utero. If the transcript is only be expressed in utero, that might explain the lack of support from existing transcription databases. 461 594613 chrX:12720824-12721129+ NoOverlap chrX 12720824 12721129 + 6.51250684948 102 0.897179175325 0.683379402348 5.82912744713 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;12720823;306;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A12720824-12721129%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A12720824-12721129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0124614085 1.01069614479 1.03639175738 12738943 12739248 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;12738942;306;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A12720824-12721129%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A12738943-12739248&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ERTKGAVSLKCPGITEAQEASSERRAELPLGRKLTKSFSQSSMHLSSEGRFHKRSPVAHKDSKLYRTLPLRKLEGSNWRCRGPFSYCFLNRGQDEDGEEEEER Same 595253 chrX:12720824-12721129+ 331 331 130 0 228 12717136 12721843 286 286;461;7085;22580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:12717136-12721843&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.529411764706 0.191489361702 8.79441568627 0.9598 2.62994313725 6.16447254902 1.00161746268 0.966118984979 724 475 475;724;3972;5318 18.3225245098 0.8776 -0.729902941176 19.052427451 1.05125757155 1.03952655297 309 Best 309 309;1117;2159;2328 0.0 0.0709461805885 chrX:107600303-107603373+ ENST00000380682.5 UTR3 coding exon(s) FRMPD4 3' extended final exon 462 555495 chr3:46719827-46719997- NoOverlap chr3 46719827 46719997 - 6.1282842358 57 0.898675008265 -10.8467981899 16.9750824257 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;46719826;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A46719827-46719997-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A46719827-46719997&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.934716133787 1.01058077236 1.08545847996 46761317 46761487 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;46761316;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A46719827-46719997-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A46761317-46761487&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DALLLPSLCPPSFSLQVDSGSSLVCQMDKTWIQIGVVSWSFSCGQRHFPGIYTSTAHFNQWIRTEVANIRFISRAGPAFLSPVFLTGYILLGSLSSLWLL Same 556449 chr3:46719827-46719997- 468 468 -6 0 337 46719752 46719997 Best 462 462;11999 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:46719752-46719997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.514619883041 0.0883720930233 11.1284035088 0.9925 -15.1574210526 26.2858245614 1.05746923729 1.22404853842 178 Best 178 178;9053 18.1891280702 0.5524 -18.0030859649 36.1922140351 0.979790854145 0.847135333964 1425 Best 1425 1425;22881 0.0 0.182751552908 chr16:31143588-31143837- ENST00000460241.1,ENST00000463091.2 UTR5,UTR3 pseudogene unitary pseudogene ENSG00000261603 463 484452 chr11:57038336-57038422+ NoOverlap chr11 57038336 57038422 + 10.9114758064 29 0.927579629732 1.48075513182 9.43072067458 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57038335;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57038336-57038422%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57038336-57038422&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02634805787 1.01039563636 1.0511639946 56805811 56805897 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;56805810;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57038336-57038422%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A56805811-56805897&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INESQKQEKVASVFYGIIIPMLNPLIYSQRNQDVIEAIK Same 486397 chr11:57038336-57038422+ 405 405 58 0 338 57037567 57038422 Best 463 463;582;884;1044;1236;1826;3363;6311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57037567-57038422&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.379310344828 0.0 16.8605034483 0.9743 3.9965 12.8640034483 1.04168917225 1.05326643478 346 Best 346 346;643;688;1159;1835;1855;2138;3085 37.8993758621 0.8838 -7.74361034483 45.6429862069 1.01943174524 0.955552345406 792 Best 792 792;938;1237;1246;1582;1841;2263;2401 0.0984172070164 chr11:56988914-56989843+ 0.267800813142 chr7:141918876-141919820+ pseudogene OR5AK4P olfactory receptor family 5 subfamily AK member 4 pseudogene (ENSG00000283307) 464 478916 chr10:113129859-113129936+ NoOverlap chr10 113129859 113129936 + 7.84752702255 26 0.915979130353 -3.76508456125 11.6126115838 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113129858;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113129859-113129936%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113129859-113129936&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.872671519923 1.01029734211 0.996235209098 114889618 114889695 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114889617;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113129859-113129936%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114889618-114889695&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVMYPRDTILVGMEDLSGKGGAVASGVSLFQQLGGWHLNLNCWVSSGVCGVCMGGCVYVR Same 480817 chr10:113129859-113129936+ 461 461 3 0 339 113118930 113129936 Best 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.525641025641 0.448275862069 10.68715 0.9982 -5.36376923077 16.0509192308 0.998386799616 1.00263883586 755 Best 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 13.9975692308 0.8242 -6.35171538462 20.3492846154 0.861355330824 1.05239477591 2269 Best 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 465 561023 chr4:6018291-6018431- NoOverlap chr4 6018291 6018431 - 12.190216937 47 0.801699595311 -1.10981280531 13.3000297423 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;6018290;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6018291-6018431-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A6018291-6018431&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02432552242 1.01008968625 0.934317794677 6020018 6020158 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;6020017;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6018291-6018431-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A6020018-6020158&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NISEMEPTAKGRTEESFSYVIRAPSSEGFDIMNVDVKIDTSWIFQDMEDSAEER Same 562013 chr4:6018291-6018431- 404 404 61 0 128 6008014 6018431 155 155;465;689;1797;5236 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:6008014-6018431&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.503546099291 0.463054187192 22.4821595745 0.8334 5.09595106383 17.3862085106 1.03483828405 0.967713815966 423 256 256;423;1173;1484;2527 20.9105021277 0.4456 -1.15036170213 22.0608638298 1.13979482742 1.046191383 2 Best 2 2;2247;2302;2304;3145 0.0 0.0 coding exon(s) C4orf50 5' exons 466 485941 chr11:111459630-111459725+ NoOverlap chr11 111459630 111459725 + 9.28168434929 32 0.830334935531 1.78119064867 7.50049370062 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111459629;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111459630-111459725%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111459630-111459725&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03725325217 1.00946074808 1.05005934613 111330355 111330450 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111330354;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111459630-111459725%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111330355-111330450&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSSSSLPLPLVLGMMRYPGTELWAPALYGMEIPDPEGSGLMVPILGMEHDENSGDATPLAGSMEDADGK Same 487899 chr11:111459630-111459725+ 393 393 73 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.625 0.215488215488 12.5863375 0.9791 -2.065203125 14.651540625 1.0526977061 1.01847650004 225 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 30.852575 0.8546 4.9326125 25.9199625 1.03034040871 1.05302504628 618 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 pseudogene unitary pseudogene ENSG00000255093 467 492717 chr12:96682174-96682335+ NoOverlap chr12 96682174 96682335 + 12.6402555563 54 0.853726450949 5.15664638634 7.48360917 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;96682173;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A96682174-96682335%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A96682174-96682335&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.96157968237 1.009318419 1.04020127456 97075952 97076113 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;97075951;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A96682174-96682335%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A97075952-97076113&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CTSGKVEFCLGTEEMHMSIPPDLSQEHFRVFSSVEKSKLPYSQLGLVISSYHQTIGK Same 494699 chr12:96682174-96682335+ 395 395 72 0 340 96682174 96682335 Best 467 467 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:96682174-96682335&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.413580246914 0.144642857143 16.4959444444 0.9563 7.41878333333 9.07716111111 1.03271117635 1.03396204886 451 Best 451 451 17.584437037 0.6798 0.565194444444 17.0192425926 1.02358227333 1.02654272586 730 Best 730 730 0.0 0.0 ENST00000524981.8,ENST00000342887.1 CDSintron,NCintron coding exon(s) CFAP54 cassette exon 468 515949 chr17:2401060-2401173+ NoOverlap chr17 2401060 2401173 + 8.88541314947 38 0.848322913028 3.41141314099 5.47400000848 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2401059;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401060-2401173%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2401060-2401173&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07485119752 1.009234767 0.991065156612 2304354 2304467 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2304353;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401060-2401173%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2304354-2304467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WRGGTDTHNKGRSRAAPGRRPRYYTGATAKARTGAPAR Same 517325 chr17:2401060-2401173+ 390 390 78 0 341 2392678 2402115 Best 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.754385964912 0.83025210084 2.48446315789 0.8899 0.685 1.79946315789 0.184630026375 0.584585647713 9469 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 2.13905 0.6003 -4.08069210526 6.21974210526 0.31787136309 0.74439583436 4466 Best 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 ENST00000174618.4 AntiUTR5 not annotated putative regulatory region 469 557221 chr3:150893338-150893424- NoOverlap chr3 150893338 150893424 - 9.84645502321 29 0.783172455887 -5.09394834499 14.9404033682 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;150893337;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A150893338-150893424-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A150893338-150893424&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.98944529886 1.0091005672 0.947669280447 150611125 150611211 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;150611124;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A150893338-150893424-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A150611125-150611211&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSFSSFQGGARSIQMAVQGSIIKYLLFTRKGKDCNLGK Same 558190 chr3:150893338-150893424- 380 380 89 0 342 150891061 150905397 Best 469 469;1530;2695;7586;8869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:150891061-150905397&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.459770114943 0.222506393862 12.1185206897 0.9988 -6.065 18.1835206897 1.05505567246 0.956057706122 200 Best 200 200;1473;2046;2052;3618 20.0946103448 0.7167 -9.93428965517 30.0289 1.05656345672 1.0124419118 250 Best 250 250;1155;1164;1832;2392 0.0 0.0 ENST00000562308.5,ENST00000565169.1,ENST00000469268.1 NC,NCintron,AntiNCintron protein-coding gene protein-coding gene ENSG00000214237 470 519741 chr17:1229220-1229327- NoOverlap chr17 1229220 1229327 - 8.94188893711 36 0.782033773302 2.32869158437 6.61319735274 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;1229219;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1229220-1229327-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A1229220-1229327&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04077421365 1.00891651221 1.03643949299 1132514 1132621 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;1132513;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1229220-1229327-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A1132514-1132621&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDLPAGPGAAGEAGGGRSWADAVHRQLLQPQLRFRAREDDAPLGDPQAAPGTDEGGDGGDHDFEMVDFNEK Same 521148 chr17:1229220-1229327- 406 406 64 0 164 1228806 1229657 196 196;470;1267 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:1228806-1229657&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.814814814815 0.784639335755 8.735075 0.8873 -0.790188888889 9.52526388889 0.879080331072 1.05805059318 1365 310 310;537;1365 4.30963333333 0.7041 -5.43433055556 9.74396388889 0.483967852584 0.872730385278 3592 1052 1052;1879;3592 0.0 0.151369194456 chr17:76139898-76140395- redundant PhyloCSF signals are accounted for elsewhere on the list 471 530320 chr19:15439326-15440087- NoOverlap chr19 15439326 15440087 - 10.3588602544 254 0.85237671281 2.13054170923 8.22831854515 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15439325;762;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15439326-15440087-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15439326-15440087&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.973438642274 1.0088927417 1.05571363583 15550137 15550898 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15550136;762;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15439326-15440087-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15550137-15550898&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGPYLCELLEEVAEGVASPDEDEDEEPAVFPCIECSIYFKQKEHLLEHMSQHRRAPGQEPPADLAPLACGECGWAFADPTALEQHRQLHQASREKIIEEIQKLKQVPGDEGREARLQCPKCVFGTNSSRAYVQHAKLHMREPPGQTTKEPFGGSSGAGSPSPEASALLYQPYGAAVGLSACVFCGFPAPSESLLREHVRLVHAHPHWEEDGEAYEEDPASQPGTSQDAHACFPDTAVDYFGKAEPSLAPMWRENPAGYDPSLAFGPGCQQLSIR Same 531783 chr19:15439326-15440087- 478 478 -7 0 343 15428334 15450039 Best 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.646981627297 0.388890718119 19.4163673228 0.9782 4.84780748031 14.5685598425 1.0197972363 1.03132366948 577 Best 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 32.7857267717 0.757 3.11932047244 29.6664062992 1.011126827 1.01071238946 929 Best 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.092662056746 chr1:90938272-90941309- ENST00000263381.11 CDSintron coding exon(s) WIZ 2 cassette exons 472 562527 chr4:121764920-121765120- NoOverlap chr4 121764920 121765120 - 8.93069845883 67 0.753362963165 1.20767904707 7.72301941176 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;121764919;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A121764920-121765120-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A121764920-121765120&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01636875161 1.00887869074 1.03721053222 122686075 122686275 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;122686074;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A121764920-121765120-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A122686075-122686275&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGPASAGASSMEWELNLLLYLALFFFLLFLLFLLLFVVIKQLKNSVANTAGALQPGRLSVHREPWGFSREQAV Same 563522 chr4:121764920-121765120- 416 416 56 0 344 121764920 121765120 Best 472 472 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:121764920-121765120&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.63184079602 0.761363636364 15.6483761194 0.8746 4.63818955224 11.0101865672 1.012565801 1.03352869841 633 Best 633 633 17.6387358209 0.3516 3.54575223881 14.0929835821 0.953146082015 0.984096740545 1791 Best 1791 1791 0.0 0.0 ENST00000337677.9,ENST00000461198.5,ENST00000394394.5,ENST00000513254.5,ENST00000424958.2 UTR5,NC,UTR5intron,NCintron,AntiNC protein-coding gene protein-coding gene ENSG00000164112 473 530318 chr19:15438582-15439160- NoOverlap chr19 15438582 15439160 - 11.94857097 193 0.745348429487 3.59038136448 8.35818960549 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15438581;579;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15438582-15439160-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15438582-15439160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03972935504 1.00861025856 1.04903000424 15549393 15549971 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15549392;579;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15438582-15439160-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15549393-15549971&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPWSEEEEEEEEEEDVVLTSEMDFSPENGVFSPLATPSLIPQAALELKQAFREALQAVEATQGQQQQLRGMVPIVLVAKLGPQVMAAARVPPRLQPEELGLAGAHPLDFLLLDAPLGGPLGLDTLLDGDPAMALKHEERKCPYCPDRFHNGIGLANHVRGHLNRVGVSYNVRHFISAEEVKAIERRFSFQKKKK Same 531781 chr19:15438582-15439160- 470 470 3 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.647668393782 0.528375064165 22.3440958549 0.9761 8.2126507772 14.1314450777 0.99733765849 1.05295763874 766 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 40.488126943 0.7441 9.86712849741 30.6209984456 0.944133542445 1.00952971695 1858 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.0432346278961 chr1:90938272-90940069- ENST00000595214.2,ENST00000263381.11 NC,CDSintron coding exon(s) WIZ 2 cassette exons 474 514638 chr16:67210233-67210505- NoOverlap chr16 67210233 67210505 - 8.2960824318 91 0.780821086291 0.115284662653 8.18079776915 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;67210232;273;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A67210233-67210505-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A67210233-67210505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04638195676 1.00855664822 1.04206406708 67244136 67244408 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;67244135;273;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A67210233-67210505-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A67244136-67244408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSIGPQDSSPAQFSFCNLLRLVQERAGRLRALDLSGTGLPPEALQALGQVAGLQLQELSLHSCRDLSTEAVATLCFQQPGLTSLDLSGCSELTDGALLAVSRGLRHLR Same 516290 chr16:67210233-67210505- 427 427 47 0 345 67210140 67211021 Best 474 474;605;1073 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:67210140-67211021&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.296739130435 13.7736879121 0.9822 0.174672527473 13.5990153846 0.988666554928 1.02667772681 842 430 430;842;858 27.4579362637 0.7876 -5.77364945055 33.2315857143 0.987483330493 1.03178052382 1313 171 171;1158;1313 0.0 0.0609321340323 chr1:62273204-62275087- ENST00000409037.5,ENST00000462169.5 UTR5,NC pseudogene LRRC29 (ENSG00000125122) changed to pseudogene from protein-coding after complete structure became apparent and disablements thus revealed 475 508692 chr15:43879527-43879676- NoOverlap chr15 43879527 43879676 - 10.9464679962 50 0.984892957961 -1.95098606266 12.8974540589 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;43879526;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A43879527-43879676-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A43879527-43879676&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01824310503 1.00847023908 0.924532428181 44171725 44171874 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;44171724;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A43879527-43879676-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A44171725-44171874&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YLPSWATMGKSLIKIHTRVRVQLRLTNHCFRPLSVRILRMGPRLQGRVLTAVTPGQGNQLEHFQGK Same 510416 chr15:43879527-43879676- 546 546 -71 0 346 43879527 43879676 Best 475 475 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:43879527-43879676&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62 0.416281221092 12.196496 0.9995 -3.644808 15.841304 1.0337196346 0.945955820305 435 Best 435 435 35.234328 0.7905 1.797844 33.436484 0.946082787382 0.993037149444 1844 Best 1844 1844 0.0 0.0 ENST00000402883.5,ENST00000421674.5 CDSintron,NCintron coding exon(s) FRMD5 alternative 5' exon 476 486202 chr11:117356189-117356374+ NoOverlap chr11 117356189 117356374 + 6.49092749915 62 0.844746097259 -1.90178234995 8.3927098491 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;117356188;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117356189-117356374%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A117356189-117356374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.95462448983 1.00843772226 1.0282721174 117226905 117227090 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;117226904;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117356189-117356374%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A117226905-117227090&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQHFSPFLDPHMSHMQSPDEEQSESEDYSEDQRFYQHILQMVKISRWPEGLGLPESMQDMPCRHSASTVCCMAAESSR Same 488161 chr11:117356189-117356374+ 352 352 124 0 347 117354932 117356374 Best 476 476;2729;7100;15490;19164;22431 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:117354932-117356374&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.586021505376 0.252203389831 10.3513919355 0.9862 -3.07837096774 13.4297629032 1.01066772517 0.996237215871 650 Best 650 650;1071;2341;2829;3370;5930 12.7783306452 0.4617 -4.80836935484 17.5867 0.987940561609 1.04680414529 1307 Best 1307 1307;2765;2996;3723;3958;5242 0.0 0.0156322244936 chr17:40177862-40178381+ ENST00000533675.5,ENST00000278935.7 NC,CDSintron coding exon(s) CEP164 cassette exon 477 465717 chr1:62160908-62161057+ NoOverlap chr1 62160908 62161057 + 15.6408320266 50 0.972381780728 6.42045393348 9.22037809312 ENST00000371158.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;62160907;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62160908-62161057%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A62160908-62161057&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.994977979979 1.00789197077 1.02257245769 62626580 62626729 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;62626579;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62160908-62161057%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A62626580-62626729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAAADDGRLKRGDQILAVNGETLEGVTHEQAVAILKHQRGTVTLTVLS*ASGLITR Same 467577 chr1:62160908-62161057+ 422 422 55 1 348 62153386 62161057 Best 477 477;8272 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:62153386-62161057&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.545058139535 22.011434 0.9473 11.179508 10.831926 1.00296786533 1.03966950495 710 Best 710 710;4470 63.23133 0.9138 33.95907 29.27226 1.01296061973 1.03822829282 894 Best 894 894;936 0.0 0.261052908717 chr9:13106965-13107111- ENST00000371158.6,ENST00000484937.5,ENST00000613764.4 CDS,NC,CDSintron coding exon(s) PATJ cassette exon 478 468160 chr1:181413147-181413581+ NoOverlap chr1 181413147 181413581 + 8.56807171045 145 0.585604849212 4.35045523787 4.21761647257 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;181413146;435;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A181413147-181413581%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A181413147-181413581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.993368106824 1.00786214338 0.938628328841 181382283 181382717 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;181382282;435;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A181413147-181413581%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A181382283-181382717&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PWPHSSSLPPFPTPCLCPLPPTEQCSVMVPEMRGLSPDRRLPEPAPCPAAGSPEPRSAGRRQRHVLALPEEEAWRPQQCALLEADASDEVGMLPASPRAASGFDNFFQVQEGEGQGWEGAMALEAGSSPFLPVSPEVMKRRRGGLIEQRDIIKAHEAHKMQSTPQARRKEWE Same 470027 chr1:181413147-181413581+ 447 447 31 0 349 181413147 181413581 Best 478 478 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:181413147-181413581&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.726436781609 0.766980565017 12.0201793103 0.8156 5.55444068966 6.46573862069 1.02280777991 0.948866219072 550 Best 550 550 24.847517931 0.7705 2.20685172414 22.6406662069 1.03864133115 1.00531913382 498 Best 498 498 0.0 0.0582676257706 chr19:13599753-13599819- ENST00000524607.5 UTR5 coding exon(s) CACNA1E extended to upstream ATG 479 625279 chr12:3200918-3201193+ Extension chr12 3200918 3201193 + 8.07192499336 92 0.68568554473 3.20754342559 4.86438156778 chr12:3200918-3201253+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3200917;276;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3200918-3201193%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3200918-3201193&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0435199678 1.00775194142 1.00540558565 3310084 3310359 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3310083;276;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3200918-3201193%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3310084-3310359&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPPLLAPPGNAASMEKSSSEDSSIHRSPSLDSKDSDFAKPSTSGRPFGRGFTAGAFYGTAGSRGQSRAEAGVKTDKCNAPKGSKYVVFYLDLSFVFLLEFKKCNMAR Same 625954 chr12:3200918-3201193+ 385 385 94 0 350 3199732 3201193 Best 479 479;12827;29069;61461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3199732-3201193&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.605072463768 1.0301464255 12.1489119565 0.9936 4.56457608696 7.58433586957 1.04675853612 1.02232426051 294 Best 294 294;9159;28137;48160 27.2290956522 0.9679 9.35149565217 17.8776 1.03800418581 1.0019009648 506 Best 506 506;13691;30575;61204 0.0 0.00328571282971 chr11:850288-850367+ ENST00000011898.9,ENST00000444315.6 Extension5p,NC coding exon(s) TSPAN9 alternative 5' exon 480 470906 chr1:26168413-26168502- NoOverlap chr1 26168413 26168502 - 8.11374662419 30 0.842830039928 -1.3741133372 9.48785996139 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;26168412;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26168413-26168502-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A26168413-26168502&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.964713839978 1.00771875593 1.0430637187 26494904 26494993 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;26494903;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26168413-26168502-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A26494904-26494993&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARPLPPAAMNQAFWKTYKSKVLQTLSGESEEDLAEEVGAIHAWWVEHVQR None NA NA 0 99 26164164 26171664 118 118;480;770;917;2190;2831;39672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:26164164-26171664&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.0 9.30988666667 0.9792 -0.28804 9.59792666667 0.905493969663 1.04632004655 1279 207 207;447;663;1046;1279;1936;69663 13.2298866667 0.493 -2.65081666667 15.8807033333 0.870022244718 0.999738284322 2239 7 7;93;1782;1970;2239;2545;42994 0.0 0.0 protein-coding gene protein-coding gene ENSG00000282872 481 500124 chr13:86266842-86266928- NoOverlap chr13 86266842 86266928 - 12.8286448563 29 0.89003138623 3.24051015953 9.58813469677 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;86266841;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A86266842-86266928-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A86266842-86266928&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02827758922 1.00724878959 1.05086298789 19800244 19800158 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;19800243;-85;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A86266842-86266928-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A19800244-19800158&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEGLDSHGHITILLLFSPRPPIPLSLLLTEEEAALYIQSFWRACVVR Same 502136 chr13:86266842-86266928- 413 413 68 0 351 86266842 86266928 Best 481 481 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:86266842-86266928&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586206896552 0.420967741935 4.34277931034 0.1987 1.93260689655 2.41017241379 0.0594863651982 0.593991298892 21346 Best 21346 21346 9.45263448276 0.3081 -0.64574137931 10.0983758621 0.44863431792 0.847528737445 3739 Best 3739 3739 0.977001140397 chr16:19788838-19788922+ 0.964831604761 chr16:19788838-19788922+ pseudogene IQ motif containing K (IQCK) pseudogene (ENSG00000283371) 482 484848 chr11:64241673-64242074+ NoOverlap chr11 64241673 64242074 + 9.88989179659 134 0.583989528212 6.5204231545 3.36946864209 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64241672;402;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64241673-64242074%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64241673-64242074&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.99495449326 1.00716836657 0.869838812284 64009145 64009546 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64009144;402;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64241673-64242074%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64009145-64009546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPSEEPGPSNGPGRPRGGGLRGGRAWGRRRPRTPPGEVVWVERARRPADTGPVWVPRRPPRAQSWGGAPGGSTGPGWGVSPEDPGSSEPPSGDVWVPRGRPPAAAAEVLVCWTGGSWVWREWGRPVGATAVQPDRVWTLRKGTGGN Same 486795 chr11:64241673-64242074+ 462 462 20 0 352 64234553 64251600 Best 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.723880597015 0.603603603604 19.7912708955 0.9612 10.5681977612 9.22307313433 0.994739896362 1.01647104001 794 Best 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 14.8365343284 0.5191 4.40134328358 10.4351910448 0.926573909094 0.87431363931 1965 Best 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.0519357432621 chr11:62516744-62534074- ENST00000394540.3,ENST00000309366.8,ENST00000536642.5 UTR5,UTR5intron,NCintron under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 483 565160 chr5:122374317-122374412+ NoOverlap chr5 122374317 122374412 + 8.83736246824 32 0.930296787976 1.07109685242 7.76626561582 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;122374316;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122374317-122374412%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A122374317-122374412&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03015656188 1.00698783317 1.05382252975 121710012 121710107 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;121710011;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122374317-122374412%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A121710012-121710107&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLAACSFIPAVLTAISSSFSALSPFLLMLVNYKMKLVTFCGAK Same 566151 chr5:122374317-122374412+ 453 453 30 0 83 122373512 122374412 96 96;483;792;813;893;6475 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:122373512-122374412&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.395833333333 0.0 11.665628125 1.0 1.971190625 9.6944375 1.01790920094 1.04500754489 592 Best 592 592;628;689;1305;1845;2458 14.964025 0.6177 -2.209746875 17.173771875 0.962980335274 1.02137076395 1664 Best 1664 1664;1963;2350;2533;2860;3772 0.0 0.0 ENST00000261367.11,ENST00000508017.5,ENST00000507143.1 UTR5intron,NCintron,AntiNCintron pseudo-exon SNCAIP untranscribed pseudo-exon. Subsequent reanalysis following the completion of this study suggests it may in fact be an ancient vomeronasal receptor unitary pseuodgene. 484 491261 chr12:48759259-48759342+ NoOverlap chr12 48759259 48759342 + 9.87482863931 28 0.859781033036 -0.728260919452 10.6030895588 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;48759258;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A48759259-48759342%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A48759259-48759342&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00217820616 1.00689730915 1.02827880941 49153042 49153125 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49153041;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A48759259-48759342%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49153042-49153125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DGNYSVHQNSHTRYHEAVRKVLLKTCKYLGVGIMLGEK Same 493238 chr12:48759259-48759342+ 433 433 51 0 154 48759259 48773560 184 184;484;2240;4028 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:48759259-48773560&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.47619047619 0.848484848485 13.3850821429 0.9602 -3.38475 16.7698321429 1.02484881152 0.989891779845 531 399 399;531;2175;8960 13.3298571429 0.4021 -7.50267142857 20.8325285714 0.885785366797 1.06051138047 2172 281 281;2172;4005;10183 0.0 0.0 ENST00000548054.2 NC protein-coding gene protein-coding gene ENSG00000257987 485 708938 chr5:179121557-179121658- Extension chr5 179121557 179121658 - 8.72371180969 34 0.905501326189 2.01253531084 6.71117649885 chr5:179121557-179121742- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;179121556;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A179121557-179121658-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A179121557-179121658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05199102278 1.00673361205 1.03552516744 178548558 178548659 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;178548557;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A179121557-179121658-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A178548558-178548659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISSSNRPVYNSASALQCMPCALWSLPWAPLLSVYGKLP Same 709550 chr5:179121557-179121658- 428 428 57 0 353 179121557 179124939 Best 485 485;1809 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:179121557-179124939&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.617647058824 0.34693877551 6.92823529412 0.9285 1.77822352941 5.15001176471 0.626317951093 0.858441367959 2409 409 409;2409 4.42306176471 0.8141 -2.26010882353 6.68317058824 0.35595227616 0.748904236087 4201 1431 1431;4201 0.0 0.0 ENST00000251582.11,ENST00000518335.1,ENST00000522937.1 ExtensionMid,NC,NCintron coding exon(s) ADAMTS2 alternative final exon 486 552947 chr3:100208090-100208179+ NoOverlap chr3 100208090 100208179 + 11.5242967208 30 0.746108695099 0.625336698691 10.8989600221 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;100208089;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A100208090-100208179%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A100208090-100208179&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01583266387 1.00558268974 1.02429495977 99926934 99927023 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;99926933;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A100208090-100208179%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A99926934-99927023&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NNGFLNDDFIVWMRAAAFPTFKKLYGRLSR Same 553899 chr3:100208090-100208179+ 501 501 -15 0 354 100208048 100211682 Best 486 486;1802;4544;9039 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:100208048-100211682&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.613636363636 21.41432 0.9084 6.47649666667 14.9378233333 1.00950432553 1.03961430536 657 241 241;657;2616;3530 67.22868 0.9685 13.84858 53.3801 0.978341340253 1.04491303143 1450 1055 1055;1450;1488;1682 0.0 0.208551508005 chr14:61280092-61281147- pseudogene TMEM30C converted to a transcribed unitary pseudogene TMEM30CP (ENSG00000235156) due to disablement of the longer isoform, lack of expression data for last 4 exons and PMID:17258408. 487 485935 chr11:111457066-111457335+ NoOverlap chr11 111457066 111457335 + 9.38908554912 90 0.833245170096 1.830082227 7.55900332212 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111457065;270;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111457066-111457335%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111457066-111457335&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04011563492 1.00543056807 1.04987727434 111327791 111328060 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111327790;270;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111457066-111457335%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111327791-111328060&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTNSSLYPCPGGVRTSEAAILPYVPYPTSPTTGSPPATHLPILQPRRTSPLGALMTDPVTGIKVPVLAVNLHPQTRQWLTLGRTYCNPLTKTLAPLEMGGPWR Same 487893 chr11:111457066-111457335+ 430 430 57 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.618518518519 0.24302430243 13.5888577778 0.9707 1.95571333333 11.6331444444 1.00346146749 1.0481899677 707 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 31.38702 0.8182 3.31753333333 28.0694866667 1.00079311336 1.04514697423 1100 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000527555.1 NC pseudogene unitary pseudogene ENSG00000255093 488 579874 chr7:150407660-150408220+ NoOverlap chr7 150407660 150408220 + 12.0190011109 187 0.724415944617 5.26830854327 6.75069256764 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;150407659;561;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A150407660-150408220%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A150407660-150408220&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0396290163 1.00534798086 1.03284340466 150104748 150105308 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;150104747;561;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A150407660-150408220%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A150104748-150105308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQLEVPMTELASSGGGSPAGDGEEGLGDERGLVIHHPAEEQPYRCPLCGQTFSQQPSLVRHQKAHAGAGRAAAFVCPECGKAFSVKHNLEVHQRTHTGERPFPCPECGRCFSLKQNLLTHQRIHSGEKPHQCAQCGRCFREPRFLLNHQRTHARMPAPHPRRPGVFGERRPYFCPRCGKSFAREGSLKTHQRSHGHGPEGQAAHLGRVL None NA NA 0 355 150407660 150408220 Best 488 488 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:150407660-150408220&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.727272727273 0.926484517304 16.4843122995 0.8679 5.64216042781 10.8421518717 1.02488058187 1.04718262752 530 Best 530 530 23.6321283422 0.8131 -12.959131016 36.5912593583 0.918396546955 1.03023418228 2020 Best 2020 2020 0.0455588759266 chr7:150396513-150398095+ 0.22350994596 chr19:58356139-58357635- ENST00000491664.1,ENST00000464630.1 NC,NCintron protein-coding gene protein-coding gene ENSG00000284691 489 540200 chr2:135040378-135040536- NoOverlap chr2 135040378 135040536 - 5.64623776247 53 0.904997329671 -2.88265466015 8.52889242262 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;135040377;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A135040378-135040536-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A135040378-135040536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.887349115062 1.00529957141 1.03475462116 135797948 135798106 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;135797947;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A135040378-135040536-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A135797948-135798106&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MNKNKLIHYFLEVVSRGDVELICDYITEVQSILGNLDFQHPETWNTPLITAAEENLTEVTCGMLGSR Same 541562 chr2:135040378-135040536- 425 425 64 0 104 135024648 135040536 124 124;489;494;8049 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:135024648-135040536&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.415094339623 0.586175115207 7.94845660377 0.9819 -2.0689490566 10.0174056604 0.994776495338 1.0700623039 793 338 338;436;793;1657 7.60740566038 0.3781 -3.33768113208 10.9450867925 0.63631858047 0.933380461538 3035 1904 1904;2042;3035;3818 0.0 0.0 ENST00000414343.1,ENST00000486077.1 UTR5,NC pseudo-exon MAP3K19 has three upstream coding exons in other species, although in human the second has a non-variant premature termination codon, so the gene had been made to use a downstream ATG. It has been maintained as coding due to PMID:27144281 490 521541 chr17:42040353-42040796- NoOverlap chr17 42040353 42040796 - 7.31063386735 148 0.729885206791 0.670604722826 6.64002914452 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;42040352;444;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42040353-42040796-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A42040353-42040796&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.965292674064 1.00525686322 1.05789624262 40192371 40192814 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;40192370;444;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42040353-42040796-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A40192371-40192814&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TDPEPPAYLGQYESILDALFRLHGGPSSHLVPELRAALDLAAIDLAGPRPVPWASLLPVVEAVAEAWPGLVPTLEAAALASPVAGSLALALRQFTFVAFTHLLLDALPSVQKLSLVLQAEEPDLALLQPLVMAAAASLQAQRGSGGARLQGFLQELASMDPDASSGR Same 522961 chr17:42040353-42040796- 336 336 154 0 202 42039741 42043379 246 246;490;677;1042;1254;1300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:42039741-42043379&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.65990990991 0.270325964781 11.756597973 0.9317 0.719583108108 11.0370148649 1.00183585001 1.04959148062 721 211 211;393;721;1090;1261;1575 24.7331601351 0.6476 1.65442702703 23.0787331081 1.0561367582 1.00913217925 256 Best 256 256;463;585;758;813;1544 0.0 0.00934602696729 chr17:41624078-41624509- ENST00000587304.1,ENST00000436535.3 NC,CDSintron protein-coding gene protein-coding gene ENSG00000267221 491 558277 chr4:2626408-2626581+ NoOverlap chr4 2626408 2626581 + 20.4149776615 58 0.878059631205 12.4569586282 7.95801903333 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;2626407;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A2626408-2626581%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A2626408-2626581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.997850893623 1.00512181426 1.01652021651 2628135 2628308 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;2628134;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A2626408-2626581%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A2628135-2628308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSNLPVLSHREISAEADREPQQLQNYWSEVRYTVRCIYRQAGTPLADDQDQSLVPDKEGVKELVDRYILPFPVVAPCKPLPSLLHLEPLLSGWAFLTVLSWVCLAFGACQDCSR Same 559251 chr4:2626408-2626581+ 411 411 80 0 137 2625247 2631004 164 164;491;1030 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:2625247-2631004&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.597701149425 0.589830508475 25.7473862069 0.9055 13.7857344828 11.9616517241 1.00757639333 1.0194227925 670 544 544;670;989 53.1933586207 0.9384 24.5649775862 28.6283810345 0.973937111817 1.00971683056 1524 Best 1524 1524;1546;1740 0.0 0.0 ENST00000324666.9,ENST00000512465.5 UTR5,NC coding exon(s) FAM193A 5' extended by 4 new coding exons 492 548094 chr22:21657814-21658014+ NoOverlap chr22 21657814 21658014 + 10.0954954954 67 0.653407943118 5.44222686051 4.65326863491 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21657813;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21657814-21658014%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21657814-21658014&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04969197427 1.00501908275 0.993253163669 22012103 22012303 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;22012102;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21657814-21658014%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A22012103-22012303&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLVEILDKFDSEVPQSKTCQQISEEDLERQADTYTGRALRLLFRSPVRNPSLAERVVQLEQRGLSFFRMRPR Same 549514 chr22:21657814-21658014+ 448 448 44 0 73 21657814 21660946 82 82;492;4782 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21657814-21660946&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641791044776 0.91847041847 12.2216149254 0.8807 4.6194238806 7.60219104478 1.01836896717 1.02314656362 584 29 29;584;2975 13.8669343284 0.3949 4.63215970149 9.23477462687 0.773825265381 0.87383475703 2568 278 278;2568;5288 0.0 0.0 ENST00000498589.1 NCintron pseudogene unitary pseudogene (ENSG00000284630) 493 481974 chr10:102450917-102451009- NoOverlap chr10 102450917 102451009 - 5.61594839634 31 0.791810827507 -5.14794181335 10.7638902097 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102450916;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102450917-102451009-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102450917-102451009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.680313914157 1.00473827277 0.999897675224 104210674 104210766 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104210673;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102450917-102451009-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104210674-104210766&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QGVWPPPPQLLTCTYLAAPLLLPPVQAHSFRSRPGSLHAGEWAAPREYHR Same 483891 chr10:102450917-102451009- 426 426 67 0 356 102450527 102451009 Best 493 493;556;10070 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102450527-102451009&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.731182795699 0.575596816976 5.50941290323 0.9206 -6.50607096774 12.015483871 0.779855015294 1.07876355127 1756 272 272;1756;5436 5.17651290323 0.4716 -8.69660322581 13.873116129 0.595394967239 0.983036156616 3183 566 566;3183;3758 0.0 0.139100492185 chr17:42543028-42544238+ ENST00000625129.1,ENST00000596045.1,ENST00000473970.2 NC,AntiNC,AntiNCintron protein-coding gene protein-coding gene ENSG00000120055 494 540199 chr2:135030309-135030470- NoOverlap chr2 135030309 135030470 - 9.22056479586 54 0.95719844358 -1.94525002716 11.165814823 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;135030308;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A135030309-135030470-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A135030309-135030470&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02507279065 1.00452436113 0.935377980975 135787879 135788040 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;135787878;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A135030309-135030470-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A135787879-135788040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VDITLCNYSNRTAIHVANCNIQRQLLAVNRIQAPQMQLLQSSWQGDLEQVQHLLVS Same 541561 chr2:135030309-135030470- 516 516 -22 0 104 135024648 135040536 124 124;489;494;8049 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:135024648-135040536&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.407407407407 0.307692307692 11.1091685185 0.9841 -2.51156296296 13.6207314815 1.03371503427 0.993683188562 436 338 338;436;793;1657 11.3574777778 0.3923 -5.30688333333 16.6643611111 0.936349902787 1.04150261062 1904 Best 1904 1904;2042;3035;3818 0.0 0.0 ENST00000468155.5,ENST00000414343.1 NC,UTR5intron pseudo-exon MAP3K19 has three upstream coding exons in other species, although in human the second has a non-variant premature termination codon, so the gene had been made to use a downstream ATG. It has been maintained as coding due to PMID:27144281 495 569714 chr5:160685143-160685226- NoOverlap chr5 160685143 160685226 - 12.0369715861 28 0.897648475733 -0.101228607552 12.1382001936 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;160685142;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A160685143-160685226-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A160685143-160685226&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01818632137 1.00428104234 1.00608291448 160112150 160112233 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;160112149;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A160685143-160685226-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A160112150-160112233&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEMKKEGRKRWKRKEDKKRVVVSNLLFEGWSHK Same 570732 chr5:160685143-160685226- 440 440 55 0 357 160684840 160685226 Best 495 495;697 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:160684840-160685226&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.388888888889 14.5629892857 0.9601 -2.275575 16.8385642857 1.03022546422 0.993233265393 481 Best 481 481;872 19.0550392857 0.8782 -9.00751785714 28.0625571429 0.977863626702 1.03509113398 1455 Best 1455 1455;1547 0.0 0.162335295117 chr15:25862648-25863096- ENST00000326831.7,ENST00000327245.9,ENST00000517802.5 NC,CDSintron,NCintron coding exon(s) ATP10B alternative first exon 496 617486 chr11:3614740-3614790+ Extension chr11 3614740 3614790 + 6.73216455123 17 0.957747768368 -8.49115881455 15.2233233658 chr11:3614650-3614790+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;3614739;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A3614740-3614790%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A3614740-3614790&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.429542459445 1.00424922424 0.947110611107 3635970 3636020 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;3635969;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A3614740-3614790%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A3635970-3636020&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IEILPQHAATCGETSPPHPASPSSSSSSSQSVLWVSSPESSPPVSWVPCPICQLRFSAREVEEHASICGDFPQA Same 618194 chr11:3614740-3614790+ 575 575 -79 0 358 3604303 3614790 Best 496 496;13915 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:3604303-3614790&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.529411764706 0.28021978022 13.1869294118 0.9738 -8.7041 21.8910294118 0.844074285505 0.959427710196 1493 Best 1493 1493;12989 14.5418764706 0.4156 -12.1291529412 26.6710294118 0.689747857098 1.05996961261 2850 Best 2850 2850;9604 0.0 0.0 ENST00000451043.6 NCintron pseudogene TRPC2 transient receptor potential cation channel, subfamily C, member 2 pseudogene (ENSG00000182048) 497 591979 chr9:61063756-61063893- NoOverlap chr9 61063756 61063893 - 7.87923266447 46 0.452956435492 -1.52765870159 9.40689136606 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61063755;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61063756-61063893-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61063756-61063893&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.650855609005 1.00385753615 1.00641741161 43894315 43894178 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;43894314;-136;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61063756-61063893-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A43894315-43894178&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATVMPGVEPGCAGHCSTYGHLCRNGGRCREKRRGVTCDCAFSAYDGPFCSNGK Different 592931 chr9:61063756-61063992- 281 281 216 0 51 61063756 61073097 57 57;497;1416;2274;21077 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61063756-61073097&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586956521739 0.259073842303 11.3813065217 0.411 0.135741304348 11.2455652174 0.740423549898 1.04945921686 1928 1534 1534;1928;3000;3904;11180 42.9380782609 0.8159 3.17384565217 39.7642326087 0.985627959115 0.967462454916 1336 1059 1059;1309;1336;1510;1854 0.966137779578 chr9:41920070-41920309- 0.862052505096 chr9:41920070-41920309- pseudogene contactin associated protein-like 3B (CNTNAP3B) unprocessed pseudogene (ENSG00000283541) 498 609892 chr1:161305675-161305875- Extension chr1 161305675 161305875 - 8.1828820741 67 0.885017348597 2.13223423709 6.05064783701 chr1:161305675-161305977- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;161305674;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A161305675-161305875-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A161305675-161305875&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.997627952799 1.00331330276 1.04484374069 161275465 161275665 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;161275464;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A161305675-161305875-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A161275465-161275665&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RLAGRAGDRGLGVESAKGPKVMVIEMELRKDEQSPELRPAVKSPSRTSLKNALKNMMGLNSDK*SPPPHPRPCQSR Same 610610 chr1:161305675-161305875- 408 408 90 3 359 161305675 161314396 Best 498 498;22411 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:161305675-161314396&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.621890547264 0.676242236025 8.04011940299 0.9681 1.36159552239 6.6785238806 0.939788153494 1.01140100497 1139 Best 1139 1139;63498 11.1899656716 0.5885 -2.91225522388 14.1022208955 0.898133423339 1.00230013693 2112 Best 2112 2112;33422 0.0 0.00398526652936 chr17:40341390-40341615+ ENST00000491222.5,ENST00000463290.5 Extension3p,NC not annotated MPZ known STOP codon readthrough event 499 511036 chr16:28259366-28259497+ NoOverlap chr16 28259366 28259497 + 8.5523818054 44 0.750569785749 2.82582497106 5.72655683434 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;28259365;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A28259366-28259497%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A28259366-28259497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04100452047 1.00328902784 1.01956779719 28270687 28270818 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;28270686;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A28259366-28259497%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A28270687-28270818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQVAGGQVQSPEADGLLTLERPGSGTPAQAGDDAAEATPGHPCPVLELPPAWPMGCGVDDVPAFCFVCFHREEEEELLEEVPLR Same 512676 chr16:28259366-28259497+ 445 445 54 0 360 28259225 28259497 Best 499 499;15091;54523 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:28259225-28259497&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.651515151515 0.357723577236 13.601675 0.9633 4.26210909091 9.33956590909 1.06162028097 1.04475690791 135 Best 135 135;2877;3068 14.3742863636 0.4582 2.067 12.3072863636 0.907103838347 0.943631463417 2069 Best 2069 2069;4819;5298 0.0 0.0 under investigation SBK1 potential non-ATG start 500 463456 chr1:13893666-13893752+ NoOverlap chr1 13893666 13893752 + 14.3484206282 29 0.850680999624 5.27908627021 9.06933435798 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;13893665;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A13893666-13893752%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A13893666-13893752&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.023102858 1.00306002393 1.04740350109 14220161 14220247 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;14220160;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A13893666-13893752%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A14220161-14220247&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMESTLATSNSATGPVTFSHVFGQQCQLMQAGR Same 465322 chr1:13893666-13893752+ 449 449 51 0 361 13893666 13893752 Best 500 500 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:13893666-13893752&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.551724137931 0.660341555977 21.1038655172 0.9909 7.24662413793 13.8572413793 1.04656573591 1.04800152584 297 Best 297 297 33.5344310345 0.5695 12.3065172414 21.2279137931 1.0535808987 1.02753719998 280 Best 280 280 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 501 491098 chr12:40433763-40433909+ NoOverlap chr12 40433763 40433909 + 13.7913225524 49 0.926604104677 0.645295926503 13.1460266259 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40433762;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40433763-40433909%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40433763-40433909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.987990875759 1.00279927391 0.942222942829 40827565 40827711 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40827564;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40433763-40433909%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40827565-40827711&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NFVVCSYTGLCGSYNNKAEDDFMSSQNILEKTSQAFANSWEMMSCPKGNPSSCISIEK Same 493075 chr12:40433763-40433909+ 487 487 14 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.401360544218 0.0 18.7678653061 0.9827 1.4308122449 17.3370530612 0.975443502794 0.95225660308 930 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 30.8983163265 0.6894 -5.83505306122 36.7333693878 0.964752043365 0.948527845424 1637 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.126864347348 chr11:1231996-1232160+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 502 582913 chr7:143644473-143644682- NoOverlap chr7 143644473 143644682 - 5.72139858987 70 0.514692258226 -1.69768854507 7.41908713494 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143644472;210;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143644473-143644682-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143644473-143644682&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.679861252198 1.00277499867 1.05491831889 143341566 143341775 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143341565;210;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143644473-143644682-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143341566-143341775&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVESPVQVQIGCHTDDLTKARKLSRAPVVTHQCWMDRTERSVSCLWGGLLYVIVPKGSQLGPVPVTIRGAVPAPYYK Same 583842 chr7:143644473-143644682- 595 595 -93 0 72 143639739 143647639 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.609523809524 0.362068965517 15.3897757143 0.9619 -3.42951857143 18.8192942857 0.929455728595 0.969645659082 1192 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 33.3702485714 0.8394 -6.26626714286 39.6365157143 0.990489252457 0.984757707756 1273 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.955077419271 chr7:143722658-143722871+ 0.791513537907 chr7:143722658-143722871+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 503 579665 chr7:142389398-142389457+ NoOverlap chr7 142389398 142389457 + 3.70706495717 20 0.824023041123 -10.9309947748 14.6380597319 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142389397;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142389398-142389457%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142389398-142389457&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0815170406496 1.00272667761 0.918369874308 142242551 142242492 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142242550;-58;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142389398-142389457%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142242551-142242492&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TAAPFSDFPPLCPPLYTGEDLQAVCCAHPPSAFPTGPVEAGVTQSPTHLIKTRGQQVTLRCSPISGHSSVSWYQQAPGQGPQFIFEYANELR None NA NA 0 362 142381077 142408131 Best 503 503;2671;2771;4607;6492;14294;16204;21550;22314 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142381077-142408131&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.277777777778 4.85936 0.9012 -23.144155 28.003515 0.654470406635 1.02289528969 2284 2259 2259;2284;2682;2903;3300;3654;22326;44473;52081 9.281835 0.5019 -29.90912 39.190955 0.753971943741 0.834237812673 2619 Best 2619 2619;2643;2937;3046;3257;3635;4345;4428;8592 0.0 0.0 ENST00000390362.1 NC immunoglobulin segment overlaps an immunoglobulin region 504 525232 chr18:5399038-5399316- NoOverlap chr18 5399038 5399316 - 13.6167633537 93 0.913907942157 2.66348067407 10.9532826796 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;5399037;279;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A5399038-5399316-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A5399038-5399316&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05423641934 1.00266488768 1.03055355471 5399037 5399315 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;5399036;279;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A5399038-5399316-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A5399037-5399315&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IVTYKVVTVSSKTGDLPADMLKSGTIKMQSFEELAREMQLKEDSKQKIYTLGKSYDTVSGRIVTMTGKAKEGEKVEQPSTTEALQKMEKEIPESMK Same 526675 chr18:5399038-5399316- 441 441 63 0 226 5398651 5407505 284 284;504;528;38180 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:5398651-5407505&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.430107526882 0.314277668262 21.1691397849 0.9556 2.71899784946 18.4501419355 1.03553642748 1.02962933788 410 201 201;410;974;20747 25.7541043011 0.6883 0.125817204301 25.6282870968 0.967417182171 1.05169191866 1608 692 692;1608;1932;5206 0.0 0.0 ENST00000578618.5,ENST00000341928.6,ENST00000542652.6 NC,CDSintron,NCintron coding exon(s) EPB41L3 cassette exon 505 463035 chr1:6454434-6455003+ NoOverlap chr1 6454434 6455003 + 11.7481637203 190 0.744431701823 6.31729313896 5.43087058138 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;6454433;570;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6454434-6455003%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A6454434-6455003&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04142818946 1.0025665498 0.998473489509 6514494 6515063 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;6514493;570;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6454434-6455003%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A6514494-6515063&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTAASSCCYPREGWRYSREHNAILGPFGELMTEADILRIEQQIENLQVLHKAQKLEARLEQLELELEQLLPISAALSAPRFTVDPRRMHGRAASLPAWCSKISTLLKNMATLLAALGGRPAHLAELLTADTGQPLAPLPDAPWLPGPLCLGRSHSLSWCREAVAREILECGVSVQHLRATYELRARGAAPAR Same 464899 chr1:6454434-6455003+ 460 460 45 0 194 6447414 6467425 235 235;370;505;560;639;1215;12903;51895 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:6447414-6467425&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.715789473684 0.990180230173 17.4121084211 0.919 8.16504210526 9.24706631579 1.02438939218 1.02055323211 536 395 395;511;536;884;1170;1602;50220;68713 31.8585221053 0.8739 5.82969684211 26.0288252632 0.990813729188 1.01152984129 1267 638 638;851;876;1267;1741;2000;23707;36104 0.0 0.250260356759 chr2:238130128-238131732+ ENST00000377828.5,ENST00000477679.1 CDSintron,NCintron coding exon(s) ESPN very large alternative final exon 506 577011 chr7:290122-290274+ NoOverlap chr7 290122 290274 + 8.85909997428 51 0.542601244358 2.7504490386 6.10865093568 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;290121;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A290122-290274%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A290122-290274&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.938068319302 1.0020009408 1.0394795635 330088 330240 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;330087;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A290122-290274%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A330088-330240&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRQLQPGPPASAERARMFDSSQYPYNCFNYDADDYPAGSSDEDKRLTRPAYR Same 578051 chr7:290122-290274+ 578 578 -72 0 363 290122 291410 Best 506 506;2249 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:290122-291410&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.647058823529 1.20722591362 8.99766078431 0.6036 -0.517401960784 9.5150627451 0.877588252491 1.06306839759 1372 Best 1372 1372;2401 29.3033941176 0.7697 3.9973745098 25.3060196078 0.982965026066 1.03715186533 1378 470 470;1378 0.0 0.0413525237128 chr13:40665583-40666212- protein-coding gene protein-coding gene ENSG00000248767 507 571888 chr6:60430396-60430572+ NoOverlap chr6 60430396 60430572 + 19.9745354713 59 0.917352223485 8.55527626862 11.4192592027 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;60430395;177;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60430396-60430572%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A60430396-60430572&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.991251504107 1.00192269928 0.97715089762 57398141 57398317 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;57398140;177;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60430396-60430572%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A57398141-57398317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSTKSFPLYMHQLHKALRENHHLCHGGRMQYVLFLKGIGLTLEQTLQFWKQEFIKGKMDPDK Same 572913 chr6:60430396-60430572+ 455 455 52 0 364 60425413 60430572 Best 507 507;4144 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:60425413-60430572&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.412429378531 0.266165413534 23.4635033898 0.9348 8.62839322034 14.8351101695 0.967361753128 0.98455261477 984 Best 984 984;2743 61.3584033898 0.9785 19.5138525424 41.8445508475 0.976764595639 0.973091200616 1480 788 788;1480 0.987790630279 chr6:57537440-57537625+ 0.997085267611 chr6:57537440-57537625+ redundant PhyloCSF signals are accounted for elsewhere on the list 508 591940 chr9:38694791-38694868- NoOverlap chr9 38694791 38694868 - 9.42818845006 26 0.898443579767 -2.45077325289 11.878961703 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;38694790;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A38694791-38694868-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A38694791-38694868&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.954029744998 1.0018160019 0.998738956513 38694788 38694865 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;38694787;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A38694791-38694868-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A38694788-38694865&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LREEWRQRLERRLRMLDNPVEKEKPAHTAD Same 592895 chr9:38694791-38694868- 469 469 39 0 177 38694791 38703999 214 214;508 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:38694791-38703999&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.564102564103 0.193548387097 11.1990692308 0.935 -3.77293461538 14.9720038462 0.94349011081 1.02550202406 1119 564 564;1119 14.0883807692 0.4365 -7.82086923077 21.90925 0.899732626744 1.06219108013 2107 13 13;2107 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283329 509 656511 chr17:1125369-1125464- Extension chr17 1125369 1125464 - 12.989596772 32 0.844716086824 8.52025018912 4.46934658289 chr17:1125189-1125464- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;1125368;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1125369-1125464-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A1125369-1125464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04957010095 1.00173605526 0.87181357185 1028704 1028799 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;1028703;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1125369-1125464-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A1028704-1028799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGPGACWLSPAPHQAQAPAQPPPGPGVDGAAGAMAAGGRRRRPLRYQSLAALVEDSQWPFLFLVSDFSYGTDEYDGEGNEEQK Same 657136 chr17:1125369-1125464- 471 471 38 0 365 1125369 1125464 Best 509 509 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:1125369-1125464&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.645833333333 0.601880877743 15.877503125 0.9861 9.320946875 6.55655625 1.02778232091 0.912260989431 500 Best 500 500 14.37891875 0.6219 5.586303125 8.792615625 0.730523519918 0.801623346356 2707 Best 2707 2707 0.0 0.0 ENST00000302538.9,ENST00000574437.5,ENST00000544583.6,ENST00000574632.5 ExtensionMid,UTR5,UTR5intron,NCintron coding exon(s) ABR 5' extension 510 547970 chr22:19029521-19029805+ NoOverlap chr22 19029521 19029805 + 8.46437892204 95 0.465465701333 4.19927155938 4.26510736266 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;19029520;285;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A19029521-19029805%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A19029521-19029805&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.990300501542 1.00108317031 0.970455022733 19017034 19017318 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;19017033;285;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A19029521-19029805%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A19017034-19017318&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALAAVEAAGRMAEPGRPWAQARSAYRASEVLRRGTGRRRDPGPQSNGPGQEDARAPGRMARLRGQLRAEAASRSEVPRLLKLVERAGAGAAGRGREDRRAQPRAPCAR Same 549390 chr22:19029521-19029805+ 530 530 -20 0 366 19029521 19030212 Best 510 510;1047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:19029521-19030212&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 1.05414338554 8.49939157895 0.6068 3.41728526316 5.08210631579 0.862134062436 0.916838471767 1422 87 87;1422 5.52154421053 0.3941 -0.634251578947 6.15579578947 0.421097673072 0.7675550157 3855 2967 2967;3855 0.0 0.226801831722 chr12:12786909-12787652+ ENST00000440005.6 NCintron under investigation; now made coding Two adjacent NPRs highlight ORFs in a previously unannotated region, although in distinct frames. However, indel variants rs10709444 and rs11356224 have no support for the genomic conformation in 1000 genomes data, and if these are 'corrected' the NPRs can be united into a prospective single exon 233aa CDS. These variants are now under investigation by the Genome Reference Consortium as possible errors in the genome assembly, and GENCODE cannot annotate this as a protein-coding gene until fixed genomic sequence becomes available. However, previously unidentified duplicants of this locus with coding potential have now been identfiied at [chr22:21,360,601-21,361,299 (-)] and [chr22:18,633,984-18,634,682 (+)], and these have been respectively annotated as protein-coding genes ENSG00000286102 and ENSG00000286175 in GENCODEv31. These three loci share homology with mouse protein-coding gene B830017H08Rik / ENSMUSG00000116652. 511 541463 chr2:196990683-196990772- NoOverlap chr2 196990683 196990772 - 15.5832932731 30 0.980342310725 6.28028999368 9.30300327937 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;196990682;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A196990683-196990772-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A196990683-196990772&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02179447751 1.00083234443 1.04606210391 197855407 197855496 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;197855406;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A196990683-196990772-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A197855407-197855496&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTLSNLGSMVSLCSNNVGSEDGYNENDSDSETF Same 542835 chr2:196990683-196990772- 418 418 93 0 367 196990683 196990934 Best 511 511;12997 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:196990683-196990934&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.455555555556 0.923076923077 16.8414733333 0.9999 6.53637333333 10.3051 1.0593351308 1.04013640756 160 Best 160 160;13602 21.8714033333 0.8693 1.96721666667 19.9041866667 0.993905226976 1.03473110295 1213 Best 1213 1213;2576 0.0 0.485267538021 chr3:15670270-15670556- ENST00000282272.12 CDSintron coding exon(s) ANKRD44 alternative final exon 512 580013 chr7:155074599-155074748+ NoOverlap chr7 155074599 155074748 + 8.32437586129 50 0.412873426413 -0.80489988327 9.12927574456 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;155074598;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A155074599-155074748%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A155074599-155074748&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.67388256168 1.00058279327 1.00876558344 154866309 154866458 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;154866308;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A155074599-155074748%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A154866309-154866458&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TEGLTPIIYTGTIDIQEVETV*TILPSIILTLIALPSLFILYIINKINNPLTLKIIGYQ Same 580982 chr7:155074599-155074748+ 721 721 -209 13 368 155074599 155074748 Best 512 512 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:155074599-155074748&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 -1.564606 0.0942 -4.220018 2.655412 0.00204059340521 0.645810410511 40467 Best 40467 40467 26.7767 0.6296 -2.610972 29.387672 0.988342371527 1.00394939891 1299 Best 1299 1299 0.0 0.831521370509 chrM:7586-8269+ ENST00000287907.2 CDSintron pseudogene mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene (ENSG00000283339) 513 524738 chr18:58256169-58256765+ NoOverlap chr18 58256169 58256765 + 14.2752843749 199 0.754443845074 5.63059196681 8.64469240812 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;58256168;597;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A58256169-58256765%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A58256169-58256765&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0189189177 1.00016589356 1.04656501727 55923401 55923997 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;55923400;597;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A58256169-58256765%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A55923401-55923997&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSGPVDCAEEAAPGLRIQHRASSADVRQVRLLPLGPDGQGGPAAAEPRRWSLQHVPDASGSSGKRCFVFQLQQPQQGASGPGSDLNFGFTGTKGDRLVRYPRIRLERSTSYPTQPRSERGSPTEDRGALEASPRAGRMAPEIRRTNSAERTPQGQGCTFKIRQDQNAGQQHFRILVTRGPEEAPQNPEEKSAKSPVSTGADTTVSSQR Same 526181 chr18:58256169-58256765+ 446 446 67 0 369 58255504 58256765 Best 513 513;552;42317 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:58255504-58256765&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.659966499162 0.724196670538 24.631179397 0.9568 11.3161020101 13.3150773869 1.02394679652 1.04433816606 538 Best 538 538;751;12425 39.2654472362 0.8268 14.0483030151 25.2171442211 0.989009436517 0.987251525999 1291 1184 1184;1291;69046 0.0 0.0 ENST00000256830.13,ENST00000431212.6,ENST00000585323.5 CDSintron,UTR5intron,NCintron coding exon(s) NEDD4L alternative first coding exon. This CDS was not subjected to further analysis as it was reclassified as coding once this work was completed. 514 559054 chr4:56272320-56272394+ NoOverlap chr4 56272320 56272394 + 9.07555206299 25 0.963812314031 -3.09390800238 12.1694600654 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;56272319;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56272320-56272394%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A56272320-56272394&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.896578021511 1.00005790496 0.992310482924 57138486 57138560 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;57138485;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56272320-56272394%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A57138486-57138560&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSPATLQHVFVLQSTDKKKGGKFQPFKKLFGKRKKKDPSLFR Same 560039 chr4:56272320-56272394+ 538 538 -24 0 370 56272320 56272475 Best 514 514;9186 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:56272320-56272475&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4 0.358851674641 10.039664 0.9766 -5.04214 15.081804 0.941641663302 1.02470415418 1129 Best 1129 1129;3651 16.936084 0.5091 -4.268216 21.2043 0.957998561522 1.04978022596 1727 Best 1727 1727;3717 0.0 0.0 ENST00000264229.10,ENST00000503618.1 UTR5,NC coding exon(s) KIAA1211 alternative first exon 515 494074 chr12:2854907-2854993- NoOverlap chr12 2854907 2854993 - 15.854575671 29 0.891358394961 6.66772750739 9.1868481636 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2854906;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2854907-2854993-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2854907-2854993&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02253528497 0.999746109571 1.04025600178 2964073 2964159 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2964072;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2854907-2854993-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2964073-2964159&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELKEVEKLKLRSEARAPPLDAQGNIQPPASFK Same 496068 chr12:2854907-2854993- 456 456 59 0 6 2849327 2855413 6 6;133;515;985;1632;2840;5109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2849327-2855413&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.609195402299 0.378260869565 25.0634 0.9859 8.7303137931 16.3330862069 1.04735149714 1.0367637429 287 26 26;270;287;599;1474;2001;2776 27.3708241379 0.4088 7.23265517241 20.1381689655 1.02640816839 1.02574934269 675 189 189;675;1206;2115;2904;3470;3931 0.0 0.0 ENST00000537710.5 AntiNCintron protein-coding gene protein-coding gene ENSG00000283297 516 560222 chr4:146222356-146222442+ NoOverlap chr4 146222356 146222442 + 14.1480067213 29 0.792041630821 4.55096887515 9.59703784616 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;146222355;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A146222356-146222442%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A146222356-146222442&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01835710707 0.999342424795 1.04931314702 147143508 147143594 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;147143507;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A146222356-146222442%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A147143508-147143594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGVFVAVTVRSSRDFMGFLLQARRVSDHQIAGTFVLIPPHSK Same 561213 chr4:146222356-146222442+ 503 503 13 0 242 146217013 146230318 309 309;516;989;2305;2338 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:146217013-146230318&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.48275862069 0.995423340961 19.0385758621 0.9143 4.30162758621 14.7369482759 1.00799603956 1.03837203591 664 Best 664 664;700;2226;4904;5079 46.2816413793 0.8302 16.019637931 30.2620034483 0.981469717395 1.04871516343 1402 442 442;762;1179;1402;2183 0.0 0.0 protein-coding gene protein-coding gene ENSG00000250673 517 477286 chr10:47922111-47922701+ NoOverlap chr10 47922111 47922701 + 9.88958679367 197 0.826423358852 -0.697246244659 10.5868330383 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;47922110;591;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A47922111-47922701%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A47922111-47922701&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04793373444 0.999327490728 1.0120273043 47086907 47087497 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;47086906;591;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A47922111-47922701%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A47086907-47087497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SKPLGTPYNFSEHCQDSVDVMVFIVTSYSIETVVGVLGNLCLMCVTVRQKEKANVTNLLIANLAFSDFLMCLLCQPLTAVYTIMDYWIFGETLCKMSAFIQCMSVTVSILSLVLVALERHQLIINPTGWKPSISQAYLGIVLIWVIACVLSLPFLANSILENVFHKNHSKALEFLADKVVCTESWPLAHHRTIYTTFLLLFQYCLPLGFILVCYARIYR Same 479179 chr10:47922111-47922701+ 524 524 -7 0 101 47922111 47923091 121 121;517 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:47922111-47923091&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.565143824027 0.350364963504 14.6436263959 0.8678 -0.184460406091 14.828086802 1.01806502085 1.03270402439 590 553 553;590 39.3308751269 0.9463 1.41310659898 37.9177685279 1.00667474655 1.01134462484 1000 Best 1000 1000;1054 0.951717707419 chr10:46461508-46462635- 0.98794470915 chr10:46461508-46462635- ENST00000576178.6,ENST00000479781.5 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000264717 518 500286 chr13:99015471-99015611- NoOverlap chr13 99015471 99015611 - 6.72164881356 47 0.940641755502 -0.24641486717 6.96806368073 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;99015470;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A99015471-99015611-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A99015471-99015611&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.984378411318 0.999303135034 1.05510026791 99667725 99667865 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;99667724;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A99015471-99015611-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A99667725-99667865&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNIHTLGMGCTTSVILFKGIRTVFERNCAYMCKQQGENNALEYTAYNWTKEDSELLISSWLVNAILLN Same 502299 chr13:99015471-99015611- 514 514 4 0 371 99015471 99015611 Best 518 518 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:99015471-99015611&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.397163120567 0.371541501976 10.319706383 0.9997 1.51579148936 8.80391489362 1.03725111718 1.04826479613 396 Best 396 396 15.6389574468 0.6654 1.02099361702 14.6179638298 0.976964956147 0.994145904169 1473 Best 1473 1473 0.0 0.0 ENST00000339416.6,ENST00000479769.1 CDSintron,NCintron coding exon(s) DOCK9 alternative first exon 519 542108 chr2:224982207-224982383- NoOverlap chr2 224982207 224982383 - 8.59618132195 59 0.978281497919 3.89530509609 4.70087622586 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;224982206;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A224982207-224982383-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A224982207-224982383&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00049993799 0.99917246991 0.991248728539 225846924 225847100 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;225846923;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A224982207-224982383-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A225846924-225847100&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQDAAMGCTASIVLLQAFRSVVQRSCPHICRRRQEEPSHEILPLESDDEMNRPRTLIIMVWYPW Same 543485 chr2:224982207-224982383- 477 477 42 0 372 224982207 224982383 Best 519 519 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:224982207-224982383&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.497175141243 0.549689440994 10.5693779661 0.9984 2.53618474576 8.03319322034 1.03112900829 1.03750316533 469 Best 469 469 17.4044762712 0.7104 3.70641525424 13.6980610169 0.980804109481 0.97694933157 1408 Best 1408 1408 0.0 0.0 ENST00000471810.5,ENST00000258390.11,ENST00000435582.1 NC,CDSintron,NCintron coding exon(s) DOCK10 alternative first exon 520 520805 chr17:29079734-29081017- NoOverlap chr17 29079734 29081017 - 14.817013326 428 0.838638267773 8.10102310254 6.71599022343 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;29079733;1284;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29079734-29081017-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A29079734-29081017&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.996695925213 0.999075704843 0.98335651359 27406752 27408035 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;27406751;1284;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29079734-29081017-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A27406752-27408035&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVLASSLGTALNSLSKEAPGVEERPSSVVSSLSYRKRLTLKDSIGGTGDADSLFTSLSERAASPERPPRKAHVGPREEPCPGRKSEEPEECGSVRSGTGGRAGRGPQKRWGSDFSPASTVSAPVSRASSATRRGSGEDRAGSSLSFSLSGSPGSRRSTSRLDSLSRTLSPSLSRASGLGRESPDSRLSLGRSCLEEWDDGASMALSEACSQYSHPSLARSLSVPPRPRSSASAVDEPPSSSVRSVSRHSYLDPDLEAAVNEVLSYKPVPFQRSSLEPDSEEDDRKSIQSARSAQLDPPERAASIRRSASAADVSRSRSGRKSRSRRRSGRSSSSSSSSSGSEASSEHKRRKKGRSRKSKKSKSRRKRTETESESSSSSSSGSTVSSHSCSSVKKGPAAESEETGQTHRPSRKEEKKRKKEVDSLMMRYLYRPESD Same 522223 chr17:29079734-29081017- 492 492 28 0 373 29079734 29108872 Best 520 520;11727;69598;71739 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:29079734-29108872&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.676012461059 0.702138503685 22.7779315421 0.9625 11.8454053738 10.9325261682 0.987381741188 0.990116290998 853 Best 853 853;3192;28282;39338 41.495878972 0.842 14.1132175234 27.3826614486 0.968673481492 0.997093483877 1589 Best 1589 1589;5246;19494;36829 0.0 0.0173654623575 chr1:27960070-27960362+ ENST00000532867.1,ENST00000527372.5,ENST00000527312.5 NC,CDSintron,NCintron coding exon(s) MYO18A alternative final exon 521 466062 chr1:86505617-86505736+ NoOverlap chr1 86505617 86505736 + 8.21778502166 40 0.626287098497 -9.35221749023 17.5700025119 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;86505616;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A86505617-86505736%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A86505617-86505736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.891518033619 0.998642039496 1.07789159318 86971300 86971419 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;86971299;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A86505617-86505736%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A86971300-86971419&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLSPFSLGLSASLRGLVPNTIWQTDVTQ*PSFGSFKFLHVTMDTYTGLTHATPQTGEK Same 467922 chr1:86505617-86505736+ 290 290 231 20 374 86505354 86506381 Best 521 521;1954;4201;8562;51150 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:86505354-86506381&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.45 0.336605890603 1.75685 0.1273 -4.018905 5.775755 0.0732328038206 0.926697140103 19199 Best 19199 19199;22222;23228;25766;26963 12.799695 0.1907 -11.798325 24.59802 0.880817381046 1.04923589613 2191 Best 2191 2191;3220;3562;5167;30592 0.0 0.0 not annotated fragments of a reteroviral ORF 522 577304 chr7:11111351-11111467+ NoOverlap chr7 11111351 11111467 + 9.39205385324 39 0.8921950103 5.1877795091 4.20427434414 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;11111350;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A11111351-11111467%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A11111351-11111467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08694642427 0.998414534535 0.900044008888 11150978 11151094 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;11150977;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A11111351-11111467%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A11150978-11151094&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CDECRLCYHFGCLDPPLKKSPKQTGYGWICQECDSSSSK None NA NA 0 375 11111351 11111467 Best 522 522 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:11111351-11111467&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.42735042735 0.1875 10.6088487179 0.9997 6.09559230769 4.51325641026 0.916629391821 0.825395830158 1244 Best 1244 1244 38.8035666667 0.9999 18.2776153846 20.5259512821 1.03763666519 1.02829498503 514 Best 514 514 0.0 0.0 ENST00000423760.6 NC coding exon(s) PHF14 alternative final exon 523 555091 chr3:22168836-22169018- NoOverlap chr3 22168836 22169018 - 11.4591639401 61 0.770369981251 4.3034230031 7.155740937 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;22168835;183;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A22168836-22169018-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A22168836-22169018&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.974582882423 0.998228150041 1.03958109035 22210328 22210510 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;22210327;183;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A22168836-22169018-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A22210328-22210510&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILICLFIIFLAPSDFTCVHDGESEAELIPDDFEEKPEREKKHTNFTLCNVCNIQLNSAAQAQIHYNGKSHQKRLKQLSNGTLK Same 556042 chr3:22168836-22169018- 459 459 64 0 376 22168836 22169018 Best 523 523 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:22168836-22169018&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.382513661202 0.298775510204 16.3894918033 0.9852 6.69421147541 9.69528032787 0.995329684586 1.03569679805 786 Best 786 786 36.0786885246 0.8757 8.34788360656 27.730804918 0.962432739078 1.02435409812 1671 Best 1671 1671 0.0 0.242397373035 chr2:179769530-179769755- ENST00000466511.1 NC coding exon(s) ZNF385D alternative first 2 exons 524 498690 chr13:88571725-88571997+ NoOverlap chr13 88571725 88571997 + 6.28968903914 91 0.440604257267 -0.826420891416 7.11610993055 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;88571724;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A88571725-88571997%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A88571725-88571997&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.744933864707 0.997672283375 1.05682003981 89223980 89224252 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;89223979;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A88571725-88571997%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A89223980-89224252&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STTPGIPSHLYSLFFKAILFIYSGSIIHNLNDEQDI*KIEG*FKALPFTSSSLIIGSLSLTGIPLFTGFHSKDLIFITTNTLCTNA*ALLITLIATSLTAVCSTVSFSSH Same 500707 chr13:88571725-88571997+ 465 465 59 46 377 88571657 88572214 Best 524 524;1355;2644;12802 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:88571657-88572214&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.413919413919 0.203276247208 -1.20718241758 0.0936 -2.14350769231 0.936325274725 -0.0269771033909 0.459409082265 58679 28586 28586;29351;44731;58679 33.3999362637 0.6999 2.98415164835 30.4157846154 0.948789218674 1.04265176502 1828 1232 1232;1484;1802;1828 0.0 0.798923308087 chrM:12337-14148+ pseudogene mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene (ENSG00000283130) 525 584197 chr8:54701510-54701596+ NoOverlap chr8 54701510 54701596 + 11.1710517776 29 0.804182550519 2.46670006781 8.70435170983 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;54701509;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54701510-54701596%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A54701510-54701596&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01938918992 0.997536912595 1.05482847253 55614070 55614156 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;55614069;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54701510-54701596%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A55614070-55614156&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSGEATTELRVLYQPNRCALLESALVPGHTVVFDRHGK Same 585128 chr8:54701510-54701596+ 489 489 36 0 378 54701510 54706652 Best 525 525;545;7972 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:54701510-54706652&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.528735632184 0.657844990548 18.1547793103 0.94 1.46887586207 16.6859034483 1.02630046055 1.00695617692 512 Best 512 512;762;4550 27.5149689655 0.6921 -3.75341034483 31.2683793103 1.05972491169 1.02422282091 228 Best 228 228;1160;2717 0.0 0.0 ENST00000521465.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 526 546992 chr21:7789350-7789511- NoOverlap chr21 7789350 7789511 - 11.3497462769 54 0.859436150883 1.97256290085 9.37718337609 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;7789349;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A7789350-7789511-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A7789350-7789511&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.987022597686 0.996549809066 0.999942828246 35791660 35791821 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;35791659;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A7789350-7789511-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A35791660-35791821&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NDTNSTRALKVPDGTSAAWYILTIIGIYAVIFVFRLASNILRKNDKSLEDVYYSNLTSELK Same 548408 chr21:7789350-7789511- 454 454 72 0 379 7789350 7789511 Best 526 526 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:7789350-7789511&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.493827160494 0.715909090909 12.4673481481 0.8551 1.28268333333 11.1846648148 1.05759585942 1.0403722739 177 Best 177 177 14.7152481481 0.379 0.0255537037037 14.6896944444 0.958203401921 1.00130462905 1725 Best 1725 1725 1.00049599484 chr21:34419218-34419630- 1.01440867099 chr21:34419218-34419630- ENST00000624951.1 NC protein-coding gene protein-coding gene ENSG00000278961 527 536600 chr2:206644318-206644590+ NoOverlap chr2 206644318 206644590 + 10.0164131411 91 0.901461260949 1.95124394709 8.065169194 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;206644317;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A206644318-206644590%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A206644318-206644590&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03291784014 0.99637860789 1.04522425641 207509042 207509314 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;207509041;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A206644318-206644590%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A207509042-207509314&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGIHRPLSFTCSLLIVGMCCVSPFFCHSQTDLLALSQADPQCWESSSVLLLEMWKPRVSNTVSGFWDFMIYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVGEEEK Same 537968 chr2:206644318-206644590+ 439 439 88 0 380 206644318 206644590 Best 527 527 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:206644318-206644590&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.490842490842 0.121630652707 10.8073054945 0.9792 0.531183516484 10.276121978 1.02773644308 1.05910202248 501 Best 501 501 33.8181362637 0.9657 3.25829340659 30.5598428571 1.02220394525 1.04224559429 752 Best 752 752 0.0 0.0 ENST00000441223.2,ENST00000453816.1 NC,NCintron protein-coding gene protein-coding gene ENSG00000235118 528 525229 chr18:5398651-5398812- NoOverlap chr18 5398651 5398812 - 17.3242222247 54 0.961111817547 8.50637605566 8.81784616907 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;5398650;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A5398651-5398812-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A5398651-5398812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.991355876232 0.996131492235 1.0205439629 5398650 5398811 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;5398649;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A5398651-5398812-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A5398650-5398811&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RFSKTEQVPESEVLKVGLFGPRRKSLSEWRYSQEPAFTVATAHYVTESSASRVVVTSVTHWGHSLQFQHDSF Same 526672 chr18:5398651-5398812- 481 481 47 0 226 5398651 5407505 284 284;504;528;38180 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:5398651-5407505&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.537037037037 0.685714285714 22.2178981481 0.9527 9.08358888889 13.1343092593 0.968686064139 1.01523042436 974 201 201;410;974;20747 27.4336833333 0.6806 7.54575925926 19.8879240741 1.02534393062 1.03288995313 692 Best 692 692;1608;1932;5206 0.0 0.0 ENST00000578618.5,ENST00000341928.6,ENST00000542652.6 NC,CDSintron,NCintron coding exon(s) EPB41L3 cassette exon 529 534329 chr2:89538060-89538500+ NoOverlap chr2 89538060 89538500 + 7.35007076883 147 0.427648828662 2.44373467306 4.90633609577 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89538059;441;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89538060-89538500%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89538060-89538500&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.890709621847 0.996045773646 0.995005281023 91800406 91800846 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91800405;441;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89538060-89538500%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91800406-91800846&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLPPLPWWWVVHLIHIGCSKTKSESALITFYLYVITLMMLMGAAGLAGIRIYRTDEKSLDESKNPPRKLDSDLLVGTASGSWLISWGSILAILCAEDHPHYTWYNLPYSIVVIMEKYIQNLFIFESIHREPKKLSEDIQTLRMVTVCNGNTMSLASSCLK Same 535706 chr2:89538060-89538500+ 697 697 -168 0 52 89533188 89547118 59 59;529;844;1124;3586;7862 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89533188-89547118&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.532879818594 0.358430619181 11.2525918367 0.5501 1.80615918367 9.44643265306 1.11270791618 1.04081611392 10 Best 10 10;123;831;1300;2657;4594 35.0934340136 0.7837 2.62945102041 32.4639829932 0.984475231839 0.999122108872 1357 312 312;340;1357;1759;1894;1991 0.997850975974 chr4:4197166-4198103- 1.00623004159 chr4:4197166-4198103- pseudogene Otopetrin 1 (OTPO1) unprocessed pseudogene (ENSG00000283427) 530 510363 chr16:1433101-1433358+ NoOverlap chr16 1433101 1433358 + 11.8300011511 86 0.653885461523 4.08632792013 7.74367323098 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;1433100;258;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A1433101-1433358%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A1433101-1433358&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02286451702 0.995430363648 1.04316825846 1483102 1483359 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;1483101;258;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A1433101-1433358%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A1483102-1483359&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQPLGPLAELFDYGLQQYWGSRAAAGWSLTLERKYGHITPMAQRKLPPSFWKEPTPSPLGLLHPGTPDFSDLLASWSTEACPELPGRGTPALEGARPAEA Same 512004 chr16:1433101-1433358+ 521 521 9 0 250 1432591 1433358 320 320;530;5454;34729 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:1432591-1433358&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.701550387597 0.442647058824 21.8608906977 0.9036 5.63886395349 16.2220267442 0.981079545679 1.00847424134 892 321 321;892;1694;3844 26.5837813953 0.7515 -2.6903744186 29.274155814 0.960052356709 1.0412385487 1698 417 417;1698;1787;3365 0.0 0.0414865453508 chr17:44004757-44005089+ protein-coding gene protein-coding gene ENSG00000284395 531 544392 chr20:64038643-64038750+ NoOverlap chr20 64038643 64038750 + 7.94044444958 36 0.740021871265 0.271683309227 7.66876114036 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;64038642;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A64038643-64038750%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A64038643-64038750&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.956484757317 0.995241609707 1.05507717745 62669996 62670103 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;62669995;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A64038643-64038750%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A62669996-62670103&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MRPARRRGGRRQLLLRALDAVATCWEKLFALRAPASR Same 545786 chr20:64038643-64038750+ 511 511 20 0 167 64037999 64063428 199 199;531;848;20952;33477;42298;59555;67021;69802 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:64037999-64063428&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.787037037037 1.02799552072 10.50795 0.8328 -6.49755555556 17.0055055556 1.0486679989 0.947284393054 275 Best 275 275;549;789;44125;48283;51520;58987;63113;63376 3.35843055556 0.4738 -14.0418416667 17.4002722222 0.707969081897 1.07261876421 2782 37 37;1640;2782;60631;64517;67968;69077;72284;73543 0.0 0.0 ENST00000358393.1,ENST00000450537.5 NC,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000196421 532 498082 chr13:31945974-31946174+ NoOverlap chr13 31945974 31946174 + 8.89389408257 67 0.87657159385 1.4223015622 7.47159252038 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;31945973;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A31945974-31946174%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A31945974-31946174&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.993746059159 0.994900483368 1.04165182224 32520111 32520311 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;32520110;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A31945974-31946174%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A32520111-32520311&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VANVSPTMAVDDSNLYSRTKNKLNSSQNDYKSSRRSSLPPELLIGNDIRGRLQRNIKNLDPIHLRHPKKRPSIFPGR Same 500095 chr13:31945974-31946174+ 438 438 94 0 381 31945974 31946174 Best 532 532 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:31945974-31946174&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.383084577114 0.273469387755 13.5705044776 0.9499 1.22178955224 12.3487149254 0.984181556928 1.01908178325 875 Best 875 875 18.1327985075 0.6476 -0.793450746269 18.9262492537 1.01189251685 1.04216161823 911 Best 911 911 0.0 0.0 ENST00000428783.1 NC coding exon(s) FRY alternative first exon 533 561259 chr4:20983815-20983967- NoOverlap chr4 20983815 20983967 - 8.22102547276 51 0.992667291987 3.17341363138 5.04761184138 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;20983814;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A20983815-20983967-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A20983815-20983967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02001070497 0.994841970981 0.999383791967 20985438 20985590 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;20985437;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A20983815-20983967-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A20985438-20985590&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTPSTPKGSGGWDALPAQRMLTLEWESEGLQTVGIVVIICASLKLLHLLGLIDFSEGK Same 562250 chr4:20983815-20983967- 545 545 -12 0 382 20983815 20983967 Best 533 533 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:20983815-20983967&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.490196078431 0.240188383046 6.07123137255 0.9986 0.79118627451 5.28004509804 0.776932185205 0.930829060065 1768 Best 1768 1768 9.4728 0.748 2.06631176471 7.40648823529 0.63422748871 0.811744687498 3047 Best 3047 3047 0.0 0.0 ENST00000382149.8,ENST00000382148.7,ENST00000509207.1,ENST00000515786.2 NC,CDSintron,UTR5intron,NCintron coding exon(s) KCNIP4 alternative first exon 534 469305 chr1:228313613-228313876+ NoOverlap chr1 228313613 228313876 + 9.1203227436 88 0.754681398559 5.24432267181 3.87600007179 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;228313612;264;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A228313613-228313876%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A228313613-228313876&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04454758093 0.994817409432 0.949878407148 228501314 228501577 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;228501313;264;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A228313613-228313876%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A228501314-228501577&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAQSCGLQGVPASPSFLPSCAEAVPCLVRGLQNVDVFAGEVATFSCEVSHAGGPEARWWLDGTLLQDGPQSAIAVRDGIFHSLMLSGLGVADSGTVIFRAGPLVSTAKLLIK Same 471183 chr1:228313613-228313876+ 512 512 22 0 262 228313613 228315088 341 341;534 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:228313613-228315088&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.620122667363 11.2783431818 0.9609 3.52187272727 7.75647045455 1.03039872012 1.03065817707 477 Best 477 477;496 29.3479534091 0.9698 4.05524090909 25.2927125 1.04058462535 1.04594243965 471 Best 471 471;486 0.0 0.104614412288 chr1:228280179-228280445+ ENST00000284548.15 CDSintron pseudo-exon OBSCN has two pseudo-exons 535 463015 chr1:6066065-6066244+ NoOverlap chr1 6066065 6066244 + 12.1169118797 60 0.807827115282 5.38500999858 6.7319018811 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;6066064;180;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6066065-6066244%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A6066065-6066244&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.949459508784 0.994779762243 1.03850613871 6126125 6126304 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;6126124;180;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6066065-6066244%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A6126125-6126304&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGLSMQVSFVCSEHSLKGRGPEDRLGRPAASSPSLGSRGRFRAVAMVARSLGQLSVQSLPCAGDTSVK Same 464879 chr1:6066065-6066244+ 476 476 59 0 383 6066065 6066244 Best 535 535 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:6066065-6066244&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.722222222222 0.683111954459 18.8268633333 0.9335 7.76961166667 11.0572516667 0.980450764333 1.0287602175 897 Best 897 897 48.70247 0.8946 21.31003 27.39244 0.963682655156 1.00989515228 1653 Best 1653 1653 0.0 0.0904130714367 chr17:7929194-7929435- ENST00000164247.5,ENST00000458166.6,ENST00000435937.5 CDSintron,UTR5intron,NCintron pseudo-exon KCNAB2 pseudo-exon 536 588883 chr9:35834460-35834651+ NoOverlap chr9 35834460 35834651 + 12.828287527 64 0.91495932517 7.80511089368 5.02317663329 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35834459;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35834460-35834651%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35834460-35834651&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.92628153688 0.994721262529 0.997726286769 35834457 35834648 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35834456;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35834460-35834651%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35834457-35834648&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPLSCPAPFSLSCFPGGLFLTDYSTCSPRKLSPFRSFASTELFHFHVPEDTFLAVWNLIIFKEQGGTFGDHCPDQSVTV Same 589827 chr9:35834460-35834651+ 504 504 32 0 277 35829249 35842438 362 362;425;536;1007;2241;12378;33483;41023;50301;66958 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35829249-35842438&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.546875 0.214605067064 16.8461421875 0.959 10.099309375 6.7468328125 1.02035999223 0.978850224819 571 527 527;571;572;815;1277;3226;54814;57000;63888;72554 38.8898046875 0.9185 19.6887265625 19.201078125 1.00752935004 1.00176317676 986 753 753;986;1017;1241;1441;19083;51774;53783;58586;72919 0.0 0.0835694379512 chr16:377671-377848- ENST00000377988.6,ENST00000472010.1,ENST00000377996.5,ENST00000464519.6 UTR5,NC,UTR5intron,NCintron coding exon(s) TMEM8B 5' extension by 5 exons 537 516765 chr17:27456626-27456877+ NoOverlap chr17 27456626 27456877 + 8.61096305215 84 0.732024690551 3.94702980011 4.66393325204 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;27456625;252;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27456626-27456877%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A27456626-27456877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04006819944 0.994576250802 0.999226324643 25783652 25783903 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;25783651;252;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27456626-27456877%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A25783652-25783903&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGSQPRPPRPRCRGMDRAALRAAAMGEKKEGGGGGDAAAAEGGAGAAASRALQQCGQLQKLIDISIGSLRGLRTKCAVSNDLTQQEIRTLEVSGSGTR Same 518154 chr17:27456626-27456877+ 500 500 37 0 384 27456338 27456877 Best 537 537;12116;24649;64231 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:27456338-27456877&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.718253968254 0.919245283019 9.7186702381 0.8109 3.15140119048 6.56726904762 0.956409960162 0.998817663214 1054 Best 1054 1054;13407;16864;37001 14.1592630952 0.7639 -1.79463571429 15.9538988095 0.988091726415 1.02315120617 1306 Best 1306 1306;11778;31000;38952 0.0 0.198598271897 chr12:117968076-117968255- ENST00000580163.5,ENST00000579309.1 UTR5,NC coding exon(s) KSR1 alternative first exons 538 512662 chr16:85357463-85357594+ NoOverlap chr16 85357463 85357594 + 6.62174097381 44 0.653479403788 -1.31137501923 7.93311599303 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;85357462;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85357463-85357594%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A85357463-85357594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.796113163552 0.994448893389 1.05189590037 85391069 85391200 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;85391068;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85357463-85357594%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A85391069-85391200&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESIHASSPAGMAQAHCVHLFSFQPVCGSLEASAASHPPTRESETRPRAPTETLPRGPRMAQELRPAQCLQSSR Same 514307 chr16:85357463-85357594+ 590 590 -52 0 385 85357463 85357594 Best 538 538 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:85357463-85357594&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 0.383164005806 9.70368863636 0.9587 -5.25264318182 14.9563318182 1.06394022565 0.974555668119 116 Best 116 116 12.967825 0.38 -3.51736818182 16.4851931818 0.947872925387 1.03096959511 1836 Best 1836 1836 0.0 0.0 ENST00000568080.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 539 510302 chr16:540187-540369+ NoOverlap chr16 540187 540369 + 8.75827210897 61 0.745827220344 3.68556720873 5.07270490024 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;540186;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A540187-540369%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A540187-540369&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02412713345 0.993799756234 1.0118537232 590187 590369 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;590186;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A540187-540369%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A590187-590369&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAMGSSASSLAAETESDHSFPGGPPYPGPPAAAGWCRSGPGGPVWGGALVSRQHQPPRPRAR Same 511943 chr16:540187-540369+ 507 507 32 0 386 540187 540369 Best 539 539 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:540187-540369&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.775956284153 0.545508744038 11.028447541 0.9412 1.88629016393 9.14215737705 1.02332700028 1.0505096409 547 Best 547 547 25.3474245902 0.8144 6.8621147541 18.4853098361 1.0296850358 1.02502850859 627 Best 627 627 0.0 0.00831462450826 chr16:725966-726085- ENST00000219611.6 UTR5intron coding exon(s) CAPN15 5' exon 540 485943 chr11:111460211-111460348+ NoOverlap chr11 111460211 111460348 + 6.9334326495 46 0.853338242758 0.651819440334 6.28161320916 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111460210;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111460211-111460348%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111460211-111460348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00341384387 0.99373123997 1.04357495964 111330936 111331073 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111330935;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111460211-111460348%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111330936-111331073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQWWAWHPTGLIPISIGAQAIDPWTRKPGPVIGAQTDLSARVVVPVVQVLEALPR Same 487901 chr11:111460211-111460348+ 464 464 76 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.565217391304 0.363157894737 7.92308695652 0.9792 1.10578913043 6.81729782609 0.898218829499 0.998487122273 1297 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 19.8532586957 0.696 2.53619347826 17.3170652174 1.0456717956 1.02330118411 396 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 pseudogene unitary pseudogene ENSG00000255093 541 557795 chr3:184499723-184499860- NoOverlap chr3 184499723 184499860 - 4.82532600346 46 0.777233207612 -3.9169956491 8.74232165256 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;184499722;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184499723-184499860-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A184499723-184499860&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.688993544889 0.99361863535 1.04205678619 184217511 184217648 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;184217510;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184499723-184499860-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A184217511-184217648&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELFSVPPFLVSLVLTIKVWVPDQPQLWVLKTWVGLGLSNWMLQLCVLMFAPPSGQPCR Same 558766 chr3:184499723-184499860- 485 485 56 0 22 184499610 184500370 22 22;541;811;1939;2622;7155;17966 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:184499610-184500370&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.63768115942 0.142635658915 11.7500086957 0.99 -7.93406956522 19.6840782609 1.06817050905 0.910870404111 97 35 35;97;1016;1294;1807;1985;2257 17.3402086957 0.4795 -7.99586956522 25.3360782609 1.12075449062 1.03002792185 17 Best 17 17;96;2057;2581;2827;2852;3634 0.0 0.306629979124 chr1:182399664-182400485- ENST00000444495.1 AntiCDSintron pseudogene transmembrane epididymal protein 1 (TEDDM1) pseudogene (ENSG00000283625) 542 480570 chr10:46625814-46626008- NoOverlap chr10 46625814 46626008 - 5.29166153601 65 0.533806363012 -2.48635846055 7.77801999656 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;46625813;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A46625814-46626008-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A46625814-46626008&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.604067182872 0.993529315165 1.05205725548 46923803 46923609 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;46923802;-193;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A46625814-46626008-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A46923803-46923609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GYIWEFKYLFVQRNYTLENLELHTTPWSSCECLFDDDIRAITFKAKFQKSAPSFVKISDLATHLEDK Same 482481 chr10:46625814-46626008- 643 643 -101 0 387 46625814 46626008 Best 542 542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:46625814-46626008&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.364102564103 0.309523809524 7.95936615385 0.9562 -4.74579076923 12.7051569231 1.00038950637 1.02390426574 736 Best 736 736 15.9492276923 0.6473 -6.30763846154 22.2568661538 1.00829851349 1.05203268768 973 Best 973 973 0.970686029254 chr10:87175889-87176095+ 0.963382522308 chr10:87175889-87176095+ ENST00000475914.1,ENST00000497389.6 NC,NCintron pseudogene extension FAM35BP additional exon (ENSG00000165874) 543 518401 chr17:55962062-55962160+ NoOverlap chr17 55962062 55962160 + 8.75262134161 33 0.95280245809 1.67700597734 7.07561536427 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;55962061;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A55962062-55962160%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A55962062-55962160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02929070215 0.99345922102 1.04366100354 54039423 54039521 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;54039422;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A55962062-55962160%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A54039423-54039521&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EMLCLEKLVGLLLKNQRKSDACKKGPWKSQRYTVTGNR Same 519807 chr17:55962062-55962160+ 543 543 0 0 388 55962062 55965666 Best 543 543;3533 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:55962062-55965666&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.494949494949 0.727941176471 12.6132242424 0.9987 -0.528287878788 13.1415121212 1.06201340193 1.04352108107 132 Best 132 132;1563 13.8550969697 0.384 -1.43745757576 15.2925545455 0.846991838422 0.993268815852 2325 Best 2325 2325;3486 0.0 0.0 coding exon(s) ANKFN1 cassette exon 544 537079 chr2:230990768-230990950+ NoOverlap chr2 230990768 230990950 + 6.12713936667 61 0.609802545755 -0.966078711826 7.0932180785 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;230990767;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230990768-230990950%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A230990768-230990950&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.789656154528 0.992466861052 1.0564969043 231855483 231855665 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;231855482;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230990768-230990950%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A231855483-231855665&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAPQHPPERGAQLLLVLCRASALLTQLLRLQLLLQQQHARDRRPPAALVGIVVQPQQEEEAEARRR Same 538449 chr2:230990768-230990950+ 618 618 -74 0 389 230990378 230991124 Best 544 544;1686;3814;7506;61923 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:230990378-230991124&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.75956284153 0.985093167702 9.20150327869 0.7433 -1.56858360656 10.7700868852 1.01864269348 1.05478665312 581 Best 581 581;2118;2325;2832;27472 7.63175081967 0.3215 -3.90153770492 11.5332885246 0.601832251117 0.952278726344 3158 Best 3158 3158;3262;3882;4170;35218 0.0 0.0 ENST00000414876.5 AntiNCintron coding exon(s) SPATA3 alternative first exon 545 584199 chr8:54706440-54706652+ NoOverlap chr8 54706440 54706652 + 7.58894223767 71 0.857313960823 0.525198625847 7.06374361182 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;54706439;213;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54706440-54706652%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A54706440-54706652&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.994020316919 0.992408991324 1.05062185692 55619000 55619212 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;55618999;213;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54706440-54706652%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A55619000-55619212&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HEPVTDCLSVLFVALKGVFLNSAVVLLATSLCQALCLQPDGSCTGVGSQSEKSYWKVHKISSGICMFESVKNAQMYLRIKDGRCDGTVSICSCFSQQMFK Same 585130 chr8:54706440-54706652+ 444 444 101 0 378 54701510 54706652 525 525;545;7972 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:54701510-54706652&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.478873239437 0.170331867253 9.23482676056 0.9409 -2.03858028169 11.2734070423 0.997719082322 1.04867706866 762 512 512;762;4550 14.9749605634 0.6882 -5.77505492958 20.750015493 0.996787494044 1.05918526347 1160 228 228;1160;2717 0.0 0.0 ENST00000521465.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 546 561982 chr4:81602851-81602922- NoOverlap chr4 81602851 81602922 - 7.15869581078 24 0.823875282928 -6.19458749021 13.353283301 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;81602850;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A81602851-81602922-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A81602851-81602922&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.73634110271 0.992326514293 0.952926769141 82524005 82524076 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;82524004;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A81602851-81602922-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A82524005-82524076&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HIPEISLSVFPFLQEQQWKPSMYSSITPVCFPSPLIEKPIGK Same 562974 chr4:81602851-81602922- 467 467 79 0 390 81602851 81602922 Best 546 546 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:81602851-81602922&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.458333333333 0.0 10.4627875 0.9633 -5.52888333333 15.9916708333 0.928844889859 1.00941158617 1198 Best 1198 1198 10.4627875 0.3011 -5.52888333333 15.9916708333 0.550388373312 0.991634388252 3346 Best 3346 3346 0.0 0.0 ENST00000514050.5,ENST00000512716.1 NC,UTR5intron coding exon(s) RASGEF1B 5' exons 547 500740 chr14:22463066-22463155+ NoOverlap chr14 22463066 22463155 + 6.26840659032 30 0.915580987259 -3.80033996503 10.0687465553 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22463065;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22463066-22463155%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22463066-22463155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.806998462459 0.992318717122 1.02625366825 22932058 22932147 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22932057;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22463066-22463155%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22932058-22932147&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNK None NA NA 0 391 22462955 22464286 Best 547 547;1170;3018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22462955-22464286&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4 0.0 12.5163333333 0.9827 -0.03429 12.5506233333 1.02952587816 1.05453917415 485 Best 485 485;953;1560 14.7163366667 0.4237 -5.72005333333 20.43639 0.953054472917 1.05565448507 1794 Best 1794 1794;2374;2534 0.0 0.0 ENST00000390477.2,ENST00000611204.4,ENST00000556777.1,ENST00000514473.2 NC,NCintron,AntiNC,AntiNCintron immunoglobulin segment overlaps an immunoglobulin region 548 486444 chr11:123491841-123491942+ NoOverlap chr11 123491841 123491942 + 7.66851473381 34 0.754781234993 -0.670141128933 8.33865586274 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;123491840;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A123491841-123491942%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A123491841-123491942&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.927403484777 0.992291864757 1.05424288391 123362549 123362650 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;123362548;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A123491841-123491942%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A123362549-123362650&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQLPCGQPSPEPSMVQNLQPETVSCSTAVKQACHYHVSSLRKKLAFLR Same 488406 chr11:123491841-123491942+ 523 523 25 0 392 123491841 123491942 Best 548 548 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:123491841-123491942&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.558823529412 0.253101736973 11.2601029412 0.9174 -3.92346764706 15.1835705882 1.03444250459 0.997993292307 427 Best 427 427 15.467 0.4201 -2.90814705882 18.3751470588 0.985322052807 1.03878314911 1342 Best 1342 1342 0.0 0.0 ENST00000633087.1,ENST00000633646.1 CDSintron,UTR5intron coding exon(s) GRAMD1B first exon 549 591151 chr9:137218066-137218593+ NoOverlap chr9 137218066 137218593 + 9.38962948839 176 0.742716071218 0.0590482952327 9.33058119315 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;137218065;528;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A137218066-137218593%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A137218066-137218593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0383582763 0.991931536569 1.03601235867 140112518 140113045 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;140112517;528;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A137218066-137218593%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A140112518-140113045&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EQAAGQGEEEECPICTEPYGPRERRLALLNCSHGLCVGCLHRLLGSASSADLGRVRCPLCRQKTPVLEWEICRLQEELLQADGPSRQPRREAPASYHRNPGPWGSLEHRYQLRFLAGPVGGRGCLPFLPCPPCLGARLWTLRERGPCARRLALLSLLALELLGLLLVFTPLLLLGLLFVLLDRSGR Same 592106 chr9:137218066-137218593+ 609 609 -60 0 393 137217946 137221875 Best 549 549;5833;50675 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:137217946-137221875&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.717803030303 0.515653775322 19.6421568182 0.8802 2.59224659091 17.0499102273 0.967278764718 1.01063691597 985 Best 985 985;20938;24037 19.9120857955 0.605 -3.60164943182 23.5137352273 1.0448898989 1.06144135188 404 Best 404 404;15581;35939 0.0 0.13029674834 chr1:19814418-19815101- protein-coding gene protein-coding gene ENSG00000284976 550 562300 chr4:103142571-103142621- NoOverlap chr4 103142571 103142621 - 7.40472369685 17 0.88618834121 -9.87611171779 17.2808354146 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;103142570;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A103142571-103142621-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A103142571-103142621&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.515342177555 0.99167518701 0.963906533491 104063728 104063778 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;104063727;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A103142571-103142621-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A104063728-104063778&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLEAWNVTLESVETQKLRLTQKLHENLQDVR Same 563295 chr4:103142571-103142621- 490 490 60 0 394 103142463 103142621 Best 550 550;646 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:103142463-103142621&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.352941176471 0.0 6.47013529412 0.9486 -16.3299470588 22.8000823529 0.650003017662 0.936527103085 2305 1975 1975;2305 8.10814117647 0.3971 -16.6164882353 24.7246294118 0.561768927993 1.07579590995 3300 3091 3091;3300 0.0944746802299 chr4:103140814-103141104- 0.228380828797 chr4:103144331-103144618- ENST00000265148.7 CDSintron pseudo-exon CENPE pseudo exon 551 479250 chr10:122798876-122799046+ NoOverlap chr10 122798876 122799046 + 10.1588246017 57 0.819283655847 0.336275342198 9.82254925952 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122798875;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122798876-122799046%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122798876-122799046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00597478344 0.991538757319 0.979122837116 124558392 124558562 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124558391;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122798876-122799046%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124558392-124558562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VEVYHANAWGTVCDDSWSIEDAHVVCRQLGCGLAVSALPGASFSPGSGSILLDDVNCTGRESSLGQCPHR Same 481155 chr10:122798876-122799046+ 475 475 76 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.637426900585 0.288461538462 16.0761684211 0.8292 -3.09641052632 19.1725789474 1.03333343047 0.944962998712 441 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 58.1221912281 0.941 -3.33911403509 61.4613052632 0.967464107635 0.982363758473 1607 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.271728386848 chr10:122592272-122592595+ 0.231621327048 chr12:7369357-7369665- ENST00000605982.1 NC pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 552 524737 chr18:58255614-58256153+ NoOverlap chr18 58255614 58256153 + 10.1348594442 180 0.763524155879 2.435807744 7.69905170024 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;58255613;540;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A58255614-58256153%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A58255614-58256153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03918414855 0.991495857764 1.04917504913 55922846 55923385 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;55922845;540;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A58255614-58256153%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A55922846-55923385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLAVSGLLLPLALALLAPLVTMAHRLRFHFGSGRSNTAPESDILDQEREDDFFMAFHTLPRRSSPHPFAQNGGEDGGGGLQGGVGALKRSSSMFIPQLLTSIDARPTCSSSVQISLQRKATDGATDGCGPPEGADDGPPCATPDPRDQASATATTRASPQSGSREPSPRDTPGSSPPRAARDPGLQVNGTCGR Same 526180 chr18:58255614-58256153+ 529 529 23 0 369 58255504 58256765 513 513;552;42317 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:58255504-58256765&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.698148148148 0.752730996814 17.1184777778 0.8815 5.56656944444 11.5519083333 0.998715573572 1.05110374031 751 538 538;751;12425 30.2768833333 0.8395 9.47029555556 20.8065877778 0.995498923226 0.986948239763 1184 Best 1184 1184;1291;69046 0.0 0.0 ENST00000256830.13,ENST00000431212.6,ENST00000585323.5 CDSintron,UTR5intron,NCintron coding exon(s) NEDD4L alternative first coding exon. This CDS was not subjected to further analysis as it was reclassified as coding once this work was completed. 553 557278 chr3:155290950-155291024- NoOverlap chr3 155290950 155291024 - 8.52075600863 25 0.821402914473 -5.08496394634 13.605719955 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;155290949;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A155290950-155291024-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A155290950-155291024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.870297151631 0.991464974828 0.955110772639 155008739 155008813 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;155008738;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A155290950-155291024-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A155008739-155008813&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGSTFSHLLVPILLLIGWIVGCIIMIYVVFS Same 558247 chr3:155290950-155291024- 497 497 56 0 395 155290950 155291024 Best 553 553 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:155290950-155291024&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.426666666667 0.0 14.54704 0.9706 -7.336856 21.883896 1.01011612578 0.955891865546 654 Best 654 654 23.489176 0.485 -6.841084 30.33026 0.991595102822 1.03072785934 1252 Best 1252 1252 0.0 0.0 ENST00000489090.1 NC protein-coding gene protein-coding gene ENSG00000240045 554 549838 chr22:30968825-30968902- NoOverlap chr22 30968825 30968902 - 4.11537694931 26 0.783533167832 -8.70543837089 12.8208153202 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30968824;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30968825-30968902-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30968825-30968902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.303134313429 0.990961971555 0.943920561283 31364811 31364888 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31364810;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30968825-30968902-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31364811-31364888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGARAARGRRRRQRRRRRRRQQHMVPR Same 551179 chr22:30968825-30968902- 410 410 144 0 396 30968818 30969787 Best 554 554;2215;5416;5709;10618;10639;64375;71711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968818-30969787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.858974358974 1.33714285714 0.188069230769 0.7047 -17.37565 17.5637192308 0.528460801283 1.00778164939 2943 Best 2943 2943;3632;14102;33814;35661;50818;50890;52885 1.10135384615 0.2528 -17.6634269231 18.7647807692 0.411093851078 1.0766550913 3899 Best 3899 3899;7559;12847;33921;34528;35006;48262;54755 0.0 0.0 under investigation; now made coding Identifies a putative CDS within exonic sequence of lncRNA TUG1. The STOP codon and reading frame are conserved in mammals, although no ATG initiation codon has been found. The 5' NPR terminus falls close to a [CTG] codon that is conserved in mammals, which would demarcate a single exon 153aa CDS [chr22:30969357-30969818]. This translation has now been experimentally confirmed by Lewandowski et al in a manuscript submitted to bioRxiv (https://www.biorxiv.org/content/10.1101/562066v1), and TUG1 will be annotated as a protein-coding gene in GENCODEv32. 555 579973 chr7:152176246-152176287+ NoOverlap chr7 152176246 152176287 + 6.22818568642 14 0.950102998398 -9.94959982804 16.1777855145 ENST00000262189.10,ENST00000355193.6,ENST00000360104.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;152176245;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A152176246-152176287%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A152176246-152176287&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.225629110743 0.990688081187 0.945206291193 151873331 151873372 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;151873330;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A152176246-152176287%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A151873331-151873372&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLTNHGLHLSLLLLFLPFLIQKIL Same 580942 chr7:152176246-152176287+ 621 621 -66 0 397 152163143 152176287 Best 555 555;1572;3794;66217 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:152163143-152176287&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.452380952381 0.0 5.04105 1.0 -15.7195285714 20.7605785714 0.550225835389 0.949836744338 2815 Best 2815 2815;5783;19575;57298 -1.61870714286 0.9984 -36.4206571429 34.80195 0.326170385923 0.982718365576 4389 Best 4389 4389;6920;21646;46222 0.0 0.0 ENST00000262189.10,ENST00000473186.5 AntiCDS,AntiNC not annotated potentially spurious 556 481973 chr10:102450572-102450766- NoOverlap chr10 102450572 102450766 - 9.18439845065 65 0.806885105434 0.740667769771 8.44373068087 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102450571;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102450572-102450766-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102450572-102450766&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00285422288 0.989915294375 1.01936601968 104210329 104210523 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104210328;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102450572-102450766-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104210329-104210523&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPCAAAGISGLSLQAPAAVAESWAPWPEGGSLQTELRWGRVERARGPPLQLPDFVRRELRRAYGTYPRADVRVTQRRGQFLLQATPRVLEPDHR Same 483890 chr10:102450572-102450766- 480 480 76 0 356 102450527 102451009 493 493;556;10070 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102450527-102451009&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.789743589744 1.15112160567 11.5559584615 0.8046 0.984989230769 10.5709692308 1.04874478974 1.04644631944 272 Best 272 272;1756;5436 19.0890523077 0.4456 4.04145846154 15.0475938462 1.03470586786 0.996989307952 566 Best 566 566;3183;3758 0.0 0.163550502449 chr17:42543028-42544238+ ENST00000625129.1,ENST00000596045.1,ENST00000473970.2 NC,AntiNC,AntiNCintron protein-coding gene protein-coding gene ENSG00000120055 557 495230 chr12:51197770-51198024- NoOverlap chr12 51197770 51198024 - 12.2086859384 85 0.857389360871 6.32257175507 5.88611418333 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;51197769;255;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51197770-51198024-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A51197770-51198024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.999407533418 0.989739707502 1.0304277879 51591553 51591807 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;51591552;255;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51197770-51198024-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A51591553-51591807&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APLSLPCSIAAAVLNTALPAPVQAAAPVQASSTAQPRPPAQPQTLFQTQPLLQTTPAILPQPTAATAAAPTPKPVDTPPQITVQPAGFAFSPGIVSCCPHPGLTR Same 497227 chr12:51197770-51198024- 544 544 13 0 215 51196844 51218124 265 265;283;557;693;1092;2383;53800;58134;68865;69357 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:51196844-51218124&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.674509803922 0.515151515152 17.4065294118 0.9659 7.55039294118 9.85613647059 0.985601339011 1.03892888526 867 69 69;438;866;867;1487;2229;24410;46155;50649;71456 25.7404282353 0.5891 6.14832705882 19.5921011765 0.981758388455 1.02863998227 1392 172 172;288;697;1392;1579;3071;9854;33434;34785;72898 0.0 0.0 ENST00000333640.10,ENST00000552305.1 UTR5,NC coding exon(s) POU6F1 first coding exons 558 582882 chr7:142812744-142812824- NoOverlap chr7 142812744 142812824 - 12.0067740635 27 0.871725880149 -1.95965921437 13.9664332778 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142812743;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142812744-142812824-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142812744-142812824&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00386897329 0.989690167348 0.977512571734 142510429 142510509 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142510428;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142812744-142812824-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142510429-142510509&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQTIHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGR None NA NA 0 398 142797471 142812824 Best 558 558;912;6988;8200 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142797471-142812824&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.604938271605 0.27 15.6076740741 0.9999 -7.39332962963 23.0010037037 1.05356590567 0.967002421113 215 Best 215 215;415;3289;15234 20.4738074074 0.581 -10.4970518519 30.9708592593 1.05191677465 1.00801480999 300 231 231;300;4131;46564 0.0 0.0 ENST00000417977.2 NC immunoglobulin segment overlaps an immunoglobulin region 559 486547 chr11:125955059-125955172+ NoOverlap chr11 125955059 125955172 + 11.798986899 38 0.783349194685 8.35740800751 3.44157889152 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125955058;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125955059-125955172%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125955059-125955172&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06839782456 0.989360463175 0.821206555097 125824954 125825067 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125824953;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125955059-125955172%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125824954-125825067&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FCSGSKPWNLCSPLLADPPFSAYPAVLGAAGTGMVVATVASLLVFQYAARHPETFPR Same 488509 chr11:125955059-125955172+ 540 540 19 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.640350877193 0.427927927928 12.2471105263 0.9598 10.0585421053 2.18856842105 0.832254779391 0.621801827431 1547 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 32.4722657895 0.7157 18.7809921053 13.6912736842 1.0605668315 0.929297829263 221 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0 ENST00000524962.2 NCintron protein-coding gene protein-coding gene ENSG00000283703 560 463038 chr1:6455463-6455543+ NoOverlap chr1 6455463 6455543 + 9.0742000794 27 0.773296711681 -5.38410742746 14.4583075069 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;6455462;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6455463-6455543%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A6455463-6455543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.915375280793 0.989134233215 0.944608348914 6515523 6515603 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;6515522;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6455463-6455543%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A6515523-6515603&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPASNSEAHSPDERLRQLLRQRQAVGKLLGHWRSLLRRVPASPGLAHGLYWPQHFLPPLDGGAPPHYDSLTLDLFMLGYFQLLEMGLSR Same 464902 chr1:6455463-6455543+ 494 494 66 0 194 6447414 6467425 235 235;370;505;560;639;1215;12903;51895 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:6447414-6467425&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.765432098765 0.788108108108 15.6398740741 0.7968 -2.43056666667 18.0704407407 0.933990020426 0.980040734998 1170 395 395;511;536;884;1170;1602;50220;68713 38.6341740741 0.878 -3.36171481481 41.9958888889 1.01374579736 0.978885090873 876 638 638;851;876;1267;1741;2000;23707;36104 0.0 0.306005724707 chr2:238130128-238131732+ ENST00000377828.5,ENST00000477679.1 CDSintron,NCintron coding exon(s) ESPN very large alternative final exon 561 550281 chr22:40552101-40552358- NoOverlap chr22 40552101 40552358 - 10.863760456 86 0.898907028199 3.74123601026 7.12252444569 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;40552100;258;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A40552101-40552358-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A40552101-40552358&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00824563772 0.988763891589 1.04848492437 40948105 40948362 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;40948104;258;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A40552101-40552358-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A40948105-40948362&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TFHFFFHFQIAITKAKVDFSSVVCLPPSVIAVNGLDGGGAGENDDEPVLVSLSAAPSPQSEAVANELQELSLQPELTLGLHPGRNPNLPPLSERKNGE Same 551628 chr22:40552101-40552358- 505 505 56 0 399 40552101 40552358 Best 561 561 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:40552101-40552358&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.573643410853 0.424342105263 13.4043046512 0.9961 5.79188604651 7.61241860465 1.03516341187 1.0214250057 416 Best 416 416 23.7683662791 0.6931 8.2820872093 15.4862790698 1.02366098568 0.983972630492 727 Best 727 727 0.0 0.0769792270132 chr16:14140607-14140760+ ENST00000355630.7,ENST00000463769.6,ENST00000616875.1 UTR5,NC,AntiNCintron under investigation MKL1 potential non-ATG start 562 491550 chr12:52079876-52080025+ NoOverlap chr12 52079876 52080025 + 13.756140027 50 0.837969634546 1.88675209761 11.8693879294 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52079875;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52079876-52080025%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52079876-52080025&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.978158506089 0.988556392983 0.953366038741 52473660 52473809 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52473659;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52079876-52080025%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52473660-52473809&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WSMNGSQAGAAAQAAWLSSCCNQSASPPEPPEGPRAVQAVVLGVLSLLVLCGVLFLGGGLLLRAQGLTALLTREQRASREPEPGSASGEDGDDDS Same 493528 chr12:52079876-52080025+ 526 526 36 0 400 52079777 52080025 Best 562 562;2824 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52079777-52080025&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.773333333333 0.936663693131 19.226702 0.9136 2.847212 16.37949 0.999868445423 0.964796995864 739 Best 739 739;2236 21.166084 0.5316 -1.485624 22.651708 1.10350936306 1.04371858485 47 Best 47 47;3701 0.0 0.207645340536 chr17:46978645-46979007- ENST00000546390.1,ENST00000550301.1 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000284791 563 655945 chr17:78048844-78049062+ Extension chr17 78048844 78049062 + 7.41430280021 73 0.867386558056 0.489464416488 6.92483838372 chr17:78048844-78050511+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;78048843;219;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A78048844-78049062%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A78048844-78049062&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.990721503917 0.988137479063 1.05236396849 76044925 76045143 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;76044924;219;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A78048844-78049062%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A76044925-76045143&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VENLILNFVSSFSDLSHSGLADHYENSHWGQQPTYRSEANCSWDKVIIDRTDKEAWPSITGTETESASECTTDTDSASNCGSENSSMATGSAQGNFTGHTK Same 656570 chr17:78048844-78049062+ 463 463 100 0 401 78048844 78051364 Best 563 563;7495 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:78048844-78051364&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.48401826484 0.15614973262 11.553990411 0.9889 -0.0643342465753 11.6183246575 0.997298651151 1.03705557478 767 Best 767 767;17345 15.0686972603 0.9147 -7.10880136986 22.1774986301 1.03579324341 1.06075600159 541 Best 541 541;64918 0.0 0.0796407785923 chr16:24789232-24791817+ ENST00000301624.8,ENST00000585438.1 Extension5p,UTR5intron not annotated potentially spurious 564 720736 chr7:100889272-100889445- Extension chr7 100889272 100889445 - 12.1602154991 58 0.776212763383 3.9973603672 8.16285513187 chr7:100888993-100889445- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100889271;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100889272-100889445-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100889272-100889445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.968313379255 0.988057469122 1.02659165087 100486893 100487066 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100486892;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100889272-100889445-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100486893-100487066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPVRLALLSGHYLYYHYGCDGLDDRGWGCGYRTLQTLCSWPEGQPAGVPGLAAVQAALEDMGDKPPGFR Same 721333 chr7:100889272-100889445- 509 509 55 0 402 100882699 100896048 Best 564 564;2139;2309;3733;10134;33066;33794;47001;47408;61791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100882699-100896048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.724137931034 0.833795712484 20.21115 0.9518 6.8522137931 13.3589362069 0.951484655459 1.00452415804 1085 Best 1085 1085;2762;12277;14242;15089;33604;35393;48431;52932;53395 30.5373293103 0.7589 4.62293275862 25.9143965517 0.948673379296 1.03277259867 1829 Best 1829 1829;3172;9515;15507;19629;23787;40273;49567;60478;62610 0.0 0.0574782831843 chr19:39873224-39873795- ENST00000388761.3 Extension5p pseudo-exon UFSP1 is a retrogene that has apparently evolved to use a downstream ATG, so this is 5' pseudo-exon sequence 565 622594 chr11:57647108-57647203- Extension chr11 57647108 57647203 - 13.1324562542 32 0.778820000763 8.56128439493 4.57117185928 chr11:57646967-57647203- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57647107;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57647108-57647203-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57647108-57647203&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04439140453 0.987855252253 0.880093691345 57414581 57414676 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;57414580;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57647108-57647203-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A57414581-57414676&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NTALANLLRCFTCDRLCGGCTAPAPPAHQGIVLQPVMPSCDPGPGPACLPTK Same 623281 chr11:57647108-57647203- 539 539 26 0 403 57638680 57647203 Best 565 565;59332 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57638680-57647203&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.71875 0.610909090909 19.541871875 0.972 12.84818125 6.693690625 1.03353122916 0.907930391672 439 Best 439 439;6947 25.0771625 0.8143 10.318628125 14.758534375 1.0168154025 0.947965385618 822 Best 822 822;17272 0.0 0.36281601197 chr16:30095252-30095482- ENST00000300022.7,ENST00000524592.1,ENST00000525988.1 Extension5p,NC,AntiNCintron coding exon(s) YPEL4 extended to upstream initiation codon 566 682552 chr20:33667087-33667497+ Extension chr20 33667087 33667497 + 8.25164157677 137 0.697253320369 3.70425985671 4.54738172006 chr20:33667087-33667698+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;33667086;411;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A33667087-33667497%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A33667087-33667497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.970703448681 0.987719301242 0.959790122161 32254893 32255303 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;32254892;411;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A33667087-33667497%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A32254893-32255303&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VASVSGSRRVHRPSSLGRIAVVVDQGSGFTKAGFAGENQPRIVLKSSSLVPSWDRPVLPGAPGCELAGGVARAHPIKHGVVADWEALEGLWERLLVGGLRVCPEQWPVLVSDSPLAPPAGRERVAELLFETLAVPACHMASTALLALCSTGAFSGLAVEAGAGVCHATPIYAGHSWHQATFR Same 683142 chr20:33667087-33667497+ 330 330 236 0 404 33667087 33667497 Best 566 566 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:33667087-33667497&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.749391727494 0.905834053587 15.0227737226 0.979 5.90085182482 9.12192189781 1.01809865885 1.01673795329 589 Best 589 589 30.9995051095 0.8386 3.75817591241 27.2413291971 1.00611532821 1.00282612168 1011 Best 1011 1011 0.0 0.297949954289 chr5:57481577-57482707- ENST00000330271.4,ENST00000246190.10,ENST00000485399.5 Extension5p,AntiCDSintron,AntiNCintron under investigation ACTL10 retrogene potential non-ATG start 567 469762 chr1:1922577-1922723- NoOverlap chr1 1922577 1922723 - 9.4009877571 49 0.525557771747 3.58926736944 5.81172038767 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;1922576;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A1922577-1922723-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A1922577-1922723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.94024284706 0.987573914418 1.02890273536 1854016 1854162 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;1854015;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A1922577-1922723-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A1854016-1854162&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLVASLQEPHTPQTVEFSIDSVASLQHKGFSIEPSRGSVERGQTKTISISWVPPADFDVGAFGLQAR Same 471644 chr1:1922577-1922723- 631 631 -64 0 405 1922577 1922723 Best 567 567 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:1922577-1922723&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.585034013605 0.636363636364 19.1663265306 0.8488 7.64728571429 11.5190408163 1.05618078807 1.0396607434 191 Best 191 191 31.1533734694 0.7431 7.4351244898 23.7182489796 0.987299316013 1.04204290047 1314 Best 1314 1314 0.0 0.0652281024194 chr16:49635660-49638874- ENST00000412120.2,ENST00000493964.5 NC,CDSintron coding exon(s) CFAP74 cassette exon 568 553205 chr3:120367884-120367967+ NoOverlap chr3 120367884 120367967 + 9.90604643949 28 0.899658306903 1.00766792681 8.89837851269 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;120367883;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120367884-120367967%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A120367884-120367967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00505908144 0.987272339774 1.05495311215 120086731 120086814 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;120086730;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120367884-120367967%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A120086731-120086814&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YLTPIVTWLDRTERDLSNHSIVEILEEQMNGFYR Same 554154 chr3:120367884-120367967+ 517 517 51 0 11 120366477 120368084 11 11;568;909;1181;1188;1356;8610 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:120366477-120368084&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.3 9.33559285714 0.9351 -1.67315 11.0087428571 0.867525051559 1.06177735933 1399 1029 1029;1399;2108;2270;2767;2983;4768 16.1516178571 0.4809 -1.09045357143 17.2420714286 0.92550226857 1.00973994651 1974 683 683;1974;2462;2559;2585;3123;3204 0.0 0.0 ENST00000494869.1 NC pseudogene unitary pseudogene ENSG00000240661 569 537067 chr2:230138601-230138765+ NoOverlap chr2 230138601 230138765 + 9.91657997587 55 0.791397240891 -1.98663273508 11.9032127109 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;230138600;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230138601-230138765%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A230138601-230138765&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02573811221 0.987087897994 0.924350962829 231003317 231003481 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;231003316;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230138601-230138765%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A231003317-231003481&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NININNTQNLIFIGLGKVCGVFFFALNLVGFGIFAFSQCFNPLIYGLWNKELQSRLHHWMCCQLWCGHTVNSR Same 538437 chr2:230138601-230138765+ 508 508 61 0 406 230138601 230138765 Best 569 569 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:230138601-230138765&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.363636363636 0.0 9.90913636364 0.8741 -6.94411090909 16.8532472727 1.06248881904 0.91379523414 125 Best 125 125 9.90913636364 0.2732 -6.94411090909 16.8532472727 0.794688262392 1.04928770066 2499 Best 2499 2499 0.0 0.0 ENST00000445199.3 NCintron pseudogene Component of Sp100-rs (Csprs) pseudogene (ENSG00000283451) 570 665031 chr19:14562387-14562524+ Extension chr19 14562387 14562524 + 6.65836743427 46 0.647894089119 -0.88684353362 7.54521096789 chr19:14562387-14562575+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;14562386;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A14562387-14562524%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A14562387-14562524&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.808994268636 0.986878085735 1.05474339107 14673199 14673336 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;14673198;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A14562387-14562524%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A14673199-14673336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAGLVAGGMDLNLSLLAREATPGLLPGLNGLPRPTPPKVAKKPKKAVLFFEVEILDAK Same 665646 chr19:14562387-14562524+ 620 620 -50 0 407 14562387 14563734 Best 570 570;70935 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:14562387-14563734&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.615942028986 0.233108108108 7.69355217391 0.921 -4.40449347826 12.0980456522 0.992536257235 1.05243137657 808 Best 808 808;51120 8.31745 0.7182 -10.9425021739 19.2599521739 0.904804725267 1.0759966242 2081 Best 2081 2081;36744 0.0 0.0 ENST00000215567.9,ENST00000598715.5,ENST00000594545.5,ENST00000593637.5 ExtensionMid,CDSintron,UTR5intron,NCintron coding exon(s) TECR intronic CDS 571 482743 chr10:126670241-126670417- NoOverlap chr10 126670241 126670417 - 8.10667286283 59 0.871237131666 -3.2464506647 11.3531235275 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;126670240;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A126670241-126670417-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A126670241-126670417&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01744052839 0.986709220144 0.924147734398 128358810 128358986 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;128358809;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A126670241-126670417-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A128358810-128358986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YTETAVHRTFQIKTFSTELKNHVMVMDFVKSNWFPSQRRAKVCIIHMCQGLKTAEQTASRYEVWLSLGG Same 484671 chr10:126670241-126670417- 491 491 80 0 408 126670241 126670417 Best 571 571 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:126670241-126670417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.446327683616 0.462745098039 15.284279661 0.9401 -3.00088644068 18.2851661017 0.97161536945 0.939332240759 955 Best 955 955 11.7238016949 0.4528 -9.64661355932 21.3704152542 1.02856196165 1.06391877296 640 Best 640 640 0.0 0.0 ENST00000488181.1 UTR5 coding exon(s) C10orf90 two 5' exons 572 530381 chr19:17391754-17391840- NoOverlap chr19 17391754 17391840 - 8.71226544627 29 0.759594110018 -1.59192068001 10.3041861263 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;17391753;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A17391754-17391840-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A17391754-17391840&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.925596878144 0.986568952225 1.02781849351 17502563 17502649 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;17502562;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A17391754-17391840-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A17502563-17502649&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQTQLTTLKIEMDEAKAQGTQMGAENGALTGALGCK Same 531844 chr19:17391754-17391840- 562 562 10 0 95 17390521 17394161 112 112;295;427;572;1325 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:17390521-17394161&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.597701149425 0.659090909091 14.3686862069 0.8912 -0.757965517241 15.1266517241 0.992953689362 1.02175317877 802 208 208;465;468;696;802 14.3686862069 0.2786 -0.757965517241 15.1266517241 0.681800957249 0.976898056477 2874 577 577;1818;2051;2874;2932 0.0 0.0 ENST00000597169.1 NC protein-coding gene protein-coding gene ENSG00000269720 573 571415 chr6:41108763-41108855+ NoOverlap chr6 41108763 41108855 + 4.87172262323 31 0.818493934539 -5.80648068687 10.6782033101 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;41108762;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A41108763-41108855%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A41108763-41108855&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.577750108234 0.986253630347 1.00426055215 41076502 41076594 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;41076501;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A41108763-41108855%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A41076502-41076594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TVSFL*LRDMWIIDPFDFDEHFDKCLNYLPHYRTSAGK Same 572443 chr6:41108763-41108855+ 513 513 60 2 409 41108763 41109041 Best 573 573;915 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:41108763-41109041&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.365591397849 0.645833333333 5.02470645161 0.749 -4.22474193548 9.2494483871 0.532904254754 1.05840904129 2915 2560 2560;2915 6.38445483871 0.3429 -5.69340967742 12.0778645161 0.485901174189 0.92880017109 3583 3399 3399;3583 0.0 0.17151095352 chr1:167896595-167896691- ENST00000457653.7 NCintron pseudogene extension ADCY10P1 pseudogene improved over its internal section (ENSG00000161912) 574 528022 chr19:32826443-32826604+ NoOverlap chr19 32826443 32826604 + 14.286477685 54 0.898176546883 -0.155594484122 14.4420721691 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;32826442;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A32826443-32826604%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A32826443-32826604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.953485413745 0.985799897863 0.957088720769 33317349 33317510 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;33317348;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A32826443-32826604%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A33317349-33317510&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADFISFYKPSAWVGDKFYLADLELRGNIRKDDCQCVIRNDEPVITLAKERREAWCHLLRQRVSWDALSGWSLPCVCHIHALTVSCSLEQNPNVAFDFDHWEDCEEDSHFPK Same 529469 chr19:32826443-32826604+ 550 550 24 0 214 32826242 32826736 264 264;574;1303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:32826242-32826736&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.493827160494 0.222527472527 24.9324648148 1.0 -0.841333333333 25.7737981481 1.02279922876 1.01730165599 551 251 251;551;665 26.7000222222 0.6636 -10.4308611111 37.1308833333 0.954575147047 0.915829668775 1770 149 149;1517;1770 0.0 0.0 ENST00000564769.2 NC coding exon(s) TDRD12 alternative final coding exons 575 577935 chr7:37796595-37796783+ NoOverlap chr7 37796595 37796783 + 4.60919204756 63 0.89662448637 -7.42278580412 12.0319778517 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;37796594;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796595-37796783%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A37796595-37796783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.750036853945 0.985167808047 0.905524161355 37836197 37836385 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;37836196;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796595-37796783%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A37836197-37836385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MTMVVILFLIQTAVIIQLIKAL*PDMWTHQEYRPQIKSFFFLLVIVVCFVPHHAFWVHFIQNNSER Same 578974 chr7:37796595-37796783+ 488 488 87 22 34 37796070 37796888 35 35;91;149;575;1403;9158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:37796070-37796888&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.391534391534 0.0 7.18102698413 0.9713 -12.6184714286 19.7994984127 1.03122838111 0.880333522589 466 34 34;142;466;1005;2248;12157 19.5841809524 0.6387 -16.6485333333 36.2327142857 0.940367656843 0.875827172054 1880 146 146;436;833;961;1880;4101 0.0 0.296787463558 chr7:37740394-37741311+ ENST00000476620.1,ENST00000461610.5 UTR5intron,NCintron pseudogene unitary pseudogene ENSG00000283444 576 563728 chr5:14441234-14441371+ NoOverlap chr5 14441234 14441371 + 6.72573478649 46 0.622634768677 -0.874947768839 7.60068255533 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;14441233;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A14441234-14441371%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A14441234-14441371&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.784243863478 0.984898537532 1.05402176421 14441343 14441480 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;14441342;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A14441234-14441371%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A14441343-14441480&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFCTFSLQSAPVTMPNGLKPVDTLDSLSSVSSAYCSGGQPGTCKYWILDLGTQALCR Same 564716 chr5:14441234-14441371+ 636 636 -60 0 410 14441234 14441371 Best 576 576 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:14441234-14441371&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.608695652174 0.631578947368 12.3260673913 0.9374 -4.26627173913 16.5923391304 1.06202348837 0.937454391433 131 Best 131 131 16.8722152174 0.5782 -5.05815434783 21.9303695652 1.08989473599 1.0513498775 79 Best 79 79 0.0 0.0 ENST00000515710.1,ENST00000344204.8,ENST00000512070.6 NC,CDSintron,NCintron coding exon(s) TRIO first coding exon 577 500532 chr13:113407341-113407817- NoOverlap chr13 113407341 113407817 - 9.19250125904 159 0.721632638568 -1.65392396285 10.8464252219 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;113407340;477;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113407341-113407817-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A113407341-113407817&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.995015402001 0.98444246454 0.979694802375 114061656 114062132 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;114061655;477;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113407341-113407817-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A114061656-114062132&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPAPKPCLSEKPRWGHPAGKSTVKNILKIFLAAEEKEAKEKEAREKPPVERPKAARGLLPKIMGKSSVLSKLREKFEQNSCLCSEASALRLHTQERKKRNLQRKRMHRPEVRVLHTATMASTCVKMPPARFLACTAEPLPALSIATVVCGPRSWLSHCTKISHSEARRPPR None NA NA 0 100 113403390 113410417 120 120;186;577;628;905;2155;43193 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:113403390-113410417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.651991614256 0.651531456954 18.1634113208 0.7787 1.84578930818 16.3176220126 0.961385143263 0.995397139769 1027 325 325;568;804;826;1027;2642;38380 23.8944962264 0.5904 -0.694681132075 24.5891773585 1.0378434405 1.02678740703 511 110 110;511;615;1448;1864;2789;42035 0.0 0.0 coding exon(s) ADPRHL1 alternative final coding exon 578 689163 chr22:20602774-20602866- Extension chr22 20602774 20602866 - 11.4603613279 31 0.680089683671 3.69054829113 7.76981303673 chr22:20602618-20602866- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;20602773;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20602774-20602866-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A20602774-20602866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.995882327636 0.984353949013 1.04910473319 20957061 20957153 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;20957060;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20602774-20602866-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A20957061-20957153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFWVLLPGVQSQGGLWGWGAAVLRPVVPPPHAPVPLPALQFADQMAALCS*DDFLASFCCYHLTEPTLASGHR Same 689780 chr22:20602774-20602866- 577 577 1 9 411 20602774 20602866 Best 578 578 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:20602774-20602866&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.612903225806 0.34875 20.6040096774 0.9201 6.60763548387 13.9963741935 1.02044702511 1.04659770918 569 Best 569 569 41.1377741935 0.7415 9.98847419355 31.1493 0.993271322817 1.04400369055 1221 Best 1221 1221 1.46572918838 chr2:130152555-130152884- 1.4157858632 chr2:130152555-130152884- ENST00000416717.5 NCintron pseudogene extension SMPD4P1 pseudogene extended (ENSG00000223553) 579 591989 chr9:61113782-61113907- NoOverlap chr9 61113782 61113907 - 5.96815951027 42 0.598242669312 -3.08072859049 9.04888810075 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61113781;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61113782-61113907-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61113782-61113907&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.605798348859 0.984303988961 1.03095789533 43844316 43844191 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;43844315;-124;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61113782-61113907-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A43844316-43844191&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDR Same 592939 chr9:61113782-61113907- 671 671 -92 0 412 61096906 61113907 Best 579 579;1316;6725;6965;20633;21300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61096906-61113907&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.579365079365 0.288109756098 5.82353809524 0.4694 -1.30321190476 7.12675 0.379411063379 1.01233232735 4265 3401 3401;4265;9880;14496;15960;37173 27.1417428571 0.8332 -6.51303571429 33.6547785714 1.00793465022 0.964540901259 978 634 634;935;978;1145;1930;2566 0.894185120488 chr9:39149806-39149977- 0.847124577683 chr9:41970074-41970245- redundant PhyloCSF signals are accounted for elsewhere on the list 580 579650 chr7:142308759-142308797+ NoOverlap chr7 142308759 142308797 + 4.49230773632 13 0.844800488289 -13.2243998555 17.7167075918 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142308758;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142308759-142308797%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142308759-142308797&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0516501153165 0.984109603609 0.938235415217 142008582 142008620 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142008581;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142308759-142308797%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142008582-142008620&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILLLSFAGPLDTAVSQTPKYLVTQMGNDK None NA NA 0 235 142308759 142313661 301 301;580;755;2301;6419;13330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142308759-142313661&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.487179487179 0.0 7.9838 0.8889 -16.5664615385 24.5502615385 0.472315437264 0.956029188177 3331 920 920;2287;2398;2499;3331;6365 10.5870846154 0.5022 -21.5671076923 32.1541923077 0.616256811575 1.02036422645 3117 1287 1287;2253;2669;3117;3138;4592 0.0 0.0 ENST00000390387.3 NC immunoglobulin segment overlaps an immunoglobulin region 581 570126 chr5:177632324-177632509- NoOverlap chr5 177632324 177632509 - 3.06254196624 62 0.623434412048 -6.25093387172 9.31347583796 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;177632323;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177632324-177632509-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A177632324-177632509&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.259227620884 0.984056985147 1.0294251133 177059325 177059510 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;177059324;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177632324-177632509-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A177059325-177059510&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSQPTARRLINSDPVDLDLVEENTFVGPPPATSISGGSVYPTEPNCSSATFTGNLSFLASLQLSSDVSSLSPTSNNSSSSSSNQK Same 571144 chr5:177632324-177632509- 649 649 -68 0 413 177631373 177632741 Best 581 581;682;928;2345;9048;9086 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:177631373-177632741&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.478494623656 0.190769230769 -0.27925483871 0.6433 -9.0524983871 8.77324354839 0.369260010008 1.06611419837 4414 2235 2235;3960;4414;7404;13259;17105 -0.458838709677 0.2978 -10.3886467742 9.92980806452 0.268712376831 0.912783927217 4964 2652 2652;4964;5610;7150;10642;13371 0.997331050493 chr5:176289654-176290955+ 0.99717347968 chr5:176289654-176290955+ ENST00000515045.1,ENST00000500444.2 NC,NCintron pseudogene extension SUMO interacting motifs containing 1 (SIMC1) pseudogene significantly rebuilt (ENSG00000246596) 582 484446 chr11:57037633-57037788+ NoOverlap chr11 57037633 57037788 + 11.8255 52 0.920067374451 -2.81969619485 14.6451961948 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57037632;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57037633-57037788%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57037633-57037788&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.989841291625 0.983598536581 0.962277377369 56805108 56805263 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;56805107;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57037633-57037788%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A56805108-56805263&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWHILSIAFLAIYVVTPVGNIGMILLIKIDASLHIPM*IFLQHLAFVDLCYTSAITPKMLKNFVETK Same 486391 chr11:57037633-57037788+ 585 585 -3 25 338 57037567 57038422 463 463;582;884;1044;1236;1826;3363;6311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57037567-57038422&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.371794871795 0.0 14.4118230769 0.9735 -4.05519230769 18.4670153846 1.00516562383 0.92702485881 688 346 346;643;688;1159;1835;1855;2138;3085 40.2463903846 0.9564 -17.7891442308 58.0355346154 0.991779952623 1.06864077846 1246 792 792;938;1237;1246;1582;1841;2263;2401 0.116382622457 chr11:56988914-56989843+ 0.297850040348 chr11:56988914-56989843+ pseudogene OR5AK4P olfactory receptor family 5 subfamily AK member 4 pseudogene (ENSG00000283307) 583 542105 chr2:224716279-224716368- NoOverlap chr2 224716279 224716368 - 4.94252345612 30 0.841528953994 -5.81007010738 10.7525935635 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;224716278;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A224716279-224716368-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A224716279-224716368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.58675291578 0.983463753932 1.00440747807 225580996 225581085 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;225580995;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A224716279-224716368-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A225580996-225581085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EETMEADIQLMRLIQEMRAEIHKLEKENQALR Same 543482 chr2:224716279-224716368- 531 531 52 0 414 224716279 224716368 Best 583 583 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:224716279-224716368&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.488888888889 0.372670807453 6.23466333333 0.9661 -16.4737566667 22.70842 0.984987268172 0.915070574511 871 Best 871 871 16.1775766667 0.4884 -16.90182 33.0793966667 1.01997149306 0.942967834568 787 Best 787 787 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283428 584 468767 chr1:206518412-206518492+ NoOverlap chr1 206518412 206518492 + 14.2399481734 27 0.943685166818 -1.21717407968 15.457122253 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;206518411;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A206518412-206518492%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A206518412-206518492&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.996577832911 0.983355553652 0.99721131902 206691745 206691825 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;206691744;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A206518412-206518492%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A206691745-206691825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATAACFGTVTAQLQRLFCRLPKSRSVSK Same 470644 chr1:206518412-206518492+ 515 515 69 0 415 206518412 206518492 Best 584 584 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:206518412-206518492&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.654320987654 0.593841642229 16.8891333333 0.9915 -4.90151851852 21.7906518519 1.05475859791 0.959164512392 203 Best 203 203 23.7850518519 0.4222 -4.76371481481 28.5487666667 0.985923549759 1.04139246687 1330 Best 1330 1330 0.0 0.0 ENST00000579436.6 CDSintron coding exon(s) RASSF5 alternative 5' eon 585 552905 chr3:88466612-88466896+ NoOverlap chr3 88466612 88466896 + 4.26337576081 95 0.750032485655 -4.8028684551 9.06624421591 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88466611;285;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88466612-88466896%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88466612-88466896&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.753948644515 0.983329460042 1.03663644343 88515762 88516046 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88515761;285;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88466612-88466896%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88515762-88516046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSQPCIVKGGTVPDDVVNKIVNSISNTRIQRDLCRQILFRRMRGRPNPHPGPRLSSNYVVCLACASCLKSPCNHLRGKKNPHCATLSVIPTPEANSEGK Same 553847 chr3:88466612-88466896+ 472 472 113 0 416 88466612 88467418 Best 585 585;2207;4312;26019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88466612-88467418&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.424561403509 0.077868852459 8.84004 0.9956 -6.96749473684 15.8075347368 0.978708372789 0.971998698965 907 Best 907 907;1471;2699;6077 10.5169305263 0.3544 -6.81673157895 17.3336621053 0.773465067237 1.06041404492 2570 Best 2570 2570;3552;4407;12555 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283434 586 485939 chr11:111458117-111458194+ NoOverlap chr11 111458117 111458194 + 5.45535388761 26 0.855671367619 -6.22828085033 11.6836347379 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111458116;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111458117-111458194%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111458117-111458194&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.589684146857 0.983261147012 0.984886900088 111328842 111328919 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111328841;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111458117-111458194%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111328842-111328919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DMRQPLALTLHHVLQQAQRLERQLVTADDIEASGGR Same 487897 chr11:111458117-111458194+ 536 536 50 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.602564102564 0.0 7.07980769231 0.9742 -6.25 13.3298076923 0.839192705082 1.05810644027 1514 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 8.76681153846 0.6916 -17.1396115385 25.9064230769 0.887124874204 1.06776342869 2165 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000527555.1 NC pseudogene unitary pseudogene ENSG00000255093 587 573705 chr6:9819156-9819287- NoOverlap chr6 9819156 9819287 - 4.72525447133 44 0.921666770705 -4.41180451587 9.1370589872 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;9819155;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9819156-9819287-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A9819156-9819287&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.724504055047 0.982065989649 1.03273033367 9819389 9819520 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;9819388;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9819156-9819287-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A9819389-9819520&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVFPLCNNNFDTVEGKFKCPLL*GHYDQKLSNFRKIEDLICLDLDHWLCNLYFQVCNMIF Same 574734 chr6:9819156-9819287- 611 611 -24 11 417 9819156 9819329 Best 587 587;68281 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:9819156-9819329&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.409090909091 0.0 4.43800681818 0.9612 -7.66062045455 12.0986272727 0.887896367902 1.08015257772 1333 Best 1333 1333;3458 19.7749204545 0.7403 -7.76568636364 27.5406068182 1.04161825513 1.00960041386 457 Best 457 457;2512 0.0 0.0 ENST00000469426.5,ENST00000460363.6,ENST00000460066.5 NC,CDSintron,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 588 579340 chr7:128866410-128866577+ NoOverlap chr7 128866410 128866577 + 11.4309018542 56 0.869331000883 2.13506600527 9.2958358489 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;128866409;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A128866410-128866577%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A128866410-128866577&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.97272524508 0.982001475312 0.999834862094 128506464 128506631 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;128506463;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A128866410-128866577%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A128506464-128506631&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LCLGSHSPSEALCLLCSPLSCGHPGATPSLATMSRQLNIDALRQNFWKEEYLREKMLRCEWYRKYGSMVKAKQKAKAAARLPLKLPTLHPK Same 580384 chr7:128866410-128866577+ 528 528 60 0 172 128866410 128869879 206 206;588;599;60089;63616 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:128866410-128869879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.553571428571 0.627450980392 16.3906375 0.993 1.42409821429 14.9665392857 0.952759789193 0.973571678574 1076 402 402;800;1076;26130;53327 20.169775 0.5383 -2.135625 22.3054 1.07518987204 1.04367704089 145 19 19;145;1707;46080;51704 0.0 0.0 ENST00000492679.5 AntiNCintron protein-coding gene protein-coding gene ENSG00000272899 589 579717 chr7:142801070-142801225+ NoOverlap chr7 142801070 142801225 + 13.7057537335 52 0.923589274081 3.23291538541 10.4728383481 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142801069;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142801070-142801225%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142801070-142801225&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.968631793083 0.981844062267 0.980056176672 142498754 142498909 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142498753;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142801070-142801225%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142498754-142498909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLK None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.615384615385 0.271304347826 19.5223 0.9788 2.61637692308 16.9059230769 0.956989160375 0.95639087588 1049 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 27.5046653846 0.6739 0.735955769231 26.7687096154 0.979659512971 1.02710552218 1432 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.0 ENST00000466254.1 NC immunoglobulin segment overlaps an immunoglobulin region 590 485273 chr11:67540459-67540581+ NoOverlap chr11 67540459 67540581 + 5.54692683642 41 0.641504539559 -3.60292916836 9.14985600477 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;67540458;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67540459-67540581%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A67540459-67540581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.598364348923 0.981650536167 1.03164222022 67307930 67308052 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;67307929;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67540459-67540581%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A67307930-67308052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TWTTCSHNPLPGTLVPGYLGALLLLSAYVARLSAQPKLEASLASPEYGNDPIFGGYK Same 487229 chr11:67540459-67540581+ 651 651 -61 0 418 67538911 67540581 Best 590 590;7079;8327;9330;15109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:67538911-67540581&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.650406504065 0.485845951284 10.7490463415 0.9788 -6.6210902439 17.3701365854 1.07970973249 0.926681906731 51 Best 51 51;1631;1897;1917;5012 15.2273487805 0.4068 -6.75580731707 21.9831560976 1.08206383132 1.05727780438 118 Best 118 118;3030;3177;3475;4027 0.252036136603 chr11:67586389-67586577+ 0.434359815405 chr11:67586389-67586577+ pseudogene glutathione S-transferase pi 1 (GSTP1) unprocessed pseudogene (ENSG00000283257) 591 613384 chr10:96004150-96004227+ Extension chr10 96004150 96004227 + 5.96548841091 26 0.852201113909 -5.5709113983 11.5363998092 chr10:96004150-96004230+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;96004149;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A96004150-96004227%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A96004150-96004227&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.665538406496 0.981539107949 0.991027938315 97763907 97763984 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;97763906;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A96004150-96004227%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A97763907-97763984&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFEYIFLICSSPGHDYSFSSLSKIKDNIYINIFDEMMTEK Same 614098 chr10:96004150-96004227+ 541 541 50 0 419 96004150 96004227 Best 591 591 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:96004150-96004227&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.282051282051 0.0 10.4253230769 0.9965 -4.42380384615 14.8491269231 0.982380576742 1.02711400455 885 Best 885 885 14.2669923077 0.5269 -4.96719615385 19.2341884615 0.91109867042 1.03997383883 2053 Best 2053 2053 0.0 0.0 ENST00000344386.3,ENST00000475252.2,ENST00000416301.5 Extension5p,NC,AntiNCintron coding exon(s) CC2D2B greatly extended to incorporate lncRNAs now seen to part of the same locus 592 590945 chr9:134026745-134027002+ NoOverlap chr9 134026745 134027002 + 17.299748849 86 0.736766258399 4.59182902727 12.7079198218 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;134026744;258;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A134026745-134027002%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A134026745-134027002&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00577072103 0.981495949837 1.00371463977 136891867 136892124 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;136891866;258;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A134026745-134027002%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A136891867-136892124&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CAWAVSEQQGSQESSGTGEGMSGRVPLAEKALSEGYARLRYRDTSLLIWQQQQQKLESVPPGTYLSRSRSMWYSQYGNEAILVRDKNKLEVSRDTGQSKFCTIM* Same 591898 chr9:134026745-134027002+ 520 520 72 0 420 134025449 134027002 Best 592 592;35037 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:134025449-134027002&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.562015503876 0.444316877153 31.0515267442 0.9067 10.572777907 20.4787488372 0.999242305442 0.97334272688 746 Best 746 746;14886 61.8472546512 0.8764 20.2769209302 41.5703337209 1.06556541289 0.964269803859 191 Best 191 191;11626 0.0 0.0 ENST00000430633.5,ENST00000550853.1 NC,NCintron protein-coding gene protein-coding gene ENSG00000235106 593 520477 chr17:10803748-10803903- NoOverlap chr17 10803748 10803903 - 11.5979153746 52 0.93392872863 -1.12639231521 12.7243076898 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;10803747;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A10803748-10803903-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A10803748-10803903&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.995141290197 0.980805167013 0.929076041558 10707065 10707220 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;10707064;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A10803748-10803903-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A10707065-10707220&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CALFLILALLLDAVGLVLLLLGILAPLSSWDFFIYTGALILALSLLLWIIWYSLNIEVSPEK Same 521887 chr17:10803748-10803903- 592 592 1 0 421 10803748 10803966 Best 593 593;1654 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:10803748-10803966&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.589743589744 0.3 17.02825 0.9792 -2.26250576923 19.2907557692 0.982254791995 0.941366678908 887 Best 887 887;1570 41.8069596154 0.9052 -6.93457884615 48.7415384615 1.00434446376 0.963184885643 1046 Best 1046 1046;1941 0.0 0.23862699474 chr19:55383729-55384259- ENST00000581851.1,ENST00000580899.1 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000263429 594 509716 chr15:82711282-82711380- NoOverlap chr15 82711282 82711380 - 6.8550273627 33 0.761457560267 -2.17642101916 9.03144838187 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;82711281;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A82711282-82711380-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A82711282-82711380&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.843488403635 0.980786709979 1.04592801282 83380034 83380132 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;83380033;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A82711282-82711380-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A83380034-83380132&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GIVSKQGQRPLLRSCWRVLRRVSEATDADPPSYHSMR Same 511447 chr15:82711282-82711380- 565 565 29 0 422 82699633 82711838 Best 594 594;666;2562;3438;6176 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:82699633-82711838&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.676767676768 1.05882352941 13.0147969697 0.9172 -5.33754242424 18.3523393939 1.0515288483 0.945599908068 242 Best 242 242;908;1397;1646;2079 16.8648272727 0.3821 -4.84366060606 21.7084878788 1.01449149119 1.05719840338 862 Best 862 862;988;2701;2921;3420 0.0 0.088773747681 chr19:45778493-45778641- ENST00000440089.1,ENST00000440479.1 NC,NCintron pseudogene unitary pseudogene ENSG00000228141 595 479231 chr10:122749993-122750163+ NoOverlap chr10 122749993 122750163 + 10.9384878163 57 0.691224322345 -2.82724732683 13.7657351431 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122749992;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122749993-122750163%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122749993-122750163&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03919006642 0.980696815994 0.945683762144 124509509 124509679 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124509508;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122749993-122750163%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124509509-124509679&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLRDDLWNLAKATVVCRQLQCGRAVAAPTGAHFGAGSGKILLDDVQCVGSESHLGQCVHGGR Same 481136 chr10:122749993-122750163+ 573 573 22 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.643274853801 0.522758152174 18.0716263158 0.8494 -2.67697017544 20.7485964912 1.01603640851 0.972021241908 607 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 60.8776192982 0.9467 -5.29475087719 66.1723701754 0.971594525643 0.997223603015 1555 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.067864675474 chr10:122630961-122631281+ 0.179512760727 chr10:122576399-122576722+ pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 596 515339 chr16:87358409-87358492- NoOverlap chr16 87358409 87358492 - 15.3087822244 28 0.763159271491 6.19049999544 9.11828222897 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;87358408;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A87358409-87358492-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A87358409-87358492&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00062534156 0.980536956116 1.03902385216 87392015 87392098 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;87392014;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A87358409-87358492-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A87392015-87392098&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PFPCCVCSGINPRVKSGRFVKILPDYEHMAYRDVYTCR Same 516991 chr16:87358409-87358492- 579 579 17 0 423 87358409 87358492 Best 596 596 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:87358409-87358492&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 1.33333333333 17.2178464286 0.9335 5.03270357143 12.1851428571 1.00522366076 1.05332626687 687 Best 687 687 33.3379214286 0.8705 10.5050142857 22.8329071429 1.04172773905 1.03971487391 452 Best 452 452 0.0 0.0 ENST00000311635.11,ENST00000563113.5,ENST00000561664.1 CDSintron,UTR5intron,NCintron coding exon(s) FBXO31 cassette exon 597 588827 chr9:35351926-35352132+ NoOverlap chr9 35351926 35352132 + 8.57996090167 69 0.873060196841 0.403484112543 8.17647678913 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35351925;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35351926-35352132%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35351926-35352132&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.9958847397 0.980439152704 1.02807616457 35351923 35352129 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35351922;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35351926-35352132%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35351923-35352129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EQREPLGDVVEYIIRELQGISRLQTEIAELQQHLSQVQGSVDEVSSCVDSVLSEIEGLQVSTCSLAKVCEGEK Same 589770 chr9:35351926-35352132+ 506 506 91 0 424 35341754 35353800 Best 597 597;674;681;729;1148;1380;3195 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35341754-35353800&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.51690821256 0.224025974026 14.5639362319 0.9995 3.13110724638 11.4328289855 0.972452024296 1.03217238225 951 613 613;676;680;821;951;1589;9444 39.9823594203 0.8909 8.9593884058 31.0229710145 0.970299035582 1.01052562591 1576 210 210;564;1088;1576;2310;2740;16707 0.0 0.105346600561 chr15:54012904-54015886+ ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron not annotated potentially spurious 598 470662 chr1:21951297-21951365- NoOverlap chr1 21951297 21951365 - 8.43669558284 23 0.93119043591 -4.21937387923 12.6560694621 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;21951296;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A21951297-21951365-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A21951297-21951365&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.823150859576 0.980421138352 0.982987693165 22277790 22277858 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;22277789;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A21951297-21951365-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A22277790-22277858&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPLGRICMGRPCYSK*VETSHLVNPK Same 472544 chr1:21951297-21951365- 596 596 2 7 224 21950738 21951365 280 280;598;1175;2010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:21950738-21951365&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.565217391304 0.181578947368 8.65880869565 0.962 -11.7439608696 20.4027695652 0.892886077944 0.935114165592 1314 293 293;962;1314;1435 6.76836086957 0.3379 -14.7754521739 21.5438130435 0.605872942869 1.08031357536 3146 1720 1720;2814;3146;3452 0.0 0.0 pseudogene unitary pseudogene ENSG00000283234 599 579341 chr7:128866596-128866829+ NoOverlap chr7 128866596 128866829 + 8.03217573158 78 0.914312375654 3.69716917246 4.33500655912 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;128866595;234;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A128866596-128866829%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A128866596-128866829&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.997473527051 0.97998473546 0.981155532705 128506650 128506883 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;128506649;234;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A128866596-128866829%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A128506650-128506883&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APLSPPPAPKSAPSKVPSPVPEAPFQSEMYPVPPITRALLYEGISHDFQGRYRYLNTRKLDMPETRYLFPITTSFTYGWQLGEPNLLEITSK Same 580385 chr7:128866596-128866829+ 547 547 52 0 172 128866410 128869879 206 206;588;599;60089;63616 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:128866410-128869879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606837606838 0.616194865043 8.85282564103 0.9928 2.02006025641 6.83276538462 0.993073061464 1.01328047173 800 402 402;800;1076;26130;53327 16.068774359 0.5671 2.27795 13.790824359 0.959507001139 0.98015289937 1707 19 19;145;1707;46080;51704 0.0 0.0 ENST00000609480.2,ENST00000492679.5 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000272899 600 629036 chr12:132104171-132104377+ Extension chr12 132104171 132104377 + 8.48659854134 69 0.365053080387 1.64983912093 6.83675942041 chr12:132104012-132105310+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132104170;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132104171-132104377%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132104171-132104377&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.792926340097 0.979962245888 1.0490098274 132588716 132588922 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132588715;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132104171-132104377%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132588716-132588922&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HVQWPGACPGAGEEQPACSQPSLPLTLPSPSHQLQQLMVRGGPAGGQNMNVDLQGVGPGLQGSPQVTLAPLPLPSPTSPGFQFSAQPRRFEHGSPSYIQVTSPLSQQVQTQSPTQPSPGPGQALQNVR Same 629703 chr12:132104171-132104377+ 756 756 -156 0 425 132104171 132144439 Best 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.657004830918 0.360078277886 24.5450695652 0.8336 6.57585797101 17.9692115942 0.979625722009 0.958765073374 902 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 59.9791550725 0.8322 19.2088463768 40.7703086957 1.08471836537 0.958024407755 107 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.919552053533 chr12:131960620-131961954+ 0.86933150901 chr12:131960620-131961954+ ENST00000389560.6,ENST00000446190.5,ENST00000488030.5 ExtensionMid,NC,NCintron pseudogene extension EP400NL pseudogene extended (ENSG00000185684) 601 574270 chr6:30057580-30057663- NoOverlap chr6 30057580 30057663 - 8.76840357482 28 0.946752553161 -0.614524807249 9.38292838207 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;30057579;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30057580-30057663-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A30057580-30057663&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.959376763837 0.97938558139 1.04954798104 30025357 30025440 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;30025356;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30057580-30057663-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A30025357-30025440&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YQEECEILCREQAVSLDYWLAKAESYYNK Same 575299 chr6:30057580-30057663- 605 605 -4 0 80 30056989 30058171 93 93;601;1036;2276;5125 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:30056989-30058171&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.0 12.5351535714 0.9582 0.992453571429 11.5427 0.979409870674 1.05748779132 903 Best 903 903;1446;1727;2503;6815 13.3983928571 0.3427 -1.07977857143 14.4781714286 0.699026620608 0.961541189343 2810 Best 2810 2810;3423;3544;3993;9246 0.0 0.0 ENST00000421692.5,ENST00000376797.7 NC,NCintron pseudogene unitary pseudogene ENSG00000204623 602 475574 chr1:205440910-205441029- NoOverlap chr1 205440910 205441029 - 10.2250224913 40 0.78546692607 6.39250742346 3.83251506789 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;205440909;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205440910-205441029-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A205440910-205441029&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07608596927 0.979182359671 0.871064538541 205410038 205410157 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;205410037;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205440910-205441029-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A205410038-205410157&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GMPQFTFACFCGLHGFCKMKRKKEEVHRERETAV*SEPGPLHQAPSR Same 477460 chr1:205440910-205441029- 566 566 36 5 426 205429956 205457273 Best 602 602;5870;20670;25343;28258;42315;54500 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:205429956-205457273&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575 0.512820512821 11.2536175 0.9875 6.23858 5.0150375 0.953042822439 0.864450180173 1075 Best 1075 1075;10557;16883;23930;42062;54053;60191 25.3782375 0.7256 10.8468575 14.53138 1.05348086436 0.962084009126 283 Best 283 283;9691;10748;23486;28634;42041;49407 0.0 0.0 ENST00000629624.1,ENST00000367154.5,ENST00000625854.1 NC,UTR5intron,NCintron under investigation; now made coding Finds a 33aa single exon CDS within a 5' exon of LEMD1 in GENCODE [chr1:205441026-205440925], although this exon is part of lncRNA BLACAT1 in RefSeq. Transcriptomics data make it clear that the locus should indeed be considered an independent gene from LEMD1, with an indication of potential brain / neuronal specificity (e.g. SRR486241). The CDS was initially considered hard to appraise because of its small size, although the reading frame is conserved across vertebrates with only 3mer indels in the genomic alignments. Following the analytical work presented here, it was decided to convert this gene (i.e. BLACAT1) to protein-coding, and ENSG00000281406 appeared in GENCODEv31. 603 573703 chr6:9705205-9705381- NoOverlap chr6 9705205 9705381 - 5.87875932884 59 0.782193497329 -1.32219823336 7.20095756221 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;9705204;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9705205-9705381-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A9705205-9705381&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.881522884257 0.979120759837 1.0574288563 9705438 9705614 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;9705437;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9705205-9705381-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A9705438-9705614&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FHFSLHIVELCYPTSSLHIGEELPVVVMGPLMLNAILLLLVLIRWGCQLLFASCPDVLSKLIITMGLWTILDPLAVFILDTLLGVSQMK Same 574732 chr6:9705205-9705381- 534 534 69 0 427 9697636 9705441 Best 603 603;833;3220;7824 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:9697636-9705441&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.457627118644 0.108722358722 9.10201186441 0.9697 -3.36543389831 12.4674457627 1.02184950515 1.02467980026 557 Best 557 557;715;1581;2780 17.2597355932 0.9268 -3.60898474576 20.868720339 1.023109473 1.04903146185 738 489 489;548;738;1712 0.0 0.0 ENST00000492094.6 NC redundant PhyloCSF signals are accounted for elsewhere on the list 604 489708 chr11:118013793-118013879- NoOverlap chr11 118013793 118013879 - 9.19469320569 29 0.805712662094 0.504468965119 8.69022424057 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;118013792;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A118013793-118013879-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A118013793-118013879&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.980848114009 0.979024291142 1.05541600341 117884508 117884594 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;117884507;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A118013793-118013879-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A117884508-117884594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLKDLEMGPPFTISGHISSTDGGYMKFSNGLV Same 491694 chr11:118013793-118013879- 559 559 45 0 296 118013793 118015810 391 391;604;13115 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:118013793-118015810&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.51724137931 0.0 14.0516206897 0.9795 1.80223103448 12.2493896552 1.03260092448 1.05633163938 454 122 122;454;2606 17.306062069 0.3945 2.20817586207 15.0978862069 0.863262807985 0.966593702144 2260 770 770;2260;3505 0.0 0.0 protein-coding gene protein-coding gene ENSG00000255274 605 514639 chr16:67210566-67211021- NoOverlap chr16 67210566 67211021 - 5.8936237188 152 0.708028152895 -0.541892789513 6.43551650831 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;67210565;456;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A67210566-67211021-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A67210566-67211021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.9325880093 0.978800806046 1.08134978754 67244469 67244924 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;67244468;456;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A67210566-67211021-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A67244469-67244924&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TDVRYNIPVSSASLSAIKSLGLRGICCISLTNLDGSLASHQVLQSVAYHLGPHLQSLSLGGGSPTEASSVALILGCPALCVLDLSGCNSLFTSGTLLAQPEMAQSVQQALSGLRELNLAGLRDLADLSFNQLSSCAPSLERLSLAYCHLTFELGPA Same 516291 chr16:67210566-67211021- 344 344 261 0 345 67210140 67211021 474 474;605;1073 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:67210140-67211021&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.625 0.230839323681 8.70861447368 0.9961 -3.26484736842 11.9734618421 0.986794871137 1.07340441144 858 430 430;842;858 25.3077486842 0.7399 -3.53303815789 28.8407868421 0.996933841962 1.01956310389 1158 171 171;1158;1313 0.0 0.0 ENST00000409037.5,ENST00000462169.5,ENST00000393992.5 UTR5,NC,UTR5intron pseudogene LRRC29 (ENSG00000125122) changed to pseudogene from protein-coding after complete structure became apparent and disablements thus revealed 606 481633 chr10:100122574-100122651- NoOverlap chr10 100122574 100122651 - 8.36761533182 26 0.805787277497 -3.65256142846 12.0201767603 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100122573;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100122574-100122651-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100122574-100122651&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.876721215807 0.97864314641 0.987386078303 101882331 101882408 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101882330;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100122574-100122651-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101882331-101882408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSSMIQSTFLLIASLLGLFFSNGEKWKQT*RFSLMILSNFGMGR Same 483549 chr10:100122574-100122651- 569 569 37 12 90 100105748 100122651 105 105;606;781;1442;2015;3184;14859;17791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100105748-100122651&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.435897435897 0.278571428571 7.56159615385 0.7291 -3.09586538462 10.6574615385 0.610091282326 1.06085809692 2485 2120 2120;2485;2770;2888;8530;10411;15939;19257 30.2709807692 0.7084 0.1368 30.1341807692 1.05510578943 1.04455515495 267 209 209;267;1101;3020;3409;3819;4117;17036 0.0 0.316272242821 chr19:41004297-41004446+ pseudogene unitary pseudogene ENSG00000283232 607 583079 chr7:151207868-151208110- NoOverlap chr7 151207868 151208110 - 6.18478266113 81 0.778975140039 -0.745130889946 6.92991355108 ENST00000222388.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;151207867;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A151207868-151208110-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A151207868-151208110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.945819642217 0.9785700232 1.0571606006 150904954 150905196 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;150904953;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A151207868-151208110-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A150904954-150905196&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVLPSLQVHPDIGISAKAMSIMNSFVNDVFEQLACEAARLAQYSGRTTLTSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK*PR Same 584006 chr7:151207868-151208110- 527 527 80 1 53 151207868 151210318 60 60;607 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:151207868-151210318&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.61316872428 0.481795241528 10.0305024691 0.9228 -0.806349382716 10.8368518519 0.998092557009 1.05534151374 758 73 73;758 41.7431518519 0.9631 4.49411975309 37.2490320988 1.00307530119 1.0125511532 1063 680 680;1063 0.0 0.118898093958 chr21:43565239-43565619+ ENST00000222388.6 CDS protein-coding gene protein-coding gene ENSG00000285480 608 537042 chr2:227746074-227746196+ NoOverlap chr2 227746074 227746196 + 5.84810002584 41 0.780010681315 -2.13226327882 7.98036330466 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227746073;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227746074-227746196%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227746074-227746196&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.824044851292 0.978436761015 1.05676970145 228610790 228610912 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228610789;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227746074-227746196%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228610790-228610912&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCCGGCCSTPVICCCRRTCSSCGCGYGKGCCQQKGCCQQKCCCQK Same 538412 chr2:227746074-227746196+ 552 552 56 0 428 227745894 227746196 Best 608 608;8335 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227745894-227746196&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.634146341463 0.331313131313 9.59744146341 0.8773 0.0531780487805 9.54426341463 0.949676342752 1.0586907848 1091 Best 1091 1091;1267 6.59955365854 0.6377 -1.27707317073 7.87662682927 0.53157045462 0.815331426297 3417 3143 3143;3417 0.0 0.13369317565 chr12:55957186-55957671- protein-coding gene protein-coding gene ENSG00000284635 609 529307 chr19:56302000-56302101+ NoOverlap chr19 56302000 56302101 + 5.81247646121 34 0.645982613691 -4.9772940804 10.7897705416 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;56301999;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A56302000-56302101%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A56302000-56302101&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.559995592703 0.978400960237 0.988689633858 56813369 56813470 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;56813368;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A56302000-56302101%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A56813369-56813470&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPLPKRKNTWNFLKCAYMVMTYLFVSYNKGDWVR Same 530766 chr19:56302000-56302101+ 635 635 -26 0 429 56302000 56304825 Best 609 609;4219 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:56302000-56304825&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.490196078431 0.492753623188 11.1716235294 0.6614 -6.75725882353 17.9288823529 0.972707724528 0.939153467031 949 Best 949 949;5037 11.1716235294 0.2067 -6.75725882353 17.9288823529 0.664491785238 1.04786878997 2949 Best 2949 2949;7089 0.0 0.0 ENST00000587247.1,ENST00000587340.5,ENST00000585670.5 NC,AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000267710 610 503448 chr14:23102096-23102257- NoOverlap chr14 23102096 23102257 - 11.0712520197 54 0.910537202343 0.0779536912839 10.9932983284 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23102095;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23102096-23102257-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23102096-23102257&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.992917311029 0.978384283158 0.950596471581 23571305 23571466 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23571304;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23102096-23102257-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23571305-23571466&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QPAICHLLQEGLLSSHWEARLLQGSLMTATFDGAQRTRLDPITLAAFKDSGWYQVNHSAAEELLWGQGEE Same 505287 chr14:23102096-23102257- 564 564 46 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586419753086 0.434704830054 14.096337037 0.9727 -1.95024074074 16.0465777778 0.995293915024 0.947094661046 787 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 30.2101555556 0.7281 -0.609624074074 30.8197796296 0.938075073789 1.00044302787 1897 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 611 560448 chr4:157365651-157365704+ NoOverlap chr4 157365651 157365704 + 3.21918335888 18 0.962628112205 -10.8522835109 14.0714668698 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;157365650;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157365651-157365704%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A157365651-157365704&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.122162093654 0.978304422436 0.931772210479 158286803 158286856 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;158286802;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157365651-157365704%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A158286803-158286856&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YPCNGASIYCYINMSVCI Same 561432 chr4:157365651-157365704+ 741 741 -130 0 430 157360983 157365960 Best 611 611;15695;15785;16090;17171;20574;21787;68912;71132 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:157360983-157365960&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.314814814815 0.75 -1.67539444444 0.9936 -14.8514722222 13.1760777778 0.274768156603 1.07895794469 6226 3893 3893;6182;6226;10710;11582;13344;21003;56071;56585 -10.6575944444 0.6734 -24.1907444444 13.53315 0.0664857986067 0.858444099596 15714 3522 3522;3805;7560;13336;15714;28221;29180;32592;39824 0.0 0.0 ENST00000296526.11 UTR3 coding exon(s) GRIA2 alternative final exon 612 556809 chr3:128965505-128965690- NoOverlap chr3 128965505 128965690 - 10.4236321089 62 0.843529067206 1.98769040838 8.43594170049 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;128965504;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A128965505-128965690-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A128965505-128965690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.975288178361 0.978089924282 1.01922431669 128684348 128684533 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;128684347;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A128965505-128965690-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A128684348-128684533&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLMLGVFPPGWQTVVSRGSEKSANILDCLLTLKTEVPIMTEEQKQDLNPLTIKIKCASCLPSQPVPIQELEVR Same 557778 chr3:128965505-128965690- 533 533 79 0 431 128965505 128965690 Best 612 612 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:128965505-128965690&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.44623655914 0.432558139535 17.6344677419 0.9859 4.16206935484 13.4723983871 0.93221075063 0.999833413729 1179 Best 1179 1179 18.4981209677 0.4076 1.90038870968 16.5977322581 1.05035653708 1.0199672343 319 Best 319 319 0.0 0.0 ENST00000511204.1,ENST00000511438.5,ENST00000508239.1 UTR5,CDSintron,UTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 613 585594 chr8:143789973-143790071+ NoOverlap chr8 143789973 143790071 + 11.9679060922 33 0.629623772631 5.27625460697 6.69165148518 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143789972;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143789973-143790071%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143789973-143790071&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.99702064414 0.977711591624 1.02477107034 144872143 144872241 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144872142;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143789973-143790071%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144872143-144872241&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGSGVGLACQLHSATPTGEEEAPGLKCQVTELHDVLMKDVGNRIRADGRSVLR Same 586531 chr8:143789973-143790071+ 601 601 12 0 75 143788915 143790593 85 85;88;331;613;845;2035;14755 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143788915-143790593&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606060606061 0.802083333333 25.7770818182 0.846 7.91575757576 17.8613242424 0.993064828584 1.01973780522 801 92 92;111;801;1056;1111;2067;2390 31.9725636364 0.4377 6.0485969697 25.9239666667 1.04282514231 1.05271547104 431 116 116;127;431;967;1717;2161;3235 0.0 0.0 ENST00000532625.1 NC protein-coding gene protein-coding gene ENSG00000203499 614 479233 chr10:122756717-122756959+ NoOverlap chr10 122756717 122756959 + 4.58602346535 81 0.670512693717 -3.15875180489 7.74477527024 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122756716;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122756717-122756959%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122756717-122756959&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.696179289458 0.977468607111 1.05803179206 124516233 124516475 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124516232;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122756717-122756959%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124516233-124516475&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HQRPLPSVPTSCASPGAWMEVRLLNGTGRCSGRVEVLVQGTWGTVCDDLWDLAEATVVCRQLQCGQAVAAPTGAHFRAGSGKILLDDMQCVGSESHLGQCMR Same 481138 chr10:122756717-122756959+ 574 574 40 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.348387096774 18.5207518519 0.9078 -3.09864567901 21.6193975309 0.948652061803 1.06998025863 1098 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 59.0224419753 0.952 -3.6327962963 62.6552382716 0.942135290004 0.997026976649 1867 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.0625581255557 chr10:122588944-122589267+ 0.214274499553 chr10:122613974-122614297+ ENST00000439464.6 NC pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 615 491103 chr12:40440723-40440815+ NoOverlap chr12 40440723 40440815 + 11.8736064126 31 0.804499442553 6.97658379039 4.89702262225 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40440722;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40440723-40440815%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40440723-40440815&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04354341096 0.977196601902 0.904793852995 40834525 40834617 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40834524;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40440723-40440815%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40834525-40834617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLINDNSYSAENCSGGAEYVDCSDPKAQRRTNRTCSTRNIPVFDVSNIVLEFSH Same 493080 chr12:40440723-40440815+ 568 568 47 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.47311827957 0.195789473684 18.2434322581 0.9811 7.90454516129 10.3388870968 1.05140048197 1.03968778646 245 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 12.9100612903 0.5419 2.06070322581 10.8493580645 0.743537893509 0.871492171705 2653 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 616 475485 chr1:204243114-204243266- NoOverlap chr1 204243114 204243266 - 8.50197444593 51 0.805349334363 4.24470003855 4.25727440738 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204243113;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204243114-204243266-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204243114-204243266&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04699279582 0.977044753426 0.947674469813 204212242 204212394 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204212241;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204243114-204243266-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204212242-204212394&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSGFCLPQEPGPPRPPLPKAYVPLESPPAVPPLPSESRFWPYPSSPSWHRSGETARGQVPITLGSWR Same 477370 chr1:204243114-204243266- 570 570 46 0 270 204243114 204256899 352 352;616;2254;47266 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204243114-204256899&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.705882352941 0.465930719452 8.91545686275 0.9561 2.9365627451 5.97889411765 0.916368979121 0.962557143363 1246 Best 1246 1246;1477;3678;32366 16.0635627451 0.7106 1.63736078431 14.4262019608 0.97102268994 0.991715325998 1562 451 451;1562;1979;31464 0.0 0.0428316469405 chr2:240596319-240596521+ ENST00000272203.7 CDSintron coding exon(s) PLEKHA6 4 cassette exons 617 509638 chr15:80201773-80201949- NoOverlap chr15 80201773 80201949 - 15.1024745177 59 0.813249227674 8.56088474279 6.54158977495 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;80201772;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A80201773-80201949-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A80201773-80201949&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.937963803739 0.977012615841 1.02415452145 80494115 80494291 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;80494114;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A80201773-80201949-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A80494115-80494291&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EMEEPTPEPVYVDVDKGLTLACFVFLCLFLVVMIIRCAKVIMDPYSAIPTSTWEEQHLDD Same 511368 chr15:80201773-80201949- 567 567 50 0 432 80201773 80201949 Best 617 617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:80201773-80201949&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.598870056497 0.644808743169 20.3064576271 0.8614 10.3913745763 9.91508305085 1.02743037087 1.02758533299 504 Best 504 504 46.2131813559 0.8951 18.4232372881 27.7899440678 0.956914620665 1.01304996276 1742 Best 1742 1742 0.0 0.0 ENST00000560778.2 NC protein-coding gene protein-coding gene ENSG00000259417 618 505837 chr14:105854358-105854576- NoOverlap chr14 105854358 105854576 - 5.75854795732 73 0.818412204709 -2.92004103959 8.67858899691 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105854357;219;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105854358-105854576-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105854358-105854576&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.898834239213 0.976763744456 1.02482004747 106320463 106320681 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106320462;219;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105854358-105854576-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106320463-106320681&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YVTSAPMPEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKSTGKPTLYNVSLVMSDTAGTCY None NA NA 0 63 105837465 105856215 70 70;297;303;618;1534;1768;2725;3071;4703;4966;9883;19584;21248 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105837465-105856215&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.630136986301 0.559506067703 13.9063383562 0.7764 1.88860958904 12.0177287671 1.05848183939 1.02834578915 171 Best 171 171;488;606;760;1848;2075;2155;2623;3063;3220;4742;9758;24097 23.2867684932 0.5516 -4.44458356164 27.7313520548 0.923356849613 1.02734414639 1989 30 30;154;1395;1760;1980;1989;2291;2612;2659;3437;3454;6249;20954 0.0 0.0 ENST00000390559.6,ENST00000612473.1 NC,NCintron coding exon(s) IGHM alternative final coding exons 619 503813 chr14:35688685-35689089- NoOverlap chr14 35688685 35689089 - 5.33423332197 135 0.95175232912 -1.09809773206 6.43233105402 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;35688684;405;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A35688685-35689089-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A35688685-35689089&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.953453938406 0.976715570786 1.0686589498 36157891 36158295 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;36157890;405;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A35688685-35689089-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A36157891-36158295&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APVNRRMPHVTSTSKLSPTKRSLSETVTHRAKIMKIATKKRNSVHVTFRPSTESVQFYNPLENKEAPWKMRLRKLGGFSSGSSNSSTSNTHTSTNSATELVKPGVYRPLDTLGTASVSSKTVKESTEIPTTILQKEGIASSQLGSR Same 505656 chr14:35688685-35689089- 580 580 39 0 433 35688390 35689833 Best 619 619;1406;1746;5165;32191 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:35688390-35689833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.41975308642 0.281680344971 7.73435185185 0.9908 -1.0860837037 8.82043555556 1.02226674862 1.04883931877 554 Best 554 554;1849;2725;3200;13014 16.4433992593 0.7841 -2.67616444444 19.1195637037 1.05379720176 1.03553565995 277 Best 277 277;2355;2616;3577;13447 0.0 0.0 ENST00000307138.10,ENST00000554652.5 CDSintron,NCintron coding exon(s) RALGAPA1 intronic CDS 620 569289 chr5:141413416-141413442- NoOverlap chr5 141413416 141413442 - 6.82597790162 9 0.936808999432 -13.2628552384 20.08883314 ENST00000398610.2,ENST00000612503.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;141413415;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A141413416-141413442-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A141413416-141413442&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00459581022244 0.976468688445 0.98424757395 140792983 140793009 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;140792982;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A141413416-141413442-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A140792983-140793009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDQAAAARVQR Same 570305 chr5:141413416-141413442- 742 742 -122 0 434 141413416 141417615 Best 620 620;9619 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:141413416-141417615&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.0125 0.399722222222 0.9999 -20.6800777778 21.0798 0.197468600011 0.966659557803 8893 Best 8893 8893;10477 -40.3076555556 0.9966 -57.2186 16.9109444444 0.0440181950446 0.247810744483 19991 Best 19991 19991;52812 0.0 0.0 ENST00000398610.2,ENST00000253812.7,ENST00000612467.1 AntiCDS,AntiCDSintron,AntiNCintron not annotated putative regulatory region 621 520712 chr17:27793611-27793694- NoOverlap chr17 27793611 27793694 - 12.8671321571 28 0.848251207098 6.47972134288 6.38741081421 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;27793610;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27793611-27793694-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A27793611-27793694&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01544371077 0.976277825758 0.976698139602 26120637 26120720 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;26120636;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27793611-27793694-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A26120637-26120720&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMREGLGAACEAAGPRLCRLLCRILRPKPDCCPR Same 522126 chr17:27793611-27793694- 560 560 61 0 435 27793611 27793694 Best 621 621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:27793611-27793694&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.77380952381 0.885057471264 12.4078928571 0.8882 2.82793214286 9.57996071429 0.885797919683 1.03093949706 1344 Best 1344 1344 14.1934285714 0.369 0.999571428571 13.1938571429 0.708496482797 0.925264343023 2780 Best 2780 2780 0.0 0.0 ENST00000313735.10 CDSintron coding exon(s) NOS2 alternative first exon 622 480354 chr10:27397862-27398290- NoOverlap chr10 27397862 27398290 - 4.46559093577 143 0.76444381132 -3.15656220004 7.62215313581 ENST00000622555.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;27397861;429;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A27397862-27398290-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A27397862-27398290&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.870165726421 0.975693075084 1.10430347228 27686791 27687219 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;27686790;429;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A27397862-27398290-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A27686791-27687219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LRRIAEDCQIPLMVYNQAFIYFDQYAAILEDTVRNVLVASAAMFIVSLLLIPYPLCSLWVTFAIGSVIVGVTGFMAFWKVNLDSISMINLVICIGFSFDFSVHISYAFVSSSQPSVNQKSVEALYLLGYPVLQSAISTIIGVCVLAAAK Same 482263 chr10:27397862-27398290- 400 400 222 0 436 27397748 27398290 Best 622 622;7259 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:27397748-27398290&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.37296037296 0.268796992481 1.34635874126 0.5583 -4.88145874126 6.22781748252 0.509902960687 0.986807578056 3072 Best 3072 3072;33163 24.1029216783 0.758 -2.21932867133 26.3222503497 1.0266207736 1.02354051655 668 406 406;668 0.0 0.0 ENST00000622555.1,ENST00000438700.7 CDS,UTR3 pseudogene PTCHD3 (ENSG00000182077) converted from coding to a polymorphic pseudogene based on a truncation of the CDS by rs250532 ENSG00000182077 623 533907 chr2:68926742-68926822+ NoOverlap chr2 68926742 68926822 + 6.5591333663 27 0.889295796139 -4.06143693791 10.6205703042 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;68926741;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A68926742-68926822%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A68926742-68926822&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.778018825187 0.974546388097 1.01863206889 69153874 69153954 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;69153873;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A68926742-68926822%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A69153874-69153954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTALAIDSNSCFEIQLLSFMGLFICGETPGL Same 535291 chr2:68926742-68926822+ 600 600 23 0 437 68925700 68926822 Best 623 623;911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:68925700-68926822&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.257142857143 9.51763703704 0.9763 -3.40183703704 12.9194740741 0.932103336806 1.05623686989 1180 Best 1180 1180;1199 10.4297444444 0.343 -4.7583962963 15.1881407407 0.630317426413 0.985170792934 3064 2939 2939;3064 0.0 0.0 pseudogene Polymorphic pseudogene GKN3P (ENSG00000283586); rs10187256 accounts for the PTC and rs564515112 accounts for the non-canonical splice site 624 549346 chr22:50704164-50704247+ NoOverlap chr22 50704164 50704247 + 20.4432430054 28 0.834701740618 9.45701433931 10.9862286661 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50704163;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50704164-50704247%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50704164-50704247&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.988599320567 0.974408897069 1.00778041451 51142592 51142675 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51142591;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50704164-50704247%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51142592-51142675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QGLPHSSLLSFISDYVIDDKVAVLQKRDHEGFGFVLRGAK None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52380952381 0.732026143791 29.5728821429 0.9823 13.4853 16.0875821429 1.04091953482 1.04084721809 353 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 68.8107785714 0.9279 20.8682571429 47.9425214286 0.976773489992 1.04500281735 1479 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.301901118694 chr19:50689197-50689404- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 625 572373 chr6:106461785-106461877+ NoOverlap chr6 106461785 106461877 + 8.53459350332 31 0.831421771671 1.0748515379 7.45974196542 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;106461784;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A106461785-106461877%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A106461785-106461877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.997832506515 0.974327161555 1.04873313771 106909660 106909752 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;106909659;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A106461785-106461877%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A106909660-106909752&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASMGGSTCCGCGCGRCNGCANNRSRNIDSRHR Same 573398 chr6:106461785-106461877+ 561 561 64 0 438 106461785 106461877 Best 625 625 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:106461785-106461877&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.559139784946 0.303921568627 15.0788096774 0.9349 1.45132903226 13.6274806452 1.02984772363 1.04316936711 483 Best 483 483 17.7236709677 0.3631 1.29968064516 16.4239903226 0.904331438744 0.998128628369 2083 Best 2083 2083 0.0 0.0 ENST00000633556.1 CDSintron coding exon(s) CRYBG1 first coding exon. 626 492762 chr12:100739853-100740104+ NoOverlap chr12 100739853 100740104 + 10.4216642446 84 0.843386667248 2.77518095227 7.64648329236 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;100739852;252;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A100739853-100740104%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A100739853-100740104&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00695102617 0.974120243109 1.04507634447 101133631 101133882 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;101133630;252;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A100739853-100740104%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A101133631-101133882&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISTLYGFDCCHSPNMFISPGYDVAGPVAIGLTHWKNPYVQGRPTLPSDLPLFVSKDAGIPVYHRSFTRKTDQATPLSCPASLSITPVPSYSSSSQETLSQDTTGK Same 494744 chr12:100739853-100740104+ 571 571 55 0 439 100733773 100740104 Best 626 626;732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:100733773-100740104&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539682539683 0.348788927336 18.2010107143 0.9988 6.54199047619 11.6590202381 0.968427930469 1.03587126315 976 603 603;976 22.0750619048 0.6648 2.87328571429 19.2017761905 1.00107082846 1.03538258561 1093 Best 1093 1093;2729 0.0 0.0 ENST00000549155.5 NC coding exon(s) ANO4 extended by 3 5' exons 627 529185 chr19:51704269-51704502+ NoOverlap chr19 51704269 51704502 + 5.87453586228 78 0.693824399959 -0.79854103216 6.67307689444 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51704268;234;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51704269-51704502%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51704269-51704502&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.880967107722 0.973933034733 1.05798237716 52207522 52207755 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52207521;234;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51704269-51704502%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52207522-52207755&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APAVTGPPPRAETELQASFREVLRWAPRDAELIEPWRPSLGELLARPEALTPSNLFLLAVLGALASASATVLAW*VLGTPEPQHLAPR Same 530644 chr19:51704269-51704502+ 588 588 39 6 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.705128205128 0.764478764479 10.4788025641 0.9194 -0.591447435897 11.07025 0.998360041504 1.05012048133 757 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 8.52231153846 0.4068 -3.53679358974 12.0591051282 0.697616559746 0.961706941021 2820 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.118091804247 chr9:137252662-137252965+ ENST00000572565.5 NC protein-coding gene protein-coding gene ENSG00000182310 628 500534 chr13:113408094-113408186- NoOverlap chr13 113408094 113408186 - 12.4097322691 31 0.720682619728 -3.41805153508 15.8277838041 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;113408093;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113408094-113408186-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A113408094-113408186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02490759025 0.973654513485 0.974372298427 114062409 114062501 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;114062408;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113408094-113408186-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A114062409-114062501&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TCSDVMSVDAQTLKKKMGKLACDPAAHSILSSLLLYVTGR None NA NA 0 100 113403390 113410417 120 120;186;577;628;905;2155;43193 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:113403390-113410417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.623655913978 0.455882352941 21.1003967742 0.8437 -0.542632258065 21.6430290323 0.992854278576 0.964186409224 804 325 325;568;804;826;1027;2642;38380 24.1038096774 0.6113 -2.87549354839 26.9793032258 1.084274508 1.04514507045 110 Best 110 110;511;615;1448;1864;2789;42035 0.0 0.0 coding exon(s) ADPRHL1 alternative final coding exon 629 590122 chr9:122607942-122608010+ NoOverlap chr9 122607942 122608010 + 8.72461747864 23 0.835454005659 -6.27960438638 15.004221865 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;122607941;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122607942-122608010%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A122607942-122608010&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.83183822939 0.973642361856 0.949951868089 125370221 125370289 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;125370220;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122607942-122608010%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A125370221-125370289&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NQTCIYEFLLMGFSEHQEQQALLFGLFLVMYLVTVLENLLIILAIGSDLHLHTPHVPLPVQPVLFGYWLYLYNNSQYAR Same 591069 chr9:122607942-122608010+ 548 548 81 0 440 122607894 122608010 Best 629 629;7906 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:122607894-122608010&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.463768115942 0.0 7.56027826087 0.8458 -4.79404782609 12.354326087 0.662215168599 1.06409389361 2242 Best 2242 2242;5199 36.2481043478 0.9424 -23.3311043478 59.5792086957 0.963765806415 1.02348262868 1651 Best 1651 1651;2686 0.0 0.259303692324 chr11:56030419-56031393+ pseudogene extension OR1H1P pseudogene extended (ENSG00000228914) 630 588197 chr8:144063743-144063934- NoOverlap chr8 144063743 144063934 - 10.0501250575 64 0.718909027619 -0.759945243131 10.8100703006 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144063742;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144063743-144063934-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144063743-144063934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02186225744 0.97327381501 0.95142117092 145118646 145118837 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145118645;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144063743-144063934-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145118646-145118837&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLPGMSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSGFLAEVAASPWLPR Same 589143 chr8:144063743-144063934- 614 614 16 0 441 144060060 144063934 Best 630 630;5684;20291;40487 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144060060-144063934&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.65625 0.391836734694 17.2575296875 0.9353 0.262446875 16.9950828125 0.939460694944 0.956576710385 1144 Best 1144 1144;2250;2948;21092 14.308434375 0.4946 -5.80524375 20.113678125 1.02563413141 1.0565235271 685 Best 685 685;2819;5734;26413 0.129749262004 chr8:144012516-144012726+ 0.19935883087 chr11:1697246-1697635+ ENST00000567871.1 UTR5 coding exon(s) OPLAH alternative first exon 631 467306 chr1:153922886-153922999+ NoOverlap chr1 153922886 153922999 + 10.7021815102 38 0.75523444684 6.66317379004 4.03900772019 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;153922885;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922886-153922999%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A153922886-153922999&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06937721018 0.973197468118 0.879714621156 153895362 153895475 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;153895361;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922886-153922999%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A153895362-153895475&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGRAEQTLRYRRGQRRRRRLHRRRRHHTNKDADWAAAKRLGSALPTR Same 469173 chr1:153922886-153922999+ 594 594 37 0 442 153922296 153923335 Best 631 631;25620;45644;48477;49099;61066;66023;69687 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:153922296-153923335&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.728070175439 1.00470035253 2.76552105263 0.7898 -0.572707894737 3.33822894737 0.208753276247 0.729173353601 8425 Best 8425 8425;19724;29638;38385;45793;48574;52177;55960 2.43911315789 0.3513 -2.94957894737 5.38869210526 0.209475402375 0.709952877282 6002 Best 6002 6002;12984;19687;42340;44124;45459;47982;71255 0.0 0.0 ENST00000368655.4 AntiUTR5 not annotated putative regulatory region 632 485945 chr11:111462322-111462393+ NoOverlap chr11 111462322 111462393 + 6.00024152671 24 0.838724218611 -6.38970823834 12.3899497651 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111462321;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111462322-111462393%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111462322-111462393&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.607117419405 0.973181469936 0.971490798678 111333047 111333118 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111333046;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111462322-111462393%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111333047-111333118&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEEEACQALESRCLQEMERRARALSTHSSPER Same 487903 chr11:111462322-111462393+ 557 557 75 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.652777777778 0.135338345865 10.2985625 0.9768 -9.3796375 19.6782 0.956584950681 0.9449912058 1052 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 10.8974208333 0.4457 -11.8326208333 22.7300416667 0.818608072131 1.07238583164 2417 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 pseudogene unitary pseudogene ENSG00000255093 633 521944 chr17:47896176-47896316- NoOverlap chr17 47896176 47896316 - 7.82400205228 47 0.891559325941 3.38712115998 4.4368808923 ENST00000376741.4 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;47896175;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896176-47896316-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A47896176-47896316&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05238272621 0.973004388616 0.950255692676 45973542 45973682 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;45973541;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896176-47896316-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A45973542-45973682&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPDPWGPGRPRRQRPGPTAHYDIFLPGLRRLRRHREPDTARQATANPGARHRPSDGSLHQ Same 523369 chr17:47896176-47896316- 581 581 52 0 443 47896176 47896544 Best 633 633;10409;17370;20193;30561;56450;73094;73160 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:47896176-47896544&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.751773049645 1.11904761905 0.515195744681 0.9837 -3.2898106383 3.80500638298 0.265785423352 0.780721613116 6473 Best 6473 6473;12368;17549;37782;39868;58958;68592;73642 -4.18017446809 0.4237 -8.10281702128 3.92264255319 0.071306190188 0.656069713382 14976 Best 14976 14976;26600;36070;36380;45476;50232;50264;57233 0.0 0.0190225082756 chr2:74499333-74499537- ENST00000376741.4,ENST00000613139.1 AntiCDS,AntiUTR5 not annotated putative regulatory region 634 469796 chr1:2800063-2800140- NoOverlap chr1 2800063 2800140 - 9.71032696504 26 0.807165284551 -2.87907297107 12.5893999361 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;2800062;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A2800063-2800140-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A2800063-2800140&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.940102694054 0.972988563857 0.982753597121 2716628 2716705 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;2716627;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A2800063-2800140-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A2716628-2716705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SDTLSPEALLHSGRFEDCLAACSRALEAHPTGSEPQGR Same 471678 chr1:2800063-2800140- 603 603 31 0 48 2789592 2800821 54 54;238;634;805 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:2789592-2800821&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.350824587706 21.8081730769 0.9201 1.87889230769 19.9292807692 0.992736412173 0.987684221167 806 149 149;159;806;852 27.7427846154 0.6276 -2.43805384615 30.1808384615 1.05790665336 1.03996311518 240 Best 240 240;868;964;1943 0.0 0.0179304685251 chr8:144527342-144527787- ENST00000401094.9 NCintron coding exon(s) TTC34 5' extension 635 574518 chr6:33329029-33329271- NoOverlap chr6 33329029 33329271 - 6.81594063231 81 0.892926313053 -0.917838208469 7.73377884078 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;33329028;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A33329029-33329271-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A33329029-33329271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.98210255403 0.972867629394 1.04703674809 33296806 33297048 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;33296805;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A33329029-33329271-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A33296806-33297048&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VRMAEEGDVDEADVFLAFAQGPSPPRGPVRRALDKAFFIFLALFLTLLMLEAAYKLLWLLLWAKLGDWLLGTPQKEEELEL Same 575548 chr6:33329029-33329271- 510 510 125 0 444 33317636 33329271 Best 635 635;13120;16026;21481;25762 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:33317636-33329271&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.576131687243 0.254237288136 9.05854074074 0.966 -1.83173703704 10.8902777778 1.00101415493 1.05811019602 729 Best 729 729;14950;16253;42962;59844 10.011545679 0.345 -1.46884814815 11.4803938272 0.655791803135 0.941771893974 2981 Best 2981 2981;11075;22565;29427;67175 0.0 0.0 ENST00000453407.5,ENST00000494082.1 UTR5,NC protein-coding gene protein-coding gene ENSG00000285064 636 576935 chr6:167358152-167358295- NoOverlap chr6 167358152 167358295 - 7.90390421202 48 0.613995702042 1.64811446518 6.25578974684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;167358151;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167358152-167358295-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A167358152-167358295&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.915407467771 0.97279817159 1.04250946135 167771640 167771783 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;167771639;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167358152-167358295-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A167771640-167771783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NGDKTIVLSNGQKEIHTARFKRREYPDGTVKTVYCSGCQETKYASGRVK Same 577973 chr6:167358152-167358295- 658 658 -22 0 445 167358152 167371211 Best 636 636;896;36272 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:167358152-167371211&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.727272727273 9.72088125 0.6379 -1.50537291667 11.2262541667 0.970063353802 1.05336779678 964 Best 964 964;1813;18386 45.2545833333 0.8867 1.28624166667 43.9683416667 0.99126298913 0.952074974889 1256 768 768;1256;19343 0.0 0.34646019652 chr13:24883177-24883369- ENST00000366827.6,ENST00000508373.5,ENST00000515138.1 UTR3,NC,AntiNC pseudo-exon TCP10 pseudo-exon 637 493950 chr12:132510003-132510275+ NoOverlap chr12 132510003 132510275 + 8.28420224688 91 0.711950413209 -2.63579892887 10.9200011757 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132510002;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132510003-132510275%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132510003-132510275&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04796330158 0.972784061931 0.983862381215 133086589 133086861 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;133086588;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132510003-132510275%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A133086589-133086861&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QPQRLVEAPEQPGPLTPSLLGPGRPRQQKQPLMGPEQPCPPKRPLMGPEQPCQPLRPLMGPNKPCKPQPLLPIPDRPSLLGQPGPPCRPLLGLLCQPR Same 495941 chr12:132510003-132510275+ 666 666 -29 0 98 132509173 132510440 116 116;202;637;794;2162;3860;16489;25303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132509173-132510440&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.725274725275 0.500539257981 14.0117582418 0.8576 -1.77438021978 15.7861384615 0.946877348723 1.00030457114 1110 6 6;93;263;1110;1440;2944;5926;7480 9.56136923077 0.5631 -8.84136373626 18.402732967 0.917504751308 1.07873161961 2026 2003 2003;2026;2435;2663;4003;7601;8523;55779 0.0 0.192231850755 chr7:75421509-75423203- ENST00000542061.2,ENST00000434748.2 NC,CDSintron coding exon(s) FBRSL1 alternative final coding exon 638 529075 chr19:49838582-49838821+ NoOverlap chr19 49838582 49838821 + 11.4012688085 80 0.705904669261 3.63582254611 7.76544626239 ENST00000593767.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49838581;240;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49838582-49838821%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49838582-49838821&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00678912044 0.972732529554 1.03863272339 50341839 50342078 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;50341838;240;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49838582-49838821%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A50341839-50342078&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSEESEIFLVPMSLSQAAKRKREGEGRVFREKWERAYFFVEVKSMPMCLICKQIVSVLKEYNLKRHYESKHSKSYDQYTEQTRDAILNELKKGLKCQ Same 530534 chr19:49838582-49838821+ 599 599 39 0 446 49832416 49838821 Best 638 638;72574 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49832416-49838821&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.429166666667 0.832049306626 16.9262125 0.9199 3.55505625 13.37115625 0.951557913787 1.01886282616 1084 Best 1084 1084;40661 16.9262125 0.2875 3.55505625 13.37115625 0.808704361027 0.968473494023 2445 Best 2445 2445;56501 0.0 0.0 ENST00000593767.1,ENST00000596521.1 CDS,AntiNC coding exon(s) MED25 alternative final exon had frame corrected 639 463037 chr1:6455193-6455411+ NoOverlap chr1 6455193 6455411 + 10.1048560992 73 0.754723555645 2.0661904175 8.03866568167 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;6455192;219;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6455193-6455411%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A6455193-6455411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0017608372 0.972700350649 1.03140740078 6515253 6515471 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;6515252;219;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6455193-6455411%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A6515253-6515471&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QAALPEPEQLARRPPLCTKLRGVQDYLDLRKERIVYLFLEHWRRWACRGPGRRAQARLRGLLPRVAAAGAGPGLEATDAPR Same 464901 chr1:6455193-6455411+ 591 591 48 0 194 6447414 6467425 235 235;370;505;560;639;1215;12903;51895 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:6447414-6467425&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.762557077626 0.945051783659 16.8686657534 0.8339 2.75721780822 14.1114479452 0.98249773409 0.999068066707 884 395 395;511;536;884;1170;1602;50220;68713 26.9496315068 0.7118 -1.07613561644 28.0257671233 0.922037519689 1.03045943004 2000 638 638;851;876;1267;1741;2000;23707;36104 0.0 0.307903032373 chr2:238130128-238131732+ ENST00000377828.5,ENST00000477679.1 CDSintron,NCintron coding exon(s) ESPN very large alternative final exon 640 480307 chr10:24590340-24590480- NoOverlap chr10 24590340 24590480 - 7.85319567868 47 0.861900007954 3.33558087384 4.51761480484 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;24590339;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24590340-24590480-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A24590340-24590480&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05188533608 0.972461202993 0.956359681687 24879269 24879409 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;24879268;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24590340-24590480-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A24879269-24879409&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGEVGGVYHTVMSLVDSVMSLMDSWNCRKKEDCCPHCSCLVCRNPRFL Same 482216 chr10:24590340-24590480- 576 576 64 0 447 24590340 24590480 Best 640 640;7749 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:24590340-24590480&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.510638297872 0.339214113873 8.56167234043 0.9632 4.13859361702 4.4230787234 0.830685412917 0.855138699766 1555 Best 1555 1555;4857 16.5684744681 0.9697 0.165042553191 16.4034319149 0.932886187908 1.02021578409 1929 Best 1929 1929;4812 0.0 0.0 ENST00000320481.10,ENST00000486374.5 CDSintron,NCintron coding exon(s) ARHGAP21 alternative final coding exon that would suggest NMD, although the CDS is conserved in vertebrates 641 552679 chr3:67927434-67927625+ NoOverlap chr3 67927434 67927625 + 4.91667661141 64 0.668634842069 -2.76834212802 7.68501873943 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;67927433;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A67927434-67927625%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A67927434-67927625&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.677765750295 0.972266529906 1.05702765994 67977858 67978049 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;67977857;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A67927434-67927625%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A67977858-67978049&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MAQHFYFSLGNIEVFFISQAWVYDSGK*KYILVQNNKEKTTPEYQVLVKGVVSSRAMQDKKEVIEGKVLMVNCSIPEVK Same 553620 chr3:67927434-67927625+ 648 648 -7 17 448 67927434 67927787 Best 641 641;3356 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:67927434-67927787&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.134171907757 -4.757640625 0.1765 -5.24256875 0.484928125 -0.044075350033 0.362774790758 68757 29637 29637;68757 -3.13255 0.1244 -5.7023 2.56975 -0.0462289128615 0.613922446979 69503 32030 32030;69503 0.0 0.375241832227 chr17:64377824-64378117- ENST00000482677.5 NCintron not annotated potentially spurious 642 592928 chr9:114098112-114098192- NoOverlap chr9 114098112 114098192 - 15.2047334777 27 0.814548064506 5.24869630845 9.95603716925 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;114098111;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114098112-114098192-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A114098112-114098192&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.995869769047 0.972148172126 1.04215102471 116860392 116860472 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;116860391;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114098112-114098192-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A116860392-116860472&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFSCTVFTFGQTGSGKTYTLTGPPPQVSER Same 593881 chr9:114098112-114098192- 617 617 25 0 201 114097703 114099171 245 245;413;642;1048;5747 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:114097703-114099171&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.592592592593 0.147005444646 21.6493333333 0.9639 5.77232222222 15.8770111111 1.02922334532 1.03230676909 489 144 144;336;489;1116;1913 26.1995925926 0.5522 5.58347407407 20.6161185185 1.06280985558 1.02892618777 206 115 115;195;206;3221;3941 0.0 0.0609758764773 chr6:33404852-33405631+ ENST00000374118.7,ENST00000468460.1 UTR5,NC coding exon(s) KIF12 coding exons added to make inferred transcript model 643 548918 chr22:41971511-41971723+ NoOverlap chr22 41971511 41971723 + 4.3023084125 71 0.818320497487 -6.10807604478 10.4103844573 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;41971510;213;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41971511-41971723%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A41971511-41971723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.701583114103 0.971266904825 0.970198292333 42367515 42367727 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;42367514;213;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41971511-41971723%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A42367515-42367727&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QTTWMDHNFAPAPPEMQSHGAPGPGTSFSHSHVLGRPIRPSRLPGGGSPLTPVLRKTIHLDTFPQSHIPQTSSRLGLGARTR Same 550290 chr22:41971511-41971723+ 499 499 144 0 449 41971511 41976889 Best 643 643;1518;1625;1678;2356;48456;54626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:41971511-41976889&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.652582159624 0.332219251337 8.45136478873 0.9619 -4.48870985915 12.9400746479 0.993386004845 1.01760322417 797 Best 797 797;1243;1705;1853;3195;37930;49782 6.91622394366 0.3991 -7.06937183099 13.9855957746 0.715240251373 1.01324202089 2758 Best 2758 2758;2926;3000;4195;4636;26254;61260 0.0 0.0704478888414 chr5:176577399-176577554+ coding exon(s) SEPT3 alternative first exon 644 483249 chr11:1094180-1094410+ NoOverlap chr11 1094180 1094410 + 5.18184152284 77 0.421961299553 -3.49813504498 8.67997656782 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1094179;231;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1094180-1094410%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1094180-1094410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.516257487274 0.970176945892 1.0305425991 1092118 1092348 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1092117;231;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1094180-1094410%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1092118-1092348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QELGFASLELCCLWSDWINEDHPSSGSDDGDRETFDGVCGAPEDIECRSVKDPHLSLEQLGQKVQCDVSVGFICKNEDQFGNGPFGLCYDYKIRVNCCWPMDK Same 485179 chr11:1094180-1094410+ 633 633 11 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.536796536797 0.555288461538 19.1490844156 0.8541 0.81324025974 18.3358441558 0.941888172416 0.993443839496 1127 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 31.5314298701 0.7792 -5.66807142857 37.1995012987 0.96361845567 1.00322564061 1655 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.035750051129 chr11:1182155-1192525+ 0.871317216654 chr11:1182155-1192525+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 645 597345 chrX:139691925-139692026- NoOverlap chrX 139691925 139692026 - 7.43660296149 34 0.60120546273 -2.71914698315 10.1557499446 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;139691924;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A139691925-139692026-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A139691925-139692026&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.696115286906 0.9700423774 1.01247047206 138774084 138774185 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;138774083;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A139691925-139692026-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A138774084-138774185&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPGLPQNPDGCTFMPIAQAIPLQVDMAMALQRVRIAEKYGKNYLCLLQAVFVAGK Same 597995 chrX:139691925-139692026- 693 693 -48 0 450 139691925 139692026 Best 645 645 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:139691925-139692026&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.627450980392 0.498046875 9.37703823529 0.8369 -7.29986176471 16.6769 1.01087844118 0.958731361368 648 Best 648 648 8.97863235294 0.3064 -8.06465882353 17.0432911765 0.712426294352 1.04385060882 2766 Best 2766 2766 0.0 0.0 ENST00000520602.5,ENST00000414978.5 UTR5,UTR5intron coding exon(s) MCF2 extended to upstream ATG 646 562299 chr4:103142463-103142516- NoOverlap chr4 103142463 103142516 - 7.0477331883 18 0.873360290939 -8.749727673 15.7974608613 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;103142462;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A103142463-103142516-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A103142463-103142516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.524287623145 0.97003650245 0.9462627003 104063620 104063673 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;104063619;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A103142463-103142516-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A104063620-104063673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MEQDQLREGLREIEAKVSSFLSLAIQCIVFLQQ Same 563294 chr4:103142463-103142516- 558 558 88 0 394 103142463 103142621 550 550;646 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:103142463-103142621&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.425925925926 0.0 8.92006111111 0.9264 -11.9057111111 20.8257722222 0.728302214426 0.947042219231 1975 Best 1975 1975;2305 10.2323333333 0.3852 -15.1397055556 25.3720388889 0.621630512185 1.07061378877 3091 Best 3091 3091;3300 0.0806155383438 chr4:103140814-103141104- 0.196196839554 chr4:103144331-103144618- ENST00000265148.7 CDSintron pseudo-exon CENPE pseudo exon 647 498817 chr13:98395707-98395952+ NoOverlap chr13 98395707 98395952 + 11.6319756301 82 0.737215451807 4.33722192667 7.2947537034 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;98395706;246;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98395707-98395952%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A98395707-98395952&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.99734428661 0.969844097979 1.04311413714 99047961 99048206 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;99047960;246;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98395707-98395952%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A99047961-99048206&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASPHSAKSSRPPSGEFLDDDSADITFDMSGSPRLPRHSSLIDEMFKGSAGHSPLATPLSPSSSSSSPNMSWDRTGSQGYVSENGHDHR Same 500834 chr13:98395707-98395952+ 613 613 34 0 183 98395479 98396402 221 221;647;961;993;1497;3791;4580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:98395479-98396402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.532520325203 0.461971830986 21.0775 0.9945 6.29329878049 14.7842012195 0.972149867345 1.00628300185 952 101 101;518;673;881;952;1128;1340 28.862397561 0.8374 0.34377804878 28.5186195122 0.996145492443 1.04048482588 1169 855 855;856;865;1168;1169;1303;3287 0.0 0.126955709027 chr2:241441304-241442533+ ENST00000319562.10 CDSintron coding exon(s) FARP1 alternative final exon 648 474109 chr1:150364575-150364733- NoOverlap chr1 150364575 150364733 - 8.80730740474 53 0.785843370459 4.82234517246 3.98496223228 ENST00000369067.7,ENST00000369068.4,ENST00000401000.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;150364574;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A150364575-150364733-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A150364575-150364733&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.04186138054 0.96963007073 0.931289741045 150337051 150337209 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;150337050;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A150364575-150364733-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A150337051-150337209&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPYCCLRRRRPPSSRFAQALLLLWRRRRRRRRERAKQSLRVRESRRWGGKLGGGDGARAGLFWR Same 475990 chr1:150364575-150364733- 615 615 33 0 451 150364575 150365278 Best 648 648;949;21763 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:150364575-150365278&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.716981132075 1.06745524297 4.84607169811 0.8329 1.72051320755 3.12555849057 0.444888483193 0.768870457383 3551 Best 3551 3551;5445;12300 -1.45072264151 0.4949 -3.20983962264 1.75911698113 0.11192825791 0.577463871569 10462 4759 4759;6267;10462 0.0 0.0 ENST00000401000.8,ENST00000492220.1 AntiCDS,AntiNCintron not annotated putative regulatory region 649 540097 chr2:127485902-127486009- NoOverlap chr2 127485902 127486009 - 9.14562218719 36 0.904499716013 4.79138613409 4.3542360531 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;127485901;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A127485902-127486009-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A127485902-127486009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07537193243 0.969354142311 0.897229875919 128243478 128243585 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;128243477;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A127485902-127486009-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A128243478-128243585&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLSRLEKHKRRFAEQKRLSKVHRAVKFSIEGNRMPL*AWPYQSIYTR Same 541459 chr2:127485902-127486009- 606 606 43 1 452 127485902 127486009 Best 649 649 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:127485902-127486009&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.490740740741 0.620689655172 11.2399861111 0.9371 5.69123888889 5.54874722222 0.890376237434 0.883058534677 1324 Best 1324 1324 29.8682055556 0.9103 9.5866 20.2816055556 1.04631704144 1.03320426522 386 Best 386 386 0.0 0.0 ENST00000295321.8,ENST00000412979.1,ENST00000454503.6 CDSintron,NCintron,AntiNCintron coding exon(s) IWS1 alternative final exon 650 506445 chr15:41048231-41048266+ NoOverlap chr15 41048231 41048266 + 5.00146659215 12 0.96580453193 -10.9344251156 15.9358917077 ENST00000361937.7,ENST00000401393.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;41048230;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A41048231-41048266%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A41048231-41048266&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0562302636871 0.968789377744 0.937595146618 41340429 41340464 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;41340428;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A41048231-41048266%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A41340429-41340464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ERPLDIVWCKWRKNP Same 508158 chr15:41048231-41048266+ 734 734 -84 0 453 41048231 41048266 Best 650 650 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:41048231-41048266&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.654545454545 -6.079125 0.9961 -17.1851416667 11.1060166667 0.0221115550292 0.99687186536 31766 Best 31766 31766 -20.753275 0.8196 -42.79255 22.039275 -0.00237483627608 0.830291896916 36559 Best 36559 36559 0.0 0.0 ENST00000361937.7,ENST00000616814.4,ENST00000558357.5 AntiCDS,AntiUTR5,AntiNC not annotated putative regulatory region 651 520013 chr17:4801292-4801372- NoOverlap chr17 4801292 4801372 - 17.4050037861 27 0.886793316548 8.51460740301 8.89039638307 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;4801291;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A4801292-4801372-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A4801292-4801372&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.997649648416 0.968550309293 1.0075645918 4704587 4704667 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;4704586;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A4801292-4801372-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A4704587-4704667&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEVNPDLQLPSSSNLLGLSPAAPPDPSPAIAPTMAEGGVPSPGPGAYFSRKARLSFRHQLHDIASANDSTI Same 521420 chr17:4801292-4801372- 610 610 41 0 454 4801292 4807131 Best 651 651;1841;59725 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:4801292-4807131&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.567901234568 0.50625 25.0265481481 0.9917 11.2882333333 13.7383148148 1.0429948589 1.03933426693 332 Best 332 332;2105;70127 31.028262963 0.5475 13.2603925926 17.7678703704 1.04613957218 0.977518666965 389 Best 389 389;3344;71746 0.0 0.0 ENST00000571067.1 NC protein-coding gene protein-coding gene ENSG00000262165 652 585662 chr8:144473132-144473371+ NoOverlap chr8 144473132 144473371 + 13.5704212829 80 0.727838750286 7.56197877433 6.00844250862 ENST00000301332.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144473131;240;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144473132-144473371%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144473132-144473371&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.96810767761 0.96841610745 1.0212548962 145698515 145698754 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145698514;240;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144473132-144473371%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145698515-145698754&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASCPQISTRPEDLGETVCSLKFADRVGQVELGPARRRRVPRSSGTPSSLSTDTPLTGTPCTPTPSPGSPPCPSPDNGSGSALAPAEGLPL Same 586600 chr8:144473132-144473371+ 608 608 44 0 455 144462230 144473371 Best 652 652;52414;53196;56283;57650;72805 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144462230-144473371&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.716666666667 0.878007598143 21.85529125 0.8636 13.833405 8.02188625 0.982284357464 0.987963619629 886 Best 886 886;41693;42652;43967;45511;56412 30.97537625 0.6648 12.0662325 18.90914375 0.973393944117 1.01121365799 1535 Best 1535 1535;18941;28339;51248;53436;61641 0.0 0.191196519616 chr16:57760282-57760416- ENST00000301332.2,ENST00000531425.5 CDS,NC coding exon(s) KIFC2 frame corrected in final exon 653 502130 chr14:75281463-75281513+ NoOverlap chr14 75281463 75281513 + 5.55359414592 17 0.938868767924 -8.82394111156 14.3775352575 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;75281462;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75281463-75281513%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A75281463-75281513&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.282532215068 0.968288745792 0.94777964977 75748166 75748216 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;75748165;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75281463-75281513%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A75748166-75748216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPQVPLPELVHYREEKHIFPR Same 504032 chr14:75281463-75281513+ 674 674 -21 0 456 75277155 75281681 Best 653 653;2707;13175;15627;32302;36623;37128;61784;65414 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:75277155-75281681&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.529411764706 0.283333333333 -3.23668235294 0.9894 -14.0546235294 10.8179411765 0.126569920961 1.03100250527 13388 3768 3768;6703;12830;13388;17137;39238;49903;64236;73058 -13.4652352941 0.5798 -24.3125411765 10.8473058824 0.00329076505532 0.726875538467 33752 9152 9152;14942;21009;33752;35396;56305;59433;66250;68586 0.0 0.0 ENST00000303562.8 UTR3 not annotated putative regulatory region 654 579478 chr7:134209516-134209674+ NoOverlap chr7 134209516 134209674 + 13.4706811777 53 0.826226515861 0.254186756487 13.2164944212 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;134209515;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134209516-134209674%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A134209516-134209674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.961861299731 0.96821989843 0.938643619793 133894268 133894426 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;133894267;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134209516-134209674%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A133894268-133894426&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAPGTLLPRSRLAPTRLPQPQVLAPLQSRRPTPKLLSPSREEALGTTSHQTMTVSPR Same 580521 chr7:134209516-134209674+ 602 602 52 0 334 134208697 134210967 457 457;654;903;1140;1971;3155;4173;9542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:134208697-134210967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.622641509434 0.277244986922 20.1829075472 0.9727 2.36223584906 17.8206716981 0.959006826252 0.948800631568 1039 146 146;1038;1039;1252;1266;1962;1997;10575 21.3365981132 0.3755 2.63676603774 18.6998320755 1.12214791968 1.0338293868 15 Best 15 15;2334;2668;2929;2944;3198;3972;9142 0.0 0.0 ENST00000285928.2 CDSintron coding exon(s) LRGUK alternative large final exon 655 534720 chr2:110269880-110269981+ NoOverlap chr2 110269880 110269981 + 11.4975793782 34 0.575692378119 4.36971764004 7.1278617382 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110269879;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110269880-110269981%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110269880-110269981&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.946570505718 0.968128474158 1.04264024659 111027457 111027558 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111027456;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110269880-110269981%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111027457-111027558&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FTCVVFTLCFWFLFSGLKTAEGSP*FENILEIAFELYVLVTTANSPDIMSSHP Same 536072 chr2:110269880-110269981+ 659 659 -4 10 64 110261435 110272049 71 71;655;738;1590;1755;2806;2841;5622 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110261435-110272049&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.480392156863 0.511705685619 20.2514941176 0.7721 8.74922941176 11.5022647059 1.00160093148 1.05326219994 725 39 39;230;616;725;1137;1749;1796;2218 44.7153852941 0.7769 14.5701588235 30.1452264706 0.971356537435 1.04672383141 1559 260 260;295;766;1197;1279;1318;1559;1820 0.0 0.0 ENST00000562613.2 NCintron pseudogene ion transport protein domain-containing transcribed unprocessed pseudogene (ENSG00000261760) 656 553605 chr3:141685870-141685950+ NoOverlap chr3 141685870 141685950 + 13.3596183249 27 0.786892500191 2.98772591352 10.3718924114 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;141685869;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141685870-141685950%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A141685870-141685950&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.992475603941 0.967882380748 1.04474330495 141404712 141404792 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;141404711;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141685870-141685950%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A141404712-141404792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TVYSAPFPSELFLDGNYLECSGALALLRPIAGFAETQGEDQPAPGSPDTGNPPQR Same 554554 chr3:141685870-141685950+ 634 634 22 0 32 141681521 141685950 32 32;141;656 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:141681521-141685950&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.543209876543 0.50625 18.8956407407 0.8915 6.27926296296 12.6163777778 0.969309822861 1.05005137817 970 145 145;236;970 19.8133 0.3586 4.29211851852 15.5211814815 0.843474176328 0.961054547035 2337 33 33;81;2337 0.0 0.0 ENST00000474979.3 NC pseudogene unitary pseudogene ENSG00000242104 657 537900 chr2:25743963-25744037- NoOverlap chr2 25743963 25744037 - 7.25812395573 25 0.933763637751 -3.8697960484 11.1279200041 ENST00000336112.8,ENST00000404843.5,ENST00000435504.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;25743962;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A25743963-25744037-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A25743963-25744037&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.791822362484 0.967726498261 1.01198868988 25966832 25966906 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;25966831;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A25743963-25744037-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A25966832-25966906&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSLIVSLEHNYSKPPQCLQHLPSVEHAQVSHHQPT Same 539272 chr2:25743963-25744037- 665 665 -8 0 457 25743963 25744166 Best 657 657;907 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:25743963-25744166&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586666666667 0.16339869281 8.712496 0.999 -6.52502 15.237516 0.931311507082 1.02143524242 1184 Best 1184 1184;1907 2.028296 0.8279 -21.856188 23.884484 0.607285399862 1.10399175674 3142 Best 3142 3142;3756 0.0 0.0907726661696 chr18:33742888-33746595+ ENST00000336112.8 CDS under investigation The PhyloCSF signal for ASXL2 changes frame in the final exon and is restored to the orginal frame after ~200bp. This sequence conformation is conserved in mammals, and while this could conceivably indicate a programmed frameshift, it could instead be explained by an unknown splice variant that causes this exon to be translated in a different frame. 658 481618 chr10:99929612-99929698- NoOverlap chr10 99929612 99929698 - 11.6624792136 29 0.95848862019 5.82657935393 5.83589985967 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;99929611;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A99929612-99929698-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A99929612-99929698&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01915036576 0.967584338506 0.960181411235 101689369 101689455 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101689368;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A99929612-99929698-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101689369-101689455&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNGPETWRRNSCLRRTAPSTLRRSEFVQNSKKTQGMNSASLLK Same 483534 chr10:99929612-99929698- 619 619 39 0 458 99929612 99930589 Best 658 658;1488 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:99929612-99930589&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.563218390805 0.581939799331 14.3855896552 0.9988 6.4212862069 7.96430344828 1.01607429742 0.972634467739 604 Best 604 604;1969 24.1262862069 0.4933 9.25127241379 14.8750137931 1.01154560767 0.942055806409 918 Best 918 918;3810 0.0 0.0 ENST00000324109.8,ENST00000427093.5 CDSintron,AntiNCintron coding exon(s) DNMBP alternative first exon 659 516769 chr17:27621191-27621271+ NoOverlap chr17 27621191 27621271 + 12.7249074026 27 0.891732718451 5.46176311153 7.26314429111 ENST00000578981.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;27621190;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27621191-27621271%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A27621191-27621271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00354227608 0.967520754437 1.0119326075 25948217 25948297 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;25948216;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27621191-27621271%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A25948217-25948297&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVEWSLGTPSRWRSRYYGKGRYGHPDFKSSCPILEE Same 518158 chr17:27621191-27621271+ 587 587 72 0 459 27621191 27621271 Best 659 659 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:27621191-27621271&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.803571428571 9.67631481481 0.9634 2.96638888889 6.70992592593 0.773218954249 0.912390326976 1780 Best 1780 1780 10.6770333333 0.3958 2.39732962963 8.2797037037 0.472742483284 0.767610771386 3644 Best 3644 3644 0.0 0.0 ENST00000578981.1,ENST00000268763.10 CDS,CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 660 570275 chr6:4115457-4115663+ NoOverlap chr6 4115457 4115663 + 9.15744497681 69 0.751499530619 -0.744214407344 9.90165938415 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;4115456;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A4115457-4115663%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A4115457-4115663&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01513733147 0.967457599868 0.977073584048 4115691 4115897 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;4115690;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A4115457-4115663%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A4115691-4115897&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NMQPTEDLKSVICRLSAFGPIQSATVCGRQSAIVAFKDMTSACNAVSAFQSRTPGTMFQCSWQQRFMSKDVR Same 571299 chr6:4115457-4115663+ 616 616 44 0 460 4115457 4115663 Best 660 660 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:4115457-4115663&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.473429951691 0.172715894869 18.171126087 0.9519 2.78595507246 15.3851710145 0.924689804245 0.978918910392 1215 Best 1215 1215 16.0973985507 0.5506 -5.34568405797 21.4430826087 1.00870319612 1.05541146751 965 Best 965 965 0.0 0.0 ENST00000436110.1,ENST00000380175.8,ENST00000427996.5 NC,CDSintron,NCintron pseudogene C6orf201 pseudoexon, led to locus being reannotated as a unitary pseudogene ENSG00000185689 661 470618 chr1:21089132-21089212- NoOverlap chr1 21089132 21089212 - 16.6045184665 27 0.900289073693 8.51198893992 8.0925295266 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;21089131;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A21089132-21089212-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A21089132-21089212&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.999209172425 0.967415833333 0.996990171892 21415625 21415705 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;21415624;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A21089132-21089212-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A21415625-21415705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPRGPVQQPLEDRIFTPAVSAVYSTVSV None NA NA 0 461 21089132 21089212 Best 661 661 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:21089132-21089212&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.518518518519 0.5625 24.2303592593 1.0 12.5440666667 11.6862925926 1.04270111674 1.02136649442 335 Best 335 335 32.6137296296 0.5093 17.4363814815 15.1773481481 1.01166791708 0.920466734464 916 Best 916 916 0.0 0.0 ENST00000356916.7,ENST00000463775.1 UTR5,NC coding exon(s) EIF4G3 5' coding exons 662 476344 chr1:237943145-237943555- NoOverlap chr1 237943145 237943555 - 8.0839350452 137 0.51323541942 -5.12779421028 13.2117292555 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;237943144;411;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237943145-237943555-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A237943145-237943555&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.958997519784 0.967210823536 0.89607023102 238106445 238106855 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;238106444;411;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237943145-237943555-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A238106445-238106855&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LYTIRKGPNTVGPYGKLQPFADAIKLFTKEPLQFSTSTIPVYIIAPTLALSIALLLWTPLPIPDPLINFNVSLLFILATSSLAVYSILSSG*ASNSNYALIGILRAVAQTISHEVTLAIILLSVLLISGSFNLYALITMQEFL Same 478238 chr1:237943145-237943555- 788 788 -126 49 236 237940783 237943644 302 302;662;735;826;878;1214;1221;3426 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:237940783-237943644&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.450121654501 0.632307692308 0.876587591241 0.1198 -2.97294233577 3.84952992701 0.0940946825789 0.824144684047 16524 15205 15205;16524;19960;20662;24160;29790;35876;52414 43.3834481752 0.7135 1.21081459854 42.1726335766 1.031430564 1.0133668978 604 316 316;468;540;604;1096;1312;1906;1926 0.0 0.821117942089 chrM:3307-4262+ pseudogene mitochondrially encoded NADH dehydrogenase 2 (MT-ND2) pseudogene (ENSG00000283166) 663 558742 chr4:36281786-36281851+ NoOverlap chr4 36281786 36281851 + 6.37318636071 22 0.922026398108 -6.15785013207 12.5310364928 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;36281785;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A36281786-36281851%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A36281786-36281851&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.602766339099 0.967048678302 0.977393806217 36283408 36283473 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;36283407;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A36281786-36281851%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A36283408-36283473&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MDMEYMGSGKLGQILKQIWRQNQMLKQALLGDDLCEGAGGATWMATVVFLGQELSSALHQLLEHTSGTLR Same 559725 chr4:36281786-36281851+ 660 660 3 0 79 36281786 36281965 92 92;663 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:36281786-36281965&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.439393939394 0.0 8.19566363636 0.9584 -5.1322 13.3278636364 0.778809630652 1.05659070725 1762 861 861;1762 2.55754545455 0.536 -18.5303227273 21.0878681818 0.595156318283 1.08804016643 3185 2493 2493;3185 0.0 0.0 ENST00000357504.7 UTR5 coding exon(s) DTHD1 5' coding exon 664 529347 chr19:58581421-58581672+ NoOverlap chr19 58581421 58581672 + 4.9061952157 84 0.467885208558 -2.822084506 7.7282797217 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;58581420;252;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58581421-58581672%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A58581421-58581672&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.557103863802 0.966214696405 1.05664847399 59092788 59093039 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;59092787;252;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58581421-58581672%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A59092788-59093039&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DRKAINLQVKLEALWRFEAGEKLSRIGKALGLSNSTLATIRDNKEKIWASSQEATLQAATKLTRGRSLVMENMEQLLSMRMEDQSQR Same 530806 chr19:58581421-58581672+ 598 598 66 0 462 58578105 58581980 Best 664 664;10695;22905;23620;29825;45792 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:58578105-58581980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.603174603175 0.62156448203 12.7754857143 0.4852 -1.57744642857 14.3529321429 1.11083765722 1.00379872772 12 Best 12 12;3572;4861;7429;7858;42404 25.6781154762 0.4974 -1.07681666667 26.7549321429 0.906940012459 1.04707567492 2070 Best 2070 2070;2199;2636;3032;3216;7342 0.0 0.355942467564 chr16:89971359-89971922- ENST00000493504.1,ENST00000473164.1 NC,NCintron pseudogene CENPBD1P1 CENPB DNA-binding domains containing 1 pseudogene 1 (ENSG00000285138) 665 491015 chr12:30306062-30306205+ NoOverlap chr12 30306062 30306205 + 5.5985458338 48 0.608360672414 -2.46915840377 8.06770423757 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;30306061;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A30306062-30306205%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A30306062-30306205&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.621837918933 0.965938666411 1.05146675798 30458995 30459138 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;30458994;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A30306062-30306205%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A30458995-30459138&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GITAQVCSTLLPSSQVLWALCQMLSGFLCQEAVQELYLQLLLAVLCHHCWAI*QNAPQKMVEHSK Same 492992 chr12:30306062-30306205+ 725 725 -60 9 463 30306062 30306205 Best 665 665 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:30306062-30306205&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.534722222222 0.099173553719 1.09940625 0.1026 -1.6045625 2.70396875 0.0397005331898 0.691624135253 25643 Best 25643 25643 6.39873333333 0.1393 -1.10802083333 7.50675416667 0.202808089462 0.815262324029 6168 Best 6168 6168 0.0 0.0 pseudogene maestro heat-like repeat-containing protein family member pseudogene (ENSG00000284682) 666 509714 chr15:82699633-82699875- NoOverlap chr15 82699633 82699875 - 7.21965065911 81 0.664503088068 2.15329879872 5.06635186039 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;82699632;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A82699633-82699875-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A82699633-82699875&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.992961424253 0.965785325071 1.01847510888 83368385 83368627 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;83368384;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A82699633-82699875-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A83368385-83368627&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLMQRFLQLPGAVVRPGVRGACGADQEAASPVLAPEGGPPLRYQALEPEELRWLQAQEEDTTPEASLEGPCPEASQSQSQPLR Same 511445 chr15:82699633-82699875- 607 607 59 0 422 82699633 82711838 594 594;666;2562;3438;6176 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:82699633-82711838&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.670781893004 0.330762250454 15.2088259259 0.9608 3.92436419753 11.2844617284 0.978075144341 1.04169950755 908 242 242;908;1397;1646;2079 21.9463864198 0.5949 5.50245925926 16.4439271605 1.00741399006 1.00646714381 988 862 862;988;2701;2921;3420 0.0 0.0663576040177 chr11:64265310-64265502+ ENST00000261722.7,ENST00000535385.5 CDSintron,NCintron coding exon(s) AP3B2 alternative first exon 667 585825 chr8:10498609-10498689- NoOverlap chr8 10498609 10498689 - 14.3712184385 27 0.802235729282 1.67320370122 12.6980147373 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;10498608;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10498609-10498689-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A10498609-10498689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.99483044726 0.965779908041 1.02018554369 10356119 10356199 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;10356118;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10498609-10498689-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A10356119-10356199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KHLCGGSILHWWWVLTAAHCFRRTL*VSSSTSR Same 586762 chr8:10498609-10498689- 650 650 17 1 31 10496192 10498809 31 31;380;667;765;1871;8583 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:10496192-10498809&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.518518518519 0.367346938776 13.9285407407 0.9034 -0.55192962963 14.4804703704 0.965911197696 1.03607271803 997 61 61;238;682;997;2094;6527 18.7723555556 0.3592 -0.499844444444 19.2722 0.889513884799 1.02947970233 2153 24 24;1365;2041;2153;3654;11606 0.0613211554608 chr8:10529507-10529699+ 0.191468761351 chr8:10529507-10529699+ ENST00000523024.1,ENST00000521149.2 NC,NCintron protein-coding gene protein-coding gene ENSG00000253649 668 543142 chr20:32434565-32434819+ NoOverlap chr20 32434565 32434819 + 7.04313996119 85 0.955762838896 1.77956232148 5.26357763971 ENST00000306058.9,ENST00000375687.8,ENST00000613218.4,ENST00000620121.4 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;32434564;255;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A32434565-32434819%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A32434565-32434819&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.98226752319 0.965625632359 1.0253409063 31022368 31022622 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;31022367;255;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A32434565-32434819%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A31022368-31022622&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPAGVGLAPGPSQTLKPVLCRSEGREVTTAIERRPPLPSEGGVARVEVAAGPPMREVAEAAAVVMVVRPVATLSPGEARAPLESVRQIYSEHNYCRLIL* Same 544531 chr20:32434565-32434819+ 553 553 115 0 464 32434565 32434819 Best 668 668;72911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:32434565-32434819&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.662745098039 0.476430008623 5.08633176471 0.9695 0.704869411765 4.38146235294 0.766675751718 0.870155597507 1801 Best 1801 1801;73689 -5.40134352941 0.7334 -9.32369764706 3.92235411765 0.206224037274 0.662973103556 6071 Best 6071 6071;58338 0.0 0.168064541329 chr2:25743828-25744476- ENST00000306058.9 CDS under investigation The PhyloCSF signal for ASXL1 changes frame in the final exon and goes back to the original frame after ~250bp. This sequence conformation is conserved in mammals, and while this could conceivably indicate a programmed frameshift, it could instead be explained by an unknown splice variant that causes this exon to be translated in a different frame. 669 588819 chr9:35305528-35305569+ NoOverlap chr9 35305528 35305569 + 6.14638584001 14 0.963044828826 -9.4853642668 15.6317501068 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35305527;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35305528-35305569%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35305528-35305569&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.209614226619 0.965050926975 0.946293035277 35305525 35305566 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35305524;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35305528-35305569%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35305525-35305566&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARVRRLNKQTTIDDSR Same 589762 chr9:35305528-35305569+ 723 723 -54 0 5 35300167 35307879 5 5;669;1004;1082;1090;2464;3976;4603;5133;9301;65975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35300167-35307879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.380952380952 0.666666666667 4.34030714286 0.9968 -16.77685 21.1171571429 0.522111491283 0.946185851537 2989 565 565;1736;1846;2357;2445;2557;2989;3035;3218;3591;8325 0.461907142857 0.6096 -31.6961 32.1580071429 0.516511532156 1.02779547583 3466 420 420;802;1067;1389;1934;2365;2375;2403;2753;3466;5635 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron coding exon(s) UNC13B cassette exon 670 479226 chr10:122624752-122624832+ NoOverlap chr10 122624752 122624832 + 6.4702259258 27 0.684102077205 -9.07618912613 15.5464150519 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122624751;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122624752-122624832%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122624752-122624832&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.580505378208 0.964960551521 0.927700547075 124384268 124384348 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124384267;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122624752-122624832%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124384268-124384348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWAVAFPGNAWFDQGSGPIVLDDVCCSGNES*LWSCPHNGWLSHSCQHSEDAVSSVQMGLQDLGPLF Same 481131 chr10:122624752-122624832+ 450 450 220 7 465 122624536 122624832 Best 670 670;999;1583;8711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122624536-122624832&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.567901234568 0.153119092628 16.9305074074 0.8441 -6.97835925926 23.9088666667 0.948377975591 0.978247361615 1100 Best 1100 1100;1284;1868;1940 41.6942518519 0.9162 -18.5897037037 60.2839555556 0.989764295769 1.01066580637 1284 507 507;1148;1284;1573 0.436160526715 chr10:122588944-122589267+ 0.259335077371 chr10:122613974-122614297+ ENST00000330163.8 CDSintron pseudo-exon DMBT1 pseudo_exon 671 473244 chr1:92662719-92662868- NoOverlap chr1 92662719 92662868 - 7.07081800103 50 0.967176623178 1.55497197628 5.51584602475 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;92662718;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A92662719-92662868-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A92662719-92662868&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.993312197654 0.964708799493 1.02191572916 93128276 93128425 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;93128275;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A92662719-92662868-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A93128276-93128425&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LCPKGQVTRAQEAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWVR Same 475123 chr1:92662719-92662868- 654 654 17 0 466 92662719 92662868 Best 671 671 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:92662719-92662868&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.506666666667 0.104529616725 5.83387 1.0 -0.303426 6.137296 0.795806752916 0.980469383626 1686 Best 1686 1686 13.088262 0.9321 -0.93964 14.027902 0.8537797446 0.992185790891 2303 Best 2303 2303 0.0 0.191922233084 chr19:7858191-7858331+ ENST00000491940.5,ENST00000370331.5,ENST00000468580.5 NC,CDSintron,NCintron coding exon(s) EVI5 cassette exon 672 510852 chr16:20719247-20719390+ NoOverlap chr16 20719247 20719390 + 7.43450410276 48 0.570992599374 0.671508289253 6.76299581351 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20719246;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20719247-20719390%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20719247-20719390&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.815267663857 0.964577022414 1.05160198891 20730569 20730712 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20730568;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20719247-20719390%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20730569-20730712&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSDSIWNVSDTGWVKATFGSIFSSWLYGACVFMHQMAQFDIDTFLDVSHVLQLDR Same 512490 chr16:20719247-20719390+ 716 716 -44 0 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.0 15.4650270833 0.9655 -1.34993958333 16.8149666667 1.0144398745 0.946561760429 621 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 35.4720708333 0.7669 -3.2006625 38.6727333333 0.976741411835 0.956493068284 1482 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.843369296998 chr12:7318026-7318182+ 0.840963742516 chr12:7318026-7318182+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 673 499103 chr13:114200313-114200402+ NoOverlap chr13 114200313 114200402 + 6.88185329239 30 0.724397650111 -3.50551657677 10.3873698692 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;114200312;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A114200313-114200402%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A114200313-114200402&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.749967285928 0.963994574028 1.01679505401 114965788 114965877 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;114965787;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A114200313-114200402%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A114965788-114965877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSSLLLCPQLEEERLSVIERDNRLLLEKVASVMRTR Same 501109 chr13:114200313-114200402+ 652 652 21 0 467 114196396 114200402 Best 673 673;10112 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:114196396-114200402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.443349753695 8.50607666667 0.7365 -10.2178533333 18.72393 0.922542819946 0.930054957439 1222 Best 1222 1222;4747 10.8324966667 0.5501 -18.9082066667 29.7407033333 1.00616830469 0.999697361038 1009 Best 1009 1009;3679 0.0 0.151607188631 chr19:18264363-18267526- protein-coding gene protein-coding gene ENSG00000283361 674 588831 chr9:35353636-35353800+ NoOverlap chr9 35353636 35353800 + 5.9004364074 55 0.813359967262 -0.859201923284 6.75963833068 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35353635;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35353636-35353800%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35353636-35353800&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.896494962225 0.963819327518 1.05830812214 35353633 35353797 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35353632;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35353636-35353800%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35353633-35353797&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLGTVSSGGAQDCSLESPGSQGSESLLSVVSGGVGVSTQGEQTPQDPSTFSLASNNSLPSVALAPCLGSETCSRPGSPKQGRLSLEQVCTETVYLNKCINNFKNVLREKRLRQKKLLHELVQKANRLSVEDIHSGILSHYLTGSQLAK Same 589774 chr9:35353636-35353800+ 589 589 85 0 424 35341754 35353800 597 597;674;681;729;1148;1380;3195 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35341754-35353800&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.436363636364 0.254826254826 7.79403272727 1.0 -1.67456363636 9.46859636364 0.991568737095 1.07025685295 821 613 613;676;680;821;951;1589;9444 19.7303436364 0.7022 0.954812727273 18.7755309091 1.03471925559 1.03709894754 564 210 210;564;1088;1576;2310;2740;16707 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron not annotated potentially spurious 675 577132 chr7:2384592-2384675+ NoOverlap chr7 2384592 2384675 + 12.7324569917 28 0.755528125647 5.68554285169 7.04691414003 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;2384591;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A2384592-2384675%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A2384592-2384675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.998794509002 0.963722388732 1.00955812201 2424227 2424310 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;2424226;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A2384592-2384675%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A2424227-2424310&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQSSRPGDCLQVALRIHPLNDAELKEGAAVIAHKVGDQVR Same 578172 chr7:2384592-2384675+ 629 629 46 0 237 2384592 2388658 304 304;675 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:2384592-2388658&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.75 22.9544071429 0.9189 13.9214321429 9.032975 0.988163984947 0.966992125903 848 487 487;848 27.9174892857 0.4692 11.9087928571 16.0086964286 1.02046072066 0.954103840166 780 178 178;780 0.0 0.128384716676 chr17:74328425-74328505+ ENST00000443103.1 NC pseudogene unitary pseuodgene, KIF19 family member (ENSG00000230914) 676 481196 chr10:77140289-77140504- NoOverlap chr10 77140289 77140504 - 7.68379867532 72 0.94896217458 -0.655326301853 8.33912497717 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;77140288;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A77140289-77140504-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A77140289-77140504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.979538005873 0.962832207992 1.0266176519 78900047 78900262 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;78900046;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A77140289-77140504-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A78900047-78900262&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAESLAHLPPSTMIPSKILVYRHPSSRTGTELYRPGRRRKKSLGDLFHNGYRVKSGPAAPEKEEPPNFRQSLVSCCGVCASWGK Same 483110 chr10:77140289-77140504- 584 584 92 0 468 77140289 77140504 Best 676 676 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:77140289-77140504&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.587962962963 0.537313432836 10.6017097222 0.9976 -0.293643055556 10.8953527778 1.01020675606 1.04861556463 653 Best 653 653 28.9575152778 0.7501 2.87805277778 26.0794625 0.939926913633 1.03775628727 1887 Best 1887 1887 0.0 0.0 ENST00000286627.9 CDSintron coding exon(s) KCNMA1 alternative first exon 677 521545 chr17:42043062-42043379- NoOverlap chr17 42043062 42043379 - 6.86225097022 106 0.647140732807 2.56664342864 4.29560754158 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;42043061;318;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42043062-42043379-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A42043062-42043379&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.967527329144 0.962706665015 0.959475691192 40195080 40195397 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;40195079;318;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42043062-42043379-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A40195080-40195397&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARMVPPGKKPAGEASNSNKKCKRYFNEHWKEEFTWLDFDYERKLMFCLECRQALVRNKHGKAENAFTVGTDNFQRHALLRHVTSGAHRQALAVNQGQPPFEGQAEGGGACPGLATTPASR Same 522965 chr17:42043062-42043379- 452 452 225 0 202 42039741 42043379 246 246;490;677;1042;1254;1300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:42039741-42043379&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.594339622642 0.498544232923 12.1420650943 0.9219 2.13315377358 10.0089113208 1.03742865089 1.05241167437 393 211 211;393;721;1090;1261;1575 29.7177849057 0.6648 8.02592358491 21.6918613208 1.02202347314 1.01622582652 758 256 256;463;585;758;813;1544 0.0 0.0 ENST00000587304.1,ENST00000436535.3 NC,CDSintron protein-coding gene protein-coding gene ENSG00000267221 678 544674 chr20:16368157-16368210- NoOverlap chr20 16368157 16368210 - 8.28737238381 18 0.877840509312 -9.25763336817 17.545005752 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;16368156;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A16368157-16368210-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A16368157-16368210&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.631128575439 0.961425152597 0.97489496783 16348802 16348855 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;16348801;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A16368157-16368210-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A16348802-16348855&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSAFKQSLVQFPDQMLKLQECPLK Same 546068 chr20:16368157-16368210- 604 604 74 0 469 16367827 16368564 Best 678 678;707;5154 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:16367827-16368564&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.319526627219 7.51865555556 0.9818 -12.0183 19.5369555556 0.747264449424 0.956788207453 1882 807 807;1882;4874 7.91699444444 0.7847 -19.9920833333 27.9090777778 0.734076903392 1.06133210626 2696 737 737;2696;3248 0.0 0.0 ENST00000354981.6 CDSintron coding exon(s) KIF16B alternate final exon 679 561216 chr4:17874160-17874561- NoOverlap chr4 17874160 17874561 - 4.6152559749 134 0.907238697791 -1.74273657387 6.35799254877 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17874159;402;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17874160-17874561-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17874160-17874561&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.932209576408 0.961390442723 1.07268480145 17875783 17876184 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17875782;402;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17874160-17874561-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17875783-17876184&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VASPLETCLLELEVSPVKMLFQKKYDLNELCTWFMQTTETQSLSLVRKANARNPLEVINTRGIKLGTKYSDFNASPFRKHFKKFALSSPSKSAEKLHILHKVANSPLLNVKSNLAIARLKRTEFKRLHHERWKREGK Same 562207 chr4:17874160-17874561- 586 586 93 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.358208955224 0.0775462962963 7.09204029851 0.9978 -1.63165671642 8.72369701493 1.01642021987 1.05030717429 601 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 15.1360089552 0.8374 -5.35190447761 20.4879134328 1.02810335808 1.06330150384 646 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0811718332496 chr10:96981391-96985134+ ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 680 481959 chr10:102408898-102409158- NoOverlap chr10 102408898 102409158 - 9.32324831188 87 0.587017554014 6.34410917562 2.97913913626 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102408897;261;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102408898-102409158-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102408898-102409158&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.06903895747 0.961264473601 0.877931549988 104168655 104168915 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104168654;261;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102408898-102409158-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104168655-104168915&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAGRPGGPGAEGGRGHGRGPRRAGRASMIGVNSIHSSAGRLRSRSLCSVRYGRTHRGAETLCYGWPQRSRSLKPVLYTDLVVSRLQSRKKKK Same 483876 chr10:102408898-102409158- 583 583 97 0 470 102395633 102432561 Best 680 680;6932;11855;22696;25308;48284;57642;69925;70124;70146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102395633-102432561&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.754789272031 1.0228960396 6.74692873563 0.823 4.27612988506 2.47079885057 0.661670461623 0.728854028815 2246 Best 2246 2246;9900;30034;37715;42789;48132;52915;53220;64824;73530 19.6385655172 0.7394 4.00326666667 15.6352988506 1.02418158 0.997999523124 715 Best 715 715;21243;24877;42637;43017;45832;46589;56731;57300;70842 0.0 0.0505472500968 chr1:179846071-179846828- ENST00000461698.5,ENST00000020673.5,ENST00000488194.1 NC,CDSintron,NCintron coding exon(s) PSD alternative first exon 681 588828 chr9:35352175-35352444+ NoOverlap chr9 35352175 35352444 + 7.46480111248 90 0.915495536736 -1.87508777049 9.33988888297 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35352174;270;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35352175-35352444%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35352175-35352444&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01784445271 0.960733993121 1.01438897866 35352172 35352441 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35352171;270;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35352175-35352444%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35352172-35352441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQEPHVDRPSEEAILYLYGLPEQDGENTMELVESFLAKHLCVNGMQCNRYIKKAYRAGTSPSPRPTVVKLAHLEHRDFILQKSILLQNVGVRIATREEPSCPQGNK Same 589771 chr9:35352175-35352444+ 549 549 132 0 424 35341754 35353800 597 597;674;681;729;1148;1380;3195 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35341754-35353800&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.474074074074 0.1318359375 10.0585722222 0.9998 -2.79258666667 12.8511588889 1.00580287688 1.03229173694 680 613 613;676;680;821;951;1589;9444 23.0257 0.7449 -1.43763222222 24.4633322222 1.00133212146 1.05546331807 1088 210 210;564;1088;1576;2310;2740;16707 0.0 0.0340280540157 chr15:54012904-54015886+ ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron not annotated potentially spurious 682 570127 chr5:177632519-177632680- NoOverlap chr5 177632519 177632680 - 5.32881483546 54 0.624736004792 -2.28557772603 7.61439256149 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;177632518;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177632519-177632680-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A177632519-177632680&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.644971614517 0.960392938158 1.05785801275 177059520 177059681 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;177059519;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177632519-177632680-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A177059520-177059681&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IAVDCVIDLTRAEGENRPIATLDLTLEPVTPSQREPTSLQTCASLSGKAVMEGQVDRSSQPTAR Same 571145 chr5:177632519-177632680- 730 730 -48 0 413 177631373 177632741 581 581;682;928;2345;9048;9086 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:177631373-177632741&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.512345679012 0.0941860465116 2.52791481481 0.6431 -4.41946111111 6.94737592593 0.403970436111 1.02512203897 3960 2235 2235;3960;4414;7404;13259;17105 0.194492592593 0.2697 -8.7538 8.94829259259 0.227280256578 0.876473696929 5610 2652 2652;4964;5610;7150;10642;13371 0.995764718474 chr5:176289654-176290955+ 1.02321202223 chr5:176289654-176290955+ ENST00000515045.1,ENST00000500444.2 NC,NCintron pseudogene extension SUMO interacting motifs containing 1 (SIMC1) pseudogene significantly rebuilt (ENSG00000246596) 683 530321 chr19:15440094-15440267- NoOverlap chr19 15440094 15440267 - 15.701513768 58 0.871201753209 3.3294877857 12.3720259823 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15440093;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15440094-15440267-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15440094-15440267&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.946978250081 0.960378430598 0.945269872827 15550905 15551078 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15550904;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15440094-15440267-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15550905-15551078&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EDLEDLEGLAQPSEWGLPTSASEVATQTWTVNSEASVERLQPLLPPIRTGPYLCELLEEVAEGVASPDEDEDEEPAVFPCIECSIYFK Same 531784 chr19:15440094-15440267- 639 639 44 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.689655172414 0.535384615385 26.2942775862 0.9721 7.16361724138 19.1306603448 0.99600373703 0.947259064583 777 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 32.4398431034 0.5648 6.00316034483 26.4366827586 0.948270165833 1.03098058157 1831 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.0 ENST00000263381.11 CDSintron coding exon(s) WIZ 2 cassette exons 684 549563 chr22:21661475-21661561- NoOverlap chr22 21661475 21661561 - 6.17989656843 29 0.822219766747 -3.86644836541 10.0463449338 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21661474;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21661475-21661561-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21661475-21661561&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.748662931102 0.96004324577 1.02964072037 22015764 22015850 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;22015763;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21661475-21661561-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A22015764-22015850&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVDLTPLVLNPGGFHFSYVAGNSLPKLHCPGSPW Same 550920 chr22:21661475-21661561- 625 625 59 0 471 21661475 21661561 Best 684 684 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21661475-21661561&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586206896552 0.0 8.09198275862 0.9696 -8.24080344828 16.3327862069 0.968473817265 0.984046209628 975 Best 975 975 10.2067275862 0.3463 -7.93802068966 18.1447482759 0.738910944515 1.04626774712 2677 Best 2677 2677 0.0 0.0 ENST00000498589.1 AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 685 531039 chr19:37831252-37831518- NoOverlap chr19 37831252 37831518 - 4.41941686109 89 0.795989620436 -5.25256856975 9.67198543083 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37831251;267;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37831252-37831518-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37831252-37831518&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.782918344573 0.960008729413 1.01228324235 38321892 38322158 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38321891;267;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37831252-37831518-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38321892-38322158&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLGTVPCHFSTSCLFYDPEAELLLSGTLGAVVTWFILPNGMGIEMAQIVPMADHELVQGFSLNGPQGSLLALCEDTVRVFIHRGQGQLEEVKFTPVASGSSITCSFTCVSQGNFYAGNRAGEIHAWGLDQGNFLHSFQAHSSSVICIHSRPEIHTLLTAGSEGIVR Same 532506 chr19:37831252-37831518- 551 551 134 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.535580524345 0.208920187793 5.49956853933 0.9211 -8.38699775281 13.8865662921 0.939543257925 1.01680029634 1143 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 11.172294382 0.4681 -10.0453426966 21.2176370787 0.909410816491 1.09188670636 2058 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.174788217748 chr19:37892578-37895456- 0.489234341525 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 686 549345 chr22:50703859-50703939+ NoOverlap chr22 50703859 50703939 + 20.3901369903 27 0.828571670778 8.93617029102 11.4539666993 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50703858;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50703859-50703939%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50703859-50703939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.973799557877 0.959782977124 1.00614355803 51142287 51142367 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51142286;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50703859-50703939%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51142287-51142367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVEAGQLEATTVHQLPILPSETREDRTKRLFRHYTVGSYDSLTSHRYVQGPWLAGACMWDVGQDLQCR None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.617283950617 0.913043478261 28.7304962963 0.9736 10.1273444444 18.6031518519 1.03448012011 1.03849179007 425 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 50.3285666667 0.8179 14.0472925926 36.2812740741 0.996397792963 1.03562605188 1166 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.264965044139 chr19:50697589-50697664- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 687 549351 chr22:50705900-50706157+ NoOverlap chr22 50705900 50706157 + 14.5823070048 86 0.825383028064 7.01765353839 7.56465346643 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50705899;258;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50705900-50706157%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50705900-50706157&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01946706222 0.959404976533 1.02899086397 51144328 51144585 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51144327;258;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50705900-50706157%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51144328-51144585&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMKKFASSRNLNKILAQCDSSSREYEEIQAVERKWHLHLATPRRLLLDRRSKASLFFAAPPPPKRAPSTTLTLRSKSMTAELEELGEWR Different 689517 chr22:50705900-50706070+ 466 466 221 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.635658914729 0.581081081081 17.1424348837 0.9411 7.45401046512 9.6884244186 0.990653288845 1.03946612945 829 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 32.831427907 0.9071 7.57699767442 25.2544302326 1.02332116841 1.03957694208 734 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.0626268268632 chr11:70502206-70502286- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 688 479239 chr10:122774748-122774930+ NoOverlap chr10 122774748 122774930 + 11.3823999741 61 0.782509908984 2.02525081082 9.35714916323 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122774747;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122774748-122774930%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122774748-122774930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.971104590092 0.959400778403 0.994110883439 124534264 124534446 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124534263;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122774748-122774930%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124534264-124534446&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GIHGVCFPSLDCTNEYFEILDGPPSSVKSLGRTCSGFQHTYISSSSSMTLVYFRSFNNLG*NFIAYYYSAPK Same 481144 chr10:122774748-122774930+ 623 623 65 8 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.453551912568 0.350574712644 16.4559786885 0.9265 3.33939344262 13.1165852459 0.976269955025 1.00516439407 925 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 18.2822901639 0.3848 0.42548852459 17.8568016393 1.05918534011 1.03334152379 234 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.0 0.0 ENST00000439464.6 NC pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 689 561018 chr4:6008014-6008238- NoOverlap chr4 6008014 6008238 - 5.79101325293 75 0.503958698914 -0.767485292355 6.55849854529 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;6008013;225;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6008014-6008238-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A6008014-6008238&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.704128395636 0.958807333479 1.0578738512 6009741 6009965 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;6009740;225;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6008014-6008238-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A6009741-6009965&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAGLLLAQWDTAAPGSQGATEAAAELRALQARAERSEREREEAARSLQEHRATERQLRGQLEELRCCIYGLKLSEIGLQGQVEDLAQQNQCLREELGAQAPIGHCSLVSGGNSG Same 562008 chr4:6008014-6008238- 695 695 -6 0 128 6008014 6018431 155 155;465;689;1797;5236 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:6008014-6018431&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.715555555556 0.669014084507 9.612024 0.7252 -2.89542 12.507444 1.05032338865 1.02669181357 256 Best 256 256;423;1173;1484;2527 7.030244 0.5168 -10.3173533333 17.3475973333 0.854354362576 1.07042577105 2302 2 2;2247;2302;2304;3145 0.0 0.194172357965 chr3:99848274-99850955- coding exon(s) C4orf50 5' exons 690 576301 chr6:130882577-130882834- NoOverlap chr6 130882577 130882834 - 13.6562698015 86 0.935277616612 4.32635924299 9.32991055849 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;130882576;258;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A130882577-130882834-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A130882577-130882834&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01552386014 0.958684183115 1.02289519302 131203717 131203974 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;131203716;258;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A130882577-130882834-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A131203717-131203974&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AADDSDSEFGYFSFSFSKCFPSGFPSLLDEDGYLAFPSLPKVWVSFLPAGVQHYVPITSPSFIPSLILIFGLLLSASQSVPFSLAFSLPLALSLCYLEAKAASFNVSYDCDLNDK Same 577338 chr6:130882577-130882834- 628 628 62 0 472 130872424 130883107 Best 690 690;716;8163 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:130872424-130883107&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.523255813953 0.206730769231 19.0383174419 0.9716 6.47408372093 12.5642337209 0.973116359183 1.03160371117 944 Best 944 944;965;3619 30.6900139535 0.9001 4.33885813953 26.351155814 1.02701013888 1.04456737489 663 Best 663 663;2734;5597 0.0 0.216509662259 chr18:5415818-5416378- ENST00000530757.5,ENST00000337057.7 UTR5,CDSintron coding exon(s) EPB41L2 alternative final exon 691 549336 chr22:50679019-50679189+ NoOverlap chr22 50679019 50679189 + 15.1166158434 57 0.776608454837 5.05723680687 10.0593790365 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50679018;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50679019-50679189%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50679019-50679189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.952100297974 0.958117889701 0.983962359201 51117447 51117617 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51117446;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50679019-50679189%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51117447-51117617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSCLVMGLGAAGPGVDTEAAHPQTLLDLGASPDYKDSRGLTPLYHSALGGGDALCCELLLHDHAQLGITDENGWQEIHQVCR None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.649122807018 0.388888888889 25.0963421053 0.9988 10.5498596491 14.5464824561 0.952556483332 0.994326251574 1078 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 65.5700894737 0.9901 18.1714807018 47.3986087719 0.963844621371 0.983175262475 1649 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.357606308605 chr19:50711947-50712114- ENST00000262795.5 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 692 556151 chr3:70196929-70197186- NoOverlap chr3 70196929 70197186 - 14.6475698594 86 0.861129416023 5.9488081589 8.69876170054 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;70196928;258;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A70196929-70197186-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A70196929-70197186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02757020385 0.957956966 1.02367631329 70246080 70246337 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;70246079;258;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A70196929-70197186-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A70246080-70246337&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TEECASLILACLFCQFWDCLLMLPGTCETVCTKMCCPSRRYHHTSDENHSRNDCSCNCDMDCSLFESCHETSECLELAMEISEICYR Same 557108 chr3:70196929-70197186- 647 647 45 0 473 70196929 70206785 Best 692 692;11580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:70196929-70206785&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.531007751938 0.552226027397 22.02815 0.9998 9.18601511628 12.8421348837 0.994106524847 1.02118095232 795 Best 795 795;3359 42.4013418605 0.9319 11.9114011628 30.4899406977 1.00804829775 1.02156848034 976 Best 976 976;3553 0.0 0.0 ENST00000567252.1 NC protein-coding gene protein-coding gene ENSG00000242120 693 630415 chr12:51196844-51196930- Extension chr12 51196844 51196930 - 11.403486222 29 0.935958937446 6.2292655727 5.17422064933 chr12:51196799-51196930- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;51196843;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51196844-51196930-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A51196844-51196930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02564565752 0.957806529423 0.913308334793 51590627 51590713 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;51590626;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51196844-51196930-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A51590627-51590713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFLHPQISAASLGGQTQILGSLTTAPVITSAIPSMPGISSQILTNAQGQASGQR Same 631080 chr12:51196844-51196930- 645 645 48 0 215 51196844 51218124 265 265;283;557;693;1092;2383;53800;58134;68865;69357 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:51196844-51218124&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.609195402299 0.263636363636 13.4330896552 1.0 6.28052068966 7.15256896552 0.985855339 0.936171823897 866 69 69;438;866;867;1487;2229;24410;46155;50649;71456 33.5981586207 0.8879 7.58476206897 26.0133965517 1.0251631577 1.05338339722 697 172 172;288;697;1392;1579;3071;9854;33434;34785;72898 0.0 0.0 ENST00000333640.10,ENST00000552305.1 Extension5p,NCintron coding exon(s) POU6F1 first coding exons 694 499777 chr13:51110832-51111002- NoOverlap chr13 51110832 51111002 - 12.5640982154 57 0.813777022858 2.824844032 9.73925418341 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51110831;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51110832-51111002-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51110832-51111002&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.952714356707 0.957607291608 0.987850470878 51684968 51685138 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;51684967;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51110832-51111002-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A51684968-51685138&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STSSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGK Same 501784 chr13:51110832-51111002- 626 626 68 0 148 51110832 51111907 177 177;694;1207;6306 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51110832-51111907&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.590643274854 0.470518867925 22.1872087719 0.9798 4.51435614035 17.6728526316 0.947448896436 0.951713838363 1104 453 453;1104;1293;4715 40.4165122807 0.8443 5.51445087719 34.9020614035 0.952303446416 0.98749047558 1803 1636 1636;1803;1976;7599 0.0 0.0 ENST00000563710.5,ENST00000433280.6 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 695 510864 chr16:20732907-20732984+ NoOverlap chr16 20732907 20732984 + 10.0547000582 26 0.77983696322 -3.247453881 13.3021539392 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20732906;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20732907-20732984%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20732907-20732984&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.93575200928 0.957585399313 0.970667524937 20744229 20744306 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20744228;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20732907-20732984%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20744229-20744306&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VEFVQELPKTIIGRIKHVLRDQE*GR Same 512502 chr16:20732907-20732984+ 662 662 33 2 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.397435897436 0.666666666667 11.0749384615 0.9821 -8.14351923077 19.2184576923 1.00394599256 0.947091288466 703 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 23.4521307692 0.7285 -13.3694615385 36.8215923077 1.0561548179 0.946910557186 255 Best 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.890868458416 chr12:7328287-7328373+ 0.856615351505 chr12:7328287-7328373+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 696 493934 chr12:132125854-132125991+ NoOverlap chr12 132125854 132125991 + 10.2894131638 46 0.476747240937 4.66818692114 5.6212262427 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132125853;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132125854-132125991%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132125854-132125991&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.896224724176 0.957554293447 1.0171336885 132610399 132610536 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132610398;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132125854-132125991%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132610399-132610536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TRVSTSHLQGPRLTSALTYQMAQVAVATPPVVSVLAVVVLSARVTVLPSTQR Same 495925 chr12:132125854-132125991+ 754 754 -58 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.623188405797 0.373983739837 23.9421282609 0.8196 9.98788695652 13.9542413043 1.04195018667 1.02720293598 341 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 39.5591456522 0.5348 16.9426456522 22.6165 1.00334261246 1.03751912675 1060 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.95741222585 chr12:132066774-132066969+ 0.910550202655 chr12:132066774-132066969+ ENST00000332441.7 NC redundant PhyloCSF signals are accounted for elsewhere on the list 697 569712 chr5:160684840-160685103- NoOverlap chr5 160684840 160685103 - 13.2018976336 88 0.898298619059 1.47082950141 11.7310681322 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;160684839;264;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A160684840-160685103-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A160684840-160685103&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02436516156 0.957150140477 1.02092422048 160111847 160112110 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;160111846;264;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A160684840-160685103-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A160111847-160112110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNQIKTSKYTVLSFVPKNIFEQLHRFANLYFVGIAVLNFIPVVNAFQPEVSMIPICVILAVTAIKDAWEDLRRYKSDKVINNRECLIYSR Same 570730 chr5:160684840-160685103- 637 637 60 0 357 160684840 160685226 495 495;697 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:160684840-160685226&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.473484848485 0.542372881356 18.7933045455 0.9616 0.484260227273 18.3090443182 0.984844349862 1.01859438895 872 481 481;872 49.1229056818 0.9875 1.14161931818 47.9812863636 0.972313662432 1.01638056009 1547 1455 1455;1547 0.0 0.217438312386 chr15:25862648-25863096- ENST00000326831.7,ENST00000327245.9,ENST00000517802.5 NC,CDSintron,NCintron coding exon(s) ATP10B alternative first exon 698 722201 chr8:11364806-11364988+ Extension chr8 11364806 11364988 + 16.8142033278 61 0.890952775829 5.41986724368 11.3943360841 chr8:11364719-11364988+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;11364805;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A11364806-11364988%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A11364806-11364988&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.959726900891 0.956960305852 0.955657290489 11222315 11222497 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;11222314;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A11364806-11364988%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A11222315-11222497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPMMYIDDCLRATLEVMEAPAESLSMRTYNVSAMSFTPEELAQEVLKHVPEFQITYNVDAVRQAIGSYPVAK Same 722802 chr8:11364806-11364988+ 655 655 43 0 281 11362895 11365716 367 367;698;800 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:11362895-11365716&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.584699453552 0.516949152542 24.0814245902 0.9186 7.27798032787 16.8034442623 0.979012749319 0.959809028507 906 452 452;906;950 52.8941590164 0.9109 14.6635311475 38.2306278689 0.995566248891 0.966522005375 1182 Best 1182 1182;1297;1732 0.0 0.0 ENST00000525246.5 NC pseudogene extension TDH pseudogene extended by 2 exons (ENSG00000154316) 699 517301 chr17:38925691-38925768+ NoOverlap chr17 38925691 38925768 + 11.9930538592 26 0.919401846342 3.00201921165 8.99103464759 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;38925690;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A38925691-38925768%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A38925691-38925768&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.984824346963 0.956844438372 1.04983180556 37081944 37082021 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;37081943;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A38925691-38925768%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A37081944-37082021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESTMLDIFILMFFAIIGLVILSYIIYLL Same 518697 chr17:38925691-38925768+ 624 624 75 0 474 38925691 38925768 Best 699 699 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:38925691-38925768&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.410256410256 0.0 14.0022538462 0.9821 0.903334615385 13.0989192308 1.01089586625 1.05273957477 647 Best 647 647 29.5501307692 0.7837 2.78888076923 26.76125 1.04991648243 1.0542190558 328 Best 328 328 0.0 0.0 ENST00000583195.1 NC protein-coding gene protein-coding gene ENSG00000263874 700 558275 chr4:2596075-2596335+ NoOverlap chr4 2596075 2596335 + 13.4817160594 87 0.879820645106 4.27957347146 9.20214258794 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;2596074;261;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A2596075-2596335%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A2596075-2596335&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02073186051 0.95662255766 1.02660396926 2597802 2598062 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;2597801;261;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A2596075-2596335%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A2597802-2598062&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NFFFLFQTPFSFGMNHRTPPYPAGDYCLLCRSERKDSSFLESGIKTASKLALSMAPKGNSVLHLPLWVCPDCRRTVEKEERHGGLDQPVVSGCQHR Same 559249 chr4:2596075-2596335+ 646 646 54 0 475 2596075 2596335 Best 700 700 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:2596075-2596335&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.540229885057 0.36983805668 16.306383908 0.9253 5.31084022989 10.9955436782 0.986305265355 1.04580914546 862 Best 862 862 35.7714988506 0.8068 10.7023298851 25.0691689655 0.988245774575 1.03248614702 1301 Best 1301 1301 0.0 0.0 ENST00000508235.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 701 534733 chr2:110343869-110343994+ NoOverlap chr2 110343869 110343994 + 8.20529526366 42 0.657098533317 2.0585547565 6.14674050716 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110343868;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110343869-110343994%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110343869-110343994&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.943662903199 0.956346843919 1.03256920014 111101446 111101571 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111101445;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110343869-110343994%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111101446-111101571&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AWPWTPWPTTHPSPLVSTPGWFCVSVAWTARPFNLDNYTSTNCLCPATATGEKCPAGSYCPEGSPEPMPCPPGSFCGTSGK Same 536085 chr2:110343869-110343994+ 679 679 22 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.603174603175 0.178977272727 21.6098142857 0.7785 11.6966404762 9.91317380952 1.05677390868 1.04163409198 184 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 50.124302381 0.8609 23.7137380952 26.4105642857 0.960228136189 1.04506781614 1692 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 702 577274 chr7:7877341-7877535+ NoOverlap chr7 7877341 7877535 + 12.9689061334 65 0.974648426267 5.43032761422 7.53857851923 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;7877340;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A7877341-7877535%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A7877341-7877535&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.935218383471 0.956303539078 1.02869004409 7916972 7917166 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;7916971;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A7877341-7877535%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A7916972-7917166&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGQTLENSSLMAELLSDVPFTLAPHVLAVQGTITDLPDHLLSYDGSENLSRFWYDFTLENSVLCDS Same 578314 chr7:7877341-7877535+ 627 627 75 0 476 7877341 7877535 Best 702 702 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:7877341-7877535&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.517948717949 0.541666666667 17.1146876923 0.9995 4.28181692308 12.8328707692 0.931071094233 1.0099122494 1185 Best 1185 1185 32.1856061538 0.7588 4.20912615385 27.97648 0.92102924476 1.02611771971 2007 Best 2007 2007 0.0 0.0 ENST00000406829.2,ENST00000468567.5 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 703 560793 chr4:574887-575498- NoOverlap chr4 574887 575498 - 6.34242744152 204 0.398868887602 2.47175981358 3.87066762794 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;574886;612;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A574887-575498-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A574887-575498&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.921347622074 0.955950605303 0.951916719732 568676 569287 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;568675;612;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A574887-575498-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A568676-569287&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGSSPGSAPGSTPGSAPGSAPGSAPGSAPGAPRARSTLDSATSAKCRQLKDYQRGLVLSTVFNSLECLLGLLSLLLVKNYKSSQARRGRRGRRRGGRALARPRGGSGLRAQPPASRARRGRRGRRGRRLQQRPSEASILSPEESDLAAPGDCAGFAAHHAVSYINVGVLHALDEAGAEVRCGGHPSVELPGYAPSDPDLNASYPYCCRPPCETPRPWETHRAC*SRGPDPHPADR Same 561781 chr4:574887-575498- 794 794 -91 6 477 574887 576356 Best 703 703;6245;31841;46311;49193;54444;54931;56343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:574887-576356&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.774509803922 0.971809877248 9.03323529412 0.5793 3.15463480392 5.8786004902 0.906841651727 0.964783078277 1278 Best 1278 1278;5393;22990;30652;31516;37018;38104;57044 8.59463823529 0.5923 -5.45345343137 14.0480916667 0.949170133519 0.95760992266 1826 Best 1826 1826;3252;19289;35804;46734;55036;61815;71601 0.0 0.0315438443207 chr12:109808296-109808468- protein-coding gene protein-coding gene ENSG00000273238 704 579707 chr7:142791723-142791800+ NoOverlap chr7 142791723 142791800 + 14.0917537167 26 0.923796444648 4.78574790478 9.30600581187 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142791722;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142791723-142791800%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142791723-142791800&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.984880544544 0.955762479964 1.04125442841 142498754 142498831 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142498753;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142791723-142791800%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142498754-142498831&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGK None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.576923076923 0.156 19.4573615385 0.9773 5.42319615385 14.0341653846 1.03131833524 1.0455351207 463 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 28.0977576923 0.5975 3.47259615385 24.6251615385 1.06325831862 1.05219124921 203 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.0 ENST00000610416.2,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 705 497650 chr12:130424352-130424528- NoOverlap chr12 130424352 130424528 - 12.4246338876 59 0.799299119503 3.19441195161 9.23022193601 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;130424351;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A130424352-130424528-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A130424352-130424528&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.950336472716 0.955719725357 0.999662769202 130908897 130909073 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;130908896;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A130424352-130424528-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A130908897-130909073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SATRSPDSGLDCGSEEDESRFGFGNTVAACSPGPGHCPCRRGPRPLLARRRTLTRQSSVEEDFGEQVGPGGLLR Same 499663 chr12:130424352-130424528- 632 632 73 0 478 130414095 130424786 Best 705 705;1088;2060;14312;67443 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:130414095-130424786&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.723163841808 0.797297297297 22.7972915254 0.9234 7.18144067797 15.6158508475 0.967748434663 0.973192609614 981 Best 981 981;1927;2532;4152;47833 53.7039135593 0.9329 18.4123474576 35.2915661017 0.982829811769 0.982458315571 1381 Best 1381 1381;1440;1513;3885;39756 0.0 0.126682231542 chr17:58308541-58309380- ENST00000261655.8 CDSintron coding exon(s) RIMBP2 3 cassette exons 706 511101 chr16:29116124-29116327+ NoOverlap chr16 29116124 29116327 + 10.1809221042 68 0.329633469318 4.5646588066 5.61626329755 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;29116123;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A29116124-29116327%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A29116124-29116327&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.849352247255 0.95562855403 1.03053749875 29127445 29127648 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;29127444;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A29116124-29116327%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A29127445-29127648&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPFLKPVFSHFQSFLYSINQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLRTTQMCNKVRW Same 512743 chr16:29116124-29116327+ 881 881 -175 0 479 29113049 29116327 Best 706 706;3723 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:29113049-29116327&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.509803921569 0.304591265398 17.0129088235 0.5427 7.61259852941 9.40031029412 1.14616813073 1.03132195726 1 Best 1 1;1753 44.8286044118 0.7549 15.0980882353 29.7305161765 0.947262918806 1.00330827928 1839 63 63;1839 0.971276887724 chr16:87984060-87984259+ 0.986192631206 chr16:87984060-87984259+ ENST00000564580.5 NC pseudogene BTG3 associated nuclear protein (BANP) pseudogene (ENSG00000284649) 707 684101 chr20:16367827-16368075- Extension chr20 16367827 16368075 - 6.69574935492 83 0.857331270608 -2.75952411398 9.4552734689 chr20:16367821-16368075- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;16367826;249;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A16367827-16368075-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A16367827-16368075&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.985825640955 0.955510100022 1.00363463404 16348472 16348720 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;16348471;249;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A16367827-16368075-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A16348472-16348720&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GIYWLAVAACTAPDPQPACLLLLQSTLYALVLSDNLGSMSIFHALPLSGLQEIQIGFGGQSVRFLSSAEGLLLTVFSYNKYLSQQLCR Same 684689 chr20:16367827-16368075- 582 582 125 0 469 16367827 16368564 678 678;707;5154 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:16367827-16368564&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.477911646586 0.214408725603 8.37859759036 0.9893 -4.56171807229 12.9403156627 0.992676085604 1.02698490202 807 Best 807 807;1882;4874 14.1142542169 0.7966 -12.2430590361 26.357313253 1.02315094712 1.05986086372 737 Best 737 737;2696;3248 0.0 0.0106373483227 chr1:9128645-9129027- ENST00000408042.5,ENST00000354981.6 ExtensionMid,CDSintron coding exon(s) KIF16B alternate final exon 708 569890 chr5:172356695-172356775- NoOverlap chr5 172356695 172356775 - 11.9210776946 27 0.969301673689 4.11551482148 7.80556287313 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;172356694;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A172356695-172356775-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A172356695-172356775&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.987418503055 0.955458418316 1.03540626249 171783699 171783779 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;171783698;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A172356695-172356775-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A171783699-171783779&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNALLDGDMCLVPPLPVHIVVLSSHLCPLPFLPHAAYPVSWRYWSLPRPVGRRRTLGDLYAISWR Same 570908 chr5:172356695-172356775- 640 640 68 0 480 172356695 172356775 Best 708 708 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:172356695-172356775&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.675 12.6633481481 1.0 2.10694074074 10.5564074074 0.999443808171 1.04699601964 743 Best 743 743 31.3391518519 0.9219 11.3429407407 19.9962111111 1.04021744876 1.01168246821 478 Best 478 478 0.0 0.0 ENST00000311601.5 CDSintron coding exon(s) SH3PXD2B first coding exon 709 549344 chr22:50698689-50698802+ NoOverlap chr22 50698689 50698802 + 9.37259211038 38 0.642603189136 3.35378945986 6.01880265052 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50698688;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50698689-50698802%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50698689-50698802&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.971841394543 0.955441902055 1.01849325381 51137117 51137230 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51137116;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50698689-50698802%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51137117-51137230&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPVWLLPPVLSIGEGGFWEGTVKGRTGWFPADCVEEVQMRQHDTRPGE None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.649122807018 0.718676122931 20.6227684211 0.9819 12.7739789474 7.84878947368 1.05322735439 0.986497894048 218 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 56.2822394737 0.9628 29.94535 26.3368894737 0.977230233934 1.04562744294 1468 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.201106669639 chr19:50697843-50697956- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 710 644695 chr15:98485898-98485978- Extension chr15 98485898 98485978 - 13.4270185784 27 0.756298161288 0.759414807928 12.6676037705 chr15:98485889-98485978- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;98485897;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A98485898-98485978-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A98485898-98485978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.985410750818 0.955185481382 1.01185185791 99029127 99029207 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;99029126;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A98485898-98485978-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A99029127-99029207&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSSLCTLSVALCCEAAPLLASLLCAHHPLLAFPLVVAVYIKESWCSTEDALRTSDPAREGLMK Same 645327 chr15:98485898-98485978- 690 690 20 0 481 98485898 98485978 Best 710 710 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:98485898-98485978&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.220108695652 25.2969814815 0.9562 1.7878962963 23.5090851852 1.02009462279 0.989047303342 575 Best 575 575 33.5858444444 0.6276 -1.45416666667 35.0400111111 1.03160193079 1.01548860755 601 Best 601 601 0.0 0.0 ENST00000558256.5 Extension5p redundant PhyloCSF signals are accounted for elsewhere on the list 711 477981 chr10:80643993-80644070+ NoOverlap chr10 80643993 80644070 + 13.9807422579 26 0.819699397269 5.51451152105 8.4662307369 ENST00000313455.5,ENST00000339284.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;80643992;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A80643993-80644070%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A80643993-80644070&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.982339419805 0.953230387812 1.02973456572 82403749 82403826 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;82403748;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A80643993-80644070%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A82403749-82403826&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEIITVSGGELLQEPCGQRDSPPDYHLLFE Same 479875 chr10:80643993-80644070+ 668 668 43 0 482 80634284 80644070 Best 711 711;801 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:80634284-80644070&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.512820512821 0.195488721805 19.2263884615 0.9844 6.20493846154 13.02145 1.03513099846 1.04821146838 417 Best 417 417;1113 33.5472846154 0.7126 9.77476153846 23.7725230769 1.05174868549 1.04210456929 303 Best 303 303;1515 0.0 0.179851567349 chr8:19394550-19394642+ ENST00000313455.5,ENST00000372150.7 CDS,NC coding exon(s) SH2D4B cassette exon 712 494110 chr12:3323318-3323512- NoOverlap chr12 3323318 3323512 - 7.20660766547 65 0.598934685517 1.75819079784 5.44841686762 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3323317;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3323318-3323512-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3323318-3323512&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.924286576204 0.952655677233 1.03136246366 3432484 3432678 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3432483;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3323318-3323512-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3432484-3432678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPLLQPGGLLQVRGAAVLAMGIWTLVERSSYLSILASSTFTASACILI*AGTLVMVTGFLGNSTIS*EQKGCLSMLCR Same 496105 chr12:3323318-3323512- 704 704 8 27 483 3323318 3323512 Best 712 712 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3323318-3323512&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.635897435897 0.256039915966 13.4461430769 0.9185 1.5943 11.8518430769 1.00430197927 1.02647252649 698 Best 698 698 42.97216 0.928 11.3212769231 31.6508830769 0.969803284283 1.00114052481 1578 Best 1578 1578 0.85511689732 chr12:30963826-30964017+ 0.848282746331 chr12:30963826-30964017+ ENST00000432994.2 AntiNC redundant PhyloCSF signals are accounted for elsewhere on the list 713 564459 chr5:75640608-75640694+ NoOverlap chr5 75640608 75640694 + 6.59194152931 29 0.852808843919 -2.85430684994 9.44624837925 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;75640607;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A75640608-75640694%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A75640608-75640694&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.817976509887 0.952601103956 1.04468673277 74936433 74936519 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;74936432;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A75640608-75640694%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A74936433-74936519&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQLNLTYFSFCWNGETPFFLSVEGGHEECSKVLLTAGSDTNIPNK Same 565447 chr5:75640608-75640694+ 657 657 56 0 484 75640608 75640694 Best 713 713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:75640608-75640694&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.471264367816 0.0 6.71053103448 0.8626 -4.07984827586 10.7903793103 0.718426377417 1.07144867066 2015 Best 2015 2015 11.0934655172 0.4837 -6.44612068966 17.5395862069 0.841309216361 1.03422883272 2346 Best 2346 2346 0.0 0.0 ENST00000601380.2,ENST00000504514.6 CDSintron,NCintron pseudo-exon ANKDD1B pseudo-exon 714 561222 chr4:17876035-17876130- NoOverlap chr4 17876035 17876130 - 6.44861555472 32 0.980193789578 -2.65752500622 9.10614056094 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17876034;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17876035-17876130-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17876035-17876130&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.830258951936 0.952465767442 1.04652592334 17877658 17877753 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17877657;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17876035-17876130-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17877658-17877753&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YEGTESSSVSNYSSPIKLMFLSEVKSSEGVKYTLTSVGTSHSNVVLPSEKPTTHHVTEEK Same 562213 chr4:17876035-17876130- 807 807 -93 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.354166666667 0.0 9.309609375 1.0 -2.276896875 11.58650625 0.987222123763 1.06435753717 854 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 26.37828125 0.9179 -5.371584375 31.749865625 1.00792484588 1.00726648936 980 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 715 464266 chr1:29069160-29069291+ NoOverlap chr1 29069160 29069291 + 6.02759088034 44 0.941693890149 -0.985713588921 7.01330446926 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;29069159;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A29069160-29069291%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A29069160-29069291&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.912595817954 0.952323581544 1.05751677277 29395672 29395803 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;29395671;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A29069160-29069291%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A29395672-29395803&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NHHNFASFLFLFFFFADQSPSYFLPDTYHLGVCKEPVLNFQTDQRRLAQLRELRAKFFLS Same 466123 chr1:29069160-29069291+ 698 698 17 0 485 29069160 29070606 Best 715 715;1266;27704 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:29069160-29070606&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.44696969697 0.0 5.63560681818 0.9973 -1.79588863636 7.43149545455 0.803475737414 1.03050884431 1659 Best 1659 1659;1714;17473 14.11805 0.7087 -5.09758636364 19.2156363636 0.998958256726 1.05385461695 1123 791 791;1123;5276 0.0 0.0 ENST00000343067.8,ENST00000488277.1 CDSintron,NCintron coding exon(s) EPB41 alternative final exon 716 576302 chr6:130882955-130883107- NoOverlap chr6 130882955 130883107 - 6.6828078632 51 0.911928216774 1.31682161198 5.36598625122 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;130882954;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A130882955-130883107-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A130882955-130883107&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.985674865564 0.951739785901 1.01723843135 131204095 131204247 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;131204094;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A130882955-130883107-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A131204095-131204247&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSSFSPNLLPVPEMDLLSDISEEDPFGEADQITLDSLEHLSTGEISEQGDSEVAMPDLVLDSAIAPSQPDCPSPIHGK Same 577339 chr6:130882955-130883107- 656 656 60 0 472 130872424 130883107 690 690;716;8163 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:130872424-130883107&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.490196078431 0.109285714286 8.93822745098 0.964 1.20240784314 7.73581960784 0.970040149871 1.03410236851 965 944 944;965;3619 6.56459019608 0.7585 -6.49458627451 13.0591764706 0.723383142771 0.991655348776 2734 663 663;2734;5597 0.0 0.107173697996 chr18:5415818-5416378- ENST00000530757.5,ENST00000337057.7 UTR5,CDSintron coding exon(s) EPB41L2 alternative final exon 717 479241 chr10:122777743-122778015+ NoOverlap chr10 122777743 122778015 + 13.599437328 91 0.751973989237 3.75145492089 9.84798240711 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122777742;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122777743-122778015%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122777743-122778015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01449281575 0.951010955703 1.02940529845 124537259 124537531 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124537258;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122777743-122778015%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124537259-124537531&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLSAGDWPELQLVGGSGRCSGRVEILHQGAWGTVCDDLWDLNEAEVVCRQLGCGRAMSALGKAHFGPGSGDIFLDNLQCAGVERYLGQCTHSGWSEHNWPPR Same 481146 chr10:122777743-122778015+ 670 670 47 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.648351648352 0.458408679928 22.0237769231 0.929 4.72578681319 17.2979901099 1.01690834597 1.02032757982 597 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 60.248443956 0.9547 2.30412197802 57.944321978 0.93997208402 0.990389333549 1885 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.0553273955887 chr10:122630961-122631281+ 0.175644076243 chr10:122618017-122618340+ ENST00000439464.6 NC pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 718 716327 chr7:57192420-57192692+ Extension chr7 57192420 57192692 + 6.34560438352 91 0.372233945958 -6.41964168544 12.765246069 chr7:57192420-57192698+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57192419;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57192420-57192692%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57192420-57192692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.659026228034 0.950997737086 0.946397648831 57260127 57260399 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57260126;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57192420-57192692%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57260127-57260399&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IMIEHINQMCSICINIILAYTISLLGILIY*SHLISSPLCLEGIILSLFIINTLIPLNIHFTLAFIIPITLLVFAACEGTAGLALLVSISNMYGLDYVHNLNLLQC Same 716924 chr7:57192420-57192692+ 630 630 88 18 65 57190149 57192692 73 73;718;767;5573;6277;8782;10566 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57190149-57192692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.362637362637 0.263768115942 26.2205406593 0.8027 -12.1057373626 38.326278022 0.866817414594 1.09502934878 1401 832 832;1401;1806;1937;2083;2177;2604 59.5107857143 0.9148 -14.5658659341 74.0766516484 0.911311599174 0.997422115678 2050 1370 1370;1632;1670;1726;2011;2050;2238 0.833625630951 chrM:10470-10766+ 0.94725651423 chrM:10470-10766+ pseudogene MTCO3P4 mitochondrially encoded cytochrome c oxidase III pseudogene 4 (ENSG00000228851) 719 497508 chr12:123475663-123475743- NoOverlap chr12 123475663 123475743 - 19.9200260675 27 0.897795071336 4.48307419706 15.4369518704 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;123475662;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A123475663-123475743-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A123475663-123475743&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.980772085405 0.950641356869 1.04955996419 123960210 123960290 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;123960209;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A123475663-123475743-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A123960210-123960290&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IFTAIMPMVAAGLIIDDPTLQPVRRLVSLVGTVCVLGFV Same 499520 chr12:123475663-123475743- 677 677 42 0 486 123475663 123475743 Best 719 719 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:123475663-123475743&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.518518518519 0.5625 28.8359814815 0.9931 5.25103333333 23.5849481481 1.02650572953 1.02100414069 509 Best 509 509 43.4117148148 0.9333 7.53988888889 35.8718259259 0.974030270855 1.02742054448 1522 Best 1522 1522 0.0 0.0 ENST00000623184.1,ENST00000340724.6 NC,CDSintron coding exon(s) RILPL1 cassette exon 720 583283 chr8:1726279-1726557+ NoOverlap chr8 1726279 1726557 + 4.77049888174 93 0.448618689348 -3.17026234797 7.9407612297 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;1726278;279;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A1726279-1726557%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A1726279-1726557&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.530968698227 0.950418383186 1.05636587532 1674445 1674723 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;1674444;279;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A1726279-1726557%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A1674445-1674723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SY*NAEYEDLNFDPYLIPTADLKPGELPLLEVGNWVVLPVEMSIHISVSSGDVLPS*APPSLGLKTDSDPGLLDRAALTSAQPGLEHGQCLDISS Same 584211 chr8:1726279-1726557+ 542 542 178 39 487 1726279 1726557 Best 720 720 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:1726279-1726557&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.462365591398 0.344444444444 -2.59719784946 0.1295 -5.75871827957 3.16152043011 -0.0314024861799 0.618005537913 61409 Best 61409 61409 40.2818494624 0.6819 4.14271827957 36.1391311828 1.02620295758 1.03479283078 679 Best 679 679 0.0 0.829397407126 chrM:7586-8269+ pseudogene mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene (ENSG00000283576) 721 469251 chr1:226159184-226159273+ NoOverlap chr1 226159184 226159273 + 3.73474997977 30 0.907086289769 -7.2906933864 11.0254433662 ENST00000366812.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;226159183;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A226159184-226159273%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A226159184-226159273&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.346734692713 0.949932977702 0.997251213369 226346885 226346974 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;226346884;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A226159184-226159273%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A226346885-226346974&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCLSYLLLCKLDLIQLLHVLLIVLLLQLADENLLLFVVPWILLGCILLELHGSLGV Same 471129 chr1:226159184-226159273+ 731 731 -10 0 488 226159184 226159273 Best 721 721 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:226159184-226159273&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.182186234818 1.13672666667 0.9535 -9.95352666667 11.0902533333 0.519838550093 1.09687009885 3009 Best 3009 3009 -4.82407666667 0.9218 -29.0368 24.2127233333 0.441295630557 1.12583122436 3774 Best 3774 3774 0.0 0.0 ENST00000366812.5,ENST00000464927.1 AntiCDS,AntiNCintron not annotated putative regulatory region 722 491560 chr12:52277540-52277659+ NoOverlap chr12 52277540 52277659 + 6.73296504393 40 0.791503776608 0.178772439808 6.55419260412 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52277539;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52277540-52277659%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52277540-52277659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.933164539365 0.948115523551 1.0443955301 52671324 52671443 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52671323;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52277540-52277659%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52671324-52671443&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DPPALQEEGGSGSTKGKLAWLEAALQRAKQDVM*QLCEY*EL Same 493538 chr12:52277540-52277659+ 663 663 59 8 489 52264108 52277736 Best 722 722;766;1062;1070;1290;2405;17351 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52264108-52277736&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.616666666667 0.0945626477541 7.8015875 0.9835 -4.711835 12.5134225 1.0074123644 1.05152643497 672 546 546;672;709;783;1453;1608;1712 28.15324 0.8268 1.2945825 26.8586575 1.02029061455 1.03896875505 783 Best 783 783;839;1030;1208;1231;1471;2431 0.052841616037 chr12:52172198-52172418- 0.326074812614 chr12:52488328-52488548- ENST00000423955.6,ENST00000549788.1 UTR5intron,AntiNCintron pseudogene keratin family pseudogene (ENSG00000284883) 723 543328 chr20:36207550-36207624+ NoOverlap chr20 36207550 36207624 + 7.17186008453 25 0.914579995422 -3.54594788313 10.7178079677 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;36207549;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36207550-36207624%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A36207550-36207624&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.789150495301 0.947715768392 1.02359460767 34795472 34795546 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;34795471;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36207550-36207624%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A34795472-34795546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLPNDVSSEAPVGQAEQQRSTLSDLGFAQLQPPGDFASPK Same 544717 chr20:36207550-36207624+ 701 701 22 0 105 36205843 36208375 125 125;723;906;1185;1244;1425;3209;4167;4835;30161 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:36205843-36208375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.653333333333 0.378787878788 7.840484 0.9924 -5.232348 13.072832 0.861644991565 1.0594134252 1423 172 172;398;1291;1366;1423;1562;1733;1995;6918;10311 8.02658 0.5062 -11.804952 19.831532 0.758955938773 1.06603051076 2610 1508 1508;2023;2148;2169;2610;3152;3488;3607;4506;5668 0.0 0.0 ENST00000479336.1,ENST00000202028.9 NC,CDSintron coding exon(s) EPB41L1 three consectutive cassette exons 724 732836 chrX:49879843-49880307+ Extension chrX 49879843 49880307 + 11.9040399748 155 0.80243396166 5.99565871659 5.90838125816 chrX:49879843-49881621+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;49879842;465;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A49879843-49880307%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A49879843-49880307&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.951105848935 0.947630634881 0.993665503292 49644446 49644910 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;49644445;465;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A49879843-49880307%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A49644446-49644910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGGGGNSDEVPPPTLPSDPPRPPDPSPRRSRAPRRRPRPRPQTRLRTPPQPRPRPPPRPRPRRGPGGGCLDVDFAVGPPGCSHVNSFKVGENWRQELRVIYQCFVWCGTPETRKSKAKSCICHVCGTHLNRLHSCLSCVFFGCFTEKHIHEHAETKQHNLAVDLYYGGIYCFMCK Same 733434 chrX:49879843-49880307+ 638 638 86 0 490 49878962 49880307 Best 724 724;6474;8567;14080;37462 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:49878962-49880307&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.627956989247 0.769612711023 12.4948883871 0.9416 5.65898322581 6.83590516129 1.00753001987 0.966253039384 671 Best 671 671;7761;13348;22106;48276 19.3701909677 0.762 3.07424774194 16.2959432258 1.04273870431 0.977823458068 433 Best 433 433;14478;35334;44633;49684 0.0 0.497621069815 chrX:55486804-55488939- ENST00000621775.1 Extension5p pseudo-exon USP27X pseudogenic sequence upstream of ATG 725 484362 chr11:47323975-47324124+ NoOverlap chr11 47323975 47324124 + 5.62230801165 50 0.457854886702 -3.73086012423 9.35316813588 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;47323974;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A47323975-47324124%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A47323975-47324124&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.422622473728 0.947217428011 1.00876212135 47345526 47345675 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;47345525;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A47323975-47324124%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A47345526-47345675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSLSSQLGLIVVTIGINQPYLAFLHICTHAFFKAILFICSGSIIHNLNNE Same 486304 chr11:47323975-47324124+ 850 850 -125 0 491 47323975 47326737 Best 725 725;7074;33773;69571;73021 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:47323975-47326737&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4 0.410396716826 -3.869822 0.2095 -5.34535 1.475528 -0.0299892455327 0.487197551374 60522 8028 8028;16774;35166;46166;60522 28.921934 0.7139 -6.862078 35.784012 0.965522520509 0.944902164948 1626 Best 1626 1626;8192;19804;26924;68134 0.0 0.756312438118 chrM:12337-14148+ ENST00000311027.9,ENST00000460452.5 CDSintron,NCintron pseudogene Mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) unprocessed pseudogene (ENSG00000283338) 726 582242 chr7:113117405-113117578- NoOverlap chr7 113117405 113117578 - 13.3147138265 58 0.930843218812 3.29198620828 10.0227276182 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;113117404;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A113117405-113117578-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A113117405-113117578&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.940820140987 0.946958225507 0.980384109825 112757460 112757633 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;112757459;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A113117405-113117578-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A112757460-112757633&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLGTFSPQDSNIMTSVSTQLSLVLMSLLLVLPVVEAVEAGDAIALLLGVVLSITGICACLGVYARKRNGQM Same 583203 chr7:113117405-113117578- 675 675 51 0 492 113117405 113117578 Best 726 726 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:113117405-113117578&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.477011494253 0.308510638298 18.4159034483 0.9937 5.26009655172 13.1558068966 0.937640861684 1.00689935651 1156 Best 1156 1156 26.8809275862 0.5394 7.23590344828 19.6450241379 1.06490228752 1.03128509102 194 Best 194 194 0.0 0.0 ENST00000397764.7,ENST00000441928.1 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000214194 727 505778 chr14:105587591-105587872- NoOverlap chr14 105587591 105587872 - 5.71632340344 94 0.456574284652 -0.739313843165 6.45563724661 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105587590;282;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105587591-105587872-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105587591-105587872&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.688179592524 0.946693821874 1.0539058053 106053928 106054209 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106053927;282;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105587591-105587872-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106053928-106054209&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVLTSSGHLSTPVPPPPPCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGATFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAQPWNHGETFTCTAAHPELK None NA NA 0 493 105584148 105601713 Best 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.645390070922 0.458708708709 13.805337234 0.9281 -6.5463712766 20.3517085106 0.938550822512 1.00661333583 1151 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 16.1312159574 0.4813 -12.1015702128 28.2327861702 0.896957878038 1.06415072689 2118 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0 ENST00000390539.2 NC immunoglobulin segment overlaps an immunoglobulin region 728 553968 chr3:167915124-167915201+ NoOverlap chr3 167915124 167915201 + 10.7891268134 26 0.907072556649 2.46907305546 8.32005375796 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;167915123;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A167915124-167915201%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A167915124-167915201&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.979751367685 0.946519113972 1.04799331334 167632912 167632989 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;167632911;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A167915124-167915201%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A167632912-167632989&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILRRLIRVETLWLVDNSLVDLSAIRLPR Same 554917 chr3:167915124-167915201+ 667 667 61 0 229 167912863 167917494 287 287;728;2041;2778 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:167912863-167917494&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.410256410256 0.309523809524 9.25644230769 0.9637 -3.37311538462 12.6295576923 0.89059569563 1.05977187791 1323 421 421;1323;1943;3547 31.2166 0.7825 2.48832307692 28.7282769231 1.04454044564 1.05122329095 411 Best 411 411;622;1016;1276 0.0 0.0 ENST00000459923.5,ENST00000469060.5 NC,NCintron pseudogene unitary pseuodgene ENSG00000244227 729 588830 chr9:35353105-35353551+ NoOverlap chr9 35353105 35353551 + 6.13887990521 149 0.83940493911 1.027537535 5.11134237021 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35353104;447;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35353105-35353551%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35353105-35353551&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.970959210007 0.946389319561 1.02486776886 35353102 35353548 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35353101;447;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35353105-35353551%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35353102-35353548&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAALSCDSMMEEIIIGPETFSDMVHIDLNEEEECAAHVLKDVFDKSSCVLGGSQEDEDVEIKFYTSKLGRAIHHFRSALQGVFQKLENSGSISPEDLESNESGSQSENSDRLLGTVSSGGAQDCSLESPGSQGSESLLSVVSGGVGVSTQGEQTPQDPSTFSLASNNSLPSVALAPCLGSETCSRPGSPK Same 589773 chr9:35353105-35353551+ 555 555 174 0 424 35341754 35353800 597 597;674;681;729;1148;1380;3195 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35341754-35353800&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.514541387025 0.176693809787 7.71265234899 0.996 -1.71032818792 9.42298053691 1.00677099299 1.07493166697 676 613 613;676;680;821;951;1589;9444 14.6757604027 0.6661 -3.18923221477 17.8649926174 1.06217402574 1.03444658488 210 Best 210 210;564;1088;1576;2310;2740;16707 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron not annotated potentially spurious 730 549358 chr22:50730704-50731315+ NoOverlap chr22 50730704 50731315 + 6.71856271726 204 0.63166119885 3.82257352726 2.89598919 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50730703;612;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50730704-50731315%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50730704-50731315&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05399392409 0.946285852153 0.874213783438 51169132 51169743 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51169131;612;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50730704-50731315%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51169132-51169743&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PLSLRRLFSSLGELSSISAQRSPGGPGGGASYSVRPSGRYPVARRAPSPVKPASLERVEGLGAGAGGAGRPFGLTPPTILKSSSLSIPHEPKEVRFVVRSVSARSRSPSPSPLPSPASGPGPGAPGPRRPFQQKPLQLWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKDDFVELGVTRVGHRMNIERALRQLDGS*RPTPTPAPAVPCR None NA NA 1 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.735294117647 0.958221024259 10.9105019608 0.8367 6.44468088235 4.46582107843 1.00271782135 0.866739422345 714 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 28.7886946078 0.8749 10.4679465686 18.3207480392 1.02286494804 0.967436154452 741 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.000118798377275 chr19:50661965-50662682- 0.25734847843 chr19:50661965-50662682- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 731 531037 chr19:37830880-37831143- NoOverlap chr19 37830880 37831143 - 5.02437385781 88 0.846562385124 -4.62994774211 9.65432159992 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37830879;264;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830880-37831143-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37830880-37831143&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.872674087117 0.945993088064 1.00794197636 38321520 38321783 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38321519;264;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830880-37831143-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38321520-38321783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQFIDNTTFFCQTTYSFSLHHLPYFYSLFNVCGSAPQQVQRVCCGHNWTRILCATEDGLLRFLSPVTGDLLVITWPLLVMDKALAWAYDSER Same 532504 chr19:37830880-37831143- 593 593 138 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.477272727273 0.267748478702 13.1779590909 0.9216 -1.92289204545 15.1008511364 0.955587403608 0.999995943507 1059 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 21.122475 0.474 -2.2954625 23.4179375 0.945488087966 1.05794222698 1850 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.172752351414 chr19:37892578-37895456- 0.485572804155 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 732 492761 chr12:100733773-100733856+ NoOverlap chr12 100733773 100733856 + 15.0000036093 28 1.0 9.85291425431 5.14708935496 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;100733772;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A100733773-100733856%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A100733773-100733856&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.99504298521 0.945669490264 0.872529673466 101127551 101127634 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;101127550;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A100733773-100733856%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A101127551-101127634&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTFLSFIFLTDKDVSSGSYNLSSATTGSYYSCVSQITIGEH Same 494743 chr12:100733773-100733856+ 699 699 33 0 439 100733773 100740104 626 626;732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:100733773-100740104&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488095238095 0.6 19.409675 0.9996 13.3718464286 6.03782857143 1.01607451038 0.837799719496 603 Best 603 603;976 22.425275 0.5172 17.3125035714 5.11277142857 0.724715462449 0.623926585187 2729 1093 1093;2729 0.0 0.0 ENST00000549155.5 NC coding exon(s) ANO4 extended by 3 5' exons 733 484567 chr11:60608382-60608408+ NoOverlap chr11 60608382 60608408 + 8.14068897565 9 0.943297474632 -16.4971109496 24.6377999253 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;60608381;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A60608382-60608408%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A60608382-60608408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.116383753988 0.945408129704 1.04850386572 60375855 60375881 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;60375854;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A60608382-60608408%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A60375855-60375881&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGKLLSEYLFILTILELFVASIVSHWAS Same 486513 chr11:60608382-60608408+ 1107 1107 -374 0 494 60608382 60608408 Best 733 733 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:60608382-60608408&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.75 6.39185555556 0.9578 -17.6381 24.0299555556 0.32354173076 0.945893589082 5125 Best 5125 5125 6.39185555556 0.2994 -17.6381 24.0299555556 0.167094090945 1.05620864307 7260 Best 7260 7260 0.0 0.0 pseudogene membrane-spanning 4-domains subfamily A member family unprocessed pseudogene (ENSG00000283601) 734 500695 chr14:22003591-22003665+ NoOverlap chr14 22003591 22003665 + 8.07142008066 25 0.924331120775 -2.32253213227 10.3939522129 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22003590;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22003591-22003665%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22003591-22003665&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.860131511556 0.945270654658 1.0345661442 22471830 22471904 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22471829;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22003591-22003665%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22471830-22471904&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFQASPIKSDSSFHLEKPSVQLSDSAVYYCALR None NA NA 0 495 22003591 22003665 Best 734 734 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22003591-22003665&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.573333333333 0.652173913043 11.878816 0.7073 2.986364 8.892452 0.662515166248 0.999321861277 2240 Best 2240 2240 20.723956 0.6201 -2.187208 22.911164 1.0379372661 1.05250954389 508 Best 508 508 0.0 0.0 ENST00000390446.3 NC immunoglobulin segment overlaps an immunoglobulin region 735 476339 chr1:237941554-237941745- NoOverlap chr1 237941554 237941745 - 4.12137968186 64 0.413400282292 -6.47442813357 10.5958078154 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;237941553;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237941554-237941745-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A237941554-237941745&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.273076852252 0.945178946329 0.961072100022 238104854 238105045 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;238104853;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237941554-237941745-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A238104854-238105045&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTPIIPLILLSLGGLPPLTRFLPK*IIIQEFTKNNSLITPNVIAIIMLLNLYFYIRLICSVSMTIFPTSNNMKIK Same 478233 chr1:237941554-237941745- 774 774 -39 15 236 237940783 237943644 302 302;662;735;826;878;1214;1221;3426 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:237940783-237943644&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 1.12280701754 0.1198890625 0.1205 -4.49031875 4.6102078125 0.0455500855656 0.847800672653 24160 15205 15205;16524;19960;20662;24160;29790;35876;52414 29.199996875 0.6895 -10.2132859375 39.4132828125 0.933272705496 0.943076434548 1926 316 316;468;540;604;1096;1312;1906;1926 0.0 0.856082047132 chrM:4470-5511+ pseudogene mitochondrially encoded NADH dehydrogenase 2 (MT-ND2) pseudogene (ENSG00000283166) 736 511825 chr16:54934815-54934844+ NoOverlap chr16 54934815 54934844 + 5.80388997197 10 0.898095674067 -12.7038801759 18.5077701479 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54934814;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54934815-54934844%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54934815-54934844&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0385341923268 0.944660179936 0.957334129828 54968727 54968756 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54968726;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54934815-54934844%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54968727-54968756&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VRFYAGFSPYYYFK Same 513466 chr16:54934815-54934844+ 681 681 55 0 496 54928752 54938880 Best 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4 1.71428571429 -0.54693 0.9987 -9.20345 8.65652 0.0215201991349 0.902285592311 32008 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -7.86894 0.8119 -14.60991 6.74097 -0.0447646873417 0.572189557289 68576 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.0 not annotated putative regulatory region 737 543977 chr20:52500942-52501022+ NoOverlap chr20 52500942 52501022 + 5.89184073607 27 0.995128415972 -4.97989261371 10.8717333498 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;52500941;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A52500942-52501022%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A52500942-52501022&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.640763378676 0.944419365055 1.00966029194 51117481 51117561 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;51117480;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A52500942-52501022%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A51117481-51117561&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TNMFKQKMKIDDKIMGSKMHTEQI*DSCTWFQSVGFTLTEFMIHYLHR Same 545368 chr20:52500942-52501022+ 893 893 -156 4 497 52493458 52501022 Best 737 737;9038 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:52493458-52501022&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.308641975309 0.0 3.92774074074 0.9944 -4.81276666667 8.74050740741 0.56845479935 1.02975524655 2723 Best 2723 2723;15619 2.19251481481 0.9345 -9.74315185185 11.9356666667 0.337336199686 0.914838047797 4316 Best 4316 4316;23639 0.0 0.0 ENST00000454600.1 NCintron not annotated putative regulatory region 738 534721 chr2:110271930-110272049+ NoOverlap chr2 110271930 110272049 + 7.81112498343 40 0.558111314565 0.189155014604 7.62196996883 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110271929;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110271930-110272049%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110271930-110272049&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.751274211393 0.944407381281 1.05438560687 111029507 111029626 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111029506;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110271930-110272049%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111029507-111029626&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFSSSMPVYDFNWWYSLYFIIYIIINTYIFKSVFLAMVYSNYRKHFHILCVCVCVL Same 536073 chr2:110271930-110272049+ 801 801 -63 0 64 110261435 110272049 71 71;655;738;1590;1755;2806;2841;5622 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110261435-110272049&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.358333333333 0.0 12.47613 0.7392 1.484495 10.991635 1.01489590552 1.05513749918 616 39 39;230;616;725;1137;1749;1796;2218 32.9388775 0.7961 2.3562575 30.58262 0.987061465633 1.02268003494 1318 260 260;295;766;1197;1279;1318;1559;1820 0.0 0.0 ENST00000562613.2 NCintron pseudogene ion transport protein domain-containing transcribed unprocessed pseudogene (ENSG00000261760) 739 527575 chr19:16727565-16727672+ NoOverlap chr19 16727565 16727672 + 9.21761117244 36 0.710273984215 3.64584161507 5.57176955738 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;16727564;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A16727565-16727672%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A16727565-16727672&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00405144885 0.944079864885 0.98916988988 16838376 16838483 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;16838375;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A16727565-16727672%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A16838376-16838483&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHLGGWAAMSVGPLSPSTRRRLLRGEAGPLPAPPPSGVTIFISSTVSGK Same 529021 chr19:16727565-16727672+ 691 691 48 0 498 16727565 16731241 Best 739 739;1655 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:16727565-16731241&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.675925925926 0.608695652174 14.7326361111 0.8529 7.99782777778 6.73480833333 0.956877081244 0.944078284783 1050 Best 1050 1050;1945 16.1077694444 0.3633 8.44316666667 7.66460277778 0.67803738088 0.773310704167 2889 2778 2778;2889 0.0 0.0 ENST00000524140.6,ENST00000518676.5 UTR5intron,NCintron pseudo-exon NWD1 pseudo-exon 740 549338 chr22:50683340-50683420+ NoOverlap chr22 50683340 50683420 + 20.124496354 27 0.815981282266 12.4416407441 7.68285560994 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50683339;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50683340-50683420%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50683340-50683420&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.97498231773 0.943943771871 0.92439757929 51121768 51121848 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51121767;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50683340-50683420%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51121768-51121848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CESVCVSLCPAHAMCAFLCAHVLLCSDGLSSHPAVIPSSPQQESCARVLLFRGANRDVRNYNSQTAFQVHR None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.567901234568 0.460227272727 31.1454148148 0.9988 14.0215851852 17.1238296296 1.03622789804 1.03892448413 403 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 75.6786666667 0.8894 20.2627037037 55.415962963 0.953386317177 1.02391917561 1789 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.323853252301 chr19:50704437-50704514- ENST00000262795.5 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 741 579702 chr7:142720961-142721023+ NoOverlap chr7 142720961 142721023 + 6.04194751808 21 0.77095844823 -9.41192369802 15.4538712161 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142720960;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142720961-142721023%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142720961-142721023&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.464892739389 0.943179012691 0.931854746225 142428785 142428847 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142428784;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142720961-142721023%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142428785-142428847&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFLECVQDMDHENMFWYRQDPGLGLRLIYFSYDVK None NA NA 0 499 142715668 142721155 Best 741 741;2270;13758;67177 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142715668-142721155&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.646153846154 13.6695809524 0.9902 -18.0826714286 31.752252381 0.795786590984 1.16823431183 1687 1200 1200;1687;1696;2238 18.3805666667 0.534 -24.2073095238 42.5878761905 0.863001782592 0.843335302345 2262 2138 2138;2262;2888;3019 0.0 0.0 ENST00000390400.2,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 742 586666 chr8:53229213-53229293- NoOverlap chr8 53229213 53229293 - 10.79897412 27 0.873216743103 4.12967039705 6.6693037229 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;53229212;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A53229213-53229293-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A53229213-53229293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.999162678929 0.9430887722 1.00035969896 54141773 54141853 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;54141772;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A53229213-53229293-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A54141773-54141853&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVVEMSSYSSSGREEFNDLGLTQITTAV Same 587607 chr8:53229213-53229293- 672 672 70 0 500 53229213 53229293 Best 742 742 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:53229213-53229293&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.456790123457 0.736363636364 14.794962963 0.9991 6.78055925926 8.0144037037 1.00193898578 0.962328398941 717 Best 717 717 37.9440185185 0.9798 14.535 23.4090185185 1.02693630787 1.03508911703 665 Best 665 665 0.0 0.0256175688896 chr6:154090952-154091487+ ENST00000265572.7,ENST00000522508.1,ENST00000524425.1 UTR3,NC,AntiNCintron coding exon(s) OPRK1 known STOP-codon readthrough 743 473676 chr1:114092005-114092085- NoOverlap chr1 114092005 114092085 - 16.7653703866 27 0.81514881785 11.4258964812 5.33947390539 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;114092004;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A114092005-114092085-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A114092005-114092085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.994212268099 0.942979638509 0.854394086383 114634627 114634707 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;114634626;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A114092005-114092085-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A114634627-114634707&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFSSLQWQGRAASFDSESSCPSPKPPPTP*DVQPNNTNGTQQCSLCTCSTV Same 475556 chr1:114092005-114092085- 712 712 31 2 501 114091905 114092085 Best 743 743;22257 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:114091905-114092085&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.592592592593 0.566433566434 20.8216296296 0.9995 11.5863888889 9.23524074074 1.0398680361 0.980634422573 366 Best 366 366;48876 53.7450148148 0.919 28.6770074074 25.0680074074 0.987163467826 1.01437550603 1317 Best 1317 1317;58318 0.0 0.213944128665 chr12:33376830-33376901- ENST00000369547.5,ENST00000610096.1 UTR3,NC coding exon(s) SYT6 alternative final exon 744 663564 chr19:1526910-1526996+ Extension chr19 1526910 1526996 + 11.1158862802 29 0.696488057185 3.89646561225 7.2194206679 chr19:1526910-1527008+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;1526909;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1526910-1526996%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A1526910-1526996&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.968700671111 0.942488205451 1.03104867394 1526909 1526995 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;1526908;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1526910-1526996%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A1526909-1526995&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLCGTPNFLDPEVVSRNGHSCQ*DIWALGCIM Same 664180 chr19:1526910-1526996+ 719 719 25 8 61 1524154 1533821 68 68;129;412;744;947;2039;3059;9713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:1524154-1533821&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.586206896552 0.134259259259 23.9727724138 0.9461 8.79055172414 15.1822206897 1.0251998875 1.04238115827 523 205 205;265;523;631;1057;1237;1482;2663 57.9414482759 0.8979 14.2054551724 43.7359931034 0.985668287659 1.02774466763 1334 449 449;648;739;1129;1230;1261;1334;1921 0.0 0.317074796787 chr5:58457488-58457583- ENST00000334770.8 Extension5p pseudo-exon PLK5 pseudo exons 745 483232 chr11:1084290-1084394+ NoOverlap chr11 1084290 1084394 + 9.10360870702 35 0.595911890048 1.6717400198 7.43186868722 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1084289;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1084290-1084394%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1084290-1084394&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.860937151802 0.942430655996 1.05231138026 1082286 1082390 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1082285;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1084290-1084394%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1082286-1082390&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QQGPGDLTGVPGPAEVPIPHSPANYAEHWCSLLKKTETPFGRCHSAVDPAEYYKVGGTHTPRPPCHQGGLR Same 485162 chr11:1084290-1084394+ 764 764 -19 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.609523809524 0.307917888563 25.7449428571 0.9244 7.46386571429 18.2810771429 1.03781365289 1.00956498469 389 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 39.6564742857 0.8534 -3.08379428571 42.7402685714 1.01084101454 0.960685979846 932 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0753330262541 chr11:1027965-1028059- 0.376163366247 chr11:1172429-1172523+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 746 711631 chr6:148519894-148520385+ Extension chr6 148519894 148520385 + 11.7659243694 164 0.88688849935 3.79572806515 7.97019630426 chr6:148519546-148520385+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;148519893;492;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A148519894-148520385%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A148519894-148520385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.976314893458 0.942403277172 1.02750497055 148841030 148841521 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;148841029;492;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A148519894-148520385%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A148841030-148841521&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLGSLSHGVSTDGVCFYDNHRRRHHLLVSLEEFQSVRKQIRLKKTDTNYSCSRAFLCQRPSRKGVTSTTCDLQLLRQKGKGGGSCGFPGRRVRGRTSVSEFNITYVVERSLYSHLNLTQLVRPASDRTLSKAERQDLRRCLLEEDEEAKRKWAATVDRCTKRVLLRIHQKSVSHK Same 712237 chr6:148519894-148520385+ 669 669 77 0 502 148513599 148520385 Best 746 746;13422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:148513599-148520385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.587398373984 0.591630591631 18.1495664634 0.9809 5.76670670732 12.3828597561 0.947130323258 1.04388299944 1106 Best 1106 1106;11023 32.2590615854 0.8636 7.61326890244 24.6457926829 0.968724756374 0.997158041806 1588 Best 1588 1588;12932 0.0 0.0 ENST00000367467.7 ExtensionMid coding exon(s) SASH1 splice donor site shift 747 549667 chr22:25381371-25381577- NoOverlap chr22 25381371 25381577 - 9.04129271922 69 0.365761850897 3.74962900471 5.29166371451 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;25381370;207;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25381371-25381577-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A25381371-25381577&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.841313495599 0.942186874571 1.02424503922 25777338 25777544 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;25777337;207;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25381371-25381577-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A25777338-25777544&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YMYWADWGETPWIEQVGMDDSTQKIIVDLDIYWPNRLTIDLGEKKLYWADTKLGFIHRANLDGSFR*VPAQSR Same 551007 chr22:25381371-25381577- 879 879 -132 2 503 25374157 25381577 Best 747 747;1980;4988;24697 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:25374157-25381577&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.570048309179 0.5390625 20.8671405797 0.7408 10.6246898551 10.2424507246 1.06054451911 1.01949291733 147 15 15;22;147;4401 57.7915855072 0.9097 19.5249173913 38.2666681159 1.02735194272 0.962679265425 656 Best 656 656;1152;1264;1743 0.953179345255 chr11:68357650-68357847+ 0.97500029606 chr11:68357650-68357847+ ENST00000402859.6 UTR5 pseudogene LRP5L converted to pseudogene (ENSG00000100068) after 3 exons added. This is still a protein-locus in GENCODEv28; it will be updated as a pseudogene in v29 748 465026 chr1:42497121-42497198+ NoOverlap chr1 42497121 42497198 + 10.579415358 26 0.882307164111 2.50955780194 8.06985755609 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;42497120;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42497121-42497198%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A42497121-42497198&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.978359664548 0.941396826867 1.04467098871 42962792 42962869 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;42962791;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42497121-42497198%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A42962792-42962869&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AKEQNQRLDEEILALRNRVRSLDSEKK Same 466886 chr1:42497121-42497198+ 676 676 72 0 504 42497121 42497198 Best 748 748 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:42497121-42497198&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.371794871795 0.410526315789 13.2244 1.0 -0.573242307692 13.7976423077 1.02362633932 1.04609874306 545 Best 545 545 19.2036192308 0.5177 -0.438134615385 19.6417538462 0.990196320965 1.03071128933 1277 Best 1277 1277 0.0 0.0 ENST00000428554.6,ENST00000477155.5 UTR5,NC pseudo-exon CCDC30 multiple pseudo-exons 749 573551 chr6:2743962-2744036- NoOverlap chr6 2743962 2744036 - 8.45685206175 25 0.865089494163 -1.92114009023 10.377992152 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;2743961;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A2743962-2744036-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A2743962-2744036&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.884541679928 0.941340414235 1.03607837617 2744196 2744270 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;2744195;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A2743962-2744036-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A2744196-2744270&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MDFTLRRKDVWVVGSVCLLSSSVLWCLIR Same 574580 chr6:2743962-2744036- 687 687 62 0 505 2743890 2749408 Best 749 749;1132;3346 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:2743890-2749408&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.493333333333 0.661764705882 12.944396 0.966 -2.65462 15.599016 0.985323710348 1.01949267396 869 Best 869 869;2104;2460 13.261856 0.5273 -6.2752 19.537056 0.879759339443 1.04462609389 2194 Best 2194 2194;2807;4999 0.0 0.0 ENST00000274643.8 CDSintron coding exon(s) MYLK4 alternative first exon 750 525307 chr18:10708277-10708465- NoOverlap chr18 10708277 10708465 - 7.78779987873 63 0.915651760056 4.34726661373 3.440533265 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;10708276;189;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A10708277-10708465-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A10708277-10708465&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.998086696557 0.941028083401 0.90278050757 10708275 10708463 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;10708274;189;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A10708277-10708465-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A10708275-10708463&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HCVSVTVCAASCYTEATMLFSRQSTLDDLDGQEIPKTSERARPRLRKMLSMDMSSSSADSGSLASR Same 526751 chr18:10708277-10708465- 702 702 48 0 506 10708277 10714957 Best 750 750;73307 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:10708277-10714957&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.457848837209 8.35312063492 0.9998 5.5031984127 2.84992222222 0.838478791097 0.766304544294 1517 Best 1517 1517;20268 18.1397761905 0.9203 7.83261587302 10.3071603175 0.918129277443 0.896662155585 2021 Best 2021 2021;32460 0.0 0.0 ENST00000582913.5,ENST00000302079.10,ENST00000584167.1 NC,CDSintron,AntiNCintron coding exon(s) PIEZO2 cassette exon 751 530195 chr19:13599752-13599862- NoOverlap chr19 13599752 13599862 - 10.7386972703 37 0.546196688792 4.62197018072 6.11672708956 ENST00000574974.1,ENST00000592864.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;13599751;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A13599752-13599862-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A13599752-13599862&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.919208701405 0.941008173254 1.01830697962 13710566 13710676 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;13710565;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A13599752-13599862-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A13710566-13710676&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSICFEGPPLRRRGGVVDHRDVILAHQAHKIHSTPQARRKEWE Same 531658 chr19:13599752-13599862- 761 761 -10 0 507 13599752 13599862 Best 751 751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:13599752-13599862&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.405405405405 19.6684891892 0.8997 7.21246756757 12.4560216216 1.03924731266 1.05201296622 373 Best 373 373 51.0804135135 0.8117 9.21470540541 41.8657081081 1.01308307647 0.991662579743 892 Best 892 892 0.0 0.0 ENST00000574974.1 CDS coding exon(s) CACNA1A alternative first exon 752 683750 chr20:64098800-64098883+ Extension chr20 64098800 64098883 + 11.2960391002 28 0.737702318281 4.26358567923 7.03245342097 chr20:64098275-64098883+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;64098799;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A64098800-64098883%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A64098800-64098883&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.979417711183 0.940866638602 1.01895854073 62730153 62730236 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;62730152;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A64098800-64098883%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A62730153-62730236&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGVDLPMVPVSPQSPSTPNTELTQVTAL Same 684338 chr20:64098800-64098883+ 707 707 45 0 508 64098800 64098883 Best 752 752 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:64098800-64098883&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.630952380952 0.381818181818 18.086575 0.9438 6.45386428571 11.6327107143 1.01282346319 1.04889104773 630 Best 630 630 30.5594285714 0.9233 7.92671785714 22.6327107143 1.03270674553 1.04192630326 588 Best 588 588 0.0 0.0982051202082 chr19:920290-920748+ ENST00000336866.6 Extension3p coding exon(s) OPRL1 known STOP codon readthrough 753 510861 chr16:20729458-20729553+ NoOverlap chr16 20729458 20729553 + 17.923999913 32 0.607026302739 9.96969690733 7.95430300571 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20729457;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20729458-20729553%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20729458-20729553&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.949099968126 0.940841566706 1.01847990093 20740780 20740875 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20740779;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20729458-20729553%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20740780-20740875&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YRIGPFEVESVLAEHPAVVKSAVVSSPYPICGEVDEYH Same 512499 chr16:20729458-20729553+ 705 705 48 0 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.46875 0.201680672269 35.280246875 0.9711 20.689228125 14.59101875 1.01335553259 1.01370070092 626 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 67.60838125 0.7966 38.106215625 29.502165625 1.00234600465 1.01441163261 1076 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.86737087936 chr12:7324499-7324598+ 0.892222386647 chr12:7324499-7324598+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 754 491101 chr12:40438127-40438378+ NoOverlap chr12 40438127 40438378 + 10.3269333882 84 0.874983015255 1.13537734091 9.19155604729 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40438126;252;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40438127-40438378%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40438127-40438378&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00543566476 0.940491942145 1.01977593109 40831929 40832180 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40831928;252;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40438127-40438378%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40831929-40832180&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFVSLDMYIFFLSFVSVPTEHSCPSGLVFKYNVKACNSSCRSLSERDRSCDVEDVPVDGCTCPDAMYQNNEGNCVLKSQCDCYINDEVMQPGKLIHIDDNKWYGNYTYTCYDTEIK Same 493078 chr12:40438127-40438378+ 673 673 81 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.277329420396 14.1150190476 0.9824 2.62060714286 11.4944119048 0.989422481569 1.0443309891 837 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 33.3415738095 0.8881 -7.57396547619 40.9155392857 1.02535775978 1.02175333696 691 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.215931552657 chr11:1233013-1233268+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 755 579654 chr7:142313431-142313517+ NoOverlap chr7 142313431 142313517 + 6.5084035859 29 0.73493184742 -3.8504757824 10.3588793683 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142313430;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142313431-142313517%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142313431-142313517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.699309371798 0.939767423445 1.02036155228 142013254 142013340 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142013253;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142313431-142313517%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142013254-142013340&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLVMGMTNKKSLKCEQHMGHRAMYWYKQKAKKPPELMFVYSYEK None NA NA 0 235 142308759 142313661 301 301;580;755;2301;6419;13330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142308759-142313661&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.448275862069 0.241666666667 9.19556206897 0.9204 -8.56235172414 17.7579137931 0.976710180052 0.952472743448 920 Best 920 920;2287;2398;2499;3331;6365 15.6375896552 0.4775 -18.9549241379 34.5925137931 0.989295007701 0.913796752 1287 Best 1287 1287;2253;2669;3117;3138;4592 0.0 0.0 ENST00000390357.3 NC immunoglobulin segment overlaps an immunoglobulin region 756 505958 chr15:21609543-21610010+ NoOverlap chr15 21609543 21610010 + 5.1852987505 156 0.441509430271 -0.936544250864 6.12184300136 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;21609542;468;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21609543-21610010%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A21609543-21610010&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.723128363407 0.939726615074 1.08939101496 22332851 22333318 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;22332850;468;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21609543-21610010%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A22332851-22333318&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VMNPQLCLWLVLACWCGGFIHSIMQVILVIQLPFCGPNELDNFYCDVPQVIKLACMDTYVVEVLMIANSGLLSLVCFLVLLFSYAVILITLRTHFGQGQNKFLSTCASHLTVVSLIFMPCIFIYLRPFCSFSVDKIFSMFYTVMTPMLSPLIYTLRNADMKTAMKKLR Same 507670 chr15:21609543-21610010+ 642 642 114 0 509 21609137 21614980 Best 756 756;2089;3812;4681;5034;9481;63060 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:21609137-21614980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.482905982906 0.0370693069307 12.7417666667 0.9099 -1.31750769231 14.059274359 0.96514446772 1.02076641525 1003 347 347;392;1003;1013;1063;1118;2359 27.7403211538 0.8999 -19.2656916667 47.0060128205 0.900719781427 0.905873563343 2103 949 949;977;1339;1358;1773;2103;2551 0.973188994889 chr14:19747428-19748369+ 0.583588828819 chr14:19747428-19748369+ ENST00000625989.2 NCintron pseudogene (shared cluster) two olfactory receptor pseudogenes in close proximity (ENSG00000285491 & ENSG00000285116) 757 485931 chr11:111455382-111455477+ NoOverlap chr11 111455382 111455477 + 8.31660314649 32 0.774019130999 1.48008431122 6.83651883528 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111455381;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111455382-111455477%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111455382-111455477&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.963773980199 0.939676374915 1.035392015 111326107 111326202 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111326106;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111455382-111455477%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111326107-111326202&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSGVSPSLLSLVAVAPAGEQAGLSLTQAAEAAAWAAEEKASRRRHLAGEYAASLRHQLK Same 487889 chr11:111455382-111455477+ 692 692 65 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.376470588235 12.82179375 0.9773 -3.48435625 16.30615 1.05888237881 0.983915689674 169 Best 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 15.1522375 0.4626 -5.849175 21.0014125 1.0141434458 1.05865194862 867 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000527555.1,ENST00000525890.1 NCintron,AntiNC pseudogene unitary pseudogene ENSG00000255093 758 514640 chr16:67223826-67223924- NoOverlap chr16 67223826 67223924 - 6.79695758133 33 0.95030414005 -1.0393301682 7.83628774954 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;67223825;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A67223826-67223924-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A67223826-67223924&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.904413214786 0.939569090192 1.05682836166 67257729 67257827 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;67257728;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A67223826-67223924-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A67257729-67257827&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPGLWCPQTHGAVSWSGFQRPPTSNSPQCPVFFPQMLTYILSFLPLSDQKEASLVSWAWYRAAQNALREVR Same 516292 chr16:67223826-67223924- 771 771 -13 0 510 67223826 67227004 Best 758 758;58822 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:67223826-67227004&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.393899204244 4.93527272727 0.9999 -2.37397878788 7.30925151515 0.660752528705 0.992952312463 2254 Best 2254 2254;16307 13.0581575758 0.515 -2.38141515152 15.4395727273 0.897051793365 0.998943456918 2117 Best 2117 2117;41965 0.0 0.0 ENST00000393992.5,ENST00000462169.5 UTR5,NC redundant PhyloCSF signals are accounted for elsewhere on the list 759 586301 chr8:30867307-30867501- NoOverlap chr8 30867307 30867501 - 8.04521844983 65 0.942540627146 -3.02575528736 11.0709737372 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;30867306;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A30867307-30867501-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A30867307-30867501&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.9909749744 0.939353290337 0.935557661674 30724823 30725017 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;30724822;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A30867307-30867501-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A30724823-30725017&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEMRESGRHCRELEEQFCFLALPQSDVAQIYQNGISTRASTLKILGNPLLGIYMFRHVDIALNYSHSQSITVESILIFK Same 587240 chr8:30867307-30867501- 703 703 56 0 38 30849192 30875103 41 41;442;759;1484;2461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:30849192-30875103&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.379487179487 0.145089285714 7.69031538462 1.0 -5.50710461538 13.19742 1.00775774854 1.0121774047 666 108 108;522;666;1448;1996 18.51828 0.6904 -5.52462307692 24.0429030769 0.998054206352 1.04067893664 1139 180 180;472;1139;2145;2387 0.0 0.0 ENST00000523186.5 NC coding exon(s) TEX15 5' extended 760 491701 chr12:53676010-53676039+ NoOverlap chr12 53676010 53676039 + 5.88153006434 10 0.924422064546 -11.7981303692 17.6796604335 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;53676009;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53676010-53676039%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A53676010-53676039&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0342902267575 0.938758174352 0.948277841434 54069794 54069823 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;54069793;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53676010-53676039%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A54069794-54069823&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPARVRSAQRALGPK Same 493679 chr12:53676010-53676039+ 751 751 9 0 511 53675817 53677539 Best 760 760;1200;7057;16551;24062;35589 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:53675817-53677539&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.7 1.11111111111 3.05151 0.9282 -18.11772 21.16923 0.255392039459 0.955061386633 6811 2429 2429;5561;6811;18771;39125;47754 2.5443 0.3513 -20.13954 22.68384 0.186122337671 1.05614627144 6621 4274 4274;6621;14008;15709;25359;38314 0.0 0.127377933111 chr14:23059148-23059474- ENST00000338662.5,ENST00000549164.5 AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 761 534737 chr2:110345838-110345978+ NoOverlap chr2 110345838 110345978 + 5.41089998915 47 0.542955282949 -3.06966820803 8.48056819718 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110345837;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110345838-110345978%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110345838-110345978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.487975685266 0.938094680648 1.04389937706 111103415 111103555 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111103414;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110345838-110345978%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111103415-111103555&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEGSPCSAGTPATQACPSGHYCPGGSETHSGAPQACPEHTYLATDGGHSQAECLPCPAGYHCPWPGK Same 536089 chr2:110345838-110345978+ 853 853 -92 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.652482269504 0.135576923077 9.13457659574 0.7693 -0.636 9.77057659574 0.942954500396 1.06360156968 1121 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 23.0816787234 0.6888 -1.89484680851 24.9765255319 1.04003992967 1.03587269586 480 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 762 465045 chr1:42794424-42794606+ NoOverlap chr1 42794424 42794606 + 11.2304672159 61 0.957048104692 0.759800019811 10.4706671961 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;42794423;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42794424-42794606%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A42794424-42794606&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.958674209505 0.938077111843 0.962583834152 43260095 43260277 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;43260094;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42794424-42794606%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A43260095-43260277&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPAFFLAGVPSTYKGLPCPYASCILASTSLLTKGNRFILCCMASLMILFMMDQSYYPYDKILESENWKKLVYIGGE Same 466905 chr1:42794424-42794606+ 717 717 45 0 113 42789876 42798195 135 135;762;863;3977;11957 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:42789876-42798195&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.469945355191 0.0 17.0083114754 0.9943 3.08111967213 13.9271918033 0.932935359209 0.991885565759 1178 541 541;636;1178;1669;3207 40.7705704918 0.8425 3.9480704918 36.8225 0.966911912186 0.980406723897 1615 279 279;926;1615;1912;2144 0.0 0.0 ENST00000421630.5 NC protein-coding gene protein-coding gene ENSG00000274386 763 554106 chr3:173396510-173396539+ NoOverlap chr3 173396510 173396539 + 7.62869002819 10 0.918898298619 -13.9296198845 21.5583099127 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;173396509;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A173396510-173396539%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A173396510-173396539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.145267515171 0.937475682269 1.02132470725 173114300 173114329 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;173114299;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A173396510-173396539%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A173114300-173114329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AWFSSLLPTKRNVLEPMDNK Same 555055 chr3:173396510-173396539+ 883 883 -120 0 512 173395998 173398001 Best 763 763;48543;66812;70572 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:173395998-173398001&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 2.25 2.22697 0.9897 -21.77796 24.00493 0.284839671139 0.937962535302 5999 Best 5999 5999;29552;51158;53657 -7.44822 0.5235 -29.70406 22.25584 0.113677868717 1.03003217736 10333 Best 10333 10333;31080;37421;52265 0.0 0.0 ENST00000423427.1 UTR5 not annotated putative regulatory region 764 491109 chr12:40444077-40444319+ NoOverlap chr12 40444077 40444319 + 16.2364148052 81 0.771563399823 5.46972345496 10.7666913503 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40444076;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40444077-40444319%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40444077-40444319&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.994041569491 0.936806207311 0.986632625959 40837879 40838121 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40837878;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40444077-40444319%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40837879-40838121&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIQGKVCGLCGNNNGDLKDDFTTRYSSVASGALEFGNSWKTSQECSDTVAQTFPCDSNPYCKAWAVRKCEILRDSTFRDCHNKVALF Same 493086 chr12:40444077-40444319+ 689 689 75 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.084375 28.888017284 0.9811 11.5530580247 17.3349592593 1.04901885641 0.969182951743 269 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 57.4218530864 0.9711 4.97892962963 52.4429234568 0.954266453273 0.973490444779 1776 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.282507266572 chr11:1178444-1178683+ ENST00000454784.8 NC redundant PhyloCSF signals are accounted for elsewhere on the list 765 585820 chr8:10496290-10496466- NoOverlap chr8 10496290 10496466 - 10.495616984 59 0.838626015598 -1.20228989043 11.6979068744 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;10496289;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10496290-10496466-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A10496290-10496466&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.985118008716 0.93670553445 0.933168028037 10353800 10353976 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;10353799;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10496290-10496466-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A10353800-10353976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DPPIFPSLFLLEVPLTADCSSFPHSQGDSGAPLVCAIYGTQRLFQVGVFSGGIRSGSRGRPGMFVSVAQFIP*SQEETEKEGKAYTIISGSTR Same 586757 chr8:10496290-10496466- 684 684 81 12 31 10496192 10498809 31 31;380;667;765;1871;8583 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:10496192-10498809&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.519774011299 0.0 13.5840610169 0.9119 -1.23634576271 14.8204067797 1.0057783315 0.967313701823 682 61 61;238;682;997;2094;6527 15.7010915254 0.3259 -1.39131864407 17.0924101695 0.983435952672 1.03260507502 1365 24 24;1365;2041;2153;3654;11606 0.118604482286 chr8:10538476-10538793+ 0.158429442379 chr3:46742350-46742583- ENST00000521149.2 NCintron protein-coding gene protein-coding gene ENSG00000253649 766 491561 chr12:52277662-52277736+ NoOverlap chr12 52277662 52277736 + 6.61144777894 25 0.787539482719 -5.10360396147 11.7150517404 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52277661;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52277662-52277736%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52277662-52277736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.676016583612 0.936193930823 0.991203154332 52671446 52671520 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52671445;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52277662-52277736%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52671446-52671520&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVIVKWGLDFEIAACHKLLEGEESG*WVSWEVLQMWLQ Same 493539 chr12:52277662-52277736+ 700 700 66 1 489 52264108 52277736 722 722;766;1062;1070;1290;2405;17351 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52264108-52277736&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.56 0.198938992042 6.337832 0.9182 -10.37104 16.708872 0.817530621908 0.990616936764 1608 546 546;672;709;783;1453;1608;1712 23.051488 0.8674 -8.42558 31.477068 1.0051665568 1.01789853361 1030 783 783;839;1030;1208;1231;1471;2431 0.0643871802215 chr12:52172198-52172418- 0.311511827861 chr12:52488328-52488548- ENST00000423955.6,ENST00000549788.1 UTR5intron,AntiNCintron pseudogene keratin family pseudogene (ENSG00000284883) 767 578143 chr7:57192090-57192224+ NoOverlap chr7 57192090 57192224 + 10.0867333545 45 0.373013911142 0.933493349287 9.15324000518 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57192089;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57192090-57192224%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57192090-57192224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.678525515991 0.935858516334 1.02116838478 57259797 57259931 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57259796;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57192090-57192224%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57259797-57259931&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSPYECRFDPLPPTHIPFSIKFFLVAITFLLFDLEIVLLLPLP*ALQTSNLTLIISTALNTSYHFSPR Same 579182 chr7:57192090-57192224+ 946 946 -179 1 65 57190149 57192692 73 73;718;767;5573;6277;8782;10566 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57190149-57192692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.459259259259 0.423861852433 38.6923844444 0.8021 7.76416444444 30.92822 0.9903465459 1.03833967882 832 Best 832 832;1401;1806;1937;2083;2177;2604 90.2372666667 0.9272 26.7252911111 63.5119755556 0.964933268078 0.962923636719 1632 1370 1370;1632;1670;1726;2011;2050;2238 0.835072567159 chrM:10059-10404+ 0.94979541918 chrM:10059-10404+ pseudogene MTCO3P4 mitochondrially encoded cytochrome c oxidase III pseudogene 4 (ENSG00000228851) 768 525516 chr18:26546761-26548572- NoOverlap chr18 26546761 26548572 - 8.16851968955 604 0.676551986528 3.94386538672 4.22465430283 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26546760;1812;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26546761-26548572-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26546761-26548572&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.679863578367 0.93555230632 0.867519340084 24126725 24128536 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;24126724;1812;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26546761-26548572-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A24126725-24128536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALSAAVQYSACALPEDWQRDGNMARMPGSGDCNTSAGGSASAAAAAAENNGERGEGERGAGGRGRRHSRPHYCSAGEEEEEEEEEDEIQEVQITGDEEEEEDGGGGLEEDEEEEEEEEMGLDWDEPLEPEDSAGEELEPEPVHMINMDQSAALEPEAPPRLLAPRARGGPPGDGSELDPDVLQRPERARLSENTRLATRYAVRIFREYLSEKAQSPDFETMDKGALCRVLRSFYAEARSKSGQLYSKSSLISIRSSLNRYLNEPPYCRTLDLTKDPELRSANLTLAAVIRKLEEQGAGPVVQKQAITRADLRKLYTSSVFSTNTPFGLLNKVWFETCMYFCTRGRENQRELEEDSFGLAMDEDGRKFVYFKSLGPYHKSRSSSWSKKRAESSDEENLPRMYETGTEFCPYASFVKYLSKRNPLCKAFFQRPRDHCSEGDVTWYENKAIGKNLLGTRMQMLSKAAKLSKTYTNHCIGAVSIATLNSIAGIGTKLGSPAPQGCYAEALNGAARHHSHHPPTHPSHHHRPQPPSLGNTYILPKDSQVGPDVKSEAAPKRALYESVFGSGEICGPTSPKRLCIRPSEPVDAVVVVSVKHDPLPLLPEANGHRSTNSPTIVSPAIVSPTQVTKPNSMHEMFLWYHFGTNFCANAALGR Same 526959 chr18:26546761-26548572- 1220 1220 -452 0 513 26546760 26549891 Best 768 768;8399;25501;30998;36827;39211;40894;58515;70807;71876 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26546760-26549891&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.672185430464 0.884498381877 10.7371241722 0.9096 4.0508236755 6.68630049669 0.665455731936 0.755618954762 2222 Best 2222 2222;11084;12141;14614;15029;28171;62885;67707;71661;73517 20.3449773179 0.757 4.31083493377 16.0341423841 0.666848136228 0.78911640659 2942 Best 2942 2942;16429;16512;26392;33196;52681;55735;64991;73449;73633 0.0 0.0327598669763 chr5:77077174-77077878- ENST00000580059.5,ENST00000580191.5,ENST00000317932.11 UTR5,CDSintron,UTR5intron coding exon(s) KCTD1 5' extension 769 525009 chr18:76931114-76931224+ NoOverlap chr18 76931114 76931224 + 8.95129733472 37 0.523029369493 1.08339190483 7.86790542989 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;76931113;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A76931114-76931224%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A76931114-76931224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.761269012533 0.935402508991 1.05474577115 74643070 74643180 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;74643069;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A76931114-76931224%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A74643070-74643180&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YHNINFHLGQELIQHNSNGNSELLINGSIRLLAPEINNQSTGATLTISNDQLLSQSTALSSSGTQHTS Same 526452 chr18:76931114-76931224+ 826 826 -57 0 514 76931069 76931224 Best 769 769;20568 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:76931069-76931224&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.432432432432 0.396428571429 12.6275108108 0.6671 0.549567567568 12.0779432432 0.974047354178 1.05061102408 939 Best 939 939;9211 30.4946459459 0.6659 0.634356756757 29.8602891892 1.02544547371 1.02772619375 689 Best 689 689;2488 0.0 0.0 ENST00000253159.12,ENST00000543926.6 CDSintron,NCintron coding exon(s) ZNF236 cassette exon 770 470903 chr1:26164164-26164448- NoOverlap chr1 26164164 26164448 - 5.75697579321 95 0.769926234676 0.71982318955 5.03715260366 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;26164163;285;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26164164-26164448-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A26164164-26164448&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.940512307159 0.935112459544 1.00799168643 26490655 26490939 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;26490654;285;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26164164-26164448-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A26490655-26490939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPLAARPPSQAAAAAEARGPGFWDAFASRWQQQQAAAASMLRGTEPTPEPDPEPADEAAEEAAERPESQEAEPVAGFKWGFLTHKLAEMRVKAAPKGD None NA NA 0 99 26164164 26171664 118 118;480;770;917;2190;2831;39672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:26164164-26171664&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.761403508772 0.973028337316 9.81015684211 0.8919 1.24495894737 8.56519789474 1.00799998586 1.04754316327 663 207 207;447;663;1046;1279;1936;69663 14.4435547368 0.5267 0.621704210526 13.8218505263 0.925941595961 0.977724527961 1970 7 7;93;1782;1970;2239;2545;42994 0.0 0.0415380512001 chr8:144436558-144436681- protein-coding gene protein-coding gene ENSG00000282872 771 557408 chr3:164020569-164021051- NoOverlap chr3 164020569 164021051 - 5.63660806927 161 0.356630732144 -2.91284541055 8.54945347981 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;164020568;483;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164020569-164021051-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A164020569-164021051&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.680280722456 0.934671674319 1.09579139299 163738357 163738839 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;163738356;483;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164020569-164021051-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A163738357-163738839&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLILTHHLRGTLPGEDWQVDFTHMPPVKKTKYLLTLVDTFSGWVEVFPTPSEKAAEGSQILMTEIIHRFGLPHSTQSGNGPSFISQITQQVSQSLGIQWHLHIPYWLQSSEKAERANGILKTQLSKLTLEVKKP*TSLLPIALTHIRASPKAPSFLSPFKLMYGRPFLLQNR Same 558377 chr3:164020569-164021051- 518 518 253 29 515 164020256 164021752 Best 771 771;1003;8769;19116;25346;28404;49038 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:164020256-164021752&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.453416149068 0.13252240717 -1.73573975155 0.0261 -2.56212670807 0.826386956522 0.0718135426697 0.717560665622 19419 Best 19419 19419;24940;25790;26229;28407;40126;56143 -1.73573975155 0.0082 -2.56212670807 0.826386956522 0.0790140770972 0.565883747519 13932 Best 13932 13932;30001;32108;33417;45789;56644;69776 0.0 0.0 not annotated fragments of a reteroviral ORF 772 492500 chr12:78036864-78037385+ NoOverlap chr12 78036864 78037385 + 15.0439775634 174 0.911230903203 4.55220861682 10.4917689466 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;78036863;522;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A78036864-78037385%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A78036864-78037385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01579778918 0.934641465304 1.00280837333 78430644 78431165 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;78430643;522;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A78036864-78037385%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A78430644-78431165&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IMQRPAELSVFRSKEVRRKGACLQKQKSLTNLSLTSDGERRPTVRISNWFGNAAKASQREANYAERRSLSKFLSRSVQSLYHTSSSAWNLLPAGGSQSDSEDLEELSARRGLEGESDEDSRSEDENVSSKPSSISRSWAEEEGESCLREGTAHLDEEVILTMLGDLEQALYTDLLGK Same 494482 chr12:78036864-78037385+ 664 664 108 0 516 78036864 78037385 Best 772 772 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:78036864-78037385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.526819923372 0.28064516129 22.5345488506 0.9853 7.15568505747 15.3788637931 0.949284954283 1.03887879204 1094 Best 1094 1094 28.9923109195 0.8058 3.76923563218 25.2230752874 0.984503552022 1.01383616183 1355 Best 1355 1355 0.0 0.0 ENST00000397909.6 CDSintron coding exon(s) NAV3 alternative first exon 773 570929 chr6:30937209-30937307+ NoOverlap chr6 30937209 30937307 + 7.00654242707 33 0.677907941859 -1.81623937551 8.82278180258 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;30937208;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30937209-30937307%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A30937209-30937307&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.751175965706 0.934411383212 1.04966651464 30904986 30905084 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;30904985;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30937209-30937307%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A30904986-30905084&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVGVWGAGGTTYLSHWPCLCAPGPKPQKDSVSDWAIVLITLTLVAAIVSLMYGIKKVSNAMVQCVGSLCQWGWDLVPQDSEENR Same 571953 chr6:30937209-30937307+ 776 776 -3 0 517 30934623 30937307 Best 773 773;30920 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:30934623-30937307&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.505050505051 0.158653846154 7.6460969697 0.7567 -5.70285151515 13.3489484848 0.856168322295 1.0468097094 1445 Best 1445 1445;5452 10.4027666667 0.3298 -5.32107272727 15.7238393939 0.723340395167 1.01386345175 2735 Best 2735 2735;5913 0.0 0.0 coding exon(s) DPCR1 3 cassette exons 774 594050 chr9:136267383-136267514- NoOverlap chr9 136267383 136267514 - 6.18109538305 44 0.741500378008 -0.576431953094 6.75752733614 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136267382;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136267383-136267514-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136267383-136267514&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.847373592377 0.934294046347 1.05394136721 139159229 139159360 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139159228;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136267383-136267514-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139159229-139159360&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQMLERSLREEELRAQHQAALLRLREMALQEKTLAELAWLEHRRG Same 595006 chr9:136267383-136267514- 732 732 42 0 518 136245441 136267514 Best 774 774;1246;1671;1737;14484;26677;40966;49975;52795 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136245441-136267514&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.69696969697 0.843243243243 12.76805 0.8857 -0.452577272727 13.2206272727 1.06489731118 1.01890993529 109 Best 109 109;1226;1522;2295;2801;2860;36147;58996;63557 35.1281886364 0.7465 -3.06842045455 38.1966090909 0.98595262545 0.960276551125 1329 Best 1329 1329;2089;2472;2567;3628;6432;23671;29069;54815 0.0 0.293055817436 chr1:180053750-180053934+ not annotated putative regulatory region 775 535047 chr2:130914079-130914189+ NoOverlap chr2 130914079 130914189 + 6.56576206696 37 0.746161634282 -0.812911038463 7.37867310543 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;130914078;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A130914079-130914189%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A130914079-130914189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.843822249848 0.933890845525 1.05604140623 131671652 131671762 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;131671651;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A130914079-130914189%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A131671652-131671762&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CTQALSLTPLFLPSQTPEPGAHLPGEGEIEDNQLPTSPAEQVEQGWNQQTDRDDSETLSQQSESGSDTKTDPFESASDTESLSGYLPR Same 536400 chr2:130914079-130914189+ 735 735 40 0 519 130914079 130914189 Best 775 775 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:130914079-130914189&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.486486486486 0.4625 7.03700810811 0.8119 0.766435135135 6.27057297297 0.618185497436 0.94704512923 2448 Best 2448 2448 17.4403648649 0.6405 0.656916216216 16.7834486486 1.0221102744 1.01569162043 754 Best 754 754 0.0 0.0 ENST00000409359.5,ENST00000526381.1 UTR5,NC redundant PhyloCSF signals are accounted for elsewhere on the list 776 556706 chr3:125014846-125014926- NoOverlap chr3 125014846 125014926 - 9.30818902784 27 0.778488170019 0.501474115584 8.80671491226 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;125014845;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A125014846-125014926-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A125014846-125014926&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.929852793348 0.933494426566 1.05519712901 124733690 124733770 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;124733689;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A125014846-125014926-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A124733690-124733770&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSGVPSLGTHTLATVTGNGERTLRSVTLTNTSMSTTSGEAGSPAAAMHQETEGASLHVNVTDDMGLVSR Same 557675 chr3:125014846-125014926- 737 737 39 0 520 125014720 125014926 Best 776 776;19289;33579 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:125014720-125014926&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.604938271605 0.426315789474 14.0446407407 0.8476 3.39086296296 10.6537777778 0.890048473724 1.04516804961 1326 Best 1326 1326;5514;42047 15.814337037 0.3557 1.0551962963 14.7591407407 0.75343925621 0.956272207291 2620 Best 2620 2620;6004;42528 0.0 0.0 ENST00000477536.1,ENST00000311127.8 NC,CDSintron coding exon(s) HEG1 cassette exon 777 491948 chr12:55834568-55834729+ NoOverlap chr12 55834568 55834729 + 4.69719263497 54 0.877460446637 -3.10985554755 7.80704818252 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;55834567;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A55834568-55834729%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A55834568-55834729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.7496228935 0.933438806045 1.05989569199 56228352 56228513 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;56228351;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A55834568-55834729%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A56228352-56228513&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARPAVVLSHQQSHLQLLQTLQQKAKWHWIPSGVGLCEGSCRHQLPANTCSPADSLAPVSGGLGDTLGR Same 493926 chr12:55834568-55834729+ 682 682 95 0 521 55834568 55834729 Best 777 777 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:55834568-55834729&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.586419753086 0.146341463415 8.85744814815 0.9588 -2.23708333333 11.0945314815 1.0184263861 1.05517156148 583 Best 583 583 17.9905351852 0.5896 -1.99129074074 19.9818259259 1.06542285456 1.04616111431 192 Best 192 192 0.0 0.280700239811 chr2:219549152-219549354+ ENST00000471276.5 NCintron pseudogene extension TMEM198B was missing an internal portion (ENSG00000182796) 778 533063 chr2:38880599-38880706+ NoOverlap chr2 38880599 38880706 + 5.2056971805 36 0.932039283504 -3.48030275769 8.68599993818 ENST00000409077.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;38880598;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A38880599-38880706%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A38880599-38880706&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.739142931159 0.933278361941 1.05312199699 39107740 39107847 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;39107739;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A38880599-38880706%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A39107740-39107847&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSVFLLCLDGDCTRTSSGIYERNGIGIHTTPNGIVYTGSWKDDK Same 534445 chr2:38880599-38880706+ 802 802 -24 0 522 38880184 38880706 Best 778 778;1581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:38880184-38880706&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.222222222222 6.43581111111 0.9599 -3.31302777778 9.74883888889 0.83846183366 1.07275073208 1518 Best 1518 1518;1866 9.80704722222 0.6177 -6.03228611111 15.8393333333 0.849928471145 1.02380964925 2316 2192 2192;2316 0.0 0.0 ENST00000409077.2,ENST00000409665.5,ENST00000441049.5 CDS,UTR5,NC coding exon(s) MORN2 upstream coding exons led to the usage of a [CTG] for initiation, supported by human and mouse RP and conservation. 779 584201 chr8:54734595-54734741+ NoOverlap chr8 54734595 54734741 + 6.02257138795 49 0.815432476493 -0.12437956248 6.14695095043 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;54734594;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54734595-54734741%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A54734595-54734741&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.906274093939 0.933161339385 1.04558932083 55647155 55647301 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;55647154;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54734595-54734741%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A55647155-55647301&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFQSSETLLSEDEWKVLVLTGNTGTQANVTLWVYGDKGVTGPISLRKDSSEQLFLPGHEDEFQVNNTGSNIFL Same 585132 chr8:54734595-54734741+ 694 694 85 0 523 54734595 54734741 Best 779 779 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:54734595-54734741&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.489795918367 0.233333333333 5.52896938776 0.8941 -4.35020816327 9.87917755102 0.843088914335 1.08759766037 1498 Best 1498 1498 10.1313877551 0.6324 -6.12905306122 16.2604408163 0.916761372383 1.03994027406 2030 Best 2030 2030 0.0 0.0 ENST00000521465.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 780 557280 chr3:155704147-155704227- NoOverlap chr3 155704147 155704227 - 9.68517408548 27 0.763634359926 0.946996247327 8.73817783815 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;155704146;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A155704147-155704227-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A155704147-155704227&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.934538201748 0.932806254938 1.05502451114 155421936 155422016 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;155421935;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A155704147-155704227-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A155421936-155422016&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLLTMSYWNLEKRNCVQYRRHFLVDNSVFHGK Same 558249 chr3:155704147-155704227- 745 745 35 0 524 155704147 155704227 Best 780 780 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:155704147-155704227&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.432098765432 0.283216783217 12.7146074074 0.9705 2.21555925926 10.4990481481 0.96887083589 1.04599641875 973 Best 973 973 25.3635962963 0.5389 7.22354814815 18.1400481481 1.04491112178 0.99683087793 402 Best 402 402 0.0 0.0 ENST00000460012.5 UTR5 coding exon(s) PLCH1 alternative first exon 781 481632 chr10:100122506-100122571- NoOverlap chr10 100122506 100122571 - 8.9322953766 22 0.835031939907 -5.30384098806 14.2361363647 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100122505;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100122506-100122571-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100122506-100122571&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.810880293991 0.932077604331 0.959962542339 101882263 101882328 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101882262;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100122506-100122571-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101882263-101882328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EVETNITLLPYDPEQLWDGKKNIEERVQEGAQGLVEELRKAEGEFP Same 483548 chr10:100122506-100122571- 710 710 71 0 90 100105748 100122651 105 105;606;781;1442;2015;3184;14859;17791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100105748-100122651&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.560606060606 0.0 7.10561363636 0.7309 -5.3183 12.4239136364 0.559521893764 1.0641262337 2770 2120 2120;2485;2770;2888;8530;10411;15939;19257 17.9355636364 0.7074 -9.97216818182 27.9077318182 1.0007789143 1.04768888853 1101 209 209;267;1101;3020;3409;3819;4117;17036 0.0 0.319821311482 chr19:41004297-41004446+ pseudogene unitary pseudogene ENSG00000283232 782 696171 chr3:49119146-49119241- Extension chr3 49119146 49119241 - 9.60649682395 32 0.922844186313 5.39305620641 4.21344061755 chr3:49119023-49119241- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;49119145;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A49119146-49119241-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A49119146-49119241&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.05034048722 0.931978981996 0.856822135739 49156579 49156674 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;49156578;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A49119146-49119241-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A49156579-49156674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAKIAGPGRKRRSPDPDAVADPGALWLSTKRLK Same 696799 chr3:49119146-49119241- 738 738 44 0 525 49108464 49120972 Best 782 782;6927;11608;22914;38563 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:49108464-49120972&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.656891495601 9.990053125 0.9926 7.0498875 2.940165625 0.744634841998 0.654613623121 1900 Best 1900 1900;11326;19488;30342;47390 18.510803125 0.908 8.602215625 9.9085875 0.799616521939 0.829111456482 2475 Best 2475 2475;12326;33524;38234;67129 0.0 0.0 ENST00000306026.5,ENST00000465902.1 Extension5p,NC under investigation USP19 potential non-ATG start 783 503243 chr14:20435395-20435628- NoOverlap chr14 20435395 20435628 - 11.828576952 78 0.850925811809 3.61606409038 8.21251286165 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;20435394;234;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20435395-20435628-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A20435395-20435628&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.963429218559 0.931847437597 1.02959010747 20903554 20903787 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;20903553;234;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20435395-20435628-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A20903554-20903787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPSFPLEEPGSRPLVPRNLPFPALSLEEEEEEEEDEDAAEPEWLRSEEHPSQFFAEAQRLREQRLLLDEEVSVAGRVYGVHRVILAAISSLFR Same 505114 chr14:20435395-20435628- 720 720 63 0 178 20430676 20435763 215 215;783;1136;1201;3984;5029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:20430676-20435763&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.615384615385 0.789285714286 17.2338128205 0.9826 3.64656153846 13.5872512821 0.938898002327 1.01329218796 1148 70 70;912;1148;1271;2133;9110 22.2628782051 0.5448 2.16141153846 20.1014666667 0.991208801341 1.04176730038 1258 412 412;1247;1258;1543;1777;8205 0.0 0.0110418299684 chr1:6601797-6602817- ENST00000344581.4 UTR5 coding exon(s) KLHL33 alternative first exon 784 572516 chr6:109257544-109257630+ NoOverlap chr6 109257544 109257630 + 8.08252421664 29 0.83990234226 0.410651919143 7.67187229749 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109257543;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109257544-109257630%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109257544-109257630&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.943582602676 0.931806520049 1.04998795781 109578747 109578833 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109578746;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109257544-109257630%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109578747-109578833&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NCHLLFFSSSPASKNVYLLEFHPSLSLAALIPKALEHLFQEACHACRPTSASGLASLER Same 573543 chr6:109257544-109257630+ 709 709 75 0 198 109254451 109270128 241 241;379;398;784;1262;1279;1591;1821;4627;6101 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109254451-109270128&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.51724137931 0.0 12.0939586207 0.9616 -2.76186551724 14.8558241379 1.01595357066 1.02152303124 609 103 103;138;267;470;609;712;856;2049;2971;3012 19.8342862069 0.7649 -8.29932758621 28.1336137931 1.03848980652 1.03330484928 499 235 235;262;499;654;818;864;1043;1677;1862;2261 0.0 0.0 ENST00000453496.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 785 532086 chr19:55463745-55463966- NoOverlap chr19 55463745 55463966 - 6.61595132192 74 0.607550122794 1.39313506718 5.22281625474 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;55463744;222;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A55463745-55463966-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A55463745-55463966&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.903127419672 0.931597791657 1.02558024183 55975112 55975333 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;55975111;222;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A55463745-55463966-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A55975112-55975333&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QFTKIEAATQRLALSILSQEAPPQRPSLQKPPPPPPSPFLGVACAVAPTEAPHASASLSLAALDTSTLDLFDNIALTPECASMPWDPSSGSDAPLPAPGLSHR Same 533564 chr19:55463745-55463966- 747 747 38 0 259 55463745 55464557 337 337;785 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:55463745-55464557&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.648648648649 0.295474711624 10.7142851351 0.8701 0.0909567567568 10.6233283784 1.0075795609 1.05175154779 669 Best 669 669;963 11.3121945946 0.4116 -2.76559594595 14.0777905405 0.832590177103 1.00087393279 2380 50 50;2380 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283567 786 508668 chr15:43569177-43569338- NoOverlap chr15 43569177 43569338 - 6.62262776094 54 0.883210554722 1.70407595568 4.91855180526 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;43569176;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A43569177-43569338-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A43569177-43569338&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.978225161705 0.931556854789 0.998236811454 43861375 43861536 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;43861374;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A43569177-43569338-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A43861375-43861536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQVMNMQCTGNLDLIPLRGRRCRRSGDLPQPSLAIGLQPRAVSTTHLASCTQVSLPTSPSCLAFCLCLLGSR Same 510392 chr15:43569177-43569338- 708 708 78 0 526 43564090 43569338 Best 786 786;46415 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:43564090-43569338&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.654320987654 0.354098360656 2.74919444444 0.9982 -3.49080740741 6.24000185185 0.610136735203 0.989562321336 2484 Best 2484 2484;69909 2.75937962963 0.4966 -5.23090925926 7.99028888889 0.438221357109 0.841674766715 3794 Best 3794 3794;41387 0.0 0.0 ENST00000432870.7,ENST00000334933.8 NC,CDSintron coding exon(s) PPIP5K1 cassette exon 787 502613 chr14:96086508-96086732+ NoOverlap chr14 96086508 96086732 + 16.6852786541 75 0.851547824318 8.13395326157 8.55132539252 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;96086507;225;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A96086508-96086732%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A96086508-96086732&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.987503968455 0.931467943708 0.993519682518 96552845 96553069 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;96552844;225;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A96086508-96086732%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A96552845-96553069&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHVGLFDQTTSLLQGTSAQAPMALDNSLSPSLQLPMMGGAFMDSPNEDFSTEYSLFNSSANVHAAANGQGQPEDPPRSSNDAVLLWIAIIATLGNIVVVGVVYAFTF Same 504516 chr14:96086508-96086732+ 729 729 58 0 527 96086221 96086732 Best 787 787;62264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:96086221-96086732&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.595555555556 0.653923541247 22.3153626667 0.9293 12.029436 10.2859266667 0.962584705122 1.01260786932 1017 Best 1017 1017;31442 42.5748373333 0.8876 18.8317626667 23.7430746667 0.982828365016 1.00773590634 1382 Best 1382 1382;34300 0.0 0.0 ENST00000553764.1 NC protein-coding gene protein-coding gene ENSG00000227051 788 549340 chr22:50694774-50695001+ NoOverlap chr22 50694774 50695001 + 16.3990698232 76 0.82750137532 8.42901978054 7.97005004268 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50694773;228;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50694774-50695001%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50694774-50695001&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.98518048753 0.931377499677 1.00126775265 51133202 51133429 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51133201;228;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50694774-50695001%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51133202-51133429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLVLTSGKPGQTGQVGHPAGCSESYLCPLTPVPFRETPSYAKRRRLAGPSGLASPRPLQRSASDINLKGEAQPAASPGPSLRSLPHQLLLQRLQEEKDRDRDADQESNISGPLAGR None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.649122807018 0.501098901099 25.1035657895 0.976 13.6300131579 11.4735526316 0.975002506289 1.00216861042 932 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 44.7160223684 0.8337 19.1386842105 25.5773381579 0.976220610097 1.0051983166 1495 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.141502679404 chr19:50703500-50703830- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 789 563851 chr5:35787955-35788467+ NoOverlap chr5 35787955 35788467 + 12.4353736509 171 0.942263073569 1.37559242181 11.0597812291 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;35787954;513;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35787955-35788467%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A35787955-35788467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.995172749353 0.93119084369 0.98726796756 35788057 35788569 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;35788056;513;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35787955-35788467%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A35788057-35788569&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHQFLKIWLKKYPWLIYDELLNLMFCALCRKHGVKSGGSQVNFFYGTDNFRTEFLNAHHLSEAHAKASLMEATSSSPVNRATTKLMMRTMSKVTLGRVENLFRSCHAIAKTGRPLKDFIWMCKLDDMKGVDIGPVFRTKKSARMFTYFIAEVERKNLREKLEKSKFFSVISDGIIDSLIK Same 564839 chr5:35787955-35788467+ 718 718 71 0 24 35787955 35790367 24 24;33;42;72;207;789;797;872;1069;2173;48626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:35787955-35790367&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.380116959064 0.38137213254 16.8100561404 0.9959 1.9998877193 14.8101684211 0.938598667018 1.02621954091 1150 20 20;37;72;448;957;1150;1273;1329;1548;1888;12605 23.1401116959 0.623 -0.798189473684 23.9383011696 1.03567230701 1.03784983193 544 77 77;86;112;376;544;1371;1761;1786;2084;2608;14924 0.0 0.0 ENST00000506526.5,ENST00000356031.7,ENST00000513078.1,ENST00000510433.1 NC,CDSintron,NCintron,AntiNCintron coding exon(s) SPEF2 5 consecutive coding exons including an alternative termination codon 790 479230 chr10:122749907-122749990+ NoOverlap chr10 122749907 122749990 + 12.2042676759 28 0.667745697501 4.765800078 7.43846759785 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122749906;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122749907-122749990%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122749907-122749990&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.953614158441 0.930897887458 1.02764769224 124509423 124509506 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124509422;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122749907-122749990%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124509423-124509506&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EISLSPEASPSTSPLCAFPVAWMEVRLLNGTGRCSGRVEVLVQGTWRTVCCVTTSGIWPRPLSCAASYSVDGLWQPQQGLTSGQALGK Same 481135 chr10:122749907-122749990+ 762 762 28 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.4375 21.1346285714 0.8402 9.54385 11.5907785714 0.94729305297 1.03931071251 1105 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 72.4472 0.8979 17.4186285714 55.0285714286 0.964869352755 1.04282932403 1633 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.0427213140654 chr10:122630961-122631281+ 0.172297721093 chr11:61007560-61007910+ pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 791 485480 chr11:73343137-73343223+ NoOverlap chr11 73343137 73343223 + 7.47033453193 29 0.79506186481 -1.18365523508 8.65398976701 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;73343136;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A73343137-73343223%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A73343137-73343223&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.867971739307 0.930855780225 1.05542917355 73054182 73054268 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;73054181;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A73343137-73343223%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A73054182-73054268&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAGRMLQMVKTLAQFTIALEDMRDMGPAAASGEPAGGSSTDAEEPGEAQVR Same 487436 chr11:73343137-73343223+ 733 733 58 0 528 73343137 73343277 Best 791 791;52279 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:73343137-73343277&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.727598566308 8.44870689655 0.9119 -1.00192413793 9.45063103448 0.78729240083 1.04355082201 1718 Best 1718 1718;4271 17.8525275862 0.6738 -2.65944137931 20.5119689655 1.01658040723 1.04730901342 827 Best 827 827;16601 0.0 0.0 ENST00000536170.1,ENST00000263674.3 NC,CDSintron coding exon(s) ARHGEF17 alternative first exon 792 565155 chr5:122373588-122373812+ NoOverlap chr5 122373588 122373812 + 10.2932465957 75 0.951575595738 1.25185605268 9.04139054303 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;122373587;225;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122373588-122373812%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A122373588-122373812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.968696946904 0.930776067584 1.01036327812 121709283 121709507 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;121709282;225;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122373588-122373812%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A121709283-121709507&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFYSTRRCITGHLQTSFLLIFNLIFVHLIKNLVVNVMKIVYSSGIILDSAGCKVLCFTSALTTSLAICFMLHFALLYHWK Same 566146 chr5:122373588-122373812+ 696 696 96 0 83 122373512 122374412 96 96;483;792;813;893;6475 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:122373512-122374412&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.36 0.0 12.087892 0.9989 2.11734666667 9.97054533333 1.01300613985 1.0510059501 628 592 592;628;689;1305;1845;2458 10.251204 0.6681 -6.42444266667 16.6756466667 0.926870037602 1.04811878155 1963 1664 1664;1963;2350;2533;2860;3772 0.0 0.0 ENST00000261367.11,ENST00000508017.5,ENST00000507143.1 UTR5intron,NCintron,AntiNCintron pseudo-exon SNCAIP untranscribed pseudo-exon. Subsequent reanalysis following the completion of this study suggests it may in fact be an ancient vomeronasal receptor unitary pseuodgene. 793 685526 chr20:63572386-63572568- Extension chr20 63572386 63572568 - 5.12499833229 61 0.544816622828 -2.12359833522 7.24859666751 chr20:63572326-63572568- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;63572385;183;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A63572386-63572568-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A63572386-63572568&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.562401012538 0.93054596207 1.06173529341 62203739 62203921 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;62203738;183;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A63572386-63572568-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A62203739-62203921&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VDPQGQCPEHGACPSLLAHVSAEGRRKQQFVVVRPRPRAGQPPAYCRFVGRGQPCWRGESRCQFAHSAVEMAVWEAEQLGGLQR Same 686118 chr20:63572386-63572568- 848 848 -55 0 67 63572386 63573033 75 75;793;4382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:63572386-63573033&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.726775956284 0.663043478261 16.5051622951 0.8105 1.14606229508 15.3591 1.0353672953 0.967651127022 412 Best 412 412;1289;1593 32.4698114754 0.8763 -7.78344262295 40.2532540984 0.995263109906 0.953655537879 1190 655 655;1111;1190 0.0 0.0202427554518 chr9:136840485-136840968+ ENST00000467148.1,ENST00000370082.1 Extension5p,NC pseudo-exon HELZ2 pseudo-exon 794 493948 chr12:132509802-132509915+ NoOverlap chr12 132509802 132509915 + 3.45537100183 38 0.716515481884 -6.57725782457 10.0326288264 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132509801;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509802-132509915%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132509802-132509915&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.282560745534 0.930479854176 1.02002145491 133086388 133086501 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;133086387;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509802-132509915%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A133086388-133086501&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SRPLWSLLAQCQRYQPPRPLLTLRPRRRPASFLPGQCCCPRRAFLAPCQYGQPR Same 495939 chr12:132509802-132509915+ 753 753 41 0 98 132509173 132510440 116 116;202;637;794;2162;3860;16489;25303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132509173-132510440&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.754385964912 0.746428571429 11.1348526316 0.8624 -5.88551315789 17.0203657895 1.06871165084 0.943042193549 93 6 6;93;263;1110;1440;2944;5926;7480 8.65541052632 0.5592 -10.4191894737 19.0746 0.921608548998 1.07216846934 2003 Best 2003 2003;2026;2435;2663;4003;7601;8523;55779 0.0 0.151046093911 chr7:72941837-72943522+ ENST00000542061.2,ENST00000434748.2 NC,CDSintron coding exon(s) FBRSL1 alternative final coding exon 795 572943 chr6:138382515-138382721+ NoOverlap chr6 138382515 138382721 + 9.44466660679 69 0.809503495753 -0.802513100099 10.2471797069 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;138382514;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A138382515-138382721%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A138382515-138382721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.994423195431 0.930233701204 0.968483537803 138703652 138703858 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;138703651;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A138382515-138382721%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A138703652-138703858&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQGTQGVSSTQEDVEPFLCILLPATILLFLAFLLLFLYRRCKSPPPQGQVFSIDLPEHPPAGEVTDLLPGLAWSSEDFPYSPLPPEATLPSQCLPPSYEEATR Same 573970 chr6:138382515-138382721+ 706 706 89 0 176 138378073 138382799 212 212;795;7360 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:138378073-138382799&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.63768115942 0.243186090226 18.1924289855 0.9566 2.11856086957 16.0738681159 0.922327726641 0.972750930431 1225 110 110;1225;2507 30.8316347826 0.594 4.08594492754 26.7456898551 0.9008780323 1.03325397315 2101 598 598;2101;2478 0.0 0.0 ENST00000573100.1 NC protein-coding gene protein-coding gene ENSG00000262543 796 573142 chr6:150686873-150686956+ NoOverlap chr6 150686873 150686956 + 19.6815037046 28 0.878933830341 0.516174963542 19.1653287411 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;150686872;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A150686873-150686956%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A150686873-150686956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.997631522194 0.93010854638 1.07336889028 151008009 151008092 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;151008008;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A150686873-150686956%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A151008009-151008092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDHGDLGSMLPAAMVGALVRGWRNRSSPQRAESKLLIRPSQDGIAIQGMFDTLM Same 574170 chr6:150686873-150686956+ 713 713 83 0 529 150686873 150686956 Best 796 796 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:150686873-150686956&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52380952381 0.183006535948 30.50865 0.9944 9.62197142857 20.8866785714 1.034455913 1.04140216869 426 Best 426 426 30.9752321429 0.3774 8.96768928571 22.0075428571 0.978208071252 1.0365459579 1452 Best 1452 1452 0.0 0.0 ENST00000367326.1 UTR5intron coding exon(s) PLEKHG1 alternative first exon 797 563852 chr5:35788498-35788686+ NoOverlap chr5 35788498 35788686 + 9.38997294647 63 0.927371899906 -1.93234918231 11.3223221288 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;35788497;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35788498-35788686%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A35788498-35788686&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.98911810569 0.930042857114 0.935966233054 35788600 35788788 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;35788599;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35788498-35788686%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A35788600-35788788&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAELVYVQFAHAGKVHCQIVGVQIVERNDPLAIKNAIEKTLEINLQLRLSSQDWAKKLVGFGSDGTHSIEGENNEVALLLR Same 564840 chr5:35788498-35788686+ 736 736 61 0 24 35787955 35790367 24 24;33;42;72;207;789;797;872;1069;2173;48626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:35787955-35790367&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.417989417989 0.128571428571 12.595615873 0.9958 -2.52703968254 15.1226555556 0.971246814558 0.959790835826 957 20 20;37;72;448;957;1150;1273;1329;1548;1888;12605 20.3924968254 0.6795 -5.69145396825 26.0839507937 0.983263759544 1.024179724 1371 77 77;86;112;376;544;1371;1761;1786;2084;2608;14924 0.0 0.0 ENST00000506526.5,ENST00000356031.7,ENST00000513078.1,ENST00000510433.1 NC,CDSintron,NCintron,AntiNCintron coding exon(s) SPEF2 5 consecutive coding exons including an alternative termination codon 798 513111 chr16:3031428-3031502- NoOverlap chr16 3031428 3031502 - 11.0503120136 25 0.784997940032 -0.837743968964 11.8880559826 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3031427;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3031428-3031502-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3031428-3031502&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.938681229212 0.929618712764 1.01356415582 3081429 3081503 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3081428;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3031428-3031502-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3081429-3081503&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGTQQVCAAMGRGLNSARLRRQKRRLRPQVQKPR Same 514760 chr16:3031428-3031502- 770 770 28 0 530 3020296 3031502 Best 798 798;49233;73359 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3020296-3031502&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.64 0.651041666667 15.540896 0.9876 -0.092208 15.633104 1.02833690385 1.02487203654 497 Best 497 497;36757;60541 17.690004 0.471 -1.779872 19.469876 0.92819839107 1.03037005394 1950 Best 1950 1950;24117;45755 0.0 0.120413993014 chr19:50281594-50281842+ ENST00000573514.5,ENST00000572240.5,ENST00000389347.4,ENST00000576826.1 UTR5,NC,CDSintron,NCintron coding exon(s) CCDC64B cassette exon 799 494108 chr12:3306764-3306868- NoOverlap chr12 3306764 3306868 - 10.5162942807 35 0.504812041548 2.85621710931 7.66007717135 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3306763;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3306764-3306868-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3306764-3306868&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.811591684075 0.929309565355 1.05412445649 3415930 3416034 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3415929;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3306764-3306868-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3415930-3416034&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CHLITPQLSDEQKQHLSQTLTKNCGQARATQIPASVDRLQQEVHHALWP Same 496103 chr12:3306764-3306868- 836 836 -37 0 531 3298233 3307795 Best 799 799;1890;3339;6900;15956;21198;23499 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3298233-3307795&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.590476190476 0.327783558793 21.5810114286 0.9769 5.61090285714 15.9701085714 1.03502414514 1.0176411526 419 197 197;419;1376;1520;1852;2555;9275 34.79624 0.7169 7.92079428571 26.8754457143 1.01129472639 1.05070857609 924 223 223;711;903;924;1207;1939;10886 0.87258497072 chr12:30979566-30979670+ 0.914976401415 chr12:30979566-30979670+ pseudogene tetraspanin 11 (TSPAN11) pseudogene (ENSG00000250770); single locus on multiple rows 800 583397 chr8:11362895-11362972+ NoOverlap chr8 11362895 11362972 + 19.202353881 26 0.927454501705 12.466223084 6.73613079695 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;11362894;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A11362895-11362972%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A11362895-11362972&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.970027014417 0.929182881167 0.885445192295 11220404 11220481 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;11220403;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A11362895-11362972%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A11220404-11220481&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IFVFEYVFSFSWYYHYRYGLDF*CLRYPGIISADSQPGGGTTG Same 584325 chr8:11362895-11362972+ 752 752 48 7 281 11362895 11365716 367 367;698;800 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:11362895-11365716&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.487179487179 0.218487394958 24.3673076923 0.9109 12.9035769231 11.4637307692 0.972484997745 1.00992073306 950 452 452;906;950 72.4096807692 0.9683 38.6553153846 33.7543653846 0.988560180899 0.966678183189 1297 1182 1182;1297;1732 0.0 0.0 ENST00000525664.1,ENST00000525246.5 NC,NCintron pseudogene extension TDH pseudogene extended by 2 exons (ENSG00000154316) 801 477980 chr10:80634284-80634508+ NoOverlap chr10 80634284 80634508 + 16.3349412707 75 0.854834414181 7.91648797194 8.41845329881 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;80634283;225;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A80634284-80634508%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A80634284-80634508&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.982884792753 0.928601252943 0.997584377096 82394040 82394264 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;82394039;225;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A80634284-80634508%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A82394040-82394264&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGIISREDAEALLENMTEGAFLVRVSEKIWGYTLSYRLQKGFKHFLVDASGDFYSFLGVDPNRHATLTDLVDFHKVSLTGILMGGR Same 479874 chr10:80634284-80634508+ 740 740 61 0 482 80634284 80644070 711 711;801 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:80634284-80644070&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.506666666667 0.486111111111 21.7749146667 0.9913 11.3379133333 10.4370013333 0.94518789448 1.0155848844 1113 417 417;1113 44.6806 0.8406 21.0958906667 23.5847093333 0.974655185706 1.00096045682 1515 303 303;1515 0.0 0.129325042604 chr8:19393318-19393541+ ENST00000313455.5,ENST00000372150.7 CDSintron,NCintron coding exon(s) SH2D4B cassette exon 802 483234 chr11:1085067-1085324+ NoOverlap chr11 1085067 1085324 + 10.7265581425 86 0.727003145843 0.254033768939 10.4725243736 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1085066;258;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1085067-1085324%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1085067-1085324&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02652289176 0.928499495581 1.00414483118 1083063 1083320 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1083062;258;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1085067-1085324%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1083063-1083320&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LALPVPHTTPWSSADKDVGSCPNSQVFLYNLTTCQQTCRSLSEADSHCLEGFAPVDGCGCPDHTFLDEKGRCVPLAKCSCYHRGLYLEAGDVVVRQEERWWVPAR Same 485164 chr11:1085067-1085324+ 773 773 29 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.65503875969 0.616877637131 21.6648662791 0.9139 1.97510232558 19.6897639535 0.989482431451 1.02781095922 836 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 43.9946197674 0.9401 1.49571395349 42.498905814 1.01609432132 1.02024635744 834 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0835665795955 chr11:1174882-1175137+ 0.286008640505 chr11:1174882-1175137+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 803 539928 chr2:112440491-112440583- NoOverlap chr2 112440491 112440583 - 6.07106130738 31 0.743631696434 -3.37817428189 9.44923558927 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;112440490;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A112440491-112440583-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A112440491-112440583&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.691495217352 0.927796915972 1.0411404027 113198068 113198160 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;113198067;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A112440491-112440583-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A113198068-113198160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EMESFLLDDISSVIQNKGIERIISPMIVQLCHLLISMER Same 541289 chr2:112440491-112440583- 760 760 43 0 532 112440419 112440583 Best 803 803;7587 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:112440419-112440583&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.440860215054 0.222488038278 9.6443 0.8849 -5.41925483871 15.0635548387 0.966195907044 1.00848128758 994 Best 994 994;2324 11.6083967742 0.5203 -6.9004 18.5087967742 0.912002883555 1.0492562091 2046 Best 2046 2046;2966 0.0 0.0 pseudogene unitary pseudogene ENSG00000283698 804 579708 chr7:142791807-142791878+ NoOverlap chr7 142791807 142791878 + 12.0575208195 24 0.923347575087 1.3264043058 10.7311165137 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142791806;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142791807-142791878%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142791807-142791878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.944274958805 0.927367498726 1.04080770158 142498838 142498909 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142498837;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142791807-142791878%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142498838-142498909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATLVCLATGFFPDHVELSWWVNGKEVHSGVSTDPQPLK None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.409867172676 17.2508625 0.9773 0.123354166667 17.1275083333 1.02036137648 1.00784790001 570 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 21.4626791667 0.5776 -4.86200416667 26.3246833333 1.03464861154 1.05433619308 567 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.0 ENST00000610416.2,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 805 469797 chr1:2800273-2800458- NoOverlap chr1 2800273 2800458 - 9.55695804833 62 0.761248237214 -4.05580482067 13.612762869 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;2800272;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A2800273-2800458-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A2800273-2800458&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01535365146 0.927040090936 0.946368154822 2716838 2717023 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;2716837;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A2800273-2800458-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A2716838-2717023&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HEEVVQRCSALLDSHAQQVLELRLTRALAWVLSGVQAADGVAAYLQAFASSADRTVAFIRTHQRPHLPALLSALQDYLSGHPEAGHSAGQQETGGQR Same 471679 chr1:2800273-2800458- 726 726 79 0 48 2789592 2800821 54 54;238;634;805 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:2789592-2800821&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.704301075269 0.711961722488 19.6231145161 0.9248 -3.26004354839 22.8831580645 0.987405848278 1.04319706833 852 149 149;159;806;852 29.547383871 0.6484 -10.1996258065 39.7470096774 0.929363312397 0.938418438428 1943 240 240;868;964;1943 0.0 0.0740645531262 chr8:144527342-144527787- ENST00000401094.9 NCintron coding exon(s) TTC34 5' extension 806 488612 chr11:66718423-66718632- NoOverlap chr11 66718423 66718632 - 10.2982657871 70 0.825411503123 0.865035679724 9.43323010738 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;66718422;210;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66718423-66718632-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A66718423-66718632&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.972375527601 0.926923974824 0.994438248913 66485894 66486103 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;66485893;210;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66718423-66718632-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A66485894-66486103&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAAGSMNGNGVSRVHGNGLHEASEFYYEAVEGAHNPGGLLLSPAAFINPAQYASVLEGRFKQLQGEARGPPVGTTVPGR Same 490600 chr11:66718423-66718632- 722 722 84 0 533 66718423 66728928 Best 806 806;4911;26982;44139;59450;60343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:66718423-66728928&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62380952381 0.394366197183 11.3245785714 0.8534 -0.83563 12.1602085714 1.01756804959 1.02637443465 593 Best 593 593;16712;20471;28103;45869;62074 16.3062657143 0.6116 -2.62377428571 18.93004 1.0018085107 1.04756464177 1083 Best 1083 1083;7192;12271;30758;47247;67889 0.0 0.0 ENST00000309996.6 CDSintron coding exon(s) SPTBN2 alternative first coding exon. 807 566050 chr5:148366071-148366142+ NoOverlap chr5 148366071 148366142 + 14.0539874149 24 1.0 0.842241515716 13.2117458992 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;148366070;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A148366071-148366142%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A148366071-148366142&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.928173756613 0.92691795875 1.01730654123 147745634 147745705 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;147745633;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A148366071-148366142%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A147745634-147745705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HICSMKVSPLCASNNIINPNS*VYCFLICK Same 567045 chr5:148366071-148366142+ 678 678 129 4 534 148366071 148366142 Best 807 807 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:148366071-148366142&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.375 0.0 20.1633208333 0.9688 4.84317916667 15.3201416667 1.01464017616 1.03544502139 617 Best 617 617 20.5825458333 0.3442 2.05099166667 18.5315541667 0.817611897807 1.00581906515 2422 Best 2422 2422 0.0 0.0 ENST00000501695.3 AntiNCintron pseudogene serine peptidase inhibitor, Kazal type 6 (SPINK6) pseudogene (ENSG00000283653) 808 486539 chr11:125950013-125950294+ NoOverlap chr11 125950013 125950294 + 4.77808933608 94 0.63241892833 -1.33085311101 6.10894244709 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125950012;282;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125950013-125950294%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125950013-125950294&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.731331450838 0.926879765436 1.04800742214 125819908 125820189 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125819907;282;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125950013-125950294%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125819908-125820189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWGGVTGLPCSPDGPDKPVITMEPLGLTEEGFWASEREEVTLSCLAASNPPSHYVWLRDHTQVHTGPTYVIARAGRVHTGLYTCLARNSYLDTRTQTTVQLTIYCECGGR Same 488501 chr11:125950013-125950294+ 653 653 155 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.609929078014 0.308407382092 12.0181797872 0.8097 0.683654255319 11.3345255319 1.01720919834 1.05315895779 595 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 33.1477744681 0.8005 0.425235106383 32.7225393617 1.00627547285 1.041652408 1007 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0637271962269 chr19:51340015-51340299- ENST00000529072.1 NC protein-coding gene protein-coding gene ENSG00000283703 809 517325 chr17:39402672-39402701+ NoOverlap chr17 39402672 39402701 + 6.88852988482 10 0.933633936065 -11.5992799282 18.487809813 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;39402671;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A39402672-39402701%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A39402672-39402701&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0752426109681 0.926629219656 0.96246187453 37558925 37558954 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;37558924;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A39402672-39402701%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A37558925-37558954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RHFGGRNKRV Same 518721 chr17:39402672-39402701+ 827 827 -18 0 535 39402672 39410654 Best 809 809;14508;23729;24139;52387 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:39402672-39410654&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.566666666667 1.36363636364 2.66726 0.9732 -19.40362 22.07088 0.282511743799 0.946680437862 6041 Best 6041 6041;10767;32183;36588;67635 0.40661 0.484 -27.87515 28.28176 0.290977498248 1.07134805692 4722 Best 4722 4722;27606;32663;35437;64135 0.0 0.0 ENST00000582842.1 NCintron not annotated putative regulatory region 810 495350 chr12:52729520-52729639- NoOverlap chr12 52729520 52729639 - 6.6517475374 40 0.473960097658 -3.51658753771 10.1683350751 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52729519;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52729520-52729639-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52729520-52729639&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.466714117771 0.92647843905 0.993173220852 53123304 53123423 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;53123303;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52729520-52729639-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A53123304-53123423&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AELSLCLQEYNQLLSESNDMSVILSLDNNWHLDLESIIAEVHAQYEEIALGY Same 497348 chr12:52729520-52729639- 900 900 -90 0 536 52721165 52729639 Best 810 810;1910;17559;33017;63856 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52721165-52729639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.535714285714 16.61533 0.8186 -5.3423875 21.9577175 1.07277581015 0.962600791339 67 Best 67 67;82;632;969;1304 39.206125 0.6094 -5.5037075 44.7098325 1.0222741257 0.946701197313 749 120 120;301;726;749;1933 0.465881896283 chr12:52792239-52792403- 0.280060461093 chr12:52548152-52548316- pseudogene extension KRT125P (ENSG00000258036) and KRT126P (ENSG00000257402) extended, i.e. two distinct keratin pseudogenes within the same genomic window 811 557798 chr3:184500089-184500151- NoOverlap chr3 184500089 184500151 - 5.42107148398 21 0.815494446806 -7.95348104976 13.3745525337 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;184500088;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184500089-184500151-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A184500089-184500151&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.411283095975 0.926391921768 0.953150502078 184217877 184217939 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;184217876;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184500089-184500151-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A184217877-184217939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFYPSGVNRLMVVDWEDPRWPFVFK Same 558769 chr3:184500089-184500151- 683 683 128 0 22 184499610 184500370 22 22;541;811;1939;2622;7155;17966 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:184499610-184500370&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.571428571429 0.818181818182 14.8609047619 0.9906 -8.65558095238 23.5164857143 0.962868597964 0.967804009294 1016 35 35;97;1016;1294;1807;1985;2257 19.5988333333 0.4765 -9.47728571429 29.0761190476 0.909548920486 1.04259282484 2057 17 17;96;2057;2581;2827;2852;3634 0.0 0.265950514485 chr1:182399664-182400485- ENST00000444495.1 AntiCDSintron pseudogene transmembrane epididymal protein 1 (TEDDM1) pseudogene (ENSG00000283625) 812 536869 chr2:219271893-219272093+ NoOverlap chr2 219271893 219272093 + 8.34917168141 67 0.63605319705 4.31989550691 4.02927617451 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;219271892;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219271893-219272093%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A219271893-219272093&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02334790129 0.926364768568 0.956422911121 220136615 220136815 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;220136614;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219271893-219272093%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A220136615-220136815&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PGKVQRAMCMLSNMTAITMAWARLDHKFDLMYAKRAFGH*YVGEGMEEGEFSKAHEDMTALEKDYKEVGMDSVEWGEEK Same 538237 chr2:219271893-219272093+ 755 755 57 28 220 219269630 219279492 274 274;812;10599;20617;42437;70571 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:219269630-219279492&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.55223880597 0.208074534161 13.3270507463 0.9734 5.54950597015 7.77754477612 1.02909313578 1.02289092057 491 408 408;491;1561;1860;15870;51627 47.7117701493 0.9915 21.9644059701 25.7473641791 0.973759480087 1.00288103595 1527 1012 1012;1034;1527;1616;16190;55697 0.351563880398 chr2:219250352-219251323- 0.369328538352 chr12:49272253-49273227+ ENST00000490341.2,ENST00000473885.5,ENST00000398989.2 UTR3,NC,AntiUTR5intron pseudo-exon TUBA4B pseudo-exon 813 565159 chr5:122374152-122374286+ NoOverlap chr5 122374152 122374286 + 5.41223777533 45 0.92570110967 -1.75470226076 7.16694003608 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;122374151;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122374152-122374286%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A122374152-122374286&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.841137734745 0.925662147975 1.06163478574 121709847 121709981 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;121709846;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122374152-122374286%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A121709847-121709981&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IFFVLIDILSLAILVFVCFWMSFLLSERKKMTYGDIWIGDDDSEIEILRGAKFSILLMLLITPLWISHFILVCFLK Same 566150 chr5:122374152-122374286+ 775 775 38 0 83 122373512 122374412 96 96;483;792;813;893;6475 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:122373512-122374412&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.362962962963 0.0 5.37213111111 0.9984 -1.11216444444 6.48429555556 0.754557085751 0.989802641721 1845 592 592;628;689;1305;1845;2458 7.7006 0.6312 -6.16554 13.86614 0.785147823501 1.00263711655 2533 1664 1664;1963;2350;2533;2860;3772 0.0 0.0 ENST00000261367.11,ENST00000508017.5,ENST00000507143.1 UTR5intron,NCintron,AntiNCintron pseudo-exon SNCAIP untranscribed pseudo-exon. Subsequent reanalysis following the completion of this study suggests it may in fact be an ancient vomeronasal receptor unitary pseuodgene. 814 510482 chr16:3144184-3144294+ NoOverlap chr16 3144184 3144294 + 4.03841885361 37 0.897382665339 -5.39561347945 9.43403233306 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3144183;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144184-3144294%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3144184-3144294&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.525872647433 0.925483468329 1.0389783135 3194185 3194295 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3194184;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144184-3144294%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3194185-3194295&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QEAPPSPAAPASLLSPSPAQPSPALALPPQGKYDVQGPRAALMLSSPGVAAAVVTALEDVFQALGFESCER Different 646003 chr16:3144184-3144216+ 1288 1288 -474 0 256 3144015 3150751 334 334;814;1899;3328;3506;5705;11798;14824;15461;50287;55094 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3144015-3150751&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.657657657658 0.341013824885 5.04101081081 0.9937 -8.60972972973 13.6507405405 0.93097035582 1.04916410447 1186 167 167;1186;1262;1661;1809;1880;2134;2541;2601;5815;43459 -1.14751081081 0.5644 -20.9520783784 19.8045675676 0.670258558193 1.11480617401 2930 1889 1889;2882;2930;3314;3490;3499;6163;6623;16490;31726;59008 0.0 0.100788177915 chr10:94350113-94350288- ENST00000428155.1,ENST00000571356.5 UTR5,NC pseudogene extension CASP16P pseudogene extended (ENSG00000228146) 815 475503 chr1:204377576-204377671- NoOverlap chr1 204377576 204377671 - 10.6389312567 32 0.739582379644 5.95668454655 4.68224671017 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204377575;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204377576-204377671-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204377576-204377671&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02495839379 0.925085659569 0.898565441739 204346704 204346799 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204346703;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204377576-204377671-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204346704-204346799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DTEMADEIDWLDLPGRWAYGVDGGGRIFFIKYVGLALLFISFFSIK Same 477388 chr1:204377576-204377671- 757 757 58 0 537 204359879 204378165 Best 815 815;1426;2477;10157;27979;29433;67476 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204359879-204378165&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.898395721925 17.46215625 0.9082 9.124159375 8.337996875 1.00563981656 0.991588473715 683 Best 683 683;986;1894;9248;41567;43122;51633 25.3759625 0.501 10.100475 15.2754875 1.0624909211 0.958600009441 208 Best 208 208;1881;2415;9734;19689;34362;42976 0.0 0.128338210181 chr12:19129800-19129888+ ENST00000564627.1 NC not annotated putative regulatory region 816 660274 chr17:67993147-67993236- Extension chr17 67993147 67993236 - 13.1416634003 30 0.572262149996 5.6475633045 7.49410009583 chr17:67993039-67993236- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;67993146;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A67993147-67993236-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A67993147-67993236&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.915171128895 0.924481612132 1.03250598402 65989263 65989352 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;65989262;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A67993147-67993236-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A65989263-65989352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSSPNCFSEAAVNGIVHDVDVLGAGIRLVTLLVDRDGLYK Same 660896 chr17:67993147-67993236- 783 783 33 0 538 67993147 67996207 Best 816 816;971;14397;15782;34535 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:67993147-67996207&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.677777777778 1.07142857143 21.6560966667 0.9409 7.98304333333 13.6730533333 1.02439463614 1.04937785167 535 Best 535 535;740;4772;6794;48625 46.53487 0.8271 5.48924333333 41.0456266667 1.00976995743 0.997972916849 946 Best 946 946;1766;4259;11308;63387 0.0 0.0 ENST00000334461.7 Extension5p coding exon(s) C17orf58 alternative 5' extension 817 483246 chr11:1090763-1090891+ NoOverlap chr11 1090763 1090891 + 6.23269305396 43 0.551341463198 -1.89670464604 8.1293977 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1090762;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1090763-1090891%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1090763-1090891&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.579556337646 0.924135557394 1.05126241981 1088699 1088827 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1088698;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1090763-1090891%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1088699-1088827&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WSQPYALCPPGCYPRCPKDRPIYEEDLKKCVTADKCGCYVEDTHYPPGASVPTEETCK Same 485176 chr11:1090763-1090891+ 882 882 -65 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.596899224806 0.262195121951 17.1690395349 0.8916 -1.5988372093 18.7678767442 1.05098228833 0.942080835516 250 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 35.5280697674 0.9014 -7.57524651163 43.1033162791 1.0005261517 0.937028606821 1106 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0936869952274 chr11:1180354-1180516+ 0.313576685195 chr11:1180354-1180516+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 818 534416 chr2:97701174-97701245+ NoOverlap chr2 97701174 97701245 + 10.9263334001 24 0.815503166247 -4.1629166007 15.0892500008 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;97701173;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A97701174-97701245%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A97701174-97701245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.924958488831 0.924123787434 0.966537999468 98317637 98317708 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;98317636;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A97701174-97701245%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A98317637-98317708&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TMPCGQLLHFLQRNTIIAAVSGVAILMAIVLLLLGLASYIR Same 535766 chr2:97701174-97701245+ 748 748 70 0 539 97701174 97702729 Best 818 818;2623 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:97701174-97702729&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.652777777778 0.541353383459 15.5867208333 0.9278 -5.25022916667 20.83695 0.965775800213 0.959913344504 998 Best 998 998;2785 16.4608291667 0.3429 -4.26590833333 20.7267375 0.791516206951 1.04530880295 2508 Best 2508 2508;3771 0.0 0.0 ENST00000451384.6,ENST00000445382.6 NC,NCintron protein-coding gene protein-coding gene ENSG00000228486 819 559344 chr4:82295689-82295757+ NoOverlap chr4 82295689 82295757 + 6.73447832336 23 0.774700541695 -6.42728251996 13.1617608433 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;82295688;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A82295689-82295757%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A82295689-82295757&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.619066055752 0.923666784582 0.958444025428 83216842 83216910 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;83216841;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A82295689-82295757%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A83216842-83216910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNSLCGYFFNIIMFSFQSYVCHTVFIDGITYVCATDNALDSVTPSAFLK Same 560329 chr4:82295689-82295757+ 727 727 92 0 540 82285065 82295757 Best 819 819;2323;4757;63026 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:82285065-82295757&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.36231884058 0.0 7.64526521739 0.8909 -5.93764347826 13.5829086957 0.727561501361 1.05489528858 1977 Best 1977 1977;2332;2366;32061 10.2198826087 0.3679 -5.81303913043 16.0329217391 0.591557307649 0.989195693456 3193 Best 3193 3193;3988;4126;35871 0.0 0.0 pseudogene unitary pseudogene ENSG00000284516 820 474986 chr1:178479544-178479624- NoOverlap chr1 178479544 178479624 - 5.4919740348 27 0.880178247982 -4.82550753819 10.317481573 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;178479543;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A178479544-178479624-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A178479544-178479624&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.628045434881 0.923458612437 1.02718251737 178448679 178448759 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;178448678;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A178479544-178479624-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A178448679-178448759&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TASTLSLFLMFQIQEVLKLTLGHEQFRLKWVSFEVNK Same 476867 chr1:178479544-178479624- 769 769 51 0 541 178479544 178490348 Best 820 820;978;4383;7753 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:178479544-178490348&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.395061728395 0.642857142857 5.28698148148 0.9699 -8.17301111111 13.4599925926 0.784309156579 1.06329873515 1732 945 945;1732;2988;3553 4.94313333333 0.4013 -11.388462963 16.3315962963 0.569916741805 1.0280724223 3265 1971 1971;3265;4680;7353 0.0 0.0 ENST00000623247.1,ENST00000462775.5 NC,AntiUTR3 protein-coding gene protein-coding gene ENSG00000188585 821 559043 chr4:55831348-55831464+ NoOverlap chr4 55831348 55831464 + 7.10574859075 39 0.799270305748 1.36131788406 5.74443070669 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;55831347;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A55831348-55831464%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A55831348-55831464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.967134381432 0.922460951278 1.01082974209 56697514 56697630 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;56697513;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A55831348-55831464%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A56697514-56697630&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEVKIVMVKHYRIGLDEKYEVTKKWSLNDLQMIDGKEADTVSVTFYK Same 560028 chr4:55831348-55831464+ 743 743 78 0 106 55820027 55837348 126 126;431;821 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:55820027-55837348&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.324786324786 0.393939393939 11.0857794872 0.9706 3.43741794872 7.64836153846 0.995372694978 1.00428764155 785 476 476;785;846 20.1243461538 0.7694 6.59936666667 13.5249794872 0.977933805152 0.94942215068 1453 20 20;1015;1453 0.0 0.0 ENST00000504250.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 822 681613 chr2:236241404-236241502- Extension chr2 236241404 236241502 - 7.581851486 33 0.727033669263 0.177269657453 7.40458182855 chr2:236241395-236241502- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;236241403;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A236241404-236241502-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A236241404-236241502&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.876048447543 0.922389669714 1.05154897384 237150047 237150145 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;237150046;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A236241404-236241502-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A237150047-237150145&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QPGPVRGKLQIFQKTEKDPQARAGSPVQEYHTALVAGDLDHLKPLMDQFFQDANVVFEINK Same 682196 chr2:236241404-236241502- 780 780 42 0 542 236208836 236241502 Best 822 822;6974;25987;26845;30832;31542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:236208836-236241502&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.515151515152 0.304615384615 12.9630484848 0.8302 -1.86142424242 14.8244727273 1.01494072677 1.01294354381 615 Best 615 615;4249;12585;50927;61830;62940 19.1763606061 0.6271 -1.01465757576 20.1910181818 1.06421355844 1.04538929178 201 Best 201 201;4904;10592;24510;51714;55952 0.0 0.0 ENST00000409749.7,ENST00000430053.1,ENST00000415226.1 ExtensionMid,CDSintron,AntiNCintron coding exon(s) ASB18 intronic alternative ATG 823 505813 chr14:105707432-105707548- NoOverlap chr14 105707432 105707548 - 7.18099487286 39 0.553888800856 -0.920707688882 8.10170256175 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105707431;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105707432-105707548-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105707432-105707548&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.658487049947 0.922220529657 1.05268351321 106173769 106173885 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106173768;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105707432-105707548-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106173769-106173885&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GALSSPAQPPDLALYPPGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPR None NA NA 0 543 105704391 105719646 Best 823 823;838;1248;1547;1711;2216;9225;18253;35962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105704391-105719646&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.700854700855 0.766071428571 18.1933846154 0.9109 6.29598205128 11.8974025641 1.04763903394 1.05184437677 285 94 94;95;219;285;641;1432;1674;1887;5574 13.6907923077 0.5818 -5.57139230769 19.2621846154 1.02551725941 1.05513621874 686 51 51;686;1709;1746;1937;2386;2922;3268;6181 0.0 0.0896561003513 chr12:53382110-53383622+ ENST00000390547.3,ENST00000618756.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 824 531579 chr19:46427757-46427831- NoOverlap chr19 46427757 46427831 - 13.1594559145 25 0.772318913558 4.78341205597 8.37604385853 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;46427756;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A46427757-46427831-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A46427757-46427831&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.953242436081 0.922003280352 1.02993496805 46931014 46931088 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;46931013;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A46427757-46427831-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A46931014-46931088&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESKAGVGKRGKRKNKKNRRRHHASDK Same 533053 chr19:46427757-46427831- 779 779 45 0 160 46427757 46428416 191 191;373;824 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:46427757-46428416&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.573333333333 0.678733031674 18.419804 0.8478 -1.05234 19.472144 0.920724740086 0.978351009233 1233 499 499;1009;1233 18.419804 0.265 -1.05234 19.472144 0.734531551374 1.02837708303 2694 2542 2542;2596;2694 0.0 0.0 protein-coding gene protein-coding gene ENSG00000277531 825 583871 chr8:32647172-32647387+ NoOverlap chr8 32647172 32647387 + 5.27749857741 72 0.888343166925 -1.81412359451 7.09162217192 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;32647171;216;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A32647172-32647387%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A32647172-32647387&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.85457363321 0.921981725764 1.06067392311 32504691 32504906 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;32504690;216;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A32647172-32647387%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A32504691-32504906&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FSPFQPSSR*HNRMLLLLSLLPLLPPLLLPPPPPPLVLLLLLLLLHDSCFLHLSRHQLQMLEVRNMPFSLGYWFT Same 584801 chr8:32647172-32647387+ 686 686 139 7 544 32647141 32647662 Best 825 825;4050;51515 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:32647141-32647662&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.541666666667 0.782608695652 4.94820833333 0.9339 -0.679691666667 5.6279 0.741469189368 0.962483821973 1922 Best 1922 1922;4952;16190 -2.56451666667 0.7558 -10.8530666667 8.28855 0.381507676542 0.849718187283 4056 Best 4056 4056;41386;58906 0.0 0.0 ENST00000287842.7,ENST00000522569.1 CDSintron,NCintron under investigation; now made coding Finds a potential 62aa single exon CDS in a 5' UTR exon of NRG1 [chr8:32647202-32647390]. This CDS was initially considered potentially suspect as it overlaps with a highly conserved promoter region, and is fairly low complexity in terms of amino acid sequence. However, the CDS is conserved across to amphibians with an almost complete absence of non-3mer indels.Following the analytical stage of this work the decision was made to annotate a protein-coding gene, and ENSG00000286131 appeared in GENCODEv31. 826 476340 chr1:237941800-237942213- NoOverlap chr1 237941800 237942213 - 4.86983113099 138 0.518450479498 -9.98397679605 14.853807927 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;237941799;414;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237941800-237942213-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A237941800-237942213&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.678924872687 0.921290713691 0.835908008596 238105100 238105513 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;238105099;414;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237941800-237942213-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A238105100-238105513&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TIINTINQFSSLIIIMVLVIKLGIATFHF*VPEVTQGTSLISGILLLTRQKLAPISLMFHIFPLINMDILLPSTILSIIVGS*GGLNQTQLCKILAYSSSTHIG*MIAVLTYNPDITILNLIVYLILTITTFLVLNLSKCTTTLSLSGT Same 478234 chr1:237941800-237942213- 797 797 29 85 236 237940783 237943644 302 302;662;735;826;878;1214;1221;3426 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:237940783-237943644&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.364734299517 0.169394435352 0.195015942029 0.1202 -5.11628985507 5.3113057971 0.106427026033 0.911832860806 15205 Best 15205 15205;16524;19960;20662;24160;29790;35876;52414 25.6363768116 0.7081 -16.6725050725 42.3088818841 0.935982975671 0.94494026458 1906 316 316;468;540;604;1096;1312;1906;1926 0.0 0.832550986838 chrM:4470-5511+ pseudogene mitochondrially encoded NADH dehydrogenase 2 (MT-ND2) pseudogene (ENSG00000283166) 827 479248 chr10:122795270-122795464+ NoOverlap chr10 122795270 122795464 + 13.9214752692 65 0.929198138399 0.506598420327 13.4148768489 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122795269;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122795270-122795464%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122795270-122795464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.92847910361 0.921026251257 0.96297877168 124554786 124554980 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124554785;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122795270-122795464%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124554786-124554980&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LEDIYGCPYDFIEVFDGQQAASLSMGRFCAGTELTFLSSSNIMTTVFRSNAMITNTGFYALYNTVQQDER Same 481153 chr10:122795270-122795464+ 798 798 29 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.476923076923 0.544186046512 22.6799430769 0.9497 5.07218461538 17.6077584615 0.95478185813 0.956985195831 1064 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 26.3695830769 0.4314 1.03518307692 25.3344 1.02457215099 1.03536870146 704 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.0 0.173504429348 chr10:122635991-122636199+ ENST00000439464.6 NC pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 828 516572 chr17:13496410-13496469+ NoOverlap chr17 13496410 13496469 + 6.93372506499 20 0.933831540398 -5.74790499955 12.6816300645 ENST00000284110.1,ENST00000578576.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;13496409;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A13496410-13496469%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A13496410-13496469&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.590475326782 0.920755540551 0.984506841613 13399727 13399786 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;13399726;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A13496410-13496469%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A13399727-13399786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DDPLEAQEVLHAAQLPGRVADEPLAAHEEHLADGEVAQPVLQVLGVDADLDGAPR Same 517954 chr17:13496410-13496469+ 815 815 13 0 545 13496410 13496577 Best 828 828;10627 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:13496410-13496577&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.683333333333 0.717703349282 -3.33513 0.9557 -10.551425 7.216295 0.0406088255427 0.878075082774 25392 Best 25392 25392;73041 -16.286965 0.9787 -33.66949 17.382525 0.0216069758284 0.893926987442 26444 Best 26444 26444;52540 0.0 0.0 ENST00000284110.1 AntiCDS not annotated potentially spurious 829 505821 chr14:105741497-105741646- NoOverlap chr14 105741497 105741646 - 6.34156598553 50 0.392401007095 -4.14100205773 10.4825680433 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105741496;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105741497-105741646-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105741497-105741646&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.415965450193 0.92030518188 0.95796681576 106207834 106207983 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106207833;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105741497-105741646-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106207834-106207983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK None NA NA 0 546 105737771 105743011 Best 829 829;1682;2080;6140;6600;28138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105737771-105743011&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.58 0.567567567568 13.802514 0.7415 -9.333728 23.136242 1.08786792157 1.02575117095 31 5 5;31;57;114;876;1915 14.353886 0.5349 -17.97313 32.327016 1.06023188123 0.899564976565 224 82 82;224;483;1691;2370;2712 0.0 0.0480022233252 chr11:65393573-65393674+ ENST00000390542.6 NC immunoglobulin segment overlaps an immunoglobulin region 830 503454 chr14:23104384-23104464- NoOverlap chr14 23104384 23104464 - 9.34109993113 27 0.897596704051 2.26241119096 7.07868874018 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23104383;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23104384-23104464-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23104384-23104464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.972775338023 0.919756861383 1.02539877261 23573593 23573673 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23573592;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23104384-23104464-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23573593-23573673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTSYQVPPVQGPLLLSRDPAQYCHAVWGDPDSPNYHR Same 505293 chr14:23104384-23104464- 758 758 72 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.592592592593 0.285714285714 9.52618888889 0.9699 2.64002592593 6.88616296296 0.780243428894 0.923491136684 1754 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 13.1077925926 0.4787 -1.08754074074 14.1953333333 0.77273060226 0.951577134839 2573 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 831 542904 chr20:15892926-15893009+ NoOverlap chr20 15892926 15893009 + 6.32635361382 28 0.903937372614 -3.01419990616 9.34055351998 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;15892925;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A15892926-15893009%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A15892926-15893009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.773366927537 0.919739444239 1.04858853333 15873571 15873654 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;15873570;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A15892926-15893009%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A15873571-15873654&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IFVIPEGLEPKGLSPPYKKSKAKKPECSKDSSEGK Same 544282 chr20:15892926-15893009+ 803 803 28 0 547 15892926 15893009 Best 831 831 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:15892926-15893009&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488095238095 0.4 8.22096071429 0.9568 -3.33144642857 11.5524071429 0.86020825944 1.06710691563 1428 Best 1428 1428 10.8423071429 0.4516 -4.95340357143 15.7957107143 0.760603088878 1.00054159767 2600 Best 2600 2600 0.0 0.0 ENST00000217246.8 CDSintron coding exon(s) MACROD2 cassette exon 832 524088 chr18:26035069-26035119+ NoOverlap chr18 26035069 26035119 + 5.89960593511 17 0.914123122355 -8.11948833801 14.0190942731 ENST00000269137.11,ENST00000415083.6,ENST00000542420.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26035068;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26035069-26035119%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26035069-26035119&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.340107173854 0.919274358917 0.957155191917 23615033 23615083 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;23615032;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26035069-26035119%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A23615033-23615083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YTVQSFTVALLLSWVTLLPWVLLLLGWISLLWRWSLVCILLLAIL Same 525524 chr18:26035069-26035119+ 799 799 33 0 548 26035069 26035971 Best 832 832;4515;13026;18941 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26035069-26035971&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.549019607843 0.0 4.98184117647 1.0 -14.8149705882 19.7968117647 0.650210670158 0.954745543656 2301 Best 2301 2301;9434;15794;27273 0.0389882352941 0.9335 -37.3954235294 37.4344117647 0.47733470031 0.902431249069 3626 Best 3626 3626;17772;65195;68131 0.0 0.0 ENST00000269137.11,ENST00000269138.9 AntiCDS,AntiNC not annotated putative regulatory region 833 573700 chr6:9697636-9697725- NoOverlap chr6 9697636 9697725 - 7.86934322913 30 0.898203504489 0.975406675064 6.89393655407 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;9697635;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9697636-9697725-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A9697636-9697725&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.960740718399 0.919047531056 1.03283058137 9697869 9697958 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;9697868;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9697636-9697725-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A9697869-9697958&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TVQPGILGVVITVLLYILLFVISSLILYLYCLR Same 574729 chr6:9697636-9697725- 766 766 67 0 427 9697636 9705441 603 603;833;3220;7824 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:9697636-9705441&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4 0.5625 10.8764533333 0.9695 -2.4838 13.3602533333 1.00244073541 1.04530331622 715 557 557;715;1581;2780 24.6170633333 0.8225 -5.08055 29.6976133333 1.03538253702 1.02734037975 548 489 489;548;738;1712 0.0 0.0 ENST00000492094.6 NC redundant PhyloCSF signals are accounted for elsewhere on the list 834 514533 chr16:57937087-57937278- NoOverlap chr16 57937087 57937278 - 5.92141095537 64 0.794382534142 0.142203093739 5.77920786163 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;57937086;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A57937087-57937278-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A57937087-57937278&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.895663734277 0.918856219634 1.04414176121 57970991 57971182 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;57970990;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A57937087-57937278-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A57970991-57971182&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSGPSTMATPCQNMELNCLVQDQIPGQVASASALQNLVEHLPNVPSYRIPITRIPVLTSRRTSLSNSSFAKETRSSIRQLGSTILPTQHSHICGVCFCMAGAVFLPGCCGHSVDH Same 516185 chr16:57937087-57937278- 749 749 85 0 549 57937087 57937278 Best 834 834 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:57937087-57937278&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.598958333333 0.323886639676 7.1764515625 0.9915 -2.17718125 9.3536328125 0.97133568697 1.07307109346 956 Best 956 956 6.099940625 0.4812 -7.4022953125 13.5022359375 0.739083869684 1.00554734697 2674 Best 2674 2674 0.0 0.0 ENST00000564654.1,ENST00000251102.12,ENST00000564450.1 NC,CDSintron,NCintron coding exon(s) CNGB1 alternative first exon 835 631901 chr12:106681962-106681991- Extension chr12 106681962 106681991 - 5.23663998246 10 0.879418631266 -12.7585997105 17.9952396929 chr12:106681962-106682051- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;106681961;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A106681962-106681991-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A106681962-106681991&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.106944332451 0.918595256649 0.945711569572 107075740 107075769 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;107075739;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A106681962-106681991-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A107075740-107075769&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNCCLMICKSTQESVTHWEELGA Same 632562 chr12:106681962-106681991- 711 711 124 0 550 106681962 106681991 Best 835 835 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:106681962-106681991&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.366666666667 0.0 -0.18226 0.9638 -23.12338 22.94112 0.211814705331 0.947775716156 8319 Best 8319 8319 -18.5595 0.7334 -39.01926 20.45976 -0.0110263834585 0.839745615697 41557 Best 41557 41557 0.0 0.0 ENST00000547531.1,ENST00000549203.2,ENST00000357881.8,ENST00000539967.6,ENST00000536688.5 NC,NCintron,AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated potentially spurious 836 503792 chr14:34965561-34965683- NoOverlap chr14 34965561 34965683 - 7.58524145077 41 0.841535429774 3.15027568108 4.43496576969 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;34965560;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34965561-34965683-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A34965561-34965683&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03346492492 0.917294198528 0.928867593816 35434767 35434889 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;35434766;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34965561-34965683-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A35434767-35434889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FDVHSSNSLGFISHYFSLMEMKFIYHHVLSDISGKVLVDISSRPSIVLYGVLSSLQTSTFGK Same 505635 chr14:34965561-34965683- 763 763 73 0 551 34954880 34969313 Best 836 836;1153;1921;2166;5306;5436 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:34954880-34969313&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.390243902439 0.0 10.1375902439 0.9931 2.62655853659 7.51103170732 0.991899792337 1.00701699846 816 Best 816 816;1162;1336;1486;1625;4048 17.006297561 0.6601 3.29363170732 13.7126658537 0.97261550424 0.965287774403 1542 390 390;1335;1542;1847;2704;3383 0.0 0.0 ENST00000554945.1 NCintron pseudogene unitary pseudogene ENSG00000258704 837 579744 chr7:143623776-143624021+ NoOverlap chr7 143623776 143624021 + 5.80622683143 82 0.497908397486 0.0716159207883 5.73461091064 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143623775;246;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143623776-143624021%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143623776-143624021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.727045510867 0.917124481026 1.04213677285 143320869 143321114 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143320868;246;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143623776-143624021%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143320869-143321114&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TMATIAAAAFEALMDGVTCWDVPRGPIPSELLLIGEAAFPVMVNDKGQVLIAASSYGRGRLVVVSHEGYLSHAGLASFLLNAVSWLCPCPGAPVGVRPSLAPLVNILQDAGLEAQVKPEPGEPLGVYCINAYNDTLTATLIQFVK Same 580714 chr7:143623776-143624021+ 784 784 53 0 552 143620652 143624390 Best 837 837;1457;51543 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143620652-143624390&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.589430894309 0.42139322421 15.9498646341 0.9559 -0.244608536585 16.1944731707 0.939579856846 0.994129353248 1141 681 681;1141;27038 33.8414439024 0.8849 -3.87145243902 37.7128963415 1.01548906076 1.01984820714 842 538 538;842;49179 0.931082005058 chr7:143702995-143703617+ 0.752528936745 chr7:143702995-143703617+ ENST00000518791.5,ENST00000357344.8 CDSintron,UTR5intron pseudogene transient receptor potential cation channel, subfamily M, member 8 channel-associated factor (TRPM8) pseudogene existed on the wrong strand (ENSG00000283537) 838 505814 chr14:105707789-105707914- NoOverlap chr14 105707789 105707914 - 6.08578092113 42 0.524509622267 -2.62787613273 8.71365705385 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105707788;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105707789-105707914-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105707789-105707914&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.50354070578 0.916521377805 1.04023204209 106174126 106174251 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106174125;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105707789-105707914-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106174126-106174251&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSK None NA NA 0 543 105704391 105719646 823 823;838;1248;1547;1711;2216;9225;18253;35962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105704391-105719646&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 0.5301542777 12.3090595238 0.8969 -2.60399047619 14.91305 1.06847124488 0.983658540071 95 94 94;95;219;285;641;1432;1674;1887;5574 7.06434047619 0.4628 -13.3763833333 20.4407238095 0.930839470913 1.08640854514 1937 51 51;686;1709;1746;1937;2386;2922;3268;6181 0.0 0.121853437485 chr16:75234889-75235986- ENST00000390547.3,ENST00000618756.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 839 522971 chr17:68693973-68694062- NoOverlap chr17 68693973 68694062 - 6.06490666171 30 0.770371557183 -3.26513998707 9.33004664878 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;68693972;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A68693973-68694062-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A68693973-68694062&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.704400904941 0.915657763221 1.04576972304 66690114 66690203 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;66690113;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A68693973-68694062-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A66690114-66690203&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAGWKERRSL*GDIDVHKYYQSWLVFTPFQALTTMVSPSFVICFEVFWWDQWQPK Same 524406 chr17:68693973-68694062- 792 792 47 7 553 68693973 68694062 Best 839 839 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:68693973-68694062&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.544444444444 0.473684210526 5.78976666667 0.8865 -6.60437666667 12.3941433333 0.766811382209 1.07375417237 1800 Best 1800 1800 9.98222666667 0.345 -5.43902 15.4212466667 0.677039743363 1.00166861146 2895 Best 2895 2895 0.0 0.0 ENST00000587999.1 AntiNCintron pseudogene unitary pseudogene ENSG00000283376 840 671486 chr19:46412811-46413023- Extension chr19 46412811 46413023 - 15.6989901733 71 0.77663671815 6.81023099179 8.88875918153 chr19:46412607-46413023- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;46412810;213;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A46412811-46413023-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A46412811-46413023&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.94768178693 0.915485139613 0.994391409763 46916068 46916280 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;46916067;213;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A46412811-46413023-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A46916068-46916280&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FVGAHCPLTPDITLEILKTLEKSHVGGWFPWGFLPSPDCLILWSVPDVCKDVDLDVLVEALKPVGTFKKIGKVFRKEEDSTVGMLQIGEDVDYLLIPR Same 672083 chr19:46412811-46413023- 767 767 73 0 554 46412811 46413023 Best 840 840 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:46412811-46413023&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586854460094 0.659442724458 27.393528169 0.9559 11.8735591549 15.5199690141 1.00814468346 0.97058421101 662 Best 662 662 24.0738211268 0.4017 8.60094507042 15.4728760563 1.05350322038 0.991057805695 282 Best 282 282 0.0 0.082700167116 chr19:46411194-46412810- ENST00000307522.3 Extension5p under investigation CCDC8 potential non-ATG start 841 670959 chr19:40458265-40458378- Extension chr19 40458265 40458378 - 9.37405797957 38 0.826572381973 6.29905786326 3.07500011631 chr19:40458265-40458546- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;40458264;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40458265-40458378-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A40458265-40458378&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.07770126127 0.915399549352 0.777119765619 40964172 40964285 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;40964171;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40458265-40458378-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A40964172-40964285&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NDLSTEPPLCPRPSPTPRPPAPPPPPAPPLPPLPPPPPTSDSHSLSPLR Same 671558 chr19:40458265-40458378- 800 800 41 0 555 40458139 40467303 Best 841 841;9776;45931;47832;50410;51155;58712 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:40458139-40467303&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.815789473684 0.729833546735 17.8589052632 0.8899 13.2283578947 4.63054736842 0.985465096862 0.817369268875 868 Best 868 868;6935;16896;20165;31195;46951;56302 14.4249078947 0.4522 9.19645 5.22845789474 0.61861351896 0.691471961015 3101 Best 3101 3101;8091;23506;32765;33228;42442;52654 0.0 0.0412566274744 chr14:104938063-104954799- ENST00000263368.8,ENST00000601346.5,ENST00000597870.1 ExtensionMid,NC,NCintron coding exon(s) BLVRB retained intron CDS 842 526797 chr19:3314755-3314859+ NoOverlap chr19 3314755 3314859 + 10.6862257464 35 0.54529204678 4.44889432362 6.23733142274 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;3314754;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3314755-3314859%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A3314755-3314859&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.887259798061 0.915320673069 1.017328648 3314753 3314857 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;3314752;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3314755-3314859%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A3314753-3314857&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FGAALAVRPSMEVPGPPVSSKPGETSVKWQLCYDTTAKMWWMVSGAGPAVAR Same 528243 chr19:3314755-3314859+ 851 851 -9 0 556 3314755 3324737 Best 842 842;35279;50509;51050 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:3314755-3324737&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.628571428571 0.680555555556 19.8477657143 0.8651 9.17295714286 10.6748085714 1.0288187838 1.04847288096 493 Best 493 493;18142;27310;38158 26.1996057143 0.5035 7.53670285714 18.6629028571 1.11364453374 1.02018316032 29 Best 29 29;23039;33432;48631 0.0 0.0 coding exon(s) NFIC alternative first exon 843 479222 chr10:122568831-122568902+ NoOverlap chr10 122568831 122568902 + 9.96316264321 24 0.842175936522 -0.295691658122 10.2588543013 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122568830;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122568831-122568902%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122568831-122568902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.913090645187 0.914929017305 1.04420378214 124328347 124328418 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124328346;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122568831-122568902%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124328347-124328418&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESYLSSCPHSGWYNHECGHREDAGVMCSGSVDITLLCVSATLSQYYHT Same 481127 chr10:122568831-122568902+ 789 789 54 0 174 122568594 122568902 210 210;843;1134 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122568594-122568902&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.569444444444 0.344497607656 15.6193333333 0.9221 -1.77897083333 17.3983041667 0.958233539482 0.998502466375 1045 213 213;1045;1571 41.4412958333 0.9652 -19.1115333333 60.5528291667 0.979952649889 1.00815633179 1423 1064 1064;1423;1537 0.18209533076 chr10:122576399-122576722+ 0.309932849642 chr10:122576399-122576722+ ENST00000330163.8 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 844 534326 chr2:89533188-89533313+ NoOverlap chr2 89533188 89533313 + 9.76791669641 42 0.401007095445 1.55996915095 8.20794754546 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89533187;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89533188-89533313%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89533188-89533313&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.668806112374 0.914727600537 1.04767946161 91795522 91795647 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91795521;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89533188-89533313%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91795522-91795647&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FGVIHLVFTNLLLWANGVLNESKHQLNEHKEWLITLGFGNITTGEC Same 535703 chr2:89533188-89533313+ 975 975 -131 0 52 89533188 89547118 59 59;529;844;1124;3586;7862 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89533188-89547118&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.507936507937 0.24633431085 15.9144333333 0.5579 3.39807857143 12.5163547619 0.990373301612 1.0390513582 831 10 10;123;831;1300;2657;4594 38.8771738095 0.7186 7.80036666667 31.0768071429 0.95509210065 1.02536265317 1759 312 312;340;1357;1759;1894;1991 0.988237377904 chr4:4202448-4202578- 0.994068899283 chr4:4202448-4202578- pseudogene Otopetrin 1 (OTPO1) unprocessed pseudogene (ENSG00000283427) 845 585593 chr8:143789761-143789868+ NoOverlap chr8 143789761 143789868 + 8.1427332999 36 0.693244491917 1.94741393957 6.19531936033 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143789760;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143789761-143789868%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143789761-143789868&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.922731242748 0.914398693042 1.02215484726 144871931 144872038 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144871930;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143789761-143789868%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144871931-144872038&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HGESPADSGLLGVGWGGSSGSCPLQPEHGAGQASQCGLLLQAIKDTEAQVDRLRQEAQKAEEALAMARLELREQTQEGGPGMGR Same 586530 chr8:143789761-143789868+ 814 814 31 0 75 143788915 143790593 85 85;88;331;613;845;2035;14755 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143788915-143790593&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.685185185185 0.419254658385 10.7764972222 0.815 0.0282111111111 10.7482861111 0.946445500419 1.06069217049 1111 92 92;111;801;1056;1111;2067;2390 13.4148555556 0.5024 -5.78228333333 19.1971388889 1.00865319562 1.0545114261 967 116 116;127;431;967;1717;2161;3235 0.0 0.0426639168964 chr3:9750945-9751192+ ENST00000527139.5 NC protein-coding gene protein-coding gene ENSG00000203499 846 578840 chr7:100793828-100793899+ NoOverlap chr7 100793828 100793899 + 13.4769707123 24 0.823219780779 2.50060415765 10.9763665547 ENST00000613979.4,ENST00000618565.4 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100793827;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100793828-100793899%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100793828-100793899&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.945131704135 0.914192706261 1.0391239281 100391450 100391521 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100391449;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100793828-100793899%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100391450-100391521&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTLPLFGLPSPSQFLTMTVPAAMECPAGTIYQSCMTPCPASCANLADPGDCEGPCVEGCASIPGYAYSGTQSLPWLTVAAPAMASTTR Same 579883 chr7:100793828-100793899+ 813 813 33 0 557 100793828 100793977 Best 846 846;858 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100793828-100793977&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.569444444444 0.0 22.10085 0.9913 5.24316666667 16.8576833333 1.04209105734 1.02449396293 340 Best 340 340;413 45.3694333333 0.818 3.04255833333 42.326875 1.02717561531 0.998871843118 660 Best 660 660;1086 0.0 0.209105197596 chr19:39870216-39870415- ENST00000613979.4,ENST00000542585.5,ENST00000546292.2,ENST00000538115.5 CDS,NC,CDSintron,NCintron not annotated Frameshift within a ZAN coding exon that is due to a human specific 1bp deletion. This may suggest the locus is pseudogenic, although there is evidence to suggest that translation may proceed from other transcripts. 847 491099 chr12:40436117-40436185+ NoOverlap chr12 40436117 40436185 + 7.78229558468 23 0.914097014207 -3.15755223191 10.9398478166 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40436116;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40436117-40436185%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40436117-40436185&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.782423185665 0.914074506586 1.02579448365 40829919 40829987 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40829918;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40436117-40436185%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40829919-40829987&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HCGILLDSSGPLASCHPIVNPKPYHEVCEALTLTPLVEK Same 493076 chr12:40436117-40436185+ 809 809 38 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.463768115942 0.0 13.614826087 0.9794 0.730686956522 12.8841391304 0.961444050799 1.05293557601 1025 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 29.2635565217 0.8037 -9.14577826087 38.4093347826 1.0491809921 0.980859472496 337 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.258194009187 chr11:1232450-1232544+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 848 544390 chr20:64037999-64038073+ NoOverlap chr20 64037999 64038073 + 13.7293521363 25 0.722449378195 2.38025603294 11.3490961033 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;64037998;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A64037999-64038073%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A64037999-64038073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.938191902785 0.913475251353 1.03604894345 62669352 62669426 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;62669351;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A64037999-64038073%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A62669352-62669426&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AYSPACSVPDVLRHYRAIIFEDLQAAVK Same 545784 chr20:64037999-64038073+ 844 844 4 0 167 64037999 64063428 199 199;531;848;20952;33477;42298;59555;67021;69802 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:64037999-64063428&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.68 1.19047619048 28.62812 0.9424 9.912308 18.715812 0.995132343224 1.03690006778 789 275 275;549;789;44125;48283;51520;58987;63113;63376 34.917712 0.4769 9.992132 24.92558 0.964493295828 1.04481545387 1640 37 37;1640;2782;60631;64517;67968;69077;72284;73543 0.0 0.091154357845 chr19:1508443-1508570- ENST00000431158.1,ENST00000217130.4 NC,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000196421 849 473421 chr1:108495475-108495582- NoOverlap chr1 108495475 108495582 - 7.14162214597 36 0.529017997169 -2.29757211606 9.43919426203 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;108495474;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A108495475-108495582-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A108495475-108495582&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.567466349392 0.91341709898 1.0292182105 109038097 109038204 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;109038096;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A108495475-108495582-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A109038097-109038204&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WTFHNFIDEGRKSSLLWKYLLAGGIVGTYPQTCTMPLDHLKILLQVCCIVHVYDFE Same 475301 chr1:108495475-108495582- 910 910 -61 0 558 108495475 108495582 Best 849 849 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:108495475-108495582&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.425925925926 0.0 29.4616611111 0.887 2.04911388889 27.4125472222 1.02001957957 1.00249263448 576 Best 576 576 40.7916111111 0.5491 2.70918888889 38.0824222222 0.985484933791 0.990399693563 1338 Best 1338 1338 0.445633209636 chr1:108157462-108157620- 0.653410582711 chr1:108157462-108157620- pseudogene solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 (SLC25A24) pseudogene (ENSG00000283354) 850 572283 chr6:99414573-99414614+ NoOverlap chr6 99414573 99414614 + 7.44770005771 14 1.0 -7.95744279453 15.4051428522 ENST00000369239.9,ENST00000438806.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;99414572;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99414573-99414614%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A99414573-99414614&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.331949570055 0.913287126555 0.957644659682 99862449 99862490 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;99862448;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99414573-99414614%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A99862449-99862490&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHHVSSTHFHISNPALSNSICFLTWILLVLE*LHPLLLVQGPLLPR Same 573308 chr6:99414573-99414614+ 909 909 -59 6 559 99400282 99414614 Best 850 850;6627;41535;67777 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:99400282-99414614&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 6.60353571429 0.9792 -11.1489071429 17.7524428571 0.566698680532 0.996862790273 2736 Best 2736 2736;9278;39855;60784 3.71605 0.9259 -28.6513214286 32.3673714286 0.499313505159 1.0173829047 3532 Best 3532 3532;3708;32779;67353 0.0 0.0 ENST00000369239.9,ENST00000466057.1 AntiCDS,AntiNC not annotated putative regulatory region 851 578572 chr7:92058169-92058411+ NoOverlap chr7 92058169 92058411 + 5.27317783276 81 0.876011216323 -1.00748395993 6.28066179269 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;92058168;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A92058169-92058411%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A92058169-92058411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.877860608572 0.913268940512 1.05539506222 91687483 91687725 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;91687482;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A92058169-92058411%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A91687483-91687725&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGISAAVSSGMDSYSTYLATVKVSGSWLEEQDEDIYEVESRVPLPHPFPLCEHLDENNSVIVNTSIFHFIHKRNGHILKLISKISLPTPPYSVSIK Same 579613 chr7:92058169-92058411+ 715 715 136 0 560 92058169 92058411 Best 851 851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:92058169-92058411&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.353909465021 0.530278232406 8.94307407407 0.9997 -0.863308641975 9.80638271605 1.01456540206 1.06399346961 618 Best 618 618 30.0723987654 0.8711 1.16960123457 28.9027975309 1.00659712973 1.03850150527 1002 Best 1002 1002 0.0 0.0 ENST00000491695.1,ENST00000356239.7 NC,CDSintron coding exon(s) AKAP9 alternative first exon 852 588123 chr8:142801084-142801176- NoOverlap chr8 142801084 142801176 - 8.60023549411 31 0.69063662116 1.13963868349 7.46059681062 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;142801083;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142801084-142801176-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A142801084-142801176&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.883441652863 0.913061106338 1.04866656109 143882500 143882592 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;143882499;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142801084-142801176-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A143882500-143882592&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CQPQVQTEGPVLPPPAQALHCHVCCGHEHCESLVECAPTDKYCVITRASEYPGQARPPSPAPLGTSPPGCPCPALVQTPGHHCPPK Same 589068 chr8:142801084-142801176- 828 828 24 0 299 142797632 142806142 399 399;852;11586 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:142797632-142806142&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.634408602151 0.428571428571 8.96364193548 0.8333 -0.612593548387 9.57623548387 0.787632821803 1.04944982859 1715 343 343;1715;14005 5.96259354839 0.3968 -8.6816516129 14.6442451613 0.601552329886 1.00025108482 3159 2323 2323;3159;19529 0.0 0.118646843845 chr17:35193291-35194307- ENST00000510610.2 AntiNCintron pseudogene lymphocyte antigen 6 complex, locus K (LY6K) pseudogene (ENSG00000283686) 853 537026 chr2:227599130-227599243+ NoOverlap chr2 227599130 227599243 + 7.07434476834 38 0.680719021174 0.169713313642 6.90463145469 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227599129;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227599130-227599243%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227599130-227599243&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.829445035212 0.912887314523 1.04911469409 228463846 228463959 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228463845;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227599130-227599243%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228463846-228463959&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCCGGCCSTPVICCCRRTCHSCGCGCGKGCCQQKCCCQKQCCC Same 538396 chr2:227599130-227599243+ 837 837 16 0 561 227598893 227617809 Best 853 853;1652;2344;9463;10241;31196;35213 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227598893-227617809&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.614035087719 0.28125 7.34699473684 0.9416 -4.23414473684 11.5811394737 0.937517325457 1.07021186235 1157 692 692;818;1157;2569;3216;3360;61544 5.54878421053 0.5814 -5.91821052632 11.4669947368 0.609628446434 0.933135014056 3136 2617 2617;3136;3286;3380;3692;5489;30629 0.0 0.110455355796 chr17:41315333-41315650- protein-coding gene (shared cluster) protein-coding genes ENSG00000284643, ENSG00000284622, ENSG00000284704, ENSG00000284631 854 636675 chr14:75077565-75077786+ Extension chr14 75077565 75077786 + 13.9186243169 74 0.896803234913 5.05760810927 8.86101620765 chr14:75077532-75077786+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;75077564;222;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75077565-75077786%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A75077565-75077786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.948199178323 0.912830142261 1.00684544029 75544268 75544489 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;75544267;222;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75077565-75077786%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A75544268-75544489&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KHESFIHTFRQAREVQQVTAKGGNCSHLPPILPAENPDCIQCPQCSHHFAPKVAEQHIPKCKTIKNCLPPLRKHYS Same 637322 chr14:75077565-75077786+ 793 793 61 0 562 75077565 75077786 Best 854 854 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:75077565-75077786&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.504504504505 0.220895522388 20.2230027027 0.9991 6.74897297297 13.4740297297 0.926901023574 1.00502964982 1204 Best 1204 1204 36.4431297297 0.7617 10.0473918919 26.3957378378 0.927842871545 1.0288299102 1955 Best 1955 1955 0.0 0.0 ENST00000524913.2,ENST00000238686.8,ENST00000526748.1 Extension3p,UTR3,NC pseudo-exon ZC2HC1C has ZNF repeats downstream of the STOP codon 855 522402 chr17:55511098-55511337- NoOverlap chr17 55511098 55511337 - 12.0487888256 80 0.897172503243 2.30120120246 9.74758762314 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;55511097;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A55511098-55511337-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A55511098-55511337&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.972670831715 0.912461716991 1.00669210053 53588459 53588698 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;53588458;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A55511098-55511337-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A53588459-53588698&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") THFSTVGEVMEFYLEIDPVTLNLIILVASYVILLLVFLISCVLYDCRGKDPSKEYAPEATLEAQPSIRLVVMHPSVAGPHWPKGPGLSLGDPAPLGK Same 523830 chr17:55511098-55511337- 778 778 77 0 563 55511098 55511337 Best 855 855 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:55511098-55511337&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.592105263158 18.90195375 0.9907 1.75655625 17.1453975 0.949819599972 0.995696708538 1089 Best 1089 1089 43.14408875 0.9146 5.42656875 37.71752 1.01389080528 1.0064992043 873 Best 873 873 0.0 0.0 protein-coding gene protein-coding gene ENSG00000261873 856 529183 chr19:51703248-51703328+ NoOverlap chr19 51703248 51703328 + 9.43866668586 27 0.651906106152 -3.61365193239 13.0523186183 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51703247;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51703248-51703328%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51703248-51703328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.81361584672 0.912334725481 0.965984754619 52206501 52206581 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52206500;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51703248-51703328%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52206501-52206581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VNPAPSSVQDVTVTRGDQAMFSCIVNFQLPKEEITYSWKFAGGGVSR Same 530642 chr19:51703248-51703328+ 846 846 10 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.734693877551 18.8640518519 0.9609 -7.27995555556 26.1440074074 1.01452713266 1.00771936619 620 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 20.3155740741 0.3866 -9.36905555556 29.6846296296 0.947951309869 1.02314673124 1835 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.00927165717581 chr13:113759270-113759315+ ENST00000572160.5 NC protein-coding gene protein-coding gene ENSG00000182310 857 492308 chr12:64781139-64781264+ NoOverlap chr12 64781139 64781264 + 9.91074997719 42 0.615628144903 5.55341420855 4.35733576864 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;64781138;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A64781139-64781264%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A64781139-64781264&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00779992691 0.911963044911 0.927347612922 65174919 65175044 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;65174918;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A64781139-64781264%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A65174919-65175044&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRDSLDSSTEASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLR Same 494290 chr12:64781139-64781264+ 820 820 37 0 564 64780731 64781264 Best 857 857;4476;48911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:64780731-64781264&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.753968253968 1.00531914894 11.5793238095 0.8004 5.89658333333 5.68274047619 0.857616997902 0.914322972245 1438 Best 1438 1438;5625;63661 21.1563547619 0.7564 -0.195995238095 21.35235 1.04832066526 1.04789035223 354 Best 354 354;3489;58706 0.0 0.0387323756192 chr3:33516981-33517174- ENST00000544190.5,ENST00000456757.6 Extension5p,NC coding exon(s) TBC1D30 5' extension. 858 578841 chr7:100793906-100793977+ NoOverlap chr7 100793906 100793977 + 14.659829244 24 0.814328221561 6.11473326882 8.5450959752 ENST00000613979.4,ENST00000618565.4 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100793905;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100793906-100793977%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100793906-100793977&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.944923733519 0.911955593167 1.01078203112 100391528 100391599 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100391527;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100793906-100793977%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100391528-100391599&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTLPLFGLPSPSQFLTMTVPAAMECPAGTIYQSCMTPCPASCANLADPGDCEGPCVEGCASIPGYAYSGTQSLPWLTVAAPAMASTTR Same 579884 chr7:100793906-100793977+ 808 808 50 0 557 100793828 100793977 846 846;858 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100793828-100793977&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.694444444444 0.350649350649 27.3209083333 0.9911 7.14661666667 20.1742916667 1.03530794562 1.02591089306 413 340 340;413 48.08815 0.8216 12.0441791667 36.0439708333 1.00150663118 1.03404024006 1086 660 660;1086 0.0 0.210986188578 chr19:39870216-39870415- ENST00000613979.4,ENST00000542585.5,ENST00000546292.2,ENST00000538115.5 CDS,NC,CDSintron,NCintron not annotated Frameshift within a ZAN coding exon that is due to a human specific 1bp deletion. This may suggest the locus is pseudogenic, although there is evidence to suggest that translation may proceed from other transcripts. 859 477002 chr10:24042393-24042500+ NoOverlap chr10 24042393 24042500 + 5.10122213264 36 0.909452964065 -3.23944999009 8.34067212273 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;24042392;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24042393-24042500%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A24042393-24042500&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.726207334442 0.911885470427 1.05919046269 24331322 24331429 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;24331321;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24042393-24042500%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A24331322-24331429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSLGEKILRTGSEGNLVKQQQVQTAATPAQRKATPHKGNV Same 478897 chr10:24042393-24042500+ 831 831 28 0 265 24042285 24042500 346 346;859 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:24042285-24042500&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.490740740741 0.482142857143 8.24936944444 0.9972 -3.85379166667 12.1031611111 0.997014450548 1.0611077825 770 161 161;770 11.8545833333 0.6852 -4.13615 15.9907333333 0.88321583936 1.01917536148 2186 165 165;2186 0.0 0.0 ENST00000376462.5 UTR5intron coding exon(s) KIAA1217 alternative first coding exon 860 548776 chr22:39504207-39504446+ NoOverlap chr22 39504207 39504446 + 11.7908437148 80 0.813079842832 2.42118493812 9.36965877665 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;39504206;240;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A39504207-39504446%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A39504207-39504446&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.975173308516 0.91179503582 1.01273203883 39900212 39900451 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;39900211;240;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A39504207-39504446%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A39900212-39900451&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLQVLLLLILILGLYVFPSVYSVTPSPCQSPMAPWSREAVLSLYRALLRQGRQLRYTDRDFYFASIRREFRKNQKLEDAEARERQLEKGLVFLNGKLGRII*DPPR Same 550147 chr22:39504207-39504446+ 796 796 64 1 565 39496763 39504446 Best 860 860;43549 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:39496763-39504446&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.591666666667 0.666666666667 15.0144275 0.9874 1.56212625 13.45230125 0.953736700372 1.01677967998 1072 Best 1072 1072;15501 37.91803125 0.8479 8.75911375 29.1589175 0.981731980762 1.02805302852 1394 Best 1394 1394;21001 0.0 0.0398883337155 chr22:39512232-39512494+ ENST00000325301.6,ENST00000428069.1 UTR5,NC protein-coding gene protein-coding gene ENSG00000285025 861 483237 chr11:1086243-1086317+ NoOverlap chr11 1086243 1086317 + 18.451623745 25 0.762858930343 10.4060601395 8.04556360543 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1086242;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1086243-1086317%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1086243-1086317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.94186831305 0.911657157183 0.941249455462 1084239 1084313 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1084238;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1086243-1086317%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1084239-1084313&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPLSGCPQYHTECVSGCVCPDGLMDDGRGGCVVEK Same 485167 chr11:1086243-1086317+ 819 819 42 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.653333333333 0.672043010753 32.638688 0.9018 18.14284 14.495848 0.925618563579 0.983763895878 1210 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 52.830228 0.9519 22.325016 30.505212 0.973629668899 1.03764976386 1529 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.243183313166 chr11:1176514-1176665+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 862 481920 chr10:101834274-101834369- NoOverlap chr10 101834274 101834369 - 9.54572806135 32 0.811770428016 5.1674312893 4.37829677205 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;101834273;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A101834274-101834369-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A101834274-101834369&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03659198605 0.911480100385 0.87299593867 103594031 103594126 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;103594030;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A101834274-101834369-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A103594031-103594126&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPCPRPTMNLEGLEMVAVLVVLALFVKVLEQFGLFEPVSLEGNPGVLACLSCWLVGQLPHSTR Same 483837 chr10:101834274-101834369- 790 790 72 0 566 101834274 101834369 Best 862 862 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:101834274-101834369&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5625 0.269284712482 12.558334375 0.9759 6.307121875 6.2512125 0.951459613529 0.903842579203 1086 Best 1086 1086 36.006653125 0.8817 10.954403125 25.05225 1.0190796409 1.05146628588 797 Best 797 797 0.0 0.116066020774 chr4:21303807-21303906- ENST00000239117.3,ENST00000355657.6 CDSintron,NCintron coding exon(s) KCNIP2 alt first coding exon 863 465046 chr1:42798121-42798195+ NoOverlap chr1 42798121 42798195 + 10.846771965 25 0.74390234226 0.143896021843 10.7028759432 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;42798120;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42798121-42798195%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A42798121-42798195&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.912687933512 0.911148771965 1.0373457947 43263792 43263866 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;43263791;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42798121-42798195%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A43263792-43263866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSALFVLPGVIMLFFSPLSLSAFYCLMWSLSYIFFPDALWGK Same 466906 chr1:42798121-42798195+ 849 849 14 0 113 42789876 42798195 135 135;762;863;3977;11957 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:42789876-42798195&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.506666666667 0.420168067227 17.099412 0.9792 2.579036 14.520376 1.02379439302 1.04156571403 541 Best 541 541;636;1178;1669;3207 30.314968 0.7367 -0.266392 30.58136 1.0537166245 1.04364392368 279 Best 279 279;926;1615;1912;2144 0.0 0.0 ENST00000536543.5 NC protein-coding gene protein-coding gene ENSG00000274386 864 571673 chr6:44217472-44217672+ NoOverlap chr6 44217472 44217672 + 12.7478493056 67 0.836392767224 3.55654187589 9.19130742972 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;44217471;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A44217472-44217672%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A44217472-44217672&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.923758887224 0.909952610189 0.998588313899 44185209 44185409 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;44185208;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A44217472-44217672%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A44185209-44185409&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTGPAMPTPLLPLLLRLLLSCLLLPAARLARQYLLPLLRRLARRLGSQDMREALLGCLLFILSQRHSPDAGEASR Same 572700 chr6:44217472-44217672+ 795 795 69 0 567 44217472 44223932 Best 864 864;7128;57231 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:44217472-44223932&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.676616915423 0.580279813458 19.7890447761 0.9866 5.57965671642 14.2093880597 0.915279303668 0.990671793238 1251 Best 1251 1251;4456;26350 24.5928641791 0.41 7.29639253731 17.2964716418 1.07919663998 1.01439555336 128 Best 128 128;7453;43691 0.0 0.0325991937862 chr2:84880932-84881039- ENST00000573382.2 NC protein-coding gene protein-coding gene ENSG00000262179 865 475489 chr1:204274737-204274811- NoOverlap chr1 204274737 204274811 - 11.9864080143 25 0.920393682765 5.53755996823 6.44884804606 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204274736;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204274737-204274811-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204274737-204274811&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.965701614258 0.909891695571 0.963877439908 204243865 204243939 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204243864;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204274737-204274811-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204243865-204243939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPVPVTTQGLSTHWLLSLPSSSLPQLFCFSLYSHNERRNTFLHPVTGQVPEENKKFDLK Same 477374 chr1:204274737-204274811- 785 785 80 0 568 204274737 204296665 Best 865 865;5006;23025;23970 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204274737-204296665&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.453333333333 0.263157894737 13.073144 0.9591 3.02182 10.051324 0.927267677032 1.03016055169 1203 Best 1203 1203;9385;10452;47784 22.634736 0.6258 5.487696 17.14704 1.00697814418 0.978859058481 994 Best 994 994;6785;21244;41089 0.0 0.0 ENST00000272203.7,ENST00000564627.1 UTR5,NC redundant PhyloCSF signals are accounted for elsewhere on the list 866 486544 chr11:125953399-125953587+ NoOverlap chr11 125953399 125953587 + 3.67503969821 63 0.693307465658 -4.26409682371 7.93913652192 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125953398;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125953399-125953587%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125953399-125953587&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.458338519709 0.909803001774 1.06399943031 125823294 125823482 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125823293;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125953399-125953587%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125823294-125823482&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSPAPSLLHAFQCWPAPCPQALPLAGLILSVPAEAPQLDVAEPRVSVLEGGEAWLECSLRGGTPPAQLLWLGPQQQKVDPGTSGFMLHPEGAQLRLGIYDADPAHHR Same 488506 chr11:125953399-125953587+ 832 832 34 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.33341733871 4.63471904762 0.8843 -8.35082698413 12.9855460317 0.923597141083 1.04164863397 1219 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 10.7417650794 0.5893 -11.0301603175 21.7719253968 0.995647361984 1.06842570299 1180 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0 ENST00000529072.1,ENST00000524962.2 NC,NCintron protein-coding gene protein-coding gene ENSG00000283703 867 509842 chr15:89333627-89333713- NoOverlap chr15 89333627 89333713 - 10.3481965476 29 0.642841545581 2.65682071139 7.69137583622 ENST00000268124.9,ENST00000442287.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;89333626;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89333627-89333713-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A89333627-89333713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.895250990004 0.909652657123 1.04614297889 89876858 89876944 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;89876857;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89333627-89333713-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A89876858-89876944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RARAGSSSGALGLQLRPRVRPQRRAAAAAAAAAAAAAAATAASAAASAILGGR Same 511577 chr15:89333627-89333713- 857 857 10 0 569 89330211 89335145 Best 867 867;1516;6244;11372;42877;43590;44649;44946 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:89330211-89335145&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.804597701149 0.924019607843 17.0874413793 0.8321 3.62343448276 13.4640068966 0.966385971566 1.04939839822 991 Best 991 991;1902;3329;4879;5570;8149;31414;32743 18.6225965517 0.4856 4.26492758621 14.3576689655 0.927857800193 0.945132283348 1954 Best 1954 1954;9286;12402;21990;33671;37713;45376;71871 0.0 0.101437938787 chr1:153775114-153776164+ ENST00000268124.9,ENST00000631044.2 CDS,NC under investigation POLG contains a series of NPRs in the first and second coding exon that are out of frame to the annotated CDS (the POLG CDS is conserved in vertebrates). These NPRs in combination find a prospective alternative CDS with a STOP codon conserved in therian mamamls - found precisely at the terminus of the most 3' NPR - although no ATG initiation codon has been identified. However, a potential non-ATG initiation codon [CTG] at chr15:89333809 corresponds well with the beginning of the NPR series, creating a predicted 261aa CDS that is conserved in therian mammals. We have identified additional support for the translation of this alternative CDS within the mass spectrometry datasets provided by Pandey et al, specifically peptides [AAAAQPJGHPDAJER] and [AAAAAAAAAAAAAAATAASAAASAJJGGR] in CD8 cells. However, at the present time there is no evidence to suggest how this alternative CDS may be transcribed and translated, and it is unclear how to construct a transcript model. 868 531848 chr19:49639968-49640123- NoOverlap chr19 49639968 49640123 - 6.73307304657 52 0.761056335135 1.62729034745 5.10578269913 ENST00000246792.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49639967;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49639968-49640123-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49639968-49640123&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.9474650427 0.909533813965 1.00551453253 50143225 50143380 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;50143224;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49639968-49640123-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A50143225-50143380&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRQQQRWRHEQRGGVRDRAGAAPGRGTWARGPPAQRDTQAGGRGRRRRGQER Same 533323 chr19:49639968-49640123- 805 805 63 0 570 49639968 49642300 Best 868 868;30838;31024;64121 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49639968-49642300&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.794871794872 0.855263157895 -2.50238846154 0.8602 -6.00520769231 3.50281923077 0.030639981475 0.702170600084 28431 23278 23278;28431;64936;67214 -14.5137615385 0.5813 -19.3124942308 4.79873269231 -0.0303618528787 0.640434897425 57433 32520 32520;39162;57433;69715 0.0 0.143869887586 chrX:48829124-48829825+ ENST00000246792.3,ENST00000601532.1 CDS,NC not annotated putative regulatory region 869 510114 chr15:98520310-98520381- NoOverlap chr15 98520310 98520381 - 13.341129257 24 0.851895933471 -2.90248327454 16.2436125316 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;98520309;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A98520310-98520381-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A98520310-98520381&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.948852394929 0.909271094698 0.992288209672 99063539 99063610 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;99063538;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A98520310-98520381-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A99063539-99063610&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LMSFLASFTPAGMYPVDVLEDDPDAQQEAALAYHASLR Same 511849 chr15:98520310-98520381- 791 791 78 0 571 98520256 98520381 Best 869 869;12033 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:98520256-98520381&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.486111111111 0.235294117647 19.589225 0.9687 -4.92420416667 24.5134291667 1.0017376278 0.974989295395 722 Best 722 722;1876 23.0197791667 0.4643 -7.4419625 30.4617416667 0.959251639845 1.03083314285 1710 Best 1710 1710;3154 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 870 499211 chr13:26094743-26094814- NoOverlap chr13 26094743 26094814 - 7.02723348637 24 0.71220785331 -7.40065404664 14.427887533 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;26094742;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A26094743-26094814-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A26094743-26094814&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.60913068871 0.909039868056 0.935683266545 26668881 26668952 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;26668880;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A26094743-26094814-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A26668881-26668952&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HISLYFALPGGYAFSQTVACVATQEELVCSYNTTENK Same 501217 chr13:26094743-26094814- 746 746 124 0 572 26094743 26094814 Best 870 870 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:26094743-26094814&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.321428571429 11.6117708333 0.7753 -7.55270833333 19.1644791667 0.845910807459 0.956451551647 1488 Best 1488 1488 20.9499208333 0.4002 -1.99084166667 22.9407625 0.912590509848 1.05137055795 2043 Best 2043 2043 0.140152632193 chr13:26019888-26019985+ 0.48264835261 chr13:26019888-26019985+ pseudogene extension ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 (ATP8A2) pseudogene extended (ENSG00000233963) 871 595378 chrX:85153749-85153802+ NoOverlap chrX 85153749 85153802 + 5.95786121819 18 0.871407983859 -7.9365997629 13.8944609811 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;85153748;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A85153749-85153802%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A85153749-85153802&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.393824074189 0.908677641871 0.956463481216 84408755 84408808 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;84408754;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A85153749-85153802%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A84408755-84408808&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NYGYMGTKCDQLWSTLDLILVVSLLGIR Same 596021 chrX:85153749-85153802+ 781 781 90 0 573 85153749 85153802 Best 871 871 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:85153749-85153802&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.462962962963 0.0 9.8893 0.8835 -14.8971 24.7864 0.69308874354 0.972978265566 2116 Best 2116 2116 22.53025 0.6237 -15.1854166667 37.7156666667 0.98005415551 0.969404784179 1420 Best 1420 1420 0.0 0.0 pseudogene meprin A subunit beta (MEP1B) unprocessed pseudogene (ENSG00000283446) 872 563859 chr5:35789809-35789919+ NoOverlap chr5 35789809 35789919 + 6.20798911678 37 0.913603418021 -0.497318784555 6.70530790133 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;35789808;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35789809-35789919%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A35789809-35789919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.899634453633 0.908489873013 1.04550395611 35789911 35790021 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;35789910;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35789809-35789919%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A35789911-35790021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSFIYVTIFGILIIEFGEKEVSILTAHYEPVLEAANVKLSEVDTEWSMLKLEIYAR Same 564847 chr5:35789809-35789919+ 823 823 49 0 24 35787955 35790367 24 24;33;42;72;207;789;797;872;1069;2173;48626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:35787955-35790367&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.369369369369 0.0 7.03454594595 0.9997 -2.69794864865 9.73249459459 0.908131368958 1.07059589536 1273 20 20;37;72;448;957;1150;1273;1329;1548;1888;12605 11.8420972973 0.5941 -6.01902432432 17.8611216216 0.954934653379 1.04766828869 1761 77 77;86;112;376;544;1371;1761;1786;2084;2608;14924 0.0 0.0 ENST00000506526.5,ENST00000356031.7,ENST00000510433.1 NC,CDSintron,AntiNCintron coding exon(s) SPEF2 5 consecutive coding exons including an alternative termination codon 873 541710 chr2:206670493-206670552- NoOverlap chr2 206670493 206670552 - 11.5960349679 20 0.934205386435 -5.35183995804 16.9478749259 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;206670492;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A206670493-206670552-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A206670493-206670552&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.826470463236 0.907345135312 0.981277172536 207535217 207535276 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;207535216;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A206670493-206670552-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A207535217-207535276&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TMVSTRNELPRTHESINALHRER Same 543082 chr2:206670493-206670552- 806 806 67 0 574 206670493 206670552 Best 873 873 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:206670493-206670552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.433333333333 0.355029585799 7.63438 0.9997 -10.687865 18.322245 0.821804818865 0.970731183188 1594 Best 1594 1594 5.916235 0.4031 -11.451405 17.36764 0.484577021669 1.01824485766 3590 Best 3590 3590 0.0 0.0 ENST00000452335.2 CDSintron pseudo-exon DYTN pseudo-exons 874 566842 chr5:472967-473221- NoOverlap chr5 472967 473221 - 7.62432460738 85 0.451772963706 3.6402964045 3.98402820288 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;472966;255;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A472967-473221-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A472967-473221&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.904118547666 0.906515130319 0.955718830698 473082 473336 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;473081;255;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A472967-473221-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A473082-473336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APSPASPTPAPAQNSESAAPAPAEPPEGEPGAGPAPGAGPERRGLPSAHARSAAARRVHSRRSFQRPRARRRPALLKLASLPPSCHAPPHALEQEETPL Same 567846 chr5:472967-473221- 862 862 12 0 575 472967 473380 Best 874 874;9738 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:472967-473380&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.823529411765 1.18055555556 14.2456223529 0.5783 7.13495294118 7.11066941176 1.13248876951 1.00464978816 4 Best 4 4;9863 14.7268317647 0.4921 4.63250235294 10.0943294118 0.850691833028 0.890786950775 2314 Best 2314 2314;22552 0.0 0.114357818764 chr16:67270738-67271210+ ENST00000342584.3 NC coding exon(s) SLC9A3 alternative final exon 875 554453 chr3:187745322-187745399+ NoOverlap chr3 187745322 187745399 + 14.1557577886 26 0.881152760416 10.1535000341 4.00225775445 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;187745321;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187745322-187745399%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A187745322-187745399&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.986963113601 0.90646595082 0.751862761986 187463110 187463187 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;187463109;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187745322-187745399%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A187463110-187463187&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NNDHEQRRRQRHQRQQRRRRQ*QQQRRQQQQ Same 555403 chr3:187745322-187745399+ 839 839 36 8 576 187739883 187745776 Best 875 875;1104;7504;8158;11541;34107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:187739883-187745776&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.769230769231 0.980571428571 2.66229615385 0.8966 -1.60281923077 4.26511538462 0.209149137657 0.736409018895 8409 3665 3665;8409;10256;24508;44991;56743 -0.928357692308 0.5423 -9.54795769231 8.6196 0.21868784852 0.788046582624 5778 Best 5778 5778;12942;12969;14939;33269;59538 0.0 0.0 ENST00000450760.1,ENST00000406870.6,ENST00000470319.1 NC,AntiUTR5intron,AntiNCintron under investigation Finds a putative 38aa CDS antisense to the 5' UTR of BCL6. However, it is difficult to interpret the accuracy of the PhyloCSF signal here as the region has deep conservation over a wider region, presumptively due to being the promoter of BCL6, and the 38aa CDS has very low complexity. There is also very little transcriptional support for the locus in human or mouse. 876 519192 chr17:75590907-75590987+ NoOverlap chr17 75590907 75590987 + 6.62732590128 27 0.807553780988 -3.02099251844 9.64831841972 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;75590906;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A75590907-75590987%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A75590907-75590987&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.747757805718 0.905736019829 1.04426016894 73586988 73587068 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;73586987;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A75590907-75590987%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A73586988-73587068&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ACFPPQTFGGPVLLVLNPHRSLPLFSPEVQASYHPR Same 520605 chr17:75590907-75590987+ 816 816 60 0 577 75590633 75590987 Best 876 876;1396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:75590633-75590987&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.567901234568 0.157894736842 10.0071444444 0.9731 -10.2448111111 20.2519555556 0.999456163245 0.930613445191 742 Best 742 742;1258 5.45782222222 0.6349 -20.0547592593 25.5125814815 0.839327503934 1.08209732146 2352 273 273;2352 0.0 0.167474678717 chr17:18126347-18126456+ ENST00000582561.2,ENST00000610510.4,ENST00000578564.5 NC,CDSintron,NCintron coding exon(s) MYO15B two cassette exons 877 549339 chr22:50684585-50684656+ NoOverlap chr22 50684585 50684656 + 18.9130916595 24 0.841702906844 10.2412292138 8.67186244577 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50684584;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50684585-50684656%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50684585-50684656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.935979777673 0.905706958929 0.93936410264 51123013 51123084 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51123012;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50684585-50684656%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51123013-51123084&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALTSPFPQVAIIAGNFELAEVIKTHKDSDVGEFCPPGRPC None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.513888888889 0.436363636364 29.1398125 0.9988 16.5655416667 12.5742708333 1.02481720096 0.97394097019 533 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 53.1918125 0.9095 20.8697208333 32.3220916667 0.976312613417 1.0378560623 1491 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.280353819223 chr19:50704120-50704186- ENST00000262795.5 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 878 476342 chr1:237942358-237942459- NoOverlap chr1 237942358 237942459 - 4.45655292974 34 0.531557452461 -8.51383533888 12.9703882686 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;237942357;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237942358-237942459-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A237942358-237942459&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.205835097377 0.905596528215 0.91257209079 238105658 238105759 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;238105657;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237942358-237942459-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A238105658-238105759&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TVGYILPVLINPLAQLITFLTIFIGTLNTMLGSH*FLI*TGLEIKILALTPILI Same 478236 chr1:237942358-237942459- 847 847 31 19 236 237940783 237943644 302 302;662;735;826;878;1214;1221;3426 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:237940783-237943644&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.352941176471 0.0 -0.844417647059 0.1203 -2.85498235294 2.01056470588 0.0121190228292 0.558056534343 35876 15205 15205;16524;19960;20662;24160;29790;35876;52414 32.47615 0.7142 -6.75585294118 39.2320029412 1.03596353409 0.955797576019 540 316 316;468;540;604;1096;1312;1906;1926 0.0 0.829872075018 chrM:4470-5511+ pseudogene mitochondrially encoded NADH dehydrogenase 2 (MT-ND2) pseudogene (ENSG00000283166) 879 503445 chr14:23101457-23101564- NoOverlap chr14 23101457 23101564 - 7.06963902546 36 0.881342878699 1.4704665494 5.59917247606 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23101456;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23101457-23101564-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23101457-23101564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.978240332794 0.905102996116 0.993539876584 23570666 23570773 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23570665;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23101457-23101564-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23570666-23570773&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PALQSECWKKENGFPAGVDNPHGEIYHPQSRCFFANLTSQLLPGDKPR Same 505284 chr14:23101457-23101564- 811 811 68 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.266009852217 11.1129111111 0.9747 1.84949444444 9.26341666667 1.00926497537 1.04457375958 659 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 18.4913944444 0.6668 1.58335277778 16.9080416667 1.02531351544 1.01344732603 694 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 880 581037 chr7:38249292-38249333- NoOverlap chr7 38249292 38249333 - 5.01507147721 14 0.788693064775 -14.4168143443 19.4318858215 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;38249291;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38249292-38249333-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A38249292-38249333&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0637922723044 0.905102301754 0.988460064794 38288893 38288934 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;38288892;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38249292-38249333-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A38288893-38288934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FSWLTVPEESLDKEHRCIVRHENNK None NA NA 0 578 38240099 38265655 Best 880 880;946;1212;1353;2319;3451;3622;4048;8280;41779;49225 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:38240099-38265655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.404761904762 0.583333333333 8.4553 0.9323 -21.2997142857 29.7550142857 0.495303536539 1.06485261081 3177 1335 1335;1528;1788;1910;2091;2312;3177;3446;5221;5413;7771 8.29292857143 0.4003 -31.3428571429 39.6357857143 0.465239604747 0.868935479829 3667 2500 2500;2518;2952;3009;3184;3667;3896;4112;4120;5226;6124 0.0 0.0 ENST00000436911.6,ENST00000610516.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 881 564629 chr5:82304663-82304815+ NoOverlap chr5 82304663 82304815 + 3.83274107923 51 0.807564884503 -4.37017643605 8.20291751528 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;82304662;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A82304663-82304815%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A82304663-82304815&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.53785107483 0.904847979663 1.06160562096 81600482 81600634 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;81600481;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A82304663-82304815%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A81600482-81600634&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPWNAFSHHGPVNVSINGIPCILFWAKRIMIKFKNQTWLDLTDEPFGQKVTVDPDNSNCSEESAR Same 565617 chr5:82304663-82304815+ 786 786 95 0 579 82304663 82304848 Best 881 881;16922 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:82304663-82304848&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.424836601307 0.144886363636 7.91238823529 0.9821 -4.1763 12.0886882353 1.02181700092 1.04579755726 559 Best 559 559;4049 24.4682862745 0.8122 -3.1600372549 27.6283235294 1.0067373698 1.01414373269 999 Best 999 999;2348 0.0 0.0891609513623 chrX:154434208-154434446+ ENST00000380167.8 UTR5 pseudogene ATP6AP1L has been switched to pseudogene ENSG00000205464 from coding based on the discovery of pseudo exons 882 552900 chr3:88128808-88129011+ NoOverlap chr3 88128808 88129011 + 6.59397206214 68 0.945088165731 2.31283675529 4.28113530686 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88128807;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88128808-88129011%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88128808-88129011&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.946022846768 0.904565021987 0.972658578101 88177958 88178161 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88177957;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88128808-88129011%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88177958-88178161&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VCFLFNIVNKYLSSENPLFFELRARYLIACERIPEAMALIKSCINHPEISKDLYFHQALFTCLFMSPVEDQLFREVLFETIFAYYHFNPTK Same 553842 chr3:88128808-88129011+ 804 804 78 0 293 88126134 88139310 388 388;882;969;1723;6190;10019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88126134-88139310&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.382352941176 0.549494949495 8.25472647059 0.9792 3.30084117647 4.95388529412 0.909880175976 0.924133410398 1269 384 384;810;1269;2625;2709;3294 23.8590779412 0.8853 1.44307647059 22.4160014706 1.04032271574 1.04336506865 476 Best 476 476;635;1080;1140;2139;2319 0.0 0.0 ENST00000473136.4,ENST00000462901.5 NC,AntiUTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 883 573698 chr6:9610632-9610706- NoOverlap chr6 9610632 9610706 - 8.02090803862 25 0.733592736706 -3.64706415892 11.6679721975 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;9610631;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9610632-9610706-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A9610632-9610706&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.758898326586 0.904430345967 0.999505045357 9610865 9610939 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;9610864;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9610632-9610706-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A9610865-9610939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSVCSCDLQHQNEISVSALGPGDITSHVSVYTIYPSGLQELYRHFLRLPGGPLLR Same 574727 chr6:9610632-9610706- 856 856 27 0 580 9610632 9610706 Best 883 883 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:9610632-9610706&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.493333333333 0.438596491228 17.3356 0.9473 -1.375416 18.711016 1.00334055203 0.983108925001 708 Best 708 708 32.90438 0.6905 1.208104 31.696276 1.04632951032 1.04108064846 385 Best 385 385 0.0 0.0 ENST00000492094.6 NC redundant PhyloCSF signals are accounted for elsewhere on the list 884 484448 chr11:57037857-57038108+ NoOverlap chr11 57037857 57038108 + 8.26832270729 84 0.917217808005 -2.60769407416 10.8760167814 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57037856;252;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57037857-57038108%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57037857-57038108&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01184381323 0.904380323884 0.973982734533 56805332 56805583 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;56805331;252;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57037857-57038108%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A56805332-56805583&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MYGAITSLWYFATSDCYILAAMAVDRYVAFCNPLHYPGVMSQRLCIKLLVSSYVMGFLNASINISFTFSLNFCKSKTINHFFCDEPPIIALPCSNIDLNIMLLTVFVGLNLMCTVMVVIISCIYVLVAILR Same 486393 chr11:57037857-57038108+ 765 765 119 0 338 57037567 57038422 463 463;582;884;1044;1236;1826;3363;6311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57037567-57038422&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.400793650794 0.104218362283 12.9277952381 0.9667 -5.3254547619 18.25325 0.937329114189 0.972609985871 1159 346 346;643;688;1159;1835;1855;2138;3085 40.1191535714 0.9117 -17.3176392857 57.4367928571 0.992172435362 1.13657097233 1237 792 792;938;1237;1246;1582;1841;2263;2401 0.116549907576 chr11:56988914-56989843+ 0.287941345098 chr7:141918876-141919820+ pseudogene OR5AK4P olfactory receptor family 5 subfamily AK member 4 pseudogene (ENSG00000283307) 885 538135 chr2:31376220-31376324- NoOverlap chr2 31376220 31376324 - 4.46065435069 35 0.50186443449 -10.8315229433 15.292177294 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;31376219;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A31376220-31376324-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A31376220-31376324&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.183692793758 0.903900515089 0.895489824841 31599086 31599190 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;31599085;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A31376220-31376324-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A31599086-31599190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CCWCYDCYFLALLLLLLLLLLLLLIL*QLLL*LLLLLLLLSILLPLLQLLLLLLVLLLVVLMLMLLLLLCYCYYCYHYGCD Same 539507 chr2:31376220-31376324- 777 777 108 18 581 31376220 31376324 Best 885 885 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:31376220-31376324&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.32380952381 0.0 -18.3336971429 0.61 -14.1137542857 -4.21994285714 0.313941277216 0.325330850969 5311 Best 5311 5311 -18.3336971429 0.1907 -14.1137542857 -4.21994285714 0.0717175822504 0.236335004708 14917 Best 14917 14917 0.0 0.0 ENST00000379416.3 CDSintron not annotated low complexity region 886 468170 chr1:181779441-181779545+ NoOverlap chr1 181779441 181779545 + 7.13044278451 35 0.863051586393 1.35029712064 5.78014566387 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;181779440;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A181779441-181779545%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A181779441-181779545&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.969572372017 0.90352526712 1.00032879002 181748577 181748681 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;181748576;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A181779441-181779545%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A181748577-181748681&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSFLFYPSLSVLLTHLCFLYSGRIPYKDMYKLVRVISPPLGLGENCPYRVACKVCLPVPSHDLPWDATSNPSSLSSAPPPLR Same 470037 chr1:181779441-181779545+ 810 810 76 0 582 181779441 181779545 Best 886 886 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:181779441-181779545&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.561904761905 0.494117647059 3.96436285714 0.9701 0.387991428571 3.57637142857 0.407983667034 0.738505090151 3920 Best 3920 3920 14.1664257143 0.986 1.67365428571 12.4927714286 0.740679350462 0.930448695386 2664 Best 2664 2664 0.0 0.195080043932 chr9:138101104-138101200+ ENST00000357570.9 CDSintron coding exon(s) CACNA1E partner of a mutually exclusive exon pair 887 492179 chr12:57619578-57619691+ NoOverlap chr12 57619578 57619691 + 5.18878933003 38 0.766130191581 -2.76917098933 7.95796031936 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;57619577;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57619578-57619691%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A57619578-57619691&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.680562887863 0.903137375932 1.06163610663 58013361 58013474 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;58013360;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57619578-57619691%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A58013361-58013474&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TYPGAGDTSDLKYPLATRLREALTEARFHQLFRGEEQEPELPEER Same 494160 chr12:57619578-57619691+ 825 825 62 0 115 57604808 57624781 137 137;276;887;2361;32008;57382;64750;68543 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:57604808-57624781&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.59649122807 0.493506493506 10.3113394737 0.9473 -4.56253421053 14.8738736842 1.05516288273 0.992473510267 198 192 192;198;227;1040;9332;22257;31301;59213 12.1551605263 0.6516 -11.5344736842 23.6896342105 1.02678021273 1.06043384414 667 Best 667 667;1211;1268;2339;27890;29446;30873;52552 0.0 0.105523416713 chr3:48633477-48633635- ENST00000474359.6,ENST00000593846.1 NC,AntiNC coding exon(s) SLC26A10 alternative final exon 888 491085 chr12:40420206-40420388+ NoOverlap chr12 40420206 40420388 + 11.9798130501 61 0.836304465015 -0.678721367091 12.6585344171 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40420205;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40420206-40420388%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40420206-40420388&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.942231607725 0.902891752884 0.941268660774 40814008 40814190 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40814007;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40420206-40420388%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40814008-40814190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSEYFIGEISTWSKGAYKSFNGRIFFFESSCPYTFCRHCIESGGDFNIEIKRNNDSEIEKITVLIDNNDVSIFGDTILVNGER Same 493062 chr12:40420206-40420388+ 817 817 71 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.371584699454 0.63321799308 17.3166852459 0.9707 -1.92920983607 19.245895082 0.943055862251 0.957675059962 1120 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 22.8460786885 0.4682 -0.97212295082 23.8182016393 1.06058891118 1.03873575865 220 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNC redundant PhyloCSF signals are accounted for elsewhere on the list 889 503457 chr14:23104810-23104878- NoOverlap chr14 23104810 23104878 - 8.92099125748 23 0.928474993449 -1.49460000059 10.4155912581 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23104809;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23104810-23104878-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23104810-23104878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.849983093265 0.902661948195 1.04095672028 23574019 23574087 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23574018;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23104810-23104878-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23574019-23574087&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EMLLLLLLLLLLPPLVLRVAASRCLHDETQKSVSLLRPPFSQLPSK Same 505296 chr14:23104810-23104878- 840 840 49 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.550724637681 0.191135734072 7.9330173913 0.9397 -5.31139130435 13.2444086957 0.772094952944 1.05789052348 1784 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 8.67430869565 0.4091 -7.25185652174 15.9261652174 0.587166609476 0.992142375155 3206 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 890 483241 chr11:1087755-1087877+ NoOverlap chr11 1087755 1087877 + 8.93775614624 41 0.578537627445 3.47176344765 5.46599269858 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1087754;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1087755-1087877%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1087755-1087877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.899459982356 0.902238790431 0.999880930349 1085744 1085866 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1085743;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1087755-1087877%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1085744-1085866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PCPPGPQDYCGQNSSLGSFSIITENVPCGTTGVTCSKAIKIFMGVSAAGPGDA Same 485171 chr11:1087755-1087877+ 886 886 4 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.585365853659 0.48046875 20.7339926829 0.8825 8.8772097561 11.8567829268 1.04371006326 1.05097808966 324 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 39.5053853659 0.9141 10.753895122 28.7514902439 0.973873812461 1.03961325018 1526 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0618304789513 chr11:1235303-1235413+ 0.270821779965 chr11:1177231-1177344+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 891 655074 chr17:59353314-59353409+ Extension chr17 59353314 59353409 + 9.3660843512 32 0.959990367742 5.44965304434 3.91643130686 chr17:59353314-59353526+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;59353313;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A59353314-59353409%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A59353314-59353409&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.03211680691 0.902195147301 0.826661691255 57430675 57430770 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;57430674;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A59353314-59353409%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A57430675-57430770&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CQTTAFTCVFRCFPCDPSCGSASWAAPEFTPHSAAPMVK Same 655699 chr17:59353314-59353409+ 867 867 24 0 583 59353314 59353409 Best 891 891 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:59353314-59353409&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.625 0.444444444444 11.662 1.0 4.540353125 7.121646875 0.971649458577 0.955643656429 954 Best 954 954 22.57476875 0.8941 7.843065625 14.731703125 0.964689999601 0.953213489376 1638 Best 1638 1638 0.0 0.249955917038 chr16:30095252-30095482- ENST00000312655.8,ENST00000582192.1,ENST00000581865.1 Extension5p,NC,NCintron under investigation YPEL2 potential non-ATG start 892 475095 chr1:182390691-182390783- NoOverlap chr1 182390691 182390783 - 5.65725810874 31 0.675695577591 -4.42416785994 10.0814259687 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;182390690;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A182390691-182390783-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A182390691-182390783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.535784154214 0.901937438286 1.0236016363 182359826 182359918 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;182359825;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A182390691-182390783-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A182359826-182359918&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SDSSGSRSSCFGFVAYSVNSGERSRVKIKTLTHQPACSDTPR Same 476976 chr1:182390691-182390783- 880 880 12 0 584 182390538 182400521 Best 892 892;1504;2032;4516 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:182390538-182400521&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.569892473118 1.06896551724 15.8922645161 0.8877 -3.22821935484 19.120483871 1.02622218335 0.957240694215 515 Best 515 515;2315;3190;6985 14.2923225806 0.3579 -5.11505806452 19.4073806452 0.894872480504 1.0496690553 2130 Best 2130 2130;3443;4050;6413 0.0 0.130491465423 chr5:137753149-137754066- ENST00000311223.9,ENST00000480604.5,ENST00000331872.10,ENST00000462444.1 UTR5,NC,UTR5intron,NCintron coding exon(s) GLUL first exon 893 565154 chr5:122373512-122373583+ NoOverlap chr5 122373512 122373583 + 8.12289570769 24 0.999337504133 -2.24807097514 10.3709666828 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;122373511;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122373512-122373583%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A122373512-122373583&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.789331402765 0.90149576824 1.03768772677 121709207 121709278 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;121709206;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122373512-122373583%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A121709207-121709278&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DNNSAFTMKPSADVLEIITCTILIFMSIVGNTFVLFYK Same 566145 chr5:122373512-122373583+ 940 940 -47 0 83 122373512 122374412 96 96;483;792;813;893;6475 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:122373512-122374412&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 0.505263157895 8.28420416667 0.9998 -6.55687083333 14.841075 0.895843001257 1.03214521223 1305 592 592;628;689;1305;1845;2458 6.769675 0.6292 -11.3510666667 18.1207416667 0.685807284536 1.04514455697 2860 1664 1664;1963;2350;2533;2860;3772 0.0 0.0 ENST00000261367.11,ENST00000508017.5,ENST00000507143.1 UTR5intron,NCintron,AntiNCintron pseudo-exon SNCAIP untranscribed pseudo-exon. Subsequent reanalysis following the completion of this study suggests it may in fact be an ancient vomeronasal receptor unitary pseuodgene. 894 597191 chrX:130516599-130516679- NoOverlap chrX 130516599 130516679 - 5.34297772856 27 0.662333104448 -7.24160002338 12.5845777519 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;130516598;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A130516599-130516679-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A130516599-130516679&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.396455551643 0.901224606145 0.950673667272 129650573 129650653 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;129650572;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A130516599-130516679-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A129650573-129650653&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLHDAHLKTNYQ*KDILRPLKKGGYITSNNK Same 597841 chrX:130516599-130516679- 821 821 73 13 585 130515787 130523549 Best 894 894;1418;1908 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:130515787-130523549&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.358024691358 0.0 9.75838518519 0.9527 -9.7112962963 19.4696814815 0.981482102553 0.935206070382 889 Best 889 889;1101;1197 14.8728185185 0.3872 -9.99243333333 24.8652518519 0.917194934885 1.06009355314 2029 Best 2029 2029;2218;2591 0.129569871163 chr2:185743133-185743294+ 0.302603891044 chr2:185743133-185743294+ ENST00000458525.1 NCintron pseudogene extension fibrous sheath interacting protein 2 (FSIP2) pseudogene extended (ENSG00000274775) 895 488865 chr11:70895416-70895568- NoOverlap chr11 70895416 70895568 - 5.87186663934 51 0.752045382126 -0.127674577283 5.99954121662 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;70895415;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A70895416-70895568-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A70895416-70895568&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.846760131424 0.901038848459 1.04368643465 70741521 70741673 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;70741520;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A70895416-70895568-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A70741521-70741673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WPFPFLVPLVPTRRRVFGAPPLSHRPAIGWAQSCNLDEPTGLFPPAPRFHRTCSGEQSHWTGSGELSK Same 490853 chr11:70895416-70895568- 833 833 62 0 586 70895416 70895568 Best 895 895 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:70895416-70895568&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.653594771242 0.37684729064 6.57479411765 0.7555 -0.61422745098 7.18902156863 0.719168469167 1.0280035492 2013 Best 2013 2013 6.57479411765 0.2361 -0.61422745098 7.18902156863 0.312850808666 0.80704342027 4499 Best 4499 4499 0.0 0.0 ENST00000601538.5,ENST00000460048.1 CDSintron,NCintron coding exon(s) SHANK2 cassette exon 896 576936 chr6:167359306-167359401- NoOverlap chr6 167359306 167359401 - 10.1151312243 32 0.604124704356 3.54640958644 6.56872163783 ENST00000366827.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;167359305;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167359306-167359401-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A167359306-167359401&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.891260558416 0.900679848137 1.02214193138 167772794 167772889 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;167772793;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167359306-167359401-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A167772794-167772889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FYPNGSKEIVFPDGTVEHLKDGQEETLFPDGTIVR Same 577974 chr6:167359306-167359401- 884 884 12 0 445 167358152 167371211 636 636;896;36272 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:167358152-167371211&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.839160839161 10.459075 0.663 0.553084375 9.905990625 0.763440002723 1.05197775033 1813 964 964;1813;18386 31.301584375 0.8684 3.55318125 27.748403125 1.02130927017 1.04908249389 768 Best 768 768;1256;19343 0.0 0.34485719329 chr13:24883963-24884083- ENST00000366827.6,ENST00000508373.5,ENST00000515138.1 CDS,NC,AntiNC pseudo-exon TCP10 pseudo-exon 897 534338 chr2:89662657-89662983+ NoOverlap chr2 89662657 89662983 + 7.45264125075 109 0.366796368353 2.33786056102 5.11478068973 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89662656;327;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89662657-89662983%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89662657-89662983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.790185476636 0.900250058801 1.00422745998 91924806 91925132 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91924805;327;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89662657-89662983%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91924806-91925132&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TEGSHITIWCNVSGSQGPPEQNFQWSIYLPSSPEREVQIVSTMDPSFPYAIYTQRVRGGKIFIERVQGNPTLLNITDLQARDAGEYECHTPSTDKQYFGSYSAKMNLVGK Different 535714 chr2:89662603-89662983+ 950 950 -53 0 587 89662603 89662983 Best 897 897;35399 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89662603-89662983&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.54128440367 0.461035631889 4.60076146789 0.1453 1.61244587156 2.98831559633 0.193647107469 0.73545493639 9056 Best 9056 9056;25193 30.7337651376 0.6696 6.12901192661 24.604753211 1.0153669237 1.02747355966 845 Best 845 845;1528 1.00767977355 chr1:116616080-116616457- 0.906058692574 chr1:116616080-116616457- pseudogene immunoglobulin superfamily member 3 (IGSF3) pseudogene (ENSG00000283214) 898 584200 chr8:54720129-54720308+ NoOverlap chr8 54720129 54720308 + 4.5145933489 60 0.881182574197 -2.96761334737 7.48220669627 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;54720128;180;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54720129-54720308%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A54720129-54720308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.728467307735 0.899897690928 1.06436232724 55632689 55632868 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;55632688;180;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54720129-54720308%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A55632689-55632868&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTGDVDCHFKIKKNLKNASISLESTKSPGLFVGLQSDGQAKPMIYTKDENVCFYPQVIQCMFTLK Same 585131 chr8:54720129-54720308+ 787 787 111 0 588 54720129 54720308 Best 898 898 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:54720129-54720308&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4 0.141620771046 8.28653 0.9251 -2.99309833333 11.2796283333 0.997677393778 1.05332485915 763 Best 763 763 17.2230633333 0.6875 -3.99221 21.2152733333 1.02030416197 1.04926633793 782 Best 782 782 0.0 0.0 ENST00000521465.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 899 479243 chr10:122785959-122786165+ NoOverlap chr10 122785959 122786165 + 14.3122912455 69 0.885572594797 3.01325366095 11.2990375846 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122785958;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122785959-122786165%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122785959-122786165&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.931381851514 0.899775993058 0.961901104205 124545475 124545681 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124545474;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122785959-122786165%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124545475-124545681&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLICHYPSMSIHPRLEDILGCPYDSVEIFNGPRIASLSMGKFCAPETVIFFSSSHIMTVVFQSDSMKTNTGFYALFNAIPQGER Same 481148 chr10:122785959-122786165+ 843 843 56 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.458937198068 0.185983827493 21.9672376812 0.9597 4.28067101449 17.6865666667 0.947958931043 0.964988084518 1102 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 24.795415942 0.4333 1.48949855072 23.3059173913 1.02582794673 1.04273777441 681 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.0 0.117936519277 chr10:122635991-122636199+ ENST00000439464.6 NC pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 900 477525 chr10:68827999-68828274+ NoOverlap chr10 68827999 68828274 + 8.06650647813 92 0.459701420748 4.96284460827 3.10366186986 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;68827998;276;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A68827999-68828274%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A68827999-68828274&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.958042532257 0.899270949433 0.881814013319 70587756 70588031 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;70587755;276;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A68827999-68828274%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A70587756-70588031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGASRPVQLAPGSLALVLCRLEAQKAAGAAEEPGGRAVFRAFRRANARCFWNARLARAASRLAFQGWLRRGVLLVRAPPACLQVLRDAWRRRALRPPRGFRIRAVGECGTR Same 479419 chr10:68827999-68828274+ 866 866 34 0 589 68827999 68828274 Best 900 900 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:68827999-68828274&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.789855072464 1.0368852459 9.64067391304 0.734 4.63480217391 5.00587173913 0.914204649458 0.916648304125 1253 Best 1253 1253 14.7373336957 0.7041 -2.26952826087 17.0068619565 1.00474455571 1.0351103644 1040 Best 1040 1040 0.793524876922 chr10:68827624-68827933+ 0.609920118161 chr10:68827624-68827933+ ENST00000298596.10 CDSintron coding exon(s) STOX1 5' extension 901 595227 chrX:56563562-56563594+ NoOverlap chrX 56563562 56563594 + 4.85250013525 11 0.843287070753 -13.0698726394 17.9223727746 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;56563561;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A56563562-56563594%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A56563562-56563594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0982953772652 0.899092440522 0.942530829483 56589995 56590027 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;56589994;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A56563562-56563594%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A56589995-56590027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRGGDQQAERLPELLGVR Same 595871 chrX:56563562-56563594+ 685 685 216 0 590 56563562 56563899 Best 901 901;12816;20244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:56563562-56563899&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.757575757576 0.868421052632 0.888718181818 0.8269 -18.7806727273 19.6693909091 0.220626602058 0.983222105814 7953 7515 7515;7953;72709 -13.9382272727 0.4036 -27.2364090909 13.2981818182 0.0091972689549 0.754533760783 31092 5480 5480;31092;70650 0.0 0.0 under investigation UBQLN2 potential non-ATG start 902 585612 chr8:144049636-144049896+ NoOverlap chr8 144049636 144049896 + 5.73757920354 87 0.58759143355 0.711451731879 5.02612747166 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144049635;261;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144049636-144049896%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144049636-144049896&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.817773480459 0.89877792954 1.01217949058 145104537 145104797 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145104536;261;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144049636-144049896%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145104537-145104797&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTLVASLPVGLDFVCLQEVFDLRRARRLVNRLAPNLGPLLYDVGTLGLQPGRHLKLLDSGLLLASRYPLLRATFRCFPHARGEDALASKGLPSAQVLAYPVQPAEGAGVRPR Same 586550 chr8:144049636-144049896+ 782 782 120 0 591 144049161 144051191 Best 902 902;1476;2944;3502;6411;8419;8554;19953;27554 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144049161-144051191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.689655172414 0.904007916873 9.18098390805 0.892 -0.828444827586 10.0094287356 0.99153830717 1.0634142512 822 Best 822 822;1234;1275;2096;2721;3466;4144;4232;11683 24.3156632184 0.8161 -5.18635402299 29.5020172414 1.00612897516 1.0396192784 1010 Best 1010 1010;1721;1924;2036;2359;2452;2682;3550;3684 0.0 0.329645702427 chr16:68370859-68372181- ENST00000528912.1 NC pseudogene unitary pseudogene (ENSG00000204791) 903 579479 chr7:134209687-134209749+ NoOverlap chr7 134209687 134209749 + 3.00884284576 21 0.83250171664 -10.0543380124 13.0631808582 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;134209686;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134209687-134209749%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A134209687-134209749&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0319350178112 0.898436347447 0.94963285571 133894439 133894501 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;133894438;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134209687-134209749%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A133894439-133894501&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPPTREADTSKLPPISPPHSKPPPNLSPQAAHSLQQVQEEK Same 580522 chr7:134209687-134209749+ 772 772 131 0 334 134208697 134210967 457 457;654;903;1140;1971;3155;4173;9542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:134208697-134210967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539682539683 0.605769230769 11.3833190476 0.9741 -6.55192857143 17.935247619 0.910911626438 0.983459753399 1266 146 146;1038;1039;1252;1266;1962;1997;10575 12.0841571429 0.3748 -8.14677142857 20.2309285714 0.67094502509 1.04647709265 2929 15 15;2334;2668;2929;2944;3198;3972;9142 0.0 0.0 ENST00000285928.2 CDSintron coding exon(s) LRGUK alternative large final exon 904 581620 chr7:81590981-81591064- NoOverlap chr7 81590981 81591064 - 4.48916786377 28 0.866013798516 -5.84944646699 10.3386143308 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;81590980;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81590981-81591064-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A81590981-81591064&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.467086777761 0.897826046736 1.02530496983 81220297 81220380 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;81220296;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81590981-81591064-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A81220297-81220380&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSECLVYFNFLIQLDFCFTATLEIDEDYPLFQSIYRVTATDEVFANGDR Same 582579 chr7:81590981-81591064- 854 854 50 0 592 81560120 81607572 Best 904 904;925;973;1260;1465;2153;3581;4237;4691;5577 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:81560120-81607572&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.404761904762 0.589473684211 5.65337857143 0.9906 -6.89599285714 12.5493714286 0.810536448112 1.072888933 1628 1152 1152;1609;1628;2206;2439;2771;3071;3088;3130;3532 5.89420714286 0.4122 -10.3401928571 16.2344 0.616295845472 1.02648762247 3116 2526 2526;2821;2931;3052;3114;3116;3529;3585;4138;5392 0.0 0.0 ENST00000413944.2 NCintron pseudogene unitary pseudogene ENSG00000233491 905 500533 chr13:113407827-113408024- NoOverlap chr13 113407827 113408024 - 11.9855364146 66 0.744693906333 -0.51999709202 12.5055335066 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;113407826;198;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113407827-113408024-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A113407827-113408024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.965066000519 0.897797720201 0.953002867733 114062142 114062339 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;114062141;198;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113407827-113408024-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A114062142-114062339&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADRPPGTEAGGSRPSHQPQTQEATQRPTRFQLLQAKFLGTGRERYLKRTREVGRLISKDKQGPGGGLVGATINKLLEKTKEPAPKPCLSEKPR None NA NA 0 100 113403390 113410417 120 120;186;577;628;905;2155;43193 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:113403390-113410417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.686868686869 0.385463984426 16.9855878788 0.82 -0.366507575758 17.3520954545 0.991103362573 0.958584863446 826 325 325;568;804;826;1027;2642;38380 24.0388469697 0.6279 -2.94261515152 26.9814621212 0.942307763405 1.02466792586 1864 110 110;511;615;1448;1864;2789;42035 0.0 0.0 coding exon(s) ADPRHL1 alternative final coding exon 906 543326 chr20:36207415-36207483+ NoOverlap chr20 36207415 36207483 + 15.0014130836 23 0.899791349461 2.59856528562 12.402847798 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;36207414;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36207415-36207483%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A36207415-36207483&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.93058389138 0.897679202624 1.03091686983 34795337 34795405 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;34795336;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36207415-36207483%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A34795337-34795405&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EMTSFQAGDQEGSLEDISKTSVANKIRIFETHGAETR Same 544715 chr20:36207415-36207483+ 829 829 77 0 105 36205843 36208375 125 125;723;906;1185;1244;1425;3209;4167;4835;30161 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:36205843-36208375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.449275362319 0.575 19.736173913 1.0 5.39723478261 14.3389391304 1.03703147678 1.04008220391 398 172 172;398;1291;1366;1423;1562;1733;1995;6918;10311 25.4187521739 0.5026 6.67293478261 18.7458173913 0.97529533911 0.992148823355 1508 Best 1508 1508;2023;2148;2169;2610;3152;3488;3607;4506;5668 0.0 0.0129111209148 chr11:75587059-75588184- ENST00000479336.1,ENST00000202028.9 NC,CDSintron coding exon(s) EPB41L1 three consectutive cassette exons 907 537901 chr2:25744092-25744166- NoOverlap chr2 25744092 25744166 - 9.71071599483 25 0.943179674983 1.78549210727 7.92522388756 ENST00000336112.8,ENST00000404843.5,ENST00000435504.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;25744091;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A25744092-25744166-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A25744092-25744166&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.92897734574 0.895897166563 1.04213325484 25966961 25967035 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;25966960;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A25744092-25744166-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A25966961-25967035&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LERAPHWNWQELEAGEVRESFYPVVQR Same 539273 chr2:25744092-25744166- 858 858 49 0 457 25743963 25744166 657 657;907 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:25743963-25744166&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586666666667 0.16339869281 7.207132 0.995 -2.213948 9.42108 0.743459639179 1.03330475274 1907 1184 1184;1907 2.217168 0.8126 -13.296364 15.513532 0.444575930184 1.0081739392 3756 3142 3142;3756 0.0 0.0888332608983 chr18:33742888-33746595+ ENST00000336112.8 CDS under investigation The PhyloCSF signal for ASXL2 changes frame in the final exon and is restored to the orginal frame after ~200bp. This sequence conformation is conserved in mammals, and while this could conceivably indicate a programmed frameshift, it could instead be explained by an unknown splice variant that causes this exon to be translated in a different frame. 908 549333 chr22:50676622-50676693+ NoOverlap chr22 50676622 50676693 + 16.422195673 24 0.747250197096 2.01922494794 14.402970725 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50676621;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50676622-50676693%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50676622-50676693&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.926325177395 0.895721220569 1.03262420119 51115050 51115121 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51115049;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50676622-50676693%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51115050-51115121&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGIFSTFSLSEQFRYKRRVYAQNLIDDKQFAKLHTK None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 1.12941176471 23.637175 0.9665 6.15660416667 17.4805708333 1.02015276284 1.02365595824 574 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 67.7001125 0.951 7.08425833333 60.6158541667 1.00195625914 1.04309031862 1081 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.278370573107 chr19:50715659-50715730- ENST00000262795.5 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 909 553207 chr3:120368031-120368084+ NoOverlap chr3 120368031 120368084 + 9.10035548939 18 0.902956011631 -6.17052217987 15.2708776693 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;120368030;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120368031-120368084%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A120368031-120368084&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.680570865233 0.89548745973 0.962323293326 120086878 120086931 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;120086877;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120368031-120368084%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A120086878-120086931&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YLCHITETDVNNQLFRIIHKYPSK Same 554156 chr3:120368031-120368084+ 845 845 64 0 11 120366477 120368084 11 11;568;909;1181;1188;1356;8610 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:120366477-120368084&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.407407407407 0.0 8.82624444444 0.9356 -6.37537777778 15.2016222222 0.695650262028 1.03473362033 2108 1029 1029;1399;2108;2270;2767;2983;4768 16.85305 0.478 -6.79795555556 23.6510055556 0.802941658963 1.05403903478 2462 683 683;1974;2462;2559;2585;3123;3204 0.0 0.0 pseudogene unitary pseudogene ENSG00000240661 910 486545 chr11:125954086-125954280+ NoOverlap chr11 125954086 125954280 + 6.83617690939 65 0.688515942743 2.0978738512 4.73830305819 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125954085;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125954086-125954280%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125954086-125954280&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.938114836977 0.895361351311 0.999574714852 125823981 125824175 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125823980;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125954086-125954280%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125823981-125824175&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YTCPLFCPHPHPGYPAPPNVTISRLTYGRHRREVQLQWAILGPGNLTGFLVQRKASALGPGAGAWETAASDIEPESR Same 488507 chr11:125954086-125954280+ 868 868 42 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641025641026 0.451621204323 10.3058846154 0.9393 3.14652 7.15936461538 0.995573873641 1.01828682004 782 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 29.3218430769 0.7622 7.97302615385 21.3488169231 0.979095477337 1.03443965679 1439 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.00144871909646 chr8:143946350-143946392- ENST00000524962.2,ENST00000531193.5 NC,NCintron protein-coding gene protein-coding gene ENSG00000283703 911 533906 chr2:68925700-68925762+ NoOverlap chr2 68925700 68925762 + 6.6585523919 21 0.81254945558 -6.35238103356 13.0109334255 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;68925699;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A68925700-68925762%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A68925700-68925762&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.575395752074 0.895324851947 0.970004541387 69152832 69152894 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;69152831;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A68925700-68925762%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A69152832-69152894&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YYPSTRGLTYTVLPSWVKNLAQYGKPIK Same 535290 chr2:68925700-68925762+ 822 822 89 0 437 68925700 68926822 623 623;911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:68925700-68926822&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.507936507937 0.765182186235 12.4322428571 0.975 -4.69076190476 17.1230047619 0.928574625304 1.00081429189 1199 1180 1180;1199 14.4232285714 0.348 -4.74855238095 19.1717809524 0.667266838935 1.02479077346 2939 Best 2939 2939;3064 0.0 0.0 pseudogene Polymorphic pseudogene GKN3P (ENSG00000283586); rs10187256 accounts for the PTC and rs564515112 accounts for the non-canonical splice site 912 582881 chr7:142812591-142812674- NoOverlap chr7 142812591 142812674 - 6.89928204673 28 0.793102922103 -1.94003207449 8.83931412122 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142812590;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142812591-142812674-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142812591-142812674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.78900566723 0.894617965792 1.05498278144 142510276 142510359 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142510275;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142812591-142812674-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142510276-142510359&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLLSDSGFYLCAWSVTLSWVGQTSVQKPHPLLSPNHTPQGPSLR None NA NA 0 398 142797471 142812824 558 558;912;6988;8200 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142797471-142812824&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.559523809524 0.157894736842 12.3014607143 0.9741 -7.783 20.0844607143 1.03520733614 0.940777797712 415 215 215;415;3289;15234 19.3067464286 0.5729 -9.58648214286 28.8932285714 1.05944058897 1.02686960336 231 Best 231 231;300;4131;46564 0.0 0.0 ENST00000417977.2 NC immunoglobulin segment overlaps an immunoglobulin region 913 565783 chr5:140228762-140228830+ NoOverlap chr5 140228762 140228830 + 16.1753085955 23 0.94570242917 3.97376954167 12.2015390539 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140228761;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140228762-140228830%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140228762-140228830&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.926466982123 0.89390712489 1.03188948287 139608347 139608415 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139608346;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140228762-140228830%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139608347-139608415&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MDSGCQAVLAACWAALCCCCLLDNLN Same 566778 chr5:140228762-140228830+ 818 818 95 0 593 140228762 140228830 Best 913 913 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140228762-140228830&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.63768115942 0.142857142857 17.4769086957 0.9671 5.57442608696 11.9024826087 0.981117356405 1.0384039204 891 Best 891 891 17.4769086957 0.3023 5.57442608696 11.9024826087 0.574055252885 0.849559931618 3251 Best 3251 3251 0.0 0.0 ENST00000261811.5,ENST00000504227.5 CDSintron,NCintron coding exon(s) CYSTM1 alternative final exon 914 505794 chr14:105623062-105623190- NoOverlap chr14 105623062 105623190 - 8.7130210164 43 0.534403948893 3.10024188944 5.61277912696 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105623061;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105623062-105623190-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105623062-105623190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.838919619088 0.89360055771 1.01235714261 106089399 106089527 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106089398;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105623062-105623190-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106089399-106089527&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PPPSCPELQLEESCAEAQDGELDGLWTTITIFITLFLLSVCYSATVTFFKVGR Same 507628 chr14:105623062-105623190- 937 937 -23 0 594 105621918 105644790 Best 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.612403100775 0.662387676508 14.724255814 0.7711 1.72444186047 12.9998139535 1.09031589364 1.02781436407 25 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 12.7758627907 0.6079 -4.43899534884 17.2148581395 0.983033037563 1.04054641585 1374 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.158073267004 chr15:23643993-23647742- immunoglobulin segment overlaps an immunoglobulin region 915 571416 chr6:41108964-41109041+ NoOverlap chr6 41108964 41109041 + 6.42990388091 26 0.80929861319 -3.58304237574 10.0129462567 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;41108963;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A41108964-41109041%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A41108964-41109041&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.700103361743 0.89350307256 1.03809723421 41076703 41076780 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;41076702;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A41108964-41109041%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A41076703-41076780&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TALELDPHSELDQKLQKHIMKNLLKKLIS Same 572444 chr6:41108964-41109041+ 859 859 56 0 409 41108763 41109041 573 573;915 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:41108763-41109041&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.410256410256 0.0 6.94636923077 0.7432 -3.80423461538 10.7506038462 0.596938561903 1.06423841131 2560 Best 2560 2560;2915 7.46151153846 0.3541 -7.30761538462 14.7691269231 0.537551692791 0.981192267766 3399 Best 3399 3399;3583 0.0 0.179928137345 chr1:167893853-167893941- ENST00000567255.2,ENST00000457653.7 NC,NCintron pseudogene extension ADCY10P1 pseudogene improved over its internal section (ENSG00000161912) 916 531038 chr19:37831171-37831245- NoOverlap chr19 37831171 37831245 - 10.0756719255 25 0.816535896849 2.33040401459 7.74526791096 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37831170;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37831171-37831245-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37831171-37831245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.931845612697 0.893396550424 1.03602574448 38321811 38321885 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38321810;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37831171-37831245-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38321811-38321885&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGEIHAWGLDQGNFLHSFQAHSSSVICIHSRPEIHTLLTAGSEGIVREWNLTYGNLLRQLNIDEDLQR Same 532505 chr19:37831171-37831245- 855 855 61 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.506666666667 0.217391304348 19.4549 0.9222 4.515592 14.939308 0.976555541318 1.0386955149 922 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 30.368752 0.4738 6.075216 24.293536 0.994549352743 1.0476030014 1202 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.17263995561 chr19:37892578-37895456- 0.485015566313 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 917 470904 chr1:26165819-26165923- NoOverlap chr1 26165819 26165923 - 9.72513720563 35 0.674296177615 4.93652854136 4.78860866427 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;26165818;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26165819-26165923-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A26165819-26165923&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.987473602122 0.893194009818 0.928559573544 26492310 26492414 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;26492309;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26165819-26165923-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A26492310-26492414&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSILPSSTPTLGSLAEASVESWEVVLDPLPDSQPLSQVQGVGVKGWLTMSSLFNKEDEDKLLPSEPCADQYVR None NA NA 0 99 26164164 26171664 118 118;480;770;917;2190;2831;39672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:26164164-26171664&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.504761904762 0.318181818182 19.3932657143 0.9718 10.4991114286 8.89415428571 1.05418650769 1.01497273293 207 Best 207 207;447;663;1046;1279;1936;69663 30.2260828571 0.5057 15.9697771429 14.2563057143 1.08693114007 0.936584472554 93 7 7;93;1782;1970;2239;2545;42994 0.0 0.0877484721419 chr8:144437027-144437099- protein-coding gene protein-coding gene ENSG00000282872 918 520688 chr17:22519346-22519480- NoOverlap chr17 22519346 22519480 - 6.41973773473 45 0.416960572383 -3.48036437432 9.90010210905 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;22519345;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A22519346-22519480-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A22519346-22519480&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.406289104176 0.892564468587 0.991612083618 22018672 22018806 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;22018671;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A22519346-22519480-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A22018672-22018806&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WFLISLVVVVIHVGLITYALLSLSVALVIGFVGFSSKPSPIYGGIVLIISGVVGCVIILNYGGGYMGLMVFFNLSR Same 522102 chr17:22519346-22519480- 1021 1021 -103 0 595 22519261 22522960 Best 918 918;21987;31911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:22519261-22522960&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.362962962963 0.0 4.68930666667 0.234 -1.84986888889 6.53917555556 0.204486070019 0.994055058839 8593 Best 8593 8593;22004;48706 8.53334666667 0.7332 -1.97023111111 10.5035777778 0.683681194565 0.909916556189 2868 2731 2731;2868;28944 0.0 0.766512567889 chrM:14149-14673- pseudogene mitochondrially encoded NADH dehydrogenase 6 (MT-ND6) pseudogene (ENSG00000283879) 919 729636 chr9:27455551-27455661- Extension chr9 27455551 27455661 - 5.32212705578 37 0.911485300819 -2.28461890668 7.60674596246 chr9:27455134-27455661- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;27455550;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A27455551-27455661-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A27455551-27455661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.774789437162 0.892224745234 1.06175521977 27455549 27455659 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;27455548;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A27455551-27455661-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A27455549-27455659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGPECWQWKTLLGCDLSLKSSRCLFASCKRKEAKEKTMSIALK Same 730230 chr9:27455551-27455661- 888 888 31 0 596 27455551 27455661 Best 919 919 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:27455551-27455661&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.522522522523 0.269090909091 4.98855405405 0.9961 -7.20518378378 12.1937378378 0.887893964605 1.07896056163 1334 Best 1334 1334 -4.98472432432 0.6956 -19.987827027 15.0031027027 0.387122233203 1.03212998625 4030 Best 4030 4030 0.0 0.0613630651437 chr1:46612904-46613371- ENST00000262244.5 Extension5p under investigation MOB3B potential non-ATG start 920 500724 chr14:22163804-22163866+ NoOverlap chr14 22163804 22163866 + 4.53794751281 21 0.840891272203 -8.05003334653 12.5879808593 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22163803;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22163804-22163866%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22163804-22163866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.274803683535 0.891994089671 0.971330768167 22631700 22631762 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22631699;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22163804-22163866%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22631700-22631762&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLSLHIVPSQPGDSAVYFCAASAQCSPGTCSPYSNLLWGLR None NA NA 0 597 22163645 22163866 Best 920 920;1074 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22163645-22163866&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.0 6.93829047619 0.9418 -10.3661142857 17.3044047619 0.759686453399 0.988121067116 1823 Best 1823 1823;1976 10.637052381 0.4405 -9.65007619048 20.2871285714 0.702662195339 1.05194222262 2801 2593 2593;2801 0.0 0.0 ENST00000390458.3 NC immunoglobulin segment overlaps an immunoglobulin region 921 490637 chr12:9555055-9555123+ NoOverlap chr12 9555055 9555123 + 5.96751736558 23 0.756893263142 -6.67849578287 12.6460131485 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9555054;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9555055-9555123%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9555055-9555123&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.504556389632 0.891167937129 0.967818061761 9707651 9707719 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9707650;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9555055-9555123%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9707651-9707719&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INGSEVIQAGGRKTNVWTIIPKKLGK Same 492613 chr12:9555055-9555123+ 838 838 83 0 598 9552442 9566349 Best 921 921;2868;3582;16714 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9552442-9566349&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.405797101449 0.40350877193 8.39412608696 0.9088 -11.9767173913 20.3708434783 0.849097188433 0.93433629607 1470 Best 1470 1470;2031;2243;2612 9.92611304348 0.4551 -13.9807043478 23.9068173913 0.798631781171 1.07543050518 2479 1430 1430;2479;2486;4527 0.952051322739 chr12:31135580-31135709- 0.924034997705 chr12:31135580-31135709- ENST00000518709.5 NCintron pseudo-exon AC092821.1 pseudo exons 922 482303 chr10:116834939-116835028- NoOverlap chr10 116834939 116835028 - 8.23693337639 30 0.911604486152 2.52954327265 5.70739010374 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;116834938;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A116834939-116835028-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A116834939-116835028&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.981033048246 0.890646053812 0.971925814928 118594450 118594539 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;118594449;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A116834939-116835028-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A118594450-118594539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QIDIFTVQLFSPLLQMESVGVYGFCGCKAKNKMKCDSRWEIAASGR Same 484228 chr10:116834939-116835028- 870 870 52 0 599 116834939 116836390 Best 922 922;13718;25613;56479 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:116834939-116836390&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.455555555556 0.818181818182 13.52626 0.9947 3.36977 10.15649 1.03369351559 1.04508437868 437 Best 437 437;6718;9282;51004 8.99318666667 0.376 -0.93517 9.92835666667 0.504453324603 0.847351411913 3518 Best 3518 3518;11846;63529;65009 0.0 0.0 ENST00000453491.2 NC coding exon(s) HSPA12A alternative first exon 923 501993 chr14:72562512-72562586+ NoOverlap chr14 72562512 72562586 + 15.7697839499 25 0.856119630732 11.6473878455 4.12239610434 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;72562511;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A72562512-72562586%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A72562512-72562586&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.968629205846 0.890360955573 0.734135448379 73029220 73029294 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;73029219;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A72562512-72562586%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A73029220-73029294&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAGGQAPHGPDAVLLTVPTAGPGPGPADPTGRRRRSTSADRVSLRGDLVTVKEKE Same 503895 chr14:72562512-72562586+ 898 898 25 0 600 72553290 72562586 Best 923 923;2491;2641;13239 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:72553290-72562586&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.586666666667 0.816993464052 20.697036 0.9918 12.492992 8.204044 1.01172439935 0.922185963493 639 Best 639 639;1850;5004;21038 22.51478 0.531 8.351356 14.163424 0.938746769457 0.910503734323 1893 Best 1893 1893;3067;7481;29220 0.0 0.0 ENST00000343854.10,ENST00000554300.1,ENST00000554782.1,ENST00000555303.1 UTR3,NC,CDSintron,AntiNCintron coding exon(s) RGS6 cassette exon leading to alternative frame final coding exon 924 539662 chr2:101450602-101450673- NoOverlap chr2 101450602 101450673 - 7.68469587217 24 0.839597161822 -2.46348762016 10.1481834923 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;101450601;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A101450602-101450673-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A101450602-101450673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.793277577602 0.890356814248 1.04134483526 102067064 102067135 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;102067063;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A101450602-101450673-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A102067064-102067135&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YHYDGICIKKSSFFYAQYCYLIGEKR Same 541020 chr2:101450602-101450673- 869 869 55 0 601 101450602 101452446 Best 924 924;1394 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:101450602-101452446&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.375 0.0 8.5509625 0.9734 -4.16072916667 12.7116916667 0.84047024095 1.06071234694 1504 Best 1504 1504;2006 9.59140833333 0.3976 -7.81742083333 17.4088291667 0.656992648393 1.02322993739 2976 Best 2976 2976;3862 0.0 0.0 ENST00000481179.5,ENST00000428343.5 NC,CDSintron coding exon(s) RFX8 two cassette exons previously on an NMD model 925 581622 chr7:81597741-81597815- NoOverlap chr7 81597741 81597815 - 8.09900811195 25 0.731049973297 -2.90007603645 10.9990841484 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;81597740;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81597741-81597815-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A81597741-81597815&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.762436082694 0.889376799129 1.01910618433 81227057 81227131 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;81227056;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81597741-81597815-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A81227057-81227131&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LWLISFIGSGVITATKIFNYETDPIRFLLIVDTGRLYR Same 582581 chr7:81597741-81597815- 904 904 21 0 592 81560120 81607572 904 904;925;973;1260;1465;2153;3581;4237;4691;5577 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:81560120-81607572&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.346666666667 0.0 5.472232 0.917 -12.737248 18.20948 0.815662573689 0.957720316985 1609 1152 1152;1609;1628;2206;2439;2771;3071;3088;3130;3532 7.843252 0.3576 -14.043612 21.886864 0.697108466606 1.08113258874 2821 2526 2526;2821;2931;3052;3114;3116;3529;3585;4138;5392 0.0 0.0 ENST00000413944.2 NC pseudogene unitary pseudogene ENSG00000233491 926 579830 chr7:149294805-149295095+ NoOverlap chr7 149294805 149295095 + 5.65557424816 97 0.400795828781 -1.08609178186 6.74166603002 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;149294804;291;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A149294805-149295095%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A149294805-149295095&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.610378174116 0.889109342965 1.05681575985 148991896 148992186 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;148991895;291;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A149294805-149295095%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A148991896-148992186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDLPPAVDAHTHYCAHIREKPYECAKLFGRLSTLLEHRHMHTGERPFQCTQCGCCFSRLSTLLEHRHTHISEKPFQCAQCDKRFTRLANLTVHQRVHLGERSFQCAQYSR Same 580800 chr7:149294805-149295095+ 750 750 176 0 602 149294749 149295236 Best 926 926;1752;12214 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:149294749-149295236&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.646048109966 0.76614010989 5.39434226804 0.4003 -1.01127938144 6.40562164948 0.624135680308 0.977838141721 2415 Best 2415 2415;5799;25797 35.012228866 0.7897 -19.6452886598 54.6575175258 1.01822647018 1.09547411531 807 Best 807 807;817;2257 0.252700971988 chr7:149070423-149072473- 0.436429562243 chr7:149431776-149432932- ENST00000378052.5 NC pseudogene zinc finger family pseudogene (ENSG00000244560) 927 572574 chr6:111259542-111259622+ NoOverlap chr6 111259542 111259622 + 5.93999634186 27 0.861916589665 -3.57833320675 9.51832954861 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;111259541;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A111259542-111259622%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A111259542-111259622&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.691471320998 0.88905078804 1.04709840887 111580745 111580825 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;111580744;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A111259542-111259622%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A111580745-111580825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QQDDFSGAAELELEVELRGAGPPAAGQRLLQAEAPAENEPEPEVVVVSWQSGGTGSK Same 573601 chr6:111259542-111259622+ 877 877 50 0 603 111259542 111259622 Best 927 927 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:111259542-111259622&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.765432098765 0.710526315789 4.63301481481 0.8846 -7.20426296296 11.8372777778 0.637591338717 1.08108318735 2364 Best 2364 2364 5.30085555556 0.4353 -6.9593037037 12.2601592593 0.477209934878 0.920435244284 3629 Best 3629 3629 0.0 0.0 ENST00000368847.4 UTR5 pseudo-exon MFSD4B PhyloCSF signal found upstream of ATG. Clearly genuine, as coding continues upstream in non-mammals. 928 570123 chr5:177631373-177631477- NoOverlap chr5 177631373 177631477 - 10.1543514899 35 0.51970702678 3.68711431516 6.46723717472 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;177631372;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177631373-177631477-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A177631373-177631477&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.815557205796 0.887667013914 1.02760612808 177058374 177058478 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;177058373;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177631373-177631477-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A177058374-177058478&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPQGGLYNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTR Same 571141 chr5:177631373-177631477- 959 959 -31 0 413 177631373 177632741 581 581;682;928;2345;9048;9086 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:177631373-177632741&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.714285714286 10.5042714286 0.6393 3.66294285714 6.84132857143 0.662762625348 0.957707764536 2235 Best 2235 2235;3960;4414;7404;13259;17105 15.2456314286 0.3183 3.31250571429 11.9331257143 0.743865797926 0.911623834422 2652 Best 2652 2652;4964;5610;7150;10642;13371 0.998211916729 chr5:176289654-176290955+ 0.887056248933 chr5:176289654-176290955+ ENST00000499314.6,ENST00000500444.2 NC,NCintron pseudogene extension SUMO interacting motifs containing 1 (SIMC1) pseudogene significantly rebuilt (ENSG00000246596) 929 613521 chr10:97865716-97865787+ Extension chr10 97865716 97865787 + 14.3219750673 24 0.712674525063 5.79429168627 8.52768338099 chr10:97865590-97865787+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;97865715;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A97865716-97865787%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A97865716-97865787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.914016589087 0.886919396108 1.0146773479 99625473 99625544 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;99625472;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A97865716-97865787%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A99625473-99625544&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAESPCREVYGRSEGLADLRRLRYQSTRF Same 614235 chr10:97865716-97865787+ 903 903 26 0 604 97865716 97875906 Best 929 929;21114 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:97865716-97875906&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.642857142857 17.1454291667 0.9904 6.59032916667 10.5551 1.00913344888 1.02143531381 660 Best 660 660;8189 22.5691333333 0.7159 1.80300416667 20.7661291667 1.02413500881 1.03101721414 718 Best 718 718;12909 0.0 0.056180480985 chr11:65863410-65863502+ ENST00000370602.5,ENST00000370597.7 UTR3,AntiCDSintron not annotated GOLGA7B suspected STOP-codon readthrough event 930 637716 chr14:23352215-23352454- Extension chr14 23352215 23352454 - 6.66932501644 80 0.572888532845 2.35563371833 4.3136912981 chr14:23351945-23352454- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23352214;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352215-23352454-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23352215-23352454&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.903550761219 0.886486825314 0.97683645235 23821424 23821663 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23821423;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352215-23352454-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23821424-23821663&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FTLLLPPPAPQQQVGTLGDAVPTEQLQGEREREREGEGDAGGDGLGSSLSLAVPPGPLSFEALLAQVGALGGGQQLQLGLCCLPVLFVALGMASDPIFTLAPPLHCHYGAFPPNASGWEQPPNASGVSVASAALAASAASR Same 638367 chr14:23352215-23352454- 865 865 65 0 605 23352215 23352971 Best 930 930;2839;33934;60530;60698;63662 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23352215-23352971&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.754166666667 0.689310689311 7.52165125 0.917 1.799235 5.72241625 0.88636553523 0.965542178599 1342 Best 1342 1342;1960;18367;45222;70218;73449 2.748615 0.4965 -5.0127175 7.7613325 0.461815161188 0.831840372198 3678 Best 3678 3678;4381;6108;16098;43094;60471 0.0 0.125536220342 chr11:68750190-68750660- ENST00000206544.8,ENST00000397260.7,ENST00000557699.5 Extension5p,UTR5,NC under investigation SLC22A17 potential non-ATG start 931 627722 chr12:103699066-103699095+ Extension chr12 103699066 103699095 + 2.9224599719 10 0.826070038911 -14.3372099638 17.2596699357 chr12:103699066-103699230+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;103699065;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A103699066-103699095%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A103699066-103699095&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.410940756692 0.886470040775 0.907428281622 104092844 104092873 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;104092843;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A103699066-103699095%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A104092844-104092873&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLD*LPILCVIQEEDVLR Same 628393 chr12:103699066-103699095+ 661 661 270 2 606 103699066 103699095 Best 931 931 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:103699066-103699095&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.0 -9.27945 0.9669 -22.09382 12.81437 0.030311622879 1.00477169962 28573 Best 28573 28573 -14.28144 0.59 -32.66349 18.38205 0.0083365690742 0.879427595854 31441 Best 31441 31441 0.0 0.0 ENST00000388887.6 ExtensionMid not annotated potentially spurious 932 607523 chr1:46718088-46718183- Extension chr1 46718088 46718183 - 8.19581245817 32 0.989046883345 2.7111125486 5.48469990958 chr1:46717896-46718183- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;46718087;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46718088-46718183-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A46718088-46718183&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.968721784732 0.88621056437 0.967252134511 47183760 47183855 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;47183759;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46718088-46718183-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A47183760-47183855&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PGGSGPGFPTLEGSSKAGRELGIGYEPGSSGVGAPLTPHKK Same 608241 chr1:46718088-46718183- 964 964 -32 0 607 46718088 46718183 Best 932 932 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:46718088-46718183&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.59375 0.354679802956 12.667028125 0.9992 2.753565625 9.9134625 1.03807368794 1.04642551481 383 Best 383 383 15.674446875 0.6601 1.697171875 13.977275 0.902641749998 0.955179212057 2091 Best 2091 2091 0.0 0.0339787012365 chr12:19439700-19440370+ ENST00000371933.7 Extension5p under investigation EFCAB14 potential non-ATG start 933 489528 chr11:114160174-114160233- NoOverlap chr11 114160174 114160233 - 3.4482249938 20 0.847932402533 -9.57616509795 13.0243900917 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;114160173;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114160174-114160233-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A114160174-114160233&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0308773631563 0.886120515107 0.956280643572 114030896 114030955 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;114030895;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114160174-114160233-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A114030896-114030955&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QTWLSTHCTYCTHKSGSQPGLAWSQDYNNK Same 491513 chr11:114160174-114160233- 830 830 103 0 608 114160174 114164042 Best 933 933;13272;22012;22975;35216;64783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:114160174-114164042&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.194805194805 -2.286585 0.9763 -16.59822 14.311635 0.326149168741 1.08298894544 5084 Best 5084 5084;14121;38000;47790;65893;71735 -5.5435 0.6777 -24.040105 18.496605 0.285512248282 1.04082451697 4785 Best 4785 4785;23552;42025;54566;64496;66305 0.0 0.0 ENST00000335953.8,ENST00000539918.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 934 572750 chr6:129292806-129293015+ NoOverlap chr6 129292806 129293015 + 4.37384574387 70 0.976263937482 -7.32489571912 11.698741463 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;129292805;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A129292806-129293015%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A129292806-129293015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.714130822406 0.886002496685 0.922562584262 129613951 129614160 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;129613950;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A129292806-129293015%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A129613951-129614160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IISLLCFVFILFYGWFLKPNMWRDPEKRFCVLCDCDPVGSVSPQCDITGRCVCKSGFVGKQCNLGRQVHQQEEQPRRAQRVLGSPQRWAIGSSSGCPR Same 573777 chr6:129292806-129293015+ 925 925 9 0 609 129292806 129293015 Best 934 934 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:129292806-129293015&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.557142857143 0.70728720147 7.08388 0.9987 -8.41434714286 15.4982271429 0.996195134872 0.950012526473 774 Best 774 774 25.5526757143 0.8922 -7.02286428571 32.57554 1.01644138663 0.986808466885 829 Best 829 829 0.0 0.0746497146186 chr18:7016491-7016671- ENST00000421865.2 CDSintron coding exon(s) LAMA2 cassette exon 935 585589 chr8:143772357-143772485+ NoOverlap chr8 143772357 143772485 + 9.93391407645 43 0.482203899567 4.84785121471 5.08606286174 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143772356;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143772357-143772485%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143772357-143772485&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.848514679774 0.885103119362 0.983134028823 144854527 144854655 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144854526;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143772357-143772485%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144854527-144854655&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AWILLGGPVLQGAFGPTPLYRAAFGGHLAAVEVLLKLGADPRVYAEDGSTPERVWTPEVWAPGGVSPGR Same 586526 chr8:143772357-143772485+ 978 978 -43 0 77 143771490 143772485 87 87;100;935;6043 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143771490-143772485&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.697674418605 0.7095 24.3936395349 0.8227 11.4169209302 12.9767186047 1.0418820468 1.04536493724 342 3 3;85;342;2588 29.7227325581 0.6384 7.19586744186 22.5268651163 1.05031124268 1.04539472923 320 Best 320 320;384;705;2873 0.0 0.144327757321 chr4:124668987-124672534- redundant PhyloCSF signals are accounted for elsewhere on the list 936 552898 chr3:88113116-88113196+ NoOverlap chr3 88113116 88113196 + 7.54135930538 27 0.931961151661 -0.550640741984 8.09200004737 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88113115;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88113116-88113196%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88113116-88113196&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.868971000852 0.884550881051 1.05379977155 88162266 88162346 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88162265;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88113116-88113196%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88162266-88162346&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFFELLLFFGRDEFYEEPLKDILGSFQVK Same 553840 chr3:88113116-88113196+ 913 913 23 0 610 88113116 88113196 Best 936 936 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88113116-88113196&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.382716049383 0.0 8.99493333333 0.9792 0.2947 8.70023333333 0.823790334939 1.01182463763 1583 Best 1583 1583 15.9422444444 0.6156 1.94588148148 13.996362963 0.864357565049 0.93670262726 2255 Best 2255 2255 0.0 0.0 ENST00000473136.4,ENST00000462901.5 NC,AntiUTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 937 467169 chr1:150912315-150912443+ NoOverlap chr1 150912315 150912443 + 6.68230701316 43 0.698356106536 0.76748600117 5.91482101199 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;150912314;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A150912315-150912443%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A150912315-150912443&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.852379811141 0.884528583206 1.02819468514 150884791 150884919 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;150884790;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A150912315-150912443%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A150884791-150884919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LELDNSNEVQVPMEDSSLSSGVDVDKGFAIAFVVLLFLFLIVMIFRCAKLVKNPYK Same 469037 chr1:150912315-150912443+ 907 907 30 0 611 150912315 150912443 Best 937 937 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:150912315-150912443&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.441860465116 0.162878787879 15.910572093 0.9419 1.24237906977 14.6681930233 1.04170879518 0.998203327708 345 Best 345 345 21.7720023256 0.4285 1.86051162791 19.9114906977 1.1382505553 1.04151825376 3 Best 3 3 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283324 938 483222 chr11:1077949-1078041+ NoOverlap chr11 1077949 1078041 + 10.7207353884 31 0.535980527519 3.19115809664 7.52957729178 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1077948;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1077949-1078041%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1077949-1078041&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.806784151751 0.88432413834 1.04660382697 1078093 1078185 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1078092;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1077949-1078041%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1078093-1078185&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGQLTCSLPQQLELDTKFRNHTCGLCGDYNGLQSYSEFLSDGEAR Same 485152 chr11:1077949-1078041+ 961 961 -23 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.569892473118 0.400862068966 25.0012419355 0.9185 8.32196129032 16.6792806452 1.02097039846 1.03180025717 566 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 52.2910516129 0.9333 5.65057096774 46.6404806452 0.977320951281 0.988867828974 1465 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.124600509964 chr11:1162955-1163045+ 0.318541455339 chr11:1162955-1163045+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 939 584196 chr8:54679819-54679932+ NoOverlap chr8 54679819 54679932 + 6.79167888823 38 0.843680154839 1.47243944438 5.31923944385 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;54679818;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54679819-54679932%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A54679819-54679932&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.958780659225 0.884190929898 0.98374005798 55592379 55592492 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;55592378;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54679819-54679932%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A55592379-55592492&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WTAESWKFTKGNTLQFYNKLTGGFVRLHPDGTVDAIGEKTDKYGK Same 585127 chr8:54679819-54679932+ 873 873 66 0 612 54678466 54679932 Best 939 939;1014;3978 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:54678466-54679932&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.421052631579 0.407142857143 11.2664605263 0.9378 2.15030263158 9.11615789474 0.998985787655 1.0437227261 748 Best 748 748;1174;7218 20.0613210526 0.689 -0.0167736842105 20.0780947368 1.06289767697 1.04487918281 205 Best 205 205;338;2796 0.0 0.0 ENST00000521465.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 940 548684 chr22:38506019-38506195+ NoOverlap chr22 38506019 38506195 + 9.43888813687 59 0.835907582053 8.08444923061 1.35443890625 ENST00000396821.7,ENST00000403230.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;38506018;177;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A38506019-38506195%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A38506019-38506195&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01012865455 0.883856024881 0.666270805733 38902024 38902200 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;38902023;177;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A38506019-38506195%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A38902024-38902200&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IEIWERGTDGRAREGLRLRSGDDRWRRRLRCWGGGRRSALSLRRAVSRRRRHRRRLSRRRR Same 550054 chr22:38506019-38506195+ 972 972 -32 0 613 38506019 38506525 Best 940 940;2348;12200;25104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:38506019-38506525&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.757062146893 1.14755197854 0.303227118644 0.8682 -0.174696610169 0.477923728814 0.0802107370665 0.477373580171 18258 5045 5045;8138;18258;30760 -1.65263389831 0.5163 -3.25306101695 1.60042711864 0.120140202876 0.57432462835 9812 5447 5447;9812;16286;35577 0.0 0.0339004522217 chr7:159144298-159144771- ENST00000396821.7,ENST00000216019.11,ENST00000432525.5 AntiCDS,AntiNC,AntiNCintron not annotated putative regulatory region 941 562904 chr4:149553183-149553233- NoOverlap chr4 149553183 149553233 - 9.34101198351 17 0.923099915178 -6.30535887752 15.646370861 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;149553182;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149553183-149553233-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A149553183-149553233&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.645628901197 0.883239474114 0.963804456187 150474335 150474385 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;150474334;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149553183-149553233-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A150474335-150474385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIHRVRYRRGLWRTRQILNLAELEEWMDR Same 563900 chr4:149553183-149553233- 890 890 51 0 141 149548480 149563850 169 169;941;3606;10164 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:149548480-149563850&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.450980392157 1.15909090909 17.7886764706 1.0 -8.79468823529 26.5833647059 0.881947068579 0.984266167282 1356 74 74;1345;1356;2019 22.0475588235 0.4603 -10.0177647059 32.0653235294 0.798468315262 1.03271593759 2480 137 137;2480;3119;3323 0.0 0.0 ENST00000511993.5 NC protein-coding gene protein-coding gene ENSG00000234828 942 521483 chr17:40818394-40818474- NoOverlap chr17 40818394 40818474 - 8.40369642664 27 0.929304951553 1.33473328749 7.06896313915 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;40818393;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A40818394-40818474-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A40818394-40818474&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.927897363416 0.882642336139 1.0281503273 38974646 38974726 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;38974645;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A40818394-40818474-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A38974646-38974726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NFFSIIHTDTNKTRVIKTIIEEVAPDGRVLSSMVESETK Same 522903 chr17:40818394-40818474- 902 902 40 0 614 40818394 40818474 Best 942 942 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:40818394-40818474&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.41975308642 0.852631578947 9.55687407407 0.9932 2.44388888889 7.11298518519 0.817855252502 0.936404338682 1607 Best 1607 1607 14.0407555556 0.5785 -2.17394074074 16.2146962963 0.872371898829 0.994670360589 2224 Best 2224 2224 0.0547766016243 chr17:40861661-40861758- 0.137780659683 chr17:40861661-40861758- ENST00000269576.5 UTR3 coding exon(s) KRT10 alternative reading frame in final exon, M/S supported 943 586809 chr8:60792790-60792825- NoOverlap chr8 60792790 60792825 - 4.76950830718 12 0.99059026983 -10.1278834318 14.897391739 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;60792789;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A60792790-60792825-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A60792790-60792825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.103119261264 0.882609031935 0.947609112586 61705349 61705384 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;61705348;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A60792790-60792825-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A61705349-61705384&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SELAARAFHSDLSIPER Same 587750 chr8:60792790-60792825- 1036 1036 -93 0 615 60792790 60793155 Best 943 943;7038;18295;58454 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:60792790-60793155&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.935064935065 -1.151625 0.9888 -13.66635 12.514725 0.124603350367 1.04834509363 13553 4570 4570;12228;13553;25144 -11.1985416667 0.6418 -23.0672833333 11.8687416667 -0.0110719906886 0.751517840504 41586 6888 6888;10907;32971;41586 0.0 0.0 ENST00000423902.6,ENST00000527900.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 944 581155 chr7:45863094-45863165- NoOverlap chr7 45863094 45863165 - 12.5638084424 24 0.833605452557 -6.55132506415 19.1151335066 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;45863093;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A45863094-45863165-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A45863094-45863165&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.944444263471 0.882454749608 1.03251525623 45902693 45902764 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;45902692;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A45863094-45863165-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A45902693-45902764&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QMERVRQWEIYVLQNIEEATQHELTIEDD Same 582107 chr7:45863094-45863165- 812 812 132 0 616 45863094 45866101 Best 944 944;3949 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:45863094-45866101&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.541666666667 0.757894736842 22.8147541667 0.8315 -1.94214166667 24.7568958333 0.862333040142 0.978320805053 1419 Best 1419 1419;2889 23.9783583333 0.2909 -2.95535416667 26.9337125 0.80508448231 1.05347318315 2454 Best 2454 2454;3757 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283247 945 554881 chr3:13022008-13022103- NoOverlap chr3 13022008 13022103 - 8.11639056355 32 0.68843986038 1.26843441278 6.84795615077 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;13022007;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A13022008-13022103-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A13022008-13022103&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.85987813763 0.882361649551 1.03609029596 13063508 13063603 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;13063507;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A13022008-13022103-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A13063508-13063603&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSTEPGMKGYGSAVWSLMWKYCISVRTLRYRDACMAALPGCR Same 555833 chr3:13022008-13022103- 922 922 23 0 617 13022008 13022103 Best 945 945 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:13022008-13022103&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.533333333333 6.778165625 0.9103 -3.505571875 10.2837375 0.785476655865 1.07138586059 1726 Best 1726 1726 9.489015625 0.373 -3.132496875 12.6215125 0.630565007025 0.939561394598 3063 Best 3063 3063 0.0 0.0 ENST00000613206.1 CDSintron coding exon(s) IQSEC1 alternative first exon 946 581035 chr7:38240099-38240134- NoOverlap chr7 38240099 38240134 - 7.88435854514 12 0.878679331655 -16.553566734 24.4379252791 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;38240098;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38240099-38240134-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A38240099-38240134&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.290584666501 0.882271982454 1.09650890414 38279700 38279735 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;38279699;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38240099-38240134-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A38279700-38279735&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EHVQFLLDTLLLQLTNTSAYYTYLLLLLKSVVYFAIITCCLLR None NA NA 0 578 38240099 38265655 880 880;946;1212;1353;2319;3451;3622;4048;8280;41779;49225 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:38240099-38265655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.553846153846 20.3811833333 0.956 -23.2309 43.6120833333 0.309237837029 0.984596786221 5413 1335 1335;1528;1788;1910;2091;2312;3177;3446;5221;5413;7771 24.341975 0.3706 -24.6374833333 48.9794583333 0.370088261492 0.933197919577 4120 2500 2500;2518;2952;3009;3184;3667;3896;4112;4120;5226;6124 0.0 0.0 ENST00000436911.6 NC immunoglobulin segment overlaps an immunoglobulin region 947 526655 chr19:1524154-1524252+ NoOverlap chr19 1524154 1524252 + 10.7312969565 33 0.467030108825 2.2410818501 8.49021510644 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;1524153;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1524154-1524252%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A1524154-1524252&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.718753806525 0.881816162964 1.05572949335 1524153 1524251 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;1524152;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1524154-1524252%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A1524153-1524251&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMEPRPRRRRRSRPLVAAFLRDPGSGRVYRRGKLIGKVGGPRPESATGPDR Same 528100 chr19:1524154-1524252+ 997 997 -50 0 61 1524154 1533821 68 68;129;412;744;947;2039;3059;9713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:1524154-1533821&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.757575757576 1.07142857143 12.8764393939 0.7363 2.34541818182 10.5310212121 0.918952411312 1.05472215442 1237 205 205;265;523;631;1057;1237;1482;2663 16.269630303 0.4426 -5.59804848485 21.8676787879 1.04187640074 1.05870098826 449 Best 449 449;648;739;1129;1230;1261;1334;1921 0.0 0.0991243040243 chr19:51338888-51339142- ENST00000454744.6 UTR5 pseudo-exon PLK5 pseudo exons 948 485951 chr11:111469225-111469287+ NoOverlap chr11 111469225 111469287 + 12.2713570254 21 0.924803540093 -1.81815704845 14.0895140739 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111469224;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111469225-111469287%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111469225-111469287&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.867491485311 0.881773100045 0.995680247753 111339950 111340012 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111339949;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111469225-111469287%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111339950-111340012&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSLCLGVFSSHSAENTLFIGRECLASVGSFVLLLIRCLAHITAGEPHQDSSPAFLGSFYK Same 487909 chr11:111469225-111469287+ 874 874 74 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.205882352941 16.6500238095 0.96 -1.50662380952 18.156647619 0.962255026745 0.996637479374 1020 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 28.4888 0.5865 -2.90412857143 31.3929285714 1.01191965843 1.04237381563 910 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000356018.6 AntiCDSintron pseudogene unitary pseudogene ENSG00000255093 949 474111 chr1:150365249-150365278- NoOverlap chr1 150365249 150365278 - 5.51679992229 10 0.828793774319 -15.6383700013 21.1551699236 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;150365248;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A150365249-150365278-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A150365249-150365278&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0680575418398 0.881461494948 1.01291665621 150337725 150337754 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;150337724;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A150365249-150365278-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A150337725-150337754&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLTRQGL*EINRR Same 475992 chr1:150365249-150365278- 744 744 205 5 451 150364575 150365278 648 648;949;21763 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:150364575-150365278&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 1.22448979592 7.21029 0.8681 -17.7726 24.98289 0.307601300709 0.954132334624 5445 3551 3551;5445;12300 7.21029 0.2714 -17.7726 24.98289 0.199166083157 1.06347854618 6267 4759 4759;6267;10462 0.0 0.0 ENST00000369067.7,ENST00000492220.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 950 532537 chr2:19504683-19504721+ NoOverlap chr2 19504683 19504721 + 7.09328477429 13 0.968267103309 -8.38617680623 15.4794615805 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;19504682;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A19504683-19504721%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A19504683-19504721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.261516560812 0.881124933776 0.9565238783 19704444 19704482 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;19704443;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A19504683-19504721%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A19704444-19704482&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ENSLPSHNAETPTAFTKTDDLVTDTQAES Same 533915 chr2:19504683-19504721+ 970 970 -20 0 618 19504683 19504721 Best 950 950 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:19504683-19504721&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.487179487179 0.0 6.21021538462 0.9996 -8.50900769231 14.7192230769 0.505822425441 1.04257768965 3105 Best 3105 3105 5.29966923077 0.3779 -10.6494307692 15.9491 0.248474971288 0.943907292594 5228 Best 5228 5228 0.0 0.0 not annotated putative regulatory region 951 507661 chr15:86079973-86080035+ NoOverlap chr15 86079973 86080035 + 10.1285428486 21 0.892331614877 -2.11930004756 12.2478428961 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;86079972;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A86079973-86080035%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A86079973-86080035&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.835837865577 0.880644539953 1.01162979418 86623204 86623266 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;86623203;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A86079973-86080035%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A86623204-86623266&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MAEQEASGLQVLLHTLQVGKGR Same 509392 chr15:86079973-86080035+ 889 889 62 0 619 86079973 86080035 Best 951 951 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:86079973-86080035&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.428571428571 17.0063333333 0.9596 0.249614285714 16.7567190476 0.961935175741 1.01700935719 1023 Best 1023 1023 18.0948714286 0.5311 -2.57934285714 20.6742142857 0.904982793201 1.03327152454 2079 Best 2079 2079 0.0 0.0 coding exon(s) AGBL1 alternative 5' exons 952 517001 chr17:32222769-32222885+ NoOverlap chr17 32222769 32222885 + 6.02352817643 39 0.929765069751 -0.136715389215 6.16024356565 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;32222768;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A32222769-32222885%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A32222769-32222885&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.890107506536 0.880339079028 1.03185058779 30549788 30549904 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;30549787;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A32222769-32222885%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A30549788-30549904&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARIAEWGAMLLADDEGSITHQVHAVSSVEDSIFMESSHGPLFLEAR Same 518396 chr17:32222769-32222885+ 927 927 25 0 620 32222769 32224838 Best 952 952;57239 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:32222769-32224838&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.512820512821 0.264705882353 5.75865128205 1.0 -0.454653846154 6.21330512821 0.726019952121 0.955438317585 1984 Best 1984 1984;49156 9.62851794872 0.754 -2.29867435897 11.9271923077 0.71829120639 0.938384159093 2749 Best 2749 2749;68291 0.0 0.0130436453889 chr16:673934-674102+ ENST00000333942.10,ENST00000578205.5 CDSintron,NCintron coding exon(s) RHOT1 cassette exon. 953 562333 chr4:106367184-106367411- NoOverlap chr4 106367184 106367411 - 9.79928683529 76 0.933720631402 -1.6368777297 11.436164565 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;106367183;228;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A106367184-106367411-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A106367184-106367411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.979061901063 0.879251235467 0.964719252019 107288341 107288568 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;107288340;228;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A106367184-106367411-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A107288341-107288568&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MIINLALFGMTQSGKSSAGNILLGSTDFHSSFAPCSVTTCCSLGRSCHLHSFMRRGGLEVALQVQVLDTPGYPHSRLSK Same 563328 chr4:106367184-106367411- 885 885 68 0 260 106358309 106367411 338 338;447;953 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:106358309-106367411&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.543859649123 0.177939646202 13.5866486842 0.9995 -2.24371184211 15.8303605263 0.937430875347 0.972938149077 1158 180 180;1158;1221 26.6153223684 0.68 0.769982894737 25.8453394737 0.926405508381 1.04210170082 1966 157 157;803;1966 0.0 0.0 ENST00000507153.1 NC protein-coding gene protein-coding gene ENSG00000250298 954 536492 chr2:202202478-202202543+ NoOverlap chr2 202202478 202202543 + 10.4619091207 22 0.998654431705 -0.365854542364 10.8277636631 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;202202477;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A202202478-202202543%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A202202478-202202543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.837011397645 0.878756925064 1.0389077232 203067201 203067266 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;203067200;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A202202478-202202543%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A203067201-203067266&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFHFYQELHKEASGLQWTQNISRPWVYSYFQFLQIPRP Same 537858 chr2:202202478-202202543+ 915 915 39 0 621 202202478 202202543 Best 954 954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:202202478-202202543&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.484848484848 0.0 13.6557772727 1.0 3.20637727273 10.4494 0.947007300762 1.02498210207 1108 Best 1108 1108 20.2276590909 0.5294 -1.39795909091 21.6256181818 0.957879852096 1.04025435559 1729 Best 1729 1729 0.0 0.0 coding exon(s) KIAA2012 extended to full length at 5' and 3' ends 955 494111 chr12:3337119-3337208- NoOverlap chr12 3337119 3337208 - 9.14070662285 30 0.675911090766 2.40936323404 6.73134338881 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3337118;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3337119-3337208-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3337119-3337208&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.885088565649 0.878703030446 1.02396372064 3446285 3446374 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3446284;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3337119-3337208-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3446285-3446374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPSPACVPSLDSAAMAHYKTKQDDWLIVYLKYLLLVFNFCFWMSEFCTHIPFPEH Same 496106 chr12:3337119-3337208- 938 938 17 0 622 3337119 3337208 Best 955 955 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3337119-3337208&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.477777777778 0.0 14.2232533333 0.9579 0.570596666667 13.6526566667 1.03238781517 1.04329536437 455 Best 455 455 16.4233 0.3387 1.89186666667 14.5314333333 0.796451489375 0.959708385999 2492 Best 2492 2492 0.819614552398 chr12:30953992-30954075+ 0.837724565392 chr12:30953992-30954075+ redundant PhyloCSF signals are accounted for elsewhere on the list 956 548398 chr22:29825799-29825825+ NoOverlap chr22 29825799 29825825 + 6.51114447912 9 0.905809448725 -12.2208997011 18.7320441802 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;29825798;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A29825799-29825825%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A29825799-29825825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0223528730357 0.878633881238 0.960686988636 30221788 30221814 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;30221787;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A29825799-29825825%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A30221788-30221814&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IQKPRVNVAEVSQR Same 549765 chr22:29825799-29825825+ 923 923 33 0 623 29825619 29825825 Best 956 956;67356 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:29825619-29825825&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 1.35 1.11423333333 0.9821 -15.571 16.6852333333 0.159718478424 1.02893805162 10912 Best 10912 10912;39127 -12.1103888889 0.5711 -27.6751222222 15.5647333333 -0.0155194895858 0.83118367375 44702 Best 44702 44702;47474 0.0 0.0 ENST00000477074.1,ENST00000307790.7,ENST00000412689.5 AntiNC,AntiCDSintron,AntiNCintron not annotated potentially spurious 957 562901 chr4:149433469-149433516- NoOverlap chr4 149433469 149433516 - 8.00678740442 16 0.859361409934 -9.06923755258 17.076024957 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;149433468;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149433469-149433516-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A149433469-149433516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.513911332213 0.878266795668 0.96227231563 150354621 150354668 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;150354620;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149433469-149433516-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A150354621-150354668&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AIEMLFTLYPPEGAHVPDSTLLK Same 563897 chr4:149433469-149433516- 861 861 96 0 624 149433391 149433516 Best 957 957;1299 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:149433391-149433516&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.395833333333 0.0 19.90025625 0.9991 -8.79748125 28.6977375 0.821634426227 0.990119108976 1595 652 652;1595 23.12498125 0.5282 -12.79593125 35.9209125 0.857649622809 1.00299680283 2287 1795 1795;2287 0.0 0.0 ENST00000506683.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 958 492395 chr12:69353147-69353173+ NoOverlap chr12 69353147 69353173 + 7.94588883718 9 0.92880140383 -12.8473887609 20.7932775981 ENST00000261267.6,ENST00000549690.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;69353146;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A69353147-69353173%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A69353147-69353173&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.103823399424 0.878178238732 0.993679854459 69746927 69746953 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;69746926;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A69353147-69353173%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A69746927-69746953&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YVLTFHHLLHLFLQGGMEKSLSK Same 494377 chr12:69353147-69353173+ 1031 1031 -73 0 625 69353147 69360016 Best 958 958;26782;65226 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:69353147-69360016&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.675 3.27486666667 0.9642 -17.2806333333 20.5555 0.241891051391 0.963768694416 7219 Best 7219 7219;9208;65690 1.61685555556 0.7036 -29.6343111111 31.2511666667 0.424259437039 1.04464897926 3841 Best 3841 3841;11806;70149 0.0 0.0 ENST00000261267.6 CDS not annotated putative regulatory region 959 477005 chr10:24367131-24367199+ NoOverlap chr10 24367131 24367199 + 11.7184695161 23 0.96392236475 2.99820887524 8.72026064085 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;24367130;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24367131-24367199%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A24367131-24367199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.906125938421 0.878074606849 1.03932287441 24656060 24656128 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;24656059;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24367131-24367199%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A24656060-24656128&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GMLISLQAELDIQRYLMKIESSQR Different 612932 chr10:24367170-24367199+ 4637 4637 -3678 0 626 24367131 24367199 Best 959 959 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:24367131-24367199&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.405797101449 0.704081632653 11.551873913 0.9879 1.58536086957 9.96651304348 0.886798730805 1.02513936555 1341 Best 1341 1341 15.4589086957 0.8577 -0.584373913043 16.0432826087 0.782263143067 0.970589227814 2540 Best 2540 2540 0.0 0.0 ENST00000376452.7,ENST00000438429.5 CDSintron,UTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 960 505780 chr14:105588231-105588338- NoOverlap chr14 105588231 105588338 - 2.44766671211 36 0.59272017497 -9.08240554399 11.5300722561 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105588230;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105588231-105588338-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105588231-105588338&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00210965976662 0.877648220421 0.967661655799 106054568 106054675 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106054567;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105588231-105588338-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106054568-106054675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFPLSLDSTPQDGNVVVACLVQGFFPQEPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGK None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62037037037 0.675 10.0003388889 0.9029 -13.9703083333 23.9706472222 1.07818407647 0.985928417385 58 Best 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 10.3570861111 0.4863 -15.78685 26.1439361111 1.03683582193 1.04418054207 525 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0455901317515 chr7:127721287-127721400+ ENST00000390539.2 NC immunoglobulin segment overlaps an immunoglobulin region 961 498821 chr13:98396274-98396342+ NoOverlap chr13 98396274 98396342 + 14.8387302471 23 0.824380599812 8.20275220664 6.63597804049 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;98396273;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98396274-98396342%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A98396274-98396342&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.925130556335 0.877622235821 0.912741626979 99048528 99048596 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;99048527;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98396274-98396342%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A99048528-99048596&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GMAGQLAPLQVTEGSTSSGTESSESDSEMLIPGSQPLIFGNPAVLR Same 500838 chr13:98396274-98396342+ 906 906 55 0 183 98395479 98396402 221 221;647;961;993;1497;3791;4580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:98395479-98396402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.608695652174 0.156818181818 22.4030913043 0.9958 13.1848782609 9.21821304348 1.00730221093 0.931598507383 673 101 101;518;673;881;952;1128;1340 48.8890869565 0.9273 26.9489130435 21.940173913 1.01429152544 0.97286454324 865 855 855;856;865;1168;1169;1303;3287 0.0 0.101295357885 chr2:241441304-241442533+ ENST00000319562.10 CDSintron coding exon(s) FARP1 alternative final exon 962 530516 chr19:28683074-28683247- NoOverlap chr19 28683074 28683247 - 7.40448961278 58 0.54526641463 2.58693791284 4.81755169995 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28683073;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28683074-28683247-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28683074-28683247&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.858028970592 0.877023402479 0.997348644401 29173981 29174154 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29173980;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28683074-28683247-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29173981-29174154&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EIVNELVSAFTQKGQMKKKRLSELGIMQADDNLMSQVMFVGIMGIQFKWNEKQCFGTFLF Same 531980 chr19:28683074-28683247- 973 973 -11 0 627 28683074 28687844 Best 962 962;19139;33342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28683074-28687844&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.396551724138 0.0 6.86487586207 0.7159 2.37266724138 4.49220862069 0.606575091713 0.887849513517 2512 Best 2512 2512;3937;6495 16.2794224138 0.6221 1.32222586207 14.9571965517 0.999978331171 1.00226435474 1113 Best 1113 1113;2292;9825 0.837888549568 chr16:46581729-46582054- 0.974509810945 chr16:46581729-46582054- ENST00000592347.5 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 963 578351 chr7:73735924-73735983+ NoOverlap chr7 73735924 73735983 + 4.24547512233 20 0.714225986114 -11.3101050198 15.5555801421 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;73735923;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A73735924-73735983%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A73735924-73735983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.129191640605 0.876455255045 0.915733516449 73150254 73150313 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;73150253;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A73735924-73735983%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A73150254-73150313&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGTGSALNLLSCPQEDVQQLVWQQVQNQLQREAK Same 579392 chr7:73735924-73735983+ 688 688 275 0 117 73735456 73743100 140 140;963;2258;15809 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:73735456-73743100&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.616666666667 0.186335403727 9.034825 0.9976 -18.109065 27.14389 0.797335804796 1.03456274393 1678 284 284;1112;1678;4016 11.25493 0.5641 -28.096005 39.350935 0.831962280739 0.840990597147 2383 136 136;2383;2522;8559 0.0 0.0 ENST00000427153.1 NC pseudogene unitary pseudogene ENSG00000225969 964 510855 chr16:20725362-20725445+ NoOverlap chr16 20725362 20725445 + 12.498182169 28 0.586538272897 5.70247863526 6.79570353377 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20725361;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20725362-20725445%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20725362-20725445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.884418787304 0.876215729203 1.00053118685 20736684 20736767 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20736683;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20725362-20725445%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20736684-20736767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PLLTSVSFSIIQTLTTYPITTLCSPPTMYWMLLQKDLKRYLGR Same 512493 chr16:20725362-20725445+ 945 945 19 0 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.47619047619 0.0 23.6136071429 0.9683 12.1359035714 11.4777035714 1.02869218002 1.02684486145 495 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 45.8840321429 0.749 22.1891357143 23.6948964286 0.985350193818 1.02686776992 1341 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.827184618783 chr12:7320725-7320804+ 0.878564950607 chr12:7320725-7320804+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 965 482675 chr10:124988918-124988947- NoOverlap chr10 124988918 124988947 - 6.13643997908 10 0.869118791485 -12.833380127 18.969820106 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;124988917;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A124988918-124988947-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A124988918-124988947&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00259642409237 0.876169955102 0.967054026926 126677487 126677516 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;126677486;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A124988918-124988947-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A126677487-126677516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAPLTSELHTERASRL*VQ Same 484603 chr10:124988918-124988947- 860 860 105 2 628 124988918 124988947 Best 965 965 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:124988918-124988947&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 1.09090909091 -0.81798 0.9385 -17.70897 16.89099 0.130155856565 1.03642218009 13077 Best 13077 13077 -7.32455 0.4785 -30.21042 22.88587 0.115124912919 1.03848390878 10221 Best 10221 10221 0.0 0.0 ENST00000337195.9 UTR3 not annotated potentially spurious 966 582917 chr7:143647001-143647084- NoOverlap chr7 143647001 143647084 - 6.39993561166 28 0.670569161517 -4.11903916246 10.5189747741 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143647000;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143647001-143647084-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143647001-143647084&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.573339983739 0.87568159063 1.01835706642 143344094 143344177 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143344093;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143647001-143647084-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143344094-143344177&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLQEFVAEGGGLLIGGQAWWWASQNPGHCPLAGFPGNIILNCFGLSILPQTLKAGCFPVPTPEMRSYHFRKALSQFQAILNHENGNLEK Same 583846 chr7:143647001-143647084- 967 967 -1 0 72 143639739 143647639 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.571428571429 0.4921875 17.504625 0.9533 -5.98568571429 23.4903107143 1.03322433835 0.972658931366 444 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 30.4086857143 0.8138 -10.08095 40.4896357143 1.04420518679 0.950269434219 415 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.955437940237 chr7:143719683-143720674+ 0.825840884265 chr7:143719683-143720674+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 967 502292 chr14:79417471-79417497+ NoOverlap chr14 79417471 79417497 + 7.62144433128 9 0.895701194442 -17.0794330968 24.7008774281 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;79417470;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A79417471-79417497%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A79417471-79417497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0804478526039 0.875521610325 1.0559809998 79883814 79883840 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;79883813;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A79417471-79417497%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A79883814-79883840&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MLENLAQLLLIFLLLLLLLL*LPPELLLLLPWLLDASLTIYLFSSGTHL Same 504193 chr14:79417471-79417497+ 1167 1167 -200 1 629 79417471 79417497 Best 967 967 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:79417471-79417497&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.0 -17.4076 0.9018 -21.185 3.7774 0.0253028035264 0.608494585162 30510 Best 30510 30510 -24.2829666667 0.3999 -28.9067777778 4.62381111111 0.075548684774 0.303041321056 14390 Best 14390 14390 0.0 0.0 ENST00000281127.11,ENST00000553803.5 CDSintron,NCintron not annotated potentially spurious 968 480272 chr10:23250457-23250516- NoOverlap chr10 23250457 23250516 - 6.3816299364 20 0.842404821851 -6.29519503936 12.6768249758 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;23250456;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23250457-23250516-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A23250457-23250516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.522020551357 0.87495841147 0.981450107863 23539386 23539445 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;23539385;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23250457-23250516-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A23539386-23539445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FRKEADRLNKSWEKRFFILRNR Same 482182 chr10:23250457-23250516- 896 896 72 0 284 23239726 23250664 372 372;968;2084 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:23239726-23250664&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.383333333333 0.5 7.791955 1.0 -8.39296 16.184915 0.808492733405 1.01405759216 1637 276 276;1637;4085 10.33746 0.5799 -12.09062 22.42808 0.783588568902 1.06799591724 2535 534 534;2535;3694 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 969 552901 chr3:88129687-88129836+ NoOverlap chr3 88129687 88129836 + 5.34542794764 50 0.884614938582 -0.54639598608 5.89182393372 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88129686;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88129687-88129836%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88129687-88129836&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.845825723933 0.874835919807 1.04110145734 88178837 88178986 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88178836;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88129687-88129836%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88178837-88178986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LYELISLFLLQHLLKTDCKSGIDIICNAEKEGKTMLALQLCESFLIPQLQNGDMYCIW*VFVNK Same 553843 chr3:88129687-88129836+ 897 897 72 2 293 88126134 88139310 388 388;882;969;1723;6190;10019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88126134-88139310&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.36 0.0 9.449546 0.9592 1.164238 8.285308 0.992430300731 1.04439628247 810 384 384;810;1269;2625;2709;3294 20.027106 0.8993 -1.993892 22.020998 1.02917505834 1.04561298662 635 476 476;635;1080;1140;2139;2319 0.0 0.117110877609 chr6:87243475-87243611+ ENST00000473136.4,ENST00000462901.5 NC,AntiUTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 970 528165 chr19:35767600-35767674+ NoOverlap chr19 35767600 35767674 + 11.0172639084 25 0.716792553597 3.1673560214 7.84990788698 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35767599;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35767600-35767674%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35767600-35767674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.899246078841 0.874689493184 1.03364237961 36258501 36258575 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36258500;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35767600-35767674%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36258501-36258575&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APRPEAAEQVPAAGQGPGPQLRGVLGQVVAARLFPDSLEDTPPHFEGPPPPK Same 529614 chr19:35767600-35767674+ 948 948 22 0 630 35767600 35790402 Best 970 970;24953;37997;48990;61514;64238;71528 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35767600-35790402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.693333333333 0.111607142857 21.902244 0.9731 1.837856 20.064388 1.03383394779 0.988794119409 432 Best 432 432;4773;28957;32900;57014;70882;72541 17.779952 0.6239 -9.414108 27.19406 1.02942643789 1.04751789021 633 Best 633 633;9309;48569;62013;62367;64507;71253 0.0 0.146648525522 chr16:67541867-67543264+ ENST00000620918.4,ENST00000396908.8 NC,CDSintron coding exon(s) PROSER3 retained intron CDS 971 522928 chr17:67996127-67996207- NoOverlap chr17 67996127 67996207 - 11.0772334128 27 0.66002447095 4.19541485221 6.88181856054 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;67996126;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A67996127-67996207-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A67996127-67996207&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.900639244872 0.874313650565 1.0086212166 65992243 65992323 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;65992242;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A67996127-67996207-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A65992243-65992323&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLGTLSAKMTARAFWLLCLIVGSSPEAPVAER Same 524363 chr17:67996127-67996207- 953 953 18 0 538 67993147 67996207 816 816;971;14397;15782;34535 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:67993147-67996207&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.543209876543 0.836776859504 18.0971 0.9262 2.85737407407 15.2397259259 0.999772135754 1.03264824185 740 535 535;740;4772;6794;48625 18.3636777778 0.4501 -0.622662962963 18.9863407407 0.954715054752 1.02694080552 1766 946 946;1766;4259;11308;63387 0.0 0.0 ENST00000580729.1 NC coding exon(s) C17orf58 alternative 5' extension 972 485928 chr11:111453424-111453489+ NoOverlap chr11 111453424 111453489 + 6.74409993806 22 0.735949561997 -7.15004990318 13.8941498412 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111453423;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111453424-111453489%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111453424-111453489&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.546895993694 0.874292565045 0.947200393196 111324149 111324214 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111324148;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111453424-111453489%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111324149-111324214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MQCHSLSWARKAAPHPTFRRHQQECNLDAYTSPR Same 487886 chr11:111453424-111453489+ 878 878 94 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606060606061 0.171875 7.05657272727 0.9629 -12.6716 19.7281727273 0.828892400472 0.940528453794 1565 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 7.64372272727 0.3442 -14.8013045455 22.4450272727 0.619168432644 1.07997871633 3097 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000528953.1,ENST00000525890.1 NC,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 973 581611 chr7:81560120-81560206- NoOverlap chr7 81560120 81560206 - 6.26862073356 29 0.92997529617 -2.04887232647 8.31749306003 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;81560119;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81560120-81560206-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A81560120-81560206&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.782537811454 0.874245925456 1.05796365205 81189436 81189522 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;81189435;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81560120-81560206-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A81189436-81189522&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IAVKVTDLDNDAIPDPLRQRSGTAQVTISVLVR Same 582570 chr7:81560120-81560206- 969 969 4 0 592 81560120 81607572 904 904;925;973;1260;1465;2153;3581;4237;4691;5577 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:81560120-81607572&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.505747126437 0.180124223602 7.8883137931 0.965 -6.92931034483 14.8176241379 0.938264284801 1.02189462674 1152 Best 1152 1152;1609;1628;2206;2439;2771;3071;3088;3130;3532 5.95396551724 0.5869 -14.1496586207 20.1036241379 0.786912027887 1.08318447173 2526 Best 2526 2526;2821;2931;3052;3114;3116;3529;3585;4138;5392 0.0 0.0 ENST00000412900.2 NC pseudogene unitary pseudogene ENSG00000233491 974 581233 chr7:57173053-57173256- NoOverlap chr7 57173053 57173256 - 6.20213971725 68 0.380360292435 -1.01547655113 7.21761626838 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57173052;204;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57173053-57173256-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57173053-57173256&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.549003793698 0.87393795408 1.05461541285 57240760 57240963 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57240759;204;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57173053-57173256-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57240760-57240963&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSFVTGFVGFFSKPSIYGGLGLILSGAVGCVIVLNYGGAFMGLIVFFVYLGGMMVVFGYTVVMAIEEYPEA Same 582187 chr7:57173053-57173256- 1006 1006 -32 0 631 57173053 57173256 Best 974 974 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57173053-57173256&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.387254901961 0.202380952381 9.59423970588 0.4365 -0.414107352941 10.0083470588 0.907725769791 1.05874992815 1274 Best 1274 1274 21.2899602941 0.7651 3.46444117647 17.8255191176 1.0206117425 1.0266229173 777 Best 777 777 0.651684996046 chrM:14149-14673- 0.889290418746 chrM:14149-14673- pseudogene mitochondrially encoded NADH dehydrogenase 6 (MT-ND6) pseudogene (ENSG00000283311) 975 508955 chr15:58538488-58538523- NoOverlap chr15 58538488 58538523 - 6.49842496216 12 0.891054398413 -10.4428666706 16.9412916328 ENST00000299022.9,ENST00000356113.10,ENST00000414170.7,ENST00000433326.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;58538487;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A58538488-58538523-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A58538488-58538523&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.160537002179 0.873790502466 0.949798868974 58830687 58830722 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;58830686;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A58538488-58538523-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A58830687-58830722&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HVSISYRPPVDYHHQR Same 510679 chr15:58538488-58538523- 895 895 80 0 632 58538488 58538523 Best 975 975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:58538488-58538523&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.791208791209 0.910683333333 0.9948 -22.6001083333 23.5107916667 0.336986366184 0.938515628403 4896 Best 4896 4896 -2.52213333333 0.8375 -38.20155 35.6794166667 0.380915576986 0.972495926714 4059 Best 4059 4059 0.0 0.0 ENST00000299022.9,ENST00000559845.5 AntiCDS,AntiNCintron not annotated potentially spurious 976 527048 chr19:7556974-7557081+ NoOverlap chr19 7556974 7557081 + 7.88849728968 36 0.677217008723 1.99139170835 5.89710558133 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;7556973;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A7556974-7557081%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A7556974-7557081&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.882540665617 0.873699651329 1.00867530896 7621860 7621967 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;7621859;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A7556974-7557081%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A7621860-7621967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPYPPHAIPAGCVWRYVRASASYCPYLPPLCDPKDGHLLVDGCYVNNVPGQR Same 528494 chr19:7556974-7557081+ 949 949 27 0 633 7556974 7557081 Best 976 976 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:7556974-7557081&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.771428571429 10.7848916667 0.9621 0.564694444444 10.2201972222 1.00764116274 1.05831926869 668 Best 668 668 26.4212944444 0.9869 -2.61091666667 29.0322111111 1.00518096622 1.02558704634 1029 Best 1029 1029 0.0 0.0862571989283 chr19:7557168-7557284+ ENST00000221249.10,ENST00000595352.1 CDSintron,NCintron coding exon(s) PNPLA6 cassette exon 977 476461 chr1:244054702-244054773- NoOverlap chr1 244054702 244054773 - 6.66777081912 24 0.904212761629 -3.32262065013 9.99039146925 ENST00000358704.4,ENST00000622512.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244054701;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244054702-244054773-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244054702-244054773&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.707559267015 0.873152748733 1.04306749201 244218004 244218075 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244218003;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244054702-244054773-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244218004-244218075&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAQDVGDVGEQTALHASLHLDTLALWGHHLIITGFVLPVQLPQDRVLPQGSQMGRLILYPVISAHTFFHSAMFHVIVISANITLITGSLFLHLHLHQVASQHVL Same 478355 chr1:244054702-244054773- 941 941 36 0 634 244048122 244055468 Best 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.333333333333 2.0741375 0.9995 -6.44730416667 8.52144166667 0.401695317291 1.00567231417 3989 Best 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -14.8816083333 0.9219 -20.7897583333 5.90815 -0.0372422710722 0.573742585809 63151 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0 ENST00000358704.4 AntiCDS not annotated putative regulatory region 978 474993 chr1:178490136-178490348- NoOverlap chr1 178490136 178490348 - 4.01395919709 71 0.700138943066 -2.9312013338 6.94516053089 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;178490135;213;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A178490136-178490348-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A178490136-178490348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.572730192826 0.872883578881 1.06871407111 178459271 178459483 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;178459270;213;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A178490136-178490348-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A178459271-178459483&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHHTDLADLQMVTDETGKEALRSIMSETEAWIGLYLNANSGSLSWSSDLGASIPSWLQVPMMVRGLCTALGIYMTYSPK Same 476874 chr1:178490136-178490348- 920 920 58 0 541 178479544 178490348 820 820;978;4383;7753 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:178479544-178490348&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.572769953052 0.289009497965 10.7336394366 0.9542 -4.63891690141 15.372556338 0.973016019017 0.957459668924 945 Best 945 945;1732;2988;3553 12.7195830986 0.3672 -5.72879295775 18.4483760563 0.925783814422 1.0561666686 1971 Best 1971 1971;3265;4680;7353 0.0 0.0 protein-coding gene protein-coding gene ENSG00000188585 979 573709 chr6:9840377-9840436- NoOverlap chr6 9840377 9840436 - 6.56482498646 20 0.891383230335 -5.53233497143 12.0971599579 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;9840376;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9840377-9840436-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A9840377-9840436&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.555791734422 0.872091115535 0.998954521834 9840610 9840669 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;9840609;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9840377-9840436-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A9840610-9840669&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPPFVENEQSQPPQPLQIQIRCLRGLKDKAPPGSYVLKVSK Same 574738 chr6:9840377-9840436- 930 930 49 0 635 9840243 9840436 Best 979 979;2106 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:9840243-9840436&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.0 3.50197 0.9674 -13.341275 16.843245 0.623201481302 1.01142011892 2422 1462 1462;2422 25.833835 0.8205 -11.482605 37.31644 1.03101146064 0.985005861122 610 456 456;610 0.0 0.0 ENST00000469426.5,ENST00000460363.6,ENST00000460066.5 NC,CDSintron,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 980 511628 chr16:52439420-52439641+ NoOverlap chr16 52439420 52439641 + 3.47549052577 74 0.884271660078 -5.60243920438 9.07792973015 ENST00000219746.13,ENST00000407228.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;52439419;222;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A52439420-52439641%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A52439420-52439641&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.581615154965 0.872079194134 1.03284047849 52473332 52473553 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;52473331;222;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A52439420-52439641%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A52473332-52473553&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVLHVLQLLQLEALLQLLLQLLLINLLLEMLLLLLQVLLHVVLEMLLLHLLLDLLMHLVLLELLLLHLLHLLLLLLLLLLQLHLMLLGLHR Same 513269 chr16:52439420-52439641+ 824 824 156 0 636 52439420 52439641 Best 980 980 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:52439420-52439641&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.545045045045 0.0 2.95927567568 0.9288 -8.44684864865 11.4061243243 0.839333467872 1.08071864085 1513 Best 1513 1513 3.66766756757 0.8592 -22.1128810811 25.7805486486 0.953724042645 1.0977312824 1785 Best 1785 1785 0.0 0.0 ENST00000219746.13,ENST00000566696.1 AntiCDS,AntiNC not annotated potentially spurious 981 593112 chr9:122905277-122905327- NoOverlap chr9 122905277 122905327 - 5.57118238421 17 0.875049255225 -8.14359416681 13.714776551 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;122905276;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905277-122905327-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A122905277-122905327&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.296037989675 0.871751700687 0.961403073688 125667556 125667606 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;125667555;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905277-122905327-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A125667556-125667606&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRRRRRRWREEEEAPSRPSPPPTGLSL Same 594065 chr9:122905277-122905327- 901 901 80 0 637 122905081 122905417 Best 981 981;3503;11688;13684;41126;71692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:122905081-122905417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.745098039216 0.940092165899 -2.37525882353 0.8461 -7.78577647059 5.41051764706 -0.00194029852917 0.737661894376 42486 17978 17978;19658;42486;47356;64280;71470 -3.77906470588 0.3176 -8.74798823529 4.96892352941 -0.00194980825654 0.572599047112 36324 17127 17127;21574;24738;33390;36324;59653 0.0 0.0 ENST00000423239.6,ENST00000478216.1 UTR5,NC not annotated putative regulatory region 982 571892 chr6:60544725-60544940+ NoOverlap chr6 60544725 60544940 + 9.19798607338 72 0.925839458135 -3.04116388819 12.2391499616 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;60544724;216;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60544725-60544940%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A60544725-60544940&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.982500433769 0.871137582134 0.947545802059 57512472 57512687 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;57512471;216;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60544725-60544940%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A57512472-57512687&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CNINFLPLQVGDCGFSLNHPNHFFCESQRILNGGKDIKKESIQPETPQPKPSVQKTKDASSALASLNSSLEMDMEGLEDYFSEDS Same 572917 chr6:60544725-60544940+ 917 917 65 0 638 60544725 60544940 Best 982 982 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:60544725-60544940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.402777777778 0.114164904863 10.9678555556 0.9444 -1.62117777778 12.5890333333 0.991393967146 1.01999602916 825 Best 825 825 12.7496583333 0.5951 -6.75797361111 19.5076319444 0.976910874434 1.06318999175 1475 Best 1475 1475 0.979409017855 chr6:57645928-57646158+ 1.00521017763 chr6:57645928-57646158+ redundant PhyloCSF signals are accounted for elsewhere on the list 983 486455 chr11:123591392-123591460+ NoOverlap chr11 123591392 123591460 + 8.59429566238 23 0.750173322586 -3.6341608672 12.2284565296 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;123591391;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A123591392-123591460%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A123591392-123591460&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.762127330713 0.870920593111 0.995221805466 123462100 123462168 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;123462099;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A123591392-123591460%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A123462100-123462168&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WEGQPCWAMESLTESGVLWSLLLEQESQLLQWYLK Same 488417 chr11:123591392-123591460+ 960 960 23 0 639 123591392 123591550 Best 983 983;28812 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:123591392-123591550&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.623188405797 0.31221719457 14.4823 0.9727 -4.29776956522 18.7800695652 0.989408645138 0.976248331951 838 Best 838 838;6766 19.2395173913 0.596 -12.6088086957 31.848326087 1.01405129617 1.00637669669 870 Best 870 870;21023 0.0 0.0 ENST00000322282.11,ENST00000532581.5 CDSintron,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 984 485675 chr11:85663503-85663583+ NoOverlap chr11 85663503 85663583 + 8.40830362726 27 0.907850766766 1.78270006069 6.62560356657 ENST00000534224.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;85663502;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663503-85663583%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A85663503-85663583&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.933018053219 0.87084341963 1.00929114312 85374547 85374627 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;85374546;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663503-85663583%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A85374547-85374627&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALREEMDPYQVVRRERLFCNPYNGAWQEGNHLK Same 487634 chr11:85663503-85663583+ 924 924 60 0 640 85662411 85665175 Best 984 984;2049;2813;3027;18118;20011;21291;24329;58708;71875 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:85662411-85665175&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.567901234568 0.642857142857 2.20004444444 0.9652 0.0664111111111 2.13363333333 0.160581326834 0.550609200742 10858 2447 2447;10858;11498;16615;27666;29218;29965;35821;36919;48364 -10.5529555556 0.8373 -8.1406 -2.41235555556 -0.056084029959 0.305650660894 72999 5807 5807;12876;35731;45741;53410;58313;62812;66127;69825;72999 0.0 0.0 ENST00000534224.1,ENST00000527447.1,ENST00000260058.9 AntiCDS,AntiUTR3,AntiNC not annotated putative regulatory region 985 494075 chr12:2855057-2855125- NoOverlap chr12 2855057 2855125 - 9.6115347147 23 0.891890493298 0.636443376541 8.97509133816 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2855056;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2855057-2855125-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2855057-2855125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.882794706538 0.870395564888 1.05208020479 2964223 2964291 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2964222;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2855057-2855125-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2964223-2964291&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPPTEHPIPPPSWMGQNSFLTFIHCYPTFVDMK Same 496069 chr12:2855057-2855125- 916 916 69 0 6 2849327 2855413 6 6;133;515;985;1632;2840;5109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2849327-2855413&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.652173913043 0.174242424242 18.4320608696 0.9859 4.5124173913 13.9196434783 1.01680013414 1.04346181948 599 26 26;270;287;599;1474;2001;2776 21.1134869565 0.4332 1.81626086957 19.297226087 0.897344702449 1.01284902144 2115 189 189;675;1206;2115;2904;3470;3931 0.0 0.0 ENST00000537710.5 AntiNCintron protein-coding gene protein-coding gene ENSG00000283297 986 531193 chr19:40321274-40321357- NoOverlap chr19 40321274 40321357 - 8.95465711398 28 0.814893895301 3.20466780982 5.74998930416 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;40321273;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40321274-40321357-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A40321274-40321357&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.957766401474 0.870147590786 0.961028485588 40827181 40827264 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;40827180;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40321274-40321357-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A40827181-40827264&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PPSLLCASPHCCDFSLSLSSLCSFLFCFLSPWQGPTVRCVLPDPPVPPASQRPPRRRWR Same 532664 chr19:40321274-40321357- 911 911 75 0 641 40321274 40321357 Best 986 986 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:40321274-40321357&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.75 0.884210526316 3.34760357143 0.9687 -1.77836071429 5.12596428571 0.363708842768 0.82274049681 4478 Best 4478 4478 2.38753928571 0.4434 -3.06769642857 5.45523571429 0.201553336098 0.671154146696 6207 Best 6207 6207 0.0 0.0415878562338 chr19:18436330-18436479- ENST00000392035.6,ENST00000582734.1,ENST00000577617.5 UTR3,NC,CDSintron coding exon(s) C19orf47 alternative final exon 987 586086 chr8:22751075-22751104- NoOverlap chr8 22751075 22751104 - 5.67747001648 10 0.925481040665 -10.852789557 16.5302595735 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;22751074;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A22751075-22751104-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A22751075-22751104&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0598811051166 0.870087857419 0.943613803944 22608588 22608617 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;22608587;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A22751075-22751104-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A22608588-22608617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PWSSCSTDSLGQISQPSTESYHKFQTKKVCWSR Same 587025 chr8:22751075-22751104- 958 958 29 0 642 22751075 22761628 Best 987 987;2545;12910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:22751075-22761628&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4 0.0 0.47713 0.9869 -16.63228 17.10941 0.190579098539 1.02719653924 9203 8435 8435;9203;15584 -1.92277 0.5231 -19.56826 17.64549 0.137961276311 0.968335146907 8641 Best 8641 8641;13004;19107 0.0 0.0 ENST00000256404.7,ENST00000521141.1 CDSintron,AntiNCintron not annotated potentially spurious 988 540153 chr2:131379847-131380083- NoOverlap chr2 131379847 131380083 - 6.55851012468 79 0.321293965057 -2.24396459334 8.80247471802 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131379846;237;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131379847-131380083-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131379847-131380083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.571158124146 0.86977206073 1.0205625838 132137420 132137656 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;132137419;237;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131379847-131380083-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A132137420-132137656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VINLTLALVINTLLALSLIAITFWLPQLNIYTEKSSPYE*GFDSLSSTRIPFSIKSFLVAITFLLFDLEITLLLPLP*ALQTT Same 541515 chr2:131379847-131380083- 934 934 54 40 643 131370351 131386316 Best 988 988;1634;5892;16115;21323;24702;26053;30266;32713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131370351-131386316&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.413502109705 0.412173913043 26.0516873418 0.6539 -2.52394303797 28.5756303797 0.807272991854 1.14830671125 1643 1235 1235;1643;1841;2007;2369;2922;4039;4272;46168 65.3439405063 0.8796 3.41190126582 61.9320392405 0.929175088781 0.973906570164 1945 939 939;1359;1734;1945;2052;2301;2444;3194;23136 0.947290031883 chrM:10059-10404+ 0.991206211412 chrM:10059-10404+ pseudogene extension mitochondrial pseudogene region extended (e.g. ENSG00000284003) 989 560225 chr4:146230244-146230318+ NoOverlap chr4 146230244 146230318 + 2.59784402847 25 0.856900282292 -9.24073201776 11.8385760462 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;146230243;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A146230244-146230318%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A146230244-146230318&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0321903964848 0.869216297879 0.980890267559 147151396 147151470 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;147151395;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A146230244-146230318%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A147151396-147151470&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QTNPRPDIGLEGAQAPLGIQLRTPQLGILLCLSATLGMALAAGLR Same 561216 chr4:146230244-146230318+ 919 919 70 0 242 146217013 146230318 309 309;516;989;2305;2338 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:146217013-146230318&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.626666666667 0.138888888889 -2.225256 0.9216 -14.746304 12.521048 0.326263065393 1.09348119802 5079 664 664;700;2226;4904;5079 23.18886 0.8213 -3.096392 26.285252 1.02178731395 1.05408977419 762 442 442;762;1179;1402;2183 0.0 0.0 protein-coding gene protein-coding gene ENSG00000250673 990 510679 chr16:10866284-10866481+ NoOverlap chr16 10866284 10866481 + 10.0899424644 66 0.865545822149 -3.79084246527 13.8807849297 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;10866283;198;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A10866284-10866481%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A10866284-10866481&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.972268467836 0.86879919513 0.976089553877 10960141 10960338 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;10960140;198;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A10866284-10866481%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A10960141-10960338&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAMNNFQAILTQVRMLLSSHQPSLVQALLDNLLKEDLLSREYHCTLLHEPDSEALARKISLTLLEK Same 512316 chr16:10866284-10866481+ 918 918 72 0 644 10866284 10866481 Best 990 990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:10866284-10866481&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.560606060606 0.0 13.2448439394 0.9606 -3.52935909091 16.7742030303 0.954729598167 0.942693668763 1066 Best 1066 1066 17.7076545455 0.5613 -6.88632878788 24.5939833333 1.00575460411 1.03853257143 1019 Best 1019 1019 0.0 0.0 ENST00000572017.1 AntiNCintron coding exon(s) CIITA first coding exon 991 472228 chr1:46533057-46533488- NoOverlap chr1 46533057 46533488 - 6.93936942989 144 0.598223489569 4.00478121731 2.93458821257 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;46533056;432;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46533057-46533488-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A46533057-46533488&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.93214521037 0.868470765069 0.849293656002 46998729 46999160 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;46998728;432;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46533057-46533488-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A46998729-46999160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEGPPVPAPAERARGRVPGLPSPALCCACGLCALLAGVNVTLAGAFASFLPEHNALLVVGLALLVLALGFFAACCVCSRRGLAPRGRSAAAAGPGQGGGRAGPVALEMESSEPTAQDTTAVQLSPAVSAASSGCSSPGPSPLALEAPAPAAVCALR None NA NA 0 645 46533057 46533488 Best 991 991 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:46533057-46533488&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.796296296296 0.964285714286 11.2686506944 0.7951 4.25303125 7.01561944444 1.02643208576 0.975261053124 510 Best 510 510 30.9794069444 0.8502 9.90258263889 21.0768243056 0.999448210886 0.972821220782 1121 Best 1121 1121 0.0 0.0998118232659 chr19:40393966-40397970- protein-coding gene protein-coding gene ENSG00000282881 992 538000 chr2:27136918-27137052- NoOverlap chr2 27136918 27137052 - 5.27541339662 45 0.766564092131 -1.2438221746 6.51923557123 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;27136917;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A27136918-27137052-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A27136918-27137052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.749793598852 0.868124704909 1.05414320868 27359786 27359920 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;27359785;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A27136918-27137052-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A27359786-27359920&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPPGTPPPNPTLPTRPQISGSPRDTLKGWLAGGQVCSPALNPGSPLWSLLSPG Same 539372 chr2:27136918-27137052- 936 936 56 0 646 27136918 27137052 Best 992 992 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:27136918-27137052&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.651851851852 0.2109375 10.3497155556 0.9846 -0.672133333333 11.0218488889 1.04889863671 1.05564336323 271 Best 271 271 10.1001688889 0.3804 -2.02515333333 12.1253222222 0.74078465394 0.952541055553 2662 Best 2662 2662 0.0 0.119884750779 chr9:34723232-34726988- ENST00000335524.7 UTR3 coding exon(s) PRR30 alternative first exon 993 633900 chr13:98395479-98395580+ Extension chr13 98395479 98395580 + 8.32351473982 34 0.69484918252 2.68487064716 5.63864409266 chr13:98395401-98395580+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;98395478;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98395479-98395580%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A98395479-98395580&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.913603983472 0.868121340127 0.986292794627 99047733 99047834 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;99047732;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98395479-98395580%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A99047733-99047834&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQQSKPQPPQPSTGPASRAARGSSTSIPFIDCSDVDSEYDLLREQASR Same 634555 chr13:98395479-98395580+ 963 963 30 0 183 98395479 98396402 221 221;647;961;993;1497;3791;4580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:98395479-98396402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.529411764706 0.85 15.0003470588 0.9956 2.16235294118 12.8379941176 1.06717325704 1.04800235651 101 Best 101 101;518;673;881;952;1128;1340 25.3593294118 0.9862 -4.18254411765 29.5418735294 0.996204823034 1.02177877164 1168 855 855;856;865;1168;1169;1303;3287 0.0 0.0915104537317 chr2:241441304-241442533+ ENST00000319562.10 ExtensionMid coding exon(s) FARP1 alternative final exon 994 548432 chr22:30969363-30969812+ NoOverlap chr22 30969363 30969812 + 7.70166534744 150 0.925557539228 5.51109137605 2.1905739714 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30969362;450;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969363-30969812%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30969363-30969812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.972444427488 0.86761843676 0.776951086694 31365349 31365798 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31365348;450;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969363-30969812%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31365349-31365798&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IEEALARPPPLPGLVGRRNGRAVDRAIGWRLFLLLWHPALGAQARPPRRAPGGRWRSRRVFLLVRRTRAAAYAFAIRRGVVRVVGGGGQLLRPAPGEAAAAAAAGFGAAGEAGVAGAGLEAWRHPSGPARTQLGGQEGAGGWLVVGFLLCLFLLMPP Same 549799 chr22:30969363-30969812+ 939 939 55 0 647 30968833 30969812 Best 994 994;1622;7572;73310 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968833-30969812&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.728888888889 1.0069404938 7.86991666667 0.8124 5.30860333333 2.56131333333 0.82486553205 0.75015068947 1582 Best 1582 1582;6148;22372;52363 6.553644 0.3121 4.36169266667 2.19195133333 0.315743511093 0.643717494136 4480 Best 4480 4480;8146;20994;30822 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 995 480488 chr10:33566078-33566119- NoOverlap chr10 33566078 33566119 - 6.89970699378 14 0.854559722722 -10.2288498894 17.1285568832 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;33566077;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A33566078-33566119-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A33566078-33566119&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.31078873968 0.86761428702 0.954983012739 33855006 33855047 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;33855005;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A33566078-33566119-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A33855006-33855047&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AASILNTPQTTQHAPYR Same 482399 chr10:33566078-33566119- 871 871 124 0 648 33566078 33566119 Best 995 995 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:33566078-33566119&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.47619047619 0.65625 -4.57773571429 0.8915 -14.9831785714 10.4054428571 0.0418251094035 0.993290064349 25066 Best 25066 25066 -9.38735714286 0.3802 -18.4051928571 9.01783571429 -0.000906217346808 0.682314931152 35835 Best 35835 35835 0.0 0.0 not annotated putative regulatory region 996 561225 chr4:17877082-17877282- NoOverlap chr4 17877082 17877282 - 5.42793284646 67 0.905467170898 0.151332837877 5.27660000858 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17877081;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17877082-17877282-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17877082-17877282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.862900211448 0.866994293321 1.02777317787 17878705 17878905 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17878704;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17877082-17877282-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17878705-17878905&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGDFITSLLHNAKASDYSFMELLSQHDKKVENKIIQTRFRKRQETLFAMRNSSDSPMFRRQSLQIKRELASLDENFTR Same 562216 chr4:17877082-17877282- 899 899 97 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.328358208955 0.554227941176 8.80065074627 0.9993 -0.388365671642 9.18901641791 1.00774264225 1.06247306588 667 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 29.4065447761 0.9171 4.76959402985 24.6369507463 1.02432737247 1.03766715572 710 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 997 500646 chr14:21712704-21712793+ NoOverlap chr14 21712704 21712793 + 7.62954668999 30 0.535009791206 -3.87424673239 11.5037934224 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21712703;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21712704-21712793%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21712704-21712793&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.533154778997 0.866195194822 0.982283644817 22180927 22181016 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22180926;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21712704-21712793%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22180927-22181016&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQVFQPSTVASSEGAVVEIFCNHSVSNAYNFFWYLHFPGCAPRLLVKGSKPSQQGRYNMTYERFSSSLLILQVR None NA NA 0 649 21712704 21724311 Best 997 997;2414 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21712704-21724311&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488888888889 0.588235294118 9.18884333333 0.6432 -7.60395666667 16.7928 0.840191950562 0.969778056933 1508 Best 1508 1508;2571 13.5610333333 0.4329 -12.5328966667 26.09393 0.991788209397 1.04922572635 1245 Best 1245 1245;2521 0.0 0.0 ENST00000390424.2 NC immunoglobulin segment overlaps an immunoglobulin region 998 554883 chr3:13042289-13042363- NoOverlap chr3 13042289 13042363 - 9.49890408754 25 0.790707255665 1.9385200572 7.56038403034 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;13042288;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A13042289-13042363-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A13042289-13042363&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.899360092839 0.866051733474 1.03331583586 13083789 13083863 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;13083788;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A13042289-13042363-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A13083789-13083863&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MLKFKAFCLDYWQFLCLQPLHGAYK Same 555835 chr3:13042289-13042363- 944 944 54 0 650 13042289 13047521 Best 998 998;13400;35128 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:13042289-13047521&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52 0.0 12.112728 0.935 4.052312 8.060416 0.834537395696 0.963431148154 1537 Best 1537 1537;3707;37259 27.0601 0.775 6.73502 20.32508 1.04642772532 1.0186918677 381 Best 381 381;3871;27615 0.0 0.0 ENST00000613206.1 CDSintron coding exon(s) IQSEC1 alternative first exon 999 479223 chr10:122624536-122624607+ NoOverlap chr10 122624536 122624607 + 6.92755439381 24 0.690375371939 -6.05138351768 12.9789379115 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122624535;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122624536-122624607%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122624536-122624607&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.569078937446 0.866019804793 0.960064757222 124384052 124384123 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124384051;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122624536-122624607%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124384052-124384123&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELIFLSFLESNSGLALRLVNGGDQCQGQVEVLYQVSWGTVYDDTNDANVVCR Same 481128 chr10:122624536-122624607+ 942 942 57 0 465 122624536 122624832 670 670;999;1583;8711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122624536-122624832&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.0 15.9180291667 0.8567 -6.63947083333 22.5575 0.903767284071 0.962336225678 1284 1100 1100;1284;1868;1940 39.1186333333 0.8456 -9.8018875 48.9205208333 1.03794671907 0.961446052287 507 Best 507 507;1148;1284;1573 0.472094231021 chr10:122588944-122589267+ 0.203667856586 chr10:122613974-122614297+ ENST00000330163.8 CDSintron pseudo-exon DMBT1 pseudo_exon 1000 668114 chr19:1821684-1821785- Extension chr19 1821684 1821785 - 4.43989107889 34 0.693348861632 -4.94199397634 9.38188505523 chr19:1821513-1821785- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;1821683;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1821684-1821785-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A1821684-1821785&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.405952443036 0.865674098488 1.04290348906 1821683 1821784 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;1821682;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1821684-1821785-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A1821683-1821784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPSPSPWPGPLHAEMHVLLALSGRGCLVLRHVVMGSHSPCAHTPCAPPAPTGAK Same 668719 chr19:1821684-1821785- 986 986 14 0 651 1821684 1821785 Best 1000 1000 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:1821684-1821785&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.735294117647 0.662337662338 10.1567205882 0.874 -4.14545 14.3021705882 0.997874906851 1.01789420662 761 Best 761 761 5.75837647059 0.4198 -10.3532705882 16.1116470588 0.693011624273 1.03967850237 2839 Best 2839 2839 0.0 0.0976703326743 chr22:39685761-39686405+ ENST00000170168.8 ExtensionMid coding exon(s) REXO1 intronic CDS 1001 483231 chr11:1083652-1083816+ NoOverlap chr11 1083652 1083816 + 8.00330365029 55 0.446416002552 2.85164544366 5.15165820664 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1083651;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1083652-1083816%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1083652-1083816&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.756158191518 0.865042151537 1.01058507804 1081648 1081812 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1081647;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1083652-1083816%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1081648-1081812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPQGGLLAPDSSQPCPGPSGLCGNFNGLEGDDFKTASGLVEATGAGFANTWKAQSTCHDKLDWLDDPCSLNIESGEAR Same 485161 chr11:1083652-1083816+ 1058 1058 -57 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.630303030303 0.551020408163 25.1891545455 0.9392 9.8297 15.3594545455 0.991033368313 0.987651371756 827 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 49.32452 0.9693 11.0445781818 38.2799418182 0.961540367824 0.970709009413 1680 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.115483435774 chr11:1028226-1028387- 0.342254091655 chr11:1168862-1169026+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 1002 510860 chr16:20729230-20729355+ NoOverlap chr16 20729230 20729355 + 7.5923595613 42 0.532121694333 1.22031430332 6.37204525797 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20729229;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20729230-20729355%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20729230-20729355&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.708512677459 0.864405884257 1.04029890511 20740552 20740677 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20740551;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20729230-20729355%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20740552-20740677&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSPEKTAATVRGDFYVTGDRGMMDSDGYFWFVGRADDVIISSGFVDLPLLR Same 512498 chr16:20729230-20729355+ 1030 1030 -28 0 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.460317460317 0.331578947368 16.1905095238 0.9774 5.76221428571 10.4282952381 1.05898096823 1.05063287464 164 Best 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 40.1770857143 0.7959 12.536902381 27.6401833333 0.954791332891 1.04225698796 1764 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.868484837532 chr12:7324273-7324400+ 0.866674225903 chr12:7324273-7324400+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 1003 557406 chr3:164020256-164020414- NoOverlap chr3 164020256 164020414 - 6.37766981139 53 0.367474675062 -2.91855660446 9.29622641585 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;164020255;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164020256-164020414-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A164020256-164020414&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.415101966593 0.86418454716 1.00258436742 163738044 163738202 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;163738043;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164020256-164020414-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A163738044-163738202&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHQGPTDQTLLPGDYFFLKTLTSMSFKPKW*GPFQILLTTPTTAKLPGHNSWYHLSRLKKAPAAGPPPTNRPAVPCK Same 558375 chr3:164020256-164020414- 1115 1115 -112 20 515 164020256 164021752 771 771;1003;8769;19116;25346;28404;49038 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:164020256-164021752&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.459119496855 0.0 -1.9240754717 0.0261 -2.29381509434 0.369739622642 0.00271281063023 0.424468869025 40126 19419 19419;24940;25790;26229;28407;40126;56143 -1.9240754717 0.0082 -2.29381509434 0.369739622642 -0.0466905066726 0.515709965722 69776 13932 13932;30001;32108;33417;45789;56644;69776 0.0 0.0 not annotated fragments of a reteroviral ORF 1004 588813 chr9:35300773-35300859+ NoOverlap chr9 35300773 35300859 + 7.50892764741 29 0.898119194008 0.996827703098 6.51209994431 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35300772;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35300773-35300859%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35300773-35300859&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.916316909871 0.864091897838 1.01491131911 35300770 35300856 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35300769;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35300773-35300859%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35300770-35300856&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IDTMDELQCLVETVSEYLAEKEEEINRFGSLSK Same 589756 chr9:35300773-35300859+ 952 952 52 0 5 35300167 35307879 5 5;669;1004;1082;1090;2464;3976;4603;5133;9301;65975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35300167-35307879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.379310344828 0.478021978022 6.65889655172 1.0 1.63452068966 5.02437586207 0.618773578144 0.818679378496 2445 565 565;1736;1846;2357;2445;2557;2989;3035;3218;3591;8325 39.1430827586 1.0 19.1932931034 19.9497896552 1.04379623787 1.00338336508 420 Best 420 420;802;1067;1389;1934;2365;2375;2403;2753;3466;5635 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron coding exon(s) UNC13B cassette exon 1005 627511 chr12:92737435-92737518+ Extension chr12 92737435 92737518 + 8.45489998375 28 0.874815529325 2.67272859812 5.78217138563 chr12:92737435-92737521+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;92737434;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A92737435-92737518%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A92737435-92737518&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.956052830611 0.863972649785 0.965072216625 93131211 93131294 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;93131210;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A92737435-92737518%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A93131211-93131294&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPTDQLDLKKQQEAVWELFTSECTYFLDHLLVLK Same 628183 chr12:92737435-92737518+ 935 935 70 0 143 92729000 92737518 171 171;1005;1408 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:92729000-92737518&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.404761904762 0.294736842105 9.50615357143 0.9712 1.84046428571 7.66568928571 0.82254527512 0.97100766874 1591 811 811;1591;1673 20.7745821429 0.6403 4.30023928571 16.4743428571 1.00568591083 0.981823129951 1020 147 147;1020;1931 0.0 0.0 ENST00000344636.3 Extension5p coding exon(s) PLEKHG7 extended CDS significantly at 5' end, previous truncated domain now intact. 1007 588884 chr9:35835012-35835221+ NoOverlap chr9 35835012 35835221 + 7.67321574475 70 0.754149037047 4.71861142814 2.95460431661 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35835011;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35835012-35835221%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35835012-35835221&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00168804856 0.863798901237 0.864802796299 35835009 35835218 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35835008;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35835012-35835221%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35835009-35835218&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YFRSGAPPVINPLHTHFPGDTAVPGVFSLTLSWTLPNRTSGIFNVSSPLPGDWFLAAHLPQAHGHISVKVG Same 589828 chr9:35835012-35835221+ 974 974 33 0 277 35829249 35842438 362 362;425;536;1007;2241;12378;33483;41023;50301;66958 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35829249-35842438&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.604761904762 0.279255319149 13.3399614286 0.9591 5.56581 7.77415142857 1.02499969003 1.02356804013 527 Best 527 527;571;572;815;1277;3226;54814;57000;63888;72554 44.2810842857 0.9643 15.8741285714 28.4069557143 0.978945337269 1.00691369382 1441 753 753;986;1017;1241;1441;19083;51774;53783;58586;72919 0.0 0.215965543108 chr16:377378-377585- ENST00000377988.6,ENST00000472010.1,ENST00000377996.5,ENST00000464519.6 UTR5,NC,UTR5intron,NCintron coding exon(s) TMEM8B 5' extension by 5 exons 1008 480229 chr10:22475972-22476061- NoOverlap chr10 22475972 22476061 - 7.5180901289 30 0.777190814069 0.749446551005 6.76864357789 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;22475971;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A22475972-22476061-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A22475972-22476061&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.875142605183 0.863357179452 1.02909107518 22764901 22764990 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;22764900;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A22475972-22476061-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A22764901-22764990&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TELFPVAAAAASLFLLMLFLIFISV*VGSGPLHQPLPQNC Same 482139 chr10:22475972-22476061- 951 951 57 5 653 22475972 22476061 Best 1008 1008 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:22475972-22476061&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 0.504201680672 4.73361 0.9327 -5.58782666667 10.3214366667 0.671193426691 1.07751819809 2203 Best 2203 2203 3.76786666667 0.323 -6.22037 9.98823666667 0.319265953074 0.85986129624 4453 Best 4453 4453 0.0 0.0781862389163 chr6:166307255-166308142- not annotated putative regulatory region 1009 473095 chr1:89203293-89203370- NoOverlap chr1 89203293 89203370 - 9.42246925831 26 0.652201113909 -0.13691924627 9.55938850458 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;89203292;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A89203293-89203370-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A89203293-89203370&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.789300312804 0.863153330057 1.05058836337 89668976 89669053 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;89668975;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A89203293-89203370-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A89668976-89669053&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IFQPVVMVTIVRLQCVGKSYLMNHLAA Same 474974 chr1:89203293-89203370- 1009 1009 0 0 654 89203293 89203370 Best 1009 1009 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:89203293-89203370&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.423076923077 0.0 16.3811730769 0.6731 4.04463846154 12.3365346154 0.813909086322 1.05232636115 1616 Best 1616 1616 23.7631730769 0.3417 8.03069615385 15.7324769231 0.855547093507 0.950094353813 2296 Best 2296 2296 0.489239696464 chr1:89197110-89197304- 0.422192104467 chr1:89197110-89197304- not annotated putative regulatory region 1010 566410 chr5:170234995-170235066+ NoOverlap chr5 170234995 170235066 + 8.05473332107 24 0.996904961725 -1.43701249361 9.49174581468 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;170234994;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A170234995-170235066%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A170234995-170235066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.786750573016 0.862737925294 1.05197223372 169661999 169662070 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;169661998;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A170234995-170235066%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A169661999-169662070&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTDHKLNVDKVIKNINTISSELKKIK Same 567408 chr5:170234995-170235066+ 1039 1039 -29 0 655 170234995 170246011 Best 1010 1010;1438 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:170234995-170246011&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.277777777778 0.75 6.06693333333 0.9585 -4.62170833333 10.6886416667 0.665301514829 1.0612443378 2223 1816 1816;2223 5.71598333333 0.3663 -7.524625 13.2406083333 0.426067592154 0.934915518681 3835 2769 2769;3835 0.0 0.0 ENST00000421269.4 NC protein-coding gene protein coding gene ENSG00000234511 1014 584194 chr8:54678466-54678531+ NoOverlap chr8 54678466 54678531 + 7.70827729797 22 0.841702906844 -3.17651370845 10.8847910064 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;54678465;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54678466-54678531%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A54678466-54678531&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.732333522088 0.860763336314 1.02979844244 55591026 55591091 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;55591025;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54678466-54678531%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A55591026-55591091&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AIFIHITFSFFNLCLGNGWFLDDVVIKDPTTNYEYAFFCHR Same 585125 chr8:54678466-54678531+ 965 965 49 0 612 54678466 54679932 939 939;1014;3978 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:54678466-54679932&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.378787878788 0.423076923077 14.5449681818 0.9374 -3.46012272727 18.0050909091 0.933504443126 0.990265814171 1174 748 748;1174;7218 23.6983727273 0.6913 -10.6876681818 34.3860409091 1.04902844412 0.998127933945 338 205 205;338;2796 0.0 0.0 ENST00000521465.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 1015 711103 chr6:108166664-108166765+ Extension chr6 108166664 108166765 + 8.22648235367 34 0.923522231049 4.63489704272 3.59158531094 chr6:108166664-108166783+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108166663;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108166664-108166765%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108166664-108166765&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.0298055618 0.860353726518 0.806784681448 108487868 108487969 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108487867;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108166664-108166765%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108487868-108487969&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LEGSWRAAAPGGEAGAAGRDSGSAHQPLRPGTASMSKPAGSTSGYLSGR Same 711708 chr6:108166664-108166765+ 981 981 34 0 659 108157665 108177636 Best 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.823529411765 0.869318181818 9.94211176471 0.967 2.85238235294 7.08972941176 0.898113173068 0.968374105982 1298 Best 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 2.41089705882 0.5597 -4.59034411765 7.00124117647 0.324435595211 0.762544862999 4406 Best 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000368986.8 Extension5p not annotated putative regulatory region 1016 503451 chr14:23102923-23103051- NoOverlap chr14 23102923 23103051 - 5.1740906696 43 0.849071949837 -1.25180934543 6.42590001503 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23102922;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23102923-23103051-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23102923-23103051&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.786287510973 0.860093020244 1.05016809648 23572132 23572260 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23572131;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23102923-23103051-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23572132-23572260&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLLLLVLPYFSPFWPYPVLAHPQPSVIAYAACCQLDSEDRPLAGTIVYCAQHLTSPSLSHSDIVMVTAA Same 505290 chr14:23102923-23103051- 943 943 73 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.589147286822 0.191964285714 6.54388372093 0.9772 -0.604125581395 7.14800930233 0.820419578562 1.01283543571 1597 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 12.999927907 0.6116 0.196053488372 12.8038744186 0.88904532193 0.95861186981 2156 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0282014210544 chr6:32184171-32184222- protein-coding gene protein-coding gene ENSG00000283654 1020 524606 chr18:54424499-54424558+ NoOverlap chr18 54424499 54424558 + 6.7021400243 20 0.768644998856 -7.51438003182 14.2165200561 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;54424498;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54424499-54424558%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A54424499-54424558&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.507877364726 0.858687010169 0.948907434729 51950869 51950928 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;51950868;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54424499-54424558%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A51950869-51950928&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDADISSFGLHYQLQTLDMDDYI*DTADPILAQLSSGSK Same 526042 chr18:54424499-54424558+ 905 905 115 9 663 54415278 54424623 Best 1020 1020;1399;1951;1974;2187;2640;3987;7059;26481;56311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:54415278-54424623&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.277777777778 9.7509 0.8442 -8.246845 17.997745 0.733292564056 0.980639999889 1963 1312 1312;1532;1793;1867;1963;3255;3308;3468;3714;4481 22.714385 0.5669 -7.3002 30.014585 0.982831319861 1.04277939623 1380 85 85;217;311;1380;1426;2121;2398;2457;2578;2838 0.0 0.0 pseudogene unitary pseudogene ENSG00000283613 1023 490633 chr12:9518162-9518314+ NoOverlap chr12 9518162 9518314 + 6.21429799731 51 0.429892423896 -1.43582744166 7.65012543897 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9518161;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9518162-9518314%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9518162-9518314&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.469406426436 0.857198077318 1.05300129371 9670758 9670910 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9670757;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9518162-9518314%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9670758-9670910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MILLIWLAVLLPFYFHFQVNLNFSKEKSLPGSNIDLQVSAASNSLCALWAVDQSVLLLRNYGQLSAQTVSD Same 492609 chr12:9518162-9518314+ 1113 1113 -90 0 666 9480562 9518314 Best 1023 1023;1860;2492;4418;4887;28290;30014;57029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9480562-9518314&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.392156862745 0.17 17.2795921569 0.7093 2.84272941176 14.4368627451 1.11719606831 0.990879931959 7 Best 7 7;32;190;2502;3527;4447;12142;19347 27.9965745098 0.4837 3.7973 24.1992745098 1.08085801494 1.04005158252 122 4 4;8;122;2361;2406;2774;2953;4665 0.527989495588 chr12:31144905-31145054- 0.467690203209 chr12:31144905-31145054- ENST00000518709.5 NCintron pseudo-exon AC092821.1 pseudo exons 1024 574601 chr6:34246806-34246871- NoOverlap chr6 34246806 34246871 - 11.9445408921 22 0.803843886334 1.25730011138 10.6872407808 ENST00000335352.7,ENST00000394990.8,ENST00000413013.6,ENST00000468145.1,ENST00000476320.5,ENST00000481533.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34246805;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34246806-34246871-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34246806-34246871&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.881927327547 0.857112017832 1.04147777047 34214583 34214648 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34214582;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34246806-34246871-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34214583-34214648&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVVHGWQSGYQHKRMPLLDVKT Same 575633 chr6:34246806-34246871- 996 996 28 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.590909090909 0.358695652174 20.8918545455 0.9791 5.0957 15.7961545455 1.01320791456 1.03031597549 627 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 20.77075 0.4273 0.675718181818 20.0950318182 0.872915384389 1.02176278136 2221 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0 ENST00000335352.7,ENST00000463083.1 CDS,NC protein-coding gene protein-coding gene ENSG00000186577 1026 472688 chr1:62999293-62999403- NoOverlap chr1 62999293 62999403 - 5.70007577458 37 0.939604791333 -0.965435057073 6.66551083165 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;62999292;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62999293-62999403-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A62999293-62999403&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.824982344902 0.856999686251 1.04604898295 63464964 63465074 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;63464963;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62999293-62999403-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A63464964-63465074&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WRYDEPIMVMGPDINYNFNFNFTYSRVMGPGGGVEMGWSFR Same 474567 chr1:62999293-62999403- 1015 1015 11 0 668 62997933 63000329 Best 1026 1026;13743;18049;27623;33268;34189;37177;59194;68808 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:62997933-63000329&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.468468468468 0.672727272727 2.05188108108 1.0 -0.615297297297 2.66717837838 0.275085015801 0.659051869938 6220 Best 6220 6220;8200;13946;16945;28973;32781;63612;68420;69109 0.992754054054 0.9362 -3.07871891892 4.07147297297 0.200831752341 0.649606372091 6223 Best 6223 6223;11538;12991;22844;28460;29330;40736;45828;71146 0.0 0.0 not annotated putative regulatory region 1028 486535 chr11:125947868-125948005+ NoOverlap chr11 125947868 125948005 + 4.18354353859 46 0.706911010048 -3.46581960631 7.64936314491 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125947867;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125947868-125948005%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125947868-125948005&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.487186360029 0.856131404599 1.0687946155 125817763 125817900 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125817762;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125947868-125948005%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125817763-125817900&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGSVELACGSGPAPLLVLWSFTPLGSLVPRPVAVTDGAMSKVEAIASALGVVSLRNSSLVLGELHEGARGHFLCQVLHVAGGQLHAAYSHLTLAVLGEGLAPAAAGPR Same 488497 chr11:125947868-125948005+ 1004 1004 24 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.659420289855 0.541176470588 6.63712608696 0.8377 -5.21846086957 11.8555869565 0.926388822745 1.06452304229 1207 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 18.0442195652 0.5686 -4.9966173913 23.0408369565 1.09916089043 1.04639193442 55 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0493333677443 chr19:41714971-41715158+ protein-coding gene protein-coding gene ENSG00000283703 1030 699019 chr4:2630936-2631004+ Extension chr4 2630936 2631004 + 22.1480913992 23 0.844831006332 8.49417405543 13.6539173437 chr4:2630936-2631172+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;2630935;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A2630936-2631004%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A2630936-2631004&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.87304884502 0.855839029471 0.950907485045 2632663 2632731 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;2632662;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A2630936-2631004%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A2632663-2632731&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LCERDPYQLYQRLEQQAREYVLEMK Same 699646 chr4:2630936-2631004+ 1007 1007 23 0 137 2625247 2631004 164 164;491;1030 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:2625247-2631004&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.594202898551 0.495215311005 27.6292434783 0.93 11.2120956522 16.4171478261 0.966629103459 1.02847916905 989 544 544;670;989 63.7633782609 0.9539 23.5644782609 40.1989 0.97234803774 1.03117369291 1546 1524 1524;1546;1740 0.0 0.0 ENST00000324666.9,ENST00000512465.5 Extension5p,NC coding exon(s) FAM193A 5' extended by 4 new coding exons 1032 503441 chr14:23100597-23100680- NoOverlap chr14 23100597 23100680 - 5.53687499251 28 0.848454479068 -3.4656715095 9.00254650201 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23100596;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23100597-23100680-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23100597-23100680&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.649063140064 0.855492584431 1.05502494876 23569806 23569889 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23569805;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23100597-23100680-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23569806-23569889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CYFHGPSITTSLVFTVHMWKSPGCQGPSVATLHK Same 505280 chr14:23100597-23100680- 976 976 56 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.0 7.15632142857 0.9462 -4.54219285714 11.6985142857 0.812302551212 1.07097487475 1621 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 10.8061785714 0.3676 -4.20560357143 15.0117821429 0.675576461022 0.983318552505 2900 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 1033 491108 chr12:40443395-40443451+ NoOverlap chr12 40443395 40443451 + 12.8468947724 19 1.0 -2.7561314357 15.6030262081 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40443394;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40443395-40443451%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40443395-40443451&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.784898133192 0.855319869234 0.992337518811 40837197 40837253 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40837196;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40443395-40443451%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40837197-40837253&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FQNGIIVIWDKNTRLSVILDPNWNVCISLTSE Same 493085 chr12:40443395-40443451+ 926 926 107 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.350877192982 0.59375 16.4092263158 0.9827 -2.64697894737 19.0562052632 0.960625995948 0.987494558732 1034 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 32.2684631579 0.9406 -12.5835684211 44.8520315789 0.984133767401 0.964996738139 1360 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.233801091782 chr11:1177454-1177633+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 1036 574267 chr6:30057112-30057156- NoOverlap chr6 30057112 30057156 - 6.64931327899 15 0.931763688614 -7.53165359497 14.180966874 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;30057111;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30057112-30057156-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A30057112-30057156&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.333907406238 0.854544281039 0.966448266885 30024889 30024933 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;30024888;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30057112-30057156-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A30024889-30024933&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EIKEFERVIAYLLFQPCSR Same 575296 chr6:30057112-30057156- 1002 1002 34 0 80 30056989 30058171 93 93;601;1036;2276;5125 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:30056989-30058171&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.803571428571 19.7388666667 0.9484 2.05552666667 17.68334 0.855859590464 1.00680719148 1446 903 903;1446;1727;2503;6815 18.58998 0.3387 -0.876286666667 19.4662666667 0.529885519036 0.988696995206 3423 2810 2810;3423;3544;3993;9246 0.0 0.0 ENST00000421692.5,ENST00000376797.7 NC,NCintron pseudogene unitary pseudogene ENSG00000204623 1037 531031 chr19:37830103-37830333- NoOverlap chr19 37830103 37830333 - 3.85507533496 77 0.827954329946 -3.30194804266 7.15702337762 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37830102;231;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830103-37830333-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37830103-37830333&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.651189358866 0.854160908118 1.06807981404 38320743 38320973 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38320742;231;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830103-37830333-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38320743-38320973&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLHECDITSFDVCLPLKLFVTGGIDGSVRIWDFHGRLVTEFDSALHFGPLCFASNRSDLLLTFNQRIYIVSCLKLLPPAQLVHLR Same 532498 chr19:37830103-37830333- 892 892 145 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.480519480519 0.456221198157 10.1627532468 0.9221 -4.69216883117 14.8549220779 0.969607788993 0.975381391103 968 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 18.6034181818 0.4732 -5.13914935065 23.7425675325 0.975446115565 1.05390318976 1505 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.172658678086 chr19:37892578-37895456- 0.487798162854 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 1038 534689 chr2:109964689-109964808+ NoOverlap chr2 109964689 109964808 + 7.05689253174 40 0.523598077363 -0.170227505267 7.227120037 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;109964688;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109964689-109964808%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A109964689-109964808&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.603891298864 0.853378509486 1.05466921116 110722266 110722385 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110722265;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109964689-109964808%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110722266-110722385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RYYFYNH*TTQVAAYFFICVDLALALFEEPELLPLPFLVSKP Same 536041 chr2:109964689-109964808+ 1085 1085 -47 8 674 109963466 109974092 Best 1038 1038;1288;1607;3960;4614;5824;6691;9138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:109963466-109974092&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.458333333333 0.652173913043 9.84721 0.5159 3.339035 6.508175 0.564072189222 0.960258658644 2750 1343 1343;1741;2554;2750;2805;2859;2974;4366 24.5581225 0.6499 1.8925175 22.665605 1.0815459435 1.04843887527 119 Best 119 119;225;546;552;1151;1223;1320;1375 0.0 0.0 ENST00000425917.1,ENST00000454928.5 NC,NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000186148) 1040 549354 chr22:50715666-50715743+ NoOverlap chr22 50715666 50715743 + 13.1682501091 26 0.662326648708 7.87562302787 5.29262708127 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50715665;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50715666-50715743%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50715666-50715743&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.923147026396 0.852857671055 0.878893041275 51154094 51154171 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51154093;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50715666-50715743%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51154094-51154171&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PPQSLFERQGLPGPEKLPGSLRKGIPRTK None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641025641026 0.4992 18.30355 0.9483 11.2306192308 7.07293076923 0.957122490986 0.888538136752 1048 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 34.2335615385 0.6684 11.4648615385 22.7687 1.04841134951 1.03354531497 353 Best 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.0315744642841 chr18:10454982-10455039+ ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 1042 521544 chr17:42042831-42043046- NoOverlap chr17 42042831 42043046 - 5.20086664665 72 0.690439375058 -0.219475022 5.42034166865 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;42042830;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42042831-42043046-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A42042831-42043046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.772860794552 0.851828476519 1.03411058776 40194849 40195064 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;40194848;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42042831-42043046-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A40194849-40195064&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QALAVNQGQPPFEGQAEGGGACPGLATTPASRGVKVELDPAKVAVLTTVYCMAKEDVPNDRCSALLELQRFNLCQALLGTEHGDYYSPRRVRDMQVGDSQK Same 522964 chr17:42042831-42043046- 985 985 57 0 202 42039741 42043379 246 246;490;677;1042;1254;1300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:42039741-42043379&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.606481481481 0.305084745763 6.61256666667 0.9688 -2.81268055556 9.42524722222 0.94969956975 1.07506969787 1090 211 211;393;721;1090;1261;1575 20.4037611111 0.674 -3.92188055556 24.3256416667 0.97251156971 1.04471507028 1544 256 256;463;585;758;813;1544 0.0 0.0 ENST00000587304.1,ENST00000436535.3 NC,CDSintron protein-coding gene protein-coding gene ENSG00000267221 1043 483228 chr11:1082884-1082976+ NoOverlap chr11 1082884 1082976 + 10.2538741423 31 0.560948717381 3.82562902474 6.42824511759 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1082883;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1082884-1082976%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1082884-1082976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.820356711191 0.851490256333 1.01168727632 1080880 1080972 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1080879;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1082884-1082976%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1080880-1080972&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAGCCPSRPSAAALPLAPSQGDHNDSYALLGELAPCGSTDKQTCLKTVVLLADK Same 485158 chr11:1082884-1082976+ 1032 1032 11 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.634408602151 0.430555555556 16.9501645161 0.9119 4.64351612903 12.3066483871 1.01858938056 1.05518193673 582 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 25.3944806452 0.7456 1.11091612903 24.2835645161 1.06184055835 1.05330127907 212 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0825890123849 chr11:1230490-1230600+ 0.148063412367 chr11:1230490-1230600+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 1044 484451 chr11:57038246-57038311+ NoOverlap chr11 57038246 57038311 + 16.3222139166 22 0.926941190342 -0.72098195011 17.0431958667 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57038245;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57038246-57038311%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57038246-57038311&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.905787384502 0.851454378352 1.03694152687 56805721 56805786 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;56805720;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57038246-57038311%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A56805721-56805786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLSTCASHLTAVTIFYGVLSYMYLCHR Same 486396 chr11:57038246-57038311+ 954 954 90 0 338 57037567 57038422 463 463;582;884;1044;1236;1826;3363;6311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57037567-57038422&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.454545454545 0.0 20.3115863636 0.9748 1.91717272727 18.3944136364 1.01128735478 1.00345488396 643 346 346;643;688;1159;1835;1855;2138;3085 33.3840545455 0.9064 -10.5131318182 43.8971863636 1.01041450407 0.964304878175 938 792 792;938;1237;1246;1582;1841;2263;2401 0.0982099758001 chr11:56988914-56989843+ 0.272012361869 chr7:141918876-141919820+ pseudogene OR5AK4P olfactory receptor family 5 subfamily AK member 4 pseudogene (ENSG00000283307) 1047 547971 chr22:19029781-19030212+ NoOverlap chr22 19029781 19030212 + 7.16137640614 144 0.382872277748 4.03521944293 3.12615696322 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;19029780;432;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A19029781-19030212%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A19029781-19030212&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.815074093692 0.850616304334 0.86526588806 19017294 19017725 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;19017293;432;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A19029781-19030212%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A19017294-19017725&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPARTAAGSVCSVCGEPRGGATYPAGVLEVSERRLQEGLAAVREELGAGIEALRAELRAELDALRALLPPPPSPPARREPRAVPRAAPRGPTLPRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD Same 549391 chr22:19029781-19030212+ 1244 1244 -197 0 366 19029521 19030212 510 510;1047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:19029521-19030212&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.791666666667 0.989843028624 11.7424666667 0.6034 5.40591666667 6.33655 1.06962343092 0.944432881717 87 Best 87 87;1422 9.88133888889 0.3793 1.27852152778 8.60281736111 0.658417110483 0.848387307721 2967 Best 2967 2967;3855 0.0 0.103082421524 chr2:26778042-26778511+ ENST00000440005.6 NCintron under investigation; now made coding Two adjacent NPRs highlight ORFs in a previously unannotated region, although in distinct frames. However, indel variants rs10709444 and rs11356224 have no support for the genomic conformation in 1000 genomes data, and if these are 'corrected' the NPRs can be united into a prospective single exon 233aa CDS. These variants are now under investigation by the Genome Reference Consortium as possible errors in the genome assembly, and GENCODE cannot annotate this as a protein-coding gene until fixed genomic sequence becomes available. However, previously unidentified duplicants of this locus with coding potential have now been identfiied at [chr22:21,360,601-21,361,299 (-)] and [chr22:18,633,984-18,634,682 (+)], and these have been respectively annotated as protein-coding genes ENSG00000286102 and ENSG00000286175 in GENCODEv31. These three loci share homology with mouse protein-coding gene B830017H08Rik / ENSMUSG00000116652. 1048 592931 chr9:114099106-114099171- NoOverlap chr9 114099106 114099171 - 10.9830410589 22 0.869178856544 2.28925446218 8.69378659671 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;114099105;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114099106-114099171-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A114099106-114099171&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.884352459794 0.850396711138 1.04019083825 116861386 116861451 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;116861385;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114099106-114099171-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A116861386-116861451&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IAAHRDLARSLEQGPEGPETPIQVVLR Same 593884 chr9:114099106-114099171- 980 980 68 0 201 114097703 114099171 245 245;413;642;1048;5747 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:114097703-114099171&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.69696969697 0.643274853801 14.6149090909 0.9961 5.29856363636 9.31634545455 0.944374979032 0.985897269748 1116 144 144;336;489;1116;1913 6.61236818182 0.5177 -3.29219090909 9.90455909091 0.403415454935 0.808806873534 3941 115 115;195;206;3221;3941 0.0 0.0 ENST00000468460.1 NC coding exon(s) KIF12 coding exons added to make inferred transcript model 1049 562777 chr4:144370278-144370319- NoOverlap chr4 144370278 144370319 - 4.21620715942 14 0.940804804412 -9.81752844793 14.0337356074 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;144370277;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A144370278-144370319-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A144370278-144370319&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0762409140036 0.850203371197 0.95406662537 145291430 145291471 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;145291429;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A144370278-144370319-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A145291430-145291471&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCYHNY*FYKYTQMPK Same 563772 chr4:144370278-144370319- 1048 1048 1 6 679 144370278 144370319 Best 1049 1049 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:144370278-144370319&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.380952380952 0.0 -1.30942857143 0.9997 -7.33615714286 6.02672857143 0.021258733946 0.765346145686 32109 Best 32109 32109 -12.4716 0.7097 -17.3587571429 4.88715714286 -0.0425904413866 0.496885564511 67106 Best 67106 67106 0.0 0.0 not annotated putative regulatory region 1050 492300 chr12:64533268-64533333+ NoOverlap chr12 64533268 64533333 + 10.8050317724 22 0.839398794537 1.62861818075 9.17641359161 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;64533267;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A64533268-64533333%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A64533268-64533333&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.875545683078 0.849609765401 1.0471794786 64927048 64927113 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;64927047;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A64533268-64533333%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A64927048-64927113&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MGTAIYKLSGKINFQVKKTHIPGR Same 494282 chr12:64533268-64533333+ 989 989 61 0 279 64533268 64541660 364 364;1050 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:64533268-64541660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.409090909091 0.725274725275 13.5991409091 0.9527 -1.13878636364 14.7379272727 0.925659229459 1.03899117158 1209 693 693;1209 13.9770954545 0.3706 -2.54545454545 16.52255 0.661968219807 0.982004306669 2957 2290 2290;2957 0.0 0.0 ENST00000541885.1 AntiNC coding exon(s) RASSF3 5' extension by 3 exons 1060 494607 chr12:22134869-22134940- NoOverlap chr12 22134869 22134940 - 5.5816207702 24 0.759486025279 -5.63619171518 11.2178124854 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;22134868;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22134869-22134940-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A22134869-22134940&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.481471123761 0.847856657204 1.00807293625 22287803 22287874 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;22287802;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22134869-22134940-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A22287803-22287874&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPSQDQLSILHNFKEVLFSTMSSEDLLNSLVLFCFVLFVQK Same 496604 chr12:22134869-22134940- 991 991 69 0 58 22116633 22134940 65 65;1060;2224;6558;10486;27168 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:22116633-22134940&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.388888888889 0.0 -0.191904166667 0.7804 -10.8164583333 10.6245541667 0.259993369395 1.07062287799 6653 904 904;2475;2558;2619;3486;6653 -0.433104166667 0.3856 -8.85174166667 8.4186375 0.160704108786 0.769266732424 7533 88 88;1118;2424;2918;3483;7533 0.0 0.0 ENST00000544732.5 NCintron pseudogene unitary pseudogene ENSG00000283582 1061 505777 chr14:105586940-105587317- NoOverlap chr14 105586940 105587317 - 4.71796196998 126 0.445685995972 -1.2035984417 5.92156041168 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105586939;378;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105586940-105587317-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105586940-105587317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.544105069708 0.84783755201 1.04818820469 106053277 106053654 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106053276;378;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105586940-105587317-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106053277-106053654&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GALSSPAQPPDLALYPPGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTYAVTSILRVAAEDWKKGETFSCMVGHEALPLAFTQKTIDRMAGKPTHINVSVVMAEADGTCY None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.650793650794 0.57469592808 13.9612968254 0.9282 -3.24392142857 17.205218254 0.99515754605 0.953868214809 788 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 16.1800039683 0.5722 -11.3887555556 27.5687595238 0.998853259053 1.08869254324 1125 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0322948308141 chr19:49713420-49713605+ ENST00000390539.2 NC immunoglobulin segment overlaps an immunoglobulin region 1062 491558 chr12:52267330-52267536+ NoOverlap chr12 52267330 52267536 + 6.106014483 69 0.46046110995 0.635337678311 5.47067680469 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52267329;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52267330-52267536%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52267330-52267536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.660169879743 0.847011962947 1.03497470723 52661114 52661320 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52661113;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52267330-52267536%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52661114-52661320&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLSCSLLVPQNSKLEVEVTQSEQQGEVALSDNRCKLVELEGTMQKARQYQEVMNSKLGLNVKAASSCHLLDGEEQR Same 493536 chr12:52267330-52267536+ 1064 1064 -2 0 489 52264108 52277736 722 722;766;1062;1070;1290;2405;17351 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52264108-52277736&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.589371980676 0.11320754717 10.2461927536 0.9476 -1.48968695652 11.7358797101 1.00325668727 1.03628414467 709 546 546;672;709;783;1453;1608;1712 34.5490391304 0.8509 -1.97699275362 36.5260318841 0.977035871447 0.993224055311 1471 783 783;839;1030;1208;1231;1471;2431 0.52913299666 chr12:52315893-52316113- 0.417495457912 chr12:52315893-52316113- ENST00000553310.6 UTR5intron pseudogene keratin family pseudogene (ENSG00000284883) 1064 716323 chr7:57169158-57169403+ Extension chr7 57169158 57169403 + 4.75552682906 82 0.33588158999 -6.92234995016 11.6778767792 chr7:57169158-57169409+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57169157;246;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57169158-57169403%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57169158-57169403&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.365615417683 0.846558124474 0.938139351111 57236865 57237110 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57236864;246;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57169158-57169403%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57236865-57237110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IMIQHIYQMPSIYINIILAYTISLLGILIYPSHLITSLLCLEGILSLFIINTLIPLNIYFTVAFIIPITLLVFTALLVSISNTYSLDYVYNLNLLR Same 716920 chr7:57169158-57169403+ 872 872 192 0 244 57167069 57169403 311 311;1064;1719;18339;30405;36290 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57167069-57169403&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.325203252033 0.212251941329 7.30618902439 0.3619 -8.05158780488 15.3577768293 0.817988496094 0.966529916073 1605 Best 1605 1605;1729;3056;18611;18962;23881 34.1657097561 0.7782 -16.8841487805 51.0498585366 1.03189887183 1.07540315924 596 484 484;596;1739;1843;2085;2580 0.862162700581 chrM:10470-10766+ 1.02349119365 chrM:10470-10766+ pseudogene MTCO3P10 mitochondrially encoded cytochrome c oxidase III pseudogene 10 (ENSG00000231537) 1065 571885 chr6:60400254-60400316+ NoOverlap chr6 60400254 60400316 + 14.8904093447 21 0.891022245474 3.6429523854 11.2474569593 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;60400253;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60400254-60400316%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A60400254-60400316&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.881443332987 0.846220450012 1.0284194577 57372291 57372353 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;57372290;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60400254-60400316%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A57372291-57372353&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTARSLPAVQSDERLQPLLNHLR Same 572910 chr6:60400254-60400316+ 990 990 75 0 689 60400254 60400316 Best 1065 1065 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:60400254-60400316&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539682539683 0.0 19.803452381 0.9314 4.6841 15.119352381 0.934593761913 1.03324947462 1169 Best 1169 1169 30.6120571429 0.4799 5.99596190476 24.6160952381 0.934560481838 1.04121851834 1918 Best 1918 1918 0.990806423814 chr6:57507387-57507454+ 0.994437021711 chr6:57507387-57507454+ pseudogene primase, DNA, polypeptide 2 (58kDa) (PRIM2) pseudogene (ENSG00000283453) 1066 551743 chr3:28865227-28865292+ NoOverlap chr3 28865227 28865292 + 6.18122267588 22 0.95672125235 -4.57712267339 10.7583453493 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;28865226;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28865227-28865292%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A28865227-28865292&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.562616886407 0.845691560144 1.02899185894 28906718 28906783 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;28906717;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28865227-28865292%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A28906718-28906783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSANKSSGAPSYSRWSSSQPHQVIGSF Same 552680 chr3:28865227-28865292+ 1089 1089 -23 0 690 28865227 28865292 Best 1066 1066 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:28865227-28865292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 6.56799090909 0.971 -5.98055 12.5485409091 0.709641730282 1.06548137947 2048 Best 2048 2048 9.65224090909 0.5792 -6.67137272727 16.3236136364 0.684954907862 0.993239125415 2864 Best 2864 2864 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 1068 485938 chr11:111457988-111458044+ NoOverlap chr11 111457988 111458044 + 6.47115777041 19 0.868305003755 -5.9482737262 12.4194314966 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111457987;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111457988-111458044%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111457988-111458044&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.5014600885 0.845159857237 0.99310351526 111328713 111328769 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111328712;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111457988-111458044%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111328713-111328769&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGQTLPHMGGPQALLDTNVLVAQRQVIAVLQPCQESPESGVQETLEAAIK Same 487896 chr11:111457988-111458044+ 995 995 73 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.614035087719 0.0 6.75957894737 0.9792 -11.3663421053 18.1259210526 0.741497715272 0.977232439524 1921 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 17.1291736842 0.7841 -17.9388684211 35.0680421053 0.963409982554 0.967663246409 1659 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000527555.1 NC pseudogene unitary pseudogene ENSG00000255093 1069 563855 chr5:35788951-35789031+ NoOverlap chr5 35788951 35789031 + 6.13712215755 27 0.997145432607 -3.08192606988 9.21904822742 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;35788950;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35788951-35789031%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A35788951-35789031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.672953380027 0.844903939878 1.05209621597 35789053 35789133 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;35789052;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35788951-35789031%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A35789053-35789133&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLHLRPVMPSQIGDRKWLHGLQAALQNFLKGYPAIVRQLHSVSNFEISYYFAFSESQK Same 564843 chr5:35788951-35789031+ 1195 1195 -126 0 24 35787955 35790367 24 24;33;42;72;207;789;797;872;1069;2173;48626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:35787955-35790367&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.493827160494 0.203007518797 5.88884814815 0.9979 -7.48316296296 13.3720111111 0.832185514313 1.06168598217 1548 20 20;37;72;448;957;1150;1273;1329;1548;1888;12605 11.8095148148 0.6836 -13.6700111111 25.4795259259 0.953656661075 1.0619707025 1786 77 77;86;112;376;544;1371;1761;1786;2084;2608;14924 0.0 0.0 ENST00000506526.5,ENST00000356031.7,ENST00000510433.1 NC,CDSintron,AntiNCintron coding exon(s) SPEF2 5 consecutive coding exons including an alternative termination codon 1070 491556 chr12:52266552-52266707+ NoOverlap chr12 52266552 52266707 + 5.76401343813 52 0.496103080562 -1.02882111588 6.79283455401 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52266551;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52266552-52266707%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52266552-52266707&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.519839701848 0.844883632508 1.05890160208 52660336 52660491 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52660335;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52266552-52266707%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52660336-52660491&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VHLLANFSNIPNATICSNYSYVLNLSHCPHLLQEIHVLQSHISDTSVVVKLDNSQDLNMDCIIAEIKAQYDDIVTCSWAKAESWYHGCLPDVAPAC Same 493534 chr12:52266552-52266707+ 1122 1122 -52 0 489 52264108 52277736 722 722;766;1062;1070;1290;2405;17351 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52264108-52277736&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.532051282051 0.182456140351 15.3883038462 0.9636 -2.35406346154 17.7423673077 0.995511858199 0.934412869312 783 546 546;672;709;783;1453;1608;1712 50.6341038462 0.9086 -1.73544038462 52.3695442308 0.992646859016 0.956139989418 1231 783 783;839;1030;1208;1231;1471;2431 0.464978102453 chr12:52316859-52317023- 0.399335380574 chr12:52471132-52471296- ENST00000553310.6 UTR5intron pseudogene keratin family pseudogene (ENSG00000284883) 1071 530413 chr19:18258203-18258274- NoOverlap chr19 18258203 18258274 - 6.91146254539 24 0.720621932301 -4.33797497054 11.2494375159 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;18258202;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18258203-18258274-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A18258203-18258274&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.607103218968 0.844681316737 1.01065576786 18369013 18369084 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;18369012;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18258203-18258274-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A18369013-18369084&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGEMTHSSVIPPLAPGVRRVSLGYESSPSGSLPPLFNQESPWR Same 531876 chr19:18258203-18258274- 1024 1024 47 0 692 18236900 18263956 Best 1071 1071;2349;2964;6293;18798;31506 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:18236900-18263956&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.638888888889 0.411428571429 3.6936 0.8172 -10.6293833333 14.3229833333 0.585980768575 1.05882808793 2621 1074 1074;2068;2444;2621;2710;8481 3.94913333333 0.3267 -12.21775 16.1668833333 0.432248851855 1.01576133893 3816 2208 2208;2924;3816;3839;4374;14268 0.0 0.0 ENST00000599638.2,ENST00000392413.4 NC,CDSintron protein-coding gene protein-coding gene ENSG00000284797; found after looking at high-scoring intergenic PCCRs 1073 514637 chr16:67210140-67210226- NoOverlap chr16 67210140 67210226 - 7.37823097459 29 0.789806973373 0.545141355745 6.83308961885 ENST00000393992.5,ENST00000409037.5,ENST00000409509.5,ENST00000424285.5,ENST00000433915.5,ENST00000447579.5,ENST00000629962.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;67210139;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A67210140-67210226-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A67210140-67210226&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.855091436666 0.844325780093 1.02877257888 67244043 67244129 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;67244042;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A67210140-67210226-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A67244043-67244129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSLGKLQRLTDAGCTALGGLQELQSLDMAEGGNWPRPWAVCTGLHPSWPPSAWPTALH Same 516289 chr16:67210140-67210226- 1001 1001 72 0 345 67210140 67211021 474 474;605;1073 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:67210140-67211021&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.64367816092 0.229249011858 15.3384206897 0.9681 2.52274482759 12.8156758621 1.0339987975 1.05352449246 430 Best 430 430;842;858 21.0147655172 0.6665 -5.93591034483 26.9506758621 1.07014715735 1.04472679792 171 Best 171 171;1158;1313 0.0 0.0749044033276 chr19:11192831-11194042- ENST00000393992.5 CDS pseudogene LRRC29 (ENSG00000125122) changed to pseudogene from protein-coding after complete structure became apparent and disablements thus revealed 1074 500723 chr14:22163645-22163713+ NoOverlap chr14 22163645 22163713 + 5.03721740842 23 0.803329783952 -6.30161735545 11.3388347639 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22163644;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22163645-22163713%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22163645-22163713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.406172373532 0.843929512723 1.00658268629 22631541 22631609 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22631540;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22163645-22163713%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22631541-22631609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIK None NA NA 0 597 22163645 22163866 920 920;1074 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22163645-22163866&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 5.21097391304 0.9273 -11.002373913 16.2133478261 0.727583805357 1.01180682397 1976 1823 1823;1976 10.0310391304 0.4343 -12.1009 22.1319391304 0.762615602308 1.07219568992 2593 Best 2593 2593;2801 0.0 0.0 ENST00000390458.3 NC immunoglobulin segment overlaps an immunoglobulin region 1075 505787 chr14:105600695-105600799- NoOverlap chr14 105600695 105600799 - 7.96200572423 35 0.50244384135 -0.0165228877749 7.978528612 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105600694;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600695-105600799-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105600695-105600799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.595453414797 0.843835653822 1.05540765193 106067032 106067136 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106067031;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600695-105600799-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106067032-106067136&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CTTDSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSK None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.657142857143 0.717948717949 14.92136 0.921 -0.19468 15.11604 1.05001975204 1.00721939168 262 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 15.6302771429 0.4544 -4.92559428571 20.5558714286 1.04503414455 1.05611116616 399 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0975391648549 chr16:28320076-28320921+ ENST00000390541.2 NC immunoglobulin segment overlaps an immunoglobulin region 1076 486989 chr11:5514949-5515011- NoOverlap chr11 5514949 5515011 - 9.89369531473 21 0.898207064927 -0.418085736888 10.3117810516 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;5514948;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A5514949-5515011-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A5514949-5515011&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.828733764727 0.843635802237 1.04614852976 5536179 5536241 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;5536178;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A5514949-5515011-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A5536179-5536241&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLGNPKAFQAILQIEQALQLLATEAPVLLPWVAPYLWGLGWLPAPSCSYPDTVPCSWNVSDTAEPK Same 488956 chr11:5514949-5515011- 999 999 77 0 13 5514607 5515011 13 13;1076;1994 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:5514607-5515011&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52380952381 0.0 15.2187428571 0.9306 0.739733333333 14.4790095238 0.898390213138 1.04211474733 1296 457 457;1296;21032 20.2736380952 0.4906 -2.29156190476 22.5652 0.918556970023 1.0458030835 2018 162 162;2018;2840 0.0 0.114082227541 chr11:5507591-5509558- ENST00000380184.1,ENST00000380259.6 UTR3,UTR5intron pseudo-exon UBQLNL 3' UTR signal; this is CDS in the parent of this retrogene 1077 513863 chr16:30775877-30775978- NoOverlap chr16 30775877 30775978 - 8.94262933205 34 0.698067040961 4.40561179378 4.53701753827 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;30775876;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A30775877-30775978-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A30775877-30775978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.957837523395 0.843189590372 0.901922301555 30787198 30787299 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;30787197;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A30775877-30775978-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A30787198-30787299&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFLCGPMSSPAAARASTSVPAAAGPTPEVTVAARVSFSSSSWSSSGGPA Same 515516 chr16:30775877-30775978- 1017 1017 60 0 694 30775877 30787359 Best 1077 1077;38679;43581;62235;70302 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:30775877-30787359&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.764705882353 1.16571428571 15.5527382353 0.8469 7.42981470588 8.12292352941 0.974840260588 0.996516586225 934 Best 934 934;20105;43351;55875;59797 8.24435294118 0.4819 -0.0705411764706 8.31489411765 0.530382539163 0.807154591096 3421 Best 3421 3421;17092;24351;48419;73017 0.0 0.101890780801 chr1:15943599-15943715- ENST00000623557.1,ENST00000324685.10,ENST00000493683.5 NC,AntiUTR3,AntiNC not annotated putative regulatory region 1078 467700 chr1:160262611-160262658+ NoOverlap chr1 160262611 160262658 + 5.5766125042 16 0.810680361639 -9.54978746176 15.126399966 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;160262610;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160262611-160262658%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A160262611-160262658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.235683674437 0.843173077048 0.940823144514 160232401 160232448 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;160232400;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160262611-160262658%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A160232401-160232448&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRGLRPTENRARGACALPK Same 469566 chr1:160262611-160262658+ 914 914 164 0 695 160262310 160262658 Best 1078 1078;1192;6610;14541;28188 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:160262310-160262658&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.604166666667 1.17647058824 5.0579625 0.8704 -10.87595625 15.93391875 0.46227054482 1.02923415197 3400 Best 3400 3400;4685;5491;10173;13442 2.13375625 0.3091 -12.17554375 14.3093 0.195443052218 0.924363165646 6373 Best 6373 6373;6638;7045;12631;15012 0.0 0.0 ENST00000442130.1,ENST00000485079.1 NC,AntiCDSintron not annotated putative regulatory region 1080 514708 chr16:68015720-68015770- NoOverlap chr16 68015720 68015770 - 4.84442934043 17 0.964672671541 -8.03335890787 12.8777882483 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;68015719;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A68015720-68015770-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A68015720-68015770&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.155653507712 0.842605258174 0.978837392345 68049623 68049673 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;68049622;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A68015720-68015770-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A68049623-68049673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MTDRILYIVSNMSSVPWEGSAAGR None NA NA 0 697 68014273 68015770 Best 1080 1080;1663 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:68014273-68015770&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.490196078431 0.354166666667 2.95641176471 0.9719 -9.00082352941 11.9572352941 0.390811351063 1.06068796735 4121 1944 1944;4121 3.43701176471 0.3739 -9.62854117647 13.0655529412 0.248920715314 0.891032765036 5220 3559 3559;5220 0.0 0.0 ENST00000574912.1,ENST00000570709.6 NC,AntiUTR5intron protein-coding gene protein coding gene ENSG00000263201 1081 509063 chr15:62246492-62246656- NoOverlap chr15 62246492 62246656 - 5.67149638805 55 0.422651879287 -1.95073637055 7.62223275859 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;62246491;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A62246492-62246656-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A62246492-62246656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.427664439123 0.842455811387 1.05490069703 62538691 62538855 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;62538690;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A62246492-62246656-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A62538691-62538855&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPFSAEPLPPEPPAGPSEVEQKLQAEAEHLWKELENLAGQLQAQVEENEGLSHLNQEQEEVAQVVGAR Same 510787 chr15:62246492-62246656- 1146 1146 -65 0 698 62246165 62256086 Best 1081 1081;16980;22956 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:62246165-62256086&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.587878787879 0.141509433962 10.6409836364 0.7906 -3.10296909091 13.7439527273 1.08017671248 0.989975813744 49 Best 49 49;830;7857 14.4517090909 0.5976 -6.11808181818 20.5697909091 1.04121289682 1.05533659345 462 Best 462 462;2638;4690 0.929420005682 chr9:128260465-128260802- 0.632265281784 chr9:128260465-128260802- ENST00000570077.1,ENST00000562306.5 NC,NCintron pseudogene extension golgin subfamily A pseudogene extended (ENSG00000166104) 1082 588812 chr9:35300167-35300217+ NoOverlap chr9 35300167 35300217 + 4.81595286004 17 0.910507631755 -8.20171162661 13.0176644867 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35300166;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35300167-35300217%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35300167-35300217&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.172853185586 0.842389699936 0.974651454069 35300164 35300214 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35300163;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35300167-35300217%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35300164-35300214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YAQKYDTLDRRRKKKSLYNHFEDSER Same 589755 chr9:35300167-35300217+ 1028 1028 54 0 5 35300167 35307879 5 5;669;1004;1082;1090;2464;3976;4603;5133;9301;65975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35300167-35307879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.274509803922 0.0 3.67183529412 0.984 -18.0633941176 21.7352294118 0.597356249114 0.934249127241 2557 565 565;1736;1846;2357;2445;2557;2989;3035;3218;3591;8325 33.2088176471 0.9424 -8.95927647059 42.1680941176 0.98213134253 0.989469889638 1389 420 420;802;1067;1389;1934;2365;2375;2403;2753;3466;5635 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron coding exon(s) UNC13B cassette exon 1086 547902 chr22:16845918-16846040+ NoOverlap chr22 16845918 16846040 + 3.3267195719 41 0.62500693169 -5.85960475991 9.18632433182 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;16845917;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A16845918-16846040%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A16845918-16846040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.189367489908 0.841128207853 1.04736717141 17326808 17326930 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;17326807;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A16845918-16846040%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A17326808-17326930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QPGGALSGHHVAPFPSPAHLPGVLLAVGLATVLLMGLGLLLSPSLPHACPMQAWKTRWRRLGQPQVPAEYVILR Same 549316 chr22:16845918-16846040+ 1098 1098 -12 0 702 16844398 16846040 Best 1086 1086;1985;4677;27537 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:16844398-16846040&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.650406504065 0.155303030303 1.74390731707 0.1795 -1.57821463415 3.32212195122 0.051193080951 0.733954623364 22883 14497 14497;19551;22883;31233 10.8223585366 0.343 -3.38439268293 14.2067512195 0.778223972472 0.995172740175 2554 45 45;67;2554;4162 0.0 0.0 pseudogene uncharacterised pseudogene (ENSG00000283535) 1087 577273 chr7:7673372-7673452+ NoOverlap chr7 7673372 7673452 + 8.25355185513 27 0.905362981048 2.2299888243 6.02356303083 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;7673371;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A7673372-7673452%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A7673372-7673452&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.924649424409 0.840882988095 0.975971981598 7713003 7713083 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;7713002;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A7673372-7673452%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A7713003-7713083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HCVMFLFQVAAAAAAAAAAAAAAAAAAAAMFHFFRKPPESKKPSVPETEADGFVLLGESF Same 578313 chr7:7673372-7673452+ 1010 1010 77 0 703 7673372 7673452 Best 1087 1087 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:7673372-7673452&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.432098765432 0.54 14.2121962963 0.9966 4.0055962963 10.2066 1.01726819233 1.03688928949 594 Best 594 594 16.7743185185 0.4937 2.02331481481 14.7510037037 0.875364442677 0.952855668053 2211 Best 2211 2211 0.0 0.0 ENST00000463725.5,ENST00000223129.8 NC,AntiUTR5intron protein-coding gene protein coding gene ENSG00000219545 1088 497648 chr12:130424136-130424198- NoOverlap chr12 130424136 130424198 - 12.1142759493 21 0.827560700026 -0.600828554659 12.715104504 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;130424135;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A130424136-130424198-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A130424136-130424198&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.86114685584 0.840557672647 1.01486855355 130908681 130908743 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;130908680;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A130424136-130424198-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A130908681-130908743&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SITMPDSRAAAPHAKPPPRVAQGPLVCDLNFLFTAACQTNLSHPFTGFLFVLVSIPGDSLAGCLSFSLHF Same 499661 chr12:130424136-130424198- 1034 1034 54 0 478 130414095 130424786 705 705;1088;2060;14312;67443 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:130414095-130424786&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.296470588235 7.6471047619 0.8543 -4.19802380952 11.8451285714 0.602962648605 1.05968887351 2532 981 981;1927;2532;4152;47833 2.07569047619 0.8453 -15.3308285714 17.4065190476 0.414080314956 1.03246551454 3885 1381 1381;1440;1513;3885;39756 0.0 0.0 ENST00000261655.8 CDSintron coding exon(s) RIMBP2 3 cassette exons 1090 588815 chr9:35301337-35301429+ NoOverlap chr9 35301337 35301429 + 6.23100959582 31 0.869657927185 -0.727812864127 6.95882245994 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35301336;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35301337-35301429%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35301337-35301429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.818926131944 0.839787658323 1.0412360956 35301334 35301426 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35301333;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35301337-35301429%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35301334-35301426&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLAPQSQSSVIKSVFSRLNPLKIFSEKEETKKDDDQSKPPR Same 589758 chr9:35301337-35301429+ 1012 1012 78 0 5 35300167 35307879 5 5;669;1004;1082;1090;2464;3976;4603;5133;9301;65975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35300167-35307879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.354838709677 0.369047619048 5.27652258065 0.9791 -5.82406451613 11.1005870968 0.78323869094 1.08259243614 1736 565 565;1736;1846;2357;2445;2557;2989;3035;3218;3591;8325 8.91700322581 0.8103 -13.4051870968 22.3221903226 0.833839146257 1.08089468547 2375 420 420;802;1067;1389;1934;2365;2375;2403;2753;3466;5635 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron coding exon(s) UNC13B cassette exon 1091 572289 chr6:99531637-99531714+ NoOverlap chr6 99531637 99531714 + 5.65731141602 26 0.933584520309 -3.73201529338 9.38932670939 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;99531636;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99531637-99531714%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A99531637-99531714&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.621733529221 0.839440327042 1.05115025921 99979513 99979590 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;99979512;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99531637-99531714%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A99979513-99979590&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFLSVDEVGEALQMNPRDFKEKYNEVKPSKSDS Same 573314 chr6:99531637-99531714+ 1087 1087 4 0 705 99531419 99531785 Best 1091 1091;2523;5369 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:99531419-99531785&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.384615384615 0.0 8.21408461538 0.9398 -1.41516538462 9.62925 0.754880551703 1.03919420326 1843 Best 1843 1843;2302;2895 20.6026076923 0.8467 -3.43784230769 24.04045 0.987188998745 1.05608564863 1315 1178 1178;1315;1701 0.0 0.0 ENST00000452647.2 NC protein-coding gene protein coding gene ENSG00000228439 1092 495235 chr12:51198560-51198673- NoOverlap chr12 51198560 51198673 - 6.35298431077 38 0.878018575851 1.31813683714 5.03484747363 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;51198559;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51198560-51198673-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A51198560-51198673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.924772397519 0.838527852251 0.96481065571 51592343 51592456 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;51592342;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51198560-51198673-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A51592343-51592456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCLLLQVLTQENLATVLTGVMVPAGAVTQPLLIPISIAGQVAGQQGLAVWTIPTATVAALPGLTAASPTGGVFKPPLAGLQGNGNSSQDCTRPPTLYYTPAR Same 497232 chr12:51198560-51198673- 1014 1014 78 0 215 51196844 51218124 265 265;283;557;693;1092;2383;53800;58134;68865;69357 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:51196844-51218124&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.622807017544 0.271428571429 8.31356842105 1.0 2.62353684211 5.69003157895 0.845920270039 0.910819248306 1487 69 69;438;866;867;1487;2229;24410;46155;50649;71456 31.7404789474 0.9099 13.3016105263 18.4388684211 1.05318328333 1.01328038244 288 172 172;288;697;1392;1579;3071;9854;33434;34785;72898 0.0 0.0 ENST00000389243.8,ENST00000549309.5 UTR5,NC coding exon(s) POU6F1 first coding exons 1094 485914 chr11:111448581-111448643+ NoOverlap chr11 111448581 111448643 + 14.5697621618 21 0.812537103038 4.75490487544 9.81485728636 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111448580;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111448581-111448643%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111448581-111448643&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.871864389816 0.837241379067 1.01757465193 111319306 111319368 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111319305;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111448581-111448643%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111319306-111319368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FFNPWPGQDACFPCGSEATQPEKGKDTCVCR Same 487872 chr11:111448581-111448643+ 1043 1043 51 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.634920634921 0.1575 15.0957190476 0.9331 2.73688095238 12.3588380952 0.883558145734 1.0446001122 1350 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 34.4786904762 0.6196 9.03115238095 25.4475380952 1.01574840137 1.03889281509 837 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000531398.1,ENST00000525890.1 AntiUTR5intron,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 1096 516235 chr17:7430834-7430890+ NoOverlap chr17 7430834 7430890 + 4.50204736465 19 0.76204920633 -9.42458421306 13.9266315777 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7430833;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7430834-7430890%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7430834-7430890&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.167086387912 0.836721238319 0.941633224833 7334153 7334209 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7334152;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7430834-7430890%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7334153-7334209&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NTDSQAPFYPKFLAYSRDTACAK Same 517609 chr17:7430834-7430890+ 931 931 165 0 708 7420340 7438334 Best 1096 1096;1905;1920;2283;5350;13988;14787;48569;72692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7420340-7438334&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.561403508772 0.275362318841 2.89978421053 0.9867 -16.9749315789 19.8747157895 0.629345113224 0.95366378314 2394 1008 1008;1355;2074;2394;2819;5308;13112;27391;64992 -14.7882684211 0.7095 -37.6998526316 22.9115842105 0.172309766163 1.00980397934 7062 3602 3602;3907;7062;7245;8899;17053;24490;30052;59755 0.0 0.29202943288 chr16:30723584-30725157+ ENST00000575310.1 NCintron protein-coding gene protein-coding gene ENSG00000283439 1097 507340 chr15:74218496-74218570+ NoOverlap chr15 74218496 74218570 + 10.2996879733 25 0.675938658732 -6.25801614136 16.5577041146 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;74218495;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A74218496-74218570%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A74218496-74218570&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.838995741653 0.836628290722 0.973763402953 74510837 74510911 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;74510836;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A74218496-74218570%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A74510837-74510911&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLRPSLSPVFPHPGFCKNDGQHDAQLHVEALRLDEPLGR Same 509064 chr15:74218496-74218570+ 983 983 114 0 709 74217332 74218720 Best 1097 1097;1468;1726 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:74217332-74218720&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.573333333333 0.347222222222 16.202772 0.8651 -7.484412 23.687184 0.925782879951 0.973474922211 1208 Best 1208 1208;1283;1369 29.526384 0.6448 -5.555552 35.081936 1.04856893776 1.00693309857 349 135 135;349;1404 0.0 0.0 ENST00000559243.1 NC coding exon(s) CCDC33 additional 5' exons 1102 578755 chr7:99604416-99604595+ NoOverlap chr7 99604416 99604595 + 4.7616499876 60 0.606402431271 -1.51894328992 6.28059327751 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;99604415;180;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A99604416-99604595%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A99604416-99604595&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.565483524303 0.83542758538 1.05940465346 99202039 99202218 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;99202038;180;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A99604416-99604595%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A99202039-99202218&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DMKGFSWAIVPALTSLGYLIILVVSIFPFWVRLTNEESHEVFFSGLFENCFNAKCWKPRPLSSK Same 579798 chr7:99604416-99604595+ 1100 1100 2 0 714 99604416 99610562 Best 1102 1102;1689;5751;11556 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:99604416-99610562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 0.348330914369 8.20121 0.7316 -0.486785 8.687995 0.912156407794 1.06132297064 1260 Best 1260 1260;2328;2849;12026 8.20121 0.2287 -0.486785 8.687995 0.405159303536 0.864268147375 3934 Best 3934 3934;4228;4926;15447 0.0 0.0 ENST00000429679.1 NC protein-coding gene protein coding gene ENSG00000244219 1104 554452 chr3:187745311-187745421+ NoOverlap chr3 187745311 187745421 + 3.87089451584 37 0.904831130054 -4.66251354171 8.53340805755 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;187745310;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187745311-187745421%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A187745311-187745421&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.487501510015 0.834866948717 1.06284575652 187463099 187463209 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;187463098;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187745311-187745421%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A187463099-187463209&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IMIMSSGGGSGTSGNSGGGGSSSSSGGSNSNNHLVSGLS Same 555402 chr3:187745311-187745421+ 1070 1070 34 0 576 187739883 187745776 875 875;1104;7504;8158;11541;34107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:187739883-187745776&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.984478935698 0.452424324324 0.9219 -3.43388648649 3.88631081081 0.170511386229 0.755666034145 10256 3665 3665;8409;10256;24508;44991;56743 -5.90208918919 0.5891 -11.3774837838 5.47539459459 0.086455516403 0.691068975203 12969 5778 5778;12942;12969;14939;33269;59538 0.0 0.0 ENST00000450760.1,ENST00000406870.6,ENST00000470319.1 NC,AntiUTR5,AntiNC under investigation Finds a putative 38aa CDS antisense to the 5' UTR of BCL6. However, it is difficult to interpret the accuracy of the PhyloCSF signal here as the region has deep conservation over a wider region, presumptively due to being the promoter of BCL6, and the 38aa CDS has very low complexity. There is also very little transcriptional support for the locus in human or mouse. 1108 520818 chr17:29128422-29128505- NoOverlap chr17 29128422 29128505 - 6.40996070898 28 0.752211468245 -2.09911436035 8.50907506933 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;29128421;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29128422-29128505-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A29128422-29128505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.687291666165 0.833550021471 1.05741309061 27455440 27455523 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;27455439;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29128422-29128505-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A27455440-27455523&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPQPPTSPIPPETSQRARSPAPTLAMNGPGAATAEGLSEEAQGLSR Same 522236 chr17:29128422-29128505- 1051 1051 57 0 147 29124548 29133836 176 176;1108;2567;6559;7208;9587 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:29124548-29133836&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.654761904762 0.390092879257 5.96769642857 0.9638 -3.58159285714 9.54928928571 0.703266591002 1.05253318154 2077 498 498;1507;2077;2179;3115;4205 10.4499642857 0.6638 -7.23590714286 17.6858714286 0.82283378717 1.03649712484 2400 450 450;1147;2200;2400;2550;3310 0.0 0.0881612445851 chr2:240676545-240676744- ENST00000527372.5,ENST00000528322.6 CDSintron,NCintron coding exon(s) MYO18A alternative first exon plus four cassette exons 1109 545026 chr20:35277717-35277797- NoOverlap chr20 35277717 35277797 - 9.12774802137 27 0.681657242808 1.96242583791 7.16532218346 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;35277716;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A35277717-35277797-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A35277717-35277797&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.829449803846 0.833073622568 1.02931122209 33865520 33865600 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;33865519;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A35277717-35277797-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A33865520-33865600&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPPQPQPQPQPQPQPEPSPWGPLDDVRFLIACTSWY None NA NA 0 718 35277717 35277935 Best 1109 1109;3434 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:35277717-35277935&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.728395061728 0.684782608696 12.6962444444 0.7372 5.2913 7.40494444444 0.703174863796 0.940486255037 2078 Best 2078 2078;2121 13.2672444444 0.4095 3.66708518519 9.60015925926 0.594687340306 0.808943740742 3186 Best 3186 3186;3447 0.0 0.124915317 chr17:81219880-81220056- ENST00000424358.1,ENST00000433764.5 NC,NCintron protein-coding gene protein coding gene ENSG00000126005 1110 482203 chr10:113126694-113126849- NoOverlap chr10 113126694 113126849 - 5.73370577739 52 0.724252161206 0.434705819075 5.29899995831 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113126693;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113126694-113126849-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113126694-113126849&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.806365537269 0.832839979013 1.01719517739 114886453 114886608 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114886452;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113126694-113126849-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114886453-114886608&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGCGAVLPAAGSRACCLRPDAAQGPRRPRAPLEGSTRPAARAAAAHPRHRGAAHTSSAAR Same 484127 chr10:113126694-113126849- 1054 1054 56 0 719 113118964 113126911 Best 1110 1110;6516;16816;37245;38490;54651;58469;62875;67669;70173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118964-113126911&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.801282051282 0.81038961039 1.82997884615 0.7925 -4.17356730769 6.00354615385 0.369485153651 0.968014144592 4406 Best 4406 4406;18572;33940;40718;63931;65767;72176;72358;72407;73429 -4.54666538462 0.6231 -10.8072403846 6.260575 0.185108061209 0.760640732859 6655 Best 6655 6655;10141;25415;26332;35901;38764;51629;51984;53928;72240 0.0 0.0 ENST00000346198.5 AntiCDSintron not annotated putative regulatory region 1113 561223 chr4:17876461-17876532- NoOverlap chr4 17876461 17876532 - 9.0152165629 24 0.918738714682 1.92576676607 7.08944979683 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17876460;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17876461-17876532-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17876461-17876532&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.885806579668 0.832587800155 1.01366446806 17878084 17878155 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17878083;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17876461-17876532-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17878084-17878155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NIHIESSHNIDLNKIAMNSNLQVVVKRLEDTISIAK Same 562214 chr4:17876461-17876532- 1029 1029 84 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.319444444444 0.553846153846 13.5202083333 1.0 5.33292083333 8.1872875 0.940258245978 0.957029823692 1138 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 11.1183875 0.778 -3.78576666667 14.9041541667 0.690182670662 0.963662012738 2849 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 1114 481634 chr10:100135400-100135462- NoOverlap chr10 100135400 100135462 - 10.6307141894 21 0.882131322049 0.990952173869 9.63976201557 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100135399;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100135400-100135462-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100135400-100135462&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.847863337907 0.832155953013 1.04797778392 101895157 101895219 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101895156;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100135400-100135462-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101895157-101895219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EYSSVYTLYFGSWPTMVFHGYKAVKEALIDQGDKSLGR Same 483550 chr10:100135400-100135462- 1023 1023 91 0 722 100135400 100140071 Best 1114 1114;1368;8196 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100135400-100140071&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.428571428571 0.0 2.56715238095 0.8576 -3.19603809524 5.76319047619 0.177561579048 0.816988312738 9829 Best 9829 9829;18502;23911 19.7424238095 0.667 0.133019047619 19.6094047619 0.953928020546 1.01449912913 1781 Best 1781 1781;1870;4445 0.0 0.369116289249 chr10:94687770-94687932+ pseudogene unitary pseudogene ENSG00000283232 1115 483230 chr11:1083424-1083564+ NoOverlap chr11 1083424 1083564 + 5.87514249553 47 0.45470619078 -1.90321490676 7.77835740229 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1083423;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1083424-1083564%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1083424-1083564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.420246868031 0.830453060913 1.05538662422 1081420 1081560 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1081419;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1083424-1083564%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1081420-1081560&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVPGAPPLAMPLTVSLIVPLPTASFSVFRPSSYHIMVSMAIGVRLQVQLAPVMQLFVTLDQASQGQVQGK Same 485160 chr11:1083424-1083564+ 1199 1199 -84 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.624113475177 0.364906832298 18.7541765957 0.9146 -6.33659574468 25.0907723404 1.06905234823 1.06884841519 90 Best 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 33.8916765957 0.9448 -18.9748829787 52.8665595745 1.00501896322 0.984235645172 1033 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.101704361949 chr11:1168642-1168779+ 0.321703565594 chr11:1231423-1231560+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 1117 507870 chr15:95929520-95929558+ NoOverlap chr15 95929520 95929558 + 4.8312538633 13 0.930296787976 -9.49627722227 14.3275310856 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;95929519;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95929520-95929558%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A95929520-95929558&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0170192401488 0.830339432898 0.956028740348 96472749 96472787 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;96472748;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95929520-95929558%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A96472749-96472787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TCGGGELTTSYATVCNSYQDKSSCSGLTSSPK Same 509601 chr15:95929520-95929558+ 1082 1082 35 0 724 95929520 95940999 Best 1117 1117;29291;60545 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:95929520-95940999&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.0 0.874753846154 0.9971 -9.40606153846 10.2808153846 0.167972192914 1.0013859227 10418 Best 10418 10418;11963;40919 -0.0582384615385 0.3831 -10.7443 10.6860615385 0.0826043681304 0.77702898876 13463 Best 13463 13463;23021;52225 0.0 0.0 not annotated putative regulatory region 1121 530972 chr19:35790588-35790713- NoOverlap chr19 35790588 35790713 - 7.03470475617 42 0.71761472423 2.33917617461 4.69552858156 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35790587;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35790588-35790713-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35790588-35790713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.905198568448 0.828096962155 0.953771773941 36281490 36281615 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36281489;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35790588-35790713-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36281490-36281615&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GYPWGGPGPGLPPPPELHPWLPLQLICGDMPTTTSDLYSFCILIQEVFTGE Same 532439 chr19:35790588-35790713- 1065 1065 56 0 212 35784826 35806955 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 0.193846153846 9.86137619048 0.9561 1.0293 8.83207619048 0.989800875059 1.04749770754 835 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 7.91408095238 0.5303 -4.19103571429 12.1051166667 0.726582434329 0.95391344743 2722 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.199132914344 chr17:58604978-58605129- ENST00000433059.1 NC pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 1123 478054 chr10:89786640-89786834+ NoOverlap chr10 89786640 89786834 + 4.30389388754 65 0.370881560646 -5.36172456833 9.66561845587 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;89786639;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A89786640-89786834%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A89786640-89786834&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.262220135644 0.827792427461 0.998862915365 91546397 91546591 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;91546396;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A89786640-89786834%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A91546397-91546591&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFICTDQEVIISN*H*MTVQTLKLSLSFKLDYFFAIFIPVALFVI*YIVKLSI*YINSDCNINQFFKYLLIFLITIFWLPPTTSFNSLSGDR Same 479948 chr10:89786640-89786834+ 1086 1086 37 35 729 89786640 89787109 Best 1123 1123;1250;58078 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:89786640-89787109&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.297435897436 0.290178571429 -2.50985230769 0.0307 -2.58200615385 0.0721538461538 -0.0135693741363 0.375947582365 49582 24953 24953;41255;49582 18.34248 0.6831 -11.9951138462 30.3375938462 0.966085708018 0.969947691871 1620 Best 1620 1620;1993;3578 0.0 0.83275126566 chrM:12337-14148+ pseudogene NADH dehydrogenase subunit 5 pseudogene (ENSG00000283402) 1124 534328 chr2:89537864-89538052+ NoOverlap chr2 89537864 89538052 + 6.61055873737 63 0.401381789205 0.682706328612 5.92785240875 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89537863;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89537864-89538052%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89537864-89538052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.594402354887 0.827751879975 1.04568639706 91800210 91800398 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91800209;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89537864-89538052%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91800210-91800398&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PLCVINLSPLVLDDHTPQCNCTPPTLCTTISHGIYYNYYLYPFNIEYQILASTVLYVLWKNIGRKVDSHQHQKMQFKPDGVTVGTVLGLTALAATIAVVVGGAPDSYWVLQDQER Same 535705 chr2:89537864-89538052+ 1189 1189 -65 0 52 89533188 89547118 59 59;529;844;1124;3586;7862 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89533188-89547118&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.566137566138 0.465517241379 11.2655031746 0.543 0.0317634920635 11.2337396825 1.06287965355 1.03971310413 123 10 10;123;831;1300;2657;4594 32.7107095238 0.7734 1.9848968254 30.7258126984 0.922900274832 1.01069396648 1991 312 312;340;1357;1759;1894;1991 0.999238014973 chr4:4197166-4198103- 1.02565304381 chr4:4197166-4198103- pseudogene Otopetrin 1 (OTPO1) unprocessed pseudogene (ENSG00000283427) 1125 590047 chr9:120847295-120847354+ NoOverlap chr9 120847295 120847354 + 6.66724494621 20 0.851018539712 -5.01190003306 11.6791449793 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;120847294;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A120847295-120847354%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A120847295-120847354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.559688819661 0.827655080833 1.01133901392 123609573 123609632 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;123609572;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A120847295-120847354%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A123609573-123609632&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMLDKELAASVNILLKASSL Same 590994 chr9:120847295-120847354+ 1040 1040 85 0 730 120847295 120847354 Best 1125 1125 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:120847295-120847354&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.0 15.036675 0.9476 -1.568115 16.60479 0.908945447527 1.01714804958 1272 Best 1272 1272 19.711265 0.4383 -3.018155 22.72942 0.842428794664 1.04616672248 2341 Best 2341 2341 0.0 0.18767582203 chr6:33417251-33417310- ENST00000432640.5 NC pseudogene unitary pseudogene ENSG00000226752 1129 539229 chr2:73079818-73080018- NoOverlap chr2 73079818 73080018 - 6.13878357255 67 0.919853240094 2.82848811483 3.31029545772 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;73079817;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73079818-73080018-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A73079818-73080018&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.924536246907 0.826732760476 0.889538797742 73306946 73307146 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;73306945;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73079818-73080018-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A73306946-73307146&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EDALNPFLFQGSRDPPSLSSASPPGSRESSIHSGPEELPTPPEPDFPPPPLPPWASHHRGGPSPPCSPLSEAWPLTTSSAPPGEPALLPGPHEPSPPGGSPALLR Same 540607 chr2:73079818-73080018- 1052 1052 77 0 311 73071669 73081530 418 418;1129;1310;1891;4235;7622;14465;18194;23824;54581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:73071669-73081530&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.646766169154 0.326298701299 6.14029104478 0.9982 0.583795522388 5.55649552239 0.843209896211 0.961657402495 1495 166 166;734;1495;1711;1973;3802;9955;14922;47668;73713 -3.32925970149 0.5877 -10.1514492537 6.82218955224 0.266255672275 0.792133327847 4993 2300 2300;2572;2797;3173;3182;4993;30735;31537;41635;57875 0.0 0.039337885817 chr17:16491745-16491990- ENST00000486777.5,ENST00000258098.6,ENST00000482554.5 NC,CDSintron,NCintron coding exon(s) RAB11FIP5 2kb cassette exon 1132 573552 chr6:2749346-2749408- NoOverlap chr6 2749346 2749408 - 5.11523343623 21 0.883852685043 -6.23160009157 11.3468335278 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;2749345;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A2749346-2749408-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A2749346-2749408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.38399653114 0.826214998944 1.01287575438 2749580 2749642 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;2749579;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A2749346-2749408-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A2749580-2749642&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TFCVSFLCSQEKEALKSHNCVLIYKSETEGDENHTPESSLIGLTTK Same 574581 chr6:2749346-2749408- 1071 1071 61 0 505 2743890 2749408 749 749;1132;3346 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:2743890-2749408&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.380952380952 0.4921875 6.63982380952 0.9328 -8.0366047619 14.6764285714 0.697582183151 1.04268583419 2104 869 869;2104;2460 5.88171428571 0.5335 -17.5209142857 23.4026285714 0.700686735074 1.08679765562 2807 2194 2194;2807;4999 0.0 0.0 ENST00000274643.8 UTR5 coding exon(s) MYLK4 alternative first exon 1133 483238 chr11:1086330-1086407+ NoOverlap chr11 1086330 1086407 + 6.69657688416 26 0.674566731811 -3.58926156966 10.2858384538 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1086329;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1086330-1086407%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1086330-1086407&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.571114463124 0.825672644 1.03144664934 1084326 1084403 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1084325;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1086330-1086407%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1084326-1084403&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ECPCVHNNDLYSSGAKIKVDCNTW*AGPACPGCLPGPTCSAGVATGER Same 485168 chr11:1086330-1086407+ 1116 1116 17 2 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.538461538462 0.713958810069 12.1121423077 0.8855 -2.05274230769 14.1648846154 0.912977113605 1.04032115947 1256 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 27.6039346154 0.9208 -15.2423307692 42.8462653846 0.996880853014 0.916809135077 1159 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0291773709215 chr11:1176514-1176665+ 0.244265986972 chr11:1176514-1176665+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 1134 479220 chr10:122568594-122568653+ NoOverlap chr10 122568594 122568653 + 7.50326492488 20 0.857753871977 -3.94160990715 11.444874832 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122568593;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122568594-122568653%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122568594-122568653&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.647590634112 0.824955704442 1.02097137825 124328110 124328169 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124328109;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122568594-122568653%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124328110-124328169&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASGCVTAGLPLRLVNGGDRCQGRVEVLYQG Same 481125 chr10:122568594-122568653+ 1057 1057 77 0 174 122568594 122568902 210 210;843;1134 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122568594-122568902&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.357142857143 11.79771 0.9124 -9.4259 21.22361 0.827969272099 0.952216763904 1571 213 213;1045;1571 48.33815 0.8958 -7.50723 55.84538 1.00303506406 0.972844250577 1064 Best 1064 1064;1423;1537 0.154617398113 chr10:122613974-122614297+ 0.248766364557 chr10:122576399-122576722+ ENST00000330163.8 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 1136 503242 chr14:20435287-20435352- NoOverlap chr14 20435287 20435352 - 10.2819726901 22 0.844403753719 2.30441814932 7.97755454074 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;20435286;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20435287-20435352-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A20435287-20435352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.865162775754 0.824769919009 1.02842822944 20903446 20903511 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;20903445;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20435287-20435352-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A20903446-20903511&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLGGGGPRPPFSLEVSPGGWEAVLTFAYEGVLGPASQGDVLAAAEALGAPR Same 505113 chr14:20435287-20435352- 1050 1050 86 0 178 20430676 20435763 215 215;783;1136;1201;3984;5029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:20430676-20435763&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.712121212121 0.248120300752 14.9680181818 0.9857 1.47000909091 13.4980090909 0.977751206425 1.04874792282 912 70 70;912;1148;1271;2133;9110 22.3900136364 0.5887 4.15836363636 18.23165 0.97252571952 0.98762002223 1543 412 412;1247;1258;1543;1777;8205 0.0 0.107963010441 chr17:38578490-38578791- ENST00000344581.4 UTR5intron coding exon(s) KLHL33 alternative first exon 1138 529881 chr19:8390328-8390435- NoOverlap chr19 8390328 8390435 - 9.87120279007 36 0.890816188127 8.85677492039 1.01442786968 ENST00000328024.10,ENST00000594216.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;8390327;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A8390328-8390435-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A8390328-8390435&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.08287117709 0.824299595737 0.501807475034 8455212 8455319 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;8455211;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A8390328-8390435-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A8455212-8455319&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TRRPGSPLSWRFRRDRRLRSPTTNTRRGRSRRRAERR Same 531345 chr19:8390328-8390435- 1126 1126 12 0 738 8390328 8390435 Best 1138 1138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:8390328-8390435&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.768518518519 1.13286713287 -3.72278055556 0.9315 -2.409075 -1.31370555556 -0.0945487763294 0.241353943484 73630 Best 73630 73630 -14.2175055556 0.6629 -16.4097583333 2.19225277778 -0.0583057144366 0.493932801472 73311 Best 73311 73311 0.0 0.0 ENST00000593581.5,ENST00000351593.9,ENST00000328024.10,ENST00000601897.1,ENST00000598706.1,ENST00000600719.5 NC,UTR5intron,AntiCDS,AntiUTR5,AntiNC,AntiUTR5intron not annotated putative regulatory region 1140 579481 chr7:134209885-134209944+ NoOverlap chr7 134209885 134209944 + 9.23475008309 20 0.781905851835 -5.46009001732 14.6948401004 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;134209884;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134209885-134209944%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A134209885-134209944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.725590420894 0.824236854928 0.963304040585 133894637 133894696 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;133894636;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134209885-134209944%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A133894637-133894696&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILSPAQEEAAQKVRLPRIPAPLPEPGLPQNSGTQPDPRPAK Same 580524 chr7:134209885-134209944+ 1053 1053 87 0 334 134208697 134210967 457 457;654;903;1140;1971;3155;4173;9542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:134208697-134210967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.65 0.326086956522 16.91108 0.9682 -2.933295 19.844375 0.959099022625 0.978397022507 1038 146 146;1038;1039;1252;1266;1962;1997;10575 17.27146 0.3687 -5.435685 22.707145 0.740175340513 1.0512850063 2668 15 15;2334;2668;2929;2944;3198;3972;9142 0.0 0.0 ENST00000285928.2 CDSintron coding exon(s) LRGUK alternative large final exon 1144 487454 chr11:20277101-20277139- NoOverlap chr11 20277101 20277139 - 5.08523849341 13 0.996168811733 -8.94314618294 14.0283846763 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;20277100;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A20277101-20277139-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A20277101-20277139&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00715648238277 0.822746359919 0.964680697271 20298647 20298685 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;20298646;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A20277101-20277139-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A20298647-20298685&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGWGLQAQQDGRRRWTHANYRPLWCPTP Same 489424 chr11:20277101-20277139- 1250 1250 -106 0 743 20274456 20277249 Best 1144 1144;16499;34687;35486;44462 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:20274456-20277249&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.589743589744 0.886363636364 -5.43613846154 0.9925 -13.4578461538 8.02170769231 -0.0136446718352 0.868402849344 49634 7832 7832;14487;49634;64437;70242 -11.1859307692 0.7776 -22.2042076923 11.0182769231 -0.0198944200088 0.730274448573 47988 8350 8350;41275;47988;61181;69341 0.0 0.0 not annotated putative regulatory region 1148 588826 chr9:35351527-35351604+ NoOverlap chr9 35351527 35351604 + 8.09109994998 26 0.851782077692 1.60048077657 6.49061917342 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35351526;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35351527-35351604%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35351527-35351604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.883577762555 0.821653205481 0.998731125995 35351524 35351601 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35351523;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35351527-35351604%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35351524-35351601&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MKRLLQESEEEIMVTLGPSSRLSPDK Same 589769 chr9:35351527-35351604+ 1056 1056 92 0 424 35341754 35353800 597 597;674;681;729;1148;1380;3195 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35341754-35353800&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.487179487179 0.216666666667 14.8673346154 0.9996 4.93218076923 9.93515384615 1.01551502949 1.02516974332 613 Best 613 613;676;680;821;951;1589;9444 15.3926923077 0.6164 0.886019230769 14.5066730769 0.851308083875 0.947377660897 2310 210 210;564;1088;1576;2310;2740;16707 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron not annotated potentially spurious 1149 463009 chr1:5554747-5554881+ NoOverlap chr1 5554747 5554881 + 6.81771336355 45 0.430994464366 -0.654793313032 7.47250667658 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;5554746;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A5554747-5554881%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A5554747-5554881&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.476655943337 0.82078470911 1.05507616141 5614807 5614941 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;5614806;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A5554747-5554881%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A5614807-5614941&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") *VLFIISEVFFFA*FF*AF*HSSLAPTPELGER*PPTGISPLNPFPWFFHLPETTTFPGSWPLLYLQSR Same 464873 chr1:5554747-5554881+ 1241 1241 -92 31 747 5554747 5554881 Best 1149 1149 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:5554747-5554881&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.414814814815 0.394736842105 -2.67539555556 0.1426 -3.54476888889 0.869373333333 -0.0130423129599 0.453182228889 49213 Best 49213 49213 27.8195955556 0.6823 6.39716888889 21.4224266667 1.04798323412 1.04235379721 360 Best 360 360 0.0 0.805633978684 chrM:9207-9990+ pseudogene MT-CO3 pseudogene (ENSG00000283356) 1153 503790 chr14:34963938-34964000- NoOverlap chr14 34963938 34964000 - 6.78606669392 21 0.879519849444 -3.87270484652 10.6587715404 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;34963937;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34963938-34964000-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A34963938-34964000&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.618707043394 0.819568476123 1.0352684803 35433144 35433206 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;35433143;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34963938-34964000-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A35433144-35433206&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") N*KETFRQLQEMVIKKYLLTDR Same 505633 chr14:34963938-34964000- 1083 1083 70 2 551 34954880 34969313 836 836;1153;1921;2166;5306;5436 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:34954880-34969313&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.380952380952 0.4375 9.92202857143 0.9773 -10.1912 20.1132285714 0.887743539932 0.948318129299 1336 816 816;1162;1336;1486;1625;4048 13.7143380952 0.7122 -17.412352381 31.1266904762 0.945733187365 1.0096934537 1847 390 390;1335;1542;1847;2704;3383 0.0 0.0 ENST00000554945.1,ENST00000556355.5 NC,NCintron pseudogene unitary pseudogene ENSG00000258704 1155 562899 chr4:149351990-149352067- NoOverlap chr4 149351990 149352067 - 3.73126543485 26 0.908135406213 -6.74190764244 10.4731730773 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;149351989;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149351990-149352067-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A149351990-149352067&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.256981484414 0.8185084339 1.02699515447 150273142 150273219 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;150273141;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149351990-149352067-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A150273142-150273219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CDCMFCIIVNGHPALKRANIRVVGKLVARSIRER Same 563895 chr4:149351990-149352067- 1147 1147 8 0 752 149351990 149352067 Best 1155 1155 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:149351990-149352067&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.487179487179 0.664772727273 6.79285769231 0.9931 -8.01036538462 14.8032230769 0.876064937564 1.03213281784 1378 Best 1378 1378 10.6962846154 0.5259 -9.91055769231 20.6068423077 0.860763567811 1.06517614983 2274 Best 2274 2274 0.0 0.0 ENST00000506683.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 1156 617510 chr11:4418964-4419008+ Extension chr11 4418964 4419008 + 8.3528068463 15 0.895002670329 -6.97564683155 15.3284536778 chr11:4418832-4419008+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;4418963;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A4418964-4419008%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A4418964-4419008&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.493419077616 0.818223636052 0.962423492032 4440194 4440238 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;4440193;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A4418964-4419008%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A4440194-4440238&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QSLLKHFQQKRIDAF Same 618218 chr11:4418964-4419008+ 1069 1069 87 0 753 4418964 4419008 Best 1156 1156 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:4418964-4419008&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488888888889 0.0 9.85578666667 0.9815 -9.59738 19.4531666667 0.724640370504 0.972113779584 1989 Best 1989 1989 -3.40299333333 0.728 -20.3929933333 16.99 0.210756960097 0.985637026817 5961 Best 5961 5961 0.0 0.158891871624 chr11:4681749-4682711- pseudogene extension OR51R1P extended to stop codon 1160 511143 chr16:29864731-29864790+ NoOverlap chr16 29864731 29864790 + 16.0209850788 20 0.89567254139 5.80139524341 10.2195898354 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;29864730;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A29864731-29864790%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A29864731-29864790&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.854311562302 0.816706258713 0.995437549245 29876052 29876111 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;29876051;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A29864731-29864790%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A29876052-29876111&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFLSQASLSRSEEYLSQISAELMEEALCTACCHLNPVPIK Same 512785 chr16:29864731-29864790+ 1078 1078 82 0 757 29864731 29864880 Best 1160 1160;2653 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:29864731-29864880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.535714285714 22.106635 0.9705 7.914885 14.19175 0.979912045982 1.02188213999 901 Best 901 901;2416 22.587325 0.3913 5.55205 17.035275 0.767764684095 0.952757189814 2584 Best 2584 2584;3953 0.0 0.0 ENST00000398859.3 NC pseudogene unitary pseudogene ENSG00000214725 1162 486464 chr11:124054811-124054867+ NoOverlap chr11 124054811 124054867 + 8.5818368071 19 0.776265796099 -8.74011073614 17.3219475432 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;124054810;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A124054811-124054867%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A124054811-124054867&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.643761151992 0.81609582161 0.97352137348 123925518 123925574 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;123925517;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A124054811-124054867%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A123925518-123925574&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NHTPVTEVPLMGIPHTKGMENVLFVLFLAFYLFTLLGNLLILLAVLTFSNLHTPMYFFLGNLSVFDIFFPSVSSPK Same 488426 chr11:124054811-124054867+ 987 987 175 0 759 124054811 124054867 Best 1162 1162 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:124054811-124054867&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.491228070175 0.0 19.4434473684 0.8333 -10.4995105263 29.9429578947 0.695309434756 1.02445851831 2110 Best 2110 2110 37.9163210526 0.8041 -21.6593526316 59.5756736842 0.949346407671 1.00942149171 1825 Best 1825 1825 0.0 0.269218363263 chr19:14799174-14800136- pseudogene extension OR10D5P extended 1164 583493 chr8:18849276-18849713+ NoOverlap chr8 18849276 18849713 + 4.61260613789 146 0.354360056479 -3.49165001767 8.10425615556 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;18849275;438;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A18849276-18849713%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A18849276-18849713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.480541201275 0.814812196473 1.10400273239 18706786 18707223 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;18706785;438;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A18849276-18849713%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A18706786-18707223&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPITDNYSFIDLPTPSIISI**NFGSLLGACLTL*IITVLFLAMHYASDTSTAFSSVAHISRDVNYG*MVRYFYANSTSIFFICLFLHVGRGLY*VSFTFLET*NIGIILLLTTMATAFIGYMLP*GQISFGGATVITNLLSAMPSIGSDLLQ*ISEVDSFLLLTDLVF Same 584420 chr8:18849276-18849713+ 714 714 450 113 761 18849276 18849713 Best 1164 1164 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:18849276-18849713&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.422374429224 0.492503748126 -3.06779041096 0.1312 -4.18604657534 1.11825616438 0.00621421222338 0.640981962427 38469 Best 38469 38469 39.8049554795 0.7103 3.81230068493 35.9926547945 0.995517028627 1.00717526054 1183 Best 1183 1183 0.0 0.789961867597 chrM:14747-15887+ ENST00000327040.12,ENST00000519851.5,ENST00000518303.5 AntiCDSintron,AntiUTR5intron,AntiNCintron pseudogene MT-CO2 pseudogene (ENSG00000283402) 1165 531026 chr19:37829169-37829255- NoOverlap chr19 37829169 37829255 - 5.0162378935 29 0.819677297996 -3.67582062812 8.69205852161 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37829168;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37829169-37829255-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37829169-37829255&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.565888484093 0.814709943708 1.05924816096 38319809 38319895 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38319808;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37829169-37829255-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38319809-38319895&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IRELPWEALDRLGLMNHHFAIPLAMGLMDSDENVQAK Same 532493 chr19:37829169-37829255- 1091 1091 74 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.51724137931 0.345238095238 15.8055896552 0.9394 -7.4881137931 23.2937034483 1.03313074965 0.973206645401 446 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 23.4363758621 0.4408 -8.06932413793 31.5057 1.00418125707 1.00643204442 1050 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.169478994106 chr19:37892578-37895456- 0.449047678758 chr19:37892578-37895456- ENST00000592640.5 NCintron pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 1167 571890 chr6:60504611-60504670+ NoOverlap chr6 60504611 60504670 + 9.07083998919 20 0.931492332341 -1.34933998287 10.4201799721 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;60504610;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60504611-60504670%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A60504611-60504670&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.754692231042 0.813981315569 1.04529007673 57472358 57472417 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;57472357;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60504611-60504670%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A57472358-57472417&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VNNLVCVLAYFLLSGCPFRHSDPELLKQKLQSYK Same 572915 chr6:60504611-60504670+ 1097 1097 70 0 162 60499345 60504670 194 194;1167 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:60499345-60504670&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.516666666667 0.25 17.221125 0.9266 1.95907 15.262055 0.896158945559 1.03390651755 1302 360 360;1302 40.132275 0.8931 4.51228 35.619995 1.00393482275 1.03118957324 1053 Best 1053 1053;1809 0.97209501325 chr6:57606375-57606457+ 0.979687362886 chr6:57606375-57606457+ redundant PhyloCSF signals are accounted for elsewhere on the list 1168 584695 chr8:78647394-78647492+ NoOverlap chr8 78647394 78647492 + 4.88459096081 33 0.478072091943 -11.4266363184 16.3112272792 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78647393;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78647394-78647492%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78647394-78647492&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.184976768748 0.813812479341 0.928331977309 79559629 79559727 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79559628;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78647394-78647492%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79559629-79559727&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FAFTIPTYNNQQPVERYQWTVLPQGMMNSPTICQLYVHEALLPVCQSFPQAK Same 585626 chr8:78647394-78647492+ 1020 1020 148 0 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.211538461538 -0.796266666667 0.0306 -2.97705757576 2.18079090909 0.0264599576816 0.570002698539 30060 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 20.3479969697 0.1686 -4.38685454545 24.7348515152 0.850714272588 1.05078164982 2313 Best 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 1169 505795 chr14:105624515-105624643- NoOverlap chr14 105624515 105624643 - 3.8018232351 43 0.472427479724 -6.30141858237 10.1032418175 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105624514;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105624515-105624643-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105624515-105624643&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.141595473722 0.813430527886 1.00488924494 106090852 106090980 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106090851;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105624515-105624643-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106090852-106090980&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTPPVLDSDGSFFLYSRLTVDKSRWQEGNVFSCSVMHEALHNHYTQK None NA NA 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.604651162791 0.514285714286 13.9387418605 0.7697 -9.22619069767 23.1649325581 1.09264113993 1.00159703204 21 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 14.9941627907 0.5442 -21.1180837209 36.1122465116 1.05240095903 0.820025028629 298 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.172147464373 chr22:23573266-23573585- ENST00000390543.3 NC immunoglobulin segment overlaps an immunoglobulin region 1170 500739 chr14:22462955-22463017+ NoOverlap chr14 22462955 22463017 + 12.0675522713 21 0.945483874484 4.5123285708 7.55522370055 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22462954;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22462955-22463017%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22462955-22463017&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.860956048686 0.813363441738 0.986420562907 22931947 22932009 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22931946;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22462955-22463017%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22931947-22932009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIIFAGSQPHTKPSVFVMKNGTNVACLVKEFYPK None NA NA 0 391 22462955 22464286 547 547;1170;3018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22462955-22464286&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.412698412698 0.75 17.2729095238 0.9827 5.45228571429 11.8206238095 0.971954657743 1.02947836734 953 485 485;953;1560 19.5572 0.428 3.36563333333 16.1915666667 0.783845148481 0.949663196939 2534 1794 1794;2374;2534 0.0 0.0 ENST00000390477.2,ENST00000611204.4,ENST00000556777.1,ENST00000514473.2 NC,NCintron,AntiNC,AntiNCintron immunoglobulin segment overlaps an immunoglobulin region 1171 479193 chr10:121951540-121951599+ NoOverlap chr10 121951540 121951599 + 10.425674969 20 0.7951216907 -5.60670989528 16.0323848642 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;121951539;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A121951540-121951599%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A121951540-121951599&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.782830880543 0.813222804244 0.968235224962 123711055 123711114 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;123711054;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A121951540-121951599%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A123711055-123711114&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NIYQAEQTRGLRDHKHRLLPQRIPSEILSPK Same 481098 chr10:121951540-121951599+ 1076 1076 95 0 763 121951540 121951927 Best 1171 1171;1532;3401;23742 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:121951540-121951927&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.516666666667 0.272727272727 16.331745 0.9173 -11.520305 27.85205 0.814787448787 1.0299884363 1612 1494 1494;1612;3896;22772 15.31507 0.3292 -15.35635 30.67142 0.688706840651 1.02216290323 2854 Best 2854 2854;2954;4862;25178 0.0 0.0 ENST00000437593.1 NC pseudogene unitary pseudogene ENSG00000226864 1173 503455 chr14:23104600-23104656- NoOverlap chr14 23104600 23104656 - 8.74002120369 19 0.944775993543 -2.5275579189 11.2675791226 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23104599;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23104600-23104656-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23104600-23104656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.693352862315 0.811885948874 1.03202264471 23573809 23573865 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23573808;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23104600-23104656-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23573809-23573865&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGSRALAAVREATQRIQAVLAGE Same 505294 chr14:23104600-23104656- 1118 1118 55 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.631578947368 0.529411764706 12.4184684211 0.9423 -3.04701578947 15.4654842105 0.830313869405 1.03146886915 1556 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 11.0016789474 0.4432 -4.60335789474 15.6050368421 0.570026530489 0.956130585244 3264 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 1175 470660 chr1:21951083-21951142- NoOverlap chr1 21951083 21951142 - 13.2632200554 20 0.85854352636 2.87131010816 10.3919099472 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;21951082;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A21951083-21951142-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A21951083-21951142&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.844618438141 0.81095364402 1.03242787036 22277576 22277635 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;22277575;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A21951083-21951142-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A22277576-22277635&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GINYLDQSTNAYNSCHKTLQSLPKLAANYLERAASSLNLDHQDHPLPQSYSSPSTSVTIPNNSTTSTCMVLSLR Same 472542 chr1:21951083-21951142- 1111 1111 64 0 224 21950738 21951365 280 280;598;1175;2010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:21950738-21951365&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.566666666667 0.0 21.75528 0.9592 5.17765 16.57763 0.970617465561 1.02257466382 962 293 293;962;1314;1435 18.751705 0.3424 -0.80239 19.554095 0.698606928831 1.01297184127 2814 1720 1720;2814;3146;3452 0.0 0.0 pseudogene unitary pseudogene ENSG00000283234 1178 569169 chr5:140573821-140573976- NoOverlap chr5 140573821 140573976 - 3.38751158462 52 0.882668098667 -4.30712111588 7.6946327005 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140573820;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140573821-140573976-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140573821-140573976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.473657013969 0.810515791845 1.0739329749 139953406 139953561 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139953405;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140573821-140573976-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139953406-139953561&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MQVKQVRPTLWDAVEEARARRAGLRPLRLGLLEDTLTDSGLSQLGRALRELEVSK Same 570182 chr5:140573821-140573976- 1084 1084 94 0 157 140570090 140575575 188 188;325;1178;1912;10102;11098 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140570090-140575575&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.660256410256 0.365339578454 5.31298076923 0.9961 -7.04237692308 12.3553576923 0.969957225721 1.05976389996 966 143 143;737;966;1745;2012;3638 12.1859057692 0.489 -7.94689038462 20.1327961538 1.04209580078 1.06235822321 445 94 94;445;458;3312;3430;3706 0.0 0.149599503712 chrX:153942855-153943079- ENST00000513766.2,ENST00000507279.5 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 1179 473849 chr1:120557034-120557159- NoOverlap chr1 120557034 120557159 - 5.30839523318 42 0.873363560729 -0.282992909352 5.59138814253 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;120557033;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120557034-120557159-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A120557034-120557159&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.811011493798 0.810438883522 1.01453533014 144930599 144930724 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;144930598;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120557034-120557159-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A144930599-144930724&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSLPGAKPGPSMTDGVSSGFLNRSLKPLYKTPVSYPLELSDLQELWDDLCEDYLPLR Different 475728 chr1:120557019-120557159- 556 556 623 0 332 120557034 120558959 455 455;1179;8132;9030 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:120557034-120558959&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.452380952381 0.156327543424 8.43763571429 0.9686 -1.56741190476 10.005047619 0.97801182524 1.06819562246 909 Best 909 909;960;17149;46807 9.14503333333 0.8623 -10.7887785714 19.9338119048 0.855611352342 1.07555993271 2295 1642 1642;2295;10626;64986 0.966213171796 chr1:148952781-148953905+ 1.03316685431 chr1:148952781-148953905+ ENST00000612480.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 1181 553201 chr3:120366477-120366563+ NoOverlap chr3 120366477 120366563 + 4.11509656752 29 0.924348400302 -5.34294474587 9.45804131339 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;120366476;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120366477-120366563%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A120366477-120366563&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.408962463711 0.80966600009 1.04951900223 120085324 120085410 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;120085323;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120366477-120366563%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A120085324-120085410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AHPFTDVTLSCHFSFVKGTENLEFSWEREDIK None NA NA 0 11 120366477 120368084 11 11;568;909;1181;1188;1356;8610 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:120366477-120368084&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.425287356322 0.0 2.4359862069 0.9477 -8.36318965517 10.7991758621 0.560366438036 1.08903910367 2767 1029 1029;1399;2108;2270;2767;2983;4768 8.6837 0.4962 -8.13836896552 16.8220689655 0.767022847436 1.0310428784 2585 683 683;1974;2462;2559;2585;3123;3204 0.0 0.0 ENST00000494869.1 NC pseudogene unitary pseudogene ENSG00000240661 1182 527307 chr19:12802147-12802203+ NoOverlap chr19 12802147 12802203 + 6.23497899896 19 0.778890347866 -7.0393789489 13.2743579479 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12802146;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12802147-12802203%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12802147-12802203&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.424276595368 0.809334947557 0.968716249464 12912961 12913017 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12912960;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12802147-12802203%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12912961-12913017&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPGALLLAPLLLLQLATPALVYQDYQYLGQQGEGDSWEQLR Same 528753 chr19:12802147-12802203+ 1072 1072 110 0 96 12775496 12806530 113 113;1182;3126;12882;12916;19147;21814;28171;30495;34266;70783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12775496-12806530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.59649122807 0.225296442688 12.4844631579 0.9495 -11.5830631579 24.0675263158 0.832432221617 0.970014709156 1545 845 845;1545;3224;5434;8474;11177;11868;16562;28502;47510;67609 7.29465263158 0.4559 -15.5584105263 22.8530631579 0.631662244617 1.07753566823 3058 40 40;3058;6466;7449;7608;8225;15095;31105;55016;67420;71961 0.0 0.0 ENST00000589765.1 AntiNCintron not annotated putative regulatory region 1184 595797 chrX:137860420-137860482+ NoOverlap chrX 137860420 137860482 + 4.93280471719 21 0.877262240824 -6.30020478794 11.2330095051 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;137860419;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A137860420-137860482%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A137860420-137860482&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.35224605595 0.808925618687 1.01596687678 136942579 136942641 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;136942578;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A137860420-137860482%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A136942579-136942641&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EQMMMMMVMMIMLIIIIIIIAAITK Same 596439 chrX:137860420-137860482+ 1123 1123 61 0 770 137860420 137860482 Best 1184 1184 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:137860420-137860482&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 1.01684285714 0.9368 -11.1030857143 12.1199285714 0.383174548386 1.08056212077 4223 Best 4223 4223 1.01684285714 0.2928 -11.1030857143 12.1199285714 0.199124696457 0.888520851484 6270 Best 6270 6270 0.0 0.0 not annotated putative regulatory region 1185 543321 chr20:36205945-36206034+ NoOverlap chr20 36205945 36206034 + 7.06500998239 30 0.819862668803 1.18477661014 5.88023337225 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;36205944;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36205945-36206034%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A36205945-36206034&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.869145402639 0.808851786228 0.986065237644 34793867 34793956 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;34793866;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36205945-36206034%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A34793867-34793956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QAGLAGILANGRLSKVDVLVDKFKVEVATEEMVGNR Same 544710 chr20:36205945-36206034+ 1099 1099 86 0 105 36205843 36208375 125 125;723;906;1185;1244;1425;3209;4167;4835;30161 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:36205843-36208375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.31746031746 9.89801 0.9643 3.25959666667 6.63841333333 0.829123394315 0.925105245024 1562 172 172;398;1291;1366;1423;1562;1733;1995;6918;10311 4.90524333333 0.6833 -9.65602 14.5612633333 0.604374458255 0.998040551075 3152 1508 1508;2023;2148;2169;2610;3152;3488;3607;4506;5668 0.0 0.0 ENST00000202028.9 CDSintron coding exon(s) EPB41L1 three consectutive cassette exons 1188 553206 chr3:120367974-120368024+ NoOverlap chr3 120367974 120368024 + 9.49022931912 17 0.906401159686 -4.28127056448 13.7714998836 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;120367973;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120367974-120368024%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A120367974-120368024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.654716388207 0.807576426602 0.987666753213 120086821 120086871 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;120086820;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120367974-120368024%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A120086821-120086871&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLSNHSIVEILEEQMNGFYRVFSILKYPVKLNEKYLCHITETDVNNQLFR Same 554155 chr3:120367974-120368024+ 1106 1106 82 0 11 120366477 120368084 11 11;568;909;1181;1188;1356;8610 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:120366477-120368084&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.392156862745 0.0 7.7385 0.9437 -8.97091176471 16.7094117647 0.657202892571 1.0102542331 2270 1029 1029;1399;2108;2270;2767;2983;4768 15.4651529412 0.4803 -11.8036117647 27.2687647059 0.776589511919 1.05717756939 2559 683 683;1974;2462;2559;2585;3123;3204 0.0 0.0 ENST00000494869.1 NC pseudogene unitary pseudogene ENSG00000240661 1189 497201 chr12:120219486-120219548- NoOverlap chr12 120219486 120219548 - 11.4648284657 21 0.801217088651 3.02680027414 8.43802819153 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;120219485;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A120219486-120219548-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A120219486-120219548&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.844072568906 0.807309431218 1.02583173351 120657289 120657351 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;120657288;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A120219486-120219548-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A120657289-120657351&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFQEVTEPAVVAVDRQAIFPDTWTLTEEHGLQQERPRPEPGR Same 499209 chr12:120219486-120219548- 1132 1132 57 0 288 120216252 120219548 378 378;1189;3047;10568;22491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:120216252-120219548&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.571428571429 0.195046439628 19.9044857143 0.9681 4.7171952381 15.1872904762 0.984642091645 1.03280386684 873 479 479;873;2418;4055;5885 26.585852381 0.6772 2.68403333333 23.9018190476 1.04318776463 1.04367962895 428 Best 428 428;560;1751;2468;3435 0.0 0.0441344661996 chr4:48490292-48491254+ ENST00000323871.9,ENST00000228307.11,ENST00000538144.5 NC,CDSintron,NCintron coding exon(s) PXN 2 cassette exons 1192 467696 chr1:160262408-160262503+ NoOverlap chr1 160262408 160262503 + 7.25990311615 32 0.839284351873 2.48721863976 4.7726844764 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;160262407;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160262408-160262503%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A160262408-160262503&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.932778356042 0.806703344774 0.912976139907 160232198 160232293 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;160232197;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160262408-160262503%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A160232198-160232293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSSPLPVLGHPSASGCSDCSRPSRPVHCHHQRRRHLTLASGRHHHRLRSLRLRLR Same 469562 chr1:160262408-160262503+ 1108 1108 84 0 695 160262310 160262658 1078 1078;1192;6610;14541;28188 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:160262310-160262658&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.739583333333 1.12941176471 0.85534375 0.9026 -6.42386875 7.2792125 0.305670425234 0.982074921711 5491 3400 3400;4685;5491;10173;13442 0.483728125 0.3126 -7.086025 7.569753125 0.17283554559 0.776778674817 7045 6373 6373;6638;7045;12631;15012 0.0 0.0 ENST00000442130.1,ENST00000326837.6,ENST00000461888.5,ENST00000485079.1 NC,AntiUTR5,AntiNC,AntiCDSintron not annotated putative regulatory region 1193 491116 chr12:40567655-40567714+ NoOverlap chr12 40567655 40567714 + 11.1341249928 20 0.883101396201 1.20633004904 9.92779494375 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40567654;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40567655-40567714%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40567655-40567714&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.824091238053 0.806536434295 1.04441905292 40961457 40961516 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40961456;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40567655-40567714%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40961457-40961516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DTGFAAVVQDCPKQTWCAEASHLN Same 493093 chr12:40567655-40567714+ 1105 1105 88 0 19 40565645 40570604 19 19;175;252;1193;1558 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40565645-40570604&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.55 0.222222222222 12.028745 0.9427 -2.44437 14.473115 0.83872208107 1.04281440483 1515 121 121;362;478;1515;1847 13.054505 0.3828 -4.14683 17.201335 0.618723668603 0.990508326135 3099 12 12;169;2094;3099;3273 0.0 0.0 ENST00000454784.8 NC known assembly issue MUC19 has a known sequence error; the CDS cannot yet be annotated 1194 530978 chr19:35792534-35792614- NoOverlap chr19 35792534 35792614 - 8.80804437399 27 0.750195682827 3.06751108721 5.74053328677 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35792533;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35792534-35792614-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35792534-35792614&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.881558109874 0.805851405641 0.954508765365 36283436 36283516 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36283435;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35792534-35792614-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36283436-36283516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSALTAAWMAAPPCLQAPSLVMVPLLQAGGDLQLHDQRGRTPQDWAEQGGAK Same 532445 chr19:35792534-35792614- 1128 1128 66 0 212 35784826 35806955 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.230113636364 9.52467777778 0.9038 1.12293703704 8.40174074074 0.756179895703 0.998536168951 1839 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 12.3066185185 0.5244 -0.693285185185 12.9999037037 0.736981558127 0.921868941519 2687 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.206662921805 chr17:58622847-58623012- ENST00000433059.1 NCintron pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 1195 531765 chr19:49019906-49020052- NoOverlap chr19 49019906 49020052 - 6.01659187005 49 0.655456579519 0.736177604113 5.28041426594 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49019905;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49019906-49020052-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49019906-49020052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.754872031926 0.805531078367 1.01095918957 49523163 49523309 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49523162;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49019906-49020052-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49523163-49523309&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDSHNWAFDEVLSRWETTSGSAYVPKTHGGPCAQPRAPEPADPTRTVGIKDLGEKVK Same 533240 chr19:49019906-49020052- 1185 1185 10 0 33 49017965 49020515 34 34;193;1195;1825;2425;7512;24256 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49017965-49020515&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.632653061224 0.54394079556 10.6371061224 0.9901 -0.706857142857 11.3439632653 1.05135015272 1.04736469249 246 18 18;246;307;1538;2029;2679;3404 9.19579795918 0.4394 -3.24025714286 12.436055102 0.77475084734 0.967264930902 2564 76 76;2096;2562;2564;4203;4229;5297 0.0 0.0866729745151 chr11:6600926-6601055- protein-coding gene protein-coding gene ENSG00000268655 1196 539822 chr2:110022446-110022661- NoOverlap chr2 110022446 110022661 - 5.93092641328 72 0.547359977281 1.46429719114 4.46662922214 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110022445;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110022446-110022661-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110022446-110022661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.758233771169 0.805516771732 0.985146654648 110780023 110780238 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110780022;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110022446-110022661-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110780023-110780238&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HIPTLDTPSPLSVPASAGAEFPLCVPPGSESYQGHSCPVGHYCPAGTRSPRPCPAGTFRSSSRARAAEDCRLCPADTFSALPGQVGCLTCQSAAFSPPGECQVCLLQMPCLGPAALR Same 541182 chr2:110022446-110022661- 1140 1140 56 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.680555555556 0.241791044776 9.67925277778 0.7958 0.232706944444 9.44654583333 1.00057326607 1.05935380821 733 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 19.5826041667 0.6468 -1.06703888889 20.6496430556 0.997227717287 1.0482575176 1149 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 1197 559060 chr4:56419829-56419951+ NoOverlap chr4 56419829 56419951 + 5.59482187542 41 0.76728056317 -0.130014615088 5.7248364905 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;56419828;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56419829-56419951%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A56419829-56419951&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.774229235716 0.805410298383 1.01820493592 57285995 57286117 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;57285994;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56419829-56419951%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A57285995-57286117&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DWKQCRTKYKNLKHEYKIVRTAQDLGMTKSMKFFTELDAILGPNK Same 560045 chr4:56419829-56419951+ 1127 1127 70 0 775 56410528 56419951 Best 1197 1197;2551;4102;21082 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:56410528-56419951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.357723577236 0.5125 5.56902439024 0.89 -3.49155609756 9.0605804878 0.759855729523 1.07342001989 1822 Best 1822 1822;5450;9723;11374 21.4058146341 0.8646 0.867014634146 20.5388 1.02511226599 1.04530747294 699 651 651;699;700;2092 0.0 0.0 ENST00000264220.6,ENST00000507724.1 AntiCDSintron,AntiNCintron pseudogene Transcribed unprocessed pseudogene. Myb/SANT-like DNA-binding domain containing (ENSG00000283156) 1198 483271 chr11:1109314-1109415+ NoOverlap chr11 1109314 1109415 + 6.16501175064 34 0.569497215229 -2.15260595697 8.31761770761 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1109313;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1109314-1109415%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1109314-1109415&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.484832139906 0.805335398722 1.0567016522 1103222 1103323 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1103221;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1109314-1109415%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1103222-1103323&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NNCTFFSCVKIHNQLISSVSNITCPNFDASICIPVSWPPGAWLCVLCR Same 485201 chr11:1109314-1109415+ 1236 1236 -38 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.529411764706 0.62962962963 15.3330735294 0.9453 -0.150332352941 15.4834058824 1.05158275116 1.00425821648 240 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 22.5917235294 0.7702 -7.33468823529 29.9264117647 1.04718707248 1.00797790188 370 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.116955976585 chr15:89750509-89751231- ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 1199 531042 chr19:37831750-37831812- NoOverlap chr19 37831750 37831812 - 4.94347624836 21 0.808817534796 -6.70029051673 11.6437667651 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37831749;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37831750-37831812-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37831750-37831812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.331352960789 0.803716903384 1.00316127189 38322390 38322452 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38322389;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37831750-37831812-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38322390-38322452&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MMDQWPPIQAMVHTGSYHMLIAYCGDMR Same 532509 chr19:37831750-37831812- 1104 1104 95 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.492063492063 0.276315789474 9.85284761905 0.9215 -12.3406904762 22.1935380952 0.830293076609 0.94320897043 1557 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 18.7181666667 0.4697 -11.3970714286 30.1152380952 0.894195237987 1.03187569883 2133 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.172771098278 chr19:37892578-37895456- 0.480715092617 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 1200 491697 chr12:53675817-53675870+ NoOverlap chr12 53675817 53675870 + 6.88351129161 18 0.965333197698 -4.92256114218 11.8060724338 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;53675816;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53675817-53675870%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A53675817-53675870&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.486941608853 0.803319549868 1.01543364299 54069601 54069654 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;54069600;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53675817-53675870%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A54069601-54069654&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LWPAPRYPPPARHPRWRQAR Same 493675 chr12:53675817-53675870+ 1218 1218 -18 0 511 53675817 53677539 760 760;1200;7057;16551;24062;35589 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:53675817-53677539&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.541806020067 8.29196111111 0.9422 -3.51237222222 11.8043333333 0.622279916111 1.04947601421 2429 Best 2429 2429;5561;6811;18771;39125;47754 8.84909444444 0.3298 -4.04267222222 12.8917666667 0.342587810045 0.879092764338 4274 Best 4274 4274;6621;14008;15709;25359;38314 0.0 0.0 ENST00000338662.5,ENST00000549164.5 AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 1201 503241 chr14:20435218-20435277- NoOverlap chr14 20435218 20435277 - 16.4027051322 20 0.844403753719 9.17319512367 7.22951000854 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;20435217;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20435218-20435277-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A20435218-20435277&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.850172336042 0.803092401568 0.867744726375 20903377 20903436 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;20903376;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20435218-20435277-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A20903377-20903436&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLGGGGPRPPFSLEVSPGGWEAVLTFAYEGVLGPASQGDVLAAAEALGAPRVKAAAQQTCER Same 505112 chr14:20435218-20435277- 1142 1142 59 0 178 20430676 20435763 215 215;783;1136;1201;3984;5029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:20430676-20435763&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.75 0.504201680672 17.65332 0.9732 9.010955 8.642365 0.909406818598 0.918369132347 1271 70 70;912;1148;1271;2133;9110 32.074905 0.5835 16.76527 15.309635 0.954238892983 0.878286867383 1777 412 412;1247;1258;1543;1777;8205 0.0 0.112329059562 chr17:38578490-38578791- ENST00000344581.4 UTR5intron coding exon(s) KLHL33 alternative first exon 1206 579088 chr7:114085900-114085935+ NoOverlap chr7 114085900 114085935 + 7.24875809749 12 0.847552198571 -11.3051496347 18.5539077322 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;114085899;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114085900-114085935%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A114085900-114085935&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.231698144289 0.802098833634 0.972208859085 113725955 113725990 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;113725954;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114085900-114085935%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A113725955-113725990&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RQPGGSAANPNNILPR Same 580132 chr7:114085900-114085935+ 1044 1044 162 0 780 114085900 114086223 Best 1206 1206;5370 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:114085900-114086223&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 1.0 9.15881666667 0.9442 -9.93479166667 19.0936083333 0.533429327285 0.981981146142 2912 Best 2912 2912;12207 9.17385 0.4592 -12.6583 21.83215 0.444956554642 1.0413830114 3753 Best 3753 3753;13467 0.0 0.0 not annotated putative regulatory region 1207 499780 chr13:51111144-51111203- NoOverlap chr13 51111144 51111203 - 8.52639000416 20 0.754073395895 -5.26810520887 13.794495213 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51111143;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51111144-51111203-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51111144-51111203&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.659676651734 0.801963884031 0.970212305281 51685280 51685339 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;51685279;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51111144-51111203-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A51685280-51685339&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSTMFRKIHSIFNSSPQRKTAAESPFYEGASPAVK Same 501787 chr13:51111144-51111203- 1136 1136 71 0 148 51110832 51111907 177 177;694;1207;6306 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51110832-51111907&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.566666666667 0.659340659341 12.638655 0.9684 -3.74424 16.382895 0.899814210748 1.01626938627 1293 453 453;1104;1293;4715 19.78968 0.8781 -5.68458 25.47426 0.925225282585 1.05676433187 1976 1636 1636;1803;1976;7599 0.0 0.0 ENST00000433280.6 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 1208 573461 chr6:167986865-167986927+ NoOverlap chr6 167986865 167986927 + 12.9652666031 21 0.711490406798 2.41279028356 10.5524763195 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;167986864;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167986865-167986927%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A167986865-167986927&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.824135357934 0.801877646063 1.03786842091 168387545 168387607 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;168387544;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167986865-167986927%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A168387545-168387607&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AKEDKIAELETENAVLLLKLAQVIFSHVLQAEWNR Same 574489 chr6:167986865-167986927+ 1210 1210 -2 0 327 167976938 168002143 446 446;1208;2908;3125;34549;35422;36527;37043;41869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:167976938-168002143&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.646153846154 15.5852047619 0.702 4.02124761905 11.5639571429 0.680520531872 1.03382608346 2159 1167 1167;2159;2163;3104;6372;25026;25456;26766;27130 16.4560142857 0.2792 4.03197142857 12.4240428571 0.495660876476 0.856978341641 3543 139 139;2661;3543;3691;4447;13096;13690;18631;40134 0.0 0.0 pseudo-exon KIF25 has 8 exons upstream that are coding as part of this locus in other mammals. At least two of these exons are clearly pseudogenic. This suggests the locus may be a pseudogene, although it has been maintained as coding due to published experimental support for its functionality. 1209 558293 chr4:3500310-3500402+ NoOverlap chr4 3500310 3500402 + 6.00264192397 31 0.528032053791 -4.51483559146 10.5174775154 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;3500309;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A3500310-3500402%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A3500310-3500402&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.352913104632 0.80164938084 1.00855122127 3502037 3502129 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;3502036;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A3500310-3500402%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A3502037-3502129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GESPTYVNIPVSPSSRKQLHYMGLELQEASEGVR Same 559269 chr4:3500310-3500402+ 1238 1238 -29 0 218 3500310 3505629 272 272;1209;38989;46929;51176 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:3500310-3505629&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.623655913978 0.450909090909 17.3332935484 0.8046 -5.75980967742 23.0931032258 0.992122779983 0.970731821144 813 442 442;813;28076;33984;34533 30.4966387097 0.6807 -7.07755806452 37.5741967742 1.04595422966 0.967969055695 393 Best 393 393;793;1580;2806;42450 0.0 0.0391491910293 chr16:4360278-4360363- ENST00000512714.1 NC coding exon(s) DOK7 3 3' coding exons 1212 581038 chr7:38249343-38249405- NoOverlap chr7 38249343 38249405 - 8.92430026474 21 0.788693064775 -1.54828097707 10.4725812418 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;38249342;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38249343-38249405-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A38249343-38249405&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.749474301447 0.800860363566 1.04326051019 38288944 38289006 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;38288943;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38249343-38249405-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A38288944-38289006&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SNTILGSQEGNTMKTNDTYMKFSWLTVPEESLDK None NA NA 0 578 38240099 38265655 880 880;946;1212;1353;2319;3451;3622;4048;8280;41779;49225 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:38240099-38265655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.460317460317 0.605769230769 15.2882952381 0.9355 3.09651428571 12.1917809524 0.887791441117 1.04260281447 1335 Best 1335 1335;1528;1788;1910;2091;2312;3177;3446;5221;5413;7771 18.2324095238 0.4071 -1.45528095238 19.6876904762 0.794558070152 1.02015409751 2500 Best 2500 2500;2518;2952;3009;3184;3667;3896;4112;4120;5226;6124 0.0 0.0 ENST00000436911.6,ENST00000610516.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 1213 530981 chr19:35796794-35796859- NoOverlap chr19 35796794 35796859 - 8.87090449983 22 0.757430796868 -0.913504459641 9.78440895948 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35796793;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35796794-35796859-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35796794-35796859&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.755147658072 0.800499089891 1.05080365461 36287696 36287761 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36287695;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35796794-35796859-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36287696-36287761&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLDTQVGRLHHLAVAGGPGWGPARLLR Same 532448 chr19:35796794-35796859- 1190 1190 23 0 212 35784826 35806955 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.772727272727 0.310344827586 10.9449318182 0.9459 -5.92465 16.8695818182 0.886941394557 0.998721905228 1338 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 9.00364545455 0.4154 -8.64628181818 17.6499272727 0.619001972347 1.02229546483 3098 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.0102071644767 chr12:56454254-56454613- ENST00000433059.1 NCintron pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 1214 476345 chr1:237943564-237943644- NoOverlap chr1 237943564 237943644 - 8.29612226177 27 0.523792488605 -4.52255556098 12.8186778227 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;237943563;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237943564-237943644-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A237943564-237943644&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.520075677894 0.800330186071 0.961380735344 238106864 238106944 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;238106863;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237943564-237943644-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A238106864-238106944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSTPLLNNMPIINLLLLIIPTLIAIAFLTLIERKILGYIQYAK Same 478239 chr1:237943564-237943644- 1225 1225 -11 0 236 237940783 237943644 302 302;662;735;826;878;1214;1221;3426 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:237940783-237943644&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.358024691358 1.17391304348 3.2182 0.1201 -2.43431851852 5.65251851852 0.0681929582553 0.855712879556 19960 15205 15205;16524;19960;20662;24160;29790;35876;52414 39.3348222222 0.7078 -0.16977037037 39.5045925926 1.04090718318 0.996737554182 468 316 316;468;540;604;1096;1312;1906;1926 0.0 0.887983290039 chrM:3307-4262+ pseudogene mitochondrially encoded NADH dehydrogenase 2 (MT-ND2) pseudogene (ENSG00000283166) 1215 463036 chr1:6455052-6455120+ NoOverlap chr1 6455052 6455120 + 7.03355667384 23 0.751101469178 -3.18395659149 10.2175132653 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;6455051;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6455052-6455120%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A6455052-6455120&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.627322103784 0.800176872205 1.04087903814 6515112 6515180 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;6515111;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6455052-6455120%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A6515112-6515180&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPPQSAGAPGREPILEEDYVAARSGQPSAAAAHGPLVDWEPLGTLGPPEVQDR Same 464900 chr1:6455052-6455120+ 1178 1178 37 0 194 6447414 6467425 235 235;370;505;560;639;1215;12903;51895 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:6447414-6467425&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.768115942029 0.793103448276 11.6241782609 0.7752 -7.68922173913 19.3134 0.819323772271 0.957787890766 1602 395 395;511;536;884;1170;1602;50220;68713 18.9576565217 0.6956 -13.4955130435 32.4531695652 1.02905184811 0.996978963919 638 Best 638 638;851;876;1267;1741;2000;23707;36104 0.0 0.297298148035 chr2:238130128-238131732+ ENST00000377828.5,ENST00000477679.1 CDSintron,NCintron coding exon(s) ESPN very large alternative final exon 1216 470095 chr1:9955834-9955902- NoOverlap chr1 9955834 9955902 - 6.62094789484 23 0.841669071621 -2.82310005893 9.44404795377 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;9955833;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A9955834-9955902-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A9955834-9955902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.657057085743 0.799733141651 1.05299553528 10015892 10015960 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;10015891;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A9955834-9955902-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A10015892-10015960&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INVSPSLLTFRPRSSQYCSQSLLYNLVSNTIFTFFTIGK Same 471977 chr1:9955834-9955902- 1139 1139 77 0 290 9951232 9960787 384 384;1216;1412;2730 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:9951232-9960787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.449275362319 0.0 9.83675217391 0.9578 -3.08954782609 12.9263 0.848633470054 1.05690188589 1472 1030 1030;1088;1472;1491 11.2407043478 0.4003 -5.45826956522 16.698973913 0.659280342336 0.999866309274 2964 2577 2577;2658;2964;3349 0.0 0.0 ENST00000377205.5,ENST00000462686.1 AntiUTR5intron,AntiNCintron pseudogene unitary pseudogene ENSG00000283611 1219 522793 chr17:64505437-64505595- NoOverlap chr17 64505437 64505595 - 7.05513205956 53 0.736768340697 3.71792638808 3.33720567148 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;64505436;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64505437-64505595-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A64505437-64505595&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.960281458316 0.799206780928 0.868968443328 62501555 62501713 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;62501554;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64505437-64505595-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A62501555-62501713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TWRRRLCYPARRRSSKWQRRENVAQREMRDKGGSAAPAGTPPGRLRPGRDSSPGSR Same 524227 chr17:64505437-64505595- 1173 1173 46 0 785 64497052 64506947 Best 1219 1219;1314;11116;12743;15272;20390;22680;57720;59551 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:64497052-64506947&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.704402515723 1.06609195402 1.13512641509 0.928 -0.329490566038 1.46461698113 0.179265205182 0.582701398934 9751 3317 3317;9751;12985;29872;53023;54218;61045;63372;66796 -4.61309056604 0.5359 -5.67739056604 1.0643 0.0406180146921 0.538190143185 20897 5759 5759;11482;17125;20897;41797;70711;70752;72223;73201 0.0 0.0 ENST00000583239.5,ENST00000225792.9,ENST00000581697.5,ENST00000540698.6 UTR5,CDSintron,UTR5intron,NCintron coding exon(s) DDX5 alternative first exon 1221 476341 chr1:237942235-237942345- NoOverlap chr1 237942235 237942345 - 4.26661890181 37 0.49951109269 -6.11998915189 10.3866080537 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;237942234;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237942235-237942345-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A237942235-237942345&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.176104128651 0.799190387123 1.00189579197 238105535 238105645 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;238105534;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237942235-237942345-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A238105535-238105645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INPCSTEAATKYFLTQATTSIILIIGILTNNLSSRQ*TIINTINQFSSLIIIMVLVIK Same 478235 chr1:237942235-237942345- 1251 1251 -30 2 236 237940783 237943644 302 302;662;735;826;878;1214;1221;3426 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:237940783-237943644&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.378378378378 0.0 0.372032432432 0.1205 -2.66122432432 3.03325675676 0.0272498304785 0.678725639636 29790 15205 15205;16524;19960;20662;24160;29790;35876;52414 33.6235297297 0.7141 1.06156756757 32.5619621622 1.00089956985 1.01380942898 1096 316 316;468;540;604;1096;1312;1906;1926 0.0 0.833215852516 chrM:4470-5511+ pseudogene mitochondrially encoded NADH dehydrogenase 2 (MT-ND2) pseudogene (ENSG00000283166) 1225 512650 chr16:85169504-85170364+ NoOverlap chr16 85169504 85170364 + 4.94236025284 287 0.330177480502 2.21315227259 2.72920798024 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;85169503;861;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85169504-85170364%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A85169504-85170364&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.591767398757 0.79744947847 0.849167125507 85203110 85203970 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;85203109;861;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85169504-85170364%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A85203110-85203970&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGPGGRRGAAMSGRPAPVSRKQRLMAAVGERAAGGAPLSCFICGGGIGRGKELKLQVKQPAAGAGTPAQPFFPFLQQQEPAPGARELSPADGCVLVCAVCRCFLGEQWAAFERARTPVDKRMYWLKRPHQCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGMK Same 514295 chr16:85169504-85170364+ 842 842 383 0 247 85169288 85171795 315 315;1225;4037;33765;48559;52041;63398 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:85169288-85171795&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.779326364692 0.985249155179 7.53642648084 0.6021 3.16957247387 4.36685400697 0.931894814631 0.853367651173 1182 686 686;1182;1519;35870;37426;44051;65700 9.37532961672 0.6506 -2.1360728223 11.511402439 0.832786302897 0.782612933883 2378 912 912;1310;2378;23905;34536;69575;73658 0.0 0.105508222585 chr17:56510473-56511269+ coding exon(s) GSE1 5' extension 1226 494060 chr12:2726421-2726495- NoOverlap chr12 2726421 2726495 - 8.23559190035 25 0.638519264515 -1.38315591455 9.61874781489 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2726420;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2726421-2726495-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2726421-2726495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.653513817366 0.796562220242 1.04954379002 2835587 2835661 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2835586;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2726421-2726495-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2835587-2835661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ANNHYSTDGCPGPSLCLR*VTLENQMSIHTLITLSCMAILFMMHSGAF Same 496054 chr12:2726421-2726495- 1242 1242 -16 10 179 2726421 2727050 216 216;432;1226;2632;8002 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2726421-2727050&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.573333333333 0.0 7.766124 0.4856 -0.400584 8.166708 0.295905382104 0.984810116601 5720 1901 1901;3324;5423;5720;8206 22.124732 0.4252 0.571836 21.552896 0.957848250037 1.04157270319 1730 333 333;1730;1907;2558;2603 0.0 0.0 pseudogene gap junction beta family pseudogene (ENSG00000283587) 1232 651338 chr16:71431928-71431981- Extension chr16 71431928 71431981 - 11.7022333162 18 0.915021659334 -2.04628320038 13.7485165166 chr16:71431865-71431981- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;71431927;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A71431928-71431981-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A71431928-71431981&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.759066006817 0.795398351345 1.0016889204 71465831 71465884 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;71465830;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A71431928-71431981-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A71465831-71465884&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVTCKLFPDERSLITGGASQAVTLWDLAPTPQVR Same 651964 chr16:71431928-71431981- 1133 1133 99 0 1 71430668 71432325 1 1;1232;1578;61319 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:71430668-71432325&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.375 19.9756666667 0.9706 3.81424444444 16.1614222222 0.952392964084 1.02179097342 1080 Best 1080 1080;1161;1704;2373 63.2505388889 0.9713 32.6718833333 30.5786555556 0.975895974814 0.939783782737 1500 1234 1234;1500;2160;2283 0.0 0.357290712461 chr19:3005721-3005968- ENST00000561754.1,ENST00000572770.2 NC,NCintron protein-coding gene protein-coding gene ENSG00000260734 1235 483254 chr11:1101810-1101929+ NoOverlap chr11 1101810 1101929 + 6.61537249982 40 0.604057373922 0.634092485905 5.98128001392 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1101809;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1101810-1101929%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1101810-1101929&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.68253187902 0.795100182055 1.02517672592 1095718 1095837 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1095717;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1101810-1101929%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1095718-1095837&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YNNTVEIVKVECEPPPMPTCSNGLQPVRVEDPDGCCWHWECDCESGAPRPSPHLLPSPWVGAAGPVSR Same 485184 chr11:1101810-1101929+ 1243 1243 -8 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.683333333333 0.856632956573 16.358255 0.8705 4.4466625 11.9115925 1.05773966053 1.0492611034 175 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 29.1733125 0.9096 -3.5393 32.7126125 1.00424363256 0.990194770068 1048 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0636125910319 chr11:1252809-1252980+ 0.279186218495 chr11:1193485-1193659+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 1236 484449 chr11:57038115-57038153+ NoOverlap chr11 57038115 57038153 + 8.94956161426 13 0.894805476815 -8.97499995507 17.9245615693 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57038114;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57038115-57038153%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57038115-57038153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.422381024238 0.794817938432 0.968550489263 56805590 56805628 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;56805589;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57038115-57038153%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A56805590-56805628&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TINHFFCDEPPIIALPCSNIDLNIMLLTVFVGLNLMCTVMVVIISCIYVLVAILR Same 486394 chr11:57038115-57038153+ 1153 1153 83 0 338 57037567 57038422 463 463;582;884;1044;1236;1826;3363;6311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57037567-57038422&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.25641025641 0.0 10.9469384615 0.9793 -8.10317692308 19.0501153846 0.687675880131 0.984630248751 2138 346 346;643;688;1159;1835;1855;2138;3085 23.8302230769 0.9468 -27.7485615385 51.5787846154 0.862425068036 0.923337452234 2263 792 792;938;1237;1246;1582;1841;2263;2401 0.107977366759 chr11:56988914-56989843+ 0.29018510882 chr9:122614738-122615682+ pseudogene OR5AK4P olfactory receptor family 5 subfamily AK member 4 pseudogene (ENSG00000283307) 1237 528874 chr19:47273356-47273457+ NoOverlap chr19 47273356 47273457 + 9.44646470687 34 0.763272431884 6.98615296711 2.46031173976 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;47273355;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A47273356-47273457%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A47273356-47273457&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02998217955 0.794603409521 0.672543053645 47776613 47776714 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;47776612;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A47273356-47273457%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A47776613-47776714&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WEDCSPPLTQPLLSSEAGPEGQETAEITDFQRVRFCKVVAAPPLPGAAR Same 530333 chr19:47273356-47273457+ 1191 1191 46 0 796 47273356 47273457 Best 1237 1237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:47273356-47273457&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.725490196078 0.753880266075 10.1217941176 0.9429 7.69129117647 2.43050294118 0.689984871223 0.621754385137 2127 Best 2127 2127 6.25649705882 0.4324 5.18857352941 1.06792352941 0.203824788549 0.510327898913 6134 Best 6134 6134 0.0 0.0601866693196 chr11:64343507-64343615+ coding exon(s) CCDC9 alternative final coding exon 1242 561220 chr4:17875513-17875581- NoOverlap chr4 17875513 17875581 - 11.1447001385 23 0.945998321508 6.78874364495 4.35595649351 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17875512;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17875513-17875581-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17875513-17875581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.90614823111 0.793179082568 0.774296790295 17877136 17877204 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17877135;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17875513-17875581-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17877136-17877204&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGIYKKSITVTVIYGRSRRTKRHVSEGR Same 562211 chr4:17875513-17875581- 1194 1194 48 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.616071428571 14.7551913043 1.0 8.28267391304 6.4725173913 0.913675379312 0.844177573256 1254 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 38.1568956522 0.8751 19.8283086957 18.3285869565 1.05027343428 0.949552577811 322 Best 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 1244 543325 chr20:36207271-36207336+ NoOverlap chr20 36207271 36207336 + 8.86556833915 22 0.854322811544 0.851095416329 8.01447292282 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;36207270;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36207271-36207336%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A36207271-36207336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.814630256484 0.792414925986 1.0378544761 34795193 34795258 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;34795192;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36207271-36207336%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A34795193-34795258&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQVGFVVSPATGGERRPPPITSRKPRVVPEEAEGR Same 544714 chr20:36207271-36207336+ 1163 1163 81 0 105 36205843 36208375 125 125;723;906;1185;1244;1425;3209;4167;4835;30161 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:36205843-36208375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.621212121212 0.157142857143 10.67005 0.9909 -2.91494090909 13.5849909091 0.901417583401 1.05122289581 1291 172 172;398;1291;1366;1423;1562;1733;1995;6918;10311 6.24378181818 0.4483 -7.75528636364 13.9990681818 0.480188767001 0.945147187356 3607 1508 1508;2023;2148;2169;2610;3152;3488;3607;4506;5668 0.0 0.094580774562 chr11:75587059-75588184- ENST00000202028.9 CDSintron coding exon(s) EPB41L1 three consectutive cassette exons 1245 512400 chr16:73890867-73890893+ NoOverlap chr16 73890867 73890893 + 7.99998895327 9 0.884421386367 -14.1260222859 22.1260112392 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;73890866;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73890867-73890893%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A73890867-73890893&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.109380479967 0.792056271661 1.01761764219 73924766 73924792 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;73924765;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73890867-73890893%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A73924766-73924792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NQHHHHHHHHHHNK Same 514044 chr16:73890867-73890893+ 1258 1258 -13 0 802 73871387 73890893 Best 1245 1245;5929;26802;45887 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:73871387-73890893&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.0 3.44848888889 0.9466 -11.0198777778 14.4683666667 0.166500640963 1.03960507803 10495 Best 10495 10495;22286;51299;68737 1.33046666667 0.5047 -19.0372333333 20.3677 0.201971940087 1.01945097212 6191 Best 6191 6191;30661;47708;50590 0.0 0.0 not annotated putative regulatory region 1246 594049 chr9:136263703-136263756- NoOverlap chr9 136263703 136263756 - 4.86245003674 18 0.742483660131 -9.4858944921 14.3483445288 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136263702;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136263703-136263756-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136263703-136263756&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.17631057938 0.791852695062 0.939363411354 139155549 139155602 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139155548;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136263703-136263756-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139155549-139155602&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HRDRKLLLQHQRDVVSMPGPVDILPIPGPTDVVPAHELQAQAK Same 595005 chr9:136263703-136263756- 1046 1046 200 0 518 136245441 136267514 774 774;1246;1671;1737;14484;26677;40966;49975;52795 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136245441-136267514&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.648148148148 0.72 15.9022777778 0.8555 -15.0992666667 31.0015444444 0.651356605428 1.08301806178 2295 109 109;1226;1522;2295;2801;2860;36147;58996;63557 17.5684166667 0.4528 -16.7618888889 34.3303055556 0.774347960858 0.986400575782 2567 1329 1329;2089;2472;2567;3628;6432;23671;29069;54815 0.0 0.141265350042 chr1:180062220-180062366+ not annotated putative regulatory region 1248 505815 chr14:105707957-105708079- NoOverlap chr14 105707957 105708079 - 6.78708776832 41 0.43497442253 -1.09311704892 7.88020481723 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105707956;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105707957-105708079-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105707957-105708079&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.429092211991 0.79179323245 1.05431389625 106174294 106174416 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106174293;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105707957-105708079-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106174294-106174416&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YVLTSSGHLSTPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGK None NA NA 0 543 105704391 105719646 823 823;838;1248;1547;1711;2216;9225;18253;35962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105704391-105719646&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.626016260163 0.697872340426 15.827902439 0.9134 -5.10387804878 20.9317804878 1.06854286572 0.946294757217 94 Best 94 94;95;219;285;641;1432;1674;1887;5574 13.8055731707 0.4828 -13.0000365854 26.8056097561 1.10025692455 1.01950754796 51 Best 51 51;686;1709;1746;1937;2386;2922;3268;6181 0.0 0.0978991975312 chr16:75234889-75235986- ENST00000390547.3,ENST00000618756.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 1250 478055 chr10:89786837-89787004+ NoOverlap chr10 89786837 89787004 + 5.3664285499 56 0.371027477139 -3.11676432964 8.48319287954 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;89786836;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A89786837-89787004%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A89786837-89787004&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.328223235202 0.791311670516 1.03613421297 91546594 91546761 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;91546593;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A89786837-89787004%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A91546594-91546761&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIFQIFTYFPHHNILVTANNLFQFFIG**GIGIMSFLLIT*WYG*ADANTAALQAVLHNHIRDIGFILAIAWFLLSSNT Same 479949 chr10:89786837-89787004+ 1322 1322 -72 32 729 89786640 89787109 1123 1123;1250;58078 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:89786640-89787109&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.412776412776 -1.64990357143 0.0306 -2.2488125 0.598908928571 0.00052627398201 0.451335181644 41255 24953 24953;41255;49582 36.8969071429 0.6905 2.19269107143 34.7042160714 0.922828847484 0.9865044743 1993 1620 1620;1993;3578 0.0 0.827496195111 chrM:12337-14148+ pseudogene NADH dehydrogenase subunit 5 pseudogene (ENSG00000283402) 1252 469209 chr1:225277425-225277481+ NoOverlap chr1 225277425 225277481 + 13.8962210417 19 0.898965197383 1.62984738852 12.2663736532 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;225277424;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A225277425-225277481%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A225277425-225277481&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.817757118003 0.790253792229 1.02639186529 225465127 225465183 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;225465126;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A225277425-225277481%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A225465127-225465183&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSHSMVFFKEAIEHIIRATRVLRQPGSHMLLVGI Same 471089 chr1:225277425-225277481+ 1164 1164 88 0 120 225275914 225277481 144 144;1252 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:225275914-225277481&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.421052631579 0.395833333333 23.8860263158 0.954 4.29498947368 19.5910368421 0.953206595022 1.00835714189 1073 106 106;1073 31.9839421053 0.5542 6.63545789474 25.3484842105 0.965346908 1.0376426204 1629 1031 1031;1629 0.0 0.0 ENST00000327794.10,ENST00000430092.5 NC,CDSintron coding exon(s) DNAH14 two cassette exons 1254 521542 chr17:42040821-42040880- NoOverlap chr17 42040821 42040880 - 9.61701001301 20 0.778590066377 -2.35187498108 11.9688849941 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;42040820;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42040821-42040880-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A42040821-42040880&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.742115639871 0.789995463736 1.01787813988 40192839 40192898 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;40192838;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42040821-42040880-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A40192839-40192898&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGSVGPQLRATCPLLAELHCLPGRTDPEPPAYLGQYESILDALFR Same 522962 chr17:42040821-42040880- 1224 1224 30 0 202 42039741 42043379 246 246;490;677;1042;1254;1300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:42039741-42043379&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.65 0.326086956522 17.302625 0.9422 3.39949 13.903135 0.911993080424 1.03981823834 1261 211 211;393;721;1090;1261;1575 33.028235 0.6544 2.38153 30.646705 1.03290861759 1.04846847449 585 256 256;463;585;758;813;1544 0.0 0.0 ENST00000587304.1,ENST00000436535.3 NC,CDSintron protein-coding gene protein-coding gene ENSG00000267221 1255 534740 chr2:110347105-110347179+ NoOverlap chr2 110347105 110347179 + 9.57899205863 25 0.604332341497 0.95316393137 8.62582812726 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110347104;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110347105-110347179%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110347105-110347179&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.710283262054 0.789831819862 1.05284226737 111104682 111104756 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111104681;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110347105-110347179%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111104682-111104756&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPGPVSSGAVAEVPCRPGSYCGPQTGLPPLCPGGLCLPCQLLHLQWPGAAVSSFPLPPQGSEPQPQPWNCCQHPM Same 536092 chr2:110347105-110347179+ 1267 1267 -12 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.298408488064 16.188892 0.7384 2.412404 13.776488 0.843170363111 1.04788459773 1496 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 22.636612 0.638 0.966728 21.669884 1.04575176627 1.04159696508 394 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 1256 559723 chr4:108483644-108483670+ NoOverlap chr4 108483644 108483670 + 9.88055562145 9 0.965975772064 -11.9748113867 21.8553670082 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;108483643;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A108483644-108483670%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A108483644-108483670&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.21672588563 0.789639321382 0.99060488216 109404800 109404826 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;109404799;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A108483644-108483670%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A109404800-109404826&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISYQSFSPSPVLFVCFR Same 560712 chr4:108483644-108483670+ 1486 1486 -230 0 807 108483644 108483670 Best 1256 1256 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:108483644-108483670&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.675 7.07162222222 0.9989 -15.5730111111 22.6446333333 0.414645653195 0.948256718181 3847 Best 3847 3847 -10.1996333333 0.5119 -24.8536888889 14.6540555556 -0.0103239542529 0.827067661024 41126 Best 41126 41126 0.0 0.0 not annotated putative regulatory region 1257 479444 chr10:128539775-128539816+ NoOverlap chr10 128539775 128539816 + 6.78482141239 14 0.899628333824 -7.47135005678 14.2561714692 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;128539774;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A128539775-128539816%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A128539775-128539816&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.302518242014 0.789323427035 0.969236418551 130338039 130338080 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;130338038;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A128539775-128539816%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A130338039-130338080&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDFVKDDTQTSYYHIQSYQEK Same 481349 chr10:128539775-128539816+ 1176 1176 81 0 808 128537129 128539816 Best 1257 1257;1501 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:128537129-128539816&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.380952380952 0.666666666667 4.21401428571 0.9724 -9.79471428571 14.0087285714 0.404529166741 1.05292617334 3954 Best 3954 3954;8359 2.6025 0.6947 -14.6106928571 17.2131928571 0.353776135674 0.987947819363 4210 Best 4210 4210;12994 0.0 0.0 not annotated putative regulatory region 1260 581613 chr7:81560743-81560862- NoOverlap chr7 81560743 81560862 - 2.81398253627 40 0.847819104295 -5.88147246726 8.69545500353 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;81560742;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81560743-81560862-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A81560743-81560862&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.240309198087 0.788777392293 1.06571040331 81190059 81190178 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;81190058;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81560743-81560862-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A81190059-81190178&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INELNPIGSASAFTFSVFENSPVDTLVGKVTFTDADWPFNNMEYTIVGGNLGTPPKFYIEPDTGIVK Same 582572 chr7:81560743-81560862- 1184 1184 76 0 592 81560120 81607572 904 904;925;973;1260;1465;2153;3581;4237;4691;5577 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:81560120-81607572&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.358333333333 0.25974025974 -0.7834125 0.9627 -11.612875 10.8294625 0.507866757976 1.10643149705 3088 1152 1152;1609;1628;2206;2439;2771;3071;3088;3130;3532 -0.1584725 0.6451 -18.6559825 18.49751 0.669862702862 1.10238142371 2931 2526 2526;2821;2931;3052;3114;3116;3529;3585;4138;5392 0.0 0.0 ENST00000412900.2 NC pseudogene unitary pseudogene ENSG00000233491 1261 514963 chr16:73792837-73792923- NoOverlap chr16 73792837 73792923 - 5.92422422047 29 0.886974320118 -1.24653447291 7.17075869338 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;73792836;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73792837-73792923-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A73792837-73792923&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.741328773112 0.788734815345 1.04366449984 73826736 73826822 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;73826735;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73792837-73792923-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A73826736-73826822&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEHSGNVQGDLLSVTNVNPKPYRSCYICFGFVHSREGRGGVHCMVKGQTTCHISLPSLATTEGCLQR Same 516613 chr16:73792837-73792923- 1203 1203 58 0 811 73792837 73792923 Best 1261 1261 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:73792837-73792923&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.540229885057 0.0 3.72569310345 0.9698 -6.03285862069 9.75855172414 0.607521200772 1.06844652829 2506 Best 2506 2506 -0.556031034483 0.5547 -8.88903448276 8.33300344828 0.246655941463 0.792675198581 5260 Best 5260 5260 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 1262 572520 chr6:109264823-109264954+ NoOverlap chr6 109264823 109264954 + 5.50149097361 44 0.858623774943 0.688825071535 4.81266590208 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109264822;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109264823-109264954%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109264823-109264954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.845904640532 0.788638455733 0.970402474969 109586026 109586157 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109586025;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109264823-109264954%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109586026-109586157&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELAWEMGFEEFHLYLRPVHFEFASHGDRADQPPPVFITSLLEDSGRVDR Same 573547 chr6:109264823-109264954+ 1179 1179 83 0 198 109254451 109270128 241 241;379;398;784;1262;1279;1591;1821;4627;6101 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109254451-109270128&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.507575757576 0.239564428312 3.66389772727 0.99 -4.56960227273 8.2335 0.709393020704 1.06497502285 2049 103 103;138;267;470;609;712;856;2049;2971;3012 12.4615636364 0.7606 -7.22730454545 19.6888681818 0.961800105648 1.06153999975 1677 235 235;262;499;654;818;864;1043;1677;1862;2261 0.0 0.0 ENST00000453496.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 1263 733673 chrX:149929879-149930070+ Extension chrX 149929879 149930070 + 3.06614224007 64 0.51569056611 -4.46647191024 7.53261415032 chrX:149929879-149930082+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;149929878;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149929879-149930070%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A149929879-149930070&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.192237508629 0.787689280334 1.07526775686 149098097 149098288 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;149098096;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149929879-149930070%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A149098097-149098288&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVNVEDNHNLFRLSFPRKLWTIVEEDTFKSVSWNDDGDAVIIDKDLFQREVLQRKGAERIFKTDNLTSFIRQLNLYGFCK Same 734273 chrX:149929879-149930070+ 1268 1268 -5 0 812 149929879 149931078 Best 1263 1263;7942 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:149929879-149931078&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.484375 0.720450281426 10.8860453125 0.7189 -7.3102890625 18.196334375 1.07719156292 0.913986351709 59 Best 59 59;2746 28.883753125 0.562 -12.4744921875 41.3582453125 0.917582914352 0.933301013566 2025 Best 2025 2025;3728 0.0882441229503 chrX:149594137-149594700- 0.444458704206 chrX:149594137-149594700- ENST00000457775.1,ENST00000462691.5 NC,AntiUTR3 protein-coding gene protein coding gene ENSG00000283463 1264 499771 chr13:51084157-51084216- NoOverlap chr13 51084157 51084216 - 12.404440105 20 0.908506904707 5.02072489187 7.38371521309 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51084156;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51084157-51084216-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51084157-51084216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.839660573124 0.787232543153 0.963053881467 51658293 51658352 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;51658292;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51084157-51084216-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A51658293-51658352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPKGQWLLRERLWERTVP Same 501778 chr13:51084157-51084216- 1165 1165 99 0 114 51084157 51088078 136 136;145;366;1264;1713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51084157-51088078&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.566666666667 0.681818181818 17.31059 0.9757 2.53095 14.77964 0.965298045079 1.03709291945 1000 291 291;534;600;1000;1249 13.91118 0.3768 -2.015365 15.926545 0.604447850117 0.958789310378 3151 408 408;1257;1688;3102;3151 0.0 0.0 ENST00000433280.6 NC protein-coding gene protein-coding gene ENSG00000226792 1266 464268 chr1:29070466-29070606+ NoOverlap chr1 29070466 29070606 + 4.19024684328 47 0.955490407107 -2.65627019837 6.84651704164 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;29070465;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A29070466-29070606%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A29070466-29070606&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.625499873815 0.786822795564 1.06698426622 29396978 29397118 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;29396977;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A29070466-29070606%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A29396978-29397118&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALPQQENEEILPKVSIPIPEDHKSLKKCHLYFSTFPSPRIPFMMSFLVILVLAVWWLVFL Same 466125 chr1:29070466-29070606+ 1275 1275 -9 0 485 29069160 29070606 715 715;1266;27704 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:29069160-29070606&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.439716312057 0.304864864865 3.81878723404 0.9975 -5.43974680851 9.25853404255 0.787790465614 1.09129031644 1714 1659 1659;1714;17473 13.0479255319 0.6839 -8.47970638298 21.5276319149 1.01957899715 1.06059095401 791 Best 791 791;1123;5276 0.0 0.0 ENST00000343067.8,ENST00000488277.1 CDSintron,NCintron coding exon(s) EPB41 alternative final exon 1267 519743 chr17:1229472-1229657- NoOverlap chr17 1229472 1229657 - 4.34307903148 62 0.676057610191 -1.54784840898 5.89092744046 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;1229471;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1229472-1229657-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A1229472-1229657&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.572227746215 0.78680965184 1.05189050847 1132766 1132951 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;1132765;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1229472-1229657-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A1132766-1132951&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRVGADGARGMWDPRAFERRWRAEFPGAEAPVPRLESVRDAERELERRRLNLERLQQVLAEEQLK Same 521150 chr17:1229472-1229657- 1228 1228 39 0 164 1228806 1229657 196 196;470;1267 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:1228806-1229657&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.763440860215 1.05681818182 10.5554983871 0.8116 -1.12963870968 11.6851370968 1.04493294047 1.03477685077 310 Best 310 310;537;1365 12.9689564516 0.6701 -8.86237096774 21.8313274194 1.00396333932 1.05952734804 1052 Best 1052 1052;1879;3592 0.0 0.0806198451157 chr4:154489304-154491355- redundant PhyloCSF signals are accounted for elsewhere on the list 1270 589037 chr9:61352022-61352123+ NoOverlap chr9 61352022 61352123 + 8.9727882103 34 0.431372997814 1.07844409106 7.89434411925 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61352021;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61352022-61352123%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61352022-61352123&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.538852169536 0.786468485974 1.05534758268 40610141 40610040 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;40610140;-100;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61352022-61352123%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A40610141-40610040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NIFIYIFGLLFLPSCNLSVNHITVFFPAADCDAPLASALPRSSFSSSSELSSSHGPGFSRLNRRDGESAFFLVLLLGDSHWIFI Same 589977 chr9:61352022-61352123+ 1379 1379 -109 0 816 61352022 61352123 Best 1270 1270 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61352022-61352123&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.588235294118 0.346153846154 9.73610294118 0.4114 1.36572352941 8.37037941176 0.43677210582 1.0220655027 3639 Best 3639 3639 26.5747970588 0.6525 3.98505 22.5897470588 1.08480127669 1.04933952093 105 Best 105 105 0.999920515482 chr9:42104629-42104739- 0.999478962331 chr9:39266896-39267006- known assembly issue protein similar to contactin associated protein-like 3 has a known sequence assembly problem; the CDS cannot yet be annotated 1273 468536 chr1:202826222-202826284+ NoOverlap chr1 202826222 202826284 + 7.7184428005 21 0.852991676567 -1.96042857284 9.67887137334 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;202826221;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A202826222-202826284%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A202826222-202826284&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.702444469296 0.784793143541 1.0521122148 202795350 202795412 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;202795349;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A202826222-202826284%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A202795350-202795412&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GMGYHVSCVRLVVKAGQAGGLMIRHIYLWEK Same 470408 chr1:202826222-202826284+ 1204 1204 69 0 315 202825246 202828148 422 422;1273;1512;62190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:202825246-202828148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.587301587302 0.0 13.630252381 0.92 0.419419047619 13.2108333333 0.852729537159 1.05023905784 1457 959 959;1457;2051;22050 54.046247619 0.9684 2.36641428571 51.6798333333 0.976748448707 0.998098887738 1481 1340 1340;1481;1898;14788 0.0 0.331156384651 chr12:85979289-85980430- ENST00000330493.6 NC pseudogene unitary pseudogene ENSG00000184774 1274 495283 chr12:51814156-51814308- NoOverlap chr12 51814156 51814308 - 5.64710001618 51 0.575090095548 -0.0468470349031 5.69394705109 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;51814155;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51814156-51814308-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A51814156-51814308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.607800505238 0.78445963873 1.03385331113 52207940 52208092 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52207939;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51814156-51814308-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52207940-52208092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAVPAPDWDALQLIVERLPQPLYERSPMGWAGPLALGLLTGFVGALGTGALVVLLTLWITGGDGDR Same 497281 chr12:51814156-51814308- 1299 1299 -25 0 145 51807534 51814833 173 173;1274;1566;23248;41728 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:51807534-51814833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.732026143791 0.782858970259 7.65101176471 0.7812 -1.49756470588 9.14857647059 0.879886925791 1.06871422802 1358 290 290;1358;1512;2640;66049 9.10758039216 0.4442 -7.85696862745 16.9645490196 0.913676022275 1.05339650977 2037 69 69;2037;2228;5219;35256 0.0 0.0517478822117 chr11:67423375-67424601+ protein-coding gene protein-coding gene ENSG00000284730 1278 534745 chr2:110348796-110348951+ NoOverlap chr2 110348796 110348951 + 6.17599812551 52 0.547910687771 0.892619251059 5.28337887445 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110348795;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110348796-110348951%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110348796-110348951&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.656722394589 0.783813863383 1.01556311951 111106373 111106528 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111106372;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110348796-110348951%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111106373-111106528&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPRPCPAGTFRSSSRARAAEDCRLCPADTFSALPGQMGCLTCQSAAFSPPGECQVCLLQMPCLGPAALR Same 536097 chr2:110348796-110348951+ 1301 1301 -23 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.291153415454 7.21097307692 0.7654 0.819417307692 6.39155576923 0.726719110717 0.992038384607 1980 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 23.0341153846 0.6863 6.0077 17.0264153846 1.05165049918 1.01504220674 305 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 1279 572522 chr6:109270051-109270128+ NoOverlap chr6 109270051 109270128 + 7.81697687736 26 0.807904173342 1.51718834788 6.29978852948 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109270050;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109270051-109270128%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109270051-109270128&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.839237592765 0.782874570888 0.989048330479 109591254 109591331 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109591253;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109270051-109270128%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109591254-109591331&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLHSGVENMQVTLACQAAQKNALMAAVQQVYFYCTPQGSCPANVK Same 573549 chr6:109270051-109270128+ 1200 1200 79 0 198 109254451 109270128 241 241;379;398;784;1262;1279;1591;1821;4627;6101 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109254451-109270128&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.211956521739 14.7718192308 1.0 2.55874615385 12.2130730769 1.03112054327 1.05446734285 470 103 103;138;267;470;609;712;856;2049;2971;3012 24.1267846154 0.6943 2.64068076923 21.4861038462 1.05530467441 1.03913714075 262 235 235;262;499;654;818;864;1043;1677;1862;2261 0.0 0.0 ENST00000453496.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 1288 534691 chr2:109971397-109971519+ NoOverlap chr2 109971397 109971519 + 6.89964390907 41 0.427405203326 -0.848434120417 7.74807802949 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;109971396;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109971397-109971519%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A109971397-109971519&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.429074057669 0.781228710472 1.05506963782 110728974 110729096 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110728973;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109971397-109971519%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110728974-110729096&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NVLFHITLYLSWVGEHPSTVLGQCNTDISGLCLSQLTLIDLIICGSLEAINIHSIRWSRALRPVFLINFPESRQVSI Same 536043 chr2:109971397-109971519+ 1412 1412 -124 0 674 109963466 109974092 1038 1038;1288;1607;3960;4614;5824;6691;9138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:109963466-109974092&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.479674796748 0.425115207373 11.6346414634 0.5394 -0.892026829268 12.5266682927 0.886083043546 1.03813984401 1343 Best 1343 1343;1741;2554;2750;2805;2859;2974;4366 39.528404878 0.7417 2.08487804878 37.4435268293 0.986695925614 0.982601108907 1320 119 119;225;546;552;1151;1223;1320;1375 0.0 0.0 ENST00000454928.5 NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000186148) 1290 491559 chr12:52275866-52275919+ NoOverlap chr12 52275866 52275919 + 10.0718001028 18 0.812893873503 -7.14858889745 17.2203890002 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52275865;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52275866-52275919%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52275866-52275919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.701830062252 0.780464587359 0.974345710164 52669650 52669703 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52669649;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52275866-52275919%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52669650-52669703&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HTQSLKPSKEDLNRLNQAIQWLTVEVGSAESQVR Same 493537 chr12:52275866-52275919+ 1158 1158 132 0 489 52264108 52277736 722 722;766;1062;1070;1290;2405;17351 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52264108-52277736&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.241071428571 9.65686111111 0.9651 -9.60525 19.2621111111 0.788106906667 0.96611973567 1712 546 546;672;709;783;1453;1608;1712 18.06725 0.4815 -16.2971333333 34.3643833333 0.814403026766 0.988229811046 2431 783 783;839;1030;1208;1231;1471;2431 0.0 0.200010326763 chr12:52362854-52362979- ENST00000423955.6,ENST00000553310.6,ENST00000549788.1 UTR5,UTR5intron,AntiNCintron pseudogene keratin family pseudogene (ENSG00000284883) 1295 569624 chr5:157689958-157690125- NoOverlap chr5 157689958 157690125 - 7.13870354316 56 0.464829589423 2.52447497685 4.61422856631 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;157689957;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A157689958-157690125-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A157689958-157690125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.697082494042 0.779890640175 0.982434958832 157116966 157117133 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;157116965;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A157689958-157690125-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A157116966-157117133&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSGSLWTLHTASPGARIQFQEAPPSELIRLTKVPLTPVPIKMQSLLEPSVKIETKDVPSLCCPQMQVLDSR Same 570642 chr5:157689958-157690125- 1354 1354 -59 0 835 157689958 157690896 Best 1295 1295;1973;10238;34106 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:157689958-157690896&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.529761904762 0.177777777778 19.117525 0.9454 6.79951428571 12.3180107143 0.974049889305 1.02100645482 938 Best 938 938;1196;2643;2918 28.5305589286 0.5551 7.44400892857 21.08655 1.0448560597 1.03649599181 405 Best 405 405;2510;4099;5825 0.976190605213 chr5:157651112-157652078- 0.992088079168 chr5:157651112-157652078- ENST00000522076.1 NC pseudogene SRY-box 30 (SOX30) pseuodgene (ENSG00000253798) 1296 483802 chr11:18599926-18599991+ NoOverlap chr11 18599926 18599991 + 9.55608632348 22 0.908598458839 2.9368455708 6.61924075268 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;18599925;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A18599926-18599991%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A18599926-18599991&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.849366414617 0.779029512327 0.972786903596 18621473 18621538 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;18621472;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A18599926-18599991%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A18621473-18621538&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIMIVLGWMFFVGLVCYMGTFPELMVSNGSACK None NA NA 0 836 18599926 18603819 Best 1296 1296;1382;3460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:18599926-18603819&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.439393939394 0.366666666667 16.3585409091 0.9985 7.89248636364 8.46605454545 0.962208841837 0.939022055112 1021 Best 1021 1021;1404;2578 18.9033590909 0.3839 8.86475 10.0386090909 0.617624724911 0.77508360198 3106 Best 3106 3106;3497;4486 0.0 0.0 ENST00000501599.2 NC protein-coding gene protein coding gene ENSG00000247595 1299 562900 chr4:149433391-149433453- NoOverlap chr4 149433391 149433453 - 8.66566657452 21 0.859567588384 -0.127823704765 8.79349027929 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;149433390;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149433391-149433453-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A149433391-149433453&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.770826499375 0.778752185807 1.04994105473 150354543 150354605 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;150354542;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149433391-149433453-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A150354543-150354605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AIEMLFTLYPPEGAHVPDSTLLKSTWLRPIVNGEEGYRYIGK Same 563896 chr4:149433391-149433453- 1215 1215 84 0 624 149433391 149433516 957 957;1299 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:149433391-149433516&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.396825396825 0.5 16.3795333333 0.9991 -3.43171904762 19.811252381 1.01043215643 0.975369048203 652 Best 652 652;1595 19.2061190476 0.529 -8.51438571429 27.7205047619 0.952758423151 1.05104659162 1795 Best 1795 1795;2287 0.0 0.0 ENST00000506683.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 1300 521543 chr17:42040914-42041186- NoOverlap chr17 42040914 42041186 - 6.00664285382 91 0.788977955744 3.67582749518 2.33081535864 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;42040913;273;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42040914-42041186-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A42040914-42041186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.958716463164 0.778601608317 0.786031664188 40192932 40193204 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;40192931;273;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A42040914-42041186-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A40192932-40193204&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSLTQSSLPFFPWLSQVAIASVLHTEACQRLKASPYVGLVLDETRDWPESHSLALFATSVSPCDGQPATTFLGSVELQEGEATAGQLLDILQAFGVSAPKLAWLSSSLPSER Same 522963 chr17:42040914-42041186- 1180 1180 120 0 202 42039741 42043379 246 246;490;677;1042;1254;1300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:42039741-42043379&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6336996337 0.256097560976 6.65674395604 0.9488 2.83224285714 3.8245010989 0.826189684675 0.831996532951 1575 211 211;393;721;1090;1261;1575 19.3563615385 0.6707 3.81865274725 15.5377087912 1.01754839136 0.994542856177 813 256 256;463;585;758;813;1544 0.0 0.00070601381689 chr7:73434008-73435783+ ENST00000587304.1,ENST00000436535.3 NC,CDSintron protein-coding gene protein-coding gene ENSG00000267221 1301 510473 chr16:3004217-3004609+ NoOverlap chr16 3004217 3004609 + 5.97284049899 131 0.454146697441 2.98540079423 2.98743970476 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3004216;393;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3004217-3004609%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3004217-3004609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.730715220064 0.778451027801 0.846301315258 3054218 3054610 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3054217;393;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3004217-3004609%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3054218-3054610&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YQVTAGGALWGPGLAAATGVAAAAKLAARLPRSSSHPRLARARAHSRLGRARSTLPPTPLPPPSLPHPPLPGLPPGLSPGPPTPSALALAELPPLPALPLRPEPLAPWGPGAHLALPELPPEACSPALSAAVLALQDLPRLPAPARSAR Same 512115 chr16:3004217-3004609+ 1181 1181 120 0 839 3004217 3004832 Best 1301 1301;3185 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3004217-3004832&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.82951653944 1.03235820896 9.0119129771 0.4889 3.6529221374 5.35899083969 0.900052874793 0.906088616288 1292 Best 1292 1292;1725 6.95969465649 0.4375 0.844222137405 6.11547251908 0.562444077635 0.769259976516 3294 Best 3294 3294;5156 0.0 0.226586648649 chr8:28716060-28718207+ ENST00000570515.1 AntiNCintron not annotated putative regulatory region 1303 528024 chr19:32826680-32826736+ NoOverlap chr19 32826680 32826736 + 14.5770159403 19 0.899703252179 5.83457375357 8.74244218673 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;32826679;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A32826680-32826736%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A32826680-32826736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.820867511389 0.7782053843 0.970692859831 33317586 33317642 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;33317585;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A32826680-32826736%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A33317586-33317642&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSWDALSGWSLPCVCHIHALTVSCSLEQNPNVAFDFDHWEDCEEDSHFPK Same 529471 chr19:32826680-32826736+ 1205 1205 98 0 214 32826242 32826736 264 264;574;1303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:32826242-32826736&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.491228070175 0.296875 20.4657473684 1.0 5.97136842105 14.4943789474 1.00778326767 1.02590598918 665 251 251;551;665 22.4379157895 0.6611 1.63917368421 20.7987421053 0.974528709422 1.01608652339 1517 149 149;1517;1770 0.0 0.0 ENST00000564769.2 NC coding exon(s) TDRD12 alternative final coding exons 1306 535527 chr2:158795248-158795286+ NoOverlap chr2 158795248 158795286 + 5.32715392113 13 0.870846464895 -9.19208467924 14.5192386004 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;158795247;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A158795248-158795286%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A158795248-158795286&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0692379498153 0.776878076487 0.956396148973 159651760 159651798 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;159651759;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A158795248-158795286%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A159651760-159651798&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QALLLLSNALKGPCPLPL Same 536886 chr2:158795248-158795286+ 1183 1183 123 0 843 158795248 158795286 Best 1306 1306 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:158795248-158795286&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.0 -1.93610769231 0.956 -19.6482846154 17.7121769231 0.229357335326 1.0334290145 7646 Best 7646 7646 -1.77374615385 0.3994 -19.7082538462 17.9345076923 0.175928954199 0.997596722891 6945 Best 6945 6945 0.0 0.0 not annotated putative regulatory region 1309 485933 chr11:111455806-111455871+ NoOverlap chr11 111455806 111455871 + 10.0447228835 22 0.793376890905 3.32409993627 6.72062294727 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111455805;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111455806-111455871%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111455806-111455871&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.836585413585 0.77556777677 0.974576963053 111326531 111326596 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111326530;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111455806-111455871%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111326531-111326596&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVPQLDTVLGHLSQVVLQEGHRLKAWGILGTGTGAELLRPGELCLGLSQGPPGNLALNQGN Same 487891 chr11:111455806-111455871+ 1231 1231 78 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.712121212121 0.366666666667 15.0630318182 0.943 4.72030909091 10.3427227273 0.893930330496 1.016044298 1311 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 26.1853363636 0.6725 5.47075 20.7145863636 1.03683314747 1.01601230003 526 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0443799243985 chr22:50548167-50549951+ ENST00000528953.1,ENST00000527555.1 NC,NCintron pseudogene unitary pseudogene ENSG00000255093 1310 539233 chr2:73080697-73080762- NoOverlap chr2 73080697 73080762 - 13.2711727782 22 0.863616943063 10.1103592231 3.16081355512 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;73080696;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73080697-73080762-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A73080697-73080762&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.902693836812 0.774976108086 0.60693215112 73307825 73307890 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;73307824;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73080697-73080762-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A73307825-73307890&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GENQLCPDVETADDAWPWDVVTISPAAETASLVFR Same 540611 chr2:73080697-73080762- 1274 1274 36 0 311 73071669 73081530 418 418;1129;1310;1891;4235;7622;14465;18194;23824;54581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:73071669-73081530&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575757575758 0.366666666667 27.1374772727 0.9952 16.7888 10.3486772727 1.00044225874 0.908696513615 734 166 166;734;1495;1711;1973;3802;9955;14922;47668;73713 26.5125181818 0.4006 14.9793 11.5332181818 0.773104306405 0.801508906746 2572 2300 2300;2572;2797;3173;3182;4993;30735;31537;41635;57875 0.0 0.0381033500874 chr9:137430784-137430843+ ENST00000258098.6,ENST00000482554.5 CDSintron,NCintron coding exon(s) RAB11FIP5 2kb cassette exon 1311 591036 chr9:135615365-135615454+ NoOverlap chr9 135615365 135615454 + 7.11453667084 30 0.56720785331 -1.24732347329 8.36186014414 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;135615364;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A135615365-135615454%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A135615365-135615454&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.532307707368 0.774831380694 1.05656815183 138507211 138507300 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;138507210;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A135615365-135615454%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A138507211-138507300&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PASPDPAHTPACGGSATQPGASWPPLPRPTPLQVEGRWLTLQLAANHADLVSPADPLRLALHSIR Same 591990 chr9:135615365-135615454+ 1369 1369 -58 0 846 135614297 135617015 Best 1311 1311;7491;10481;14963 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:135614297-135617015&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.711111111111 0.46875 11.1767866667 0.693 -3.64887 14.8256566667 0.896059920182 1.01791687999 1303 Best 1303 1303;1990;3552;3873 8.17594333333 0.37 -8.91481666667 17.09076 0.70019749493 1.03993098168 2809 Best 2809 2809;3460;7027;8972 0.0 0.147459914439 chr1:204261306-204261508- ENST00000430816.1 NC protein-coding gene protein coding gene ENSG00000236543 1314 522799 chr17:64506921-64506947- NoOverlap chr17 64506921 64506947 - 7.29419981109 9 0.884526504073 -11.6014779674 18.8956777785 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;64506920;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64506921-64506947-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A64506921-64506947&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0530944329859 0.774467274471 0.964439511256 62503039 62503065 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;62503038;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64506921-64506947-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A62503039-62503065&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELLAADWSSEEHFLSQDVK Same 524233 chr17:64506921-64506947- 1219 1219 95 0 785 64497052 64506947 1219 1219;1314;11116;12743;15272;20390;22680;57720;59551 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:64497052-64506947&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.964285714286 -1.0041 0.9708 -20.1756888889 19.1715888889 0.131270679941 1.00337787242 12985 3317 3317;9751;12985;29872;53023;54218;61045;63372;66796 -1.25627777778 0.387 -21.1289 19.8726222222 0.10025376236 1.00967187969 11482 5759 5759;11482;17125;20897;41797;70711;70752;72223;73201 0.0 0.0 ENST00000585111.1,ENST00000583699.1,ENST00000556440.6,ENST00000579860.5 UTR5,NC,AntiUTR5,AntiNC coding exon(s) DDX5 alternative first exon 1316 591986 chr9:61104490-61104579- NoOverlap chr9 61104490 61104579 - 6.49678007265 30 0.556482795453 -2.72938332558 9.22616339823 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61104489;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61104490-61104579-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61104490-61104579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.441597944721 0.774349420224 1.04741549553 43853585 43853496 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;43853584;-88;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61104490-61104579-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A43853585-43853496&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CKPLDTDSTSGDIFSGSFGWCSPTALYEQSCEAHKHRGNPSGLYYIDADGSGPLGPFLVYCNMTGMLIIVR Same 592937 chr9:61104490-61104579- 1376 1376 -60 0 412 61096906 61113907 579 579;1316;6725;6965;20633;21300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61096906-61113907&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.432692307692 10.8533666667 0.4129 0.376073333333 10.4772933333 0.462168468575 1.05550699603 3401 Best 3401 3401;4265;9880;14496;15960;37173 41.1440433333 0.8165 6.16569 34.9783533333 0.997832010194 1.02494096984 1145 634 634;935;978;1145;1930;2566 1.12255946215 chr9:41960773-41960892- 0.812233889969 chr9:41960773-41960892- redundant PhyloCSF signals are accounted for elsewhere on the list 1317 491102 chr12:40440572-40440622+ NoOverlap chr12 40440572 40440622 + 7.46434138239 17 0.836301213092 -5.70789426215 13.1722356445 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40440571;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40440572-40440622%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40440572-40440622&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.508038353619 0.77421209639 0.986857410719 40834374 40834424 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40834373;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40440572-40440622%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40834374-40834424&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NCFISSVCRDGILLCQIPIDLTLR Same 493079 chr12:40440572-40440622+ 1221 1221 96 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.450980392157 0.772727272727 3.92837647059 0.9811 -18.4993117647 22.4276882353 0.603587440197 0.930827729522 2529 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 -1.38414117647 0.4401 -27.7194705882 26.3353294118 0.434724882285 1.09476542927 3809 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 1318 469146 chr1:221741882-221741914+ NoOverlap chr1 221741882 221741914 + 6.20989080993 11 0.799821053289 -17.13321805 23.3431088599 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;221741881;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A221741882-221741914%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A221741882-221741914&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0601192906687 0.773669180978 1.07724752424 221915224 221915256 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;221915223;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A221741882-221741914%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A221915224-221915256&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YTHTNTHTHTHTSTALQSSTSSPGLSGVVAVTSTYFINK Same 471025 chr1:221741882-221741914+ 1049 1049 269 0 850 221741882 221742912 Best 1318 1318;6749;37227 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:221741882-221742912&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.484848484848 0.0 -3.15799090909 0.8714 -28.7371636364 25.5791727273 0.217932687481 0.939917343714 8066 7919 7919;8066;48743 -9.51863636364 0.419 -35.1177454545 25.5991090909 0.1413472256 1.04911453782 8463 8028 8028;8463;49102 0.0 0.0 ENST00000366899.3,ENST00000477026.5 AntiUTR5intron,AntiNCintron not annotated putative regulatory region 1320 482364 chr10:117543523-117543615- NoOverlap chr10 117543523 117543615 - 7.42434845168 31 0.925214057005 3.43291281981 3.99143563187 ENST00000442245.5,ENST00000553456.4,ENST00000616794.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117543522;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117543523-117543615-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117543523-117543615&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.940994666561 0.773058013477 0.82931575107 119303034 119303126 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119303033;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117543523-117543615-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119303034-119303126&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLEAMTQISVAVDEPGVEGGRIPLLRGE*GVWRVRGG*GVGGQGVRRRHRVHWHGGVGR Same 484291 chr10:117543523-117543615- 1270 1270 50 18 852 117534530 117554766 Best 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.763440860215 1.09411764706 -6.02199354839 0.9518 -5.40806774194 -0.613925806452 -0.096932627069 0.278087601148 73660 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -21.7619580645 0.96 -33.0538677419 11.2919096774 -0.0152663493362 0.684298811785 44513 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000551288.5,ENST00000442245.5 NCintron,AntiCDS not annotated putative regulatory region 1321 530977 chr19:35792377-35792436- NoOverlap chr19 35792377 35792436 - 8.40672495961 20 0.724762340734 -5.11694490314 13.5236698627 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35792376;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35792377-35792436-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35792377-35792436&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.622384084709 0.772728625027 0.974526771907 36283279 36283338 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36283278;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35792377-35792436-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36283279-36283338&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALLQLLELLQLCRAHISAFVHDGELPPMASLDQLQAR Same 532444 chr19:35792377-35792436- 1259 1259 62 0 212 35784826 35806955 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.789473684211 14.45774 0.8998 -1.85699 16.31473 0.840136755452 1.02048751156 1509 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 15.697225 0.3976 -2.283325 17.98055 0.695941601633 0.996368946929 2824 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.103237077708 chr1:155260330-155260450- ENST00000433059.1 NC pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 1325 530380 chr19:17391198-17391353- NoOverlap chr19 17391198 17391353 - 7.36154423539 52 0.587812443145 3.53140002203 3.83014421337 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;17391197;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A17391198-17391353-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A17391198-17391353&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.860334532938 0.770973749035 0.913815334361 17502007 17502162 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;17502006;156;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A17391198-17391353-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A17502007-17502162&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPAPPEALARWEAAATESTRRLDEALRRAGVAEAEGEACAAREAALRERL*VRGWPEGGVGWTGR Same 531843 chr19:17391198-17391353- 1296 1296 29 3 95 17390521 17394161 112 112;295;427;572;1325 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:17390521-17394161&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.794871794872 1.0187755102 10.9079634615 0.8684 2.36272884615 8.54523461538 1.00465954479 1.04325076084 696 208 208;465;468;696;802 10.209825 0.3993 1.04672692308 9.16309807692 0.66965609871 0.872077880689 2932 577 577;1818;2051;2874;2932 0.0 0.0 protein-coding gene protein-coding gene ENSG00000269720 1326 529182 chr19:51703020-51703094+ NoOverlap chr19 51703020 51703094 + 8.20521593153 25 0.628374456397 -0.818955976963 9.0241719085 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51703019;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51703020-51703094%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51703020-51703094&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.635863131474 0.77047845558 1.05485812908 52206273 52206347 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52206272;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51703020-51703094%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52206273-52206347&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STGLQEFARRFLCSGCYSRVCDLPLDCPGEGAGPR Same 530641 chr19:51703020-51703094+ 1366 1366 -40 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.721153846154 15.08736 0.9667 -0.32082 15.40818 1.00467937955 1.02744146305 695 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 14.713168 0.4378 -3.804408 18.517576 0.842214317154 1.02651827433 2343 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.0 ENST00000572565.5 NC protein-coding gene protein-coding gene ENSG00000182310 1328 548074 chr22:21467445-21467642+ NoOverlap chr22 21467445 21467642 + 7.32803628074 66 0.423713676014 3.44899998515 3.87903629559 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21467444;198;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21467445-21467642%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21467445-21467642&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.743610212428 0.770069045752 0.942759361312 21821734 21821931 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21821733;198;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21467445-21467642%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21821734-21821931&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLGSVSTAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSERERRCAGNAPLPGGR Same 549494 chr22:21467445-21467642+ 1390 1390 -62 0 857 21467445 21469818 Best 1328 1328;2227;3023;6657;7795;18550;21659 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21467445-21469818&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.671717171717 0.864827586207 8.65495151515 0.8108 -0.449922727273 9.10487424242 0.960486574666 1.06277754507 1035 Best 1035 1035;1287;1331;1719;1904;4183;5351 9.00502878788 0.4186 -5.35248939394 14.3575181818 0.808321935958 1.01429499572 2446 Best 2446 2446;2467;2733;2842;3549;4935;9390 0.514163043008 chr22:18527981-18528276+ 0.673971164687 chr22:18527981-18528276+ ENST00000456153.5 NC protein-coding gene protein coding gene ENSG00000206140 1330 554919 chr3:14555892-14555954- NoOverlap chr3 14555892 14555954 - 12.9004951205 21 0.663149098809 4.72212375417 8.17837136629 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;14555891;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A14555892-14555954-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A14555892-14555954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.790989280769 0.769249668008 0.999822938629 14597399 14597461 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;14597398;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A14555892-14555954-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A14597399-14597461&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGQAAQGSAGGQEGTMLAVSLKWRLGVVRRRLKGAGESGWR Same 555871 chr3:14555892-14555954- 1311 1311 19 0 859 14555892 14555954 Best 1330 1330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:14555892-14555954&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.964285714286 18.3218095238 0.8397 1.5801 16.7417095238 0.826151318956 1.01915077702 1576 Best 1576 1576 16.4432 0.3187 -0.297738095238 16.7409380952 0.627216710721 0.973183457404 3072 Best 3072 3072 0.0 0.0 coding exon(s) GRIP2 alternative first coding exon 1334 565520 chr5:137305082-137305231+ NoOverlap chr5 137305082 137305231 + 5.38404400833 50 0.349273823148 -4.88070796251 10.2647519708 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;137305081;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A137305082-137305231%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A137305082-137305231&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.250842996614 0.767998057547 0.971951656555 136640771 136640920 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;136640770;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A137305082-137305231%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A136640771-136640920&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLPCPFLASTINLPIASITLIIPILLTTLEFAVALIQAYVFTLLVNSLLT*HIMTHQTHAYPMISI Same 566512 chr5:137305082-137305231+ 1467 1467 -133 14 863 137305082 137305231 Best 1334 1334 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:137305082-137305231&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.38 0.249169435216 -2.585024 0.135 -4.270338 1.685314 -0.0150907011479 0.534044230033 50652 Best 50652 50652 0.535478 0.1826 -5.088714 5.624192 0.066311002722 0.743547180301 15744 Best 15744 15744 0.0 0.0 ENST00000394945.5,ENST00000510405.5,ENST00000503916.1 AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 1335 531041 chr19:37831711-37831743- NoOverlap chr19 37831711 37831743 - 4.81285465847 11 0.809903105211 -12.0074272156 16.820281874 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37831710;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37831711-37831743-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37831711-37831743&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.100626103143 0.767971530238 0.93439350931 38322351 38322383 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38322350;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37831711-37831743-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38322351-38322383&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LRLFGDHRRTFR Same 532508 chr19:37831711-37831743- 1067 1067 268 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.515151515152 1.375 4.49388181818 0.9222 -18.8961454545 23.3900272727 0.335465609566 0.939533951443 4920 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 17.5409363636 0.4742 -17.7026545455 35.2435909091 0.598753330057 1.00720207761 3168 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.17263995561 chr19:37892578-37895456- 0.490643578925 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 1336 558373 chr4:6228024-6228137+ NoOverlap chr4 6228024 6228137 + 5.34997890495 38 0.494929587645 -3.24275261281 8.59273151776 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;6228023;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6228024-6228137%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A6228024-6228137&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.312800456201 0.76769738174 1.05201806581 6229751 6229864 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;6229750;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6228024-6228137%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A6229751-6229864&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YMIFLNEQRSQLRATHPDLPFTEIMKMLAVQWAQLSQDKK Same 559349 chr4:6228024-6228137+ 1427 1427 -91 0 864 6228024 6228137 Best 1336 1336 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:6228024-6228137&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.14039408867 5.07822631579 0.58 -4.98409473684 10.0623210526 0.529233304262 1.08619263437 2940 Best 2940 2940 7.6799 0.3703 -7.40751842105 15.0874184211 0.718949106175 1.02011477859 2747 Best 2747 2747 0.0 0.0 ENST00000508601.1 NC pseudogene High-mobility group family pseudogene (ENSG00000249896) 1341 485926 chr11:111451338-111451409+ NoOverlap chr11 111451338 111451409 + 7.55934588611 24 0.621614404517 -3.24303744733 10.8023833334 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111451337;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111451338-111451409%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111451338-111451409&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.53770530673 0.765197446138 1.025582576 111322063 111322134 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111322062;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111451338-111451409%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111322063-111322134&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALAEESQLYEQSLSLFLQQFQKPGIYVFRLSSNRHRKMVCLR Same 487884 chr11:111451338-111451409+ 1380 1380 -39 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.891640866873 13.1013083333 0.9682 -7.1468125 20.2481208333 0.98613532556 0.953340978147 863 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 20.3764791667 0.6776 -11.9998791667 32.3763583333 1.04464529228 0.999937291423 409 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000528953.1,ENST00000525890.1 NC,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 1343 566047 chr5:148243009-148243110+ NoOverlap chr5 148243009 148243110 + 3.69613834339 34 0.636185424044 -5.53334110099 9.22947944438 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;148243008;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A148243009-148243110%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A148243009-148243110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.206935794376 0.764634703413 1.05123811331 147622572 147622673 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;147622571;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A148243009-148243110%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A147622572-147622673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNLGSSSLQGHLGLSSHQGKPESSGQQGKPGSSSQQGNLGTSGQQEKPGSSSQQGKPGLSSHQGKPGSSSQQGNLHLSSQQGNQGPSSK Same 567042 chr5:148243009-148243110+ 1384 1384 -41 0 870 148243009 148243425 Best 1343 1343;1796;7927 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:148243009-148243425&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539215686275 0.0 1.81081470588 0.8518 -11.4865911765 13.2974058824 0.655623487265 1.08588056376 2276 Best 2276 2276;2647;5297 0.0802147058824 0.726 -21.4727705882 21.5529852941 0.677352016014 1.11798775543 2893 2601 2601;2893;4151 0.0 0.183370348199 chr1:36097569-36099487- protein-coding gene protein coding gene ENSG00000248109 1346 476951 chr10:23173311-23173397+ NoOverlap chr10 23173311 23173397 + 7.93559304805 29 0.783614967522 3.30936554806 4.62622749998 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;23173310;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23173311-23173397%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A23173311-23173397&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.895801084916 0.763061659926 0.878086298005 23462240 23462326 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;23462239;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23173311-23173397%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A23462240-23462326&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPSRPLAAQVATFPWSGRAAACRIQRGRPGRALPRPDDR Same 478846 chr10:23173311-23173397+ 1277 1277 69 0 873 23173215 23174753 Best 1346 1346;12304;15950;27589;28990;57664;61491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:23173215-23174753&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.712643678161 1.18181818182 -1.62902413793 0.9252 -5.42807241379 3.79904827586 0.0310749947562 0.687246478844 28278 13233 13233;19886;24016;28278;48646;49514;73112 -5.76554137931 0.5359 -8.71685862069 2.95131724138 0.0121302792822 0.551837960807 29885 17548 17548;26780;29885;33897;60100;60114;62222 0.0 0.146716404152 chr20:59191020-59194757+ not annotated putative regulatory region 1347 559231 chr4:76639614-76639640+ NoOverlap chr4 76639614 76639640 + 8.14046679272 9 0.883495672372 -13.1311552525 21.2716220452 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;76639613;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A76639614-76639640%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A76639614-76639640&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.11945571417 0.763018822491 1.0008884612 77560767 77560793 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;77560766;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A76639614-76639640%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A77560767-77560793&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGTQNSRRQRNM Same 560216 chr4:76639614-76639640+ 1340 1340 7 0 874 76639563 76639640 Best 1347 1347;17455 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:76639563-76639640&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.407407407407 1.125 3.43438888889 0.9812 -9.28402222222 12.7184111111 0.173956760648 1.03047728863 10062 4224 4224;10062 5.37756666667 0.3499 -9.40377777778 14.7813444444 0.106506301811 0.876655167996 10909 10543 10543;10909 0.0 0.0 ENST00000425645.1,ENST00000296043.6,ENST00000469923.5 NC,CDSintron,NCintron coding exon(s) SHROOM3 alternative first exon 1348 485950 chr11:111466815-111466889+ NoOverlap chr11 111466815 111466889 + 6.74906809807 25 0.912795300221 -0.676515843868 7.42558394194 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111466814;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111466815-111466889%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111466815-111466889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.745339340517 0.762691702555 1.0383573454 111337540 111337614 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111337539;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111466815-111466889%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111337540-111337614&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EELITVQPTDLSAREFVVYQYGLSILHLLIPQLHVSLVSGLSMEQLLMEPR Same 487908 chr11:111466815-111466889+ 1313 1313 35 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.0 11.546632 0.9782 -1.492056 13.038688 0.954489566582 1.05424575384 1069 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 20.20202 0.535 -3.640804 23.842824 1.02034552975 1.05603880458 781 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 pseudogene unitary pseudogene ENSG00000255093 1355 498692 chr13:88572047-88572214+ NoOverlap chr13 88572047 88572214 + 3.41519109213 56 0.436694950354 -5.15719280977 8.5723839019 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;88572046;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A88572047-88572214%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A88572047-88572214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.148638794523 0.760670232247 1.05364794734 89224302 89224469 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;89224301;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A88572047-88572214%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A89224302-89224469&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTSLHNSIINENNPFLINSIECLSIGSVFVRFFITKNIIPISSPQTAMPLHLKLTALGVTILGFSY Same 500709 chr13:88572047-88572214+ 1406 1406 -51 0 377 88571657 88572214 524 524;1355;2644;12802 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:88571657-88572214&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.375 0.622222222222 -1.54241785714 0.0931 -3.20718214286 1.66476428571 -0.00603821009498 0.555035684867 44731 28586 28586;29351;44731;58679 25.07965 0.6899 -10.2014035714 35.2810535714 0.95235806604 0.925334269082 1802 1232 1232;1484;1802;1828 0.0 0.799472639512 chrM:12337-14148+ pseudogene mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene (ENSG00000283130) 1356 553204 chr3:120366780-120366827+ NoOverlap chr3 120366780 120366827 + 6.26614375971 16 0.932736324102 -6.06391875446 12.3300625142 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;120366779;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120366780-120366827%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A120366780-120366827&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.336969420767 0.760511162975 1.00531653122 120085627 120085674 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;120085626;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120366780-120366827%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A120085627-120085674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NVDFMDEAIYKCSAITPDGRGESTIK None NA NA 0 11 120366477 120368084 11 11;568;909;1181;1188;1356;8610 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:120366477-120368084&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.479166666667 0.0 6.6396375 0.9337 -7.0288625 13.6685 0.522877679856 1.05285930914 2983 1029 1029;1399;2108;2270;2767;2983;4768 11.1970375 0.4961 -8.50008125 19.69711875 0.615039268059 1.02388070346 3123 683 683;1974;2462;2559;2585;3123;3204 0.0 0.0 ENST00000494869.1 NC pseudogene unitary pseudogene ENSG00000240661 1357 532003 chr19:51914940-51915029- NoOverlap chr19 51914940 51915029 - 3.90154664442 30 0.545098039216 -7.72719990015 11.6287465446 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51914939;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51914940-51915029-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51914940-51915029&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.117150786885 0.759588806502 0.972986508469 52418193 52418282 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52418192;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51914940-51915029-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52418193-52418282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SYLLIHQRIHSGEKPYECLECGKTFSRKFSLTTHQR Same 533480 chr19:51914940-51915029- 1330 1330 27 0 163 51914745 51917661 195 195;409;1357;1730;14809 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51914745-51917661&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.455555555556 0.642857142857 3.74775 0.5896 -10.43276 14.18051 0.5201969822 1.05641522453 3007 301 301;1224;3007;3293;9331 24.2857033333 0.8603 -32.61492 56.9006233333 0.93398256034 0.917200892847 1923 673 673;959;1476;1923;2031 0.224908976736 chr19:52033720-52035440- 0.392685751498 chr19:36747767-36750804- ENST00000613007.4 AntiUTR5intron pseudogene zinc finger protein pseudogene (ENSG00000283285) 1358 549355 chr22:50720183-50722438+ NoOverlap chr22 50720183 50722438 + 13.4339374904 752 0.682385427472 8.45637976522 4.97755772517 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50720182;2256;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50720183-50722438%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50720183-50722438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.744792592603 0.759564105291 0.951506811042 51158611 51160866 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51158610;2256;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50720183-50722438%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51158611-51160866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLSEGSTTPRPAPWLVSPALPSAGEDEKLASLLEGRFPRSTSMQDPVREGRGIPPPPQTAPPPPPAPYYFDSGPPPAFSPPPPPGRAYDTVRSSFKPGLEARLGAGAAGLYEPGAALGPLPYPERQKRARSMIILQDSAPESGDAPRPPPAATPPERPKRRPRPPGPDSPYANLGAFSASLFAPSKPQRRKSPLVKQLQVEDAQERAALAVGSPGPGGGSFAREPSPTHRGPRPGGLDYGAGDGPGLAFGGPGPAKDRRLEERRRSTVFLSVGAIEGSAPGADLPSLQPSRSIDERLLGTGPTAGRDLLLPSPVSALKPLVSGPSLGPSGSTFIHPLTGKPLDPSSPLALALAARERALASQAPSRSPTPVHSPDADRPGPLFVDVQARDPERGSLASPAFSPRSPAWIPVPARREAEKVPREERKSPEDKKSMILSVLDTSLQRPAGLIVVHATSNGQEPSRLGGAEEERPGTPELAPAPMQSAAVAEPLPSPRAQPPGGTPADAGPGQGSSEEEPELVFAVNLPPAQLSSSDEETREELARIGLVPPPEEFANGVLLATPLAGPGPSPTTVPSPASGKPSSEPPPAPESAADSGVEEADTRSSSDPHLETTSTISTVSSMSTLSSESGELTDTHTSFADGHTFLLEKPPVPPKPKLKSPLGKGPVTFRDPLLKQSSDSELMAQQHHAASAGLASAAGPARPRYLFQRRSKLWGDPVESRGLPGPEDDKPTVISELSSRLQQLNKDTRSLGEEPVGGLGSLLDPAKKSPIAAAR None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.724734042553 0.721109623157 23.4577558511 0.8856 14.7575432181 8.70021263298 0.91132595994 0.96618095968 1264 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 44.2398480053 0.8579 20.1750299202 24.0648180851 0.941094503369 0.971837031331 1874 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 2.94403921723e-05 chr19:50666192-50669285- 0.206413182232 chr19:50666192-50669285- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 1360 505791 chr14:105601558-105601659- NoOverlap chr14 105601558 105601659 - 5.61670580331 34 0.597672550366 -2.1943176976 7.81102350091 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105601557;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105601558-105601659-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105601558-105601659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.455106381551 0.759168715612 1.06024673389 106067895 106067996 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106067894;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105601558-105601659-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106067895-106067996&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NIPSNATSVTLGCLATGYFPEPVMVTWDTGSLNGTTMTLPATTLTLSGHYATISLLTVSGAWAK None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.637254901961 0.485714285714 7.61374411765 0.9569 -8.68758529412 16.3013294118 1.01110688425 0.968742885476 645 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 7.50353235294 0.4717 -12.8079235294 20.3114558824 0.877676907161 1.08283945972 2203 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0846347390615 chr19:55544100-55544302- ENST00000390540.2 NC immunoglobulin segment overlaps an immunoglobulin region 1368 481636 chr10:100139997-100140071- NoOverlap chr10 100139997 100140071 - 4.66601599336 25 0.741788052186 -5.4604800415 10.1264960349 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100139996;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100139997-100140071-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100139997-100140071&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.343613870316 0.758435162531 1.03789917252 101899754 101899828 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101899753;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100139997-100140071-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101899754-101899828&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPSPTPLPTIGNRLQRNPKDALASLSK Same 483552 chr10:100139997-100140071- 1315 1315 53 0 722 100135400 100140071 1114 1114;1368;8196 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100135400-100140071&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586666666667 0.372208436725 -2.33212 0.7624 -9.016832 6.684712 0.04663769361 0.882065206153 23911 9829 9829;18502;23911 -1.266316 0.4146 -15.388156 14.12184 0.32020596474 0.972469217038 4445 1781 1781;1870;4445 0.0 0.238964676439 chr10:94683820-94683987+ pseudogene unitary pseudogene ENSG00000283232 1374 597383 chrX:149548857-149548895- NoOverlap chrX 149548857 149548895 - 7.76060759104 13 0.816169868127 -14.5771000385 22.3377076296 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;149548856;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149548857-149548895-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A149548857-149548895&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.321864390604 0.757084910044 1.07468768718 148630402 148630440 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;148630401;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149548857-149548895-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A148630402-148630440&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FIPEQLTCFILFQIYCNSNFQRDKPRLLENIQR Same 598033 chrX:149548857-149548895- 1151 1151 223 0 40 149548419 149549612 44 44;449;1374;8420 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:149548419-149549612&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.461538461538 0.0 16.2320384615 0.6366 -8.65342307692 24.8854615385 0.411799485042 0.963929227609 3881 96 96;3011;3881;6198 14.7907076923 0.3714 -15.3085692308 30.0992769231 0.497235993289 1.04525511954 3537 1236 1236;2536;3537;4004 0.0 0.192271541719 chrY:18547779-18548471+ ENST00000431993.1,ENST00000422892.2 NC,AntiCDSintron protein-coding gene protein-coding gene ENSG00000283697 1380 588829 chr9:35353009-35353068+ NoOverlap chr9 35353009 35353068 + 8.53130511343 20 0.927889677272 -0.508719998598 9.04002511203 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35353008;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35353009-35353068%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35353009-35353068&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.725999182548 0.755648180462 1.05074982306 35353006 35353065 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35353005;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35353009-35353068%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35353006-35353065&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLGCEAGLDILSSKELEDLLADKSR Same 589772 chr9:35353009-35353068+ 1321 1321 59 0 424 35341754 35353800 597 597;674;681;729;1148;1380;3195 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35341754-35353800&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.27149321267 11.5117 1.0 2.425805 9.085895 0.822724681226 0.979300289029 1589 613 613;676;680;821;951;1589;9444 10.267405 0.6544 -8.33535 18.602755 0.721038779551 1.02657628083 2740 210 210;564;1088;1576;2310;2740;16707 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron not annotated potentially spurious 1382 483803 chr11:18603124-18603189+ NoOverlap chr11 18603124 18603189 + 9.76220001416 22 0.88360695534 4.26664095846 5.4955590557 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;18603123;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A18603124-18603189%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A18603124-18603189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.857097632126 0.754343850659 0.887227503249 18624671 18624736 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;18624670;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A18603124-18603189%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A18624671-18624736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLMMIVVLWMLLIAGTMWKGYKYPPGGVSVPSTLFSIPTLK None NA NA 0 836 18599926 18603819 1296 1296;1382;3460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:18599926-18603819&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.409090909091 0.0 12.0492909091 1.0 3.70555 8.34374090909 0.866415231449 0.957702867315 1404 1021 1021;1404;2578 13.4930227273 0.406 3.90762727273 9.58539545455 0.509442800504 0.776980669885 3497 3106 3106;3497;4486 0.0 0.0 ENST00000542172.1 NC protein-coding gene protein coding gene ENSG00000247595 1386 588113 chr8:142575392-142575457- NoOverlap chr8 142575392 142575457 - 7.20936366509 22 0.715953307393 -3.19859562679 10.4079592919 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;142575391;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142575392-142575457-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A142575392-142575457&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.573617383442 0.753694631648 1.03934396225 143656753 143656818 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;143656752;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142575392-142575457-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A143656753-143656818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPSPQGIAIAVGWTSTSHLEEVWALLEVGPPVLR Same 589058 chr8:142575392-142575457- 1392 1392 -6 0 902 142572180 142575904 Best 1386 1386;1889;2097;3879;8408;13162;50093;62741 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:142572180-142575904&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.606060606061 0.543956043956 15.4446272727 0.8701 -2.51068181818 17.9553090909 0.871975936719 0.993948944371 1388 Best 1388 1388;1898;2170;2516;2563;4680;8183;28509 7.38996818182 0.3983 -10.5461454545 17.9361136364 0.574111094076 1.03290349347 3250 2925 2925;3250;3308;3738;3861;3909;7574;37771 0.0 0.177470266159 chr11:116790128-116791067- pseudogene extension MROH4P 6 new exons at 5' end 1389 565265 chr5:127798109-127798153+ NoOverlap chr5 127798109 127798153 + 8.73838650386 15 0.937697413596 -4.56762662729 13.3060131311 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;127798108;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A127798109-127798153%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A127798109-127798153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.512802638472 0.751959788818 0.998054831982 127133801 127133845 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;127133800;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A127798109-127798153%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A127133801-127133845&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLNFSPFQCIQKLQAEVKASQEQLIAQVSVFLLFSSLYLCHC Same 566256 chr5:127798109-127798153+ 1325 1325 64 0 904 127798109 127798153 Best 1389 1389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:127798109-127798153&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.422222222222 0.0 10.8221933333 0.9827 -5.48924666667 16.31144 0.745094965569 1.02223384227 1895 Best 1895 1895 10.9662533333 0.3809 -7.47922 18.4454733333 0.453958647398 0.997436849704 3713 Best 3713 3713 0.0 0.0 ENST00000514853.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 1393 522999 chr17:71828229-71828264- NoOverlap chr17 71828229 71828264 - 7.86435010036 12 0.970511940185 -6.7545919021 14.6189420025 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;71828228;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A71828229-71828264-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A71828229-71828264&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.274245748563 0.751264919449 0.97544318041 69824370 69824405 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;69824369;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A71828229-71828264-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A69824370-69824405&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAPNHSLIVLLAALPAKEEMPGLLMQTQR Same 524434 chr17:71828229-71828264- 1385 1385 8 0 907 71828229 71828264 Best 1393 1393 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:71828229-71828264&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.0 6.11575833333 0.9427 -12.813875 18.9296333333 0.432662645332 0.980482526954 3676 Best 3676 3676 3.59268333333 0.4902 -17.8054833333 21.3981666667 0.347918967889 1.05016816951 4243 Best 4243 4243 0.0 0.0 not annotated putative regulatory region 1394 539663 chr2:101452390-101452446- NoOverlap chr2 101452390 101452446 - 13.7530107373 19 0.906797894255 7.67777387719 6.07523686007 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;101452389;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A101452390-101452446-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A101452390-101452446&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.816719550881 0.751229263514 0.834294473047 102068852 102068908 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;102068851;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A101452390-101452446-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A102068852-102068908&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVRLVFPDLGTRRLGTRGSAR Same 541021 chr2:101452390-101452446- 1314 1314 80 0 601 101450602 101452446 924 924;1394 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:101450602-101452446&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.561403508772 0.475 11.8307315789 0.9861 5.3128 6.51793157895 0.720623158646 0.825253500281 2006 1504 1504;2006 15.1718789474 0.4028 7.89362105263 7.27825789474 0.418998203077 0.660279624353 3862 2976 2976;3862 0.0 0.0 ENST00000481179.5,ENST00000428343.5 NC,CDSintron coding exon(s) RFX8 two cassette exons previously on an NMD model 1396 519191 chr17:75590633-75590689+ NoOverlap chr17 75590633 75590689 + 11.6944632217 19 0.827405203326 3.00938931264 8.68507390901 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;75590632;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A75590633-75590689%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A75590633-75590689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.788326020066 0.751054800582 1.01771127208 73586714 73586770 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;73586713;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A75590633-75590689%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A73586714-73586770&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVCDSSVLLCLKKRFHLGRIYVWGATGTDSGR Same 520604 chr17:75590633-75590689+ 1344 1344 52 0 577 75590633 75590987 876 876;1396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:75590633-75590987&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.508771929825 0.271428571429 20.0774526316 0.9346 2.82720526316 17.2502473684 0.912761641551 1.01555640734 1258 742 742;1258 36.9624 0.7584 -1.4301 38.3925 1.0544024224 1.01544885469 273 Best 273 273;2352 0.0 0.167178330592 chr17:18125168-18125231+ ENST00000578564.5,ENST00000610510.4,ENST00000584516.5 NC,CDSintron,NCintron coding exon(s) MYO15B two cassette exons 1399 524601 chr18:54416014-54416139+ NoOverlap chr18 54416014 54416139 + 5.63990706826 42 0.771646557456 0.821166630302 4.81874043796 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;54416013;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54416014-54416139%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A54416014-54416139&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.792845398537 0.750558889614 0.964331621161 51942384 51942509 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;51942383;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54416014-54416139%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A51942384-51942509&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DYLSNEEEAFGTSLNSQRSQMTLGTLRIKSNGLQALHWHFNASEHDCLAQV Same 526037 chr18:54416014-54416139+ 1349 1349 50 0 663 54415278 54424623 1020 1020;1399;1951;1974;2187;2640;3987;7059;26481;56311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:54415278-54424623&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.127272727273 8.40784761905 0.8747 2.63636904762 5.77147857143 0.768615173869 0.9305086328 1793 1312 1312;1532;1793;1867;1963;3255;3308;3468;3714;4481 21.0373738095 0.5947 3.96872142857 17.068652381 1.08851251817 1.01584793158 85 Best 85 85;217;311;1380;1426;2121;2398;2457;2578;2838 0.0 0.0 pseudogene unitary pseudogene ENSG00000283613 1401 493892 chr12:130424479-130424565+ NoOverlap chr12 130424479 130424565 + 11.1332622417 29 0.854102177568 10.4425172189 0.69074502279 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;130424478;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A130424479-130424565%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A130424479-130424565&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.02962623877 0.749627645909 0.403181367587 130909024 130909110 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;130909023;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A130424479-130424565%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A130909024-130909110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PGPGLHAATVFPKPNRDSSSSLPQSRPLSGLRVAERLNRQPLSSR Same 495883 chr12:130424479-130424565+ 1449 1449 -48 0 912 130424479 130424565 Best 1401 1401 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:130424479-130424565&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.701149425287 0.881756756757 13.1471310345 0.9273 16.000337931 -2.85320689655 0.434788067969 0.141158436214 3659 Best 3659 3659 28.1221896552 0.964 48.7390862069 -20.6168965517 0.030464019921 -0.0385966320806 23612 Best 23612 23612 0.0 0.0 ENST00000261655.8 AntiCDSintron not annotated putative regulatory region 1403 577931 chr7:37796070-37796132+ NoOverlap chr7 37796070 37796132 + 6.25127140681 21 0.923002975509 -3.45607148466 9.70734289147 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;37796069;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796070-37796132%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A37796070-37796132&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.550683052016 0.749244050497 1.05169126007 37835672 37835734 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;37835671;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796070-37796132%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A37835672-37835734&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MINTSTLSDSSNIDLDHCDMHCRIILMTLYSVVVLSGTAGMVMMLR Same 578970 chr7:37796070-37796132+ 1409 1409 -6 0 34 37796070 37796888 35 35;91;149;575;1403;9158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:37796070-37796888&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.0 6.82706666667 0.9723 -4.32536666667 11.1524333333 0.661403589824 1.05566213613 2248 34 34;142;466;1005;2248;12157 20.7772761905 0.6595 -3.96795238095 24.7452285714 1.00884151549 1.05531281753 961 146 146;436;833;961;1880;4101 0.0 0.326284330934 chr7:37740394-37741311+ ENST00000476620.1,ENST00000461610.5 UTR5intron,NCintron pseudogene unitary pseudogene ENSG00000283444 1406 503814 chr14:35689183-35689245- NoOverlap chr14 35689183 35689245 - 4.597757158 21 0.944502937362 -6.08374291942 10.6815000774 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;35689182;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A35689183-35689245-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A35689183-35689245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.276500981469 0.748828439966 1.03135779157 36158389 36158451 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;36158388;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A35689183-35689245-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A36158389-36158451&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QPSEPSLDSPCDKEKRKHLYRQAATELDACVDVTLVEK Same 505657 chr14:35689183-35689245- 1504 1504 -98 0 433 35688390 35689833 619 619;1406;1746;5165;32191 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:35688390-35689833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.365079365079 0.0 4.4691 0.9947 -6.66808571429 11.1371857143 0.568376122817 1.06259879956 2725 554 554;1849;2725;3200;13014 0.786571428571 0.7599 -19.8302333333 20.6168047619 0.487672554146 1.08418095105 3577 277 277;2355;2616;3577;13447 0.0 0.0 ENST00000307138.10,ENST00000554652.5 CDSintron,NCintron coding exon(s) RALGAPA1 intronic CDS 1408 492633 chr12:92736485-92736532+ NoOverlap chr12 92736485 92736532 + 10.8433186598 16 0.902600709545 -3.63378733397 14.4771059938 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;92736484;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A92736485-92736532%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A92736485-92736532&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.656407794472 0.74854229739 0.988392795554 93130261 93130308 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;93130260;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A92736485-92736532%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A93130261-93130308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILFLTIFEQGKDKHKHISDLENCLSSVK Same 494615 chr12:92736485-92736532+ 1316 1316 92 0 143 92729000 92737518 171 171;1005;1408 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:92729000-92737518&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.0 13.84441875 0.9535 -7.78373125 21.62815 0.799379781378 0.962672224619 1673 811 811;1591;1673 18.25545 0.6702 -9.84094375 28.09639375 0.93264228664 1.05396060304 1931 147 147;1020;1931 0.0 0.0 ENST00000549856.5 UTR5 coding exon(s) PLEKHG7 extended CDS significantly at 5' end, previous truncated domain now intact. 1411 505799 chr14:105625077-105625226- NoOverlap chr14 105625077 105625226 - 6.47873791501 50 0.421170366979 0.368539965153 6.11019794986 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105625076;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105625077-105625226-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105625077-105625226&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.478056027346 0.748181998029 1.04393237848 106091414 106091563 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106091413;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105625077-105625226-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106091414-106091563&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DRPQPGADASTSISSSAPEFLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAK None NA NA 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.445324096982 15.369114 0.8036 0.14982 15.219294 1.08776195234 0.971098574299 33 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 12.577876 0.4112 -11.739582 24.317458 1.08471022201 1.04353453685 108 Best 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.0356400002253 chr11:720830-720909+ ENST00000390543.3 NC immunoglobulin segment overlaps an immunoglobulin region 1412 470094 chr1:9952339-9952470- NoOverlap chr1 9952339 9952470 - 5.73272730004 44 0.839462951788 1.73238644681 4.00034085323 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;9952338;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A9952339-9952470-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A9952339-9952470&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.869817612888 0.747514945429 0.901692256297 10012397 10012528 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;10012396;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A9952339-9952470-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A10012397-10012528&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CCSSVFLGFTVQFVQMEPLPRALKWMSSAFGVGSFS*GVCTMVLTVLATDCVCF Same 471976 chr1:9952339-9952470- 1356 1356 56 14 290 9951232 9960787 384 384;1216;1412;2730 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:9951232-9960787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.469696969697 0.147157190635 9.15909090909 0.932 0.376413636364 8.78267727273 0.961106387763 1.05157198302 1030 Best 1030 1030;1088;1472;1491 10.8568363636 0.3891 -1.41441818182 12.2712545455 0.771058293548 0.952870043351 2577 Best 2577 2577;2658;2964;3349 0.0 0.0 ENST00000377205.5,ENST00000462686.1 AntiUTR5intron,AntiNCintron pseudogene unitary pseudogene ENSG00000283611 1415 506521 chr15:42374406-42374531+ NoOverlap chr15 42374406 42374531 + 4.13729998505 42 0.863625761589 -2.31585961155 6.45315959659 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;42374405;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A42374406-42374531%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A42374406-42374531&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.58817095632 0.746694091326 1.05421920575 42666604 42666729 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;42666603;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A42374406-42374531%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A42666604-42666729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQRCLAQKCLFEDCVFLAGVQALASHELSHKTKI*AITWKRPK Same 508237 chr15:42374406-42374531+ 1350 1350 65 8 146 42374287 42374531 174 174;1415 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:42374287-42374531&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.507936507937 0.0 2.69932142857 0.9606 -6.0878 8.78712142857 0.634622093482 1.07911656989 2371 152 152;2371 13.4762738095 0.687 -6.0301 19.5063738095 0.998295803019 1.05750072942 1135 835 835;1135 0.0 0.163044767523 chr2:31205223-31205447- ENST00000318023.11,ENST00000466369.5 CDSintron,NCintron pseudo-exon CAPN3 alternative first coding exon is pseudogenised compared to other paralogs and orthologs 1416 591982 chr9:61067571-61067744- NoOverlap chr9 61067571 61067744 - 7.77703791446 58 0.43963425703 4.10471405272 3.67232386174 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61067570;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61067571-61067744-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61067571-61067744&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.750365346841 0.746561003427 0.914638897892 43890468 43890295 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;43890467;-172;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61067571-61067744-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A43890468-43890295&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TESFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFIRIELRGK Different 592933 chr9:61067574-61067744- 1234 1234 182 0 51 61063756 61073097 57 57;497;1416;2274;21077 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61063756-61073097&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.48275862069 0.395454545455 8.17135 0.4318 3.32622758621 4.84512241379 0.520663542537 0.909347798335 3000 1534 1534;1928;3000;3904;11180 43.6608551724 0.8216 11.2359931034 32.424862069 0.944837923306 0.99867882454 1854 1059 1059;1309;1336;1510;1854 0.997682089717 chr9:41923869-41924093- 0.85797112636 chr9:41923869-41924093- pseudogene contactin associated protein-like 3B (CNTNAP3B) unprocessed pseudogene (ENSG00000283541) 1417 561208 chr4:17557911-17557994- NoOverlap chr4 17557911 17557994 - 7.65363919256 28 0.514675364309 -9.51843205094 17.1720712435 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17557910;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17557911-17557994-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17557911-17557994&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.461884777172 0.746099092228 0.988613623374 17559534 17559617 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17559533;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17557911-17557994-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17559534-17559617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IGGQPVEHAFIITGQGASITYFPLILVLMPLPGLICCQ Same 562199 chr4:17557911-17557994- 1247 1247 170 0 920 17557911 17557994 Best 1417 1417 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17557911-17557994&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.440476190476 0.269230769231 -1.29484642857 0.0963 -3.38168214286 2.08683571429 0.0164233274327 0.532302872999 34031 Best 34031 34031 7.18505 0.2678 -5.889625 13.074675 0.428025253672 0.944599214208 3827 Best 3827 3827 0.0 0.658125784647 chrM:14747-15887+ pseudogene mitochondrially encoded cytochrome b (MT-CYB) pseudogene (ENSG00000283219) 1418 597192 chrX:130523466-130523549- NoOverlap chrX 130523466 130523549 - 5.03120349986 28 0.63749250673 -4.64420016749 9.67540366735 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;130523465;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A130523466-130523549-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A130523466-130523549&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.336735138133 0.74600027617 1.04321544391 129657440 129657523 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;129657439;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A130523466-130523549-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A129657440-129657523&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QSSQENPIPEVRAYHLLDLCLGVKLPVIPGSDNVFYTTVLSEK Same 597842 chrX:130523466-130523549- 1457 1457 -39 0 585 130515787 130523549 894 894;1418;1908 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:130515787-130523549&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.428571428571 0.260061919505 8.73057857143 0.9458 -5.94411785714 14.6746964286 0.928896791326 1.02618067125 1197 889 889;1101;1197 12.2475 0.3661 -4.90891785714 17.1564178571 0.762963776225 1.02144653866 2591 2029 2029;2218;2591 0.127170621082 chr2:185739346-185739471+ 0.220697418842 chr2:185739346-185739471+ ENST00000458525.1 NCintron pseudogene extension fibrous sheath interacting protein 2 (FSIP2) pseudogene extended (ENSG00000274775) 1423 530971 chr19:35790321-35790509- NoOverlap chr19 35790321 35790509 - 4.1362348698 63 0.772322071933 -1.28919368698 5.42542855678 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35790320;189;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35790321-35790509-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35790321-35790509&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.618152672153 0.744219657721 1.03496573323 36281223 36281411 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36281222;189;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35790321-35790509-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36281223-36281411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LCFLAGELPWAGRGGPEVKAKLEAGESPALEPRVPAPYQALIRAGLGLAPADRWGSLQSTRYLLREAPAQVQGR Same 532438 chr19:35790321-35790509- 1341 1341 82 0 212 35784826 35806955 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.703703703704 0.301229508197 1.68236507937 0.938 -6.26381904762 7.94618412698 0.609687831395 1.05883056373 2487 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 -1.9772952381 0.5717 -13.8955539683 11.9182587302 0.471390520645 0.976524322342 3649 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.0490331044431 chr1:156881457-156881642+ ENST00000433059.1 NCintron pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 1425 543322 chr20:36206050-36206106+ NoOverlap chr20 36206050 36206106 + 11.0071420042 19 0.806724410018 1.66010005537 9.34704194885 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;36206049;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36206050-36206106%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A36206050-36206106&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.767399867769 0.744072614229 1.03822603509 34793972 34794028 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;34793971;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36206050-36206106%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A34793972-34794028&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RANTQQQGKMIASPEDFESVGEEGPWIR Same 544711 chr20:36206050-36206106+ 1403 1403 22 0 105 36205843 36208375 125 125;723;906;1185;1244;1425;3209;4167;4835;30161 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:36205843-36208375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.421052631579 0.0 13.0470631579 0.9629 -3.62375263158 16.6708157895 0.879037839454 1.01423048276 1366 172 172;398;1291;1366;1423;1562;1733;1995;6918;10311 14.8153105263 0.6923 -8.82995263158 23.6452631579 0.886416017147 1.05986528377 2169 1508 1508;2023;2148;2169;2610;3152;3488;3607;4506;5668 0.0 0.0 ENST00000202028.9 CDSintron coding exon(s) EPB41L1 three consectutive cassette exons 1426 475502 chr1:204371543-204371605- NoOverlap chr1 204371543 204371605 - 9.52183329633 21 0.855716501906 2.80098570387 6.72084759247 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204371542;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204371543-204371605-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204371543-204371605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.810984082311 0.7440669366 0.97160425931 204340671 204340733 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204340670;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204371543-204371605-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204340671-204340733&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFCSDEEKSTSWVHPGTKSPIQSGHTSCPGK Same 477387 chr1:204371543-204371605- 1347 1347 79 0 537 204359879 204378165 815 815;1426;2477;10157;27979;29433;67476 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204359879-204378165&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.539682539683 0.0 14.9658 0.9984 3.15038095238 11.8154190476 0.967132050607 1.03982920525 986 683 683;986;1894;9248;41567;43122;51633 26.9101666667 0.5104 9.24111904762 17.669047619 0.940203948013 0.957567220661 1881 208 208;1881;2415;9734;19689;34362;42976 0.0 0.0 ENST00000564627.1 NC not annotated putative regulatory region 1428 530995 chr19:35900443-35900505- NoOverlap chr19 35900443 35900505 - 14.7206332173 21 0.765194171054 11.3085190732 3.41211414408 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35900442;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35900443-35900505-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35900443-35900505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.859223074299 0.743740921607 0.602701169402 36391345 36391407 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36391344;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35900443-35900505-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36391345-36391407&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPGGGSAGETARLAQRRGRGPGGPQSTPRNPR Same 532462 chr19:35900443-35900505- 1438 1438 -10 0 275 35897702 35900539 360 360;1428;9480;10866 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35897702-35900539&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 0.948160535117 11.3727190476 0.9658 5.24091428571 6.1318047619 0.707786755546 0.819834555622 2053 295 295;1255;2053;19414 7.64234761905 0.4709 2.37701904762 5.26532857143 0.263613423962 0.614261102688 5032 65 65;3028;5032;47030 0.0 0.0 ENST00000396901.5,ENST00000586361.5,ENST00000606253.5 UTR5,NC,UTR5intron coding exon(s) NFKBID 5' extension 1430 522545 chr17:58331205-58331258- NoOverlap chr17 58331205 58331258 - 7.07391107082 18 0.877883743208 -4.07428897452 11.1482000453 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;58331204;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A58331205-58331258-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A58331205-58331258&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.527663104647 0.743381037915 1.03214297059 56408566 56408619 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;56408565;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A58331205-58331258-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A56408566-56408619&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VESTTNSTGGCSVSYFMDECTVGFGDHATAAAR Same 523973 chr17:58331205-58331258- 1378 1378 52 0 927 58324435 58331258 Best 1430 1430;23079;35188;45808;68388 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:58324435-58331258&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.537037037037 0.514285714286 4.42214444444 0.9642 -8.90730555556 13.32945 0.517957442634 1.06336372628 3022 Best 3022 3022;4098;31103;33297;53580 0.177988888889 0.8062 -16.7259833333 16.9039722222 0.323658476712 1.00747107323 4412 Best 4412 4412;7618;50126;62080;66751 0.0 0.0 ENST00000579003.1,ENST00000578334.5 NC,AntiNCintron not annotated putative regulatory region 1432 533638 chr2:61178982-61179170+ NoOverlap chr2 61178982 61179170 + 5.3792745717 63 0.622346716464 0.862144374658 4.51713019704 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;61178981;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A61178982-61179170%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A61178982-61179170&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.703786668823 0.742368801061 0.983626545632 61406117 61406305 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;61406116;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A61178982-61179170%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A61406117-61406305&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TERDATSLSKGKFQELLVGIVVENDAGRGEINELKQVEGEASCSSRKGKLIFFYEWNIKLGWK Same 535022 chr2:61178982-61179170+ 1422 1422 10 0 929 61177533 61186081 Best 1432 1432;2951;3231;3681;13227 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:61177533-61186081&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.660839160839 8.17458412698 0.9465 -0.503507936508 8.67809206349 0.967467288833 1.06153602098 983 Best 983 983;1603;2853;6337;7813 43.6088428571 0.9566 9.52284920635 34.0859936508 0.97047352754 0.990129346461 1570 374 374;473;1570;1744;2201 0.0 0.457674847646 chr14:77459616-77459838+ ENST00000357022.6,ENST00000471542.5 UTR5,NC pseudogene AHSA2 has 4 pseudo exons upstream of the ATG, so switched to pseudogene AHSA2P (ENSG00000173209) 1436 535725 chr2:166414489-166414578+ NoOverlap chr2 166414489 166414578 + 10.9865968128 30 0.390150301366 0.563143244386 10.4234535684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;166414488;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A166414489-166414578%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A166414489-166414578&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.523157684617 0.741303163149 1.03236192502 167270999 167271088 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;167270998;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A166414489-166414578%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A167270999-167271088&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DIYIYIYISPILYQHLF*FFGHPEVYILILPGFGIISHIR Same 537088 chr2:166414489-166414578+ 1600 1600 -164 9 932 166414489 166414729 Best 1436 1436;2595 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:166414489-166414729&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.846394984326 0.932573333333 0.0543 -2.09660666667 3.02918 0.037823399875 0.646989621034 26191 Best 26191 26191;35402 39.8100733333 0.6427 -4.86509666667 44.67517 1.03409427755 0.962033944857 574 343 343;574 0.0 0.773634231007 chrM:5904-7445+ ENST00000409855.5,ENST00000424326.5 AntiCDSintron,AntiNCintron pseudogene mitochondrially encoded cytochrome c oxidase I (MT-CO1) pseudogene (ENSG00000283657) 1438 566411 chr5:170245967-170246011+ NoOverlap chr5 170245967 170246011 + 7.69501344264 15 0.955795630833 -4.92166649501 12.6166799376 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;170245966;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A170245967-170246011%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A170245967-170246011&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.429609251701 0.74073833891 1.00826059304 169672971 169673015 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;169672970;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A170245967-170246011%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A169672971-169673015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HMCYNIISPVLFCTELSQLLLCDLILHFNHPIK Same 567409 chr5:170245967-170246011+ 1423 1423 15 0 655 170234995 170246011 1010 1010;1438 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:170234995-170246011&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.377777777778 0.0 10.68114 1.0 -4.41932 15.10046 0.761013671539 1.03700574788 1816 Best 1816 1816;2223 15.96348 0.5367 -3.29492666667 19.2584066667 0.711417545313 0.994570217003 2769 Best 2769 2769;3835 0.0 0.0 ENST00000421269.4,ENST00000517575.4 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 1439 588345 chr9:8438698-8438760+ NoOverlap chr9 8438698 8438760 + 6.9764380228 21 0.956694895857 -2.20459527345 9.18103329624 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;8438697;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A8438698-8438760%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A8438698-8438760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.622497845146 0.740736691978 1.05487419009 8438698 8438760 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;8438697;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A8438698-8438760%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A8438698-8438760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLDLFERIVGESYYHIWTEWWFG Same 589291 chr9:8438698-8438760+ 1482 1482 -43 0 934 8437052 8438823 Best 1439 1439;10011;23498;48565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:8437052-8438823&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.47619047619 1.07386363636 -0.602052380952 1.0 -2.76978571429 2.16773333333 0.0198495426963 0.501004338572 32674 18912 18912;32674;56844;67818 -1.72099047619 0.7109 -4.16298571429 2.4419952381 0.039469927072 0.49775302153 21160 17802 17802;21160;38054;45986 0.0 0.0 ENST00000355233.9 AntiCDSintron coding exon(s) PTPRD cassette exon 1441 727974 chr9:120799571-120799627+ Extension chr9 120799571 120799627 + 8.45135262765 19 0.930390751427 -1.153600012 9.60495263966 chr9:120799529-120799627+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;120799570;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A120799571-120799627%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A120799571-120799627&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.680631894921 0.740096779546 1.05160216628 123561849 123561905 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;123561848;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A120799571-120799627%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A123561849-123561905&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ECTLFETSYELISCKLLTYLDSFK Same 728566 chr9:120799571-120799627+ 1398 1398 43 0 936 120793125 120799627 Best 1441 1441;36018;70340;71913 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:120793125-120799627&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.421052631579 0.422222222222 11.0310315789 0.9789 -2.92238421053 13.9534157895 0.833158064967 1.04794902761 1543 Best 1543 1543;12540;63676;71284 37.1958368421 0.9181 0.429557894737 36.7662789474 0.998612537628 1.02495539675 1127 Best 1127 1127;24341;36619;41840 0.0 0.0150441287219 chr6:33277420-33278556+ protein-coding gene protein-coding gene ENSG00000214654; found after looking at high-scoring intergenic PCCRs 1442 481625 chr10:100105748-100105804- NoOverlap chr10 100105748 100105804 - 10.8124684786 19 0.774834660467 0.476010470014 10.3364580085 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100105747;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100105748-100105804-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100105748-100105804&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.746903378258 0.739983098841 1.04373035787 101865505 101865561 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101865504;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100105748-100105804-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101865505-101865561&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSFLPGKRACVGESLAHIELFLFLFF Same 483541 chr10:100105748-100105804- 1463 1463 -21 0 90 100105748 100122651 105 105;606;781;1442;2015;3184;14859;17791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100105748-100122651&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.508771929825 0.279411764706 7.08000526316 0.7111 -8.22068947368 15.3006947368 0.537649226701 1.03331565062 2888 2120 2120;2485;2770;2888;8530;10411;15939;19257 8.14578421053 0.2527 -8.9117 17.0574842105 0.370404269945 1.00000822653 4117 209 209;267;1101;3020;3409;3819;4117;17036 0.0 0.157615016111 chr11:14878122-14878297- pseudogene unitary pseudogene ENSG00000283232 1449 517069 chr17:33692378-33692461+ NoOverlap chr17 33692378 33692461 + 8.91070350366 28 0.445783605271 -2.44682132666 11.3575248303 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;33692377;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A33692378-33692461%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A33692378-33692461&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.452634326625 0.73797258019 1.00224305205 32019397 32019480 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;32019396;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A33692378-33692461%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A32019397-32019480&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATPHFTEPTTK*FFIQAAASIVLTVAMIINIR Same 518464 chr17:33692378-33692461+ 1560 1560 -111 10 943 33692259 33692461 Best 1449 1449;2280 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:33692259-33692461&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.392857142857 0.0 -0.884764285714 0.1313 -2.95274642857 2.06798214286 0.0139784195688 0.533941760251 35099 Best 35099 35099;40315 27.5470857143 0.5615 4.21718928571 23.3298964286 1.07273924464 1.04926293343 155 72 72;155 0.0 0.747413224539 chrM:4470-5511+ ENST00000359872.6 AntiCDSintron pseudogene MT-ND2 pseudogene (ENSG00000283381) 1450 514129 chr16:49963347-49963418- NoOverlap chr16 49963347 49963418 - 6.67189166322 24 0.643663691157 -3.5486917384 10.2205834016 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;49963346;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A49963347-49963418-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A49963347-49963418&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.474170096362 0.737344989201 1.03806685182 49997258 49997329 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;49997257;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A49963347-49963418-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A49997258-49997329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGLTCALQGVKDDGSPLCILVEQSNVK Same 515781 chr16:49963347-49963418- 1498 1498 -48 0 944 49963347 49963418 Best 1450 1450 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:49963347-49963418&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.32 2.94977083333 0.7328 -13.430275 16.3800458333 0.580276853169 1.01827650122 2654 Best 2654 2654 14.24565 0.7783 -12.8727916667 27.1184416667 0.93889716878 1.05015279675 1892 Best 1892 1892 0.0 0.0 pseudogene unitary pseudogene ENSG00000283365 1454 529181 chr19:51694477-51694539+ NoOverlap chr19 51694477 51694539 + 10.2008905297 21 0.7452964065 -10.1224667061 20.3233572358 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51694476;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51694477-51694539%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51694477-51694539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.778408689923 0.73597575486 1.0722757014 52197730 52197792 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52197729;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51694477-51694539%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52197730-52197792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHGVAGSCLPQPLLPPSPPDYDERSHLHDTFTQMTHALQELAAAQGECVGMGR Same 530640 chr19:51694477-51694539+ 1143 1143 311 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.0 18.313652381 0.9171 -10.3338714286 28.6475238095 0.837379401968 1.03057785544 1526 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 14.8526809524 0.476 -17.1562 32.0088809524 0.862177271174 0.998276972783 2265 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.0 ENST00000571328.1 NC protein-coding gene protein-coding gene ENSG00000182310 1457 579745 chr7:143624127-143624390+ NoOverlap chr7 143624127 143624390 + 4.27914888378 88 0.501363254888 -0.639084028588 4.91823291237 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143624126;264;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143624127-143624390%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143624127-143624390&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.499703338489 0.734958816999 1.00074485546 143321220 143321483 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143321219;264;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143624127-143624390%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143321220-143321483&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVVVSHEGYLSHAGLASFLLNAVSWLCPCPGAPVGVRPSLAPLVNILQDAGLEAQVKPEPGEPLGVYCINAYNDTLTATLIQFVKHGGGLLIGGQAWYWASQHGPDKVLSRFPGNKVTSVAGVYFTDTYGDRDRFKVSKKVPKIPLHVR Same 580715 chr7:143624127-143624390+ 1264 1264 193 0 552 143620652 143624390 837 837;1457;51543 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143620652-143624390&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.556818181818 0.245261984392 9.11242159091 0.9576 -1.69492272727 10.8073443182 1.00578644837 1.06069287803 681 Best 681 681;1141;27038 24.9078318182 0.8849 -5.26941136364 30.1772431818 1.03614239753 1.03814313359 538 Best 538 538;842;49179 0.933656614945 chr7:143702995-143703617+ 0.743598524854 chr7:143702995-143703617+ ENST00000518791.5,ENST00000357344.8 CDSintron,UTR5intron pseudogene transient receptor potential cation channel, subfamily M, member 8 channel-associated factor (TRPM8) pseudogene existed on the wrong strand (ENSG00000283537) 1459 479576 chr10:129835481-129835516+ NoOverlap chr10 129835481 129835516 + 6.8155498604 12 0.924214796165 -7.55116671324 14.3667165736 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129835480;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129835481-129835516%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129835481-129835516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.190638681381 0.734652021685 0.973414859882 131633745 131633780 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131633744;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129835481-129835516%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131633745-131633780&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HKPSEGMGKLAGVLSASM Same 481481 chr10:129835481-129835516+ 1420 1420 39 0 950 129833677 129912391 Best 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.638888888889 0.3 1.22973333333 0.9323 -7.40525 8.63498333333 0.0772417503919 0.92137925429 18652 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -10.55565 0.7709 -13.097025 2.541375 -0.0469927448292 0.408676308676 69962 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000368648.7 AntiUTR3 not annotated potentially spurious 1460 539824 chr2:110023300-110023395- NoOverlap chr2 110023300 110023395 - 7.09867822658 32 0.532784962234 -0.292240612209 7.39091883879 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110023299;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110023300-110023395-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110023300-110023395&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.505838497664 0.734490385354 1.05099277041 110780877 110780972 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110780876;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110023300-110023395-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110780877-110780972&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QHEPAGLCLCSCVFPHYCPPGSAQPRACPGGSEALNGTSLRVSEEICCLPPL Same 541184 chr2:110023300-110023395- 1554 1554 -94 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.65625 0.299376299376 12.86029375 0.7793 0.65651875 12.203775 0.954766171057 1.05533337022 1065 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 27.42195 0.6331 4.84724375 22.57470625 1.08623787881 1.04831617331 97 Best 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 1465 581614 chr7:81570270-81570329- NoOverlap chr7 81570270 81570329 - 4.05505003333 20 0.860379949645 -7.16302505881 11.2180750921 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;81570269;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81570270-81570329-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A81570270-81570329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.153187184814 0.733996990859 1.017458072 81199586 81199645 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;81199585;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81570270-81570329-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A81199586-81199645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AHQSLGYYILELMTMSEYIQQLGQSVFLQDVNNNPPQCSQDIYM Same 582573 chr7:81570270-81570329- 1414 1414 51 0 592 81560120 81607572 904 904;925;973;1260;1465;2153;3581;4237;4691;5577 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:81560120-81607572&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.366666666667 0.535714285714 4.28631 0.9499 -11.61381 15.90012 0.620318647499 1.0282901616 2439 1152 1152;1609;1628;2206;2439;2771;3071;3088;3130;3532 5.651275 0.4499 -17.088845 22.74012 0.616322305788 1.08419138016 3114 2526 2526;2821;2931;3052;3114;3116;3529;3585;4138;5392 0.0 0.0 pseudogene unitary pseudogene ENSG00000233491 1466 510639 chr16:8885212-8885277+ NoOverlap chr16 8885212 8885277 + 9.13674979623 22 0.682315487214 -9.70215916498 18.8389089612 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;8885211;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A8885212-8885277%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A8885212-8885277&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.695475992173 0.733821306671 1.03311224564 8979069 8979134 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;8979068;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A8885212-8885277%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A8979069-8979134&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YVLGCCFLAFCIRSLMDVKHSCPVCQRELFYYHR Same 512276 chr16:8885212-8885277+ 1159 1159 307 0 955 8884359 8885277 Best 1466 1466;1834;7767 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:8884359-8885277&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.560606060606 0.964912280702 17.1302636364 0.9278 -22.9447681818 40.0750318182 0.633743399574 1.14176110923 2376 1415 1415;2376;4905 26.0338318182 0.567 -30.3707863636 56.4046181818 0.749175694924 0.948636135619 2635 2072 2072;2635;3066 0.0 0.0 protein-coding gene protein coding gene ENSG00000283516 1467 491564 chr12:52353887-52353940+ NoOverlap chr12 52353887 52353940 + 11.1278666655 18 0.811284894416 -0.816877855195 11.9447445207 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52353886;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52353887-52353940%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52353887-52353940&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.733110956093 0.733687959769 1.02737930341 52747671 52747724 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52747670;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52353887-52353940%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52747671-52747724&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PVSLSTCVSHSQGGVVCGDLDSTASCGSGGVAISSGALCCPSAVGACSSAQSVR Same 493542 chr12:52353887-52353940+ 1474 1474 -7 0 956 52353887 52353940 Best 1467 1467 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52353887-52353940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.167182662539 8.97087222222 0.9729 -10.1440166667 19.1148888889 0.778808563502 0.966267177871 1763 Best 1763 1763 12.5264333333 0.4209 -11.4304722222 23.9569055556 0.683167400913 1.06476960941 2870 Best 2870 2870 0.141543889482 chr12:52314631-52314818- 0.117848425908 chr12:52286354-52286493- pseudogene extension KRT89P pseudogene extension 1468 507339 chr15:74217332-74217571+ NoOverlap chr15 74217332 74217571 + 4.24328998178 80 0.603254558633 -0.561684940103 4.80497492189 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;74217331;240;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A74217332-74217571%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A74217332-74217571&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.572425432713 0.733141561675 0.999122155932 74509673 74509912 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;74509672;240;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A74217332-74217571%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A74509673-74509912&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEEKTLDLEFEVLSVGFNEAGRYALRLSAENPLQVGSGAGVQLQVNDGDPFPACSAITDVIEQQEPGQSLTLTRSKFIFTLPK Same 509063 chr15:74217332-74217571+ 1343 1343 125 0 709 74217332 74218720 1097 1097;1468;1726 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:74217332-74218720&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.570833333333 0.312907431551 6.3890825 0.8706 -2.78413375 9.17321625 0.903769699755 1.07168621255 1283 1208 1208;1283;1369 19.19737875 0.6598 -3.3090375 22.50641625 0.981099586857 1.05676935492 1404 135 135;349;1404 0.0 0.0 ENST00000559243.1,ENST00000560148.5 NC,NCintron coding exon(s) CCDC33 additional 5' exons 1471 571891 chr6:60531226-60531288+ NoOverlap chr6 60531226 60531288 + 7.93099040077 21 0.912504768444 -0.147985687568 8.07897608834 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;60531225;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60531226-60531288%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A60531226-60531288&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.725673924858 0.732666357023 1.04007826941 57498973 57499035 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;57498972;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60531226-60531288%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A57498973-57499035&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILDLVKGTHYQVACQKYFEMIHNVSIFLTLYPNYLSFVTVSHSGFLVAAMETTLAIFSR Same 572916 chr6:60531226-60531288+ 1428 1428 43 0 959 60531226 60531288 Best 1471 1471 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:60531226-60531288&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.365079365079 0.0 12.6576285714 0.9511 3.12733333333 9.5302952381 0.817970927766 0.99714073514 1606 Best 1606 1606 30.0708809524 0.7291 6.81595238095 23.2549285714 1.05072403909 1.03170079125 313 Best 313 313 0.980081082111 chr6:57632133-57632201+ 0.810996272151 chr6:57632133-57632201+ redundant PhyloCSF signals are accounted for elsewhere on the list 1472 519790 chr17:1714671-1714760- NoOverlap chr17 1714671 1714760 - 6.03494003912 30 0.943346303502 0.0969732751449 5.93796676397 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;1714670;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1714671-1714760-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A1714671-1714760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.766498258596 0.732444577919 0.992456701208 1617965 1618054 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;1617964;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1714671-1714760-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A1617965-1618054&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPCPWTECQHGPALPSSHPPSLPRPQPPPWAMLQGPAFPADSCVGTVGAGLGTWNKVQTWRGRQTAWNSYQMYPECASGMPGI Same 521197 chr17:1714671-1714760- 1515 1515 -43 0 960 1713893 1724692 Best 1472 1472;3348;6953;15387;36265;37604;43154 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:1713893-1724692&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.584415584416 2.46507 0.9718 -1.77212333333 4.23719333333 0.293467460261 0.761507891304 5776 Best 5776 5776;16857;18965;26440;56587;71733;73726 -4.51094666667 0.5976 -10.95178 6.44083333333 0.111785648511 0.70996136028 10479 Best 10479 10479;11209;21855;38681;45206;66911;67671 0.0 0.0892791618369 chr19:15174068-15174400- ENST00000334146.7 NCintron not annotated putative regulatory region 1475 570774 chr6:26196374-26196508+ NoOverlap chr6 26196374 26196508 + 6.16747327944 45 0.594743436501 1.08764446928 5.07982881015 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;26196373;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A26196374-26196508%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A26196374-26196508&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.659841613095 0.731951560495 0.990515309807 26196602 26196736 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;26196601;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A26196374-26196508%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A26196602-26196736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KIKTEARKAAAVMPKTAVLAAERPKKAWGVLIPKKSTKRTPKAFAGGGCWR Same 571798 chr6:26196374-26196508+ 1526 1526 -51 0 963 26196321 26196594 Best 1475 1475;4317;8244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:26196321-26196594&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.625482625483 14.5034177778 0.8641 1.99454666667 12.5088711111 1.06889452571 1.03191919614 91 Best 91 91;2362;2898 19.1842977778 0.4882 -0.605755555556 19.7900533333 1.12193504927 1.04465653986 16 Best 16 16;2402;2695 0.479920201542 chr6:26055787-26056428- 0.404113025561 chr6:26055787-26056428- pseudogene histone 1, H1, pseudogene 1 (ENSG00000216331) 1476 585611 chr8:144049291-144049581+ NoOverlap chr8 144049291 144049581 + 3.81050102121 97 0.546627559524 -1.03778038842 4.84828140963 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144049290;291;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144049291-144049581%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144049291-144049581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.482048833244 0.731672867168 0.987765500324 145104192 145104482 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145104191;291;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144049291-144049581%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145104192-145104482&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AALLLLLLVVGPPLALPGLPLWLVPQVWRRPFCYRSPPLCWAPPALWRPPAEPGRCFVFLTANLCLLPDGQARFGNLPHSQRPAEAIGAARPALYRATDCSQPWSR Same 586549 chr8:144049291-144049581+ 1168 1168 308 0 591 144049161 144051191 902 902;1476;2944;3502;6411;8419;8554;19953;27554 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144049161-144051191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.752577319588 0.943676395289 7.04871752577 0.7668 -1.25699690722 8.30571443299 0.919754568078 1.04638159027 1234 822 822;1234;1275;2096;2721;3466;4144;4232;11683 11.2716618557 0.6293 -5.32151030928 16.5931721649 0.958301261671 1.04475532436 1721 1010 1010;1721;1924;2036;2359;2452;2682;3550;3684 0.0 0.301284166178 chr16:68370859-68372181- ENST00000561181.5 NC pseudogene unitary pseudogene (ENSG00000204791) 1478 527897 chr19:31118515-31118553+ NoOverlap chr19 31118515 31118553 + 5.79765360172 13 0.87325034773 -8.25251553609 14.0501691378 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;31118514;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A31118515-31118553%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A31118515-31118553&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132385803836 0.731289389381 0.969634151656 31609421 31609459 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;31609420;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A31118515-31118553%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A31609421-31609459&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EALTHDQLPSNILQPT*QLSGRG*SAR Same 529344 chr19:31118515-31118553+ 1383 1383 95 6 965 31118515 31118553 Best 1478 1478 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:31118515-31118553&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.589743589744 0.295454545455 7.23236923077 0.9569 -12.3017461538 19.5341153846 0.531168879744 0.969943936835 2930 Best 2930 2930 2.70394615385 0.6971 -14.2642230769 16.9681692308 0.330337836247 0.975050651068 4356 Best 4356 4356 0.0 0.0 not annotated putative regulatory region 1484 586297 chr8:30849192-30849308- NoOverlap chr8 30849192 30849308 - 5.0107974731 39 0.880704966812 -0.309400025087 5.32019749819 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;30849191;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A30849192-30849308-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A30849192-30849308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.740519203186 0.730346522489 0.990743927725 30706708 30706824 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;30706707;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A30849192-30849308-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A30706708-30706824&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TCSLNNCTVAKRFGKGKDATVTFVHFKKPVDPFVQENCLCNALNSEINPFISNISNSYGNVQNGNISIPETYSGQTEHSLAEIR Same 587236 chr8:30849192-30849308- 1432 1432 52 0 38 30849192 30875103 41 41;442;759;1484;2461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:30849192-30875103&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.376068376068 0.0 7.26022051282 0.9999 0.0204538461538 7.23976666667 0.855355680328 1.00332852629 1448 108 108;522;666;1448;1996 11.1443307692 0.6328 -2.08639487179 13.230725641 0.830958850225 0.968353960798 2387 180 180;472;1139;2145;2387 0.0 0.0 ENST00000523186.5 NC coding exon(s) TEX15 5' extended 1487 485947 chr11:111463102-111463155+ NoOverlap chr11 111463102 111463155 + 9.37540556242 18 0.859984910523 -1.11352780213 10.4889333646 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111463101;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111463102-111463155%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111463102-111463155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.689815990287 0.729418041647 1.04539989519 111333827 111333880 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111333826;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111463102-111463155%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111333827-111333880&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QNFLAKALGQLQYRREWSCLQLLHTQVLIPGLDLAEEICISIFDR Same 487905 chr11:111463102-111463155+ 1433 1433 54 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.3375 11.2071111111 0.9792 -5.55383888889 16.76095 0.838215009238 1.01123730493 1521 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 12.6235388889 0.3493 -6.40577222222 19.0293111111 0.550874526464 1.01706292615 3343 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 pseudogene unitary pseudogene ENSG00000255093 1488 481619 chr10:99930539-99930589- NoOverlap chr10 99930539 99930589 - 14.5821882416 17 0.94239719234 1.41380004322 13.1683881984 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;99930538;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A99930539-99930589-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A99930539-99930589&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.747361340379 0.729004605909 1.02005577822 101690296 101690346 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101690295;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A99930539-99930589-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101690296-101690346&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQHQPYRKRDCGYWDFEQSEPSYMDCGEAHESGK Same 483535 chr10:99930539-99930589- 1364 1364 124 0 458 99929612 99930589 658 658;1488 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:99929612-99930589&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.43137254902 0.0 11.5888588235 0.9987 3.2593 8.32955882353 0.731333795323 0.919578807445 1969 604 604;1969 7.85347058824 0.4733 -6.36244705882 14.2159176471 0.434663584107 0.916223861374 3810 918 918;3810 0.0 0.0325842364645 chr19:49525457-49525573+ ENST00000324109.8,ENST00000434409.1 CDSintron,AntiNCintron coding exon(s) DNMBP alternative first exon 1489 546235 chr21:8210320-8211207+ NoOverlap chr21 8210320 8211207 + 1.29433210939 296 0.548696951701 0.763402358201 0.530929751191 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8210319;888;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8210320-8211207%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8210320-8211207&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.598904093426 0.728799768902 0.687194011808 109767 110654 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;109766;888;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8210320-8211207%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A109767-110654&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDLGSGRAVRREASHRPSPPLASRRPLDALS*VSRGARSVYFEKIRVFKAGPSRLDTAARNNGIGPRFYFVGFRN*GHD*EGRPGAFVLRR*R*NSWTGARRTRAKAFAKNVFINQERKSEVRRRSDTVVVPTINDADRRCGGVIPMTRRAASGKPKSLGSGGSMVAKLKLKGIDGRAPPGVEPAA*FDSTRETSPGPDTDRIDRLIALSRFRGWWCMAVLSWWSDLSG*FR*RTRLWHAN*LRDPRAVGVPQLLRGTSGVQPPEIEQ*QVCDALRCPGLHARYTDWLSVCLPYAGRRG Same 547649 chr21:8210320-8211207+ 1306 1306 183 203 973 8209806 8218947 Best 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.57545045045 1.09460708783 -2.47952702703 0.2515 -2.67767060811 0.198143581081 0.0144715929772 0.51192087734 34899 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -2.93261655405 0.1705 -3.01183817568 0.0792216216216 0.0355246000945 0.385949106176 22155 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1,ENST00000631211.1 NCintron,AntiNC not annotated SSU-rRNA_Hsa repeat sequence 1491 623717 chr11:67666936-67667019- Extension chr11 67666936 67667019 - 6.72529997144 28 0.605960827911 -1.46557133326 8.1908713047 chr11:67666921-67667019- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;67666935;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67666936-67667019-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A67666936-67667019&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.512674094204 0.728587865943 1.05656515319 67434407 67434490 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;67434406;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67666936-67667019-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A67434407-67434490&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPPPPQPAFEADISELILCQNEVDYALKNLQAWMK Same 624400 chr11:67666936-67667019- 1558 1558 -67 0 46 67666936 67667628 52 52;1491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:67666936-67667628&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.547619047619 0.48 18.2971107143 0.9567 -3.21045 21.5075607143 1.03857886768 0.960652910236 379 364 364;379 35.6744821429 0.8411 -13.3495464286 49.0240285714 1.04023836658 0.94754213002 477 Best 477 477;1458 0.234187402436 chr11:68018527-68018637+ 0.473062445527 chr11:68018527-68018637+ ENST00000349015.7,ENST00000531881.5 Extension5p,NC pseudo-exon ALDH3B2 has a premature termination codon compared to other family members, and this signal follows downstream 1493 530974 chr19:35791248-35791343- NoOverlap chr19 35791248 35791343 - 6.87432514876 32 0.692318513008 1.35505307885 5.51927206991 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35791247;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35791248-35791343-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35791248-35791343&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.74048904683 0.728263405153 0.972339948878 36282150 36282245 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36282149;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35791248-35791343-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36282150-36282245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHHPGLLLLMALSPSADLSGLCLLFEPVWLGSLQGVLHPPRPSEEAPGTVLGLPPRPPAAAGAK Same 532441 chr19:35791248-35791343- 1487 1487 6 0 212 35784826 35806955 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.625 0.106666666667 9.9742 0.9274 -0.774790625 10.748990625 0.933886352914 1.06200282558 1172 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 5.044703125 0.6361 -12.863640625 17.90834375 0.735676687952 1.06769434984 2690 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.0811698715161 chr17:58613421-58613544- ENST00000433059.1 NC pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 1494 500230 chr13:97110055-97110108- NoOverlap chr13 97110055 97110108 - 13.3362223075 18 0.839138543442 5.36275548405 7.9734668235 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;97110054;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A97110055-97110108-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A97110055-97110108&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.773519872203 0.727419517528 0.952613802232 97762309 97762362 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;97762308;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A97110055-97110108-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A97762309-97762362&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGRPLPPSAGRNPPPAPACLVTAR Same 502242 chr13:97110055-97110108- 1453 1453 41 0 976 97110055 97110108 Best 1494 1494 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:97110055-97110108&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.796296296296 1.0 12.5038055556 0.9518 2.60366111111 9.90014444444 0.745836370196 0.991503312837 1892 Best 1892 1892 10.6396333333 0.3323 0.678644444444 9.96098888889 0.314806973823 0.771038967049 4484 Best 4484 4484 0.0 0.0 not annotated putative regulatory region 1497 498816 chr13:98395599-98395670+ NoOverlap chr13 98395599 98395670 + 9.47281674668 24 0.721608682383 4.14868747443 5.32412927225 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;98395598;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98395599-98395670%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A98395599-98395670&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.816651261584 0.726892988494 0.893936720777 99047853 99047924 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;99047852;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98395599-98395670%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A99047853-99047924&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SRSQTNDNYEGDLTSGVYLLSREEGR Same 500833 chr13:98395599-98395670+ 1477 1477 20 0 183 98395479 98396402 221 221;647;961;993;1497;3791;4580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:98395479-98396402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.403361344538 16.8733083333 0.9893 8.53018333333 8.343125 0.983193086776 0.946394618962 881 101 101;518;673;881;952;1128;1340 8.35617083333 0.8926 -6.72844583333 15.0846166667 0.563768030496 0.977630842673 3287 855 855;856;865;1168;1169;1303;3287 0.0 0.148844803347 chr2:241441304-241442533+ ENST00000319562.10 CDSintron coding exon(s) FARP1 alternative final exon 1499 501846 chr14:66492071-66492148+ NoOverlap chr14 66492071 66492148 + 5.727607711 26 0.819160049533 -2.028799974 7.756407685 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;66492070;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A66492071-66492148%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A66492071-66492148&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.611555754849 0.726521284735 1.05145805828 66958789 66958866 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;66958788;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A66492071-66492148%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A66958789-66958866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VIELRIEALKNYQKANDLKLSLYLQQNFEPMQAFLNLPGSQGR Same 503746 chr14:66492071-66492148+ 1454 1454 45 0 255 66486676 66492148 330 330;1499;2685;2943;57197 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:66486676-66492148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.423076923077 0.0 4.56679230769 0.9921 -5.91504230769 10.4818346154 0.653796081131 1.06966946016 2288 675 675;2288;2597;2857;39601 3.82003846154 0.3489 -8.30271923077 12.1227576923 0.362200878115 0.914104389613 4165 2915 2915;4165;4450;4700;22191 0.0 0.0 ENST00000359454.10,ENST00000432289.5,ENST00000556361.1 NC,NCintron,AntiNCintron protein-coding gene protein-coding gene ENSG00000196553 1501 479442 chr10:128537129-128537164+ NoOverlap chr10 128537129 128537164 + 5.84776672721 12 0.921966633605 -8.10035003225 13.9481167595 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;128537128;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A128537129-128537164%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A128537129-128537164&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0781110039736 0.72636981599 0.975494187809 130335393 130335428 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;130335392;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A128537129-128537164%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A130335393-130335428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSHLMNVK*QGYYFYILALWAF Same 481347 chr10:128537129-128537164+ 1471 1471 30 5 808 128537129 128539816 1257 1257;1501 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:128537129-128539816&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.305555555556 0.0 1.2334 0.9995 -11.3078166667 12.5412166667 0.210401592128 1.04717894348 8359 3954 3954;8359 -2.10468333333 0.9356 -15.4024333333 13.29775 0.0862278311631 0.858628543715 12994 4210 4210;12994 0.0 0.0 not annotated putative regulatory region 1504 475094 chr1:182390586-182390642- NoOverlap chr1 182390586 182390642 - 10.4126474293 19 0.726943818691 -1.8447736439 12.2574210732 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;182390585;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A182390586-182390642-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A182390586-182390642&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.701493075485 0.725512119728 1.01809387913 182359721 182359777 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;182359720;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A182390586-182390642-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A182359721-182359777&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLSPSPSPSPRKLRCLDQLESEK Same 476975 chr1:182390586-182390642- 1556 1556 -52 0 584 182390538 182400521 892 892;1504;2032;4516 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:182390538-182400521&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.59649122807 0.450592885375 14.4186052632 0.8884 8.23232631579 6.18627894737 0.648169148374 0.784486234347 2315 515 515;2315;3190;6985 14.7685052632 0.3188 5.75792105263 9.01058421053 0.38226364193 0.728889502018 4050 2130 2130;3443;4050;6413 0.0 0.0 ENST00000311223.9,ENST00000480604.5,ENST00000331872.10,ENST00000462444.1 UTR5,NC,UTR5intron,NCintron coding exon(s) GLUL first exon 1505 551739 chr3:28576332-28576517+ NoOverlap chr3 28576332 28576517 + 4.27392736654 62 0.763131249739 -0.816872524638 5.09079989118 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;28576331;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576332-28576517%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A28576332-28576517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.634453462423 0.72547411939 1.01777775202 28617823 28618008 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;28617822;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576332-28576517%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A28617823-28618008&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MEMDVEGVSPRPEPIPRSQGAGGACQAPPQPPQPQPPPQQLAQDELPGESAGAEDSDDPETRPNGEKGESKVGPQCWR Same 552676 chr3:28576332-28576517+ 1445 1445 60 0 983 28576036 28576517 Best 1505 1505;5038;5448;7957;10074;23556 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:28576036-28576517&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.704301075269 0.737406716418 5.18248064516 0.88 0.478388709677 4.70409193548 0.633479225151 0.905735888655 2378 Best 2378 2378;7891;9594;33970;37362;68747 6.84447741935 0.489 -3.69100645161 10.535483871 0.668845993204 0.92540982482 2933 Best 2933 2933;5925;8065;10942;38452;44104 0.0 0.0 ENST00000432518.6 NC redundant PhyloCSF signals are accounted for elsewhere on the list 1508 610187 chr1:178037720-178037779- Extension chr1 178037720 178037779 - 9.73898004591 20 0.721283283742 0.166064731032 9.57291531488 chr1:178037714-178037779- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;178037719;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A178037720-178037779-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A178037720-178037779&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.703030281576 0.724692221684 1.04944340078 178006855 178006914 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;178006854;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A178037720-178037779-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A178006855-178006914&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGQGSGRHYRAAICAELKKPLTIEEVAPAPSGLTR Same 610905 chr1:178037720-178037779- 1548 1548 -40 0 986 178037720 178037779 Best 1508 1508 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:178037720-178037779&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.928792569659 11.1807 0.9166 -7.099625 18.280325 0.819387372943 0.980012545659 1600 Best 1600 1600 17.37324 0.4169 -9.4382 26.81144 0.809818174128 1.05607498536 2442 Best 2442 2442 0.0 0.0 ENST00000464428.2,ENST00000462729.1 NC,NCintron pseudogene extension quinone oxidoreductase-like protein pseudogene extended (ENSG00000242193) 1510 505776 chr14:105584148-105584318- NoOverlap chr14 105584148 105584318 - 6.94158244081 57 0.467409540101 2.87684554463 4.06473689618 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105584147;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105584148-105584318-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105584148-105584318&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.686092096297 0.724041609571 0.944371384691 106050485 106050655 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106050484;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105584148-105584318-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106050485-106050655&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSHESGSLGLAGSCCVADWQMPPPYVVLDLPQETLEEETPGANLWPTTITFLTLFLLSLFYSTALTVTSVRGPSGKREGPQY*AGAGK Same 507625 chr14:105584148-105584318- 1587 1587 -77 2 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.654970760234 0.387755102041 16.0760508772 0.921 5.42316491228 10.6528859649 1.02124907011 1.03747441259 563 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 11.6096052632 0.4662 -3.15019122807 14.7597964912 0.922174927074 1.01269511829 1998 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0950354684383 chr11:6456297-6457029- immunoglobulin segment overlaps an immunoglobulin region 1512 468535 chr1:202826141-202826191+ NoOverlap chr1 202826141 202826191 + 10.0026943368 17 0.843567200284 -16.1413115263 26.1440058631 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;202826140;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A202826141-202826191%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A202826141-202826191&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.667697728913 0.723784993981 1.13816675768 202795269 202795319 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;202795268;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A202826141-202826191%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A202795269-202795319&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQVELGYQPEGVPQHCTSFALLGHLSEGQMDQK Same 470407 chr1:202826141-202826191+ 1510 1510 2 0 315 202825246 202828148 422 422;1273;1512;62190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:202825246-202828148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.588235294118 0.461538461538 11.4542941176 0.9381 -15.2717058824 26.726 0.708431055424 1.01279445172 2051 959 959;1457;2051;22050 35.2819470588 0.9758 -23.6213588235 58.9033058824 0.937657412865 1.01192040997 1898 1340 1340;1481;1898;14788 0.0 0.314608574627 chr12:85979289-85980430- ENST00000330493.6 NC pseudogene unitary pseudogene ENSG00000184774 1516 509839 chr15:89333090-89333260- NoOverlap chr15 89333090 89333260 - 5.73560174202 57 0.646068325617 1.5511368534 4.18446488861 ENST00000268124.9,ENST00000442287.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;89333089;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89333090-89333260-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A89333090-89333260&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.750155981878 0.723091151239 0.952431985672 89876321 89876491 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;89876320;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89333090-89333260-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A89876321-89876491&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQPGPALPPPGPEAEPALPGGGQLAVAGPAAPEAPGLGLGGGLDPVRPRGGGRTRGHPRGAGPGVRRGGLLGRGNLPHIGGGHIPLGLVSR Same 511574 chr15:89333090-89333260- 1522 1522 -6 0 569 89330211 89335145 867 867;1516;6244;11372;42877;43590;44649;44946 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:89330211-89335145&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.713450292398 0.603256445047 4.99502982456 0.9661 -1.18532631579 6.18035614035 0.744309334647 0.992805238666 1902 991 991;1902;3329;4879;5570;8149;31414;32743 -23.5036666667 0.9696 -36.3897701754 12.8861035088 0.0361472412459 0.812311097559 21990 1954 1954;9286;12402;21990;33671;37713;45376;71871 0.0 0.0 ENST00000268124.9,ENST00000631044.2 CDS,NC under investigation POLG contains a series of NPRs in the first and second coding exon that are out of frame to the annotated CDS (the POLG CDS is conserved in vertebrates). These NPRs in combination find a prospective alternative CDS with a STOP codon conserved in therian mamamls - found precisely at the terminus of the most 3' NPR - although no ATG initiation codon has been identified. However, a potential non-ATG initiation codon [CTG] at chr15:89333809 corresponds well with the beginning of the NPR series, creating a predicted 261aa CDS that is conserved in therian mammals. We have identified additional support for the translation of this alternative CDS within the mass spectrometry datasets provided by Pandey et al, specifically peptides [AAAAQPJGHPDAJER] and [AAAAAAAAAAAAAAATAASAAASAJJGGR] in CD8 cells. However, at the present time there is no evidence to suggest how this alternative CDS may be transcribed and translated, and it is unclear how to construct a transcript model. 1518 548921 chr22:41972042-41972089+ NoOverlap chr22 41972042 41972089 + 7.09181884304 16 0.742107270924 -12.7556310371 19.8474498801 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;41972041;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41972042-41972089%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A41972042-41972089&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.364089777067 0.722652485628 1.03158791551 42368046 42368093 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;42368045;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41972042-41972089%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A42368046-42368093&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MLATEKPLVSSYLALPFQSRLAQSAPVLAEPGSLGQGHLVSVTDHMPTR Same 550293 chr22:41972042-41972089+ 1101 1101 417 0 449 41971511 41976889 643 643;1518;1625;1678;2356;48456;54626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:41971511-41976889&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.520833333333 0.352941176471 18.3486625 0.9872 -10.5137625 28.862425 0.788930783912 1.00281678138 1705 797 797;1243;1705;1853;3195;37930;49782 19.009375 0.4063 -13.8918875 32.9012625 0.671713349459 1.01894612783 2926 2758 2758;2926;3000;4195;4636;26254;61260 0.0 0.0401777407726 chr5:176577637-176577798+ coding exon(s) SEPT3 alternative first exon 1519 585799 chr8:9555901-9556023- NoOverlap chr8 9555901 9556023 - 6.98677320597 41 0.875001814335 4.99034626818 1.99642693778 ENST00000310430.10,ENST00000520408.5,ENST00000522110.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;9555900;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A9555901-9556023-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A9555901-9556023&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.00225992154 0.722462083679 0.655392128488 9413411 9413533 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;9413410;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A9555901-9556023-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A9413411-9413533&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRR*SPWGGLELLLMMVVMMLRATRRRHLRTPLALSLRQRPPPPALTSDCR Same 586736 chr8:9555901-9556023- 1519 1519 0 4 992 9555878 9556023 Best 1519 1519;17103 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:9555878-9556023&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.886486486486 0.731851219512 0.9441 -2.19235853659 2.9242097561 0.179181228044 0.688050673791 9756 Best 9756 9756;10018 -5.22169756098 0.6387 -8.29417073171 3.07247317073 0.0589213026936 0.60260621953 17041 Best 17041 17041;24446 0.0 0.0 ENST00000607598.2,ENST00000310430.10 NC,AntiCDS not annotated putative regulatory region 1525 581240 chr7:57196334-57196531- NoOverlap chr7 57196334 57196531 - 6.14353786093 66 0.342102184583 0.154525721135 5.98901213979 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57196333;198;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57196334-57196531-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57196334-57196531&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.469486985172 0.71982457444 1.04904174022 57264041 57264238 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57264040;198;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57196334-57196531-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57264041-57264238&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSFVMGFVGFPSKPSPIYGGLGLILSGAVGCVVLNYGGAFMGLIVFFIYLGGMMVVFGYTAVMAIEEYPEA Same 582194 chr7:57196334-57196531- 1618 1618 -93 0 998 57196059 57196531 Best 1525 1525;56634 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57196059-57196531&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.39898989899 0.173684210526 21.9647121212 0.7918 3.78263333333 18.1820787879 0.983862032166 0.958980952142 878 Best 878 878;1952 45.0948454545 0.9026 13.702080303 31.3927651515 0.970299335316 0.99820774595 1575 1490 1490;1575 0.849807835555 chrM:14149-14673- 0.965466185818 chrM:14149-14673- pseudogene mitochondrial pseudogene region (ENSG00000284572) 1526 530324 chr19:15440508-15440711- NoOverlap chr19 15440508 15440711 - 3.61755297771 68 0.83635282449 -2.00730872351 5.62486170123 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15440507;204;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15440508-15440711-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15440508-15440711&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.568272208674 0.719708971591 1.04403296078 15551319 15551522 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15551318;204;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15440508-15440711-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15551319-15551522&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQPMANLSPLALPCSCWDGGSLDFRPGSPPPHLLGHFPGTPDGRGPWEHPLVQEAGEGILSERRFEDSVIVRTMKPHAELEGSR Same 531787 chr19:15440508-15440711- 1396 1396 130 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.637254901961 0.289704142012 3.81631764706 0.987 -8.83856029412 12.6548779412 0.929022009196 1.0551395828 1195 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -1.98842794118 0.4562 -16.2041970588 14.2157691176 0.50533163612 1.03948329493 3513 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.0453465215963 chr12:47982848-47982946- ENST00000263381.11 CDSintron coding exon(s) WIZ 2 cassette exons 1528 490589 chr12:7626289-7626372+ NoOverlap chr12 7626289 7626372 + 7.60853580492 28 0.452544441901 -5.98770000466 13.5962358096 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;7626288;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7626289-7626372%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A7626289-7626372&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.351346752299 0.719046354059 0.936474230164 7778885 7778968 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;7778884;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7626289-7626372%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A7778885-7778968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FIIPTFVAIIALLSLYFYV*LIYSTPLKILPTTNNIK Same 492565 chr12:7626289-7626372+ 1591 1591 -63 13 1000 7620539 7637633 Best 1528 1528;3369;23912;30341;31797;32931;38172;38567;44054;46877;50926 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:7620539-7637633&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.309523809524 0.0 -0.25965 0.104 -2.65275714286 2.39310714286 0.0212162731995 0.568447681701 32126 27370 27370;27482;29856;29976;30397;31757;32126;32399;32690;35677;37405 30.2570178571 0.6133 -12.0249464286 42.2819642857 1.02636358879 0.935308202757 676 310 310;676;714;1056;1511;1634;1765;1772;2213;2416;4434 0.0 0.790405492061 chrM:4470-5511+ pseudogene mitochondrial protein pseudogene region (ENSG00000284591) 1532 479194 chr10:121951702-121951755+ NoOverlap chr10 121951702 121951755 + 10.0195609927 18 0.76172952536 -7.1742833919 17.1938443846 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;121951701;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A121951702-121951755%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A121951702-121951755&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.670643770962 0.718287525351 0.973855525041 123711217 123711270 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;123711216;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A121951702-121951755%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A123711217-123711270&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAWTKEQMKGHQDRMI*GR Same 481099 chr10:121951702-121951755+ 1395 1395 137 2 763 121951540 121951927 1171 1171;1532;3401;23742 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:121951540-121951927&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.333333333333 18.5745055556 0.9243 -5.10672222222 23.6812277778 0.844025337877 0.966532687902 1494 Best 1494 1494;1612;3896;22772 19.8002555556 0.3315 -5.41289444444 25.21315 0.663258205274 1.0549515112 2954 2854 2854;2954;4862;25178 0.0 0.0 ENST00000437593.1 NC pseudogene unitary pseudogene ENSG00000226864 1534 505844 chr14:105855994-105856053- NoOverlap chr14 105855994 105856053 - 8.02714017704 20 0.662507820249 -5.81638511419 13.8435252912 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105855993;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105855994-105856053-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105855994-105856053&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.519807365433 0.718053815403 0.965404453914 106322099 106322158 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106322098;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105855994-105856053-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106322099-106322158&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFPSVLRGGKYAATSQVLLPSK None NA NA 0 63 105837465 105856215 70 70;297;303;618;1534;1768;2725;3071;4703;4966;9883;19584;21248 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105837465-105856215&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.616666666667 0.178571428571 13.11244 0.806 -9.45699 22.56943 0.754479420999 0.958211619003 1848 171 171;488;606;760;1848;2075;2155;2623;3063;3220;4742;9758;24097 20.051395 0.5255 -13.070585 33.12198 0.924634562005 1.00481855727 1980 30 30;154;1395;1760;1980;1989;2291;2612;2659;3437;3454;6249;20954 0.0 0.0 ENST00000390559.6,ENST00000612473.1 NC,NCintron coding exon(s) IGHM alternative final coding exons 1538 530319 chr19:15439209-15439271- NoOverlap chr19 15439209 15439271 - 8.65599523272 21 0.795724567389 1.08889047872 7.56710475399 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15439208;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15439209-15439271-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15439209-15439271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.738379459789 0.716854931312 1.02029995686 15550020 15550082 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15550019;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15439209-15439271-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15550020-15550082&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DFPLSKPLLHGTGQRPLGRLAFPSTLASTPYSLQLGR Same 531782 chr19:15439209-15439271- 1508 1508 30 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.619047619048 0.409090909091 12.5218619048 0.9543 1.82175238095 10.7001095238 0.83985527375 1.0305358882 1511 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 18.4845714286 0.6647 -1.15676190476 19.6413333333 0.934618536587 1.01872933196 1917 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.0 ENST00000263381.11 CDSintron coding exon(s) WIZ 2 cassette exons 1546 541869 chr2:218010106-218010216- NoOverlap chr2 218010106 218010216 - 7.08272161033 37 0.62990025961 2.340591893 4.74212971732 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;218010105;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A218010106-218010216-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A218010106-218010216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.744613528296 0.715451934039 0.937001659644 218874829 218874939 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;218874828;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A218010106-218010216-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A218874829-218874939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSAPGAAGPPLPTLAPQAPTLGVSMTRLSWCFSCVIRWGKYLFSCLLPLRFCLR Same 543243 chr2:218010106-218010216- 1565 1565 -19 0 1012 218010106 218010282 Best 1546 1546;67488 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:218010106-218010282&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.648648648649 0.698662470496 10.3521135135 0.9939 4.43510810811 5.91700540541 0.932937505387 0.913853989854 1177 Best 1177 1177;37085 10.9324027027 0.5024 3.34532702703 7.58707567568 0.618129821462 0.785188349275 3103 Best 3103 3103;52033 0.0 0.0 coding exon(s) TNS1 alternative first exon 1547 505811 chr14:105707189-105707299- NoOverlap chr14 105707189 105707299 - 6.5154107648 37 0.556764592471 0.448632551206 6.06677821359 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105707188;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105707189-105707299-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105707189-105707299&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.552120077184 0.715434658615 1.0220297181 106173526 106173636 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106173525;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105707189-105707299-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106173526-106173636&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDTFSCMVGHEALPLAFTQKTIDRLAGKPTHVNVSVVMAEVDGTCY None NA NA 0 543 105704391 105719646 823 823;838;1248;1547;1711;2216;9225;18253;35962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105704391-105719646&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.603603603604 0.594642857143 9.72154864865 0.8965 -3.7421027027 13.4636513514 1.01165246807 1.03002207257 641 94 94;95;219;285;641;1432;1674;1887;5574 8.91922162162 0.5753 -12.2637540541 21.1829756757 0.959434616858 1.07994303492 1709 51 51;686;1709;1746;1937;2386;2922;3268;6181 0.0 0.103822509987 chr17:55720683-55721070- ENST00000390547.3,ENST00000618756.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 1549 505801 chr14:105625842-105626006- NoOverlap chr14 105625842 105626006 - 4.69836548458 55 0.442983832373 -1.98155092489 6.67991640947 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105625841;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105625842-105626006-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105625842-105626006&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.320391060985 0.715313709528 1.0645884943 106092179 106092343 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106092178;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105625842-105626006-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106092179-106092343&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTK None NA NA 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.660606060606 0.626293995859 12.3078654545 0.7462 -0.958667272727 13.2665327273 1.10959175093 1.00135503217 14 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 12.1560781818 0.532 -9.43228181818 21.58836 1.04349998066 1.061412354 423 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.0955756755587 chr16:67661896-67662647+ ENST00000390543.3 NC immunoglobulin segment overlaps an immunoglobulin region 1550 468012 chr1:173635798-173635848+ NoOverlap chr1 173635798 173635848 + 6.89070006679 17 0.861220093439 -4.65472940136 11.5454294682 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;173635797;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A173635798-173635848%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A173635798-173635848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.460168227043 0.715267573272 1.02495565214 173604937 173604987 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;173604936;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A173635798-173635848%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A173604937-173604987&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LCCDFANMDIFQGCLYLIYNLLQAVFFVLFVLSVHYLWKKWKKHQKKVNS Same 469878 chr1:173635798-173635848+ 1499 1499 51 0 1014 173635609 173636934 Best 1550 1550;3537;17642 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:173635609-173636934&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.392156862745 0.0 5.80587647059 0.9554 -6.01897058824 11.8248470588 0.501394102981 1.05248177449 3137 1682 1682;3137;3671 6.47994117647 0.4113 -10.5646294118 17.0445705882 0.422690531567 0.994156162757 3847 3453 3453;3847;5448 0.0 0.0 ENST00000417563.1,ENST00000333279.2 NC,AntiCDSintron protein-coding gene protein coding gene ENSG00000232113 1552 527005 chr19:6412270-6412332+ NoOverlap chr19 6412270 6412332 + 11.2363858727 21 0.877095118203 7.65800474371 3.57838112896 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;6412269;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6412270-6412332%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A6412270-6412332&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.858468778298 0.714955561491 0.658350668768 6412281 6412343 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;6412280;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6412270-6412332%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A6412281-6412343&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPAEAAPENIFAKCCSVIESLQ Same 528451 chr19:6412270-6412332+ 1521 1521 31 0 18 6396383 6424885 18 18;152;1552;1681;2470;11355;12316;12885;15770;20124;36825 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:6396383-6424885&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52380952381 0.231617647059 14.7285380952 0.887 6.53387142857 8.19466666667 0.757860472053 0.927929206738 1830 228 228;1347;1830;2200;3049;3131;9882;24431;37923;50538;67562 21.7594095238 0.4223 8.10534761905 13.6540619048 0.762127079215 0.874981231993 2594 237 237;2087;2298;2594;2633;2795;14442;22727;50962;60088;60354 0.0 0.0 ENST00000596254.1 NC pseudogene unitary pseudogene ENSG00000214347 1553 614200 chr10:122802335-122802385+ Extension chr10 122802335 122802385 + 10.2119999493 17 0.792234055444 -5.28158236952 15.4935823188 chr10:122802335-122802481+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122802334;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122802335-122802385%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122802335-122802385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.654060810734 0.714644823439 0.970849492044 124561851 124561901 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124561850;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122802335-122802385%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124561851-124561901&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADHIPVITSGSPPALPIVKLADERSQCKGHIEVYHNGTWGTVCDNLWGVNAAHMVCQQLGCGK Same 614909 chr10:122802335-122802385+ 1506 1506 47 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.549019607843 0.0 18.3736823529 0.847 -3.68345882353 22.0571411765 0.719458953375 0.96899704428 2011 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 44.7249352941 0.7831 -3.63022352941 48.3551588235 1.03774577062 0.980473591053 512 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.114308530818 chr10:122601797-122602120+ 0.152759629615 chr10:122601797-122602120+ pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 1554 489039 chr11:76713051-76713113- NoOverlap chr11 76713051 76713113 - 7.24594762212 21 0.831692988479 -1.39413818007 8.64008580219 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;76713050;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76713051-76713113-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A76713051-76713113&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.649998411312 0.714569684941 1.05198663754 76424095 76424157 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;76424094;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76713051-76713113-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A76424095-76424157&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KEVLHLDWTFKASLLLDLICMR Same 491028 chr11:76713051-76713113- 1511 1511 43 0 85 76712306 76719866 98 98;1554;2355;2775;9069;9723;10637;30796 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:76712306-76719866&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.539682539683 0.0 10.2707333333 0.98 -2.83364761905 13.1043809524 0.84783738956 1.05464870599 1479 88 88;186;1371;1479;2258;2338;2434;2689 32.2363428571 0.9288 -2.0816 34.3179428571 0.995343087786 1.03066189071 1187 838 838;995;1128;1187;1347;1571;1780;2549 0.0 0.419730140473 chrX:109408992-109409168- ENST00000525328.1 NC pseudogene extension GUCY2EP extended [ENSG00000204529] 1558 491115 chr12:40567598-40567642+ NoOverlap chr12 40567598 40567642 + 9.13636640708 15 0.922091503268 -3.68159990311 12.8179663102 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40567597;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40567598-40567642%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40567598-40567642&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.539107591109 0.713665784551 1.01033261129 40961400 40961444 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40961399;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40567598-40567642%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40961400-40961444&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VNNYFVFFPLFSSQIGASFDDPSNPCVSYSCK Same 493092 chr12:40567598-40567642+ 1488 1488 70 0 19 40565645 40570604 19 19;175;252;1193;1558 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40565645-40570604&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.3515625 13.44544 0.9437 -5.27311333333 18.7185533333 0.754529385873 0.99117950816 1847 121 121;362;478;1515;1847 14.2571733333 0.3863 -9.11929333333 23.3764666667 0.567966896805 1.05191983065 3273 12 12;169;2094;3099;3273 0.0 0.0 ENST00000454784.8 NC known assembly issue MUC19 has a known sequence error; the CDS cannot yet be annotated 1561 502306 chr14:80211350-80211457+ NoOverlap chr14 80211350 80211457 + 5.00922494133 36 0.897854411977 -0.587908225755 5.59713316709 ENST00000422005.7,ENST00000438257.8,ENST00000553594.1,ENST00000553968.1,ENST00000554188.5,ENST00000555750.1,ENST00000557010.5,ENST00000557125.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;80211349;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A80211350-80211457%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A80211350-80211457&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.710415164352 0.713484159696 0.998106981538 80677693 80677800 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;80677692;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A80211350-80211457%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A80677693-80677800&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQHAPPLSASGLGAAQQQHHVLEQNDRVIESQEEAVGEKNWQNLQCDQQVYAEDAHLLCLLSQFPCALWFPFTLLFK Same 504207 chr14:80211350-80211457+ 1538 1538 23 0 1021 80211350 80211457 Best 1561 1561 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:80211350-80211457&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.490740740741 0.316715542522 -1.46201666667 0.9913 -7.22550555556 5.76348888889 0.180651381435 0.878005714785 9678 Best 9678 9678 -18.4492027778 0.9336 -31.5772666667 13.1280638889 0.0361716991379 0.830351355875 21981 Best 21981 21981 0.0 0.0 ENST00000553979.1,ENST00000422005.7 NC,AntiCDS not annotated putative regulatory region 1565 546735 chr21:35072749-35072784+ NoOverlap chr21 35072749 35072784 + 5.86137489229 12 0.809877673508 -10.1252166132 15.9865915055 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;35072748;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A35072749-35072784%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A35072749-35072784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0783288841564 0.712439976294 0.945279113631 36445046 36445081 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;36445045;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A35072749-35072784%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A36445046-36445081&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GIWGDPKAGLSGQQQQQCGGR Same 548151 chr21:35072749-35072784+ 1345 1345 220 0 1025 35072749 35072925 Best 1565 1565;25404 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:35072749-35072925&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.36 3.46009166667 0.9299 -7.44159166667 10.9016833333 0.195874719516 1.01257818444 8955 Best 8955 8955;36340 1.91095833333 0.4107 -8.714575 10.6255333333 0.101016330173 0.765778349938 11411 Best 11411 11411;35503 0.0 0.0 ENST00000475045.6 AntiUTR5intron not annotated putative regulatory region 1566 495285 chr12:51814417-51814629- NoOverlap chr12 51814417 51814629 - 6.33212534139 71 0.44925010504 2.65502814151 3.67709719988 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;51814416;213;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51814417-51814629-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A51814417-51814629&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.689134431778 0.712227053009 0.926767490018 52208201 52208413 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52208200;213;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51814417-51814629-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52208201-52208413&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RREAAEDPAGRVAGPGEVSDGCREALAAWLAPQAASLSWDRLARALRRSGRPDVARELGKNLHQQATLQLR Same 497283 chr12:51814417-51814629- 1589 1589 -23 0 145 51807534 51814833 173 173;1274;1566;23248;41728 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:51807534-51814833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.788732394366 0.759954331383 7.6791971831 0.6541 0.648114084507 7.03108309859 0.839410341223 1.02548931922 1512 290 290;1358;1512;2640;66049 10.5240464789 0.4322 -5.23927746479 15.7633239437 0.871967093029 1.03344511428 2228 69 69;2037;2228;5219;35256 0.0 0.233566642446 chr1:156676482-156677264- protein-coding gene protein-coding gene ENSG00000284730 1568 543853 chr20:50233512-50233541+ NoOverlap chr20 50233512 50233541 + 6.90631997585 10 0.874401464866 -9.59603999853 16.5023599744 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;50233511;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A50233512-50233541%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A50233512-50233541&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0821563635075 0.711824362 0.952360667171 48850049 48850078 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;48850048;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A50233512-50233541%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A48850049-48850078&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSLTATLPSLLVEAEAQRGKAIFLVPHS Same 545244 chr20:50233512-50233541+ 1455 1455 113 0 1027 50233512 50243267 Best 1568 1568;65893 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:50233512-50243267&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.416666666667 1.06427 0.9504 -15.06937 16.13364 0.166028171576 1.0370938717 10528 Best 10528 10528;72532 -0.17322 0.3613 -16.45362 16.2804 0.0899099036991 0.935221379586 12572 Best 12572 12572;41035 0.0 0.0 not annotated low complexity region 1572 579970 chr7:152163143-152163178+ NoOverlap chr7 152163143 152163178 + 6.43028342724 12 0.80257368836 -10.5636916558 16.993975083 ENST00000262189.10,ENST00000355193.6,ENST00000360104.7,ENST00000424877.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;152163142;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A152163143-152163178%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A152163143-152163178&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.138410061324 0.711556827958 0.949587508788 151860228 151860263 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;151860227;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A152163143-152163178%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A151860228-151860263&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLPHLLLVLWRLLKGS Same 580939 chr7:152163143-152163178+ 1318 1318 254 0 397 152163143 152176287 555 555;1572;3794;66217 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:152163143-152176287&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.0 0.746475 0.9237 -21.336825 22.0833 0.2931782987 0.949216473981 5783 2815 2815;5783;19575;57298 -11.16705 0.8469 -45.7333166667 34.5662666667 0.176457587007 0.989669811869 6920 4389 4389;6920;21646;46222 0.0 0.0 ENST00000262189.10,ENST00000473186.5 AntiCDS,AntiNC not annotated potentially spurious 1578 651337 chr16:71431505-71431561- Extension chr16 71431505 71431561 - 9.4337104308 19 0.888672585561 1.34761060539 8.08609982541 chr16:71431457-71431561- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;71431504;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A71431505-71431561-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A71431505-71431561&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.737818085354 0.710503943884 1.02313692608 71465408 71465464 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;71465407;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A71431505-71431561-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A71465408-71465464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KHEVPVYGSRCVDITGNIFWTGGEDTILYSWDLR Same 651963 chr16:71431505-71431561- 1507 1507 71 0 1 71430668 71432325 1 1;1232;1578;61319 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:71430668-71432325&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.491228070175 1.16326530612 12.9399315789 0.9228 -0.0756473684211 13.0155789474 0.790539370998 1.04825745928 1704 1080 1080;1161;1704;2373 44.1294105263 0.9623 14.7696 29.3598105263 0.992389329344 1.02927094645 1234 Best 1234 1234;1500;2160;2283 0.0 0.399040780238 chr19:3005438-3005584- ENST00000561754.1,ENST00000572770.2 NC,NCintron protein-coding gene protein-coding gene ENSG00000260734 1581 533062 chr2:38880184-38880234+ NoOverlap chr2 38880184 38880234 + 5.80071776755 17 0.804699778744 -6.52175311832 12.3224708859 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;38880183;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A38880184-38880234%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A38880184-38880234&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.305835577916 0.709915348262 0.999837476272 39107325 39107375 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;39107324;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A38880184-38880234%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A39107325-39107375&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TASEVYKISFIFPNGDKYGK Same 534444 chr2:38880184-38880234+ 1494 1494 87 0 522 38880184 38880706 778 778;1581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:38880184-38880706&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.352941176471 0.0 10.0830529412 0.9599 -6.51817058824 16.6012235294 0.74986830982 1.01412155117 1866 1518 1518;1866 14.6836235294 0.6791 -11.8289941176 26.5126176471 0.880315730682 1.06024787347 2192 Best 2192 2192;2316 0.0 0.0 ENST00000340556.10,ENST00000441049.5,ENST00000409077.2 UTR5,NC,UTR5intron coding exon(s) MORN2 upstream coding exons led to the usage of a [CTG] for initiation, supported by human and mouse RP and conservation. 1582 511802 chr16:54632967-54632996+ NoOverlap chr16 54632967 54632996 + 7.01090994477 10 0.871969176776 -9.64968993664 16.6605998814 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54632966;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54632967-54632996%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54632967-54632996&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0919211683159 0.709568037871 0.952450897498 54666879 54666908 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54666878;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54632967-54632996%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54666879-54666908&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGELNTPSAYPGRTVAPTSPQVFK Same 513443 chr16:54632967-54632996+ 1465 1465 117 0 1038 54632610 54632996 Best 1582 1582;10444 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54632610-54632996&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.7 0.612244897959 -6.07208 0.9846 -16.58045 10.50837 -0.00767959039607 0.966114590451 45691 Best 45691 45691;73644 -18.65843 0.7137 -25.77215 7.11372 -0.0278562245616 0.471396522002 55151 Best 55151 55151;70127 0.0 0.0 not annotated putative regulatory region 1583 479225 chr10:122624689-122624748+ NoOverlap chr10 122624689 122624748 + 10.1145099401 20 0.651764705882 -3.66349511743 13.7780050576 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122624688;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122624689-122624748%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122624689-122624748&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.654031092139 0.709565272047 0.983402398529 124384205 124384264 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124384204;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122624689-122624748%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124384205-124384264&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWAVAFPGNAWFDQGSGPIVLDDVCCSGNES Same 481130 chr10:122624689-122624748+ 1609 1609 -26 0 465 122624536 122624832 670 670;999;1583;8711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122624536-122624832&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.0 20.791905 0.8224 -6.04696 26.838865 0.749221092901 0.984460151804 1868 1100 1100;1284;1868;1940 51.328875 0.9318 -8.66786 59.996735 0.997400859842 0.980143791157 1148 507 507;1148;1284;1573 0.471710607437 chr10:122588944-122589267+ 0.250362834923 chr10:122613974-122614297+ ENST00000330163.8 CDSintron pseudo-exon DMBT1 pseudo_exon 1584 561227 chr4:17877610-17877696- NoOverlap chr4 17877610 17877696 - 7.74361378982 29 0.816155620976 4.1534172687 3.59019652112 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17877609;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17877610-17877696-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17877610-17877696&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.906545304409 0.709300219988 0.767749211717 17879233 17879319 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17879232;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17877610-17877696-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17879233-17879319&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DACRSRSPSPPPLSPIETEGFEKLKDVISEISALENNK Same 562218 chr4:17877610-17877696- 1530 1530 54 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.436781609195 0.504347826087 11.5935448276 1.0 6.12760689655 5.46593793103 0.887134178272 0.835878196737 1337 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 20.5785344828 0.7302 4.97760689655 15.6009275862 0.979231701826 0.967804173336 1438 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 1586 472217 chr1:46466695-46466784- NoOverlap chr1 46466695 46466784 - 9.45489669939 30 0.821154599324 8.08895997405 1.36593672534 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;46466694;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466695-46466784-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A46466695-46466784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01260778081 0.708985300053 0.493264219576 46932367 46932456 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;46932366;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466695-46466784-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A46932367-46932456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAPPADLHNRVSGRAPSRSRRRRRRRARFSRCHLGR Same 474095 chr1:46466695-46466784- 1590 1590 -4 0 1039 46448320 46466815 Best 1586 1586;4166;4364;6954;7001;12344;14948;21944;27913;29912;31134;37875;42326;63692;65303;68731;69308;69969;73272 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:46448320-46466815&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.744444444444 1.54285714286 0.58241 0.81 -0.564763333333 1.14717333333 0.0135653735696 0.4705256507 35285 4552 4552;6553;11146;21508;25219;29368;31194;34313;35285;35620;41616;45262;45465;48699;48843;51388;55674;57607;70045 -0.562543333333 0.3347 -1.31408333333 0.75154 0.0137949501144 0.476050248769 29223 11286 11286;13413;13817;24293;29223;30818;32582;34899;38187;38198;39757;43966;44176;46982;51189;51970;55751;61426;67777 0.0 0.0 ENST00000455247.1 AntiNCintron not annotated putative regulatory region 1588 491089 chr12:40422103-40422198+ NoOverlap chr12 40422103 40422198 + 4.14877499267 32 0.797476062409 -3.48140307399 7.63017806667 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40422102;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40422103-40422198%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40422103-40422198&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.435689836442 0.708553972471 1.06360256979 40815905 40816000 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40815904;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40422103-40422198%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40815905-40816000&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQDINEHIANSKIPGDCPNAVGKSYEVCEDGIQVR Same 493066 chr12:40422103-40422198+ 1546 1546 42 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.375 0.0 6.0355625 0.9755 -7.68654375 13.72210625 0.905139173338 1.04862419194 1281 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 7.295209375 0.3746 -8.36150625 15.656715625 0.666784282732 1.02119562104 2943 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 1589 548163 chr22:23037785-23037838+ NoOverlap chr22 23037785 23037838 + 10.1326444604 18 0.760906385901 -2.14545554461 12.278100005 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;23037784;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A23037785-23037838%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A23037785-23037838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.674864731473 0.708546773775 1.01864045861 23379962 23380015 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;23379961;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A23037785-23037838%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A23379962-23380015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPLLPPWLHQLCWSLCISQEETVDQDAETQGSR Same 549531 chr22:23037785-23037838+ 1621 1621 -32 0 1041 23034170 23037838 Best 1589 1589;13373 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:23034170-23037838&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.296703296703 15.0164111111 0.781 -0.00610555555556 15.0225166667 0.667033718077 1.03631960579 2217 Best 2217 2217;18221 18.7903888889 0.2841 0.157905555556 18.6324833333 0.556140870538 0.988312196467 3325 Best 3325 3325;6209 0.0 0.17695577742 chr22:32104786-32104891+ not annotated putative regulatory region 1590 534719 chr2:110269625-110269690+ NoOverlap chr2 110269625 110269690 + 9.1366545558 22 0.582406347753 -5.65315007893 14.7898046347 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110269624;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110269625-110269690%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110269625-110269690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.563876994503 0.707714667597 0.956557014404 111027202 111027267 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111027201;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110269625-110269690%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111027202-111027267&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFVSIDLQGFPKPPEHPAQYPLCLLLFMFSVLMFCLMALKLFGNR*AHFSGSFCLGILPYLG Same 536071 chr2:110269625-110269690+ 1552 1552 38 1 64 110261435 110272049 71 71;655;738;1590;1755;2806;2841;5622 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110261435-110272049&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.454545454545 0.315789473684 17.0949909091 0.772 -8.33749090909 25.4324818182 0.781289542767 0.989393252072 1749 39 39;230;616;725;1137;1749;1796;2218 37.8145727273 0.7873 -10.5728045455 48.3873772727 1.05250863984 0.963446819554 295 260 260;295;766;1197;1279;1318;1559;1820 0.0 0.0 ENST00000562613.2 NCintron pseudogene ion transport protein domain-containing transcribed unprocessed pseudogene (ENSG00000261760) 1591 572518 chr6:109261886-109261966+ NoOverlap chr6 109261886 109261966 + 7.49620731009 27 0.845335119204 3.07217042534 4.42403688475 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109261885;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109261886-109261966%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109261886-109261966&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.860219460145 0.707378573355 0.843699394038 109583089 109583169 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109583088;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109261886-109261966%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109583089-109583169&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GYFVFFQLFSAKVMGDPFLVGEIGLLAFKSAADEGQK Same 573545 chr6:109261886-109261966+ 1527 1527 64 0 198 109254451 109270128 241 241;379;398;784;1262;1279;1591;1821;4627;6101 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109254451-109270128&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.1875 14.8068925926 1.0 -0.360874074074 15.1677666667 1.0493807604 1.02678393411 267 103 103;138;267;470;609;712;856;2049;2971;3012 19.4935814815 0.7538 -1.88100740741 21.3745888889 1.00455615165 1.04796260186 1043 235 235;262;499;654;818;864;1043;1677;1862;2261 0.0 0.0 ENST00000453496.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 1592 556866 chr3:131050173-131050202- NoOverlap chr3 131050173 131050202 - 7.47871999443 10 0.955504692149 -7.69220991135 15.1709299058 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;131050172;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A131050173-131050202-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A131050173-131050202&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.125384059464 0.706753905051 0.968681415123 130769017 130769046 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;130769016;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A131050173-131050202-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A130769017-130769046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLFRCNKEL*IIDH Same 557835 chr3:131050173-131050202- 1570 1570 22 3 1042 131050173 131050202 Best 1592 1592 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:131050173-131050202&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.2 6.0 7.26394 1.0 -8.99884 16.26278 0.457495634319 1.02345152753 3445 Best 3445 3445 -2.50772 0.6655 -21.4958 18.98808 0.17369478675 0.997328534816 7016 Best 7016 7016 0.0 0.0 ENST00000356918.8,ENST00000506695.5 AntiCDSintron,AntiNCintron not annotated low complexity region 1593 517998 chr17:48294207-48294260+ NoOverlap chr17 48294207 48294260 + 4.88880000843 18 0.972890652154 -6.29994998044 11.1887499889 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48294206;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48294207-48294260%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48294207-48294260&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.200107214445 0.706596212869 1.02521121861 46371569 46371622 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46371568;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48294207-48294260%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46371569-46371622&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SNSRWTRCYLGKITSV*TLRLGSLCY Same 519399 chr17:48294207-48294260+ 1771 1771 -178 4 1043 48294084 48294260 Best 1593 1593;71968 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48294084-48294260&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.639053254438 0.5806 1.0 -8.32785 8.90845 0.228794349422 0.981640310404 7669 Best 7669 7669;36014 -0.755027777778 0.9203 -16.1185055556 15.3634777778 0.227065526975 0.968308328954 5612 Best 5612 5612;67311 0.0 0.0 ENST00000336915.10,ENST00000581400.2 AntiCDSintron,AntiNCintron not annotated putative regulatory region 1594 510829 chr16:19309003-19309068+ NoOverlap chr16 19309003 19309068 + 6.11376812783 22 0.732615465712 -3.76402282986 9.87779095769 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;19309002;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A19309003-19309068%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A19309003-19309068&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.466818615409 0.70630859836 1.04814394982 19320325 19320390 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;19320324;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A19309003-19309068%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A19320325-19320390&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MDFHPDSLLLSITALRSWNDNTCSRKFPFVCKIPSLTIH Same 512467 chr16:19309003-19309068+ 1592 1592 2 0 108 19307548 19309068 128 128;1594 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:19307548-19309068&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.248120300752 5.84401818182 0.825 -7.59815454545 13.4421727273 0.593087351098 1.06188343305 2581 302 302;2581 33.1708363636 0.7116 -2.18409545455 35.3549318182 1.05331165895 1.02345599683 287 Best 287 287;1398 0.0 0.0 ENST00000468219.1,ENST00000493231.5 NC,CDSintron coding exon(s) CLEC19A alternative final coding exons 1595 512316 chr16:72797459-72797515+ NoOverlap chr16 72797459 72797515 + 10.5879947135 19 0.693710472106 -2.742826272 13.3308209855 ENST00000268489.9,ENST00000397992.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72797458;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72797459-72797515%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72797459-72797515&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.681712095213 0.70592953509 0.998166296788 72831358 72831414 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72831357;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72797459-72797515%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72831358-72831414&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LCLLLLLLLLLLLLLLLLLLLPGCNHICQFLPIGLFGL Same 513960 chr16:72797459-72797515+ 1647 1647 -52 0 1044 72786749 72802320 Best 1595 1595;21079;37333;39725;51719;54149;65275;67341;70055 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72786749-72802320&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.438596491228 0.0 13.3817 0.6359 -5.21222631579 18.5939263158 0.616973463122 0.985022387041 2453 Best 2453 2453;8633;10458;20402;20517;20622;22628;49851;70811 16.0886578947 0.5929 -13.5230684211 29.6117263158 0.927667345946 1.03806634034 1956 Best 1956 1956;9416;10906;18989;19008;25678;39101;45598;59430 0.0 0.0 ENST00000268489.9 AntiCDS not annotated putative regulatory region 1601 483066 chr10:130110698-130110751- NoOverlap chr10 130110698 130110751 - 10.726261172 18 0.768596932937 -0.232166595757 10.9584277678 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;130110697;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A130110698-130110751-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A130110698-130110751&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.70145857949 0.703842978923 1.03933299679 131908962 131909015 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131908961;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A130110698-130110751-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131908962-131909015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PWGCMDSLALGRWRQRRAEDLQVPGDVVSPR Same 484995 chr10:130110698-130110751- 1641 1641 -40 0 1050 130110698 130110751 Best 1601 1601 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:130110698-130110751&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.722222222222 1.0 10.4210222222 0.8079 -1.72105555556 12.1420777778 0.572770844234 1.04735590216 2701 Best 2701 2701 10.4210222222 0.2525 -1.72105555556 12.1420777778 0.289174309315 0.849188458409 4739 Best 4739 4739 0.0 0.0 ENST00000456581.1 NC protein-coding gene protein coding gene ENSG00000237489 1604 531025 chr19:37829091-37829117- NoOverlap chr19 37829091 37829117 - 6.93130016575 9 0.816756101489 -17.8556554798 24.7869556455 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37829090;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37829091-37829117-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37829091-37829117&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0145429377403 0.703052119184 1.06308679019 38319731 38319757 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38319730;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37829091-37829117-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38319731-38319757&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTGIQTKTRLVHLLK Same 532492 chr19:37829091-37829117- 1500 1500 104 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.0 8.28885555556 0.9379 -25.6372 33.9260555556 0.245934361115 1.0831499015 7092 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 10.6086 0.447 -25.4250777778 36.0336777778 0.392687587372 0.980127819587 4006 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.169750044848 chr19:37892578-37895456- 0.463292481219 chr19:37892578-37895456- ENST00000592640.5 NCintron pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 1605 561228 chr4:17878042-17878083- NoOverlap chr4 17878042 17878083 - 4.75970712011 14 0.860990310521 -8.41672848804 13.1764356082 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17878041;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17878042-17878083-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17878042-17878083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0352565173984 0.702583116776 0.980396818921 17879665 17879706 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17879664;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17878042-17878083-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17879665-17879706&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLVQEQNAASLCCCNTSCVVSSESQKPLIEDDLCGLFCSCEYR Same 562219 chr4:17878042-17878083- 1516 1516 89 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.404761904762 0.0 3.54772142857 1.0 -12.1989571429 15.7466785714 0.442267443263 1.0371131518 3581 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 -4.26677142857 0.7449 -31.6810285714 27.4142571429 0.346047279953 1.08450009591 4255 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 1607 534694 chr2:109971920-109972024+ NoOverlap chr2 109971920 109972024 + 8.91410580703 35 0.385409323262 1.96580859167 6.94829721536 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;109971919;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109971920-109972024%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A109971920-109972024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.46284759171 0.702398252992 1.04383889012 110729497 110729601 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110729496;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109971920-109972024%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110729497-110729601&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FTCVVFTLCFWFLFSGLKTAEGSP*FENILEIAFELYVLVTTANSPDIMSAHP Same 536046 chr2:109971920-109972024+ 1810 1810 -203 9 674 109963466 109974092 1038 1038;1288;1607;3960;4614;5824;6691;9138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:109963466-109974092&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.495238095238 0.776627218935 14.2585771429 0.5401 4.75637428571 9.50220285714 0.782666655629 1.04044061659 1741 1343 1343;1741;2554;2750;2805;2859;2974;4366 37.8266885714 0.6849 9.72872285714 28.0979657143 0.993122563446 1.04885293494 1223 119 119;225;546;552;1151;1223;1320;1375 0.0 0.0 ENST00000454928.5 NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000186148) 1610 525062 chr18:78294329-78294424+ NoOverlap chr18 78294329 78294424 + 5.16789067909 32 0.920644979782 -0.959634264 6.12752494309 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;78294328;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A78294329-78294424%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A78294329-78294424&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.677159443258 0.702159571354 1.01355717405 76054329 76054424 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;76054328;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A78294329-78294424%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A76054329-76054424&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WAVTDEQMTRVNYY*IRYYCFVVTQLSQGKMMTVGISLK Same 526505 chr18:78294329-78294424+ 1628 1628 -18 15 1056 78294316 78294424 Best 1610 1610;19984 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:78294316-78294424&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4375 0.666666666667 0.256003125 0.9442 -2.6454125 2.901415625 0.106085540395 0.64162625317 15241 Best 15241 15241;25186 -3.456503125 0.8289 -6.72536875 3.268865625 0.0695548222425 0.587131639274 15254 Best 15254 15254;30287 0.0 0.0 not annotated putative regulatory region 1616 465593 chr1:55775123-55775155+ NoOverlap chr1 55775123 55775155 + 6.32034570521 11 0.907245954625 -8.20896369761 14.5293094028 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;55775122;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A55775123-55775155%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A55775123-55775155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0805311908129 0.701379862356 0.969773982364 56240796 56240828 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;56240795;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A55775123-55775155%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A56240796-56240828&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPFSSYTPPGSSISRPRQLLSTEPVWG Same 467453 chr1:55775123-55775155+ 1550 1550 66 0 1062 55775123 55775155 Best 1616 1616 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:55775123-55775155&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.636363636364 0.673469387755 1.15605454545 0.9882 -11.1753545455 12.3314090909 0.161531629782 1.03909631889 10811 Best 10811 10811 -8.02545454545 0.5158 -24.3331 16.3076454545 0.0528224291728 0.912259006075 18157 Best 18157 18157 0.0 0.0 not annotated putative regulatory region 1621 575993 chr6:108945218-108945244- NoOverlap chr6 108945218 108945244 - 7.98517780834 9 0.927933335029 -8.78576657507 16.7709443834 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108945217;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108945218-108945244-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108945218-108945244&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.106907508431 0.700677028944 0.956378646549 109266421 109266447 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109266420;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108945218-108945244-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109266421-109266447&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QTQMYFPEMLNVATLTSEAPPEAGSASQR Same 577031 chr6:108945218-108945244- 1575 1575 46 0 1067 108945218 108945244 Best 1621 1621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108945218-108945244&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.740740740741 0.27 0.9666 0.9501 -9.16677777778 10.1333777778 0.0292573534632 0.96465299542 28987 Best 28987 28987 0.624377777778 0.3187 -10.1057 10.7300777778 0.0128821809215 0.742261395093 29588 Best 29588 29588 0.0 0.0 ENST00000368972.7 AntiCDSintron not annotated potentially spurious 1622 548427 chr22:30968833-30968889+ NoOverlap chr22 30968833 30968889 + 6.20754737603 19 0.749505487225 -5.36945263336 11.5770000094 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30968832;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30968833-30968889%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30968833-30968889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.395147181267 0.700098356113 1.01576994015 31364819 31364875 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31364818;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30968833-30968889%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31364819-31364875&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALLEPCAAAASAAAAAASAAARAPPAR Same 549794 chr22:30968833-30968889+ 1585 1585 37 0 647 30968833 30969812 994 994;1622;7572;73310 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968833-30969812&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.877192982456 1.28645833333 6.06812631579 0.6423 -2.68159473684 8.74972105263 0.277488352489 0.978860441893 6148 1582 1582;6148;22372;52363 5.76025263158 0.2308 -3.05994736842 8.8202 0.147157870658 0.748294666975 8146 4480 4480;8146;20994;30822 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 1623 505789 chr14:105601093-105601188- NoOverlap chr14 105601093 105601188 - 3.77795305569 32 0.592505436027 -5.55494684586 9.33289990155 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105601092;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105601093-105601188-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105601093-105601188&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.158578710289 0.699934462437 1.05040448334 106067430 106067525 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106067429;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105601093-105601188-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106067430-106067525&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTINITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQK None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.787692307692 13.759378125 0.9667 -7.25561875 21.014996875 1.06721303843 0.941943867788 100 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 13.7448625 0.5626 -14.695096875 28.439959375 1.05441566415 1.01489544971 272 Best 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.158969428178 chr2:120970393-120970606+ ENST00000390541.2 NC immunoglobulin segment overlaps an immunoglobulin region 1625 548922 chr22:41972171-41972224+ NoOverlap chr22 41972171 41972224 + 6.41244993607 18 0.79616913778 -5.06551663412 11.4779665702 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;41972170;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41972171-41972224%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A41972171-41972224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.41892796176 0.699649130079 1.02218429159 42368175 42368228 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;42368174;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41972171-41972224%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A42368175-42368228&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAQSAPVLAEPGSLGQGHLVSVTDHMPTRASPGKGKPRARGIPRPR Same 550294 chr22:41972171-41972224+ 1571 1571 54 0 449 41971511 41976889 643 643;1518;1625;1678;2356;48456;54626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:41971511-41976889&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.685185185185 0.315789473684 8.44083888889 0.989 -6.87378333333 15.3146222222 0.753189252261 1.03310429491 1853 797 797;1243;1705;1853;3195;37930;49782 5.35861111111 0.3885 -9.4155 14.7741111111 0.356871741287 0.94582513433 4195 2758 2758;2926;3000;4195;4636;26254;61260 0.0 0.0533569196165 chr5:176577637-176577798+ coding exon(s) SEPT3 alternative first exon 1627 508191 chr15:30072627-30072707- NoOverlap chr15 30072627 30072707 - 6.90500363597 27 0.826394151839 1.61319992719 5.29180370878 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;30072626;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A30072627-30072707-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A30072627-30072707&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.792964942933 0.699545754769 0.926955068432 30364830 30364910 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;30364829;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A30072627-30072707-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A30364830-30364910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLFKGASAFCAFCSHLEEFCPYLLTCFFLYYK Same 509910 chr15:30072627-30072707- 1559 1559 68 0 1070 30072627 30072923 Best 1627 1627;3395;5136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:30072627-30072923&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.432098765432 0.0 5.46272222222 0.8422 -0.331455555556 5.79417777778 0.397954794431 0.86495427566 4036 Best 4036 4036;4615;6171 15.1651925926 0.7174 0.0228555555556 15.142337037 0.854936127563 0.967537777161 2299 1601 1601;2299;4479 0.0 0.0 ENST00000421447.1 NC pseudogene tight junction protein 1 (zona occludens 1) (TJP1) pseudogene (ENSG00000229389) 1628 496975 chr12:114441286-114441336- NoOverlap chr12 114441286 114441336 - 6.71639990105 17 0.87626459144 -4.45894710807 11.1753470091 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;114441285;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A114441286-114441336-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A114441286-114441336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.443935774132 0.699524102999 1.03290291422 114879091 114879141 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;114879090;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A114441286-114441336-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A114879091-114879141&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TWYNIRYYDVLYCIIILGARER Same 498983 chr12:114441286-114441336- 1573 1573 55 0 1071 114441286 114448738 Best 1628 1628;41584 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:114441286-114448738&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.372549019608 3.03571428571 -0.204711764706 0.9994 -7.6313 7.42658823529 0.130470040969 0.891109142563 13050 Best 13050 13050;69339 -0.204711764706 0.3124 -7.6313 7.42658823529 0.0585415459269 0.681199222121 17108 Best 17108 17108;53904 0.0 0.0 not annotated putative regulatory region 1629 486546 chr11:125954293-125954388+ NoOverlap chr11 125954293 125954388 + 6.80861879513 32 0.71721980621 1.91940001957 4.88921877556 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125954292;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125954293-125954388%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125954293-125954388&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.76765577345 0.699084610982 0.923938461494 125824188 125824283 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125824187;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125954293-125954388%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125824188-125824283&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGGLDPGVLYAFRILALNHHTAGHPSEVKIPGAS Same 488508 chr11:125954293-125954388+ 1610 1610 19 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.604166666667 0.229390681004 12.35754375 0.9459 3.703321875 8.654221875 0.970694899213 1.01701399243 961 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 31.7591875 0.7914 10.558040625 21.201146875 1.05271140989 1.03496083081 293 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0434567294906 chr19:38204127-38204208+ ENST00000524962.2 NCintron protein-coding gene protein-coding gene ENSG00000283703 1632 494073 chr12:2849453-2849512- NoOverlap chr12 2849453 2849512 - 6.28218493164 20 0.952523079271 -3.22668005526 9.5088649869 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2849452;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2849453-2849512-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2849453-2849512&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.504582866581 0.698476025711 1.05402751094 2958619 2958678 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2958618;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2849453-2849512-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2958619-2958678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HISAGGRFEPQGLQLMPNPFPNNFAR Same 496067 chr12:2849453-2849512- 1698 1698 -66 0 6 2849327 2855413 6 6;133;515;985;1632;2840;5109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2849327-2855413&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.616666666667 0.363636363636 5.261185 0.9999 -4.78622 10.047405 0.557780217879 1.03371914248 2776 26 26;270;287;599;1474;2001;2776 4.39057 0.4323 -10.406625 14.797195 0.405370564489 0.960749158938 3931 189 189;675;1206;2115;2904;3470;3931 0.0 0.0 ENST00000537710.5 AntiNCintron protein-coding gene protein-coding gene ENSG00000283297 1634 679674 chr2:131373653-131373799- Extension chr2 131373653 131373799 - 5.63538572496 49 0.31734530388 -4.63455307605 10.269938801 chr2:131373650-131373799- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131373652;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131373653-131373799-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131373653-131373799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.233426898725 0.698159521174 0.9717206518 132131226 132131372 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;132131225;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131373653-131373799-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A132131226-132131372&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCSYLAILAPPLLITLNIHFTLATVVPITLLVFAAGKAAVGLALLVSISNTYDLNYVHNLNLLQS Same 680261 chr2:131373653-131373799- 1809 1809 -175 0 643 131370351 131386316 988 988;1634;5892;16115;21323;24702;26053;30266;32713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131370351-131386316&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.394557823129 0.595141700405 22.6889040816 0.6349 -4.90664489796 27.5955489796 0.919351185716 1.08936434288 1235 Best 1235 1235;1643;1841;2007;2369;2922;4039;4272;46168 53.2275857143 0.7991 -2.5004877551 55.7280734694 1.01041409072 0.963857759751 939 Best 939 939;1359;1734;1945;2052;2301;2444;3194;23136 0.942405790921 chrM:10470-10766+ 0.977681720312 chrM:10470-10766+ pseudogene extension mitochondrial pseudogene region extended (e.g. ENSG00000284003) 1636 542160 chr2:227724476-227724592- NoOverlap chr2 227724476 227724592 - 5.19701023897 39 0.686565604991 -0.527030765055 5.72404100402 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227724475;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227724476-227724592-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227724476-227724592&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.587882362702 0.697346439227 1.01415182081 228589192 228589308 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228589191;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227724476-227724592-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228589192-228589308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCCGGCCSTPVICCCRRTCHSCGCGCGCGKGCCQQKGCCQQK Same 543537 chr2:227724476-227724592- 1659 1659 -23 0 1076 227724476 227728420 Best 1636 1636;2064;4852 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227724476-227728420&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.65811965812 0.402892561983 6.83434102564 0.8236 -2.08631794872 8.92065897436 0.761794884456 1.06080083304 1815 124 124;1815;5645 4.24152820513 0.5175 -4.90881538462 9.15034358974 0.481907078208 0.860163947306 3598 1783 1783;3598;6389 0.0 0.148087254423 chr6:17291756-17292119+ protein-coding gene protein coding gene ENSG00000284725 1638 496463 chr12:95405372-95405443- NoOverlap chr12 95405372 95405443 - 7.29518737396 24 0.779409221536 0.637974971905 6.65721240205 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;95405371;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95405372-95405443-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A95405372-95405443&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.713737018151 0.697286260987 1.00064871766 95799148 95799219 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;95799147;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95405372-95405443-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A95799148-95799219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IIIVNEYQFLNLDCIYPSGHLAVCQSYSDLPSGGVYTSVFSDLPNPVILGTFTPFGCGSISFPK Same 498465 chr12:95405372-95405443- 1594 1594 44 0 1078 95405372 95408124 Best 1638 1638;2059;7365;33136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:95405372-95408124&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.458333333333 0.270676691729 5.89785 0.9007 -4.215775 10.113625 0.584025520802 1.05138265185 2635 Best 2635 2635;6398;9658;12683 6.2248125 0.5941 -11.4107958333 17.6356083333 0.659754160223 1.03874090562 2962 Best 2962 2962;3484;3887;4565 0.0 0.0 ENST00000548194.1 NC pseudogene unitary pseudogene ENSG00000257943 1640 500671 chr14:21861937-21862005+ NoOverlap chr14 21861937 21862005 + 5.31901293734 23 0.946843538634 -3.5805782598 8.89959119714 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21861936;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21861937-21862005%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21861937-21862005&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.471873505459 0.696242189443 1.05780606774 22330112 22330180 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22330111;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21861937-21862005%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22330112-22330180&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSEELCGTLHITAAQLKDSGTYFCAVEAQFSQEICSLDPNCSWACSPNPFR Different 502658 chr14:21861940-21862005+ 1339 1339 301 0 130 21846938 21869364 157 157;319;1640;6119;15880;30074 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21846938-21869364&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.550724637681 0.392045454545 8.17116086957 0.879 -4.45065652174 12.6218173913 0.71361473359 1.06163655465 2028 19 19;1154;2028;2765;4576;5725 8.16068695652 0.3819 -7.3414 15.5020869565 0.542077974719 0.98392729571 3379 746 746;1536;2871;3379;4344;4897 0.0 0.0 immunoglobulin segment overlaps an immunoglobulin region 1648 548925 chr22:42079657-42079683+ NoOverlap chr22 42079657 42079683 + 8.97024432818 9 0.946779922518 -8.46978849835 17.4400328265 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;42079656;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A42079657-42079683%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A42079657-42079683&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.170879517989 0.694882712929 0.957429387588 42475661 42475687 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;42475660;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A42079657-42079683%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A42475661-42475687&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EWEGWASRVLLKLSR Same 550297 chr22:42079657-42079683+ 1636 1636 12 0 1086 42079657 42079683 Best 1648 1648 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:42079657-42079683&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 2.025 13.5105333333 0.9514 -1.11043333333 14.6209666667 0.536406912069 1.01732747808 2894 Best 2894 2894 12.9003222222 0.5351 -3.01203333333 15.9123555556 0.40758486743 0.883622107648 3921 Best 3921 3921 0.0 0.0 not annotated putative regulatory region 1649 591957 chr9:41074191-41074550- NoOverlap chr9 41074191 41074550 - 5.99506418121 120 0.396251875588 3.30222777624 2.69283640497 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;41074190;360;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41074191-41074550-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A41074191-41074550&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.655592146835 0.694470476348 0.81120560207 70972301 69147779 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;70972300;-1824521;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41074191-41074550-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A70972301-69147779&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARGGVPARSQAGGGPRQAADSLRLREPQQDRPGGAIEGSPIPVLTVPTAPYEDQRPSGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVGSDGRYFSRTAIEIVVQMAAANGVSVR Same 592911 chr9:41074191-41074550- 1632 1632 17 0 1087 41074191 41074550 Best 1649 1649 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:41074191-41074550&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.713888888889 0.82878953108 8.44068333333 0.785 2.0564625 6.38422083333 0.95578910334 0.961153520487 1058 Best 1058 1058 35.4520825 0.7885 2.56604833333 32.8860341667 1.04117510693 1.02363964945 464 Best 464 464 0.748573093877 chr9:68357128-68357388+ 0.782405980338 chr9:68357128-68357388+ ENST00000613141.1,ENST00000458364.2 NC,AntiNCintron pseudogene FSHD region gene 1, member H unprocessed pseudogene (ENSG00000184906) 1650 590028 chr9:119526654-119526680+ NoOverlap chr9 119526654 119526680 + 7.95689990785 9 0.999055636089 -7.45998880598 15.4168887138 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;119526653;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A119526654-119526680%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A119526654-119526680&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0885760877015 0.69419405805 0.9692801836 122288932 122288958 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;122288931;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A119526654-119526680%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A122288932-122288958&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HVSICVGIQMGR Same 590975 chr9:119526654-119526680+ 1678 1678 -28 0 1088 119526654 119526680 Best 1650 1650 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:119526654-119526680&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.0 -2.42057777778 0.9994 -13.9606555556 11.5400777778 0.0110315931169 1.0086650549 36354 Best 36354 36354 -18.1891111111 0.5245 -29.7863111111 11.5972 -0.0167576003741 0.614574252978 45617 Best 45617 45617 0.0 0.0 not annotated potentially spurious 1652 537027 chr2:227608778-227609095+ NoOverlap chr2 227608778 227609095 + 4.45967172902 106 0.670952292524 1.37070096938 3.08897075964 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227608777;318;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227608778-227609095%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227608778-227609095&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.736506296496 0.693484349854 0.841181571141 228473494 228473811 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228473493;318;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227608778-227609095%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228473494-228473811&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DFSTDAMGCCGCGGCGGRCSGGCGGGCGGGCGGGCGGGCGGCGGGCGSYTTCR*YRVGCCSSCCPCCRGCCGGCCSTPVICCCRRTCRSCGCGCGKSCCQQKCCCQKQCCC Same 538397 chr2:227608778-227609095+ 1198 1198 454 50 561 227598893 227617809 853 853;1652;2344;9463;10241;31196;35213 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227598893-227617809&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.672955974843 0.354218880535 9.28650849057 0.8554 2.15610188679 7.13040660377 0.991824197894 1.001404609 818 692 692;818;1157;2569;3216;3360;61544 11.1584981132 0.3258 3.45663773585 7.70186037736 0.541918101411 0.811928636216 3380 2617 2617;3136;3286;3380;3692;5489;30629 0.0 0.0 protein-coding gene (shared cluster) protein-coding genes ENSG00000284643, ENSG00000284622, ENSG00000284704, ENSG00000284631 1654 520478 chr17:10803919-10803966- NoOverlap chr17 10803919 10803966 - 8.18546875054 16 0.96819829099 -2.94131881744 11.126787568 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;10803918;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A10803919-10803966-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A10803919-10803966&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.512638703502 0.693119949781 1.03865999714 10707236 10707283 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;10707235;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A10803919-10803966-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A10707236-10707283&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSWAMLLGSLWGRCHPGRCALFLILALLLDAVGLVLLLLGILAPLSSWDFFIYTGALILALSLLLWIIWYSLNIEVSPEK Same 521888 chr17:10803919-10803966- 1650 1650 4 0 421 10803748 10803966 593 593;1654 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:10803748-10803966&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.625 0.22966507177 14.353075 0.9792 1.8343625 12.5187125 0.828158015881 1.0297904756 1570 887 887;1570 22.01615625 0.682 1.27050625 20.74565 0.929759703449 1.00345688427 1941 1046 1046;1941 0.0 0.167821756438 chr19:55383729-55384259- ENST00000581851.1,ENST00000580899.1 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000263429 1655 527576 chr19:16731191-16731241+ NoOverlap chr19 16731191 16731241 + 15.2051469438 17 0.750176600739 3.94904722361 11.2560997202 ENST00000379808.7,ENST00000524140.6,ENST00000549814.5,ENST00000552788.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;16731190;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A16731191-16731241%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A16731191-16731241&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.720856150566 0.692936063588 1.00289579987 16842002 16842052 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;16842001;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A16731191-16731241%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A16842002-16842052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSESFPLIPSMPFLADMDAEREALQSTAYPEVPDLLPEAR Same 529022 chr19:16731191-16731241+ 1706 1706 -51 0 498 16727565 16731241 739 739;1655 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:16727565-16731241&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.56862745098 0.0 25.2239176471 0.8497 9.64802941176 15.5758882353 0.736031384162 0.996936490716 1945 1050 1050;1945 28.3536529412 0.3758 8.98866470588 19.3649882353 0.70873077207 0.962251922931 2778 Best 2778 2778;2889 0.0 0.0 ENST00000379808.7,ENST00000518676.5 CDS,NC pseudo-exon NWD1 pseudo-exon 1656 583273 chr8:907912-907962+ NoOverlap chr8 907912 907962 + 18.8271118052 17 0.975402456703 12.4458882668 6.38122353834 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;907911;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A907912-907962%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A907912-907962&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.740081095237 0.692758070938 0.678209454439 857912 857962 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;857911;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A907912-907962%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A857912-857962&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVLPGILQKHCCILPDRNTGK Same 584201 chr8:907912-907962+ 1640 1640 16 0 1091 907912 907962 Best 1656 1656 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:907912-907962&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.450980392157 0.0 17.2198352941 0.8094 12.3717117647 4.84812352941 0.52085163819 0.631421193365 2999 Best 2999 2999 22.6695764706 0.4842 13.3870823529 9.28249411765 0.630639427522 0.692816245157 3062 Best 3062 3062 0.0 0.0 ENST00000522092.5 NC coding exon(s) DLGAP2 alternative first exons 1659 531034 chr19:37830592-37830642- NoOverlap chr19 37830592 37830642 - 8.32278233416 17 0.824505989166 -3.067888323 11.3906706572 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37830591;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830592-37830642-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37830592-37830642&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.571338234243 0.691792985474 1.0325837528 38321232 38321282 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38321231;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830592-37830642-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38321232-38321282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IEKTVHSGAVLALSTLEGPQGNALLCSYGTDNIIHLTEAVLQVNK Same 532501 chr19:37830592-37830642- 1634 1634 25 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.529411764706 0.0 11.2923529412 0.9209 -6.60369411765 17.8960470588 0.735987672523 0.994594055857 1946 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 20.6013529412 0.4738 -7.97464117647 28.5759941176 0.820382169466 1.05209609052 2408 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.19980952155 chr19:37892578-37895456- 0.495413825635 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 1663 514707 chr16:68014273-68014344- NoOverlap chr16 68014273 68014344 - 6.23529996971 24 0.951695023016 -1.24467929328 7.479979263 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;68014272;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A68014273-68014344-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A68014273-68014344&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.638231163955 0.691068112337 1.03856076661 68048176 68048247 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;68048175;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A68014273-68014344-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A68048176-68048247&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCGETQVGWHGETYCLVGGYRVHGDAPLATPTK None NA NA 0 697 68014273 68015770 1080 1080;1663 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:68014273-68015770&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 0.321428571429 7.81500416667 0.9434 -3.06929583333 10.8843 0.736131502659 1.05787827044 1944 Best 1944 1944;4121 9.0753625 0.3667 -3.5060625 12.581425 0.492152149039 0.905408831788 3559 Best 3559 3559;5220 0.0 0.0 ENST00000574912.1,ENST00000570709.6 NC,AntiUTR5intron protein-coding gene protein coding gene ENSG00000263201 1665 563906 chr5:37834655-37834780+ NoOverlap chr5 37834655 37834780 + 6.19650485021 42 0.90514483355 3.75204760759 2.44445724262 ENST00000326524.6,ENST00000344622.8,ENST00000381826.8,ENST00000427982.5,ENST00000502572.1,ENST00000510177.5,ENST00000515058.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;37834654;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37834655-37834780%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A37834655-37834780&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.933152401327 0.690814266286 0.717143742368 37834757 37834882 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;37834756;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37834655-37834780%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A37834757-37834882&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGNGSYSHCSARRARGGGRGSGLRRAPREASYRRAAGRRTRCGAAPGRQPR Same 564894 chr5:37834655-37834780+ 1656 1656 9 0 1098 37834655 37842122 Best 1665 1665;3432;9737;17708;23431;43248;66339;67574 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:37834655-37842122&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.761904761905 1.14337568058 -0.726757142857 0.9352 -4.12220952381 3.39545238095 0.111512408603 0.714647209285 14736 4518 4518;14736;23580;58453;64403;65427;67583;67906 -7.56442142857 0.5082 -9.39178095238 1.82735952381 -0.0115216214726 0.541096012145 41849 5584 5584;29735;41849;43350;44494;45609;51811;60370 0.0 0.0 ENST00000326524.6,ENST00000620847.1 AntiCDS,AntiUTR5 not annotated putative regulatory region 1669 503450 chr14:23102639-23102710- NoOverlap chr14 23102639 23102710 - 6.23500827452 24 0.846326390478 -1.1305457664 7.36555404092 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23102638;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23102639-23102710-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23102639-23102710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.642719316806 0.690395928579 1.03495125744 23571848 23571919 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23571847;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23102639-23102710-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23571848-23571919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATLHELLHALGFSGQLFKKWRDCPSGFSGK Same 505289 chr14:23102639-23102710- 1619 1619 50 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.486111111111 0.24 12.7663041667 0.9753 -1.16510833333 13.9314125 0.966931685291 1.0463191343 987 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 25.3173208333 0.661 -1.83987083333 27.1571916667 1.06064430605 1.05349244439 219 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 1671 594048 chr9:136254899-136254955- NoOverlap chr9 136254899 136254955 - 9.96009473738 19 0.680499371569 -1.64589494153 11.6059896789 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136254898;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136254899-136254955-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136254899-136254955&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.63972504784 0.69019373156 1.02894330696 139146745 139146801 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139146744;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136254899-136254955-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139146745-139146801&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPPLLAAPVVPEEAAPPILHQGSPLLPTTSSCGPGSESASGTCWGPSEEATVSSHTSPAGSVSSLSCPSLWEFQKAAATLIQLSGSSSSLPSLEAEDSPDEGFSWPGELSAR Same 595004 chr9:136254899-136254955- 1746 1746 -75 0 518 136245441 136267514 774 774;1246;1671;1737;14484;26677;40966;49975;52795 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136245441-136267514&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.561403508772 0.2375 17.8531473684 0.8943 -3.32543157895 21.1785789474 0.838051620435 0.971234915165 1522 109 109;1226;1522;2295;2801;2860;36147;58996;63557 20.2133789474 0.5116 -10.2927842105 30.5061631579 0.902853994435 1.03652187583 2089 1329 1329;2089;2472;2567;3628;6432;23671;29069;54815 0.0 0.0861448142346 chr6:32049270-32049587- not annotated putative regulatory region 1677 559285 chr4:79634275-79634310+ NoOverlap chr4 79634275 79634310 + 6.13936654727 12 0.980605783169 -7.09664170444 13.2360082517 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;79634274;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A79634275-79634310%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A79634275-79634310&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.093587973817 0.68926523804 0.994308097545 80555429 80555464 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;80555428;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A79634275-79634310%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A80555429-80555464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPQMPMRCKRDW Same 560270 chr4:79634275-79634310+ 1768 1768 -91 0 1106 79634275 79634310 Best 1677 1677 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:79634275-79634310&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.571428571429 0.347675 0.9997 -8.83595833333 9.18363333333 0.100796304896 0.94789844034 15753 Best 15753 15753 -6.36924166667 0.7521 -15.528825 9.15958333333 -0.000775633771929 0.692047124651 35759 Best 35759 35759 0.0 0.0 not annotated potentially spurious 1678 548919 chr22:41971802-41971846+ NoOverlap chr22 41971802 41971846 + 10.1642933846 15 0.836750845604 -5.58002031644 15.744313701 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;41971801;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41971802-41971846%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A41971802-41971846&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.576783748464 0.688763302529 0.971244724708 42367806 42367850 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;42367805;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41971802-41971846%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A42367806-42367850&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVPPQETGIALGASLSPLPTSSLVPRKLSSISLTLHQNSQAR Same 550291 chr22:41971802-41971846+ 1607 1607 71 0 449 41971511 41976889 643 643;1518;1625;1678;2356;48456;54626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:41971511-41976889&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.0 16.7622333333 0.9964 -0.807773333333 17.5700066667 0.916696933211 1.00885917283 1243 797 797;1243;1705;1853;3195;37930;49782 18.7989666667 0.4116 -3.43005333333 22.22902 0.649013235263 1.02920138949 3000 2758 2758;2926;3000;4195;4636;26254;61260 0.0 0.0 coding exon(s) SEPT3 alternative first exon 1681 527003 chr19:6411742-6411786+ NoOverlap chr19 6411742 6411786 + 13.1126200517 15 0.94000254317 -2.23680005868 15.3494201104 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;6411741;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6411742-6411786%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A6411742-6411786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.650372222855 0.688403136619 0.999513140893 6411753 6411797 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;6411752;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6411742-6411786%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A6411753-6411797&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGQAPSVVIVFDCSMETMLRRVLHWGQVEHR Same 528449 chr19:6411742-6411786+ 1549 1549 132 0 18 6396383 6424885 18 18;152;1552;1681;2470;11355;12316;12885;15770;20124;36825 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:6396383-6424885&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 1.16883116883 13.5469666667 0.918 0.8767 12.6702666667 0.672222527473 1.03078377005 2200 228 228;1347;1830;2200;3049;3131;9882;24431;37923;50538;67562 23.9441333333 0.4359 5.00458666667 18.9395466667 0.704862800116 0.957697053384 2795 237 237;2087;2298;2594;2633;2795;14442;22727;50962;60088;60354 0.0 0.0 ENST00000596254.1 NC pseudogene unitary pseudogene ENSG00000214347 1682 505824 chr14:105742847-105743011- NoOverlap chr14 105742847 105743011 - 6.13811269999 55 0.418872080845 0.969883606244 5.16822909374 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105742846;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105742847-105743011-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105742847-105743011&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.484143340248 0.688345005817 1.01375778902 106209184 106209348 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106209183;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105742847-105743011-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106209184-106209348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK None NA NA 0 546 105737771 105743011 829 829;1682;2080;6140;6600;28138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105737771-105743011&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.660606060606 0.566231983528 13.5030672727 0.7335 0.250078181818 13.2529890909 1.12151410187 1.00246599853 5 Best 5 5;31;57;114;876;1915 14.2521 0.517 -4.00919272727 18.2612927273 1.03979046358 1.04703360488 483 82 82;224;483;1691;2370;2712 0.0 0.01924295277 chr1:31683707-31683748- ENST00000390542.6 NC immunoglobulin segment overlaps an immunoglobulin region 1684 482663 chr10:124510196-124510294- NoOverlap chr10 124510196 124510294 - 2.88169088689 33 0.908311774185 -5.7767210964 8.65841198329 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;124510195;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A124510196-124510294-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A124510196-124510294&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.183639792966 0.688242917826 1.06762073284 126198765 126198863 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;126198764;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A124510196-124510294-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A126198765-126198863&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFPDLLSVKGNNHARRSNYCQII*DLKNHWQEDRGQEVR Same 484591 chr10:124510196-124510294- 1728 1728 -44 14 1110 124510196 124510294 Best 1684 1684 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:124510196-124510294&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.414141414141 0.52380952381 3.51502727273 0.9623 -10.0583939394 13.5734212121 0.799586034882 1.06827058068 1668 Best 1668 1668 2.60592424242 0.6461 -14.0491787879 16.6551030303 0.637865989722 1.05712748811 3026 Best 3026 3026 0.0 0.0 ENST00000368839.1,ENST00000481452.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 1685 508730 chr15:45198586-45198678- NoOverlap chr15 45198586 45198678 - 6.57736761339 31 0.849076460005 2.53926432517 4.03810328822 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;45198585;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45198586-45198678-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A45198586-45198678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.85297347428 0.687966332749 0.835701626834 45490784 45490876 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;45490783;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45198586-45198678-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A45490784-45490876&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEANPYGSPVARRDRIVVSTLRCGRSNLGSNPSHGIVGTMAR Same 510454 chr15:45198586-45198678- 1629 1629 56 0 1111 45198578 45201222 Best 1685 1685;3658;6770;7314;14365;15805;20741;57385 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:45198578-45201222&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.569892473118 1.34782608696 1.1829 0.9586 0.243774193548 0.939125806452 0.0884142450578 0.460181008514 17218 5595 5595;8787;14727;17218;22093;24393;42532;65917 -1.03517741935 0.4185 -0.326358064516 -0.708819354839 0.00958522869937 0.417778902564 30928 8460 8460;15084;16682;28123;29490;30928;42026;53935 0.0 0.0 ENST00000568314.1,ENST00000290894.12,ENST00000561278.1,ENST00000560034.1 NC,CDSintron,UTR5intron,AntiNCintron not annotated 3 tRNAs 1686 537076 chr2:230990378-230990437+ NoOverlap chr2 230990378 230990437 + 3.52037996054 20 0.649648279545 -9.98601505607 13.5063950166 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;230990377;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230990378-230990437%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A230990378-230990437&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00756657481438 0.687703985527 0.942255709829 231855093 231855152 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;231855092;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230990378-230990437%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A231855093-231855152&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEAQPQAPAQSVEGHGQVLLISGLWK Same 538446 chr2:230990378-230990437+ 1470 1470 216 0 389 230990378 230991124 544 544;1686;3814;7506;61923 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:230990378-230991124&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.495867768595 4.430215 0.9408 -18.29503 22.725245 0.692380754476 0.925128739362 2118 581 581;2118;2325;2832;27472 5.366345 0.3568 -19.54563 24.911975 0.570264600875 1.08635686156 3262 3158 3158;3262;3882;4170;35218 0.0 0.0 ENST00000414876.5 AntiNCintron coding exon(s) SPATA3 alternative first exon 1687 558083 chr3:195909040-195909219- NoOverlap chr3 195909040 195909219 - 5.48920671791 60 0.74704763358 2.13843491475 3.35077180316 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;195909039;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195909040-195909219-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A195909040-195909219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.814217633299 0.687563236494 0.881351727688 195635911 195636090 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;195635910;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195909040-195909219-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A195635911-195636090&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVVWGPPDGAGWGRPPWWTGSAGWPVAQEEGLGPRGQHQEKGGGSPAVQERGEARAGVQERGEGSPRRLLQQPEPASESGEGPR Same 559057 chr3:195909040-195909219- 1662 1662 25 0 319 195908695 195909767 435 435;1687;7715;11110;49936;55625;56550 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:195908695-195909767&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.8 0.777777777778 9.73071 0.7836 3.72235833333 6.00835166667 0.885543621245 0.972300298877 1346 374 374;1346;2237;3722;53564;66857;67033 8.02214666667 0.5612 -2.70811666667 10.7302633333 0.72982449931 0.92865484189 2709 2327 2327;2340;2709;4762;21424;33118;65052 0.0 0.18406930584 chr14:88478920-88480352- ENST00000333602.10,ENST00000468819.1,ENST00000458180.1 UTR5,NCintron,AntiNCintron under investigation TNK2 contains a series of NPRs in its 5' UTR that highlight a reading frame and STOP codon that are conserved in placental mammals, although no ATG initiation codon has been identified. However, a [CTG] codon has been identified that corresponds well to the 5' end of the NPR region and a consistent initiation codon peak in ribosome profiling data, giving a prospective 153aa single exon CDS [chr3:195909582-195908695]. 1689 578756 chr7:99606747-99606806+ NoOverlap chr7 99606747 99606806 + 10.5135849446 20 0.669763485161 2.58823488578 7.92535005882 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;99606746;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A99606747-99606806%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A99606747-99606806&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.692509198148 0.687304308095 1.01336175295 99204370 99204429 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;99204369;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A99606747-99606806%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A99204370-99204429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPSFSPTSPSPAVYIILGRVFLLSAVFLAFVTTFIMMPFASEFFPR Same 579799 chr7:99606747-99606806+ 1724 1724 -35 0 714 99604416 99610562 1102 1102;1689;5751;11556 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:99604416-99610562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.516666666667 0.789473684211 11.476605 0.688 1.30789 10.168715 0.543225059335 1.01669924865 2849 1260 1260;2328;2849;12026 11.476605 0.2151 1.30789 10.168715 0.271315583114 0.790938903876 4926 3934 3934;4228;4926;15447 0.0 0.0 ENST00000431679.5 NC protein-coding gene protein coding gene ENSG00000244219 1690 505793 chr14:105621918-105621998- NoOverlap chr14 105621918 105621998 - 9.33131837752 27 0.50451469246 2.62161853578 6.70969984173 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105621917;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105621918-105621998-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105621918-105621998&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.574568646912 0.686850924602 1.00982034887 106088255 106088335 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106088254;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105621918-105621998-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106088255-106088335&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVGGAQGQGCGLAHPCAVPCLQVKWIFSSVVDLKQTIVPDYRNMIRQGA Same 507627 chr14:105621918-105621998- 1777 1777 -87 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.324 18.2064888889 0.7954 -0.539059259259 18.7455481481 0.925568025453 0.981474843048 1211 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 16.1825703704 0.5168 -9.04298518519 25.2255555556 1.01102963457 1.05697811066 931 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.0 immunoglobulin segment overlaps an immunoglobulin region 1692 469588 chr1:244272533-244272562+ NoOverlap chr1 244272533 244272562 + 6.69398000389 10 0.949599450675 -7.86371970177 14.5576997057 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244272532;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244272533-244272562%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244272533-244272562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0514369715515 0.686616996717 0.974414952011 244435835 244435864 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244435834;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244272533-244272562%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244435835-244435864&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPFVASPSSWPACPALLPHNTHSGQ*PQLATR Same 471469 chr1:244272533-244272562+ 1670 1670 22 4 1112 244272482 244272921 Best 1692 1692;4751;38141;71945 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244272482-244272921&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.0 -2.25545 0.9685 -12.82591 10.57046 0.0103834603774 0.984898409797 36623 10628 10628;10917;36623;72255 -5.32246 0.3818 -13.84401 8.52155 -0.0153166706784 0.654744754285 44560 11898 11898;16363;44560;66715 0.0 0.0 not annotated putative regulatory region 1694 591952 chr9:41040360-41040551- NoOverlap chr9 41040360 41040551 - 6.77423752053 64 0.43787098497 3.26440776233 3.5098297582 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;41040359;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41040360-41040551-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A41040360-41040551&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.681065201022 0.68653394387 0.907536287549 69113589 69113780 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;69113588;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41040360-41040551-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A69113589-69113780&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLQIFNIAVYLFLVMEPYVRKVLCDELGAPANSAINCVPLEDFGGQHPDPNLTYAMTLLEAMKGGEYGFGAAFDADGVSR Same 592907 chr9:41040360-41040551- 1769 1769 -75 0 171 41039613 41053896 205 205;261;1694;3615;17582;51960 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:41039613-41053896&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.479166666667 0.0 20.013528125 0.9005 9.6927859375 10.3207421875 0.98839278836 1.02496155648 844 187 187;248;261;371;844;4863 49.2820234375 0.9689 22.941559375 26.3404640625 0.971990031679 1.00414366932 1553 1512 1512;1518;1550;1553;1648;1663 0.98729349922 chr9:68391534-68391724+ 0.992834382964 chr9:68391534-68391724+ ENST00000613141.1,ENST00000617940.1 NC,AntiNCintron pseudogene PGM5P2 unprocessed pseudogene (ENSG00000277778) 1701 549537 chr22:21011526-21011588- NoOverlap chr22 21011526 21011588 - 5.73090008895 21 0.723002975509 -4.80093341782 10.5318335068 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21011525;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21011526-21011588-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21011526-21011588&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.37543350831 0.684744239129 1.03640242858 21365815 21365877 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21365814;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21011526-21011588-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21365815-21365877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEGGGTWLCIPLAEEWLRPPDVDLLENQLGVAGAQALCAALTVNQAMR Same 550894 chr22:21011526-21011588- 1688 1688 13 0 122 21011391 21013083 147 147;1701;4461;19244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21011391-21013083&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.143181818182 10.6135571429 0.9333 -6.14866666667 16.7622238095 0.842427614317 1.00284764342 1499 445 445;1499;1647;3817 23.2709 0.5704 -1.7209 24.9918 1.00096476274 1.05335955421 1095 542 542;1095;2798;3696 0.821913431491 chr22:21048951-21049157+ 0.84056907878 chr22:21048951-21049157+ ENST00000292748.7,ENST00000591411.5 NC,AntiNCintron pseudogene TUBA3FP transcribed unprocessed pseudogene (ENSG00000161149) 1705 518884 chr17:66278104-66278199+ NoOverlap chr17 66278104 66278199 + 5.27484998293 32 0.423574711986 -6.8168030855 12.0916530684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;66278103;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A66278104-66278199%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A66278104-66278199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.152757790028 0.683610481295 0.947318754098 64274222 64274317 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;64274221;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A66278104-66278199%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A64274222-64274317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MNENPFASFITPTIIGLPIVILIILFPNILFPSCSRLINNWLVSVQQ Same 520296 chr17:66278104-66278199+ 1754 1754 -49 0 1121 66278104 66278199 Best 1705 1705 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:66278104-66278199&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.375 0.311688311688 -2.755465625 0.1551 -5.32835 2.572884375 0.000490644312906 0.578455784312 41276 Best 41276 41276 -0.87251875 0.1854 -8.78690625 7.9143875 0.073941421885 0.789045728511 14582 Best 14582 14582 0.0 0.0 pseudogene mitochondrially encoded ATP synthase 6 (MT-ATP6) pseudogene (ENSG00000284242) 1706 498825 chr13:98519173-98519211+ NoOverlap chr13 98519173 98519211 + 5.76881532256 13 0.747763672964 -11.5475614804 17.316376803 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;98519172;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98519173-98519211%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A98519173-98519211&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0957994693335 0.683609014688 0.947654805795 99171427 99171465 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;99171426;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98519173-98519211%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A99171427-99171465&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETFEMMELSKPGSFDHEGQNISPCSETCCALSYQSPSHSLLAPQPSAAER Same 500842 chr13:98519173-98519211+ 1320 1320 386 0 1122 98519173 98519211 Best 1706 1706 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:98519173-98519211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.615384615385 0.0 -5.71483846154 0.8622 -16.2709230769 10.5560846154 0.0317118331897 0.985531299668 28056 Best 28056 28056 -26.1981 0.5629 -37.7055923077 11.5074923077 0.0217785923634 0.472678239741 26394 Best 26394 26394 0.0 0.0 ENST00000376547.7,ENST00000481288.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 1707 577866 chr7:32428082-32428135+ NoOverlap chr7 32428082 32428135 + 15.7888498704 18 0.818510041284 11.9810888602 3.8077610102 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;32428081;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A32428082-32428135%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A32428082-32428135&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.780898047834 0.68348042846 0.565372382847 32467694 32467747 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;32467693;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A32428082-32428135%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A32467694-32467747&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPGLWVLGSANGSPTATGAAGGASGCGGNEPDCTTALRDRASAEETEPISAGR Same 578905 chr7:32428082-32428135+ 1722 1722 -15 0 1123 32428082 32428135 Best 1707 1707 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:32428082-32428135&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.685185185185 1.10526315789 19.1844666667 0.9361 17.0492333333 2.13523333333 0.641399286681 0.412365200473 2344 Best 2344 2344 18.3801944444 0.3912 20.6386111111 -2.25841666667 0.200037670825 0.268847345863 6244 Best 6244 6244 0.0 0.00713944790462 chr16:2210522-2210650- not annotated putative regulatory region 1710 539523 chr2:89637535-89637657- NoOverlap chr2 89637535 89637657 - 9.22523166494 41 0.400701915007 4.99713416075 4.22809750419 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89637534;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89637535-89637657-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89637535-89637657&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.611092966471 0.683307803436 0.911734054489 91899766 91899888 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91899765;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89637535-89637657-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91899766-91899888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHGSGFPGKRRPRGAGLSGRGGRGRSKLKSGIGAVVLPGVR Same 540878 chr2:89637535-89637657- 1911 1911 -201 0 1126 89622214 89637657 Best 1710 1710;1943;6332;11544;19922;20755;36821;56146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89622214-89637657&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.60162601626 0.645104895105 22.3211512195 0.7616 13.1099414634 9.2112097561 1.04330894861 1.02812751176 328 23 23;45;328;857;1530;2184;2340;8004 56.0043097561 0.8355 28.388797561 27.6155121951 0.977889504368 1.04757236547 1454 334 334;1274;1390;1454;1567;1631;1812;2090 0.949765548413 chr7:152235817-152235933- 0.946570029274 chr7:152235817-152235933- pseudogene lysine (K)-specific methyltransferase 2C (KMT2C) pseudogene (ENSG00000283132) 1711 505810 chr14:105704391-105704531- NoOverlap chr14 105704391 105704531 - 7.82812130419 47 0.423762193014 3.57520844803 4.25291285616 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105704390;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105704391-105704531-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105704391-105704531&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.604610731992 0.683039862224 0.935685448105 106170728 106170868 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106170727;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105704391-105704531-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106170728-106170868&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQPLTWDSASSSSLGESQALDGDPDPTVPRPQGSIAAVHTSLGLAGSCCVADWQMPPPYVVLDLPQETLEEETPGANLWPTTITFLTLFLLSLFYSTALTVTSVRGPSGNREGPQY Same 507633 chr14:105704391-105704531- 1879 1879 -168 0 543 105704391 105719646 823 823;838;1248;1547;1711;2216;9225;18253;35962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105704391-105719646&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.652482269504 0.349702380952 19.679793617 0.8832 10.3104021277 9.36939148936 1.05317788207 1.0356682242 219 94 94;95;219;285;641;1432;1674;1887;5574 11.8894914894 0.4414 0.00146382978723 11.8880276596 0.831375066716 0.943519785685 2386 51 51;686;1709;1746;1937;2386;2922;3268;6181 0.0 0.116475992085 chr12:57102290-57102496- ENST00000497872.3,ENST00000618756.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 1713 499772 chr13:51084244-51084291- NoOverlap chr13 51084244 51084291 - 14.6491689831 16 0.906750209812 2.40491250716 12.2442564759 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51084243;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51084244-51084291-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51084244-51084291&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.710875528733 0.682960866058 1.0139144899 51658380 51658427 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;51658379;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51084244-51084291-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A51658380-51658427&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK Same 501779 chr13:51084244-51084291- 1622 1622 91 0 114 51084157 51088078 136 136;145;366;1264;1713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51084157-51088078&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.541666666667 0.333333333333 18.7943875 0.9739 2.315975 16.4784125 0.915879909183 1.01753178908 1249 291 291;534;600;1000;1249 19.3872125 0.3831 1.021475 18.3657375 0.61847144129 0.969933529968 3102 408 408;1257;1688;3102;3151 0.0 0.0 ENST00000433280.6 NC protein-coding gene protein-coding gene ENSG00000226792 1714 590726 chr9:130713671-130713721+ NoOverlap chr9 130713671 130713721 + 9.2974117223 17 0.893637436664 -0.645023447626 9.94243516992 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;130713670;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A130713671-130713721%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A130713671-130713721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.64618038358 0.682790802898 1.04707080978 133589058 133589108 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;133589057;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A130713671-130713721%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A133589058-133589108&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLMQRKSLDWFHRPFKKRT Same 591679 chr9:130713671-130713721+ 1638 1638 76 0 1128 130712624 130713721 Best 1714 1714;6568;35946 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:130712624-130713721&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.43137254902 0.435897435897 9.51317647059 0.9603 -0.121482352941 9.63465882353 0.616642353633 0.98933926071 2454 Best 2454 2454;17247;57204 9.94711764706 0.3849 -2.19829411765 12.1454117647 0.371225162911 0.843527375232 4108 Best 4108 4108;30206;41890 0.0 0.0 not annotated putative regulatory region 1719 578135 chr7:57168825-57168938+ NoOverlap chr7 57168825 57168938 + 8.98568156166 38 0.340093080034 2.18785521859 6.79782634307 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57168824;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57168825-57168938%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57168825-57168938&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.434462420448 0.681810010223 1.04448723318 57236532 57236645 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57236531;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57168825-57168938%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57236532-57236645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSPYECGFDLLSSAHIPFSIKFFLIAITFPLFDLEIALLLTTLAISPSNK Same 579174 chr7:57168825-57168938+ 2031 2031 -312 0 244 57167069 57169403 311 311;1064;1719;18339;30405;36290 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57167069-57169403&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.438596491228 1.0 12.3131342105 0.3618 4.61253421053 7.7006 0.512499676123 1.00006207715 3056 1605 1605;1729;3056;18611;18962;23881 63.14155 0.7896 23.5255815789 39.6159684211 1.03967748254 1.04218816594 484 Best 484 484;596;1739;1843;2085;2580 0.777108592262 chrM:10059-10404+ 0.94511307904 chrM:10059-10404+ pseudogene MTCO3P10 mitochondrially encoded cytochrome c oxidase III pseudogene 10 (ENSG00000231537) 1721 479235 chr10:122764349-122764585+ NoOverlap chr10 122764349 122764585 + 3.32638610994 79 0.425912330159 -3.24298986896 6.5693759789 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122764348;237;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122764349-122764585%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122764349-122764585&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.235198504044 0.681682440392 1.06557560728 124523865 124524101 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124523864;237;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122764349-122764585%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124523865-124524101&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EVRLLNGMRRCSSLVEALI*GTQGTACGDL*DLAEATIVCHQLQYGQAMAARIRAHFWSGSRKILLDDFQHVGSESHLGQCVNR Same 481140 chr10:122764349-122764585+ 1517 1517 204 29 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.569620253165 0.106135244066 22.664864557 0.9073 -5.11895316456 27.7838177215 0.972808376985 1.22711503423 947 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 67.5098924051 0.9279 -4.53504936709 72.0449417722 0.935594412843 0.98139924597 1909 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.0582448748699 chr10:122630961-122631281+ 0.20839264509 chr1:157834407-157834748- ENST00000439464.6 NCintron pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 1723 552899 chr3:88126134-88126265+ NoOverlap chr3 88126134 88126265 + 5.14959085817 44 0.955750917275 1.24862499738 3.90096586079 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88126133;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88126134-88126265%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88126134-88126265&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.785376368859 0.681431485963 0.891843306449 88175284 88175415 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88175283;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88126134-88126265%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88175284-88175415&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ECQNHLRRYGNVNLELVTRIIRDGGPWEDPVLQAVLKAQPASQEIGTSGDSK Same 553841 chr3:88126134-88126265+ 1727 1727 -4 0 293 88126134 88139310 388 388;882;969;1723;6190;10019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88126134-88139310&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.492424242424 0.252873563218 3.84329772727 0.9745 0.179963636364 3.66333409091 0.477373782163 0.787008472649 3294 384 384;810;1269;2625;2709;3294 13.0570409091 0.7453 -1.40005 14.4570909091 0.893163405153 0.996411664933 2139 476 476;635;1080;1140;2139;2319 0.0 0.0 ENST00000473136.4,ENST00000462901.5 NC,AntiUTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 1724 491097 chr12:40432716-40432763+ NoOverlap chr12 40432716 40432763 + 17.0194063857 16 0.958755817502 6.90103097685 10.1183754089 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40432715;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40432716-40432763%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40432716-40432763&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.714456301084 0.680847423543 0.91812242559 40826518 40826565 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40826517;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40432716-40432763%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40826518-40826565&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQIQIVPVMQLYVSMPPNQFTDTVGK Same 493074 chr12:40432716-40432763+ 1597 1597 127 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.0 19.75691875 0.982 5.5742875 14.18263125 0.929467610045 1.01264785939 1191 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 25.55673125 0.5575 0.39298125 25.16375 0.918645975944 1.04175988121 2017 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0434965399034 chr11:1231423-1231560+ ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 1726 507341 chr15:74218613-74218720+ NoOverlap chr15 74218613 74218720 + 6.0828694933 36 0.687075184592 1.09210567425 4.99076381905 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;74218612;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A74218613-74218720%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A74218613-74218720&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.689857976047 0.680555115653 0.95359835857 74510954 74511061 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;74510953;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A74218613-74218720%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A74510954-74511061&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGEAIFPIYPRPDQPRMNPKAQDHEDLYRYCGNLALLRASTDPTAR Same 509065 chr15:74218613-74218720+ 1725 1725 1 0 709 74217332 74218720 1097 1097;1468;1726 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:74217332-74218720&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.648148148148 0.551020408163 9.90840277778 0.8654 1.40243333333 8.50596944444 0.878439361923 1.03049143293 1369 1208 1208;1283;1369 26.8920722222 0.6516 3.0847 23.8073722222 1.07757075641 1.05089902667 135 Best 135 135;349;1404 0.0 0.0 ENST00000559243.1 NC coding exon(s) CCDC33 additional 5' exons 1730 532002 chr19:51914745-51914813- NoOverlap chr19 51914745 51914813 - 5.34478693974 23 0.544358971807 -10.9652391206 16.3100260603 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51914744;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51914745-51914813-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51914745-51914813&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.179590060372 0.679392545635 0.930885830551 52417998 52418066 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52417997;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51914745-51914813-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52417998-52418066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CQKSFAQKSHLIIHQRTHIGEKPYECTECWK Same 533479 chr19:51914745-51914813- 1389 1389 341 0 163 51914745 51917661 195 195;409;1357;1730;14809 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51914745-51917661&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.36231884058 0.46 3.58783913043 0.5883 -14.6351434783 18.2229826087 0.477401180548 0.971680470001 3293 301 301;1224;3007;3293;9331 18.3932521739 0.8343 -32.003026087 50.3962782609 0.916171917461 0.767591006249 2031 673 673;959;1476;1923;2031 0.224378466353 chr19:52033720-52035440- 0.391022129902 chr19:22313671-22317176+ ENST00000613007.4 AntiUTR5intron pseudogene zinc finger protein pseudogene (ENSG00000283285) 1731 479249 chr10:122798816-122798863+ NoOverlap chr10 122798816 122798863 + 17.7082376033 16 0.821301594568 5.87231265008 11.8359249532 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122798815;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122798816-122798863%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122798816-122798863&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.704236939732 0.67939177837 0.954200290703 124558332 124558379 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124558331;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122798816-122798863%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124558332-124558379&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCSLECLQGLGLRLVNGSSRCEGRVEVYHANAWGTVCDDSWSIEDAHVVCR Same 481154 chr10:122798816-122798863+ 1758 1758 -27 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.831168831169 26.570825 0.8339 2.810125 23.7607 0.652515143454 1.01034662847 2289 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 83.3641625 0.9043 15.3980875 67.966075 0.994667875271 0.856617318635 1199 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.303742301305 chr10:122592272-122592595+ 0.226494277689 chr10:122598774-122599097+ ENST00000605982.1 NC pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 1733 552741 chr3:71007577-71007603+ NoOverlap chr3 71007577 71007603 + 6.45736675792 9 0.970626382849 -8.2397444778 14.6971112357 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;71007576;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71007577-71007603%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A71007577-71007603&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0422597440265 0.678884503911 0.972719730571 71056728 71056754 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;71056727;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71007577-71007603%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A71056728-71056754&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLCDPRCLMVAVK Same 553682 chr3:71007577-71007603+ 1759 1759 -26 0 1139 71003497 71007603 Best 1733 1733;12046;22344;31751;34119;35077;44486;44775 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:71003497-71007603&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.421875 8.87575555556 0.9992 -11.9515111111 20.8272666667 0.494756246467 0.964946998871 3178 Best 3178 3178;6887;32675;36085;37626;45905;46741;64024 -4.23273333333 0.9237 -26.6868888889 22.4541555556 0.107670139455 1.04251792461 10807 Best 10807 10807;16615;30087;31390;48859;55997;64759;66587 0.0 0.0 ENST00000318789.8,ENST00000327590.8 AntiCDSintron,AntiNCintron not annotated putative regulatory region 1734 495340 chr12:52411820-52411939- NoOverlap chr12 52411820 52411939 - 5.09363499712 40 0.505460822461 -1.96747999722 7.06111499434 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52411819;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52411820-52411939-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52411820-52411939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.31584957 0.678770631415 1.06017398131 52805604 52805723 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52805603;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52411820-52411939-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52805604-52805723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TCQHILSPLSTAEVSSPGATGSSGGSVLCVGGGGHSSGLCHNNRSSGISCPAVTSSHSSSNIFIVSK Same 497338 chr12:52411820-52411939- 1881 1881 -147 0 1140 52411742 52413387 Best 1734 1734;10682;42415 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52411742-52413387&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.658333333333 0.077519379845 13.994815 0.8085 -5.1803225 19.1751375 1.08850964891 0.929221572377 30 Best 30 30;1724;4324 15.6589525 0.3219 -5.20881 20.8677625 1.01685105395 1.05652003741 821 Best 821 821;3341;6104 0.0 0.0 ENST00000548135.1 AntiNCintron pseudogene extension KRT90P 2 exons added 1737 594044 chr9:136252721-136252795- NoOverlap chr9 136252721 136252795 - 6.9269838798 25 0.608192263676 -1.63504794836 8.56203182817 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136252720;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136252721-136252795-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136252721-136252795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.474591035249 0.678004068135 1.05611479369 139144567 139144641 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139144566;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136252721-136252795-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139144567-139144641&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQAVDLVSTWLTRRVLRDSLAALSTQAPR Same 595000 chr9:136252721-136252795- 1814 1814 -77 0 518 136245441 136267514 774 774;1246;1671;1737;14484;26677;40966;49975;52795 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136245441-136267514&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.64 0.267857142857 13.052252 0.8894 -2.616244 15.668496 0.922130964227 1.01848344552 1226 109 109;1226;1522;2295;2801;2860;36147;58996;63557 13.136108 0.4236 -5.354344 18.490452 0.800207519644 1.03140607888 2472 1329 1329;2089;2472;2567;3628;6432;23671;29069;54815 0.0 0.107312274093 chr19:4525633-4525832- not annotated putative regulatory region 1742 497298 chr12:121053950-121054006- NoOverlap chr12 121053950 121054006 - 7.67616834766 19 0.660619275357 -5.88950000625 13.5656683539 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;121053949;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121053950-121054006-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A121053950-121054006&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.452017581598 0.677377738552 0.971930950717 121491753 121491809 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;121491752;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121053950-121054006-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A121491753-121491809&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTMLNYSSDLDLILFLSCFSSVQDQAQLR Same 499310 chr12:121053950-121054006- 1697 1697 45 0 1146 121053768 121059655 Best 1742 1742;3390;7126;9195;12027;15420;18584 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:121053768-121059655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.561403508772 0.2375 10.2676842105 0.6111 -6.83892105263 17.1066052632 0.55524409733 1.00100980655 2783 Best 2783 2783;4174;4538;6046;10102;15430;23561 16.1266157895 0.3399 -11.1808157895 27.3074315789 0.680537723828 1.05517886938 2878 2866 2866;2878;4226;4741;5525;5554;8163 0.0 0.338776382125 chr12:121033461-121033743- pseudogene unitary pseudogene, orthlog of mouse 2'-5' oligoadenylate synthetase-like 2 (Oasl2) (ENSG00000283542) 1744 567883 chr5:78360515-78360619- NoOverlap chr5 78360515 78360619 - 5.60671427335 35 0.779559450239 0.725559965202 4.88115430815 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;78360514;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A78360515-78360619-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A78360515-78360619&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.728068501929 0.677160570562 0.941155272269 77656339 77656443 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;77656338;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A78360515-78360619-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A77656339-77656443&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEAAAPLRAHVAAAEQIRVQLAGHPAGRATEHARCGGLLAAAQLAFAIPFLR Same 568887 chr5:78360515-78360619- 1692 1692 52 0 1148 78360504 78360619 Best 1744 1744;2389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:78360504-78360619&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.809523809524 1.00506756757 2.29971714286 0.7307 -0.714937142857 3.01465428571 0.126115955566 0.682370965422 13432 Best 13432 13432;46268 1.72392285714 0.3596 -4.64078 6.36470285714 0.212631759194 0.740133174394 5927 Best 5927 5927;30116 0.0 0.0 ENST00000621999.4,ENST00000614488.4 AntiUTR5,AntiNC not annotated putative regulatory region 1746 638069 chr14:35689555-35689833- Extension chr14 35689555 35689833 - 3.24948170258 93 0.91337682975 -1.13059244681 4.3800741494 chr14:35689555-35690004- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;35689554;279;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A35689555-35689833-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A35689555-35689833&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.663087647093 0.676953556597 0.953281845732 36158761 36159039 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;36158760;279;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A35689555-35689833-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A36158761-36159039&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAVPVIDSSSRHAPSLQSSTEASSITRSTESHITDTHSRESSLEVGDSIYDHLCHLIGPVELADSAFEQIQYIDLEGDDDLLSTLKEYFKENQENHSK Same 638718 chr14:35689555-35689833- 1523 1523 223 0 433 35688390 35689833 619 619;1406;1746;5165;32191 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:35688390-35689833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.408602150538 0.0862975564491 4.19851827957 0.9963 -0.0216946236559 4.22021290323 0.753960214718 0.840621500416 1849 554 554;1849;2725;3200;13014 4.89287634409 0.84 -6.56048709677 11.4533634409 0.756133216124 0.949708835173 2616 277 277;2355;2616;3577;13447 0.0 0.0 ENST00000307138.10,ENST00000553917.5,ENST00000554652.5 ExtensionMid,NC,NCintron coding exon(s) RALGAPA1 intronic CDS 1749 482352 chr10:117542498-117542647- NoOverlap chr10 117542498 117542647 - 4.91986200094 50 0.766597390707 0.659666030407 4.26019597054 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117542497;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542498-117542647-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117542498-117542647&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.713641980013 0.67664898152 0.943617244242 119302009 119302158 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119302008;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542498-117542647-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119302009-119302158&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVAITRPEVEGGRLFKVRQREVSAWEPGGLDPGREWNGVGAAASAEPSAAHRAAGLLR Same 484279 chr10:117542498-117542647- 1705 1705 44 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.72 0.852272727273 0.44927 0.9058 -2.490046 2.939316 0.177925421984 0.708060649292 9817 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -3.059334 0.686 -6.012594 2.95326 0.127274470815 0.621941815007 9331 Best 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000551288.5,ENST00000442245.5 NCintron,AntiUTR5 not annotated putative regulatory region 1751 480338 chr10:26664276-26664392- NoOverlap chr10 26664276 26664392 - 4.97538460371 39 0.500977164287 -2.4235615012 7.39894610491 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;26664275;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26664276-26664392-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A26664276-26664392&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.2839374288 0.676148405294 1.06329353863 26953205 26953321 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;26953204;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26664276-26664392-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A26953205-26953321&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VHLLQQVLQHPFQKHSAAEKAGYTLPTPSWAKDLRLSCLS Same 482247 chr10:26664276-26664392- 1898 1898 -147 0 1152 26653135 26667644 Best 1751 1751;2764;52781 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:26653135-26667644&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.487179487179 0.303896103896 6.12291025641 0.7396 -5.21669230769 11.3396025641 0.787073187186 1.07978907442 1720 Best 1720 1720;4052;10531 15.2809153846 0.4301 -4.18503589744 19.4659512821 1.04962841498 1.05174836222 330 Best 330 330;3003;15239 0.0 0.0 ENST00000446557.1 NC pseudogene unitary pseudogene ENSG00000227932 1752 579831 chr7:149295117-149295236+ NoOverlap chr7 149295117 149295236 + 3.99117743373 40 0.460541695277 -4.87479005456 8.86596748829 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;149295116;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A149295117-149295236%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A149295117-149295236&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132707869223 0.67612377615 1.05223938398 148992208 148992327 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;148992207;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A149295117-149295236%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A148992208-148992327&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FMQKPGFLRHLCGHSQEKHYPCSPCGESFTCPSWLVRHQDSHASQASPSCLVCER Same 580801 chr7:149295117-149295236+ 1858 1858 -106 0 602 149294749 149295236 926 926;1752;12214 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:149294749-149295236&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.375 2.2260275 0.4411 -8.4977575 10.723785 0.292459668816 1.10577594347 5799 2415 2415;5799;25797 9.684705 0.7091 -19.819265 29.50397 1.01710480208 0.97776725898 817 807 807;817;2257 0.141856473387 chr7:149070423-149072473- 0.334876540842 chr19:7519243-7520949+ ENST00000476295.5,ENST00000481519.5 NC,NCintron pseudogene zinc finger family pseudogene (ENSG00000244560) 1755 534718 chr2:110269566-110269628+ NoOverlap chr2 110269566 110269628 + 10.4025857207 21 0.58230098784 1.82815721915 8.57442850158 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110269565;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110269566-110269628%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110269566-110269628&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.617206222857 0.674792200797 1.03806509286 111027143 111027205 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111027142;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110269566-110269628%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111027143-111027205&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ICRAFQSLQNTLPNILYVFYCSCSVC Same 536070 chr2:110269566-110269628+ 1818 1818 -63 0 64 110261435 110272049 71 71;655;738;1590;1755;2806;2841;5622 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110261435-110272049&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.47619047619 0.0 18.9326619048 0.7719 1.13771904762 17.7949428571 0.768233214671 1.00742810393 1796 39 39;230;616;725;1137;1749;1796;2218 45.0957 0.7946 8.14202380952 36.9536761905 1.0214934196 1.02778047172 766 260 260;295;766;1197;1279;1318;1559;1820 0.0 0.0 ENST00000562613.2 NCintron pseudogene ion transport protein domain-containing transcribed unprocessed pseudogene (ENSG00000261760) 1756 500296 chr13:99723982-99724020- NoOverlap chr13 99723982 99724020 - 8.33303844929 13 0.989961911134 -4.55078478043 12.8838232297 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;99723981;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A99723982-99724020-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A99723982-99724020&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.357806158338 0.674753382683 1.01041698802 100376236 100376274 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;100376235;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A99723982-99724020-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A100376236-100376274&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HNSLQQKG*EKGAQTMVR Same 502309 chr13:99723982-99724020- 1738 1738 18 4 1155 99723905 99724160 Best 1756 1756;8678;28058 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:99723905-99724160&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.410256410256 0.0 8.50999230769 0.9852 -9.29688461538 17.8068769231 0.610890784053 0.99905611991 2481 Best 2481 2481;7507;11947 6.93947692308 0.929 -14.8336076923 21.7730846154 0.45263997461 1.05151652955 3720 Best 3720 3720;8545;16588 0.0 0.0 ENST00000339105.8 AntiCDSintron not annotated putative regulatory region 1758 517507 chr17:41909234-41909269+ NoOverlap chr17 41909234 41909269 + 4.89790829023 12 0.878870069429 -8.74568325281 13.643591543 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;41909233;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A41909234-41909269%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A41909234-41909269&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0447317785065 0.674060524644 0.975720367332 40065487 40065522 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;40065486;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A41909234-41909269%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A40065487-40065522&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPLALPSPLQPLLPGHSSSATEAERSCQAR Same 518904 chr17:41909234-41909269+ 1654 1654 104 0 1157 41909234 41909269 Best 1758 1758 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:41909234-41909269&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.615384615385 0.285825 0.9811 -14.8223583333 15.1081833333 0.218323155036 1.05354956376 8044 Best 8044 8044 -5.236075 0.4451 -18.14945 12.913375 0.0497231206528 0.83486677808 18797 Best 18797 18797 0.0 0.0 ENST00000352035.6,ENST00000590770.5,ENST00000590735.1 AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated potentially spurious 1762 571033 chr6:32387409-32387459+ NoOverlap chr6 32387409 32387459 + 5.17920596284 17 0.702771307653 -8.77293536242 13.9521413253 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;32387408;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A32387409-32387459%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A32387409-32387459&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.158560175721 0.673138245315 0.953231256277 32355186 32355236 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;32355185;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A32387409-32387459%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A32355186-32355236&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGDVSFHNEVD*SHIYSLTGITFCGIFHPYSSLQSAGTSVTFCLDHHENCPDSFPVTPVTSLTSCDR Same 572057 chr6:32387409-32387459+ 1567 1567 195 6 1161 32387409 32387459 Best 1762 1762 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:32387409-32387459&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.450980392157 1.17692307692 2.82467058824 0.6772 -9.35121176471 12.1758823529 0.256087852082 1.0630404357 6788 Best 6788 6788 20.6993352941 0.6883 -19.6198941176 40.3192294118 0.982548634323 0.928039964233 1385 Best 1385 1385 0.0 0.271360765554 chr5:180949904-180950544+ not annotated potentially spurious 1763 528151 chr19:35586431-35586481+ NoOverlap chr19 35586431 35586481 + 8.72125894883 17 0.725093461509 -6.9332117824 15.6544707312 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35586430;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35586431-35586481%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35586431-35586481&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.526864323546 0.673045775854 0.959587623333 36077333 36077383 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36077332;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35586431-35586481%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36077333-36077383&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VMALKPPSATQPAPNAPATPDAPPTTGDPGASAAPGSPTTTGGPGAPAEVPQEPQEPTQTPEELAFYAPNYLCLTIFAILLFPPFGLAALYFSYEVK Same 529599 chr19:35586431-35586481+ 1643 1643 120 0 1162 35586254 35586481 Best 1763 1763;4159 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35586254-35586481&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.470588235294 0.3984375 8.93195882353 0.9807 -13.5081470588 22.4401058824 0.750438361965 0.945335761405 1864 Best 1864 1864;6183 8.93195882353 0.3065 -13.5081470588 22.4401058824 0.463717654291 1.06567862729 3672 Best 3672 3672;11878 0.0 0.0 protein-coding gene protein coding gene ENSG00000283758 1766 511016 chr16:27067498-27067584+ NoOverlap chr16 27067498 27067584 + 4.68675526463 29 0.750426594897 -2.91361040596 7.60036567059 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;27067497;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A27067498-27067584%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A27067498-27067584&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.441489192879 0.672596142514 1.05705439127 27078819 27078905 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;27078818;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A27067498-27067584%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A27078819-27078905&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEASLPGSGSGSSILSSASFISLGSSALTYKVSSGLLTSTASLPSTQASSR Same 512656 chr16:27067498-27067584+ 1749 1749 17 0 1164 27067257 27067584 Best 1766 1766;3449;10098 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:27067257-27067584&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.620689655172 0.244039270687 4.80575862069 0.9185 -7.45434827586 12.2601068966 0.72142591628 1.08014185191 2003 Best 2003 2003;2882;23697 4.4850137931 0.321 -9.50148965517 13.9865034483 0.452075012865 0.980816168107 3724 Best 3724 3724;4350;20210 0.0 0.0 ENST00000418886.1,ENST00000565783.1 NC,AntiNC under investigation ENSG00000234186 has long been considered as an ambiguous gene. RefSeq recognise human C16orf82 and its mouse ortholog 4930571K23Rik as single exon protein-coding genes, although both are lncRNAs in GENCODE (where the transcript structure is certainly well supported). The human CDS is poorly conserved over its first half, although the putative STOP codon and sequence upstream produce a PhyloCSF signal that looks genuine, suggesting the potential for partial translation in mammalian genomes. However, there is no obvious ATG initiation codon to use. A [CTG] codon conserved in mammals seems to demarcate the conserved sequence, which would give a 154aa CDS in human [chr16:27066996-27067460]. 1768 505845 chr14:105856093-105856149- NoOverlap chr14 105856093 105856149 - 7.54383681322 19 0.672602426184 -4.98675252889 12.5305893421 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105856092;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105856093-105856149-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105856093-105856149&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.454037514615 0.672437310471 0.996025665546 106322198 106322254 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106322197;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105856093-105856149-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106322198-106322254&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGSSSPSLSLLSCGSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWK None NA NA 0 63 105837465 105856215 70 70;297;303;618;1534;1768;2725;3071;4703;4966;9883;19584;21248 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105837465-105856215&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.614035087719 0.597902097902 12.5395052632 0.806 -3.62212631579 16.1616315789 0.703321083548 1.02139058944 2075 171 171;488;606;760;1848;2075;2155;2623;3063;3220;4742;9758;24097 22.4674105263 0.5502 -4.69239473684 27.1598052632 0.954996244948 1.05481884907 1760 30 30;154;1395;1760;1980;1989;2291;2612;2659;3437;3454;6249;20954 0.0 0.0 ENST00000390559.6,ENST00000612473.1 NC,NCintron coding exon(s) IGHM alternative final coding exons 1769 486707 chr11:132347304-132347330+ NoOverlap chr11 132347304 132347330 + 7.94018885824 9 0.90656731348 -8.88445543581 16.8246442941 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;132347303;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A132347304-132347330%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A132347304-132347330&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.105096218615 0.672351045896 0.955981341592 132217198 132217224 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;132217197;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A132347304-132347330%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A132217198-132217224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQNTSCLVNPALLSK Same 488669 chr11:132347304-132347330+ 1687 1687 82 0 1166 132347304 132347330 Best 1769 1769 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:132347304-132347330&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.0 -9.4095 0.9674 -24.3908666667 14.9813666667 0.0396771093614 1.03013630003 25651 Best 25651 25651 -11.8142333333 0.3559 -29.6392333333 17.825 0.0298093524422 0.894617942829 23810 Best 23810 23810 0.0 0.0 not annotated putative regulatory region 1773 503436 chr14:23095039-23095161- NoOverlap chr14 23095039 23095161 - 5.26211700788 41 0.960664474578 1.31954392863 3.94257307925 ENST00000262710.5,ENST00000457657.5,ENST00000555053.5,ENST00000605057.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23095038;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23095039-23095161-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23095039-23095161&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.782570632697 0.671651370567 0.883551389465 23564248 23564370 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23564247;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23095039-23095161-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23564248-23564370&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALAEITEDARSRRDGPEYLTQDGGAGGGDSGREASSGAAGDRPEGR Same 505275 chr14:23095039-23095161- 1802 1802 -29 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.965579710145 0.543031707317 1.0 -0.966553658537 1.50958536585 0.144637555156 0.552693510757 11935 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 -18.6591414634 0.774 -22.1360536585 3.47691219512 -0.064859589167 0.51797161354 73628 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.127021702896 chr19:5623206-5623394+ ENST00000262710.5,ENST00000319074.5 CDS,AntiUTR5 protein-coding gene protein-coding gene ENSG00000283654 1777 572512 chr6:109242223-109242294+ NoOverlap chr6 109242223 109242294 + 5.1178416543 24 0.895749090817 -3.13992066309 8.25776231739 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109242222;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109242223-109242294%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109242223-109242294&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.483105452144 0.670689893418 1.05680669336 109563426 109563497 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109563425;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109242223-109242294%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109563426-109563497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGQEWGWAHADVDRFAVLYDTWTWEAALLENK Same 573539 chr6:109242223-109242294+ 1774 1774 3 0 121 109239409 109242294 146 146;1777 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109239409-109242294&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.214285714286 10.8470541667 0.9653 -2.6071 13.4541541667 0.912428257603 1.05147150091 1259 150 150;1259 18.8663208333 0.6586 -6.81914583333 25.6854666667 1.02480847344 1.05634255437 701 583 583;701 0.0 0.0 ENST00000453496.2 NC pseudogene unitary pseudogene CCDC162P (ENSG00000203799) 1778 544149 chr20:58853267-58853329+ NoOverlap chr20 58853267 58853329 + 7.9206523583 21 0.763103685054 0.259961959862 7.66069039844 ENST00000371099.6,ENST00000371100.8,ENST00000371102.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;58853266;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58853267-58853329%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A58853267-58853329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.657875904244 0.670634944832 1.02768116924 57428322 57428384 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;57428321;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58853267-58853329%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A57428322-57428384&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAATVLWACATASTAIICQDNAISPLK Same 545540 chr20:58853267-58853329+ 1753 1753 25 0 305 58839591 58856213 410 410;1778;7945;12986;19091;20890;24880;65020;71495 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:58839591-58856213&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539682539683 1.10526315789 13.530747619 0.9996 -0.400014285714 13.9307619048 0.962572223778 1.04716609224 1018 115 115;1018;3966;4263;7912;16426;32661;49033;70767 14.0990428571 0.3605 -0.863585714286 14.9626285714 0.596570673762 0.939340267632 3178 366 366;3178;7236;8695;17364;24762;29540;46544;65521 0.0 0.0 ENST00000371099.6,ENST00000464624.6,ENST00000313949.11,ENST00000462499.5 CDS,NC,UTR3intron,NCintron coding exon(s) GNAS cassette exon 1779 491088 chr12:40421837-40421896+ NoOverlap chr12 40421837 40421896 + 8.79282998592 20 0.84159609369 2.21481015086 6.57801983505 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40421836;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40421837-40421896%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40421837-40421896&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.735090043251 0.670600465106 0.961209351898 40815639 40815698 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40815638;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40421837-40421896%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40815639-40815698&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TYTCNLFLKLTLHKQYPTCGLCGNFNSTPGNIPMYHS Same 493065 chr12:40421837-40421896+ 1699 1699 80 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.433333333333 0.0 12.383225 0.9827 3.975915 8.40731 0.809548031909 0.944346057083 1632 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 14.132185 0.4729 1.66727 12.464915 0.611828940861 0.860262936461 3131 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 1780 579867 chr7:150331153-150331248+ NoOverlap chr7 150331153 150331248 + 4.18653440103 32 0.611284046693 -4.22678440437 8.4133188054 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;150331152;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A150331153-150331248%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A150331153-150331248&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.236834010332 0.670402663506 1.06421669057 150028242 150028337 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;150028241;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A150331153-150331248%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A150028242-150028337&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEKPGHHLSVLPPTGAFSESIFASLNSPTLVEQNSSLKVEAIEHLLFLKANLEQFPNYTPPPLICSSGDLAK Same 580837 chr7:150331153-150331248+ 1886 1886 -106 0 66 150329868 150331248 74 74;1780;4082;12493 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:150329868-150331248&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.552083333333 0.156862745098 6.02355 0.7427 -5.65381875 11.67736875 0.703948575587 1.07833654273 2072 750 750;2072;2985;5137 5.772675 0.3258 -7.084378125 12.857053125 0.489952318693 0.956890744368 3566 2637 2637;3557;3566;5518 0.0 0.0 ENST00000343855.5,ENST00000323078.7 UTR3,UTR5intron pseudo-exon ZBED6CL pseudogenic sequence upstream of ATG 1782 513469 chr16:20721184-20721384- NoOverlap chr16 20721184 20721384 - 6.06353878975 67 0.292049480225 -0.804747731341 6.86828652109 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20721183;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721184-20721384-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20721184-20721384&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.398789188005 0.670286721309 1.05750572146 20732506 20732706 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20732505;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721184-20721384-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20732506-20732706&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IIAFSTSSQLEFIIVTIGINQPHLAFIHICTHAFFKAILFICSRSIIHSLNDEQDIRKIGGLFKPRPSLPPPL Same 515116 chr16:20721184-20721384- 1827 1827 -45 0 1174 20720997 20722053 Best 1782 1782;2457;4589;12301;12422;13695;22010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20720997-20722053&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.378109452736 0.322115384615 -0.909885074627 0.0135 -1.48280597015 0.572920895522 -0.000437314713125 0.45765034037 41718 26036 26036;26102;32372;32727;36194;41718;53953 37.5283761194 0.6877 1.31460597015 36.2137701493 0.928451834659 0.992470336967 1949 937 937;1188;1352;1485;1530;1845;1949 0.0 0.875978591244 chrM:12337-14148+ ENST00000561584.5,ENST00000501740.6 AntiUTR5intron,AntiNCintron pseudogene mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene (ENSG00000283399) 1791 545922 chr20:58840432-58840488- NoOverlap chr20 58840432 58840488 - 3.72535248807 19 0.753441511768 -8.14908431392 11.874436802 ENST00000313949.11,ENST00000371075.7,ENST00000371098.6,ENST00000453292.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;58840431;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58840432-58840488-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A58840432-58840488&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0390282494685 0.668201619454 0.998409082872 57415487 57415543 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;57415486;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58840432-58840488-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A57415487-57415543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQARSRSRSRTRFRTRSRSRSR Same 547334 chr20:58840432-58840488- 1667 1667 124 0 1183 58840432 58840488 Best 1791 1791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:58840432-58840488&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.614035087719 1.86274509804 -6.06072631579 0.9453 -26.8771526316 20.8164263158 0.3592706923 0.998289583755 4545 Best 4545 4545 -4.28437894737 0.3368 -26.5362368421 22.2518578947 0.32401265263 1.09187217677 4408 Best 4408 4408 0.0 0.0 ENST00000443966.2,ENST00000424094.6,ENST00000313949.11 NC,NCintron,AntiCDS not annotated putative regulatory region 1794 479505 chr10:129211045-129211095+ NoOverlap chr10 129211045 129211095 + 4.71686469807 17 0.915913813454 -6.49784116885 11.2147058669 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129211044;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129211045-129211095%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129211045-129211095&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.154280123357 0.667556672261 1.02638835984 131009309 131009359 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131009308;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129211045-129211095%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131009309-131009359&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLPLRTTPPYL*KHRCSYR Same 481410 chr10:129211045-129211095+ 1815 1815 -21 7 1186 129211045 129211095 Best 1794 1794 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129211045-129211095&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.352941176471 0.910714285714 4.58176470588 0.9786 -8.46855882353 13.0503235294 0.503281958685 1.0615461294 3119 Best 3119 3119 -2.82787647059 0.5548 -21.5147882353 18.6869117647 0.304335930892 1.03655271611 4584 Best 4584 4584 0.0 0.0 not annotated putative regulatory region 1796 566048 chr5:148243279-148243326+ NoOverlap chr5 148243279 148243326 + 3.69516878575 16 0.654903868162 -12.719356304 16.4145250898 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;148243278;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A148243279-148243326%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A148243279-148243326&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0490847951893 0.66740614386 0.91534234866 147622842 147622889 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;147622841;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A148243279-148243326%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A147622842-147622889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSSQQGNIGSPSQQEKPESSSQQGNLGSSSYQGKPVSSSQQGKPVSSSQQGKPGASNQQGDLGSSK Same 567043 chr5:148243279-148243326+ 1273 1273 523 0 870 148243009 148243425 1343 1343;1796;7927 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:148243009-148243425&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.541666666667 0.0 7.57615625 0.8974 -18.26089375 25.83705 0.581578227347 0.97791548859 2647 2276 2276;2647;5297 8.1573875 0.6627 -23.547725 31.7051125 0.760408733568 1.01661880213 2601 Best 2601 2601;2893;4151 0.0 0.179567032839 chr1:36097569-36099487- protein-coding gene protein coding gene ENSG00000248109 1797 561020 chr4:6011836-6011898- NoOverlap chr4 6011836 6011898 - 8.05283345779 21 0.668159144332 -1.06312375125 9.11595720904 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;6011835;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6011836-6011898-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A6011836-6011898&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.562166663936 0.667213761672 1.05349571803 6013563 6013625 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;6013562;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6011836-6011898-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A6013563-6013625&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VDQLSTHVAQERSAWLQAQEKLAALQGELASQVPFPSPFQALFPVQQSR Same 562010 chr4:6011836-6011898- 1878 1878 -81 0 128 6008014 6018431 155 155;465;689;1797;5236 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:6008014-6018431&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.730158730159 0.375 15.6912095238 0.8658 -3.12966666667 18.8208761905 0.846788790489 0.984711915487 1484 256 256;423;1173;1484;2527 18.5744666667 0.4408 -5.91342380952 24.4878904762 0.867174801663 1.05740125825 2247 2 2;2247;2302;2304;3145 0.0 0.0 coding exon(s) C4orf50 5' exons 1800 483273 chr11:1109912-1110034+ NoOverlap chr11 1109912 1110034 + 5.76491952342 41 0.596935169626 0.543914754216 5.22100476921 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1109911;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1109912-1110034%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1109912-1110034&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.562819070729 0.66692646785 0.989011040191 1103820 1103942 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1103819;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1109912-1110034%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1103820-1103942&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NETRVPCSTVPVTTEVSYAGCTKTVLMNHCSGSCGTFVM*VPGWECAWR Same 485203 chr11:1109912-1110034+ 1884 1884 -84 1 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.60162601626 0.818181818182 18.6815560976 0.9403 4.01073902439 14.6708170732 1.02953425992 1.01263482146 484 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 12.8684 0.4486 -1.9098195122 14.7782195122 0.922017886595 1.00009801825 2001 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.0594696048159 chr11:1199855-1199969+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 1802 552949 chr3:100211575-100211682+ NoOverlap chr3 100211575 100211682 + 5.20765555898 36 0.819348439765 0.347427715237 4.86022784375 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;100211574;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A100211575-100211682%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A100211575-100211682&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.713075149874 0.666401252542 0.944828305816 99930419 99930526 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;99930418;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A100211575-100211682%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A99930419-99930526&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVFLDFPVTRFHGEKSVVLSTLTWCGGNSLFLGLAYTVTGAMTWLASFAMMAIHIMLK Same 553901 chr3:100211575-100211682+ 1737 1737 65 0 354 100208048 100211682 486 486;1802;4544;9039 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:100208048-100211682&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.490740740741 0.153846153846 14.8880083333 0.9383 3.06200555556 11.8260027778 1.05157369349 1.05398170611 241 Best 241 241;657;2616;3530 43.595375 0.9399 9.08564166667 34.5097333333 0.961506300409 1.02074572343 1682 1055 1055;1450;1488;1682 0.0 0.295789849373 chr14:61280092-61281147- pseudogene TMEM30C converted to a transcribed unitary pseudogene TMEM30CP (ENSG00000235156) due to disablement of the longer isoform, lack of expression data for last 4 exons and PMID:17258408. 1806 539880 chr2:110406679-110406798- NoOverlap chr2 110406679 110406798 - 5.94937236235 40 0.489276722362 -0.274162623286 6.22353498563 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110406678;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110406679-110406798-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110406679-110406798&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.404071825242 0.66572482243 1.03640883102 111164256 111164375 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111164255;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110406679-110406798-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111164256-111164375&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YYFYNH*TTQVAAYFFICVDLALALFEEPELLPLPFLVSKP Same 541240 chr2:110406679-110406798- 1971 1971 -165 7 1194 110397399 110408025 Best 1806 1806;2085;2438;3107;4591;8217;15827;15899 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110397399-110408025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.45 0.504908835905 13.495555 0.7411 3.955075 9.54048 1.00138723052 1.04664675468 726 48 48;279;480;726;1001;1821;1905;2030 28.024985 0.7012 4.3806625 23.6443225 1.04854479884 1.04852908633 350 Best 350 350;364;877;881;1131;1304;1506;1758 0.0 0.0 ENST00000466329.1,ENST00000488671.1 NC,NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000184115) 1809 570160 chr5:179124775-179124939- NoOverlap chr5 179124775 179124939 - 7.71396729133 55 0.362611234802 3.72514368377 3.98882360756 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;179124774;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A179124775-179124939-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A179124775-179124939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.579670999818 0.665420040051 0.935141649765 178551776 178551940 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;178551775;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A179124775-179124939-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A178551776-178551940&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NPPIPCPQLQN*GWTGMQVRSVRCIQPLHNTTTRSVHAKHCNDARPESRRACSSELCPDHWRAGPWSQVSNPLIPCPQLPN Same 571178 chr5:179124775-179124939- 2078 2078 -269 3 353 179121557 179124939 485 485;1809 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:179121557-179124939&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.660606060606 0.727118644068 24.2904127273 0.8235 12.23556 12.0548527273 1.03555587691 1.0252741867 409 Best 409 409;2409 48.0228872727 0.7536 13.2425290909 34.7803581818 0.9796845051 0.988216798423 1431 Best 1431 1431;4201 0.920734341538 chr5:179124973-179125180- 0.711066033933 chr5:179124973-179125180- ENST00000251582.11 CDSintron coding exon(s) ADAMTS2 alternative final exon 1810 486467 chr11:124411362-124411427+ NoOverlap chr11 124411362 124411427 + 4.57996361093 22 0.64825735034 -6.93229527907 11.51225889 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;124411361;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A124411362-124411427%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A124411362-124411427&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.173626948785 0.665394668977 1.00336072425 124281258 124281323 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;124281257;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A124411362-124411427%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A124281258-124281323&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFSTCSSHMVIFAVVYDSTLFTHLK Same 488429 chr11:124411362-124411427+ 1757 1757 53 0 1197 124411362 124411427 Best 1810 1810 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:124411362-124411427&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.363636363636 0.0 6.62702272727 0.7644 -6.7537 13.3807227273 0.589549533311 1.05996658213 2599 Best 2599 2599 8.70192272727 0.2821 -7.20598181818 15.9079045455 0.450302444867 0.98708683565 3731 Best 3731 3731 0.116462001773 chr11:124423942-124424871- 0.0986396595513 chr11:124423942-124424871- not annotated putative regulatory region 1811 538305 chr2:42169275-42169406- NoOverlap chr2 42169275 42169406 - 5.77145219933 44 0.700464012984 1.73312731087 4.03832488846 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;42169274;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A42169275-42169406-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A42169275-42169406&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.742661396548 0.66527234083 0.905299727681 42396415 42396546 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;42396414;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A42169275-42169406-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A42396415-42396546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPRRSAACPASLPGSSRERRAAPRPAPPPRPRAAVAPPRARRHTSDSASHVTPR Same 539680 chr2:42169275-42169406- 1801 1801 10 0 1198 42169275 42169579 Best 1811 1811;3918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:42169275-42169579&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.848484848485 1.23675675676 1.27755454545 0.6861 -0.548879545455 1.82643409091 0.0624499228814 0.600457417552 20863 5197 5197;20863 -1.82751818182 0.2994 -3.538925 1.71140681818 0.0170525620293 0.560782282729 28000 10461 10461;28000 0.0 0.0 ENST00000422013.2,ENST00000318522.9,ENST00000409040.1 NCintron,AntiUTR5,AntiNC not annotated putative regulatory region 1818 504799 chr14:76138651-76138761- NoOverlap chr14 76138651 76138761 - 2.56648916288 37 0.812605601711 -5.50558095526 8.07207011814 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;76138650;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76138651-76138761-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A76138651-76138761&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.13164212399 0.663916145568 1.07583472912 76604994 76605104 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;76604993;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76138651-76138761-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A76604994-76605104&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QFGAFPPLERRLQSNKWERRCAPFFLALNIYCFPFSPSPSLPPPTLPHCPADR Same 506645 chr14:76138651-76138761- 1760 1760 58 0 1204 76131383 76139120 Best 1818 1818;4345;22997;27107;30537;31486;38498;41376;68067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:76131383-76139120&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.522522522523 1.14285714286 -0.587 0.9291 -9.41992162162 8.83292162162 0.360859088697 1.0593653635 4515 Best 4515 4515;9493;16210;27689;28296;48242;62795;67676;71399 -10.0167189189 0.7791 -18.6755864865 8.65886756757 0.0819421640098 0.793449505942 13549 Best 13549 13549;42486;43506;45749;54311;55020;58474;69721;73189 0.0 0.0 not annotated putative regulatory region 1821 572521 chr6:109267806-109267898+ NoOverlap chr6 109267806 109267898 + 5.05980963524 31 0.721121685777 -1.67836122792 6.73817086316 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109267805;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109267806-109267898%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109267806-109267898&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.506248010357 0.66315787383 1.03763989882 109589009 109589101 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109589008;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109267806-109267898%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109589009-109589101&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QFHIFCCRYSPTALVLAISEVDDNQIGKFSFYTKEAILK Same 573548 chr6:109267806-109267898+ 1829 1829 -8 0 198 109254451 109270128 241 241;379;398;784;1262;1279;1591;1821;4627;6101 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109254451-109270128&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.376344086022 0.0 9.85225483871 0.9754 -3.94808387097 13.8003387097 1.00292574221 1.03625266357 712 103 103;138;267;470;609;712;856;2049;2971;3012 16.0134483871 0.7044 -8.58429354839 24.5977419355 1.02743767734 1.05573549742 654 235 235;262;499;654;818;864;1043;1677;1862;2261 0.0 0.0 ENST00000453496.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 1825 531760 chr19:49018130-49018174- NoOverlap chr19 49018130 49018174 - 9.31266009808 15 0.820959792477 -4.53144664764 13.8441067457 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49018129;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49018130-49018174-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49018130-49018174&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.532989886273 0.662800218243 0.990603027203 49521387 49521431 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49521386;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49018130-49018174-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49521387-49521431&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSPVTSAMPHRGALSLAQESYSPLLHPLR Same 533235 chr19:49018130-49018174- 1776 1776 49 0 33 49017965 49020515 34 34;193;1195;1825;2425;7512;24256 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49017965-49020515&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.688888888889 0.378151260504 16.40648 0.9623 -4.69951333333 21.1059933333 0.834016769617 0.97155434372 1538 18 18;246;307;1538;2029;2679;3404 19.58522 0.488 -7.58314666667 27.1683666667 0.776016574961 1.05511809773 2562 76 76;2096;2562;2564;4203;4229;5297 0.0 0.0 protein-coding gene protein-coding gene ENSG00000268655 1826 484450 chr11:57038160-57038243+ NoOverlap chr11 57038160 57038243 + 6.15631427889 28 0.917164764739 0.964928673846 5.19138560504 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57038159;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57038160-57038243%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57038160-57038243&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.749247112687 0.662686534242 0.927479637473 56805635 56805718 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;56805634;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57038160-57038243%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A56805635-56805718&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TINHFFCDEPPIIALPCSNIDLNIMLLTVFVGLNLMCTVMVVIISCIYVLVAILRISSAAGKKKVSLHVPPT Same 486395 chr11:57038160-57038243+ 1808 1808 18 0 338 57037567 57038422 463 463;582;884;1044;1236;1826;3363;6311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57037567-57038422&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.452380952381 0.0 6.68643214286 0.9817 -2.78850357143 9.47493571429 0.756793799324 1.04791995385 1835 346 346;643;688;1159;1835;1855;2138;3085 19.5432214286 0.9532 -16.7408428571 36.2840642857 0.947057950737 0.913476789351 1841 792 792;938;1237;1246;1582;1841;2263;2401 0.106409336404 chr11:56988914-56989843+ 0.257353459442 chr11:123753580-123754518- pseudogene OR5AK4P olfactory receptor family 5 subfamily AK member 4 pseudogene (ENSG00000283307) 1827 476484 chr1:244730558-244730710- NoOverlap chr1 244730558 244730710 - 4.55290386607 51 0.494499421803 -1.50148822572 6.05439209178 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244730557;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244730558-244730710-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244730558-244730710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.327281823671 0.662418321075 1.05058740886 244893860 244894012 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244893859;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244730558-244730710-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244893860-244894012&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QAHARAGKEAPERGLWGPSSLQRLLQRLATWRRRYLRRKERPDRLEEIPLLVLDR Same 478378 chr1:244730558-244730710- 1979 1979 -152 0 1209 244730511 244730827 Best 1827 1827;6442;39659;57601 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244730511-244730827&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.751633986928 0.851576994434 6.45563333333 0.6566 -4.99433529412 11.4499686275 0.863829252121 1.06877057351 1411 Best 1411 1411;4590;49722;61439 5.16073529412 0.4531 -8.94345294118 14.1041882353 0.718038940818 1.01991159478 2751 Best 2751 2751;4783;48536;48762 0.0 0.136664250571 chr4:154489304-154491355- protein-coding gene protein coding gene ENSG00000284188 1829 473757 chr1:116854681-116854716- NoOverlap chr1 116854681 116854716 - 6.54556656877 12 0.809157956308 -9.07630829016 15.6218748589 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;116854680;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A116854681-116854716-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A116854681-116854716&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.152510959746 0.662105016829 0.953256981723 117397303 117397338 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;117397302;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A116854681-116854716-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A117397303-117397338&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLAFTFCIYQMCCVLGSAQIYGHAYA Same 475637 chr1:116854681-116854716- 1626 1626 203 0 1211 116854681 116854716 Best 1829 1829 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:116854681-116854716&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.472222222222 1.0 1.81024166667 0.9562 -10.1953833333 12.005625 0.182892261064 1.03882627612 9554 Best 9554 9554 1.12599166667 0.3115 -10.5161833333 11.642175 0.0718420604085 0.803792958375 14894 Best 14894 14894 0.0 0.0 not annotated putative regulatory region 1830 483248 chr11:1092843-1092959+ NoOverlap chr11 1092843 1092959 + 3.03268972116 39 0.47802681284 -6.46723339344 9.49992311459 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1092842;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1092843-1092959%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1092843-1092959&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0441724291474 0.662080661467 1.04181011895 1090781 1090897 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1090780;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1092843-1092959%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1090781-1090897&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLASPSPPGKILNQTQDGAFCYWEICGPNGTVEKHFNICSITTRPSTLTTFTTITLPTTPTTFTTTTTTTTPTSSTGK Same 485178 chr11:1092843-1092959+ 1921 1921 -91 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.564102564103 0.65 5.85244871795 0.8083 -14.4559948718 20.3084435897 1.04252494444 0.883464410097 337 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 0.963079487179 0.438 -22.2828948718 23.245974359 0.817308966898 1.11437916064 2423 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0480139319564 chr11:1240851-1251743+ 0.0865906332808 chr2:240770971-240771104- ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 1831 492499 chr12:77572192-77572266+ NoOverlap chr12 77572192 77572266 + 6.58952010036 25 0.9355538262 0.705287898779 5.88423220158 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;77572191;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A77572192-77572266%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A77572192-77572266&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.720268576654 0.661792356678 0.961209914741 77965972 77966046 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;77965971;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A77572192-77572266%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A77965972-77966046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FHFEGQEPNVMDLSSEMNRHGKNPVSHKLEDQKK Same 494481 chr12:77572192-77572266+ 1849 1849 -18 0 1212 77572192 77572266 Best 1831 1831 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:77572192-77572266&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4 0.0 6.3436 1.0 0.17204 6.17156 0.584242743608 0.875059801926 2631 Best 2631 2631 10.280224 0.7052 1.939732 8.340492 0.517008515838 0.759338958983 3465 Best 3465 3465 0.0 0.0 ENST00000550042.1 NC coding exon(s) NAV3 alternative first exon 1833 483260 chr11:1105302-1105364+ NoOverlap chr11 1105302 1105364 + 13.87672386 21 0.497632308436 3.00221423876 10.8745096212 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1105301;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1105302-1105364%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1105302-1105364&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.606661392454 0.661404081393 1.03334160876 1099210 1099272 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1099209;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1105302-1105364%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1099210-1099272&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QPSDLCPCPSVVECPSHREYQACGPAEEPTCK Same 485190 chr11:1105302-1105364+ 1828 1828 5 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.650793650794 0.150717703349 26.3477904762 0.9055 5.69133333333 20.6564571429 0.901526290615 1.01812300001 1290 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 36.0300333333 0.7915 -2.0768 38.1068333333 1.04864031141 1.01220819702 344 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.0810882754146 chr11:1196388-1196475+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 1834 510638 chr16:8884401-8884451+ NoOverlap chr16 8884401 8884451 + 9.31864125238 17 0.752895399405 -2.88780582126 12.2064470736 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;8884400;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A8884401-8884451%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A8884401-8884451&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.587131308187 0.661345341131 1.01907335887 8978258 8978308 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;8978257;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A8884401-8884451%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A8978258-8978308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IITVTTFVPGALTWLLCTTLFLFG Same 512275 chr16:8884401-8884451+ 1882 1882 -48 0 955 8884359 8885277 1466 1466;1834;7767 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:8884359-8885277&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.647058823529 0.575187969925 17.9299176471 0.9374 -0.0207941176471 17.9507117647 0.863155442211 1.0056733095 1415 Best 1415 1415;2376;4905 24.7243 0.5277 -1.15787058824 25.8821705882 0.90620801429 1.04931805168 2072 Best 2072 2072;2635;3066 0.0 0.0 protein-coding gene protein coding gene ENSG00000283516 1835 478900 chr10:113119764-113119907+ NoOverlap chr10 113119764 113119907 + 3.42111660788 48 0.933909679306 -2.79865003563 6.21976664352 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113119763;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119764-113119907%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113119764-113119907&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.464794587901 0.661272340345 1.05775860184 114879523 114879666 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114879522;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119764-113119907%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114879523-114879666&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FIGFVCIIMDWIS*VWFSASDYLLAFREMR*NPNMSTTPKRSLFEGAAQNVVSTSAWPPR Same 480801 chr10:113119764-113119907+ 1836 1836 -1 23 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.465277777778 0.641711229947 -0.149445833333 0.998 -4.10881458333 3.95936875 0.242494716975 0.785982649573 7197 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -4.40056458333 0.9078 -10.6595708333 6.25900625 0.177657953554 0.75609442176 6881 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 1841 520014 chr17:4802266-4802322- NoOverlap chr17 4802266 4802322 - 9.62502105613 19 0.773205157549 2.37672632619 7.24829472994 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;4802265;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A4802266-4802322-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A4802266-4802322&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.700847753342 0.660741688719 0.985169021279 4705561 4705617 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;4705560;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A4802266-4802322-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A4705561-4705617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPSWPFPALIASTVEMGLKGAWCFPWCGCRRQR Same 521421 chr17:4802266-4802322- 1799 1799 42 0 454 4801292 4807131 651 651;1841;59725 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:4801292-4807131&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.610714285714 9.61667894737 1.0 1.47953157895 8.13714736842 0.697545032099 0.936458758511 2105 332 332;2105;70127 14.0377263158 0.4502 2.32291578947 11.7148105263 0.550806080766 0.828886139363 3344 389 389;3344;71746 0.0 0.0 ENST00000571067.1 NCintron protein-coding gene protein-coding gene ENSG00000262165 1845 535637 chr2:163348314-163348352+ NoOverlap chr2 163348314 163348352 + 6.10096913691 13 0.933361503835 -6.52593084482 12.6268999817 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;163348313;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A163348314-163348352%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A163348314-163348352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.162370374619 0.659258829223 1.00626477168 164204824 164204862 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;164204823;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A163348314-163348352%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A164204824-164204862&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGSSGSADAEKARVKE*EEFACSEDGSDR Same 537000 chr2:163348314-163348352+ 1837 1837 8 2 1222 163348314 163348757 Best 1845 1845;57864;72442 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:163348314-163348757&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.538461538462 1.4625 7.09970769231 0.9845 -9.42701538462 16.5267230769 0.544624646899 1.01917175097 2837 Best 2837 2837;30400;47745 2.48530769231 0.4369 -13.7794846154 16.2647923077 0.237786094151 0.957431780177 5420 Best 5420 5420;52692;53343 0.0 0.0 not annotated putative regulatory region 1846 500687 chr14:21990718-21990759+ NoOverlap chr14 21990718 21990759 + 8.77266407864 14 0.875411176144 -4.38838578973 13.1610498684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21990717;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21990718-21990759%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21990718-21990759&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.46607393354 0.65870143967 1.0039783468 22458957 22458998 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22458956;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21990718-21990759%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22458957-22458998&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAPVELKCNYSYSGSPELFWYVQYSR None NA NA 0 69 21990718 21990933 78 78;1846;7023 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21990718-21990933&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 12.4092857143 0.7971 -2.36517857143 14.7744642857 0.495919765274 1.0368786322 3170 Best 3170 3170;3353;14300 18.3969857143 0.4767 -8.81267857143 27.2096642857 0.719250244803 1.05540822529 2746 Best 2746 2746;2756;3384 0.0 0.0 ENST00000390444.1 NC immunoglobulin segment overlaps an immunoglobulin region 1850 530980 chr19:35793084-35793188- NoOverlap chr19 35793084 35793188 - 7.55822564874 35 0.580117494469 3.15681434103 4.40141130771 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35793083;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35793084-35793188-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35793084-35793188&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.690121562939 0.657978882771 0.896504175755 36283986 36284090 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36283985;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35793084-35793188-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36283986-36284090&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SMGLGRPKPACPLGVQVDGENSEGQTALFLSALLGHGSAMQLLLAFGAKPNQWLASQ Same 532447 chr19:35793084-35793188- 1910 1910 -60 0 212 35784826 35806955 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.67619047619 0.418660287081 11.2092885714 0.897 3.90186 7.30742857143 0.899552927423 0.978106630303 1295 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 12.0951771429 0.5487 -0.183574285714 12.2787514286 0.807422062208 0.930942569425 2447 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.0932028803705 chr17:58630440-58630554- ENST00000433059.1 NCintron pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 1851 486738 chr11:253470-253517- NoOverlap chr11 253470 253517 - 11.581918776 16 0.799358167391 -4.38562488183 15.9675436579 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;253469;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A253470-253517-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A253470-253517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.653617310591 0.65760636371 0.980178555884 253470 253517 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;253469;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A253470-253517-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A253470-253517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GALTFISFLVPGGWVSPDLESCKSSMLSLQAQD Same 488700 chr11:253470-253517- 1806 1806 45 0 1225 253470 253517 Best 1851 1851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:253470-253517&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.645833333333 0.2 18.85756875 0.9363 -6.75709375 25.6146625 0.787945260414 0.970395074424 1713 Best 1713 1713 27.39959375 0.5458 -13.42489375 40.8244875 0.873041747047 0.978624384436 2220 Best 2220 2220 0.0 0.0 not annotated potentially spurious 1852 512441 chr16:75646606-75646683+ NoOverlap chr16 75646606 75646683 + 7.84259228294 26 0.44273699902 -5.03354630447 12.8761385874 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;75646605;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A75646606-75646683%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A75646606-75646683&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.321117343302 0.65757794447 0.960647825835 75680504 75680581 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;75680503;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A75646606-75646683%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A75680504-75680581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSNSLGKAMEKGSLTQHFWQSLKDHYLK Same 514085 chr16:75646606-75646683+ 1959 1959 -107 0 1226 75646606 75646683 Best 1852 1852 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:75646606-75646683&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.576923076923 0.462450592885 17.4921923077 0.9196 -6.00074230769 23.4929346154 0.986021982945 0.970746504618 865 Best 865 865 17.4921923077 0.2874 -6.00074230769 23.4929346154 0.815423973554 1.05909236228 2429 Best 2429 2429 0.962513964175 chr16:75647883-75648552+ 0.962651206834 chr16:75647883-75648552+ ENST00000302445.7,ENST00000319410.9,ENST00000562875.5 AntiCDSintron,AntiUTR5intron,AntiNCintron pseudo-exon TERF2IP pseudo-exon 1855 511179 chr16:30054796-30054939+ NoOverlap chr16 30054796 30054939 + 5.45351871351 48 0.635801480125 1.02247083467 4.43104787885 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;30054795;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A30054796-30054939%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A30054796-30054939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.63701083751 0.657278323928 0.952566042799 30066117 30066260 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;30066116;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A30054796-30054939%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A30066117-30066260&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSPSHLLVPHGIPVFLQPLSISLSPLPPVLVQASSSPWNPTPAPVSSPPLLLPIPAIVFIAVGIYLLLLGLVLLTRNCLLVRGLVGDK Same 512821 chr16:30054796-30054939+ 1915 1915 -60 0 188 30054796 30063839 226 226;1855;4003 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:30054796-30063839&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.303157894737 11.2740458333 0.9691 2.44721041667 8.82683541667 1.0408182932 1.04505650719 355 253 253;355;456 13.26681875 0.395 0.32463125 12.9421875 0.879503550569 0.966773893913 2196 41 41;2196;2589 0.0 0.0 ENST00000338110.9,ENST00000566280.1,ENST00000566897.5,ENST00000575627.5 UTR5,NC,UTR5intron,NCintron protein-coding gene protein-coding gene ENSG00000285043 1857 549776 chr22:29080550-29080576- NoOverlap chr22 29080550 29080576 - 6.43825552199 9 0.947976908014 -8.22908900181 14.6673445238 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;29080549;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A29080550-29080576-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A29080550-29080576&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0380526809507 0.65697445413 0.973161772971 29476538 29476564 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;29476537;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A29080550-29080576-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A29476538-29476564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGLVISAKTTK Same 551117 chr22:29080550-29080576- 1838 1838 19 0 1230 29080202 29080576 Best 1857 1857;26018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:29080202-29080576&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.0 -0.958522222222 0.9741 -15.0585888889 14.1000666667 0.0644535299025 1.04848392521 20519 Best 20519 20519;50758 -7.861 0.3862 -20.1810444444 12.3200444444 -0.00975560737646 0.772172334598 40784 Best 40784 40784;63595 0.0 0.0 ENST00000327813.9 AntiCDSintron not annotated putative regulatory region 1859 476222 chr1:230281750-230281782- NoOverlap chr1 230281750 230281782 - 5.5079455484 11 0.91847243319 -8.13760018349 13.6455457319 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;230281749;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A230281750-230281782-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A230281750-230281782&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0219972839695 0.656604575141 0.983306303193 230417496 230417528 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;230417495;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A230281750-230281782-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A230417496-230417528&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLWHTVSCKHSSPQR Same 478112 chr1:230281750-230281782- 1805 1805 54 0 1231 230281750 230281782 Best 1859 1859 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:230281750-230281782&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.484848484848 0.52380952381 7.60160909091 0.9594 -6.91669090909 14.5183 0.421024223532 1.03891605199 3791 Best 3791 3791 6.21333636364 0.609 -8.93917272727 15.1525090909 0.329501507408 0.903212707242 4362 Best 4362 4362 0.0 0.0 ENST00000414640.1,ENST00000366672.4,ENST00000485438.1 NC,AntiUTR3,AntiNC not annotated potentially spurious 1860 490631 chr12:9512795-9512938+ NoOverlap chr12 9512795 9512938 + 5.08449367185 48 0.440187495232 -1.35389163687 6.43838530872 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9512794;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9512795-9512938%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9512795-9512938&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.30664067837 0.656602111071 1.0557720523 9665391 9665534 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9665390;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9512795-9512938%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9665391-9665534&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ANENCQAHGWVLPQYPQPEYFAYRFYSKTNSFLKIVQEMEELRCNQQKRVLVHCILNMEDFEDK Same 492607 chr12:9512795-9512938+ 2050 2050 -190 0 666 9480562 9518314 1023 1023;1860;2492;4418;4887;28290;30014;57029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9480562-9518314&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.458333333333 0.396694214876 11.9349854167 0.6453 -1.85258958333 13.787575 1.0878578845 0.997599071068 32 7 7;32;190;2502;3527;4447;12142;19347 19.29584375 0.4015 -6.93050208333 26.2263458333 1.12759732895 1.02009459189 8 4 4;8;122;2361;2406;2774;2953;4665 0.568406420424 chr12:31147881-31148122- 0.546912667847 chr12:31147881-31148122- ENST00000518709.5 NCintron pseudo-exon AC092821.1 pseudo exons 1863 474572 chr1:157205006-157205041- NoOverlap chr1 157205006 157205041 - 6.41275004546 12 0.774157574833 -10.644624869 17.0573749145 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;157205005;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A157205006-157205041-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A157205006-157205041&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.125804580201 0.656401358647 0.949810549525 157174796 157174831 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;157174795;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A157205006-157205041-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A157174796-157174831&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHFSFSFLAPEPIPNPQILINSSSNTSG Same 476451 chr1:157205006-157205041- 1543 1543 320 0 1234 157205006 157205041 Best 1863 1863 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:157205006-157205041&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.0 7.275725 0.5229 -4.33348333333 11.6092083333 0.150553042389 1.02195540031 11546 Best 11546 11546 13.2186416667 0.2393 -2.508875 15.7275166667 0.220925693987 0.902700923444 5727 Best 5727 5727 0.0 0.0 pseudogene uncharacterised pseudogene (ENSG00000284592) 1869 491318 chr12:49033869-49033910+ NoOverlap chr12 49033869 49033910 + 10.1658713477 14 0.883736062518 -3.6586643202 13.8245356679 ENST00000301067.11 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;49033868;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49033869-49033910%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A49033869-49033910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.534544620914 0.655554517071 0.998081951781 49427652 49427693 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49427651;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49033869-49033910%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49427652-49427693&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLLLLLLLLLLLLLLLVPIFCHEISVLLLLFPDLTWEGR Same 493295 chr12:49033869-49033910+ 1780 1780 89 0 27 49020566 49033910 27 27;1869;2293;3141;4665;5179;14171;29832;59889;70464 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:49020566-49033910&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.547619047619 0.0 16.4940071429 0.9224 -6.2485 22.7425071429 0.718855062832 0.963414290587 2014 391 391;2014;2802;4299;4455;6825;32787;42176;48473;48787 16.9582214286 0.7004 -9.88912142857 26.8473428571 0.876028666033 1.05668291364 2210 Best 2210 2210;2935;3946;7899;19234;24986;25843;31483;36637;57651 0.0 0.0263278918533 chr19:55377975-55378203+ ENST00000301067.11 AntiCDS not annotated potentially spurious 1870 481138 chr10:75708229-75708324- NoOverlap chr10 75708229 75708324 - 6.11115628015 32 0.993148222324 1.86398440786 4.2471718723 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75708228;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75708229-75708324-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75708229-75708324&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.776652870651 0.655531355796 0.865098729574 77467987 77468082 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77467986;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75708229-75708324-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77467987-77468082&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFMYSGMKWECVMRERAVAETDRRS*QCGIHPAWWSR Same 483052 chr10:75708229-75708324- 2058 2058 -188 8 1239 75708158 75708438 Best 1870 1870;17029;18044;18790;19389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75708158-75708438&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.489583333333 0.868778280543 3.4119375 0.9966 -1.12071875 4.53265625 0.413409355842 0.801317502766 3862 Best 3862 3862;13782;42906;49661;52248 -2.51043125 0.93 -8.543265625 6.032834375 0.137446782564 0.708310020425 8667 5843 5843;8667;44155;48068;65299 0.0 0.0 ENST00000611255.4,ENST00000593699.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 1871 585821 chr8:10496650-10496718- NoOverlap chr8 10496650 10496718 - 4.51009119594 23 0.785397116045 -4.84836530685 9.35845650279 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;10496649;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10496650-10496718-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A10496650-10496718&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.302813393115 0.655382271098 1.05556353149 10354160 10354228 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;10354159;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10496650-10496718-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A10354160-10354228&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KECAKRINQLSRNMICAWNEPGTNGIFK Same 586758 chr8:10496650-10496718- 1821 1821 50 0 31 10496192 10498809 31 31;380;667;765;1871;8583 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:10496192-10498809&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.478260869565 0.255555555556 6.80590434783 0.865 -7.54775217391 14.3536565217 0.700242227284 1.04566020385 2094 61 61;238;682;997;2094;6527 7.13245217391 0.3117 -8.91273043478 16.0451826087 0.469400369736 0.999891155034 3654 24 24;1365;2041;2153;3654;11606 0.0 0.158444911631 chr16:1228900-1229063- ENST00000521149.2 NCintron protein-coding gene protein-coding gene ENSG00000253649 1873 497833 chr13:24611978-24612046+ NoOverlap chr13 24611978 24612046 + 3.4733651695 23 0.747243590382 -6.89360012697 10.3669652965 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;24611977;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A24611978-24612046%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A24611978-24612046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0918735607593 0.65525799091 1.03583832521 25186116 25186184 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;25186115;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A24611978-24612046%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A25186116-25186184&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MTWQIEDTVDELSEEFSSTAQALELQK Same 499846 chr13:24611978-24612046+ 1803 1803 70 0 1241 24611978 24613986 Best 1873 1873;6120 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:24611978-24613986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.507246376812 0.23 -0.722534782609 0.5779 -11.7982043478 11.0756695652 0.136346887773 1.07461717811 12569 11996 11996;12569 0.775447826087 0.2239 -13.0244652174 13.7999130435 0.215708958517 0.953567960812 5853 Best 5853 5853;15475 0.0 0.0 pseudogene pseudogene ENSG00000285228 1888 571883 chr6:60281444-60281494+ NoOverlap chr6 60281444 60281494 + 9.67697665271 17 0.99606496753 0.716523605234 8.96045304747 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;60281443;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60281444-60281494%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A60281444-60281494&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.629342587126 0.652720576824 1.03465866075 57244699 57244749 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;57244698;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60281444-60281494%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A57244699-57244749&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISDEEKTLREQEIVASSPSLSGLK Same 572907 chr6:60281444-60281494+ 1855 1855 33 0 119 60281444 60283705 143 143;1888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:60281444-60283705&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.411764705882 0.490384615385 9.34337647059 0.9463 -3.56680588235 12.9101823529 0.659018158913 1.05101164105 2263 266 266;2263 8.30615294118 0.5212 -14.4632823529 22.7694352941 0.643103785679 1.06961414612 3010 1383 1383;3010 0.993396803376 chr6:57379901-57379996+ 0.966483778603 chr6:57379901-57379996+ pseudogene DNA primase subunit 2 (PRIM2) unprocessed pseudogene (ENSG00000283453) 1889 588109 chr8:142573733-142573786- NoOverlap chr8 142573733 142573786 - 10.8763109777 18 0.664098064647 -0.723405440648 11.5997164183 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;142573732;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142573733-142573786-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A142573733-142573786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.62952707017 0.652637772715 1.03196152074 143655094 143655147 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;143655093;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142573733-142573786-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A143655094-143655147&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALAANLQLARKVITLLYMKLKLRPPQELISPNPQAQLISLLVSGTR Same 589054 chr8:142573733-142573786- 2025 2025 -136 0 902 142572180 142575904 1386 1386;1889;2097;3879;8408;13162;50093;62741 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:142572180-142575904&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.395604395604 13.7856888889 0.864 -4.75926666667 18.5449555556 0.744996691602 0.989079042783 1898 1388 1388;1898;2170;2516;2563;4680;8183;28509 11.9040611111 0.4273 -11.2526777778 23.1567388889 0.671901978827 1.06342725895 2925 Best 2925 2925;3250;3308;3738;3861;3909;7574;37771 0.0 0.121605581764 chr17:28632049-28632239- pseudogene extension MROH4P 6 new exons at 5' end 1890 494105 chr12:3303776-3303862- NoOverlap chr12 3303776 3303862 - 8.71739318247 29 0.546196688792 3.63972420734 5.07766897514 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3303775;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3303776-3303862-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3303776-3303862&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.640298732007 0.652389759189 0.91662514123 3412942 3413028 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3412941;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3303776-3303862-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3412942-3413028&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPPVPDSGCKAVVALCSQPAHPSNICKGVVSAPAQAGDK Same 496100 chr12:3303776-3303862- 1977 1977 -87 0 531 3298233 3307795 799 799;1890;3339;6900;15956;21198;23499 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3298233-3307795&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.67816091954 0.4 17.1077137931 0.9979 6.13375517241 10.9739586207 1.05524964155 1.04686531321 197 Best 197 197;419;1376;1520;1852;2555;9275 31.9826103448 0.7539 11.3801034483 20.6025068966 1.06025269267 1.02334521483 223 Best 223 223;711;903;924;1207;1939;10886 0.820118878068 chr12:30982532-30982690+ 0.852520302649 chr12:30982532-30982690+ pseudogene tetraspanin 11 (TSPAN11) pseudogene (ENSG00000250770); single locus on multiple rows 1891 539236 chr2:73081396-73081452- NoOverlap chr2 73081396 73081452 - 7.03381049947 19 0.880796520943 -1.75294223624 8.78675273571 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;73081395;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73081396-73081452-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A73081396-73081452&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.56680440158 0.651767574286 1.05063115621 73308524 73308580 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;73308523;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73081396-73081452-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A73308524-73308580&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLSSLGINQEAHGFVSLHSLDVSPQVESDPAALPHHLPCSPWAPAPPTPAPTAAPMLSTNLFAAASPAAATAAAAATTAAPEATPPGLLGLTNPFLTSLQSNPFFEELIADIALNSPSPAPSLPSASR Same 540614 chr2:73081396-73081452- 1834 1834 57 0 311 73071669 73081530 418 418;1129;1310;1891;4235;7622;14465;18194;23824;54581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:73071669-73081530&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.561403508772 0.518181818182 9.94447368421 0.9929 -1.98732631579 11.9318 0.788144409803 1.04961429419 1711 166 166;734;1495;1711;1973;3802;9955;14922;47668;73713 16.8959473684 0.8869 -7.77275263158 24.6687 0.854834162114 1.05872074697 2300 Best 2300 2300;2572;2797;3173;3182;4993;30735;31537;41635;57875 0.0 0.155828235312 chr8:37871278-37873179- ENST00000479196.1,ENST00000258098.6,ENST00000482554.5 NC,CDSintron,NCintron coding exon(s) RAB11FIP5 2kb cassette exon 1893 506908 chr15:61034459-61034494+ NoOverlap chr15 61034459 61034494 + 6.31455019116 12 0.933797461916 -6.76955848932 13.0841086805 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;61034458;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A61034459-61034494%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A61034459-61034494&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132589473629 0.651675185288 0.999038050194 61326658 61326693 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;61326657;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A61034459-61034494%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A61326658-61326693&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLLNDNYSSLLFPVKKPLTSIQK Same 508627 chr15:61034459-61034494+ 1871 1871 22 0 1255 61034459 61034494 Best 1893 1893 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:61034459-61034494&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.305555555556 0.0 -8.13124166667 0.9778 -23.1144333333 14.9831916667 0.0782706099899 1.04866310899 18511 Best 18511 18511 -10.1139833333 0.3717 -24.1412333333 14.02725 0.0297098659207 0.83406204933 23844 Best 23844 23844 0.0 0.0 ENST00000335670.10,ENST00000551975.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 1895 580965 chr7:32428030-32428137- NoOverlap chr7 32428030 32428137 - 6.97884171373 36 0.800957503624 4.65261391757 2.32622779616 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;32428029;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A32428030-32428137-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A32428030-32428137&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.931702008359 0.651400696426 0.665725318918 32467642 32467749 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;32467641;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A32428030-32428137-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A32467642-32467749&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAHLGPARPAEMGSVSSALARSRKAVVQSGSLPPQPEAPPAAPVAVGDPFALPK Same 581935 chr7:32428030-32428137- 1880 1880 15 0 1256 32428030 32428137 Best 1895 1895 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:32428030-32428137&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.712962962963 0.948648648649 10.6040583333 0.9317 5.40423611111 5.19982222222 0.846988463068 0.86107930836 1483 Best 1483 1483 11.675375 0.3884 4.29544722222 7.37992777778 0.56339506653 0.77234285812 3291 Best 3291 3291 0.0 0.0 not annotated putative regulatory region 1899 510481 chr16:3144015-3144065+ NoOverlap chr16 3144015 3144065 + 8.34256495448 17 0.878400854505 -1.26238828021 9.60495323469 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3144014;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144015-3144065%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3144015-3144065&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.589837123727 0.650679086626 1.04963702749 3194016 3194066 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3194015;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144015-3144065%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3194016-3194066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AWCLEEAPSRPMAFLVAGTLRLATQMADTR Same 512123 chr16:3144015-3144065+ 1820 1820 79 0 256 3144015 3150751 334 334;814;1899;3328;3506;5705;11798;14824;15461;50287;55094 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3144015-3150751&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.686274509804 0.335526315789 15.7660882353 0.9871 1.15305294118 14.6130352941 0.911916562163 1.03577864311 1262 167 167;1186;1262;1661;1809;1880;2134;2541;2601;5815;43459 12.3347705882 0.5338 -6.56207647059 18.8968470588 0.67992493505 1.01127730072 2882 1889 1889;2882;2930;3314;3490;3499;6163;6623;16490;31726;59008 0.0 0.0235391449986 chr19:7519243-7520949+ pseudogene extension CASP16P pseudogene extended (ENSG00000228146) 1900 549805 chr22:29480974-29481069- NoOverlap chr22 29480974 29481069 - 2.24373130314 32 0.725185969329 -6.88961569977 9.13334700291 ENST00000310624.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;29480973;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A29480974-29481069-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A29480974-29481069&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.029671091249 0.650537858084 1.06199376387 29876963 29877058 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;29876962;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A29480974-29481069-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A29876963-29877058&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRHVALQGVARLGLHLRLRGAGALDLAEQLAHLFLVVAPQVAALLLQR Same 551146 chr22:29480974-29481069- 1919 1919 -19 0 1260 29480974 29481069 Best 1900 1900 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:29480974-29481069&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.739583333333 1.23076923077 -5.071628125 0.8893 -17.28763125 12.216003125 0.257573921067 1.07982351122 6725 Best 6725 6725 -17.6369125 0.8552 -41.276228125 23.639315625 0.227531858354 1.03163749296 5603 Best 5603 5603 0.0 0.0 ENST00000634116.1,ENST00000310624.6 NC,AntiCDS not annotated putative regulatory region 1904 510850 chr16:20711460-20711675+ NoOverlap chr16 20711460 20711675 + 4.39269302785 72 0.525929528751 -0.0667069536737 4.45939998153 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20711459;216;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20711460-20711675%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20711460-20711675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.484316556601 0.649538665983 0.980090784075 20722782 20722997 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20722781;216;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20711460-20711675%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20722782-20722997&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FCLVSFPGIVFMPGTIQLTAKYILYRLQASKAKCIVASEEVVPVVESIALECPDFKTKLLVSPQSRNRWLSFQELFQ Same 512488 chr16:20711460-20711675+ 1841 1841 63 0 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.523148148148 0.135338345865 11.4866263889 0.9177 1.41193611111 10.0746902778 1.01044136969 1.05154522876 651 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 31.1814972222 0.7131 1.08320833333 30.0982888889 0.901146916467 1.02316738316 2098 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.861277766509 chr12:7310539-7310746+ 0.830138021398 chr12:7310539-7310746+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 1905 516232 chr17:7428927-7429052+ NoOverlap chr17 7428927 7429052 + 4.58429763502 42 0.806389533764 -0.224700031536 4.80899766655 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7428926;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7428927-7429052%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7428927-7429052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.645545375814 0.649330874767 0.965066081527 7332246 7332371 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7332245;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7428927-7429052%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7332246-7332371&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AYHGAQVCSGTNPRKCQDLGDSILLLLGSFILLNVWINVVTLVRAGSG Same 517606 chr17:7428927-7429052+ 1845 1845 60 0 708 7420340 7438334 1096 1096;1905;1920;2283;5350;13988;14787;48569;72692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7420340-7438334&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.206388206388 9.29655952381 0.9886 1.80647857143 7.49008095238 0.964026030382 1.01184172044 1008 Best 1008 1008;1355;2074;2394;2819;5308;13112;27391;64992 5.60328333333 0.4733 -2.3086547619 7.91193809524 0.481180258118 0.820285929766 3602 Best 3602 3602;3907;7062;7245;8899;17053;24490;30052;59755 0.0 0.0722122183614 chr19:42407976-42408121- ENST00000575310.1 NCintron protein-coding gene protein-coding gene ENSG00000283439 1906 530975 chr19:35791768-35791848- NoOverlap chr19 35791768 35791848 - 5.6618222368 27 0.653030187432 -2.1524704187 7.8142926555 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35791767;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35791768-35791848-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35791768-35791848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.428245538217 0.649233329765 1.05426846677 36282670 36282750 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36282669;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35791768-35791848-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36282670-36282750&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APSSQACTAPPLFSSLLWMGHKMTVQQPKAPGTQTDVLLADLQHCR Same 532442 chr19:35791768-35791848- 1999 1999 -93 0 212 35784826 35806955 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.567901234568 0.153409090909 9.06592222222 0.8736 1.23870740741 7.82721481481 0.689206203625 0.975171796346 2132 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 0.589592592593 0.489 -9.68555185185 10.2751444444 0.304683865951 0.857650597439 4582 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.103287428139 chr1:16250670-16251785- ENST00000433059.1 NC pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 1908 597190 chrX:130515787-130515849- NoOverlap chrX 130515787 130515849 - 5.51990951811 21 0.780764186349 -3.89274292475 9.41265244285 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;130515786;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A130515787-130515849-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A130515787-130515849&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.401250986165 0.648709821627 1.05485289676 129649761 129649823 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;129649760;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A130515787-130515849-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A129649761-129649823&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VICPLKELSKYRQYVTSLKLDFER Same 597840 chrX:130515787-130515849- 1883 1883 25 0 585 130515787 130523549 894 894;1418;1908 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:130515787-130523549&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.349206349206 0.0 14.3796428571 0.9655 -4.43330952381 18.812952381 0.948126186149 0.980476709846 1101 889 889;1101;1197 13.6460238095 0.5662 -9.2488047619 22.8948285714 0.873766240317 1.06234517482 2218 2029 2029;2218;2591 0.124575839896 chr2:185744322-185744411+ 0.258442455116 chr2:185744322-185744411+ ENST00000458525.1 NC pseudogene extension fibrous sheath interacting protein 2 (FSIP2) pseudogene extended (ENSG00000274775) 1909 520387 chr17:8311412-8311480- NoOverlap chr17 8311412 8311480 - 3.23910871573 23 0.873149760666 -6.71194340483 9.95105212056 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8311411;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8311412-8311480-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8311412-8311480&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0703961432 0.648697864642 1.04631465055 8214730 8214798 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8214729;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8311412-8311480-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8214730-8214798&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLPFRIIFSLLFLPSRFLEPLTPGDEEVLAR Same 521797 chr17:8311412-8311480- 1920 1920 -11 0 1265 8311412 8311480 Best 1909 1909 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8311412-8311480&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.478260869565 0.518796992481 -0.696130434783 0.9977 -7.09695652174 6.40082608696 0.151581687233 0.86518338403 11467 Best 11467 11467 -5.45782173913 0.4787 -11.0840608696 5.62623913043 0.0342537268971 0.634261509409 22503 Best 22503 22503 0.0 0.0 ENST00000361926.7,ENST00000455564.3 AntiUTR5intron,AntiNCintron not annotated low complexity region 1910 495346 chr12:52721165-52721284- NoOverlap chr12 52721165 52721284 - 4.31905494928 40 0.588555733577 -2.35612499919 6.67517994847 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52721164;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52721165-52721284-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52721165-52721284&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.312051553014 0.648668619753 1.05656729544 53114949 53115068 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;53114948;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52721165-52721284-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A53114949-53115068&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLSDLGGFLGGIQEVTVNQSLLQPLQETDLKFGQVKAQKREQIKTLNNVCLLHR Same 497344 chr12:52721165-52721284- 2084 2084 -174 0 536 52721165 52729639 810 810;1910;17559;33017;63856 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52721165-52729639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.541666666667 0.113636363636 9.759205 0.9771 -6.0404875 15.7996925 1.07021354951 0.962151373186 82 67 67;82;632;969;1304 28.2167 0.7568 -11.19619 39.41289 1.0236906613 0.909491486261 726 120 120;301;726;749;1933 0.433378977969 chr12:52776692-52777291- 0.402607457664 chr12:52795398-52796042- pseudogene extension KRT125P (ENSG00000258036) and KRT126P (ENSG00000257402) extended, i.e. two distinct keratin pseudogenes within the same genomic window 1912 569170 chr5:140573989-140574033- NoOverlap chr5 140573989 140574033 - 3.67517329852 15 0.91009079118 -8.43421332041 12.1093866189 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140573988;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140573989-140574033-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140573989-140574033&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.119672026256 0.648614149369 1.00166218282 139953574 139953618 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139953573;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140573989-140574033-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139953574-139953618&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FTWSVPLLGSSLSLLQAALLGASGR Same 570183 chr5:140573989-140574033- 1941 1941 -29 0 157 140570090 140575575 188 188;325;1178;1912;10102;11098 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140570090-140575575&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.622222222222 0.0 4.12509333333 0.9956 -8.81472 12.9398133333 0.43681598151 1.05702646116 3638 143 143;737;966;1745;2012;3638 7.62106 0.4349 -11.94782 19.56888 0.456089034924 1.02881783306 3706 94 94;445;458;3312;3430;3706 0.0 0.102688685802 chrX:153942855-153943079- ENST00000513766.2,ENST00000507279.5 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 1920 516238 chr17:7432601-7432699+ NoOverlap chr17 7432601 7432699 + 4.91291812694 33 0.695789203548 -1.53313631542 6.44605444236 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7432600;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7432601-7432699%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7432601-7432699&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.478468994533 0.647304742872 1.03235030439 7335920 7336018 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7335919;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7432601-7432699%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7335920-7336018&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHCPGPGTQAGHVVFDARQRRLAVGKDKCEALSPRR Same 517612 chr17:7432601-7432699+ 1975 1975 -55 0 708 7420340 7438334 1096 1096;1905;1920;2283;5350;13988;14787;48569;72692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7420340-7438334&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606060606061 0.339428571429 6.03587575758 0.9838 -1.05497575758 7.09085151515 0.703627342771 0.97878117793 2074 1008 1008;1355;2074;2394;2819;5308;13112;27391;64992 6.27969393939 0.3696 -2.41602424242 8.69571818182 0.409621009103 0.821179595108 3907 3602 3602;3907;7062;7245;8899;17053;24490;30052;59755 0.0 0.0 ENST00000575310.1 NCintron protein-coding gene protein-coding gene ENSG00000283439 1921 503793 chr14:34969171-34969233- NoOverlap chr14 34969171 34969233 - 6.72653804507 21 0.887178425196 -0.904833265713 7.63137131078 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;34969170;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34969171-34969233-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A34969171-34969233&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.612765983777 0.647222560133 1.03171318077 35438377 35438439 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;35438376;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34969171-34969233-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A35438377-35438439&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIDSLYEKGKMSRNYCMMCSSHQTATLGR Same 505636 chr14:34969171-34969233- 1876 1876 45 0 551 34954880 34969313 836 836;1153;1921;2166;5306;5436 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:34954880-34969313&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.412698412698 0.0 13.7748095238 0.9931 2.21696666667 11.5578428571 0.935975670321 1.04085152923 1162 816 816;1162;1336;1486;1625;4048 26.9161809524 0.724 2.62168571429 24.2944952381 1.04610932149 1.04558923567 390 Best 390 390;1335;1542;1847;2704;3383 0.0 0.0 ENST00000554945.1 NC pseudogene unitary pseudogene ENSG00000258704 1927 531462 chr19:45234195-45234836- NoOverlap chr19 45234195 45234836 - 5.88205889835 214 0.257078439216 3.37640840746 2.50565049089 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;45234194;642;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A45234195-45234836-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A45234195-45234836&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.551938219949 0.646190731549 0.84040127449 45737453 45738094 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;45737452;642;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A45234195-45234836-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A45737453-45738094&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FAPAVLEILSLIQQRELARADEHILELEAEELAPSRGGAPGPPKAEGAGGGRRARDVALLYEALQRELWALVRETLAGPGPGACAGAGAVAQLGQVLVQEEAADGRRGPGAARKLRARWAEAVARAARERLEAAAPGAPGGLAGQLEALRARLLEDMAVVRGRLAPAYPAGLGAFGVYLRGYHGALAEWLGASARRRLPLADRYALLHWHNQVYPR Same 532934 chr19:45234195-45234836- 1844 1844 83 0 29 45234195 45239048 29 29;1927 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:45234195-45239048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.780373831776 0.92250314831 10.3562369159 0.5146 5.3152271028 5.04100981308 0.859019500841 0.894558171803 1433 1051 1051;1433 17.0138878505 0.6805 -2.42775560748 19.4416434579 1.06300549078 1.03695231178 204 Best 204 204;1434 0.0 0.181642829459 chr3:50358213-50359063- ENST00000413988.1,ENST00000587566.5 UTR5,AntiUTR5intron coding exon(s) EXOC3L2 extended 5' by two coding exons 1938 520314 chr17:7915534-7915578- NoOverlap chr17 7915534 7915578 - 12.4822465261 15 0.854093232624 -2.48085340659 14.9630999327 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7915533;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7915534-7915578-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7915534-7915578&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.639674759883 0.645136666587 0.997011420082 7818852 7818896 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7818851;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7915534-7915578-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7818852-7818896&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PFFFPPVLYCAEIKDIGHLTR Same 521724 chr17:7915534-7915578- 1896 1896 42 0 320 7909339 7916216 436 436;1938;4281;5688;13182;72031;73071;73673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7909339-7916216&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.577777777778 0.532544378698 14.71048 0.9766 -0.37446 15.08494 0.829059105863 1.03245600329 1564 349 349;1564;1761;1828;15031;19061;29084;43318 10.34668 0.4535 -2.07402 12.4207 0.389626859371 0.83575725521 4021 2836 2836;3263;3677;4021;11908;12386;65199;71655 0.0 0.0 ENST00000324348.7 NC protein-coding gene protein-coding gene ENSG00000179859 1939 557797 chr3:184500020-184500067- NoOverlap chr3 184500020 184500067 - 6.86543128639 16 0.854409857328 -4.2787501351 11.1441814215 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;184500019;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184500020-184500067-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A184500020-184500067&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.408478421792 0.64499566662 1.03599445835 184217808 184217855 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;184217807;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184500020-184500067-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A184217808-184217855&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSWQHITMYEFFMLTGVVDIVSQSCQEW Same 558768 chr3:184500020-184500067- 1869 1869 70 0 22 184499610 184500370 22 22;541;811;1939;2622;7155;17966 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:184499610-184500370&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.479166666667 0.727272727273 16.0088125 0.9836 -1.11331875 17.12213125 0.899706594892 1.01401280425 1294 35 35;97;1016;1294;1807;1985;2257 20.08099375 0.4745 -1.6535375 21.73453125 0.769657635471 1.02342355365 2581 17 17;96;2057;2581;2827;2852;3634 0.0 0.309602713829 chr1:182399664-182400485- ENST00000444495.1 AntiCDSintron pseudogene transmembrane epididymal protein 1 (TEDDM1) pseudogene (ENSG00000283625) 1940 553608 chr3:141721068-141721094+ NoOverlap chr3 141721068 141721094 + 10.8172110981 9 0.954095775794 -9.00496683518 19.8221779333 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;141721067;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141721068-141721094%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A141721068-141721094&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.258107507923 0.644590819285 0.965141584499 141439910 141439936 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;141439909;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141721068-141721094%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A141439910-141439936&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EIDLGNNVLGEMAAANILEALRARK Same 554557 chr3:141721068-141721094+ 2014 2014 -74 0 225 141713327 141738361 281 281;1940;3192;3717;12103 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:141713327-141738361&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.675 8.8175 0.9674 -12.4158555556 21.2333555556 0.430354808079 0.961016053989 3697 1721 1721;2098;2147;3697;14992 14.5861555556 0.4342 -12.2968555556 26.8830111111 0.428186714036 1.05292993088 3826 2737 2737;2887;3244;3826;36452 0.0 0.0 ENST00000474979.3 NC redundant PhyloCSF signals are accounted for elsewhere on the list 1941 548833 chr22:40636919-40636954+ NoOverlap chr22 40636919 40636954 + 4.59109181166 12 0.948343124539 -8.29170010487 12.8827919165 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;40636918;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A40636919-40636954%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A40636919-40636954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.112916199693 0.644501487672 0.993571460664 41032923 41032958 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;41032922;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A40636919-40636954%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A41032923-41032958&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDDLISEESLELAELR Same 550203 chr22:40636919-40636954+ 2047 2047 -106 0 1285 40636406 40636954 Best 1941 1941;2100;64710 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:40636406-40636954&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.0 -1.19969166667 0.9411 -18.5351666667 17.335475 0.200728548617 1.03439452322 8739 4778 4778;8739;61564 -3.18915833333 0.3622 -20.1137333333 16.924575 0.110316868578 0.962937350827 10608 6418 6418;10608;37470 0.0 0.141647374643 chr14:104104622-104104735+ not annotated putative regulatory region 1942 514460 chr16:56191699-56191809- NoOverlap chr16 56191699 56191809 - 6.24199736441 37 0.463961283325 -0.368654000598 6.610651365 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;56191698;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191699-56191809-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A56191699-56191809&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.362035657499 0.644484890297 1.04277454368 56225611 56225721 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;56225610;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191699-56191809-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A56225611-56225721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCRRRRRRRRRRRRWRRRRRRRGMWRE*VRGCC*CMCIAALQPSVRPR Same 516112 chr16:56191699-56191809- 2137 2137 -195 11 1286 56191313 56194112 Best 1942 1942;3444;31465;36646;38456;47043;50502;59548;64898;65693 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:56191313-56194112&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.72972972973 1.1746031746 2.29194324324 0.6109 -5.6669972973 7.95894054054 0.294764372365 1.03930603483 5744 Best 5744 5744;16309;26528;60646;61684;66065;68363;69167;72514;73281 -5.2912027027 0.3545 -15.788772973 10.4975702703 0.173001676814 0.892529147866 7040 Best 7040 7040;17639;26908;52826;54474;57942;62845;66974;67638;71986 0.0 0.0262428520166 chr15:43421794-43422126- ENST00000262493.10 AntiUTR5 not annotated putative regulatory region 1943 539520 chr2:89626141-89626332- NoOverlap chr2 89626141 89626332 - 6.48473284952 64 0.348607614252 2.01847656653 4.46625628299 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89626140;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89626141-89626332-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89626141-89626332&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.504952929461 0.644048418731 0.982138310585 91888386 91888577 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91888385;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89626141-89626332-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91888386-91888577&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CINHMDWLFLLQITKVVLSKGWRCLECTVCEACGKATDPGRLLLCDDCDIIYHTYCLDPPLQTVPKGGWKCKWFSR Same 540875 chr2:89626141-89626332- 2146 2146 -203 0 1126 89622214 89637657 1710 1710;1943;6332;11544;19922;20755;36821;56146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89622214-89637657&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.484375 0.0 17.1577390625 0.7616 8.086384375 9.0713546875 1.09083568301 1.02856819763 23 Best 23 23;45;328;857;1530;2184;2340;8004 48.295153125 0.9235 21.3252265625 26.9699265625 0.970698363495 1.00493790758 1567 334 334;1274;1390;1454;1567;1631;1812;2090 0.94646775137 chr7:152224435-152224616- 0.807431283547 chr7:152224435-152224616- pseudogene lysine (K)-specific methyltransferase 2C (KMT2C) pseudogene (ENSG00000283132) 1948 534948 chr2:121382114-121382155+ NoOverlap chr2 121382114 121382155 + 6.03842867698 14 0.889397159642 -6.16360007865 12.2020287556 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;121382113;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A121382114-121382155%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A121382114-121382155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.215540008358 0.643320749809 1.01378898585 122139690 122139731 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;122139689;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A121382114-121382155%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A122139690-122139731&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPHWRQLRGFPKDLRRPWK Same 536300 chr2:121382114-121382155+ 1885 1885 63 0 1291 121382114 121382155 Best 1948 1948 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:121382114-121382155&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.547619047619 0.318181818182 -3.15048571429 0.9639 -9.47172142857 6.32123571429 -0.0141986499072 0.778934601782 50036 Best 50036 50036 -12.6834214286 0.5003 -22.0658071429 9.38238571429 -0.014617016538 0.662502251766 44020 Best 44020 44020 0.0 0.0 ENST00000263710.8,ENST00000472776.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 1950 484037 chr11:32380093-32380125+ NoOverlap chr11 32380093 32380125 + 8.41301848672 11 0.874472349959 -7.48342734575 15.8964458325 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;32380092;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A32380093-32380125%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A32380093-32380125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.267561186819 0.64307777735 0.963538453205 32401639 32401671 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;32401638;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A32380093-32380125%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A32401639-32401671&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILLRGWSLHISASR Same 485976 chr11:32380093-32380125+ 1823 1823 127 0 1293 32380093 32380125 Best 1950 1950 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:32380093-32380125&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.545454545455 0.4125 1.45273636364 0.9239 -14.7634 16.2161363636 0.201256278551 1.03601994114 8717 Best 8717 8717 -2.73699090909 0.679 -20.9830909091 18.2461 0.17832378571 0.988208460649 6851 Best 6851 6851 0.0 0.0 not annotated putative regulatory region 1951 524598 chr18:54415278-54415334+ NoOverlap chr18 54415278 54415334 + 7.7004210447 19 0.780633088787 -1.17005795868 8.87047900338 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;54415277;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54415278-54415334%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A54415278-54415334&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.579557387181 0.642989215274 1.04976342164 51941648 51941704 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;51941647;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54415278-54415334%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A51941648-51941704&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VNIFLVCLLACIITTAVGVLMLSLVYISNSCR Same 526034 chr18:54415278-54415334+ 1946 1946 5 0 663 54415278 54424623 1020 1020;1399;1951;1974;2187;2640;3987;7059;26481;56311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:54415278-54424623&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.526315789474 0.0 12.3896789474 0.9445 -3.47655789474 15.8662368421 0.835716589953 1.02569441008 1532 1312 1312;1532;1793;1867;1963;3255;3308;3468;3714;4481 21.5859578947 0.6111 -3.29737894737 24.8833368421 0.97975972725 1.05281459525 1426 85 85;217;311;1380;1426;2121;2398;2457;2578;2838 0.146719870359 chr18:54597813-54598145+ 0.0708807550144 chr18:54597813-54598145+ pseudogene unitary pseudogene ENSG00000283613 1953 552967 chr3:101677113-101677166+ NoOverlap chr3 101677113 101677166 + 11.615483337 18 0.889583174385 7.40073345436 4.21474988262 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;101677112;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A101677113-101677166%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A101677113-101677166&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.758758548555 0.642741152339 0.679299418333 101395957 101396010 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;101395956;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A101677113-101677166%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A101395957-101396010&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNCTSPARGIRWRLTKWLLHHRK*R Same 553919 chr3:101677113-101677166+ 1903 1903 50 1 1295 101676348 101677166 Best 1953 1953;24447 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:101676348-101677166&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.648148148148 1.05882352941 3.23562222222 0.989 1.47763888889 1.75798333333 0.126085660051 0.444607989445 13433 Best 13433 13433;40033 -4.15671111111 0.8652 -6.24255555556 2.08584444444 -0.0095356455672 0.458471510413 40655 Best 40655 40655;44199 0.0 0.0 ENST00000609682.1,ENST00000312938.4 NC,AntiUTR5 not annotated putative regulatory region 1954 466064 chr1:86505903-86505965+ NoOverlap chr1 86505903 86505965 + 9.7246380051 21 0.601950248322 -7.96067132269 17.6853093278 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;86505902;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A86505903-86505965%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A86505903-86505965&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.602934134688 0.642534598967 0.989382991938 86971586 86971648 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;86971585;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A86505903-86505965%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A86971586-86971648&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGIPSNSASQAIVK*AHQTLK Same 467924 chr1:86505903-86505965+ 1700 1700 254 6 374 86505354 86506381 521 521;1954;4201;8562;51150 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:86505354-86506381&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.380952380952 0.0 2.22506190476 0.133 -5.36230952381 7.58737142857 0.0496548253268 0.938438967608 23228 19199 19199;22222;23228;25766;26963 14.5315142857 0.1992 -12.5489714286 27.0804857143 0.581781897813 1.05493288191 3220 2191 2191;3220;3562;5167;30592 0.0 0.0 not annotated fragments of a reteroviral ORF 1961 478511 chr10:101050227-101050298+ NoOverlap chr10 101050227 101050298 + 8.9005334427 24 0.772760102744 5.45630425836 3.44422918434 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;101050226;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A101050227-101050298%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A101050227-101050298&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.8307859085 0.641357147121 0.697515798892 102809984 102810055 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102809983;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A101050227-101050298%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102809984-102810055&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRRIMGRLL*GGSWLGIRPASDSR Same 480406 chr10:101050227-101050298+ 1926 1926 35 10 1302 101050227 101050298 Best 1961 1961 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:101050227-101050298&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.708333333333 0.886153846154 0.792779166667 0.9624 -0.142758333333 0.9355375 0.0404167173449 0.416029251214 25449 Best 25449 25449 -4.484275 0.5292 -3.910475 -0.5738 -0.0250372234532 0.384159388494 52548 Best 52548 52548 0.0 0.0 not annotated putative regulatory region 1963 487500 chr11:28566878-28566937- NoOverlap chr11 28566878 28566937 - 8.03991502374 20 0.945681696803 1.2852400057 6.75467501804 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;28566877;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A28566878-28566937-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A28566878-28566937&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.686218365539 0.641149633655 0.978314981032 28588425 28588484 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;28588424;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A28566878-28566937-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A28588425-28588484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEHGDKYRGCERCRWDYQ*RANGCSGNL Same 489470 chr11:28566878-28566937- 1969 1969 -6 5 1304 28566878 28566937 Best 1963 1963;50463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:28566878-28566937&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.516666666667 1.05263157895 0.510335 0.9875 -3.736105 4.24644 0.0987418805157 0.680459920348 15982 Best 15982 15982;59622 1.73688 0.7029 -2.640005 4.376885 0.129526988559 0.57599219679 9176 Best 9176 9176;41529 0.0 0.0 not annotated putative regulatory region 1970 564501 chr5:77844392-77844562+ NoOverlap chr5 77844392 77844562 + 4.26878945085 57 0.902799227412 0.322045533281 3.94674391757 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;77844391;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77844392-77844562%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A77844392-77844562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.681028021384 0.639664473452 0.929352053281 77140216 77140386 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;77140215;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77844392-77844562%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A77140216-77140386&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLEALGGCRLCRSALIDIERAAGRREQGRCWIICSLISVCNESG*LGLLEIKESYKERLSESGDNSGLIVVISANWMTLGFANAK Same 565489 chr5:77844392-77844562+ 1891 1891 79 14 1311 77844392 77852299 Best 1970 1970;21990;36224;37985;59349;64374;70990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:77844392-77852299&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.497076023392 0.84236453202 1.1662245614 0.9991 0.152624561404 1.0136 0.226907384454 0.543032130828 7731 Best 7731 7731;27249;28623;33111;43677;53467;56140 -0.434512280702 0.9117 -4.50524561404 4.07073333333 0.252870116187 0.68276102683 5174 Best 5174 5174;34772;36018;49756;55548;66524;72923 0.0 0.0 ENST00000522370.1 AntiUTR5intron not annotated putative regulatory region 1971 579480 chr7:134209804-134209851+ NoOverlap chr7 134209804 134209851 + 10.0030498505 16 0.826638437476 -0.658643815666 10.6616936661 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;134209803;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134209804-134209851%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A134209804-134209851&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.615833629161 0.639598847933 1.04176692172 133894556 133894603 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;133894555;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134209804-134209851%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A133894556-133894603&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSEVKLPLISPPSQEQAEPR Same 580523 chr7:134209804-134209851+ 1963 1963 8 0 334 134208697 134210967 457 457;654;903;1140;1971;3155;4173;9542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:134208697-134210967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5625 0.0 21.14160625 0.9686 -0.19004375 21.33165 0.91457062132 0.983100316631 1252 146 146;1038;1039;1252;1266;1962;1997;10575 22.59891875 0.3746 -0.08021875 22.6791375 0.666407294954 1.0272856225 2944 15 15;2334;2668;2929;2944;3198;3972;9142 0.0 0.0 ENST00000285928.2 CDSintron coding exon(s) LRGUK alternative large final exon 1972 485937 chr11:111457847-111457927+ NoOverlap chr11 111457847 111457927 + 5.18768156458 27 0.765417404892 -1.94219267368 7.12987423826 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111457846;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111457847-111457927%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111457847-111457927&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.502002686382 0.639594766763 1.03956588202 111328572 111328652 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111328571;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111457847-111457927%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111328572-111328652&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPLCHTCLHPCWFPLPPCPLGFFLPAQLLVLGGLRDASGNLLLPGDSFVEPLSR Same 487895 chr11:111457847-111457927+ 1960 1960 12 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.289285714286 10.6230555556 0.9696 -0.648525925926 11.2715814815 0.929602472854 1.05884879846 1190 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 18.0459407407 0.6936 -1.04394814815 19.0898888889 0.982626426263 1.02913659169 1384 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000527555.1 NC pseudogene unitary pseudogene ENSG00000255093 1973 569625 chr5:157690112-157690366- NoOverlap chr5 157690112 157690366 - 3.70103413673 85 0.452089094736 -1.39772353199 5.09875766872 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;157690111;255;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A157690112-157690366-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A157690112-157690366&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.338252529324 0.63940543845 1.01049124318 157117120 157117374 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;157117119;255;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A157690112-157690366-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A157117120-157117374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LEGLGPALDYFRGNEKGKLEAEEVMRDAMQGGEGKSSAAIREGVIKTEEPERLLEDCRLGAEPASNGPARGSAEVILAPTSGAFGPHQQDLRIPLDSPHCFPWGPDPVSGSSAFR Same 570643 chr5:157690112-157690366- 1695 1695 278 0 835 157689958 157690896 1295 1295;1973;10238;34106 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:157689958-157690896&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.658823529412 0.885416666667 6.05074 0.8977 -4.60642117647 10.6571611765 0.928955469769 1.0725704446 1196 938 938;1196;2643;2918 6.96064352941 0.4885 -8.44152823529 15.4021717647 0.791178519953 1.04206729358 2510 405 405;2510;4099;5825 0.967383647656 chr5:157651112-157652078- 0.893254823024 chr5:157651112-157652078- ENST00000522076.1 NC pseudogene SRY-box 30 (SOX30) pseuodgene (ENSG00000253798) 1974 524599 chr18:54415417-54415458+ NoOverlap chr18 54415417 54415458 + 8.03192855631 14 0.764705882353 -8.74501429711 16.7769428534 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;54415416;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54415417-54415458%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A54415417-54415458&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.367845878017 0.639371949279 0.958305140005 51941787 51941828 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;51941786;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54415417-54415458%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A51941787-51941828&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AIDPEFQFLNHLPKSK Same 526035 chr18:54415417-54415458+ 1717 1717 257 0 663 54415278 54424623 1020 1020;1399;1951;1974;2187;2640;3987;7059;26481;56311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:54415278-54424623&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.285714285714 0.0 7.03128571429 0.8551 -12.7808857143 19.8121714286 0.475587266519 0.963314270734 3308 1312 1312;1532;1793;1867;1963;3255;3308;3468;3714;4481 13.4704357143 0.5777 -16.5211571429 29.9915928571 0.770929182155 1.04369792423 2578 85 85;217;311;1380;1426;2121;2398;2457;2578;2838 0.0 0.0 pseudogene unitary pseudogene ENSG00000283613 1975 561766 chr4:62454254-62454337- NoOverlap chr4 62454254 62454337 - 5.00178221294 28 0.87739702885 -1.58069281706 6.58247503 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;62454253;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A62454254-62454337-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A62454254-62454337&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.567675968305 0.639259902799 1.02200773098 63319972 63320055 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;63319971;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A62454254-62454337-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A63319972-63320055&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLSITLSVFRIIIQVAFPNFVGYIRSTPAPWVIFLPNGFGICSLLSFS Same 562758 chr4:62454254-62454337- 1954 1954 21 0 1312 62454254 62454337 Best 1975 1975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:62454254-62454337&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.392857142857 0.347107438017 5.52741071429 0.9861 -4.97533571429 10.5027464286 0.735728874948 1.07172819742 1950 Best 1950 1950 7.99553928571 0.3801 -5.46888928571 13.4644285714 0.567238655036 0.95322993055 3276 Best 3276 3276 0.0 0.0 not annotated potentially spurious 1980 549666 chr22:25375849-25376007- NoOverlap chr22 25375849 25376007 - 6.81522082017 53 0.398837723181 2.48101884011 4.33420198007 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;25375848;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25375849-25376007-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A25375849-25376007&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.516404931674 0.639018151938 0.957294689271 25771816 25771974 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;25771815;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25375849-25376007-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A25771816-25771974&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QKVVKGSLTHPFTLTLSGDTLHWMDWLTCSIHACNRNTAGKRNEILSALYSAWISR Same 551006 chr22:25375849-25376007- 2217 2217 -237 0 503 25374157 25381577 747 747;1980;4988;24697 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:25374157-25381577&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.603773584906 0.414242292662 19.3474754717 0.7426 8.71970754717 10.6277679245 1.10169379273 1.03731807004 15 Best 15 15;22;147;4401 59.5192169811 0.9186 16.7490377358 42.7701792453 0.997071795157 0.97754012365 1152 656 656;1152;1264;1743 1.00312789601 chr11:68363747-68363943+ 0.965300567938 chr11:68363747-68363943+ ENST00000402859.6 UTR5 pseudogene LRP5L converted to pseudogene (ENSG00000100068) after 3 exons added. This is still a protein-locus in GENCODEv28; it will be updated as a pseudogene in v29 1981 485936 chr11:111457329-111457391+ NoOverlap chr11 111457329 111457391 + 5.81755229121 21 0.839993896391 -2.77376677309 8.5913190643 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111457328;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111457329-111457391%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111457329-111457391&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.482955813559 0.638973083325 1.05437028363 111328054 111328116 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111328053;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111457329-111457391%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111328054-111328116&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVAHSWEDILQSSHQDLGPSGDGGPMEDPVTGGISPILGVGLDENTGLPAALSIVLPRPPPCLAWPPSPLPLSPLHPPCSDLSHK Same 487894 chr11:111457329-111457391+ 1933 1933 48 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.342391304348 9.92072857143 0.9671 -0.818204761905 10.7389333333 0.775822897843 1.03988820783 1773 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 26.5194714286 0.8227 1.97876666667 24.5407047619 1.02515641012 1.04756072339 698 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000527555.1 NCintron pseudogene unitary pseudogene ENSG00000255093 1983 478487 chr10:100882945-100882989+ NoOverlap chr10 100882945 100882989 + 6.01959340175 15 0.912403041632 -5.42072656155 11.4403199633 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100882944;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100882945-100882989%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100882945-100882989&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.261407036443 0.638446290714 1.02953472959 102642702 102642746 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102642701;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100882945-100882989%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102642702-102642746&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETDMSQAAHRELGGLYHAAAICTTR Same 480382 chr10:100882945-100882989+ 1970 1970 13 0 1318 100864660 100882989 Best 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.661764705882 0.927413333333 0.9979 -10.2614466667 11.18886 0.246804191615 1.04039228908 7071 Best 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 -1.19344666667 0.3798 -12.5075333333 11.3140866667 0.105411016124 0.815753677645 11027 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 1985 547900 chr22:16844869-16845012+ NoOverlap chr22 16844869 16845012 + 4.25319580237 48 0.589934767681 -1.45242084314 5.70561664551 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;16844868;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A16844869-16845012%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A16844869-16845012&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.369900230447 0.638332924712 1.03485858141 17325759 17325902 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;17325758;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A16844869-16845012%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A17325759-17325902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FAHQFLDPGTYMFQDNGQPESLAVVLVKEEGVACSPGLCPVQPSSPYQLGR Same 549314 chr22:16844869-16845012+ 2133 2133 -148 0 702 16844398 16846040 1086 1086;1985;4677;27537 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:16844398-16846040&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.604166666667 0.0761904761905 3.4488875 0.1836 -0.440035416667 3.88892291667 0.113997776535 0.816824256424 14497 Best 14497 14497;19551;22883;31233 18.8026604167 0.4738 2.06629791667 16.7363625 1.09408584221 1.01927254005 67 45 45;67;2554;4162 0.0 0.0 pseudogene uncharacterised pseudogene (ENSG00000283535) 1986 513368 chr16:14186604-14186633- NoOverlap chr16 14186604 14186633 - 5.95533994734 10 0.933971160449 -7.95469987988 13.9100398272 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;14186603;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A14186604-14186633-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A14186604-14186633&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0277241079081 0.63814925436 0.983160767653 14280461 14280490 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;14280460;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A14186604-14186633-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A14280461-14280490&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHPFSQPAPFPLPFQLPPR Same 515015 chr16:14186604-14186633- 1961 1961 25 0 1320 14186604 14186633 Best 1986 1986 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:14186604-14186633&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.633333333333 0.0 1.31793 0.957 -8.93013 10.24806 0.0718432397286 0.977421835813 19413 Best 19413 19413 -9.91566 0.5951 -21.1487 11.23304 -0.0244169139165 0.725769227482 51987 Best 51987 51987 0.0 0.0 ENST00000318282.9,ENST00000575768.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 1987 595712 chrX:133538257-133538331+ NoOverlap chrX 133538257 133538331 + 3.16107602686 25 0.769871366445 -6.49303597927 9.65411200613 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;133538256;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A133538257-133538331%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A133538257-133538331&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0825540721774 0.638098626248 1.05136751898 132672285 132672359 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;132672284;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A133538257-133538331%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A132672285-132672359&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQLSVGKDSTGLGHDRVSPKWRAHMAR Same 596354 chrX:133538257-133538331+ 1947 1947 40 0 1321 133538257 133538331 Best 1987 1987 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:133538257-133538331&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52 0.407608695652 -0.163404 0.9483 -14.10008 13.936676 0.490871491773 1.0863198556 3203 Best 3203 3203 -2.121864 0.3595 -17.996688 15.874824 0.322569375223 1.01793693726 4423 Best 4423 4423 0.0 0.0 ENST00000370818.7 AntiCDSintron not annotated potentially spurious 1990 581090 chr7:41705287-41705352- NoOverlap chr7 41705287 41705352 - 7.43714097142 22 0.882583907281 1.62997281551 5.80716815591 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;41705286;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A41705287-41705352-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A41705287-41705352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.720934647086 0.637897086717 0.930760342784 41744885 41744950 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;41744884;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A41705287-41705352-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A41744885-41744950&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGLALAPGILRAGLEQRPRSGVIPGSCQQVLLK Same 582041 chr7:41705287-41705352- 1928 1928 62 0 1324 41705287 41705352 Best 1990 1990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:41705287-41705352&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.712121212121 0.84 2.12162272727 0.8928 -4.27850909091 6.40013181818 0.211053399641 0.87052024015 8342 Best 8342 8342 -4.80839090909 0.5009 -13.3948954545 8.58650454545 0.0965527592143 0.751903526837 11857 Best 11857 11857 0.0 0.0 ENST00000416150.1,ENST00000415848.6 NC,AntiNCintron not annotated potentially spurious 1991 485927 chr11:111452409-111452501+ NoOverlap chr11 111452409 111452501 + 7.37114522306 31 0.664991619844 3.14717740301 4.22396782005 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111452408;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111452409-111452501%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111452409-111452501&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.738670265677 0.637773443284 0.853832469784 111323134 111323226 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111323133;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111452409-111452501%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111323134-111323226&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLSIHYVRALPPGGQCCGEGPFASTTPRYLIQTGIAR Same 487885 chr11:111452409-111452501+ 2001 2001 -10 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.655913978495 0.303921568627 10.5814096774 0.9716 5.06676129032 5.5146483871 0.84191021638 0.855679712897 1501 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 32.3746612903 0.692 13.9557322581 18.4189290323 1.06707980867 0.999240566197 181 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000528953.1,ENST00000525890.1 NCintron,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 1993 485952 chr11:111469784-111469840+ NoOverlap chr11 111469784 111469840 + 4.03841598195 19 0.902001742741 -6.48635808104 10.524774063 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111469783;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111469784-111469840%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111469784-111469840&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.110319270903 0.637620045228 1.0382111844 111340509 111340565 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111340508;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111469784-111469840%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111340509-111340565&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPTDLSPLPSLPLTKGLEAYFREAFPITLRMAAVSR Same 487910 chr11:111469784-111469840+ 2041 2041 -48 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.526315789474 0.0 8.09142105263 0.9618 -7.09382105263 15.1852421053 0.732146903395 1.03420251871 1968 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 11.4786894737 0.4631 -8.43674210526 19.9154315789 0.680716131919 1.03824906167 2877 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000356018.6 AntiCDSintron pseudogene unitary pseudogene ENSG00000255093 1994 486987 chr11:5514712-5514744- NoOverlap chr11 5514712 5514744 - 5.52081832019 11 0.895368886854 -8.15348197926 13.6743002994 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;5514711;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A5514712-5514744-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A5514712-5514744&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0154475473802 0.637522990365 0.982702925703 5535942 5535974 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;5535941;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A5514712-5514744-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A5535942-5535974&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQSPDGDPSHPLQAPEICFSKQMDSLQAMGFGNHHANLQALIATEGDTNAAIR Same 488954 chr11:5514712-5514744- 1895 1895 99 0 13 5514607 5515011 13 13;1076;1994 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:5514607-5515011&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.393939393939 0.0 -3.28336363636 0.9392 -16.5917636364 13.3084 0.0613776773898 1.05252662857 21032 457 457;1296;21032 15.6999727273 0.5562 -11.6368636364 27.3368363636 0.692957343302 1.05534669339 2840 162 162;2018;2840 0.0 0.310907806482 chr1:156036978-156037130- ENST00000380184.1,ENST00000380259.6 UTR3,UTR5intron pseudo-exon UBQLNL 3' UTR signal; this is CDS in the parent of this retrogene 1997 530524 chr19:28722658-28722771- NoOverlap chr19 28722658 28722771 - 5.36148683099 38 0.429533033775 -2.56242900538 7.92391583637 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28722657;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28722658-28722771-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28722658-28722771&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.22680670174 0.637241533425 1.06100470055 29213565 29213678 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29213564;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28722658-28722771-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29213565-29213678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATDVDISALKAVVQLAEPYLCES*ASTFTLECVKELLELKEHQLPLK Same 531988 chr19:28722658-28722771- 2200 2200 -203 17 1328 28700946 28722771 Best 1997 1997;8891;9090;18927;37310;39699 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28700946-28722771&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.508771929825 0.279411764706 7.94273684211 0.7617 -4.91885 12.8615868421 0.921896272087 1.04692280653 1227 Best 1227 1227;2244;3295;3647;4332;8998 25.3714684211 0.6283 -3.68380263158 29.0552710526 1.06131539569 1.01830376108 214 Best 214 214;954;1173;1175;1695;2440 0.823613910559 chr16:46615946-46616154- 0.933134980602 chr16:46615946-46616154- ENST00000590072.1 NC pseudogene extension pseudogene of SHCBP1 extended (ENSG00000283269) 2004 592970 chr9:114666637-114666675- NoOverlap chr9 114666637 114666675 - 7.8611846337 13 0.881774272115 -5.29882286145 13.1600074951 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;114666636;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114666637-114666675-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A114666637-114666675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.347270501269 0.636225067848 1.00232738617 117428917 117428955 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;117428916;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114666637-114666675-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A117428917-117428955&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YCQEHWPFQPCLTGRP*AF Same 593923 chr9:114666637-114666675- 1912 1912 92 2 1334 114657748 114666675 Best 2004 2004;38665 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:114657748-114666675&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.615384615385 0.0 9.13673076923 0.9721 -2.98293846154 12.1196692308 0.542472601711 1.03112223514 2856 1601 1601;2856 4.66876153846 0.3471 -7.63121538462 12.2999769231 0.159663863894 0.831694075814 7585 4800 4800;7585 0.0 0.0 ENST00000436752.1 NC protein-coding gene protein coding gene ENSG00000230054 2008 483264 chr11:1107077-1107271+ NoOverlap chr11 1107077 1107271 + 5.00885847096 65 0.430950460999 0.195209236328 4.81364923463 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1107076;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1107077-1107271%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1107077-1107271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.429280227798 0.635627668945 1.00335764929 1100985 1101179 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1100984;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1107077-1107271%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1100985-1101179&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCGEVGPAWCHLSSLLTLLSLQFGEHFEFDCKNCVCLEGGSGIICQPKRCSQKPVTHCVEDGTYLATEVNPADTCCNITVCSKAIPWGPCHLSGVHTSL Same 485194 chr11:1107077-1107271+ 2090 2090 -82 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.594871794872 0.523099850969 11.7756523077 0.8924 -3.65280769231 15.42846 1.00073370384 0.952636065957 730 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 21.8750492308 0.8295 -9.34825384615 31.2233030769 1.00086954406 0.972374248483 1097 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.0 ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 2010 470661 chr1:21951161-21951205- NoOverlap chr1 21951161 21951205 - 10.3774400967 15 0.868406195163 -1.24788660804 11.6253267047 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;21951160;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A21951161-21951205-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A21951161-21951205&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.591933240222 0.63539552558 1.03249584767 22277654 22277698 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;22277653;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A21951161-21951205-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A22277654-22277698&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPPAPLLQLIKGINYLDQSTNAYNSCHK Same 472543 chr1:21951161-21951205- 1943 1943 67 0 224 21950738 21951365 280 280;598;1175;2010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:21950738-21951365&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.488888888889 0.0 15.56724 0.9819 0.2942 15.27304 0.858285559324 1.02943662756 1435 293 293;962;1314;1435 17.2857466667 0.3501 -1.45852666667 18.7442733333 0.521586962698 0.979783284385 3452 1720 1720;2814;3146;3452 0.0 0.0 pseudogene unitary pseudogene ENSG00000283234 2011 539159 chr2:71578963-71579031- NoOverlap chr2 71578963 71579031 - 6.76993918678 23 0.92456138605 0.603191352409 6.16674783437 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;71578962;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A71578963-71579031-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A71578963-71579031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.683567015712 0.635226219847 0.967726905436 71806093 71806161 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;71806092;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A71578963-71579031-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A71806093-71806161&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YNSGFVLCFPAPWERQEDYETRCLWKCQDISWKK Same 540537 chr2:71578963-71579031- 2019 2019 -8 0 1338 71578835 71579031 Best 2011 2011;57752;68761 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:71578835-71579031&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.478260869565 0.530769230769 -3.42259565217 0.9602 -4.79473043478 1.37213478261 -0.0613328194894 0.430037555759 72581 21858 21858;50833;72581 -7.68923043478 0.4284 -7.88155217391 0.19232173913 -0.0424826905473 0.399229720653 67008 39057 39057;55413;67008 0.0 0.0 ENST00000258104.7,ENST00000475076.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 2013 489523 chr11:114076681-114076707- NoOverlap chr11 114076681 114076707 - 8.14212212298 9 0.902752558005 -8.33958880107 16.481710924 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;114076680;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114076681-114076707-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A114076681-114076707&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.120030755911 0.635076497191 0.958656941986 113947403 113947429 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;113947402;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114076681-114076707-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A113947403-113947429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MFLESLDLAAASHCF Same 491508 chr11:114076681-114076707- 1908 1908 105 0 1340 114076681 114083125 Best 2013 2013;18019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:114076681-114083125&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.518518518519 1.125 -3.23806666667 0.9514 -22.2401222222 19.0020555556 0.0917536156705 1.01938464019 16817 6905 6905;16817 -9.25264444444 0.4208 -29.3664333333 20.1137888889 0.0431332272245 0.973483410776 20234 Best 20234 20234;32750 0.0 0.0 ENST00000335953.8,ENST00000539918.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 2014 520380 chr17:8226609-8226686- NoOverlap chr17 8226609 8226686 - 8.44397675647 26 0.767630919473 5.36153837695 3.08243837953 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8226608;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8226609-8226686-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8226609-8226686&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.851174905168 0.634998562583 0.676009870298 8129927 8130004 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8129926;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8226609-8226686-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8129927-8130004&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SRGRVVKAMD*KSIGVSPRRFESCRLR Same 521790 chr17:8226609-8226686- 1974 1974 40 10 1341 8221594 8227025 Best 2014 2014;17863;26203;31694;31965;37522;40474;40990;66443;67460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8221594-8227025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.589743589744 1.18857142857 4.7881 1.0 -2.07137692308 6.85947692308 0.533376306381 0.930044373998 2913 Best 2913 2913;4601;11583;16441;20948;21333;25351;28719;65647;67294 4.7881 0.3126 -2.07137692308 6.85947692308 0.209842027918 0.717342762958 5986 Best 5986 5986;8484;15863;24228;24536;28672;31456;32683;52097;52689 0.0 0.0 ENST00000315684.12 UTR3 not annotated 6 tRNAs 2015 481628 chr10:100108448-100108504- NoOverlap chr10 100108448 100108504 - 4.35173685613 19 0.766386784081 -6.7310579325 11.0827947886 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100108447;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100108448-100108504-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100108448-100108504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.145556346208 0.634949570544 1.02443359061 101868205 101868261 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101868204;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100108448-100108504-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101868205-101868261&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTVLPLLSLVLFSYKQFPK Same 483544 chr10:100108448-100108504- 1931 1931 84 0 90 100105748 100122651 105 105;606;781;1442;2015;3184;14859;17791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100105748-100122651&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.40350877193 0.0 1.80483684211 0.7883 -6.16456315789 7.9694 0.16808249886 0.944263997516 10411 2120 2120;2485;2770;2888;8530;10411;15939;19257 5.50014210526 0.3699 -12.0690894737 17.5692315789 0.430935854191 1.01867103885 3819 209 209;267;1101;3020;3409;3819;4117;17036 0.0 0.197154983149 chr10:133537751-133537892+ pseudogene unitary pseudogene ENSG00000283232 2019 470918 chr1:26354636-26354683- NoOverlap chr1 26354636 26354683 - 14.2667749375 16 0.903856717784 8.89871250093 5.36806243658 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;26354635;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26354636-26354683-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A26354636-26354683&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.708195309226 0.634590719868 0.702936476856 26681127 26681174 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;26681126;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26354636-26354683-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A26681127-26681174&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QQGISGGPAQSLGRLQRPAVGSAFDLASHASLGPESLALEVASGESAR Same 472794 chr1:26354636-26354683- 1955 1955 64 0 1345 26354279 26360113 Best 2019 2019;2765;11776;20942 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:26354279-26360113&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.75 0.594427244582 24.0431875 0.9792 17.06773125 6.97545625 0.845843568833 0.681757672019 1489 Best 1489 1489;2433;6796;54936 25.3454125 0.4291 15.5990875 9.746325 0.595923211946 0.689970495161 3180 Best 3180 3180;5046;25356;44290 0.0 0.0 coding exon(s) CRYBG2 3 alternative first coding exons 2025 494067 chr12:2775566-2775661- NoOverlap chr12 2775566 2775661 - 4.2947407132 32 0.57719586862 -3.93327498436 8.22801569756 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2775565;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2775566-2775661-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2775566-2775661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.21456069161 0.633995442443 1.06485835463 2884732 2884827 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2884731;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2775566-2775661-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2884732-2884827&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLGRPVLTLSLCTQCICQLAETLALSGCGGVNLESQLGNITGVLFQLVGAAGR Same 496061 chr12:2775566-2775661- 2165 2165 -140 0 1350 2767965 2775661 Best 2025 2025;14121;16598 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2767965-2775661&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.572916666667 0.132231404959 0.698396875 0.488 -5.919709375 6.61810625 0.0777013214067 0.941964961765 18587 9143 9143;18587;21423 0.698396875 0.1525 -5.919709375 6.61810625 0.0526213872857 0.7381350961 18208 4488 4488;12570;18208 0.0 0.0 pseudogene unitary pseudogene ENSG00000255669 2027 508107 chr15:24212291-24212368- NoOverlap chr15 24212291 24212368 - 5.95165000971 26 0.460000234754 -7.02864994968 12.9802999594 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;24212290;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A24212291-24212368-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A24212291-24212368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.183699714617 0.633889227395 0.945962664338 24457438 24457515 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;24457437;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A24212291-24212368-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A24457438-24457515&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHTAGRPQASGEAEKAT*SLKRTLGKLCWETEEN Same 509826 chr15:24212291-24212368- 1990 1990 37 13 1352 24212291 24212452 Best 2027 2027;22616 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:24212291-24212452&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.461538461538 0.0 2.85902307692 0.1652 -3.74330384615 6.60232692308 0.0646388277869 0.914368024332 20493 Best 20493 20493;30244 4.00521923077 0.0841 -5.01128846154 9.01650769231 0.0940365846789 0.803798938481 12108 Best 12108 12108;35617 0.0 0.0 ENST00000568541.1 AntiNCintron not annotated putative regulatory region 2030 497012 chr12:114896598-114896645- NoOverlap chr12 114896598 114896645 - 4.85336250812 16 0.803601129168 -7.14596249536 11.9993250035 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;114896597;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A114896598-114896645-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A114896598-114896645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.130017282226 0.633575186784 1.00794243715 115334403 115334450 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;115334402;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A114896598-114896645-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A115334403-115334450&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLGIKPTQPTLCSLASLWVPQIARVLHMEPH*HHWEFHR Same 499020 chr12:114896598-114896645- 1897 1897 133 7 1355 114895933 114896645 Best 2030 2030;24060;26560 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:114895933-114896645&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.48 1.94993125 0.9988 -10.91235625 12.8622875 0.36793172038 1.0654884482 4432 Best 4432 4432;4802;16359 0.75265625 0.3554 -11.9695125 12.72216875 0.166309979897 0.874323889447 7292 Best 7292 7292;15708;37215 0.0 0.0 not annotated putative regulatory region 2031 529665 chr19:3762915-3762956- NoOverlap chr19 3762915 3762956 - 7.04609281676 14 0.738659821905 -9.57217897688 16.6182717936 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;3762914;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3762915-3762956-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A3762915-3762956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.266139995741 0.633338391026 0.95214752821 3762913 3762954 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;3762912;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3762915-3762956-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A3762913-3762954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLHVTTSSSQAAPPQAGACALGPIATVSPSQTPELQAALGPSNCACAYSLASASLRLR Same 531128 chr19:3762915-3762956- 1682 1682 349 0 1356 3762915 3762956 Best 2031 2031 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:3762915-3762956&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.690476190476 0.848484848485 2.01650714286 0.7819 -15.7491142857 17.7656214286 0.32043557049 1.00834945928 5193 Best 5193 5193 1.53589285714 0.3593 -13.8429714286 15.3788642857 0.189993600961 0.941475740588 6522 Best 6522 6522 0.0 0.227554978684 chr18:59269004-59269501- ENST00000330133.4 AntiCDSintron not annotated putative regulatory region 2032 475096 chr1:182400486-182400521- NoOverlap chr1 182400486 182400521 - 8.96779982249 12 0.919401846342 -4.99214166403 13.9599414865 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;182400485;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A182400486-182400521-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A182400486-182400521&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.364141835453 0.633123177129 0.993566307301 182369621 182369656 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;182369620;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A182400486-182400521-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A182369621-182369656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGLFLFSYGLYQATVVSKGMILK Same 476977 chr1:182400486-182400521- 1923 1923 109 0 584 182390538 182400521 892 892;1504;2032;4516 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:182390538-182400521&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.0 10.4135583333 0.8905 -11.3817 21.7952583333 0.493108590079 0.957570078361 3190 515 515;2315;3190;6985 12.2437916667 0.441 -16.0430166667 28.2868083333 0.524432644718 1.0570944641 3443 2130 2130;3443;4050;6413 0.0 0.0 ENST00000367565.1 Extension5p coding exon(s) GLUL first exon 2035 585592 chr8:143789436-143789489+ NoOverlap chr8 143789436 143789489 + 10.4626388301 18 0.713183794919 2.59562219514 7.86701663501 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143789435;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143789436-143789489%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143789436-143789489&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.653862663231 0.632957077162 0.997523124362 144871606 144871659 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144871605;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143789436-143789489%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144871606-144871659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPTQLQQAYCELSRRISEHDQCEWR Same 586529 chr8:143789436-143789489+ 2099 2099 -64 0 75 143788915 143790593 85 85;88;331;613;845;2035;14755 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143788915-143790593&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.574074074074 0.45 16.2136055556 0.8272 2.51755555556 13.69605 0.704910583262 1.03758915464 2067 92 92;111;801;1056;1111;2067;2390 20.1516611111 0.5284 -3.49846111111 23.6501222222 0.888523240732 1.04741599849 2161 116 116;127;431;967;1717;2161;3235 0.0 0.0712954148159 chr3:9750287-9750423+ ENST00000527139.5 NC protein-coding gene protein-coding gene ENSG00000203499 2038 562937 chr4:151175562-151175615- NoOverlap chr4 151175562 151175615 - 9.32931672699 18 0.963444469876 2.19466670354 7.13465002345 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;151175561;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151175562-151175615-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A151175562-151175615&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.674838408014 0.632548761566 0.974151386794 152096714 152096767 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;152096713;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151175562-151175615-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A152096714-152096767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSMYVVLNLCIFYFFPYTLLTLWLVFICFGFVLVSSALQAPLKPLQPFSAVSSGNLPTNVAPLIVFDISEEPNCPENPSATR None NA NA 0 161 151175562 151187459 192 192;396;2038;2250;4391;9851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:151175562-151187459&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.37037037037 1.09090909091 11.0463222222 0.9979 2.69391666667 8.35240555556 0.735700924875 0.932587183549 1951 84 84;931;1769;1951;1972;2039 3.30162222222 0.6603 -8.46878888889 11.7704111111 0.320871963758 0.854756632065 4439 878 878;883;2268;2607;3428;4439 0.0 0.0 ENST00000304527.8,ENST00000604030.5 UTR5,NC coding exon(s) SH3D19 5' coding exons 2039 526661 chr19:1533756-1533821+ NoOverlap chr19 1533756 1533821 + 4.93737728216 22 0.607549054287 -6.59093644402 11.5283137262 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;1533755;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1533756-1533821%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A1533756-1533821&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.180679968951 0.632421808404 1.00353248097 1533755 1533820 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;1533754;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1533756-1533821%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A1533755-1533820&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LEAFALRDVPGLLGAKLAVLQLFAGCLR Same 528106 chr19:1533756-1533821+ 2003 2003 36 0 61 1524154 1533821 68 68;129;412;744;947;2039;3059;9713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:1524154-1533821&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.712121212121 0.478260869565 17.1724954545 0.8445 -6.01822727273 23.1907227273 0.847315272911 0.966202061491 1482 205 205;265;523;631;1057;1237;1482;2663 17.3692681818 0.4994 -10.1872045455 27.5564727273 0.934306307845 1.04984739612 1921 449 449;648;739;1129;1230;1261;1334;1921 0.0 0.322259879388 chr1:44804650-44804779+ ENST00000334770.8 CDSintron pseudo-exon PLK5 pseudo exons 2040 466182 chr1:90537859-90537888+ NoOverlap chr1 90537859 90537888 + 6.54325993061 10 0.973022049287 -7.15701024532 13.7002701759 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90537858;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90537859-90537888%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90537859-90537888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0279068499036 0.632313242343 0.99158836922 91003416 91003445 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91003415;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90537859-90537888%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91003416-91003445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DKVPNKEISNIGSS Same 468042 chr1:90537859-90537888+ 2100 2100 -60 0 1360 90535213 90537888 Best 2040 2040;13302 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90535213-90537888&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4 0.0 1.36276 0.9582 -9.50459 10.86735 0.0852246295173 0.998709187841 17599 Best 17599 17599;34464 -8.22526 0.8768 -20.39495 12.16969 -0.0246521212218 0.773090666278 52199 25878 25878;52199 0.0 0.0 not annotated putative regulatory region 2041 553967 chr3:167915073-167915105+ NoOverlap chr3 167915073 167915105 + 10.1668089953 11 0.919096665904 -6.25620001013 16.4230090055 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;167915072;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A167915073-167915105%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A167915073-167915105&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.362604798151 0.631827960728 0.968180259364 167632861 167632893 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;167632860;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A167915073-167915105%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A167632861-167632893&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QKPHFFLLFVFPQNLNISFQGLGDPYQVENFNR Same 554916 chr3:167915073-167915105+ 1927 1927 114 0 229 167912863 167917494 287 287;728;2041;2778 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:167912863-167917494&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.454545454545 0.0 7.43084545455 0.9637 -9.05892727273 16.4897727273 0.445349364383 1.02065386625 3547 421 421;1323;1943;3547 26.8084 0.7825 -7.99858181818 34.8069818182 1.00597162224 1.03681686164 1016 411 411;622;1016;1276 0.0 0.0 ENST00000459923.5,ENST00000469060.5 NC,NCintron pseudogene unitary pseuodgene ENSG00000244227 2047 543799 chr20:49328530-49328637+ NoOverlap chr20 49328530 49328637 + 6.46676108407 36 0.540857726575 1.05278057108 5.41398051298 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;49328529;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49328530-49328637%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A49328530-49328637&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.504619679059 0.630954351944 0.983081114473 47945067 47945174 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;47945066;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49328530-49328637%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A47945067-47945174&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNPTEVSLADTTFSSSSLLHCGTVEWLQSLCETCQVSYHVHRRRVLQEPRNGGVPFPLLEERAGCVEYWSHQGVECQQSLHEWGWAPGVALSGNSQAGLQGPP Same 545190 chr20:49328530-49328637+ 2176 2176 -129 0 1366 49318436 49340428 Best 2047 2047;3687;18732;36370;50172;50543;57104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:49318436-49340428&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.638888888889 0.458404074703 1.86224444444 0.7318 -8.88808333333 10.7503277778 0.48483097821 1.10318262959 3238 Best 3238 3238;3385;16849;16867;36672;53077;54154 24.4002083333 0.6001 -0.884611111111 25.2848194444 1.09393071064 1.04711662017 70 Best 70 70;869;3100;3618;7110;19303;47365 0.0 0.223471130665 chr8:73081019-73081213- pseudogene somatomedin B and thrombospondin type 1 domain containing (SBSPON) transcribed_unprocessed_pseudogene (ENSG00000283529) 2049 485678 chr11:85663979-85664038+ NoOverlap chr11 85663979 85664038 + 6.95496487617 20 0.905699244678 -0.774710083008 7.72967495918 ENST00000527447.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;85663978;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663979-85664038%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A85663979-85664038&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.599313853275 0.630618848926 1.03027742587 85375023 85375082 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;85375022;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663979-85664038%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A85375023-85375082&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QSVVVVTGGRVSEERGGQPQSHAAQPAQQASQSSLVG Same 487637 chr11:85663979-85664038+ 2017 2017 32 0 640 85662411 85665175 984 984;2049;2813;3027;18118;20011;21291;24329;58708;71875 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:85662411-85665175&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.902255639098 -0.5862 0.9506 -8.57621 7.99001 0.151160736548 0.944748241704 11498 2447 2447;10858;11498;16615;27666;29218;29965;35821;36919;48364 -23.78748 0.9016 -26.351435 2.563955 -0.0169186874427 0.318056400464 45741 5807 5807;12876;35731;45741;53410;58313;62812;66127;69825;72999 0.0 0.124803550844 chr17:41160191-41160691- ENST00000527447.1,ENST00000260058.9,ENST00000534224.1,ENST00000531515.5 AntiCDS,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 2050 528616 chr19:43575565-43575612+ NoOverlap chr19 43575565 43575612 + 7.5923435688 16 0.922450789654 -2.62296865787 10.2153122267 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;43575564;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A43575565-43575612%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A43575565-43575612&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.481594523431 0.630536971128 1.04927661058 44079717 44079764 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;44079716;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A43575565-43575612%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A44079717-44079764&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VRKRARLGPFKPRRAGAGVDTAQAQSR Same 530071 chr19:43575565-43575612+ 2000 2000 50 0 1368 43575565 43575612 Best 2050 2050 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:43575565-43575612&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.791666666667 1.34453781513 5.7429375 0.9897 -4.76114375 10.50408125 0.475750578503 1.02293433714 3305 Best 3305 3305 4.3050125 0.3764 -6.29738125 10.60239375 0.19708835495 0.79597234659 6330 Best 6330 6330 0.0 0.0 ENST00000600242.1,ENST00000262887.9,ENST00000594374.1 NC,AntiUTR5,AntiCDSintron not annotated potentially spurious 2052 522779 chr17:64146333-64146431- NoOverlap chr17 64146333 64146431 - 4.27420608124 33 0.936608474306 -2.11499692996 6.3892030112 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;64146332;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64146333-64146431-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A64146333-64146431&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.515057140074 0.630371828787 1.03216373494 62223693 62223791 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;62223692;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64146333-64146431-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A62223693-62223791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EARRPQLCASTCSSAAD*PPAPRGSSAGAQRQRVANDTHR Same 524208 chr17:64146333-64146431- 2159 2159 -107 16 1370 64146333 64146431 Best 2052 2052 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:64146333-64146431&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.676767676768 0.970588235294 -0.125309090909 0.9647 -5.96701818182 5.84170909091 0.226838145602 0.887594950342 7734 Best 7734 7734 -7.0598969697 0.4932 -12.5815030303 5.52160606061 0.0432146433434 0.672253110849 20204 Best 20204 20204 0.0 0.0 ENST00000582965.1 AntiNC not annotated putative regulatory region 2053 480597 chr10:48156200-48156259- NoOverlap chr10 48156200 48156259 - 7.47508006096 20 0.859296559091 0.277580016851 7.19750004411 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;48156199;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A48156200-48156259-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A48156200-48156259&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.645537651458 0.630333377852 1.00595402441 49364243 49364302 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;49364242;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A48156200-48156259-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A49364243-49364302&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HGLLYSSPELDGEDGEGDMYHPCGAPSPTSEDEEYLTINSTCQGQLPCEECLEADSGTIPLPQFCSWGTVPESLPPEESPESGSEWEDLEEPVALEYGALR Same 482507 chr10:48156200-48156259- 1968 1968 85 0 1371 48156119 48156259 Best 2053 2053;7585 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:48156119-48156259&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.516666666667 0.0 11.45004 0.9147 1.267565 10.182475 0.722248864378 1.0171886618 2000 Best 2000 2000;2703 10.3046 0.5294 -1.849555 12.154155 0.538560623164 0.86389420724 3394 2958 2958;3394 0.0 0.0 coding exon(s) FRMPD2 alternative final exon 2057 527768 chr19:29840491-29840517+ NoOverlap chr19 29840491 29840517 + 7.41147777769 9 0.900414536762 -8.28353333473 15.6950111124 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;29840490;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A29840491-29840517%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A29840491-29840517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0629157236427 0.629572776594 0.962763544298 30331398 30331424 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;30331397;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A29840491-29840517%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A30331398-30331424&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSV*QPAK*SCI Same 529215 chr19:29840491-29840517+ 1940 1940 117 4 1374 29840491 29840517 Best 2057 2057 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:29840491-29840517&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.551020408163 3.87828888889 0.9613 -12.6442777778 16.5225666667 0.224294625257 1.02282474051 7827 Best 7827 7827 2.5185 0.3684 -12.4911666667 15.0096666667 0.0838936087552 0.888926431066 13279 Best 13279 13279 0.0 0.0 not annotated putative regulatory region 2058 504673 chr14:74188570-74188680- NoOverlap chr14 74188570 74188680 - 3.96922430316 37 0.907535276178 -2.0480243032 6.01724860636 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;74188569;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A74188570-74188680-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A74188570-74188680&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.509994765152 0.629523309297 1.02746005745 74655273 74655383 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;74655272;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A74188570-74188680-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A74655273-74655383&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QNNHSTQSQIFPVKGMKPPEQAEMKEMKMTRNYCYGDIITILYKMSVGGNGGGGR Same 506518 chr14:74188570-74188680- 2073 2073 -15 0 1375 74188570 74194217 Best 2058 2058;4708 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:74188570-74194217&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.387387387387 0.720779220779 -1.58647837838 0.9264 -4.31576756757 2.72928918919 0.0234805544598 0.626265388243 31210 11436 11436;31210 -10.2173621622 0.8478 -12.500472973 2.28311081081 -0.0255040355139 0.531162685981 52978 13345 13345;52978 0.0 0.0 ENST00000554938.1,ENST00000553404.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 2059 496466 chr12:95408086-95408124- NoOverlap chr12 95408086 95408124 - 4.85388467862 13 0.768136814738 -9.54780777601 14.4016924546 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;95408085;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95408086-95408124-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A95408086-95408124&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00508274528059 0.629365272182 0.954688741985 95801862 95801900 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;95801861;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95408086-95408124-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A95801862-95801900&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IEEAKQKKEGVNKQLIR Same 498468 chr12:95408086-95408124- 1752 1752 307 0 1078 95405372 95408124 1638 1638;2059;7365;33136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:95405372-95408124&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.384615384615 0.696428571429 0.474223076923 0.8882 -17.4101230769 17.8843461538 0.268428941121 1.01543133328 6398 2635 2635;6398;9658;12683 0.468023076923 0.5397 -19.3934846154 19.8615076923 0.306392665293 1.03674186701 4565 2962 2962;3484;3887;4565 0.0 0.0 ENST00000550470.1 NC pseudogene unitary pseudogene ENSG00000257943 2060 497654 chr12:130424742-130424786- NoOverlap chr12 130424742 130424786 - 17.5584534009 15 0.782070649271 4.22101322214 13.3374401788 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;130424741;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A130424742-130424786-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A130424742-130424786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.652684549583 0.629334975356 0.983675616 130909287 130909331 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;130909286;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A130424742-130424786-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A130909287-130909331&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KRLFSIPEVAEEDGECCGLLHK Same 499667 chr12:130424742-130424786- 2163 2163 -103 0 478 130414095 130424786 705 705;1088;2060;14312;67443 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:130414095-130424786&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.511111111111 1.125 23.3304133333 0.8816 6.50307333333 16.82734 0.740474575831 1.00201481839 1927 981 981;1927;2532;4152;47833 49.4382733333 0.9622 16.0271466667 33.4111266667 0.974848735771 1.01098746614 1513 1381 1381;1440;1513;3885;39756 0.0 0.115026235752 chr17:58308541-58309380- ENST00000261655.8 CDSintron coding exon(s) RIMBP2 3 cassette exons 2064 542161 chr2:227724617-227724757- NoOverlap chr2 227724617 227724757 - 5.80109792567 47 0.695581214521 2.38848726103 3.41261066465 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227724616;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227724617-227724757-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227724617-227724757&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.76086598759 0.629122870929 0.853812943816 228589333 228589473 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228589332;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227724617-227724757-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228589333-228589473&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLSTDTMGCCGCGGCGGGCGGCGGGCSGGCGGGCGGGCGSCTTCRCYRVGCCSSCCPCCR Same 543538 chr2:227724617-227724757- 2085 2085 -21 0 1076 227724476 227728420 1636 1636;2064;4852 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227724476-227728420&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.695035460993 0.352323838081 14.7255361702 0.8521 5.26274893617 9.46278723404 1.06267926754 1.04377622391 124 Best 124 124;1815;5645 17.2666234043 0.5296 6.37861276596 10.8880106383 0.953854277799 0.90271581837 1783 Best 1783 1783;3598;6389 0.0 0.0847670745799 chr1:152909798-152911555+ protein-coding gene protein coding gene ENSG00000284725 2071 561779 chr4:68049815-68049997- NoOverlap chr4 68049815 68049997 - 3.82584916916 61 0.326023511401 -5.15232134384 8.97817051301 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;68049814;183;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A68049815-68049997-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A68049815-68049997&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.1492948787 0.628502591952 1.03274741512 68915533 68915715 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;68915532;183;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A68049815-68049997-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A68915533-68915715&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PSLTSIILVILLSLGELPLLTGFLPK*AIIQEITKNNSLIIPTFIAIIALLNLYFYIHLIYSTSLMMFPTTNNIK Same 562771 chr4:68049815-68049997- 1953 1953 118 15 1383 68049815 68050392 Best 2071 2071;7458;36754 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:68049815-68050392&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.0 -1.53949508197 0.0917 -3.53181967213 1.99232459016 -0.00828544237688 0.583756144053 46087 27671 27671;35553;46087 26.4285786885 0.6963 -11.8250065574 38.2535852459 0.938978326773 0.916786886911 1891 227 227;1891;2294 0.0 0.872729014596 chrM:4470-5511+ ENST00000500538.6 AntiNCintron pseudogene mitochondrial pseudogene region (ENSG00000283156) 2076 529760 chr19:5567670-5567933- NoOverlap chr19 5567670 5567933 - 6.71853976409 88 0.311745458707 3.54557840983 3.17296135426 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;5567669;264;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A5567670-5567933-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A5567670-5567933&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.608634064584 0.627783138817 0.882295842185 5567681 5567944 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;5567680;264;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A5567670-5567933-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A5567681-5567944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGAMEGLRRGLSRWKRYHIKVHLADEALLLPLTVRPRDTLSDLRAQLVGQGVSSWKRAFYYNARRLDDHQTVRDARLQDGSVLLLVSDPR Same 531223 chr19:5567670-5567933- 2188 2188 -112 0 1387 5560211 5567933 Best 2076 2076;47553 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:5560211-5567933&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.731060606061 1.05372168285 8.94378181818 0.6539 2.49434772727 6.44943409091 0.935857322996 0.992665423752 1164 Best 1164 1164;37063 20.7354670455 0.4328 6.64496136364 14.0905056818 0.9640990348 0.966686727743 1646 Best 1646 1646;47538 0.0 0.0 ENST00000448587.5 NC protein-coding gene protein coding gene ENSG00000223573 2079 520752 chr17:28729026-28729058- NoOverlap chr17 28729026 28729058 - 7.29427248985 11 0.78576333257 -11.6307359934 18.9250084832 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;28729025;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A28729026-28729058-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A28729026-28729058&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.157123443712 0.627477305491 0.97441309222 27056044 27056076 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;27056043;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A28729026-28729058-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A27056044-27056076&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SNGPVRGVASVEAESPR Same 522166 chr17:28729026-28729058- 1658 1658 421 0 204 28716900 28729058 248 248;2079;2289;12048 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:28716900-28729058&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.564102564103 -4.16153636364 0.8886 -10.4022454545 6.24070909091 -0.0240119629936 0.747132100758 56808 513 513;2080;5830;56808 -5.54345454545 0.3094 -10.4822636364 4.93880909091 -0.0207038178414 0.519068348586 48672 2890 2890;6873;48672;65906 0.0 0.0 ENST00000268766.10,ENST00000579060.5,ENST00000543014.1 AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 2080 505823 chr14:105741900-105742202- NoOverlap chr14 105741900 105742202 - 3.64951087807 101 0.399317725318 -1.8075871354 5.45709801347 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105741899;303;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105741900-105742202-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105741900-105742202&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.300110754563 0.626704715942 1.01913647673 106208237 106208539 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106208236;303;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105741900-105742202-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106208237-106208539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DRPQPGADTSTSISSSAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISK None NA NA 0 546 105737771 105743011 829 829;1682;2080;6140;6600;28138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105737771-105743011&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.580858085809 0.59310974814 10.7876237624 0.7428 -4.00431188119 14.7919356436 0.984088755771 1.00278991778 876 5 5;31;57;114;876;1915 9.82530792079 0.4003 -10.7469683168 20.5722762376 0.834985082737 1.10561240487 2370 82 82;224;483;1691;2370;2712 0.0 0.0436808588122 chr5:176577399-176577554+ ENST00000390548.6 NC immunoglobulin segment overlaps an immunoglobulin region 2083 585815 chr8:10474912-10474953- NoOverlap chr8 10474912 10474953 - 13.5684787546 14 0.925200274662 -1.11810010725 14.6865788618 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;10474911;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10474912-10474953-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A10474912-10474953&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.611330836112 0.626206678391 1.00730819289 10332422 10332463 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;10332421;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10474912-10474953-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A10332422-10332463&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NMPGVYTELSNYLLWIER Same 586752 chr8:10474912-10474953- 1904 1904 179 0 1390 10474912 10483234 Best 2083 2083;5461;58915 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:10474912-10483234&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.47619047619 0.42 20.9123642857 0.9637 0.605435714286 20.3069285714 0.870105012082 0.988326044826 1396 Best 1396 1396;2872;3519 45.4256714286 0.6911 2.11049285714 43.3151785714 1.01269246835 1.0016300446 900 Best 900 900;1656;3663 0.0211849729471 chr8:10538476-10538793+ 0.333851026792 chr11:117903571-117903807- ENST00000524047.5 AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 2084 480273 chr10:23250629-23250664- NoOverlap chr10 23250629 23250664 - 8.32250008484 12 0.811902037079 -8.72155860687 17.0440586917 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;23250628;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23250629-23250664-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A23250629-23250664&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.305184216161 0.626123857007 0.959185592794 23539558 23539593 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;23539557;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23250629-23250664-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A23539558-23539593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HGLESQIEALKANLENEK Same 482183 chr10:23250629-23250664- 1842 1842 242 0 284 23239726 23250664 372 372;968;2084 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:23239726-23250664&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.305555555556 0.0 2.928925 1.0 -21.6869 24.615825 0.394064871663 0.938557880909 4085 276 276;1637;4085 1.78065833333 0.5767 -27.9681916667 29.74885 0.458220933179 1.05994982137 3694 534 534;2535;3694 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 2085 539875 chr2:110399464-110399571- NoOverlap chr2 110399464 110399571 - 7.9097749417 36 0.393024507685 1.87747779613 6.03229714558 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110399463;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110399464-110399571-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110399464-110399571&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.403967263086 0.626081539697 1.0152263919 111157041 111157148 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111157040;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110399464-110399571-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111157041-111157148&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FTCVVFTLCFWFLFSGLKTAEGSP*FENILEIAFELYVLVTTANSPDIMSAHP Same 541235 chr2:110399464-110399571- 2359 2359 -274 9 1194 110397399 110408025 1806 1806;2085;2438;3107;4591;8217;15827;15899 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110397399-110408025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.490740740741 0.769230769231 18.1584666667 0.7783 6.75485 11.4036166667 1.03026477055 1.05490001371 480 48 48;279;480;726;1001;1821;1905;2030 40.0331111111 0.7403 10.1408083333 29.8923027778 0.975444385487 1.04243920784 1506 350 350;364;877;881;1131;1304;1506;1758 0.0 0.0 ENST00000488671.1 NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000184115) 2089 505960 chr15:21614340-21614888+ NoOverlap chr15 21614340 21614888 + 3.35753171046 183 0.374966615678 -0.485412027778 3.84294373824 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;21614339;549;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21614340-21614888%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A21614340-21614888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.498488459397 0.625674808108 1.01077528357 22344882 22345430 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;22344881;549;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21614340-21614888%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A22344882-22345430&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHTPMYFFLSNLSFVDIACSSATAPKMIEDFVSEKKTISYWGCITQMFTFHFFGCAEIFVLTVMAFDRYAAICQPLRYTVIMSANAYTVLASLSWLGALGHSFVQTVLTFQLPFCNAQVIDHYFCDVHPVLKLACADTTLVNMLVVANSGLISLGCFLILLASYTVILFSLQKQSAES*HKVLSTCGSHLTIVTFFFVPCIFIYLHPLLSHWIK Different 507671 chr15:21614124-21614888+ 1027 1027 1062 26 509 21609137 21614980 756 756;2089;3812;4681;5034;9481;63060 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:21609137-21614980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.440801457195 0.151741293532 13.3780775956 0.7999 1.35577431694 12.0223032787 1.03760201647 1.06080626935 392 347 347;392;1003;1013;1063;1118;2359 34.3685278689 0.9136 -13.3958431694 47.7643710383 0.954434161556 0.956795512519 1773 949 949;977;1339;1358;1773;2103;2551 0.0 0.301247531478 chr11:55993681-55994625- ENST00000625989.2 NCintron pseudogene (shared cluster) two olfactory receptor pseudogenes in close proximity (ENSG00000285491 & ENSG00000285116) 2093 595949 chrX:153485990-153486067+ NoOverlap chrX 153485990 153486067 + 5.73269225084 26 0.580781848807 -3.03171143623 8.76440368707 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;153485989;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153485990-153486067%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A153485990-153486067&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.316452216017 0.624687387953 1.05782580473 152751448 152751525 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;152751447;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153485990-153486067%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A152751448-152751525&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASLAELLLDHNQVQAIPRGLLGLKGLQVLGLSHNR Same 596590 chrX:153485990-153486067+ 2221 2221 -128 0 1397 153481540 153486067 Best 2093 2093;2101;2242;2901;9240;10410;14641;25631 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:153481540-153486067&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.462222222222 8.55308846154 0.7102 -5.67382692308 14.2269153846 0.744780368968 1.03973074735 1899 Best 1899 1899;2169;2617;3156;4527;4610;7126;15622 25.2292653846 0.8737 -17.7969576923 43.0262230769 1.01315021703 0.890852513294 891 550 550;891;987;1399;1497;1593;2015;2812 0.0 0.215236474397 chr9:92500727-92501053- ENST00000428676.1,ENST00000370210.3 NC,AntiUTR5intron pseudogene unitary pseudogene ENSG00000224963 2097 588111 chr8:142574537-142574590- NoOverlap chr8 142574537 142574590 - 10.7906334069 18 0.743801022354 -10.0886054893 20.8792388962 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;142574536;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142574537-142574590-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A142574537-142574590&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.688407183805 0.623850800761 1.05155101475 143655898 143655951 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;143655897;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142574537-142574590-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A143655898-143655951&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EKILPWVDNVASRMVYYFSSSPHVSPPHSR Same 589056 chr8:142574537-142574590- 1652 1652 445 0 902 142572180 142575904 1386 1386;1889;2097;3879;8408;13162;50093;62741 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:142572180-142575904&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.537037037037 0.257142857143 8.88427222222 0.8664 -13.5907055556 22.4749777778 0.67848508158 0.943937645824 2170 1388 1388;1898;2170;2516;2563;4680;8183;28509 0.186905555556 0.4347 -21.6696611111 21.8565666667 0.420002552319 1.08617976792 3861 2925 2925;3250;3308;3738;3861;3909;7574;37771 0.0 0.148633807829 chr17:29566086-29566966- pseudogene extension MROH4P 6 new exons at 5' end 2099 534739 chr2:110346170-110346325+ NoOverlap chr2 110346170 110346325 + 4.37585193377 52 0.482133152573 -1.47498658128 5.85083851505 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110346169;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110346170-110346325%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110346170-110346325&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.294700496693 0.623550345583 1.04521660547 111103747 111103902 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111103746;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110346170-110346325%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111103747-111103902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSGAPQATLLSLMLLPPGLSSFEDHPCPPGHWCLGDQGAFFCPPGTFRSEPGASAQEDCELCPPGYHCPDPELQGHANVFAIPCPAGSECPAGEAAG Same 536091 chr2:110346170-110346325+ 2266 2266 -167 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.602564102564 0.0 10.9331480769 0.7831 -0.703807692308 11.6369557692 1.06192023554 1.03926713439 133 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 27.18935 0.7379 2.26211923077 24.9272307692 0.991747098342 1.03677150837 1248 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 2100 548832 chr22:40636864-40636890+ NoOverlap chr22 40636864 40636890 + 8.19627765814 9 0.926446428117 -7.5074773762 15.7037550343 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;40636863;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A40636864-40636890%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A40636864-40636890&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.122603524184 0.623516646263 0.966564904388 41032868 41032894 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;41032867;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A40636864-40636890%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A41032868-41032894&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPDFL*LTAR Same 550202 chr22:40636864-40636890+ 2006 2006 94 3 1285 40636406 40636954 1941 1941;2100;64710 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:40636406-40636954&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.75 7.83632222222 0.9417 -16.2743666667 24.1106888889 0.343637266287 0.950175390217 4778 Best 4778 4778;8739;61564 5.52323333333 0.3642 -16.9422 22.4654333333 0.193959582159 1.04345189178 6418 Best 6418 6418;10608;37470 0.0 0.0 not annotated putative regulatory region 2101 595942 chrX:153481540-153481635+ NoOverlap chrX 153481540 153481635 + 5.03706880659 32 0.542852578775 -2.7344250204 7.77149382699 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;153481539;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153481540-153481635%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A153481540-153481635&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.269783405013 0.623502027478 1.06123060964 152746998 152747093 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;152746997;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153481540-153481635%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A152746998-152747093&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HADLGTTQQAMPSLPASCLLAQAVIACGNVKMKHVPALTHPGLTTLYLAGGWPPRPTPTPAAGVR Same 596583 chrX:153481540-153481635+ 2264 2264 -163 0 1397 153481540 153486067 2093 2093;2101;2242;2901;9240;10410;14641;25631 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:153481540-153486067&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.635416666667 0.324324324324 4.757390625 0.8066 -6.913459375 11.67085 0.678905593789 1.08562096798 2169 1899 1899;2169;2617;3156;4527;4610;7126;15622 9.95398125 0.6688 -15.93745 25.89143125 0.976150442597 1.05541702587 1497 550 550;891;987;1399;1497;1593;2015;2812 0.0 0.0684071446577 chr15:74132755-74133168+ ENST00000370210.3 AntiUTR5intron pseudogene unitary pseudogene ENSG00000224963 2106 573707 chr6:9840243-9840284- NoOverlap chr6 9840243 9840284 - 13.7620213862 14 0.911604486152 -2.80878589834 16.5708072845 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;9840242;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9840243-9840284-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A9840243-9840284&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.614107558203 0.622762214933 1.00005154267 9840476 9840517 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;9840475;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9840243-9840284-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A9840476-9840517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HNGNFYDVGVYFHENLYVVSSLSTSSLFFLLSFSTLPIYLHLLSLFMSL Same 574736 chr6:9840243-9840284- 1952 1952 154 0 635 9840243 9840436 979 979;2106 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:9840243-9840436&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.404761904762 0.636363636364 18.6920071429 0.9702 -3.1187 21.8107071429 0.850294706615 0.971515279341 1462 Best 1462 1462;2422 29.3855785714 0.745 -11.0765214286 40.4621 1.04162566815 0.998420810092 456 Best 456 456;610 0.0 0.0 ENST00000469426.5,ENST00000460363.6,ENST00000460066.5 NC,CDSintron,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 2113 571292 chr6:36311797-36311838+ NoOverlap chr6 36311797 36311838 + 9.35858575361 14 0.968160960882 -2.01411425216 11.3727000058 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;36311796;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A36311797-36311838%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A36311797-36311838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.485425798334 0.621466352244 1.03672733418 36279574 36279615 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;36279573;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A36311797-36311838%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A36279574-36279615&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAPCPLNFPLLSTSETVWVTYRPHPSR Same 572319 chr6:36311797-36311838+ 2013 2013 100 0 1411 36311797 36311838 Best 2113 2113 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:36311797-36311838&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52380952381 0.0 5.84506428571 0.9882 -7.5247 13.3697642857 0.483066470044 1.05091326122 3251 Best 3251 3251 8.3774 0.3515 -7.10471428571 15.4821142857 0.302280931965 0.929577583965 4607 Best 4607 4607 0.0 0.0 coding exon(s) PNPLA1 alternative final coding exon 2114 485921 chr11:111450349-111450399+ NoOverlap chr11 111450349 111450399 + 10.7250352116 17 0.817303730831 3.97151767331 6.75351753831 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111450348;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111450349-111450399%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111450349-111450399&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.682654682992 0.621300196089 0.919794987617 111321074 111321124 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111321073;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111450349-111450399%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111321074-111321124&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FQDFYLLDQPSPPRAVGHPCNLDLGQK Same 487879 chr11:111450349-111450399+ 2055 2055 59 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.627450980392 0.220779220779 9.27077058824 0.9788 4.98765882353 4.28311176471 0.469843747856 0.640504068692 3345 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 10.2472176471 0.3491 6.19662352941 4.05059411765 0.172874923089 0.526103169589 7044 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000531009.1,ENST00000525890.1 NC,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 2120 502681 chr14:97230200-97230331+ NoOverlap chr14 97230200 97230331 + 1.99014764889 44 0.86678457729 -5.7969545708 7.78710221969 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;97230199;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A97230200-97230331%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A97230200-97230331&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0408265650719 0.619817726488 1.08303600956 97696537 97696668 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;97696536;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A97230200-97230331%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A97696537-97696668&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSSVLYLFGNDEFQMNSS*CSACEGRQTNRAQNCRFSTQQVQQGRTRQMALPSQPR Same 504585 chr14:97230200-97230331+ 2067 2067 53 13 1417 97230200 97230331 Best 2120 2120 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:97230200-97230331&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.477272727273 0.532258064516 -0.402163636364 0.9115 -8.12260227273 7.72043863636 0.346125097137 1.02889843641 4735 Best 4735 4735 -3.52171818182 0.3424 -12.5182068182 8.99648863636 0.179335012322 0.86082251182 6811 Best 6811 6811 0.0 0.0 not annotated putative regulatory region 2126 575158 chr6:44387924-44387962- NoOverlap chr6 44387924 44387962 - 5.60499990903 13 0.85134308737 -7.27643852738 12.8814384364 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;44387923;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A44387924-44387962-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A44387924-44387962&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.10627328019 0.619330526706 0.996976388585 44355661 44355699 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;44355660;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A44387924-44387962-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A44355661-44355699&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPHRVSSSPPRPPRACAQAAR Same 576192 chr6:44387924-44387962- 1995 1995 131 0 1423 44387871 44387962 Best 2126 2126;67451 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:44387871-44387962&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.794871794872 1.24090909091 -3.15844615385 0.8851 -12.7428615385 9.58441538462 0.0285152479545 0.962551065535 29274 Best 29274 29274;63158 -6.81420769231 0.4626 -16.0350769231 9.22086923077 0.00662379185955 0.700282003494 32209 28923 28923;32209 0.0 0.0 ENST00000371477.3 AntiCDSintron not annotated putative regulatory region 2129 585768 chr8:8714226-8714285- NoOverlap chr8 8714226 8714285 - 8.25852998495 20 0.692607003891 0.266084849834 7.99244513512 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;8714225;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A8714226-8714285-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A8714226-8714285&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.575461656712 0.618760625992 1.03258084188 8571736 8571795 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;8571735;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A8714226-8714285-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A8571736-8571795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WWEYSTGSNRCSKDHGGCGHICIPDPEGQILR Same 586705 chr8:8714226-8714285- 2218 2218 -89 0 139 8702390 8719546 167 167;2129;3075;3753;6028;26012 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:8702390-8719546&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.483333333333 0.0 13.67432 0.7562 0.35508 13.31924 0.687956158899 1.04865006154 2137 1679 1679;1680;2137;2318;4483;35378 17.57644 0.3735 -0.8327 18.40914 0.705663246577 0.9977528047 2793 Best 2793 2793;3236;3426;3823;4475;30167 0.0 0.0 pseudogene unitary pseudogene ENSG00000284717 2133 580621 chr7:25753491-25753589- NoOverlap chr7 25753491 25753589 - 5.05635759325 33 0.999251845532 -0.337597014495 5.39395460774 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;25753490;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A25753491-25753589-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A25753491-25753589&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.625830565221 0.618398686575 0.972686975224 25793111 25793209 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;25793110;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A25753491-25753589-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A25793111-25793209&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDVVIAAADGLTDSFRSAT*GPLVSLSGDWQLNDTNEAGPVFPLGMPP Same 581590 chr7:25753491-25753589- 2480 2480 -347 13 1429 25753491 25753602 Best 2133 2133;67786 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:25753491-25753602&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575757575758 0.368486352357 2.1180969697 0.971 -1.17347878788 3.29157575758 0.254827256739 0.695497908786 6833 Best 6833 6833;72057 -2.1052 0.8919 -5.06977878788 2.96457878788 0.0921120085943 0.581635742184 12335 Best 12335 12335;66979 0.0 0.0 not annotated putative regulatory region 2137 618512 chr11:55715635-55715679+ Extension chr11 55715635 55715679 + 15.985726738 15 0.760006103609 3.20318665504 12.7825400829 chr11:55715431-55715679+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;55715634;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A55715635-55715679%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A55715635-55715679&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.645089407449 0.617812431715 0.99953221211 55483111 55483155 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;55483110;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A55715635-55715679%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A55483111-55483155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VASVFYTVVIPMLNPLIYSLRNKDVKETVR Same 619214 chr11:55715635-55715679+ 2279 2279 -142 0 287 55714823 55715679 377 377;2137 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:55714823-55715679&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.422222222222 0.0 18.5274866667 0.7548 3.00046666667 15.52702 0.551443437555 1.01872670388 2809 36 36;2809 56.31162 0.8806 5.16138666667 51.1502333333 0.988770951132 1.00869664577 1292 748 748;1292 0.108859675634 chr11:55773438-55774382+ 0.251232939047 chr11:56641489-56642439- pseudogene extension OR5D2P pseudogene extended (ENSG00000254457) 2138 469003 chr1:216521872-216521946+ NoOverlap chr1 216521872 216521946 + 4.93385193825 25 0.96690562295 -2.76874005675 7.702591995 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;216521871;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A216521872-216521946%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A216521872-216521946&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.45336608065 0.617806669019 1.05060242397 216695214 216695288 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;216695213;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A216521872-216521946%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A216695214-216695288&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTDTNLRSHGRINTEKKRGINVNLVLMMEKAR Same 470882 chr1:216521872-216521946+ 2402 2402 -264 0 1433 216503390 216521946 Best 2138 2138;6507;13807;38000;72611 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:216503390-216521946&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.426666666667 0.724637681159 3.116784 0.9926 -2.651476 5.76826 0.359065145084 0.849749558838 4547 Best 4547 4547;8285;24475;37603;53108 -0.635716 0.967 -6.385732 5.750016 0.126258695193 0.665019016559 9393 Best 9393 9393;17814;24382;28116;57830 0.0 0.0 ENST00000359162.6 AntiCDSintron not annotated putative regulatory region 2139 582000 chr7:100882699-100882761- NoOverlap chr7 100882699 100882761 - 6.90525719098 21 0.812368527177 -0.312180959043 7.21743815002 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100882698;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100882699-100882761-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100882699-100882761&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.602850987847 0.617764296382 1.01485719678 100480320 100480382 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100480319;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100882699-100882761-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100480320-100480382&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPVLALFKEEEQKEDEEEEEQEGGKRWLIK Same 582960 chr7:100882699-100882761- 2094 2094 45 0 402 100882699 100896048 564 564;2139;2309;3733;10134;33066;33794;47001;47408;61791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100882699-100896048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.0 0.407652380952 0.9406 -0.879757142857 1.28740952381 0.0133013091932 0.425804883964 35393 1085 1085;2762;12277;14242;15089;33604;35393;48431;52932;53395 -2.39954761905 0.4805 -6.68230952381 4.28276190476 0.0456640845111 0.574753962568 19629 1829 1829;3172;9515;15507;19629;23787;40273;49567;60478;62610 0.0 0.0 ENST00000474896.1,ENST00000611405.4,ENST00000423692.5 AntiNC,AntiCDSintron,AntiNCintron pseudo-exon UFSP1 is a retrogene that has apparently evolved to use a downstream ATG, so this is 5' pseudo-exon sequence 2140 534730 chr2:110341310-110341426+ NoOverlap chr2 110341310 110341426 + 6.29857943837 39 0.646971181968 2.35878458046 3.93979485791 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110341309;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110341310-110341426%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110341310-110341426&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.6954857202 0.617644562998 0.873706506319 111098887 111099003 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111098886;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110341310-110341426%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111098887-111099003&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MFLSMVSEGLSCPPGHFCGASGLAAPSGPCSPGYFCLAGASSPTPTGVEPPGSG Same 536082 chr2:110341310-110341426+ 2185 2185 -45 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.692307692308 0.229411764706 9.76251282051 0.7776 2.46176153846 7.30075128205 0.807083715033 0.995265496251 1644 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 28.5357307692 0.7517 8.41988717949 20.1158435897 1.05650627599 1.0348468947 251 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 2142 477237 chr10:38247919-38248044+ NoOverlap chr10 38247919 38248044 + 7.76375483899 42 0.389549386551 3.02015476567 4.74360007331 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;38247918;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38247919-38248044%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A38247919-38248044&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.469224711614 0.61740976713 0.957165913892 38536847 38536972 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;38536846;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38247919-38248044%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A38536847-38536972&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAPLTFLCFCFLFQSQQKCIMMFALVCCFAILVALIFSAVDIMGEDEDGLSEKNCQNK Same 479130 chr10:38247919-38248044+ 2427 2427 -285 0 1435 38247919 38248044 Best 2142 2142 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:38247919-38248044&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.492063492063 0.133333333333 24.4963238095 0.9383 10.5519285714 13.9443952381 1.02513773941 1.0389033465 524 Best 524 524 46.0403666667 0.8591 18.3741404762 27.6662261905 0.954588391062 1.043268372 1769 Best 1769 1769 0.973321469586 chr1:242348106-242348242- 0.951780648704 chr1:242348106-242348242- ENST00000450980.1 NC pseudogene phospholipase D family member 5 (PLD5) pseudogene (ENSG00000226113) 2153 581617 chr7:81574077-81574166- NoOverlap chr7 81574077 81574166 - 3.84833009144 30 0.839923704891 -3.45717667739 7.30550676882 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;81574076;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81574077-81574166-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A81574077-81574166&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.362961426639 0.616060359532 1.05611449205 81203393 81203482 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;81203392;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81574077-81574166-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A81203393-81203482&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YIPDAPMNIYENLSVGTKLVRLTATDRDIRHSVHYELIGTQK Same 582576 chr7:81574077-81574166- 2121 2121 32 0 592 81560120 81607572 904 904;925;973;1260;1465;2153;3581;4237;4691;5577 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:81560120-81607572&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.388888888889 0.0 0.70359 0.9993 -10.0007666667 10.7043566667 0.509941257453 1.09270709023 3071 1152 1152;1609;1628;2206;2439;2771;3071;3088;3130;3532 0.56897 0.4653 -10.9891933333 11.5581633333 0.36715756541 0.916295935406 4138 2526 2526;2821;2931;3052;3114;3116;3529;3585;4138;5392 0.0 0.0 pseudogene unitary pseudogene ENSG00000233491 2155 500531 chr13:113406906-113406950- NoOverlap chr13 113406906 113406950 - 16.7070599516 15 0.737499046311 7.11703332265 9.59002662897 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;113406905;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113406906-113406950-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A113406906-113406950&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.636322988344 0.615583033152 0.889396382794 114061221 114061265 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;114061220;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113406906-113406950-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A114061221-114061265&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTWPPGPPGECAGEGPEITMTVCSSEDEREGAGFPDPGR None NA NA 0 100 113403390 113410417 120 120;186;577;628;905;2155;43193 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:113403390-113410417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.0 15.31696 0.8089 0.324513333333 14.9924466667 0.582945095989 1.03126836123 2642 325 325;568;804;826;1027;2642;38380 11.9326866667 0.5945 -10.2156333333 22.14832 0.706180394297 1.04836984626 2789 110 110;511;615;1448;1864;2789;42035 0.0 0.0 coding exon(s) ADPRHL1 alternative final coding exon 2157 467981 chr1:171623932-171623982+ NoOverlap chr1 171623932 171623982 + 8.37647638251 17 0.799202042914 -1.14720008303 9.52367646554 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;171623931;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A171623932-171623982%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A171623932-171623982&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.560809398908 0.61488407428 1.04918128063 171593072 171593122 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;171593071;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A171623932-171623982%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A171593072-171593122&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLTSEVTRRRVTMITRYPK Same 469847 chr1:171623932-171623982+ 2155 2155 2 0 1446 171623932 171623982 Best 2157 2157 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:171623932-171623982&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.56862745098 0.735576923077 5.80505294118 0.9154 0.226588235294 5.57846470588 0.275262811656 0.762522971777 6217 Best 6217 6217 5.80505294118 0.2861 0.226588235294 5.57846470588 0.0984288054346 0.600169183615 11662 Best 11662 11662 0.0 0.0 protein-coding gene protein coding gene ENSG00000283683 2158 582908 chr7:143639739-143639837- NoOverlap chr7 143639739 143639837 - 8.59770009102 33 0.495002670329 4.403778828 4.19392126302 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143639738;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143639739-143639837-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143639739-143639837&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.611099190191 0.614840350823 0.86322335399 143336832 143336930 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143336831;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143639739-143639837-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143336832-143336930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DNTGRMNLWVKKFSEKVKKNLVPFFEAWGWPIQKEVADSLASLPEWQENPMQVYLR Same 583837 chr7:143639739-143639837- 2299 2299 -141 0 72 143639739 143647639 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.484848484848 0.0 15.5647212121 0.9619 2.00216666667 13.5625545455 1.05169350692 1.0413261669 237 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 34.6270575758 0.8568 -1.7860969697 36.4131545455 1.00403951072 0.992455120584 1051 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.921803333872 chr7:143727413-143727667+ 0.791316794276 chr7:143727413-143727667+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 2160 587973 chr8:133823295-133823321- NoOverlap chr8 133823295 133823321 - 7.49896653493 9 0.807465052601 -13.4515112903 20.9504778253 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;133823294;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A133823295-133823321-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A133823295-133823321&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0592884172122 0.614120055834 0.99941420869 134835538 134835564 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;134835537;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A133823295-133823321-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A134835538-134835564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FNLVKSQEIEQDAAR Same 588919 chr8:133823295-133823321- 1761 1761 399 0 1448 133823295 133823321 Best 2160 2160 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:133823295-133823321&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.0 -3.84264444444 0.9203 -23.5717888889 19.7291444444 0.0926521635632 1.01197700091 16697 Best 16697 16697 -8.11256666667 0.4182 -27.4504444444 19.3378777778 0.0422693311038 0.96827034392 20421 Best 20421 20421 0.0 0.0 not annotated potentially spurious 2162 493946 chr12:132509505-132509570+ NoOverlap chr12 132509505 132509570 + 7.04689544981 22 0.670471018262 -0.985313670202 8.03220912001 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132509504;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509505-132509570%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132509505-132509570&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.498398532411 0.613654144221 1.04485543656 133086091 133086156 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;133086090;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509505-132509570%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A133086091-133086156&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SRPAQPCRPHWALPGPRQCCRRLRSLLTPCHHCR Same 495937 chr12:132509505-132509570+ 2272 2272 -110 0 98 132509173 132510440 116 116;202;637;794;2162;3860;16489;25303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132509173-132510440&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.757575757576 0.535714285714 16.1258681818 0.861 0.927445454545 15.1984227273 0.857307918865 1.03502745789 1440 6 6;93;263;1110;1440;2944;5926;7480 6.44535454545 0.5359 -3.07884090909 9.52419545455 0.392964340597 0.794958782822 4003 2003 2003;2026;2435;2663;4003;7601;8523;55779 0.0 0.0540125007787 chr19:39913690-39914257- ENST00000542061.2,ENST00000434748.2 NC,CDSintron coding exon(s) FBRSL1 alternative final coding exon 2163 501016 chr14:28760181-28760210+ NoOverlap chr14 28760181 28760210 + 9.70566005707 10 0.928969253071 -6.45558983088 16.1612498879 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28760180;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28760181-28760210%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28760181-28760210&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.278239743981 0.613547724431 0.967927675523 29229387 29229416 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29229386;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28760181-28760210%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29229387-29229416&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTLAVTASRGK Same 502908 chr14:28760181-28760210+ 2062 2062 101 0 1450 28760181 28778530 Best 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.375 3.49209 0.9601 -10.95991 14.452 0.221562811313 1.04266124984 7918 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 0.0863 0.3454 -13.64587 13.73217 0.0594200051819 0.858268226465 16948 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.0 ENST00000546560.5 AntiNCintron not annotated putative regulatory region 2164 546572 chr21:31160930-31160956+ NoOverlap chr21 31160930 31160956 + 8.50649982029 9 0.874068987733 -9.19787764549 17.7043774658 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;31160929;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A31160930-31160956%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A31160930-31160956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.143410489297 0.613448257946 0.956577501405 32533247 32533273 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;32533246;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A31160930-31160956%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A32533247-32533273&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SADWPASCTAQEY Same 547988 chr21:31160930-31160956+ 2037 2037 127 0 1451 31160930 31160956 Best 2164 2164 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:31160930-31160956&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.0 4.32612222222 0.9192 -19.4325 23.7586222222 0.236893564205 0.940642163887 7386 Best 7386 7386 3.98111111111 0.4232 -24.2698333333 28.2509444444 0.262509335474 1.06591048742 5044 Best 5044 5044 0.0 0.0 ENST00000286827.7 AntiCDSintron not annotated putative regulatory region 2165 527134 chr19:10044071-10044181+ NoOverlap chr19 10044071 10044181 + 6.4660027015 37 0.669439272186 2.70808652849 3.75791617302 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;10044070;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A10044071-10044181%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A10044071-10044181&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.728178816441 0.613443723584 0.844035013045 10154747 10154857 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;10154746;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A10044071-10044181%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A10154747-10154857&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VWNVVEEHDIGCTGGSGKDRFAVFKDAGLDLKISTGMDSLASSGTGFGGWGK Same 528580 chr19:10044071-10044181+ 2206 2206 -41 0 68 10044071 10052967 77 77;2165;5660;9001 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:10044071-10052967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.486486486486 0.0 11.7067189189 0.7191 5.40620540541 6.30051351351 0.781386235102 0.932292191058 1747 16 16;1747;2188;3282 33.9029081081 0.7939 11.3336432432 22.5692648649 1.02579736668 1.04517514992 682 327 327;682;1174;2985 0.0 0.388717858465 chr19:6707800-6707929- ENST00000495140.1 NCintron pseudogene C3P1 transcribed unprocessed pseudogene (ENSG00000167798) 2166 503791 chr14:34963987-34964040- NoOverlap chr14 34963987 34964040 - 7.50445006291 18 0.90241346863 -0.857527752717 8.36197781563 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;34963986;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34963987-34964040-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A34963987-34964040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.569935710304 0.613390658738 1.03876091612 35433193 35433246 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;35433192;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34963987-34964040-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A35433193-35433246&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GYLSSSAVQLYGVELKGDFSPIAGNGHK Same 505634 chr14:34963987-34964040- 2123 2123 43 0 551 34954880 34969313 836 836;1153;1921;2166;5306;5436 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:34954880-34969313&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.425925925926 0.0 12.4075888889 0.9931 0.3525 12.0550888889 0.846571877683 1.04082165669 1486 816 816;1162;1336;1486;1625;4048 23.3223833333 0.7236 1.43800555556 21.8843777778 0.985642867928 1.02367140879 1335 390 390;1335;1542;1847;2704;3383 0.0 0.0 ENST00000554945.1,ENST00000556355.5 NC,NCintron pseudogene unitary pseudogene ENSG00000258704 2168 538868 chr2:62789658-62789699- NoOverlap chr2 62789658 62789699 - 5.82549291849 14 0.972850930255 -5.72308574404 11.5485786625 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62789657;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62789658-62789699-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62789658-62789699&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.162439016455 0.613284293243 1.02865866695 63016793 63016834 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;63016792;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62789658-62789699-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A63016793-63016834&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPVQWVGRCMHWHSVWNQELT Same 540246 chr2:62789658-62789699- 2349 2349 -181 0 1453 62789658 62789699 Best 2168 2168 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62789658-62789699&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.547619047619 0.0 0.70895 0.994 -10.24305 10.952 0.202416949039 1.02853085147 8666 Best 8666 8666 -10.4172714286 0.4991 -19.5720214286 9.15475 -0.00884031658108 0.67829528391 40243 Best 40243 40243 0.0 0.0 ENST00000263991.9,ENST00000426940.5,ENST00000494958.1 AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 2173 563858 chr5:35789624-35789689+ NoOverlap chr5 35789624 35789689 + 6.34863630073 22 0.913248992558 -0.567068189383 6.91570449011 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;35789623;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35789624-35789689%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A35789624-35789689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.60163548975 0.612839134652 1.00793066344 35789726 35789791 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;35789725;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35789624-35789689%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A35789726-35789791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQGCFRDASQNVVRATVIGSFKLWPTK Same 564846 chr5:35789624-35789689+ 2187 2187 -14 0 24 35787955 35790367 24 24;33;42;72;207;789;797;872;1069;2173;48626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:35787955-35790367&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.469696969697 0.3 10.7838545455 0.9999 -0.882963636364 11.6668181818 0.889503535392 1.05291534608 1329 20 20;37;72;448;957;1150;1273;1329;1548;1888;12605 13.3603318182 0.5942 -1.97947727273 15.3398090909 0.759534757001 0.956875775668 2608 77 77;86;112;376;544;1371;1761;1786;2084;2608;14924 0.0 0.0 ENST00000506526.5,ENST00000356031.7,ENST00000510433.1 NC,CDSintron,AntiNCintron coding exon(s) SPEF2 5 consecutive coding exons including an alternative termination codon 2178 516003 chr17:3846277-3846312+ NoOverlap chr17 3846277 3846312 + 4.6138416628 12 0.847487347728 -8.71558345358 13.3294251164 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;3846276;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A3846277-3846312%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A3846277-3846312&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0817807448119 0.61242130064 0.981689473127 3749571 3749606 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;3749570;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A3846277-3846312%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A3749571-3749606&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAAATGHRGAAAAT Same 517380 chr17:3846277-3846312+ 1998 1998 180 0 1461 3846277 3846312 Best 2178 2178 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:3846277-3846312&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.75 0.8 2.60275 0.8709 -9.75100833333 12.3537583333 0.170964268783 1.04294925096 10238 Best 10238 10238 -1.694775 0.5419 -20.6492833333 18.9545083333 0.218400737258 1.01243612758 5784 Best 5784 5784 0.0 0.0 not annotated putative regulatory region 2183 577217 chr7:5636614-5636676+ NoOverlap chr7 5636614 5636676 + 5.51783332938 21 0.906801527355 -2.84165718726 8.35949051664 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;5636613;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A5636614-5636676%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A5636614-5636676&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.448414263626 0.611754888443 1.05234971345 5676245 5676307 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;5676244;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A5636614-5636676%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A5676245-5676307&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MALCSQKPQQMLGWNSIGLLVRIKETGLIAVLMGTGQTEQNLR Same 578257 chr7:5636614-5636676+ 2219 2219 -36 0 1466 5636614 5636676 Best 2183 2183 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:5636614-5636676&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52380952381 0.710526315789 -0.836371428571 0.9984 -10.240547619 9.40417619048 0.232810306689 1.01656652995 7526 Best 7526 7526 -5.71667619048 0.4617 -17.2867285714 11.570052381 0.129713557662 0.853124800364 9153 Best 9153 9153 0.0 0.0 ENST00000389902.7,ENST00000389900.8 AntiCDSintron,AntiNCintron not annotated putative regulatory region 2186 476698 chr10:10798762-10798815+ NoOverlap chr10 10798762 10798815 + 7.82563322617 18 0.810873748548 -0.766822321547 8.59245554772 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;10798761;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A10798762-10798815%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A10798762-10798815&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.570381642908 0.611489192752 1.04242310755 10840725 10840778 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;10840724;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A10798762-10798815%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A10840725-10840778&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TMVSLVSDLDPLKNWKVLR Same 478592 chr10:10798762-10798815+ 2153 2153 33 0 1469 10798762 10798815 Best 2186 2186 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:10798762-10798815&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.388888888889 0.0 8.73023888889 0.9679 -2.53334444444 11.2635833333 0.662529700087 1.04104152244 2239 Best 2239 2239 14.5339166667 0.6479 -4.35647777778 18.8903944444 0.794459825417 1.00797807236 2501 Best 2501 2501 0.0 0.0 coding exon(s) CELF2 two coding exons at 5' 2187 524605 chr18:54421453-54421557+ NoOverlap chr18 54421453 54421557 + 2.28430571556 35 0.69809937983 -6.07130286587 8.35560858143 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;54421452;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54421453-54421557%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A54421453-54421557&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00607017884155 0.611309934041 1.07411462287 51947823 51947927 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;51947822;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54421453-54421557%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A51947823-51947927&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGIIGTQSTIEFNTPIGDVIFFTIGIQHYIKSTCD*DLLFILAYNPEDWVR Same 526041 chr18:54421453-54421557+ 2281 2281 -94 9 663 54415278 54424623 1020 1020;1399;1951;1974;2187;2640;3987;7059;26481;56311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:54415278-54424623&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.361904761905 0.0 4.05456857143 0.8473 -8.58541142857 12.63998 0.749233748818 1.08011873218 1867 1312 1312;1532;1793;1867;1963;3255;3308;3468;3714;4481 14.2791057143 0.5709 -7.99632571429 22.2754314286 1.05096467221 1.06258048806 311 85 85;217;311;1380;1426;2121;2398;2457;2578;2838 0.0 0.0 pseudogene unitary pseudogene ENSG00000283613 2190 470905 chr1:26166032-26166109- NoOverlap chr1 26166032 26166109 - 7.85807699653 26 0.689997711147 3.39208463809 4.46599235844 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;26166031;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26166032-26166109-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A26166032-26166109&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.716409370411 0.610899600471 0.838309032836 26492523 26492600 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;26492522;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26166032-26166109-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A26492523-26492600&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ENPALVGSETAEPTEETFNPMSQLARRVSILPSSTPTLGSLAEASVESWEVVLDPLPDSQPLSQVQGVGVK None NA NA 0 99 26164164 26171664 118 118;480;770;917;2190;2831;39672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:26164164-26171664&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.615384615385 0.541666666667 13.8032076923 0.971 4.66375384615 9.13945384615 0.957498867591 1.0057528822 1046 207 207;447;663;1046;1279;1936;69663 21.9846076923 0.4837 6.28851538462 15.6960923077 0.953873140781 0.954400701718 1782 7 7;93;1782;1970;2239;2545;42994 0.0 0.0 protein-coding gene protein-coding gene ENSG00000282872 2191 503442 chr14:23100873-23100905- NoOverlap chr14 23100873 23100905 - 6.72567253763 11 0.939108179529 -6.46886375817 13.1945362958 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23100872;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23100873-23100905-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23100873-23100905&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.118579822813 0.610835509936 1.00147998634 23570082 23570114 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23570081;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23100873-23100905-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23570082-23570114&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EQQEGLAEAVLEALASK Same 505281 chr14:23100873-23100905- 2161 2161 30 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.545454545455 0.0 8.79791818182 0.9801 -5.95027272727 14.7481909091 0.50857545889 1.03669305235 3081 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 10.4857818182 0.3496 -5.34255454545 15.8283363636 0.250003256598 0.908428911728 5208 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 2192 560981 chr4:4735253-4735288- NoOverlap chr4 4735253 4735288 - 6.57691653818 12 0.953846545103 -5.93013341228 12.5070499505 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;4735252;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A4735253-4735288-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A4735253-4735288&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.156322983549 0.610391961509 1.0142301543 4736980 4737015 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;4736979;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A4735253-4735288-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A4736980-4737015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ACSLMGAFHHPVTLKR Same 561971 chr4:4735253-4735288- 2226 2226 -34 0 1472 4735253 4735288 Best 2192 2192 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:4735253-4735288&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.409090909091 3.41856666667 0.9584 -5.32431666667 8.74288333333 0.168598119274 0.926775981757 10370 Best 10370 10370 -0.481966666667 0.6957 -8.87070833333 8.38874166667 0.0759973027207 0.678388613047 14325 Best 14325 14325 0.0 0.0 not annotated putative regulatory region 2197 595021 chrX:40418610-40418660+ NoOverlap chrX 40418610 40418660 + 5.59412361243 17 0.92458273307 -4.60685889861 10.200982511 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;40418609;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A40418610-40418660%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A40418610-40418660&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.293590350587 0.610192734773 1.04849486392 40277862 40277912 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;40277861;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A40418610-40418660%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A40277862-40277912&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TEPHSPGFATTDVHHGSAK Same 595663 chrX:40418610-40418660+ 2256 2256 -59 0 1475 40418610 40418660 Best 2197 2197 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:40418610-40418660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.56862745098 0.25 7.83904705882 0.9595 -3.72265294118 11.5617 0.590144268824 1.04404598624 2596 Best 2596 2596 7.83904705882 0.2999 -3.72265294118 11.5617 0.250712413786 0.830148187535 5199 Best 5199 5199 0.0 0.0 not annotated putative regulatory region 2199 584633 chr8:76526197-76526244+ NoOverlap chr8 76526197 76526244 + 5.09494370595 16 0.912926298924 -5.80694380403 10.90188751 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;76526196;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A76526197-76526244%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A76526197-76526244&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.174359498521 0.610070149031 1.03676070062 77438432 77438479 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;77438431;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A76526197-76526244%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A77438432-77438479&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WEQASIMNDMLSDGLR Same 585564 chr8:76526197-76526244+ 2237 2237 -38 0 1477 76526118 76535635 Best 2199 2199;17625;44003 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:76526118-76535635&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4375 0.0 2.3105875 0.9993 -7.6321625 9.94275 0.298876429745 1.01097110299 5647 Best 5647 5647;11909;17282 -4.953375 0.7666 -16.9577 12.004325 0.0955863212217 0.837052154782 11951 8140 8140;11951;23455 0.0 0.0 ENST00000522961.1 AntiNCintron not annotated putative regulatory region 2200 582329 chr7:115732243-115732308- NoOverlap chr7 115732243 115732308 - 3.82836831293 22 0.921210040436 -5.63190451264 9.46027282558 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;115732242;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115732243-115732308-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A115732243-115732308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.162799130596 0.609954796616 1.05525061501 115372297 115372362 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;115372296;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115732243-115732308-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A115372297-115372362&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSNREV*SEMVAQCNGGKEVECQ*DGEGDR Same 583290 chr7:115732243-115732308- 2342 2342 -142 5 1478 115728598 115732308 Best 2200 2200;48660;68512 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:115728598-115732308&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.454545454545 0.528 0.335554545455 0.9994 -3.3685 3.70405454545 0.10138911623 0.648843514751 15691 Best 15691 15691;22043;24332 -9.97115 0.8587 -13.785 3.81385 -0.0308666866535 0.527094185287 57894 14511 14511;35054;57894 0.0 0.0 not annotated putative regulatory region 2206 589110 chr9:69151652-69151696+ NoOverlap chr9 69151652 69151696 + 14.9858733972 15 0.81480125124 -0.6809600691 15.6668334663 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;69151651;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A69151652-69151696%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A69151652-69151696&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.658133757535 0.608939565007 1.01611859546 71766568 71766612 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;71766567;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A69151652-69151696%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A71766568-71766612&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VRSTTLLSSPCEWDWHPGCSSR Same 590056 chr9:69151652-69151696+ 2258 2258 -52 0 193 69145704 69151696 234 234;2206 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:69145704-69151696&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 0.346153846154 26.2000066667 0.9591 0.4369 25.7631066667 0.813075339523 1.00253968064 1619 567 567;1619 33.0663266667 0.4857 -1.05988 34.1262066667 0.794233313939 1.03856795493 2502 886 886;2502 0.0 0.0 ENST00000377259.5 UTR5 coding exon(s) TJP2 alternative first coding exon and cassette 2207 552906 chr3:88467116-88467157+ NoOverlap chr3 88467116 88467157 + 5.63575715678 14 0.78938408048 -7.42861421193 13.0643713687 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88467115;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88467116-88467157%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88467116-88467157&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.14391317064 0.608775362061 0.989073219511 88516266 88516307 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88516265;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88467116-88467157%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88516266-88516307&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VIGQQPQAIDWLFYVK Same 553848 chr3:88467116-88467157+ 2056 2056 151 0 416 88466612 88467418 585 585;2207;4312;26019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88466612-88467418&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.47619047619 0.0 6.12312142857 0.9917 -12.6475785714 18.7707 0.572829078702 0.978848327843 2699 907 907;1471;2699;6077 5.06906428571 0.3532 -15.3171785714 20.3862428571 0.324035957253 1.04346629178 4407 2570 2570;3552;4407;12555 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283434 2208 549313 chr22:50546751-50546795+ NoOverlap chr22 50546751 50546795 + 11.8093800267 15 0.814332290634 0.287846748034 11.5215332786 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50546750;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50546751-50546795%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50546751-50546795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.617324265232 0.608638441908 1.02847896414 50985180 50985224 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;50985179;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50546751-50546795%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A50985180-50985224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEAGGMSAPLLIHFTPRSPGSEAEAETGGVR Same 550685 chr22:50546751-50546795+ 2261 2261 -53 0 132 50546280 50548166 159 159;2208;2547;11730 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50546280-50548166&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.47619047619 14.34096 0.9296 -1.84144666667 16.1824066667 0.740200886693 1.02452836263 1930 163 163;1188;1930;2331 13.6733 0.5497 -5.23147333333 18.9047733333 0.667946165483 0.996431192857 2938 2034 2034;2111;2881;2938 0.0 0.0224899143867 chr22:50447522-50447609- ENST00000434237.1 NCintron coding exon(s) KLHDC7B 5' extension 2215 549845 chr22:30969359-30969787- NoOverlap chr22 30969359 30969787 - 6.0825217261 143 0.922691926217 7.20306226259 -1.1205405365 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30969358;429;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969359-30969787-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30969359-30969787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.970677599813 0.608029673863 0.379799955116 31365345 31365773 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31365344;429;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969359-30969787-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31365345-31365773&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QSRNPTTNHPPAPSCPPNWVLAGPEGWRQASKPAPATPASPAAPNPAAAAAAASPGAGRSSCPPPPTTRTTPRRIANA*AAARVLRTRRKTRRERQRPPGARRGGRACAPRAGCQSRRKSRQPIARSTARPFLRPTRPGRGGGRAR Same 551186 chr22:30969359-30969787- 1994 1994 221 66 396 30968818 30969787 554 554;2215;5416;5709;10618;10639;64375;71711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968818-30969787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.745920745921 1.01769128704 5.55325104895 0.8065 7.22491748252 -1.67166643357 0.437176374264 0.408226855703 3632 2943 2943;3632;14102;33814;35661;50818;50890;52885 4.51002517483 0.3138 5.82994195804 -1.31991678322 0.160204888592 0.51024492554 7559 3899 3899;7559;12847;33921;34528;35006;48262;54755 0.0 0.0 under investigation; now made coding Identifies a putative CDS within exonic sequence of lncRNA TUG1. The STOP codon and reading frame are conserved in mammals, although no ATG initiation codon has been found. The 5' NPR terminus falls close to a [CTG] codon that is conserved in mammals, which would demarcate a single exon 153aa CDS [chr22:30969357-30969818]. This translation has now been experimentally confirmed by Lewandowski et al in a manuscript submitted to bioRxiv (https://www.biorxiv.org/content/10.1101/562066v1), and TUG1 will be annotated as a protein-coding gene in GENCODEv32. 2216 505817 chr14:105708567-105708662- NoOverlap chr14 105708567 105708662 - 3.52339371666 32 0.508273727779 -6.05475318432 9.57814690098 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105708566;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105708567-105708662-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105708567-105708662&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0701577818008 0.607922750512 1.04503886501 106174904 106174999 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106174903;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105708567-105708662-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106174904-106174999&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPRPHSAFCVPASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTAR None NA NA 0 543 105704391 105719646 823 823;838;1248;1547;1711;2216;9225;18253;35962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105704391-105719646&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.4 1.237171875 0.9067 -16.48970625 17.726878125 0.798838580756 0.978517549508 1674 94 94;95;219;285;641;1432;1674;1887;5574 0.389240625 0.4505 -20.45959375 20.848834375 0.672215688169 1.11186476514 2922 51 51;686;1709;1746;1937;2386;2922;3268;6181 0.0 0.0663835462412 chr16:75234889-75235986- ENST00000390547.3,ENST00000618756.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 2224 494606 chr12:22134804-22134851- NoOverlap chr12 22134804 22134851 - 10.1125372835 16 0.765392538338 -0.42504363507 10.5375809185 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;22134803;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22134804-22134851-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A22134804-22134851&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.589500464155 0.607181025228 1.04174364425 22287738 22287785 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;22287737;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22134804-22134851-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A22287738-22287785&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPGFVLFCFVCAEENDVFLVSYPNSGTFVLMHFK Same 496603 chr12:22134804-22134851- 2311 2311 -87 0 58 22116633 22134940 65 65;1060;2224;6558;10486;27168 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:22116633-22134940&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.395833333333 0.0 8.031675 0.8779 -2.687825 10.7195 0.452723812454 1.02224236539 3486 904 904;2475;2558;2619;3486;6653 13.53139375 0.4272 -1.19763125 14.729025 0.512960484986 0.903555250737 3483 88 88;1118;2424;2918;3483;7533 0.0 0.0 ENST00000544732.5 NCintron pseudogene unitary pseudogene ENSG00000283582 2226 530784 chr19:31961652-31961678- NoOverlap chr19 31961652 31961678 - 11.8715779516 9 0.968734264134 -9.33431101756 21.2058889692 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;31961651;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A31961652-31961678-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A31961652-31961678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.292427506927 0.60701283983 0.970694737746 32452558 32452584 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;32452557;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A31961652-31961678-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A32452558-32452584&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTLQICSSNSSLLLL Same 532247 chr19:31961652-31961678- 2390 2390 -164 0 1495 31961652 31966868 Best 2226 2226;24190;29221;31471 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:31961652-31966868&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.407407407407 0.0 5.35514444444 0.992 -18.4879777778 23.8431222222 0.33654508318 0.942816983127 4902 Best 4902 4902;20668;24363;57262 -7.31578888889 0.5164 -34.8806111111 27.5648222222 0.141640280723 1.05799136681 8446 Best 8446 8446;24608;25248;31804 0.0 0.0 not annotated potentially spurious 2227 548076 chr22:21467895-21467999+ NoOverlap chr22 21467895 21467999 + 7.72005709921 35 0.455680170901 2.67030858397 5.04974851523 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21467894;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21467895-21467999%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21467895-21467999&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.482736085641 0.606955581855 0.951204508155 21822184 21822288 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21822183;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21467895-21467999%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21822184-21822288&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVAPTSVSLCSLLRRRSQAAQPLQGEAREAARERAERVRRRLEEAER Same 549496 chr22:21467895-21467999+ 2421 2421 -194 0 857 21467445 21469818 1328 1328;2227;3023;6657;7795;18550;21659 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21467445-21469818&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.761904761905 1.10062893082 9.34195142857 0.8168 1.50456285714 7.83738857143 0.787237955364 1.00736372466 1719 1035 1035;1287;1331;1719;1904;4183;5351 7.72600857143 0.4474 -0.248588571429 7.97459714286 0.494621647227 0.79906697152 3549 2446 2446;2467;2733;2842;3549;4935;9390 0.613069533312 chr22:18528559-18528682+ 0.693128161393 chr22:18528559-18528682+ ENST00000413877.5 NC protein-coding gene protein coding gene ENSG00000206140 2228 546543 chr21:26169453-26169515+ NoOverlap chr21 26169453 26169515 + 3.27805240949 21 0.772833128063 -7.21260456102 10.4906569705 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;26169452;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A26169453-26169515%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A26169453-26169515&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0179182213834 0.606888332191 1.0352887966 27541771 27541833 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;27541770;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A26169453-26169515%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A27541771-27541833&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNQTNASLDAQDRARASPPSATALSRRTSHSPPYFLPAK Same 547959 chr21:26169453-26169515+ 2145 2145 83 0 1496 26169453 26170881 Best 2228 2228;14589;18597;43146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:26169453-26170881&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.650793650794 0.543103448276 -2.14969047619 0.9637 -9.73701904762 7.58732857143 0.0971867994071 0.917545676968 16161 8395 8395;15566;16161;55552 -4.33437142857 0.4269 -11.781552381 7.44718095238 0.0624385727763 0.701510578034 16407 7036 7036;7352;11231;16407 0.0 0.0 ENST00000455275.1,ENST00000346798.7,ENST00000359726.7,ENST00000474136.5 NCintron,AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 2229 475821 chr1:213988691-213988825- NoOverlap chr1 213988691 213988825 - 3.66835559209 45 0.677082475013 -2.15928896666 5.82764455875 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;213988690;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213988691-213988825-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A213988691-213988825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.339407066564 0.606839446053 1.03740163904 214162034 214162168 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214162033;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213988691-213988825-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214162034-214162168&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDQRQVQQHQPPPHRHRHPQPPAGKRKK*KPRGSLTLRNWEERSAEFHGGSR Same 477711 chr1:213988691-213988825- 2325 2325 -96 17 1497 213987582 214031537 Best 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.57037037037 0.464876033058 1.28394222222 0.905 -7.05362666667 8.33756888889 0.494701597803 1.06787072273 3179 Best 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -3.97649111111 0.4019 -9.37798666667 5.40149555556 0.0996336622141 0.716480002119 11547 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000261454.8,ENST00000366958.8 AntiUTR5,AntiUTR5intron not annotated potentially spurious 2233 492535 chr12:79935163-79935243+ NoOverlap chr12 79935163 79935243 + 7.22586669607 27 0.856263969776 4.26095925989 2.96490743618 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;79935162;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A79935163-79935243%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A79935163-79935243&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.840746545194 0.606007255007 0.674073909086 80328943 80329023 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;80328942;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A79935163-79935243%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A80328943-80329023&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPAPSTATRHRRPI*RNFARSGLGGALRPVRMRPGPVPAPGR Same 494517 chr12:79935163-79935243+ 2192 2192 41 9 1500 79934559 79935332 Best 2233 2233;6832;14345;23299 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:79934559-79935332&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.2375 4.71306296296 0.9208 5.43013703704 -0.717074074074 0.152419775284 0.294851692465 11401 7188 7188;11401;16080;58885 3.5618037037 0.415 0.953896296296 2.60790740741 0.13671890978 0.543601688006 8714 Best 8714 8714;10259;11130;55960 0.0 0.0 ENST00000552885.2,ENST00000450142.6,ENST00000261207.9 NC,AntiUTR5,AntiUTR5intron not annotated putative regulatory region 2238 521778 chr17:45169288-45169317- NoOverlap chr17 45169288 45169317 - 6.74183001518 10 0.854604409857 -8.37333986759 15.1151698828 ENST00000307275.7,ENST00000585340.1,ENST00000586681.5,ENST00000589230.5,ENST00000591576.5,ENST00000592695.1,ENST00000593138.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;45169287;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45169288-45169317-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A45169288-45169317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0649526828281 0.605887750361 0.965031985375 43246655 43246684 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;43246654;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45169288-45169317-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A43246655-43246684&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPVIHQELGGVVGGHGLAFGEHLFADPGGPLALPLIPLLFLSPAQLQVGSPVPFALR Same 523203 chr17:45169288-45169317- 2053 2053 185 0 1505 45161411 45169317 Best 2238 2238;3807;36705 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:45161411-45169317&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.633333333333 0.384615384615 6.55999 0.9654 -13.62947 20.18946 0.394501944098 0.966307811378 4076 Best 4076 4076;22428;69281 -11.68127 0.9683 -44.59607 32.9148 0.0660132457574 1.00365157672 15798 Best 15798 15798;20895;55189 0.0 0.0 ENST00000589796.2,ENST00000307275.7 NC,AntiCDS not annotated putative regulatory region 2240 491264 chr12:48773525-48773560+ NoOverlap chr12 48773525 48773560 + 5.07810829083 12 0.920824750134 -7.54255850116 12.620666792 ENST00000307885.4,ENST00000357869.7,ENST00000550422.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;48773524;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A48773525-48773560%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A48773525-48773560&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0279715860342 0.605478094439 1.00370182113 49167308 49167343 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49167307;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A48773525-48773560%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49167308-49167343&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DGGWGTQQKQHQIDEPQDK Same 493241 chr12:48773525-48773560+ 2238 2238 2 0 154 48759259 48773560 184 184;484;2240;4028 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:48759259-48773560&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.0 1.502975 0.9659 -11.2150083333 12.7179833333 0.195676313538 1.04876042115 8960 399 399;531;2175;8960 -12.4909833333 0.9134 -45.9774916667 33.4865083333 0.115543751593 0.996187506651 10183 281 281;2172;4005;10183 0.0 0.0 ENST00000307885.4,ENST00000547260.5 AntiCDS,AntiNC protein-coding gene protein-coding gene ENSG00000257987 2241 726928 chr9:35842391-35842438+ Extension chr9 35842391 35842438 + 13.6432252997 16 0.929667353323 9.4823625274 4.16086277226 chr9:35842391-35842714+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35842390;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35842391-35842438%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35842391-35842438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.701448398397 0.605240856362 0.597056113675 35842388 35842435 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35842387;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35842391-35842438%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35842388-35842435&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAGPSSGFLCPTECPQPGLLRALVPGAAMNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLR Same 727520 chr9:35842391-35842438+ 2224 2224 17 0 277 35829249 35842438 362 362;425;536;1007;2241;12378;33483;41023;50301;66958 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35829249-35842438&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.75 0.304761904762 20.17688125 1.0 11.1593 9.01758125 0.907051962012 0.85877026591 1277 527 527;571;572;815;1277;3226;54814;57000;63888;72554 35.37791875 0.9164 11.16585625 24.2120625 1.02216148954 1.00390619743 753 Best 753 753;986;1017;1241;1441;19083;51774;53783;58586;72919 0.0 0.153986776582 chr16:376136-376455- ENST00000377988.6,ENST00000464519.6,ENST00000473947.1 Extension5p,NC,NCintron coding exon(s) TMEM8B 5' extension by 5 exons 2242 595948 chrX:153485894-153485962+ NoOverlap chrX 153485894 153485962 + 4.99676510562 23 0.59073910058 -5.63613932029 10.6329044259 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;153485893;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153485894-153485962%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A153485894-153485962&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.189850333807 0.605211046923 1.02832631632 152751352 152751420 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;152751351;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153485894-153485962%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A152751352-152751420&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPGYAFAHMKPGLEFLHLSHNRLQADGIHSVSFLGLR Same 596589 chrX:153485894-153485962+ 2284 2284 -42 0 1397 153481540 153486067 2093 2093;2101;2242;2901;9240;10410;14641;25631 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:153481540-153486067&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.623188405797 0.306666666667 4.79130869565 0.7299 -10.4002 15.1915086957 0.586699394042 1.03686316653 2617 1899 1899;2169;2617;3156;4527;4610;7126;15622 17.4597826087 0.8988 -26.3197086957 43.7794913043 0.919175797289 0.799231991292 2015 550 550;891;987;1399;1497;1593;2015;2812 0.0 0.217205797755 chr9:92500727-92501053- ENST00000428676.1,ENST00000370210.3 NC,AntiUTR5intron pseudogene unitary pseudogene ENSG00000224963 2244 548037 chr22:20702136-20702264+ NoOverlap chr22 20702136 20702264 + 6.49179309884 43 0.477674808952 1.89480232985 4.59699076899 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;20702135;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20702136-20702264%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A20702136-20702264&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.491189583096 0.604857944253 0.949900762353 21056424 21056552 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21056423;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20702136-20702264%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21056424-21056552&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLGSVSTAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLPQPAPAGPER Same 549457 chr22:20702136-20702264+ 2408 2408 -164 0 1508 20702136 20704490 Best 2244 2244;3957;4169;8406;12453;12907;29209;29720;35559;56010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:20702136-20704490&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.643410852713 0.851740696279 11.9028976744 0.8329 -0.966988372093 12.8698860465 1.06207273313 1.02780092196 130 Best 130 130;847;1263;1735;2520;3116;3637;4021;20091;38948 13.2665325581 0.4703 -3.98733953488 17.253872093 1.0055376224 1.03934178576 1022 Best 1022 1022;2706;2800;2896;3161;3297;5293;6158;8692;8932 0.5588801896 chr22:18527981-18528276+ 0.602664391813 chr22:18527981-18528276+ ENST00000450925.6 NC pseudogene transmembrane protein 191A pseudogene (ENSG00000226287) 2246 538357 chr2:44167863-44167892- NoOverlap chr2 44167863 44167892 - 7.44300993085 10 0.969724574655 -6.22636002321 13.6693699541 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;44167862;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A44167863-44167892-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A44167863-44167892&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.118037563507 0.604712864629 0.996943858359 44395002 44395031 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;44395001;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A44167863-44167892-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A44395002-44395031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARMFPNNEIIADLSEPPSWDTCLTCTPEGEEWAGNWGVGR Same 539732 chr2:44167863-44167892- 2234 2234 12 0 1510 44167863 44168986 Best 2246 2246;55688 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:44167863-44168986&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 1.33333333333 1.83981 0.9903 -12.1888 14.02861 0.186802726707 1.04658052717 9376 Best 9376 9376;35251 1.06576 0.3528 -13.79166 14.85742 0.0840074636109 0.894099615439 13268 Best 13268 13268;35773 0.0 0.0 ENST00000609837.1 NC not annotated putative regulatory region 2247 500793 chr14:22929697-22929774+ NoOverlap chr14 22929697 22929774 + 5.24306528614 26 0.894805476815 -1.21544236747 6.45850765361 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22929696;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22929697-22929774%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22929697-22929774&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.561816531297 0.604381939601 1.007088779 23398906 23398983 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23398905;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22929697-22929774%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23398906-23398983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QCHLRASGAMDNASDYGSEDSRFDSWLAR Same 502685 chr14:22929697-22929774+ 2246 2246 1 0 1511 22928522 22929775 Best 2247 2247;5015;34457 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22928522-22929775&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.589743589744 0.891428571429 2.62858461538 0.9915 -3.65341153846 6.28199615385 0.363853648888 0.892697443777 4477 Best 4477 4477;20365;26902 3.80949230769 0.4491 -4.50276923077 8.31226153846 0.305968892854 0.776696569716 4571 Best 4571 4571;17788;54896 0.0 0.0 ENST00000548322.1 NC not annotated potentially spurious 2249 577012 chr7:291354-291410+ NoOverlap chr7 291354 291410 + 11.4263051215 19 0.632122650412 5.81683701277 5.60946810873 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;291353;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A291354-291410%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A291354-291410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.657504812904 0.604291721705 0.840345080831 331320 331376 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;331319;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A291354-291410%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A331320-331376&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EHPRDLKFSIDYILSSPDPFPGLKPPCLAQEGR Same 578052 chr7:291354-291410+ 2303 2303 -54 0 363 290122 291410 506 506;2249 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:290122-291410&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.614035087719 0.431818181818 16.5551157895 0.7258 5.93599473684 10.6191210526 0.627547999807 0.995479123913 2401 1372 1372;2401 39.8804894737 0.8814 18.7553315789 21.1251578947 1.04074068971 0.964504071423 470 Best 470 470;1378 0.0 0.154209950732 chr15:60004964-60005941+ ENST00000510017.1 NC protein-coding gene protein-coding gene ENSG00000248767 2250 562938 chr4:151175643-151175675- NoOverlap chr4 151175643 151175675 - 10.5551454073 11 0.89965389764 -6.55736374855 17.1125091558 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;151175642;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151175643-151175675-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A151175643-151175675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.377812195676 0.604266040574 0.966668431683 152096795 152096827 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;152096794;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151175643-151175675-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A152096795-152096827&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSMYVVLNLCIFYFFPYTLLTLWLVFICFGFVLVSSALQAPLKPLQPFSAVSSGNLPTNVAPLIVFDISEEPNCPENPSATR None NA NA 0 161 151175562 151187459 192 192;396;2038;2250;4391;9851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:151175562-151187459&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575757575758 0.0 14.5405 0.9842 -5.98080909091 20.5213090909 0.730034555838 0.975724393839 1972 84 84;931;1769;1951;1972;2039 15.9467545455 0.6297 -10.3103090909 26.2570636364 0.759614858707 1.05310507594 2607 878 878;883;2268;2607;3428;4439 0.0 0.0 ENST00000304527.8,ENST00000604030.5 UTR5,NC coding exon(s) SH3D19 5' coding exons 2254 475488 chr1:204256802-204256888- NoOverlap chr1 204256802 204256888 - 4.81346208679 29 0.877107520856 -1.27101039681 6.0844724836 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204256801;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204256802-204256888-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204256802-204256888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.554999049814 0.603639606176 1.000712467 204225930 204226016 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204225929;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204256802-204256888-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204225930-204226016&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQIPLTLSFSCWGTPCPSQTPHLCDPFLFQYDYLGDRRPVPAGLFPYNYPPSPTVHDKMVRPFSPPPVSGPPR Same 477373 chr1:204256802-204256888- 2233 2233 21 0 270 204243114 204256899 352 352;616;2254;47266 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204243114-204256899&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.574712643678 0.443123938879 3.92363448276 1.0 -0.934434482759 4.85806896552 0.432537763959 0.808913400956 3678 1246 1246;1477;3678;32366 26.9308862069 0.8239 1.42586551724 25.5050206897 1.04174942279 1.05390975846 451 Best 451 451;1562;1979;31464 0.0 0.0 ENST00000272203.7 CDSintron coding exon(s) PLEKHA6 4 cassette exons 2258 578349 chr7:73735456-73735500+ NoOverlap chr7 73735456 73735500 + 12.9596935272 15 0.782406347753 -0.266833488146 13.2265270154 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;73735455;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A73735456-73735500%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A73735456-73735500&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.62760036533 0.602803426792 1.0157362682 73149786 73149830 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;73149785;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A73735456-73735500%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A73149786-73149830&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TEPSLDQVLQERDEAIAK Same 579390 chr7:73735456-73735500+ 2381 2381 -123 0 117 73735456 73743100 140 140;963;2258;15809 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:73735456-73743100&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.577777777778 0.267857142857 18.3404933333 1.0 1.25858666667 17.0819066667 0.945637951558 1.01227063112 1112 284 284;1112;1678;4016 19.9815133333 0.5506 0.95272 19.0287933333 0.788947903453 0.975102062597 2522 136 136;2383;2522;8559 0.0 0.110935246648 chr12:120080887-120081017+ ENST00000427153.1 NC pseudogene unitary pseudogene ENSG00000225969 2270 579700 chr7:142715668-142715730+ NoOverlap chr7 142715668 142715730 + 5.29676667849 21 0.667057588275 -4.93710478289 10.2338714614 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142715667;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142715668-142715730%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142715668-142715730&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.259436349467 0.601068689377 1.04264523947 142423495 142423557 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142423494;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142715668-142715730%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142423495-142423557&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTVTCSQNMNHEYMSWYRQDPGLGLRQIYYSMNVEVTDK None NA NA 0 499 142715668 142721155 741 741;2270;13758;67177 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142715668-142721155&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.460317460317 0.302884615385 13.056352381 0.9958 -11.9038 24.960152381 0.92765377077 0.989304209167 1200 Best 1200 1200;1687;1696;2238 14.4842714286 0.5332 -20.7006047619 35.1848761905 0.893492772258 0.940531900085 2138 Best 2138 2138;2262;2888;3019 0.0 0.0 ENST00000390399.3,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 2274 591980 chr9:61063918-61063992- NoOverlap chr9 61063918 61063992 - 9.53814396381 25 0.452124208438 2.6202399832 6.91790398061 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61063917;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61063918-61063992-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61063918-61063992&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.450607158868 0.600792609989 1.00834112337 43894153 43894079 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;43894152;-73;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61063918-61063992-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A43894153-43894079&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EHISICSVSVVGGTATRQRGFLGCIRSLQLNGVALDLEER Different 592931 chr9:61063756-61063992- 281 281 1993 0 51 61063756 61073097 57 57;497;1416;2274;21077 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61063756-61073097&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586666666667 0.490196078431 13.326084 0.411 3.953032 9.373052 0.409185335296 1.01046680016 3904 1534 1534;1928;3000;3904;11180 48.440008 0.8149 19.110452 29.329556 0.98774827421 1.04124039759 1309 1059 1059;1309;1336;1510;1854 0.953255942517 chr9:41920070-41920309- 0.853845012666 chr9:41920070-41920309- pseudogene contactin associated protein-like 3B (CNTNAP3B) unprocessed pseudogene (ENSG00000283541) 2275 496183 chr12:70445721-70445807- NoOverlap chr12 70445721 70445807 - 4.74246557108 29 0.41505539288 -11.6553860527 16.3978516238 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70445720;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70445721-70445807-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70445721-70445807&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0816448855159 0.600718886759 0.925719887996 70839501 70839587 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70839500;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70445721-70445807-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70839501-70839587&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIIPFFHQNARSLTQQFHLTLAQARMIIKTCPDCQGHSLSPFSLELGANP Same 498183 chr12:70445721-70445807- 2002 2002 273 0 155 70445357 70448659 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.425287356322 1.11538461538 -1.92072758621 0.1496 -7.98855517241 6.06782758621 0.0148091592388 0.86478662888 34728 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 7.06236896552 0.1963 -10.5311586207 17.5935275862 0.488084295382 1.04973074358 3573 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 2276 574271 chr6:30058118-30058171- NoOverlap chr6 30058118 30058171 - 7.30579990811 18 0.822995345998 -1.40580557949 8.7116054876 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;30058117;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30058118-30058171-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A30058118-30058171&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.531341998146 0.600631122192 1.04660826633 30025895 30025948 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;30025894;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30058118-30058171-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A30025895-30025948&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAWGTSSKDPRIAAGQQSPLEKKILVSK Same 575300 chr6:30058118-30058171- 2235 2235 41 0 80 30056989 30058171 93 93;601;1036;2276;5125 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:30056989-30058171&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.0 6.74978888889 0.9498 -6.8041 13.5538888889 0.607709521455 1.05581926208 2503 903 903;1446;1727;2503;6815 7.92353333333 0.3401 -7.82478333333 15.7483166667 0.393964683749 0.964563414319 3993 2810 2810;3423;3544;3993;9246 0.0 0.0 ENST00000376797.7,ENST00000614729.1 NC,AntiNC pseudogene unitary pseudogene ENSG00000204623 2280 517068 chr17:33692259-33692357+ NoOverlap chr17 33692259 33692357 + 4.63313927885 33 0.437139996902 -4.93893945037 9.57207872922 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;33692258;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A33692259-33692357%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A33692259-33692357&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.121221437996 0.599442178063 1.03814184906 32019278 32019376 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;32019277;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A33692259-33692357%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A32019278-32019376&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MLVCILPVLINPSVPIIILFTLFTGTTITVFILH*LQVWIGLEVNILYIIPILS Same 518463 chr17:33692259-33692357+ 2395 2395 -115 15 943 33692259 33692461 1449 1449;2280 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:33692259-33692461&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.363636363636 0.0 -2.54073939394 0.1297 -4.10916363636 1.56842424242 0.00234069672998 0.493945303801 40315 35099 35099;40315 22.7582484848 0.5508 -4.65010606061 27.4083545455 1.09258432089 1.03662932266 72 Best 72 72;155 0.0 0.749540803028 chrM:4470-5511+ ENST00000359872.6 AntiCDSintron pseudogene MT-ND2 pseudogene (ENSG00000283381) 2283 516236 chr17:7430948-7430992+ NoOverlap chr17 7430948 7430992 + 12.8385799736 15 0.775799191272 -0.405313388507 13.2438933621 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7430947;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7430948-7430992%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7430948-7430992&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.623236473373 0.599365005328 1.01543920157 7334267 7334311 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7334266;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7430948-7430992%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7334267-7334311&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TCFHSATTAQSSVCTLPPPFTLSLPLVPPRSFVPPQPTNHQRPSTLIQTPTVLPTSK Same 517610 chr17:7430948-7430992+ 2410 2410 -127 0 708 7420340 7438334 1096 1096;1905;1920;2283;5350;13988;14787;48569;72692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7420340-7438334&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.9 15.4396 0.9922 -1.14262 16.58222 0.882694206783 1.01970846941 1355 1008 1008;1355;2074;2394;2819;5308;13112;27391;64992 -8.00633333333 0.7521 -21.38104 13.3747066667 0.0588544606628 0.856553125551 17053 3602 3602;3907;7062;7245;8899;17053;24490;30052;59755 0.0 0.553430783516 chr3:195778790-195791497- ENST00000575310.1 NCintron protein-coding gene protein-coding gene ENSG00000283439 2285 531028 chr19:37829616-37829672- NoOverlap chr19 37829616 37829672 - 5.79758954048 19 0.787899595636 -3.73538948674 9.53297902722 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37829615;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37829616-37829672-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37829616-37829672&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.374802682034 0.599279528033 1.05418735712 38320256 38320312 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38320255;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37829616-37829672-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38320256-38320312&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGNGPLLLMAIPNSVIRARPWPEGTPVFLCCDLYSSYQVK Same 532495 chr19:37829616-37829672- 2263 2263 22 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.59649122807 0.431818181818 17.3076526316 0.9395 -4.44762105263 21.7552736842 0.89516355766 0.966839559594 1309 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 24.7698736842 0.4521 -1.91671578947 26.6865894737 0.865059546398 1.05379740895 2254 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.169460954831 chr19:37892578-37895456- 0.495260578666 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 2288 476796 chr10:14843424-14843504+ NoOverlap chr10 14843424 14843504 + 4.68573692772 27 0.939926361091 -2.28286308933 6.96860001705 ENST00000437161.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;14843423;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14843424-14843504%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A14843424-14843504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.475076982959 0.598961769593 1.03560328394 14885423 14885503 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;14885422;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14843424-14843504%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A14885423-14885503&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAVAPCQSSPMARLGVSGEPSPCTSTNR Same 478690 chr10:14843424-14843504+ 2450 2450 -162 0 39 14838293 14843891 43 43;332;2288;5649;18768 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:14838293-14843891&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.691358024691 0.2109375 4.15513333333 0.9774 -3.87472592593 8.02985925926 0.535523207271 0.999779687 2902 141 141;644;2902;7592;7784 4.37237777778 0.3773 -4.2468 8.61917777778 0.302303164593 0.793497333485 4606 1661 1661;2005;4606;11944;25459 0.0 0.0958962276829 chr15:42283611-42284041+ ENST00000437161.6,ENST00000378372.7 CDS,CDSintron protein-coding gene protein-coding gene ENSG00000284024 2289 520746 chr17:28717643-28717708- NoOverlap chr17 28717643 28717708 - 8.89738662947 22 0.76548062451 5.09388626164 3.80350036784 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;28717642;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A28717643-28717708-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A28717643-28717708&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.763696580821 0.598880100045 0.717851462742 27044661 27044726 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;27044660;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A28717643-28717708-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A27044661-27044726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVMVGQPQPRDDVGSPRPRVIVGTIRPR Same 522160 chr17:28717643-28717708- 2251 2251 38 0 204 28716900 28729058 248 248;2079;2289;12048 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:28716900-28729058&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.651515151515 0.860869565217 13.6009136364 0.8423 5.75653636364 7.84437727273 0.70290965861 0.924639880393 2080 513 513;2080;5830;56808 5.43312272727 0.5683 2.83806363636 2.59505909091 0.177822790955 0.511465508994 6873 2890 2890;6873;48672;65906 0.0 0.128579987966 chr4:174975526-174977988+ ENST00000395242.6,ENST00000483554.1,ENST00000430132.6,ENST00000301043.10,ENST00000482688.5 UTR5,NC,CDSintron,UTR5intron,NCintron protein-coding gene protein-coding gene ENSG00000109113 2293 491312 chr12:49030371-49030424+ NoOverlap chr12 49030371 49030424 + 11.1365834077 18 0.923697261006 7.94691686663 3.18966654109 ENST00000301067.11 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;49030370;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49030371-49030424%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A49030371-49030424&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.747350300322 0.598363871803 0.565920087249 49424154 49424207 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49424153;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49030371-49030424%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49424154-49424207&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WGDAIHHLLLHRWGWGGGQRRGWCRR Same 493289 chr12:49030371-49030424+ 2300 2300 -7 0 27 49020566 49033910 27 27;1869;2293;3141;4665;5179;14171;29832;59889;70464 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:49020566-49033910&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.759259259259 0.870967741935 -0.0168611111111 0.9956 0.113155555556 -0.130016666667 -0.0124212196151 0.285251832798 48787 391 391;2014;2802;4299;4455;6825;32787;42176;48473;48787 -39.3710666667 0.9917 -51.1617777778 11.7907111111 0.023474828021 0.245355727658 25843 2210 2210;2935;3946;7899;19234;24986;25843;31483;36637;57651 0.0 0.0 ENST00000301067.11,ENST00000552391.1 AntiCDS,AntiNC not annotated potentially spurious 2301 579653 chr7:142308999-142309043+ NoOverlap chr7 142308999 142309043 + 10.2196932753 15 0.896894789044 0.61435353756 9.60533973773 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142308998;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142308999-142309043%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142308999-142309043&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.588785709351 0.597201415271 1.03231020461 142008822 142008866 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142008821;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142308999-142309043%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142008822-142008866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AHLNLHINSLELGDSAVYFCASSQDTALQSHCIPVHKPPGSAR None NA NA 0 235 142308759 142313661 301 301;580;755;2301;6419;13330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142308759-142313661&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.0 14.7039866667 0.9001 3.16306 11.5409266667 0.654072644446 1.00422748661 2287 920 920;2287;2398;2499;3331;6365 23.43616 0.5397 -1.40772 24.84388 0.865246447928 1.04134888806 2253 1287 1287;2253;2669;3117;3138;4592 0.0 0.0 ENST00000390387.3 NC immunoglobulin segment overlaps an immunoglobulin region 2303 483128 chr10:132810440-132810490- NoOverlap chr10 132810440 132810490 - 12.3569412792 17 0.604394598306 0.354176598437 12.0027646808 ENST00000368586.9 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;132810439;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A132810440-132810490-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A132810440-132810490&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.585157783891 0.597017413673 1.02708348756 134623944 134623994 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;134623943;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A132810440-132810490-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A134623944-134623994&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDVSPLDLLAVGKPIGETVRLLQK Same 485058 chr10:132810440-132810490- 2431 2431 -128 0 126 132808795 132810723 153 153;2303;3525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:132808795-132810723&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.529411764706 0.579545454545 20.302 0.8543 0.0729823529412 20.2290176471 0.74037140419 0.988083921284 1929 54 54;1929;2271 20.6078705882 0.4836 -5.80196470588 26.4098352941 0.83268363514 1.05523210616 2379 58 58;2379;2936 0.0 0.057177958131 chr17:4539902-4539967- ENST00000368586.9 CDS coding exon(s) CFAP46 multiple cassette exons 2305 560224 chr4:146224449-146224520+ NoOverlap chr4 146224449 146224520 + 5.49864580451 24 0.724453854175 -2.20704999566 7.70569580017 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;146224448;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A146224449-146224520%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A146224449-146224520&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.430130383654 0.596768551461 1.04675059678 147145601 147145672 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;147145600;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A146224449-146224520%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A147145601-147145672&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELLCSFSFPSLSVVQSYFVYWARIESSVVSQQTHSSAHSDDR Same 561215 chr4:146224449-146224520+ 2347 2347 -42 0 242 146217013 146230318 309 309;516;989;2305;2338 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:146217013-146230318&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.402777777778 0.0 6.085375 0.9411 -5.09035 11.175725 0.66451562643 1.06692715347 2226 664 664;700;2226;4904;5079 19.929375 0.7887 -4.50082083333 24.4301958333 0.995706333682 1.05687321317 1179 442 442;762;1179;1402;2183 0.0 0.0 protein-coding gene protein-coding gene ENSG00000250673 2307 518076 chr17:48600552-48600614+ NoOverlap chr17 48600552 48600614 + 8.07804280236 21 0.904481429407 3.50399994531 4.57404285705 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48600551;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48600552-48600614%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48600552-48600614&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.737551613228 0.596722291503 0.800497883732 46677914 46677976 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46677913;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48600552-48600614%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46677914-46677976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SYLSPEVFMSVYSSDPFVWEKEQAGRAGQRPTPFWSQIPTNLSVVR Same 519477 chr17:48600552-48600614+ 2265 2265 42 0 1550 48541764 48633940 Best 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539682539683 0.99604743083 5.11639047619 0.997 -3.43052857143 8.54691904762 0.51889408611 0.985659937154 3016 Best 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 4.59674285714 0.3834 -4.65727142857 9.25401428571 0.255617956286 0.781421506903 5134 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000225648.3,ENST00000490419.1 NCintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 2309 582005 chr7:100889458-100889508- NoOverlap chr7 100889458 100889508 - 7.3268411028 17 0.671209367244 -5.57042362409 12.8972647269 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100889457;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100889458-100889508-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100889458-100889508&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.359736054998 0.595904974597 0.99274064866 100487079 100487129 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100487078;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100889458-100889508-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100487079-100487129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EDAVPGLGPPLPPTALEPLRDVHVGLSPPSR Same 582965 chr7:100889458-100889508- 2310 2310 -1 0 402 100882699 100896048 564 564;2139;2309;3733;10134;33066;33794;47001;47408;61791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100882699-100896048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.78431372549 0.782608695652 7.35119411765 0.9333 -5.25913529412 12.6103294118 0.560907608596 1.05427615254 2762 1085 1085;2762;12277;14242;15089;33604;35393;48431;52932;53395 7.67395294118 0.6369 -11.2663470588 18.9403 0.598037736509 1.02793020941 3172 1829 1829;3172;9515;15507;19629;23787;40273;49567;60478;62610 0.0 0.00647888096466 chr17:9656403-9656534+ ENST00000388761.3 UTR5 pseudo-exon UFSP1 is a retrogene that has apparently evolved to use a downstream ATG, so this is 5' pseudo-exon sequence 2312 505806 chr14:105641761-105641898- NoOverlap chr14 105641761 105641898 - 6.00268262771 46 0.412979124995 0.631260903957 5.37142172375 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105641760;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105641761-105641898-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105641761-105641898&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.362167704733 0.595533278362 1.0101083286 106108098 106108235 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106108097;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105641761-105641898-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106108098-106108235&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PPTSCPELQLEESCAEAQDGELDGLWTTITIFITLFLLSVCYSATITFFKVGRTLSPAVLDIVPHAVTHCPHAVPTCP Same 507632 chr14:105641761-105641898- 2580 2580 -268 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.601449275362 0.560975609756 10.2516 0.5625 2.73643043478 7.51516956522 0.756981439028 1.01537505498 1834 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 12.2842478261 0.4276 -2.25055217391 14.5348 0.9136680321 1.00213595162 2038 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.0171189078036 chr19:1399524-1399587- immunoglobulin segment overlaps an immunoglobulin region 2318 485948 chr11:111463318-111463368+ NoOverlap chr11 111463318 111463368 + 10.6237410412 17 0.941537301577 5.36107647244 5.26266456877 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111463317;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111463318-111463368%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111463318-111463368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.689163287441 0.594456999644 0.792626296899 111334043 111334093 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111334042;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111463318-111463368%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111334043-111334093&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MIASRTPVCLENYPGDIFYGTVTTSLR Same 487906 chr11:111463318-111463368+ 2270 2270 48 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.43137254902 0.0 9.72314705882 0.977 3.62385882353 6.09928823529 0.550934586485 0.786138413729 2813 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 10.5924235294 0.3486 2.02561764706 8.56680588235 0.275344941692 0.709719754794 4888 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 pseudogene unitary pseudogene ENSG00000255093 2319 581039 chr7:38249448-38249492- NoOverlap chr7 38249448 38249492 - 12.7236933549 15 0.788693064775 -3.59614656965 16.3198399246 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;38249447;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38249448-38249492-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A38249448-38249492&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.626071126328 0.594444176582 0.989749424047 38289049 38289093 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;38289048;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38249448-38249492-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A38289049-38289093&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGTYLCLLEKFFPDIIK None NA NA 0 578 38240099 38265655 880 880;946;1212;1353;2319;3451;3622;4048;8280;41779;49225 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:38240099-38265655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.311111111111 0.0 20.9822933333 0.9355 -4.77544 25.7577333333 0.770346896588 0.969767988755 1788 1335 1335;1528;1788;1910;2091;2312;3177;3446;5221;5413;7771 26.06138 0.4075 -7.29816666667 33.3595466667 0.663891717947 1.03701531378 2952 2500 2500;2518;2952;3009;3184;3667;3896;4112;4120;5226;6124 0.0 0.0 ENST00000436911.6,ENST00000610516.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 2323 559343 chr4:82290504-82290551+ NoOverlap chr4 82290504 82290551 + 6.40143120289 16 0.840171282521 -4.19356876612 10.594999969 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;82290503;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A82290504-82290551%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A82290504-82290551&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.352063052721 0.593736332102 1.04477018398 83211657 83211704 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;83211656;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A82290504-82290551%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A83211657-83211704&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAVAKVLRLVLLRAEPK Same 560328 chr4:82290504-82290551+ 2274 2274 49 0 540 82285065 82295757 819 819;2323;4757;63026 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:82285065-82295757&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4375 0.0 10.08851875 0.9323 -3.55556875 13.6440875 0.644483684036 1.04766891842 2332 1977 1977;2332;2366;32061 10.27645625 0.3808 -3.99093125 14.2673875 0.395144022494 0.902552639399 3988 3193 3193;3988;4126;35871 0.0 0.0 pseudogene unitary pseudogene ENSG00000284516 2328 493928 chr12:132120411-132120500+ NoOverlap chr12 132120411 132120500 + 7.83478335838 30 0.360573230589 -1.83711670736 9.67190006574 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132120410;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132120411-132120500%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132120411-132120500&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.259670877733 0.593008117553 1.03851448681 132604956 132605045 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132604955;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132120411-132120500%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132604956-132605045&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WAAPVFQENQVHQRIAELRKAGLWSQRRLLKLQEAHDPSPTGTICWR Same 495919 chr12:132120411-132120500+ 2675 2675 -347 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.588888888889 0.409090909091 22.35988 0.8602 1.8906 20.46928 0.986653234443 0.977603445443 860 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 49.4763233333 0.9441 6.87637 42.5999533333 0.967945785965 0.998364791429 1603 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.866962202154 chr12:131987705-131987890+ 0.765989322516 chr12:131987705-131987890+ ENST00000332441.7 NC redundant PhyloCSF signals are accounted for elsewhere on the list 2331 539837 chr2:110028558-110028743- NoOverlap chr2 110028558 110028743 - 3.99413226737 62 0.506017469119 -0.983298445301 4.97743071267 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110028557;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110028558-110028743-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110028558-110028743&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.332700538278 0.592704609448 1.01127017394 110786135 110786320 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110786134;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110028558-110028743-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110786135-110786320&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QTSDLNWSPHLVLVPGHKPPPALALSAGTGVCTPHLASFLPSGHSGQGGPCPRGHFCPRGTSLPQPCPAGSYSYLTGQASCFPCPTGYYCPENVTNYSRHPCPAGFYCPEVSA Same 541197 chr2:110028558-110028743- 2398 2398 -67 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.682795698925 0.260504201681 11.3604806452 0.7994 0.114270967742 11.2462096774 1.05698812137 1.03926750942 183 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 33.7769854839 0.8704 3.7825483871 29.9944370968 0.96510957057 1.01500440789 1630 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 2333 561218 chr4:17874904-17875014- NoOverlap chr4 17874904 17875014 - 4.06918112652 37 0.945506321153 -1.48353775927 5.55271888578 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17874903;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17874904-17875014-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17874904-17875014&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.523353962065 0.592477362526 1.00136286769 17876527 17876637 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17876526;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17874904-17875014-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17876527-17876637&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MIATVPLRHSIRDRKPSLHFLHSLASSSSLIYRNALLHKSYK Same 562209 chr4:17874904-17875014- 2472 2472 -139 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.37 4.45329189189 0.9987 -3.82418108108 8.27747297297 0.713931737339 1.0491997847 2025 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 27.4657027027 0.9236 1.42891621622 26.0367864865 1.024468063 1.04589428542 706 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 2335 514274 chr16:53044015-53044083- NoOverlap chr16 53044015 53044083 - 3.32385654035 23 0.840550518973 -6.08909151606 9.41294805641 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;53044014;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A53044015-53044083-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A53044015-53044083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0895495635617 0.592448623728 1.05609192955 53077927 53077995 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;53077926;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A53044015-53044083-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A53077927-53077995&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPGLETGTQAADCKDAPLKDGTPEPK Same 515926 chr16:53044015-53044083- 2314 2314 21 0 1568 53044015 53055208 Best 2335 2335;26896;31541 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:53044015-53055208&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.652173913043 0.272727272727 3.51632173913 0.9971 -12.3444913043 15.8608130435 0.706637574952 1.02878290838 2057 Best 2057 2057;6671;6830 4.29963043478 0.4165 -15.6849869565 19.9846173913 0.581645037567 1.07526103535 3222 Best 3222 3222;10771;15192 0.0 0.0 ENST00000619363.1,ENST00000562178.1 NC,NCintron protein-coding gene protein coding gene ENSG00000277639 2338 560220 chr4:146217013-146217075+ NoOverlap chr4 146217013 146217075 + 6.10409045787 21 0.763892794472 -2.04088558789 8.14497604576 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;146217012;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A146217013-146217075%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A146217013-146217075&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.466299536788 0.59226449708 1.04734328681 147138165 147138227 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;147138164;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A146217013-146217075%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A147138165-147138227&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MQAALVGWACTTLCLASCSSAFSHGASTVACDDMQPKHIQAQPQHQDSHHITIHTHR Same 561211 chr4:146217013-146217075+ 2344 2344 -6 0 242 146217013 146230318 309 309;516;989;2305;2338 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:146217013-146230318&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.2 5.55439047619 0.8336 -1.35394285714 6.90833333333 0.336138313386 0.895134452833 4904 664 664;700;2226;4904;5079 21.4160857143 0.655 7.76058571429 13.6555 0.88332727261 0.876245247276 2183 442 442;762;1179;1402;2183 0.0 0.0 protein-coding gene protein-coding gene ENSG00000250673 2344 537031 chr2:227617456-227617809+ NoOverlap chr2 227617456 227617809 + 3.92794746628 118 0.733317944998 1.7713805511 2.15656691518 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227617455;354;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227617456-227617809%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227617456-227617809&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.745391710757 0.591732853415 0.734911480598 228482172 228482525 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228482171;354;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227617456-227617809%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228482172-228482525&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EASDLLTSPESSLLTSPESSTDTMGCCGCGSCGGCGGRCGGGCGGGCSGGCGGGCGGGCGGGCGSCTTCRCYRVGCCSSCCPCCRGCCGGCCSTPVICCCRRTCGSCGCGYGKGCCQQKCCCQKQCCC Same 538401 chr2:227617456-227617809+ 1462 1462 882 0 561 227598893 227617809 853 853;1652;2344;9463;10241;31196;35213 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227598893-227617809&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.649717514124 0.332290362954 9.27852542373 0.8712 2.12597966102 7.15254576271 1.00500087645 0.99197364952 692 Best 692 692;818;1157;2569;3216;3360;61544 7.3475720339 0.5579 -1.85160423729 9.19917627119 0.755819466717 0.869409377217 2617 Best 2617 2617;3136;3286;3380;3692;5489;30629 0.0 0.140600538375 chr11:1697246-1697635+ ENST00000413096.1,ENST00000264387.8 AntiNC,AntiCDSintron protein-coding gene (shared cluster) protein-coding genes ENSG00000284643, ENSG00000284622, ENSG00000284704, ENSG00000284631 2345 570125 chr5:177632135-177632218- NoOverlap chr5 177632135 177632218 - 5.70156428431 28 0.588563908053 -1.61232500523 7.31388928954 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;177632134;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177632135-177632218-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A177632135-177632218&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.359031894396 0.591575358725 1.04588758871 177059136 177059219 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;177059135;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177632135-177632218-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A177059136-177059219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPLPCPQQDVSRPPQALPCPLRASPCPPRALSCPSQTMQCKLPALTQPPQEVPCPR Same 571143 chr5:177632135-177632218- 2510 2510 -165 0 413 177631373 177632741 581 581;682;928;2345;9048;9086 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:177631373-177632741&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.547619047619 0.195804195804 6.14461071429 0.625 1.832125 4.31248571429 0.236440262624 0.755021400921 7404 2235 2235;3960;4414;7404;13259;17105 2.39662857143 0.3716 -3.06420357143 5.46083214286 0.17001740286 0.671391342433 7150 2652 2652;4964;5610;7150;10642;13371 1.46621121595 chr5:176289654-176290955+ 1.15938839946 chr5:176289654-176290955+ ENST00000515045.1,ENST00000500444.2 NC,NCintron pseudogene extension SUMO interacting motifs containing 1 (SIMC1) pseudogene significantly rebuilt (ENSG00000246596) 2348 548686 chr22:38506295-38506363+ NoOverlap chr22 38506295 38506363 + 5.60560864469 23 0.912872975277 -1.44317398382 7.04878262852 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;38506294;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A38506295-38506363%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A38506295-38506363&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.53024035328 0.591178767086 1.02138274203 38902300 38902368 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;38902299;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A38506295-38506363%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A38902300-38902368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLPSQRLHKMAAAAESAPT*RCVRRRRYVNSASE Same 550056 chr22:38506295-38506363+ 2387 2387 -39 8 613 38506019 38506525 940 940;2348;12200;25104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:38506019-38506525&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.623188405797 1.49350649351 4.76193913043 0.9256 -0.192413043478 4.95435217391 0.328285991048 0.770492760626 5045 Best 5045 5045;8138;18258;30760 1.7053173913 0.5167 -6.43115652174 8.13647391304 0.236032657764 0.752986458541 5447 Best 5447 5447;9812;16286;35577 0.0 0.0 ENST00000396821.7,ENST00000479734.1,ENST00000432525.5 AntiUTR5,AntiNC,AntiNCintron not annotated putative regulatory region 2349 530411 chr19:18250363-18250440- NoOverlap chr19 18250363 18250440 - 7.15098857536 26 0.596398870832 0.852546169208 6.29844240615 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;18250362;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18250363-18250440-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A18250363-18250440&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.503694461827 0.591164735549 0.991443160011 18361173 18361250 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;18361172;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18250363-18250440-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A18361173-18361250&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELHRNPSVVVVVCLLVSLLLIGSVVMAVR Same 531874 chr19:18250363-18250440- 2479 2479 -130 0 692 18236900 18263956 1071 1071;2349;2964;6293;18798;31506 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:18236900-18263956&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.551282051282 0.6 16.0154346154 0.8788 -0.117861538462 16.1332961538 0.953078711795 1.01595870234 1074 Best 1074 1074;2068;2444;2621;2710;8481 20.3826692308 0.3605 2.03458076923 18.3480884615 0.877032121979 1.00974389739 2208 Best 2208 2208;2924;3816;3839;4374;14268 0.0 0.0 ENST00000355502.7,ENST00000596647.1 UTR5,NC protein-coding gene protein-coding gene ENSG00000284797; found after looking at high-scoring intergenic PCCRs 2355 489044 chr11:76719640-76719792- NoOverlap chr11 76719640 76719792 - 3.70048231179 51 0.469296005577 -2.70991569641 6.41039800819 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;76719639;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76719640-76719792-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A76719640-76719792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.179234366761 0.590337330217 1.06428871178 76430684 76430836 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;76430683;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76719640-76719792-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A76430684-76430836&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDPATSGPSCGAVDALGGAGGLGDDHPAEPCAWAEGLVDGRLVFLPYDMLLFSLSYCNRSYLSLGTGGPLQEAYDAVLTISQESGPIDK Same 491033 chr11:76719640-76719792- 2538 2538 -183 0 85 76712306 76719866 98 98;1554;2355;2775;9069;9723;10637;30796 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:76712306-76719866&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.59477124183 0.223902439024 9.13758627451 0.9219 -6.26721764706 15.4048039216 1.05646155519 0.949717940486 186 88 88;186;1371;1479;2258;2338;2434;2689 33.2949176471 0.8539 -10.1585745098 43.4534921569 1.00681831387 0.930810451807 995 838 838;995;1128;1187;1347;1571;1780;2549 0.0 0.417990180827 chrX:109465142-109465443- pseudogene extension GUCY2EP extended [ENSG00000204529] 2356 548920 chr22:41971976-41972017+ NoOverlap chr22 41971976 41972017 + 5.6599572088 14 0.750633794374 -7.96153557301 13.6214927818 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;41971975;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41971976-41972017%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A41971976-41972017&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.129391834856 0.590292568855 0.975109100622 42367980 42368021 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;42367979;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41971976-41972017%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A42367980-42368021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSSPGSPPVTLVPGGRVHSEGPGNPGLTK Same 550292 chr22:41971976-41972017+ 2156 2156 200 0 449 41971511 41976889 643 643;1518;1625;1678;2356;48456;54626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:41971511-41976889&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.0 3.98862857143 0.989 -15.2153642857 19.2039928571 0.49226977605 0.973870565584 3195 797 797;1243;1705;1853;3195;37930;49782 0.23905 0.4182 -21.2388642857 21.4779142857 0.299342442874 1.06524578173 4636 2758 2758;2926;3000;4195;4636;26254;61260 0.0 0.0350513623664 chr5:176577637-176577798+ coding exon(s) SEPT3 alternative first exon 2361 492183 chr12:57624734-57624781+ NoOverlap chr12 57624734 57624781 + 10.9547125623 16 0.857372968643 4.39430004731 6.56041251495 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;57624733;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57624734-57624781%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A57624734-57624781&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.655555731005 0.589822397236 0.88875750217 58018517 58018564 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;58018516;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57624734-57624781%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A58018517-58018564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLALGQAEGTELYRPLR Same 494164 chr12:57624734-57624781+ 2268 2268 93 0 115 57604808 57624781 137 137;276;887;2361;32008;57382;64750;68543 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:57604808-57624781&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.0 20.68845 0.9931 6.3083625 14.3800875 0.958987266897 1.00801053176 1040 192 192;198;227;1040;9332;22257;31301;59213 23.9021 0.5363 5.38323125 18.51886875 0.842729027181 0.955680143813 2339 667 667;1211;1268;2339;27890;29446;30873;52552 0.0 0.0 ENST00000474359.6,ENST00000320442.8,ENST00000440686.5,ENST00000553142.5 NC,CDSintron,NCintron,AntiNC coding exon(s) SLC26A10 alternative final exon 2369 722215 chr8:11808755-11808793+ Extension chr8 11808755 11808793 + 5.66125396123 13 0.746383318368 -8.99267672805 14.6539306893 chr8:11808755-11808901+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;11808754;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A11808755-11808793%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A11808755-11808793&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0834609368491 0.589219341709 0.956688699679 11666264 11666302 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;11666263;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A11808755-11808793%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A11666264-11666302&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPQSHSHSHSHSHSHSCSSTSPTAVCVVCPQDSLSSSLK Same 722816 chr8:11808755-11808793+ 2066 2066 303 0 253 11808518 11808793 327 327;2369 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:11808518-11808793&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.18181818182 16.4445 0.8606 -3.98135384615 20.4258538462 0.59354735218 0.978278674811 2576 327 327;2576 8.41662307692 0.6327 -16.9171615385 25.3337846154 0.629767665855 1.06921263319 3065 1107 1107;3065 0.0 0.0 ENST00000220584.8,ENST00000525954.5,ENST00000528812.5,ENST00000446331.6 ExtensionMid,NC,UTR5intron,NCintron coding exon(s) FDFT1 alternative first coding exon 2376 548971 chr22:42615270-42615341+ NoOverlap chr22 42615270 42615341 + 6.71226259321 24 0.975906004425 1.58569990844 5.12656268477 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;42615269;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A42615270-42615341%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A42615270-42615341&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.680821898138 0.588738461887 0.891763731081 43011276 43011347 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;43011275;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A42615270-42615341%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A43011276-43011347&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ITIRGDARILTANVRRIFERVKVALK Same 550343 chr22:42615270-42615341+ 2564 2564 -188 0 1596 42615270 42615341 Best 2376 2376 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:42615270-42615341&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.513888888889 1.5 4.40237083333 0.9402 -0.585070833333 4.98744166667 0.338740543888 0.781833532441 4858 Best 4858 4858 -4.24929583333 0.9791 -14.6042708333 10.354975 0.121052132958 0.834427411215 9758 Best 9758 9758 0.0 0.0 ENST00000362512.1 NC not annotated RNU12 snRNA 2383 495238 chr12:51206789-51206842- NoOverlap chr12 51206789 51206842 - 9.77948330177 18 0.932761967736 5.04488326278 4.73460003899 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;51206788;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51206789-51206842-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A51206789-51206842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.705876875778 0.588033104593 0.764434959939 51600573 51600626 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;51600572;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51206789-51206842-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A51600573-51600626&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVTMDPGAGSETSLTVNEQVSSGVGSGGVR Same 497235 chr12:51206789-51206842- 2337 2337 46 0 215 51196844 51218124 265 265;283;557;693;1092;2383;53800;58134;68865;69357 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:51196844-51218124&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.244343891403 12.3909166667 0.9776 7.0639 5.32701666667 0.663737497014 0.721236820411 2229 69 69;438;866;867;1487;2229;24410;46155;50649;71456 18.5762944444 0.5838 9.81119444444 8.7651 0.627235396877 0.697550040638 3071 172 172;288;697;1392;1579;3071;9854;33434;34785;72898 0.0 0.0 ENST00000389243.8,ENST00000546685.5,ENST00000549309.5 UTR5,NC,NCintron coding exon(s) POU6F1 first coding exons 2389 567882 chr5:78360504-78360617- NoOverlap chr5 78360504 78360617 - 8.34487641328 38 0.767114800047 8.0932499684 0.251626444882 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;78360503;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A78360504-78360617-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A78360504-78360617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 1.01998075551 0.587036098629 0.406214385517 77656328 77656441 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;77656327;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A78360504-78360617-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A77656328-77656441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGRRPPARSRRRRRADPGAARGPPSRPRH*ACPVRRAPGR Same 568886 chr5:78360504-78360617- 2494 2494 -105 8 1148 78360504 78360619 1744 1744;2389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:78360504-78360619&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.80701754386 1.04134615385 0.749560526316 0.7194 0.743484210526 0.00607631578947 -0.00858164260302 0.402149656769 46268 13432 13432;46268 -2.89481578947 0.3532 -4.47444210526 1.57962631579 0.0115258859845 0.536917520286 30116 5927 5927;30116 0.0 0.0 ENST00000421004.3,ENST00000621999.4,ENST00000614488.4 NC,AntiUTR5,AntiNC not annotated putative regulatory region 2401 574027 chr6:19804719-19804835- NoOverlap chr6 19804719 19804835 - 4.24853592041 39 0.817996646928 -0.623841129816 4.87237705023 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;19804718;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A19804719-19804835-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A19804719-19804835&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.561405225359 0.585862572174 0.959943028853 19804950 19805066 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;19804949;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A19804719-19804835-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A19804950-19805066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RHPFTEPASPAPLAPAGRSP*QRRRQPAQ*LPAGAAQPACALTR Same 575056 chr6:19804719-19804835- 2346 2346 55 18 1616 19804719 19804943 Best 2401 2401;18586 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:19804719-19804943&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.735042735043 0.880208333333 1.26092307692 0.8481 -2.81908461538 4.08000769231 0.19550551918 0.788288829527 8968 Best 8968 8968;42383 -1.13026153846 0.5321 -6.60226923077 5.47200769231 0.196848315202 0.712613005996 6334 Best 6334 6334;45182 0.0 0.0 ENST00000606628.1,ENST00000432171.2 NC,NCintron not annotated putative regulatory region 2403 582914 chr7:143645951-143646040- NoOverlap chr7 143645951 143646040 - 7.16709329834 30 0.515019455253 1.32155987024 5.84553342809 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143645950;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143645951-143646040-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143645951-143646040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.448228064313 0.585774017819 0.983631573255 143343044 143343133 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143343043;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143645951-143646040-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143343044-143343133&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLSGNNDCWVSTGLYLLEGQNAEVSLSEAAASAGLR Same 583843 chr7:143645951-143646040- 2578 2578 -175 0 72 143639739 143647639 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.566666666667 0.139751552795 18.7901033333 0.9619 8.14867666667 10.6414266667 1.03633703982 1.04040772052 401 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 24.23755 0.5358 5.99258666667 18.2449633333 1.07183425788 1.00926925464 160 Best 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.971586347302 chr7:143721281-143721378+ 0.929338348293 chr7:143721281-143721378+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 2404 485949 chr11:111463396-111463428+ NoOverlap chr11 111463396 111463428 + 12.0226000439 11 0.943495841917 -5.11779980565 17.1403998496 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111463395;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111463396-111463428%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111463396-111463428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.421195600862 0.585758904009 0.976362848838 111334121 111334153 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111334120;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111463396-111463428%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111334121-111334153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AATCPLLIPFLK Same 487907 chr11:111463396-111463428+ 2230 2230 174 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606060606061 0.0 18.7942727273 0.9792 -11.8596 30.6538727273 0.579161274074 0.98499983847 2661 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 17.7232 0.3493 -13.6882818182 31.4114818182 0.405212645837 1.04245444504 3933 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 pseudogene unitary pseudogene ENSG00000255093 2405 491557 chr12:52266960-52267085+ NoOverlap chr12 52266960 52267085 + 5.75817379355 42 0.472531944036 0.427123817227 5.33104997633 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52266959;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52266960-52267085%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52266960-52267085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.376717169628 0.585719057801 0.998764230817 52660744 52660869 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52660743;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52266960-52267085%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52660744-52660869&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGISHTEPQEHLCFPHFGEMKATVIWHGETVGCTKEEIKELTHMIQRLMAKVENAKCQVWGICAQGQR Same 493535 chr12:52266960-52267085+ 2625 2625 -220 0 489 52264108 52277736 722 722;766;1062;1070;1290;2405;17351 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52264108-52277736&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.587301587302 0.201923076923 5.49380952381 0.9507 -4.78532142857 10.2791309524 0.85402913547 1.087544167 1453 546 546;672;709;783;1453;1608;1712 38.464752381 0.9063 -4.90950238095 43.3742547619 0.994111895831 0.946853491249 1208 783 783;839;1030;1208;1231;1471;2431 0.416903963002 chr12:52316468-52316593- 0.369943301247 chr12:52287596-52287721- ENST00000553310.6 UTR5intron pseudogene keratin family pseudogene (ENSG00000284883) 2413 477238 chr10:38310049-38310231+ NoOverlap chr10 38310049 38310231 + 3.80757541148 61 0.578896772717 -0.983754125042 4.79132953653 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;38310048;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38310049-38310231%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A38310049-38310231&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.364921683989 0.584864214951 0.998905941534 38598977 38599159 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;38598976;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38310049-38310231%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A38598977-38599159&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IALVENIPEGLNYSENAPFHLSLFQGWMNLLNMAKKSVDIVSSHWDLNHTHPSACQVSYILCVCDDFTYVHFPLLSILLLHSSNSSSSILVYAHPEYMYIITFM Same 479131 chr10:38310049-38310231+ 2483 2483 -70 0 1621 38310049 38310231 Best 2413 2413 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:38310049-38310231&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.426229508197 0.125600549073 7.85117868852 0.9207 1.74349016393 6.10768852459 0.874500779783 0.984992148774 1381 Best 1381 1381 11.514542623 0.5859 0.35446557377 11.1600770492 0.83869793192 0.933067423142 2354 Best 2354 2354 0.915551901729 chr1:242288362-242288530- 0.932765533558 chr1:242288362-242288530- ENST00000450980.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 2422 577695 chr7:27156656-27156703+ NoOverlap chr7 27156656 27156703 + 11.8983623683 16 0.880796520943 7.08895004541 4.80941232294 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27156655;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27156656-27156703%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27156656-27156703&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.679148878876 0.583688229224 0.704499132906 27196275 27196322 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27196274;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27156656-27156703%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27196275-27196322&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FTPNPIFFWTELAAARDRPHDRLR Same 578734 chr7:27156656-27156703+ 2339 2339 83 0 1628 27130527 27185948 Best 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.729166666667 1.14285714286 5.64769375 1.0 2.1625125 3.48518125 0.267581045982 0.574615098851 6419 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -3.512025 0.8907 -9.89278125 6.38075625 0.0276893204328 0.624533702724 24449 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000519842.1 AntiUTR5 not annotated putative regulatory region 2425 531766 chr19:49020417-49020515- NoOverlap chr19 49020417 49020515 - 3.92420313942 33 0.642206454566 -3.26610607631 7.19030921573 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49020416;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49020417-49020515-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49020417-49020515&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.240902060052 0.583390354614 1.05907867658 49523674 49523772 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49523673;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49020417-49020515-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49523674-49523772&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGGGTMASGTLAPGCRISATEVPGSRPNCHLTSSYFSHR Same 533241 chr19:49020417-49020515- 2586 2586 -161 0 33 49017965 49020515 34 34;193;1195;1825;2425;7512;24256 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49017965-49020515&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.606060606061 0.349001175088 5.46468787879 0.9642 -3.16570909091 8.6303969697 0.713601845255 1.04531023001 2029 18 18;246;307;1538;2029;2679;3404 3.46613333333 0.378 -5.69036363636 9.1564969697 0.349895246118 0.842046014777 4229 76 76;2096;2562;2564;4203;4229;5297 0.0 0.0538419825221 chr15:89797575-89797722- protein-coding gene protein-coding gene ENSG00000268655 2427 505807 chr14:105643245-105643526- NoOverlap chr14 105643245 105643526 - 4.40424893392 94 0.284945838589 -3.35239886429 7.75664779821 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105643244;282;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105643245-105643526-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105643245-105643526&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.289873651497 0.58287981368 1.06074854248 106109582 106109863 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106109581;282;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105643245-105643526-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106109582-106109863&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGPPSALGVTAVPTSVPTGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDISVEWESNGQPENNYKTTPPMLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQK None NA NA 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.602836879433 0.393799748638 12.3099670213 0.5643 -6.18718191489 18.4971489362 0.971048339672 0.970988109739 958 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 11.1541351064 0.4102 -15.9118489362 27.0659840426 0.870261779313 1.09386308501 2236 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.162122653616 chr22:22895375-22895694+ ENST00000390545.2 NC immunoglobulin segment overlaps an immunoglobulin region 2432 543110 chr20:31723960-31724001+ NoOverlap chr20 31723960 31724001 + 12.8600143024 14 0.942897470272 3.06584993431 9.79416436808 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;31723959;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A31723960-31724001%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A31723960-31724001&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.599309405937 0.582065645333 0.989757201949 30311763 30311804 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;30311762;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A31723960-31724001%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A30311763-30311804&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QGNLQAQSLPVPRQRARARDAKGVRALSDWHQDR Same 544499 chr20:31723960-31724001+ 2213 2213 219 0 1635 31722888 31724001 Best 2432 2432;20584;65424 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:31722888-31724001&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.761904761905 1.48235294118 1.63610714286 0.9983 -3.81752857143 5.45363571429 0.100970687884 0.727263051999 15736 Best 15736 15736;50767;69771 0.102021428571 0.3553 -4.51793571429 4.61995714286 0.0149903377899 0.540233608399 28732 Best 28732 28732;59986;60988 0.0 0.0 ENST00000420488.5 AntiUTR5 not annotated putative regulatory region 2438 539881 chr2:110407957-110408025- NoOverlap chr2 110407957 110408025 - 9.12320432974 23 0.495522140509 1.90506091325 7.21814341649 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110407956;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110407957-110408025-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110407957-110408025&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.450538121562 0.581483705832 1.01350230892 111165534 111165602 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111165533;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110407957-110408025-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111165534-111165602&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSSPPLTWSPLLCLNGEQDLLLAAAYVLDAQYNRNVPFETHLRPSGN Same 541241 chr2:110407957-110408025- 2609 2609 -171 0 1194 110397399 110408025 1806 1806;2085;2438;3107;4591;8217;15827;15899 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110397399-110408025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.463768115942 0.0 19.8706956522 0.734 9.78205217391 10.0886434783 0.760354590621 0.985263983158 1821 48 48;279;480;726;1001;1821;1905;2030 44.4072217391 0.7234 15.3678347826 29.0393869565 0.998415223903 1.0409231181 1131 350 350;364;877;881;1131;1304;1506;1758 0.0 0.0 ENST00000466329.1,ENST00000488671.1 NC,NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000184115) 2451 547258 chr21:8437053-8438792- NoOverlap chr21 8437053 8438792 - 0.84305585794 580 0.175027505702 0.75462516412 0.0884306938195 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8437052;1740;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437053-8438792-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8437053-8438792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.647094885131 0.580868200531 0.635147333134 153227 154966 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153226;1740;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437053-8438792-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153227-154966&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RAAAAAPPRASPSGLR**SFRRFTYGNLVTTFTSSR*SSSTVFSALRQGRGPTPAGPIRGPH*TIQSVVATGGVYKGQGLNQRKLMTRTYWEFLVHGE*LQSPIPITNGVQRVTRACRRRVGTR*ASQCSARAAPDI*GHHRPVIAQSRVAERHLSL*EVGGRRPLGGRVTS*HARVSFVIGINQTNRSTN*ERPCTTTHGIEKELSICQSCPCPGRVRFPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRNPKTLVSRKLPGGSWE*RRRIAGRHRLWSELRRYLIVFEPPTFVLD**KHSWQMLSLWSVLRRSKNFTSSGAIRMPPAVPLNHGLSSENQQNRTAVLFHYS*LRYPGGSGLL*TL*FFQSKRFGPRGTLS*EHRGGAERQGAGTGGGSPRGGPPARSQDPTTSFLTAATLIYAIGAGITAAAGTRLALQWILVKGFKVDSFQLQGLERVLYCYFSSLPPRVGSG*FARLLPSLDVVAVSQAPSPESNPDSPSPVVTMVGTATTIES**GRRSNGSSPPRGACDRPEVI*SHQSRRRPPPGRGRRGADRVGFDLINARIPPAKGVSARR Same 548661 chr21:8437053-8438792- 44836 44836 -42385 486 1651 8433673 8446534 Best 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.581609195402 1.08363656304 -3.29755241379 0.2986 -3.92851689655 0.630964482759 0.285333357172 0.463888890956 5980 Best 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -4.71873344828 0.231 -5.39759862069 0.678865172414 0.587209037715 0.544618590091 3205 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0152723785704 chr2:235670100-235671057+ ENST00000627981.1 NC not annotated SSU-rRNA_Hsa 2457 513470 chr16:20721387-20721656- NoOverlap chr16 20721387 20721656 - 4.78222339782 90 0.293995574884 -1.55874112507 6.3409645229 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20721386;270;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721387-20721656-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20721387-20721656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.341492086201 0.580468373999 1.05454779567 20732709 20732978 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20732708;270;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721387-20721656-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20732709-20732978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LWHDSSCPPTQEFQQIFILNPTPNSLPLVSLLLEAVGKSAKLSLHP*LPSVIEGATPVSALLCSSTTVVAGVFLLILFHSLIKSNLSI*TLTLCLRAITTLFTAICTLTQNDIKK Same 515117 chr16:20721387-20721656- 1826 1826 631 48 1174 20720997 20722053 1782 1782;2457;4589;12301;12422;13695;22010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20720997-20722053&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.433333333333 0.0912162162162 -1.18027222222 0.0126 -0.990146666667 -0.190125555556 -0.0197011947148 0.35775814377 53953 26036 26036;26102;32372;32727;36194;41718;53953 36.4955966667 0.6693 10.1912111111 26.3043855556 0.946048714697 1.03434715552 1845 937 937;1188;1352;1485;1530;1845;1949 0.0 0.87597587632 chrM:12337-14148+ ENST00000561584.5,ENST00000501740.6 AntiUTR5intron,AntiNCintron pseudogene mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene (ENSG00000283399) 2458 510857 chr16:20728163-20728216+ NoOverlap chr16 20728163 20728216 + 8.26309447818 18 0.641210379526 -2.44755569432 10.7106501725 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20728162;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20728163-20728216%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20728163-20728216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.444376844029 0.580334386063 1.04268949486 20739485 20739538 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20739484;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20728163-20728216%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20739485-20739538&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FVLSMGIICANQKGQKIKPGSMGK Same 512495 chr16:20728163-20728216+ 2610 2610 -152 0 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.388888888889 0.0 11.9593833333 0.9735 -3.56765 15.5270333333 0.840259760345 1.03124331342 1506 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 31.1752166667 0.6811 -5.06197777778 36.2371944444 1.04366987359 1.02187874717 421 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.872805580494 chr12:7323234-7323314+ 0.822782170046 chr12:7323234-7323314+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 2461 586298 chr8:30858750-30858791- NoOverlap chr8 30858750 30858791 - 12.7897929379 14 0.932600900282 3.04856445108 9.74122848681 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;30858749;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A30858750-30858791-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A30858750-30858791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.599389221402 0.580141682248 0.989719719349 30716266 30716307 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;30716265;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A30858750-30858791-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A30716266-30716307&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INQHEPVFIFQVYFYEYSVLSKPVDKPRQCLPYAVVTVK Same 587237 chr8:30858750-30858791- 2243 2243 218 0 38 30849192 30875103 41 41;442;759;1484;2461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:30849192-30875103&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.380952380952 0.0 12.2805142857 1.0 1.68610714286 10.5944071429 0.723320460738 0.986967482297 1996 108 108;522;666;1448;1996 23.2152785714 0.6583 3.58104285714 19.6342357143 0.892173814127 0.968038391989 2145 180 180;472;1139;2145;2387 0.0 0.0 ENST00000523186.5 NC coding exon(s) TEX15 5' extended 2464 588824 chr9:35307826-35307879+ NoOverlap chr9 35307826 35307879 + 5.85048330161 18 0.996200503548 -3.53283875767 9.38332205928 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35307825;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35307826-35307879%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35307826-35307879&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.335498888173 0.579528145084 1.05440322389 35307823 35307876 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35307822;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35307826-35307879%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35307823-35307876&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAETGLMSSFKKLSTLFEGSSEGKGSVLASDSK Same 589767 chr9:35307826-35307879+ 2896 2896 -432 0 5 35300167 35307879 5 5;669;1004;1082;1090;2464;3976;4603;5133;9301;65975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35300167-35307879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.425925925926 0.0 6.717 0.9966 -5.67562222222 12.3926222222 0.639203789448 1.05751585574 2357 565 565;1736;1846;2357;2445;2557;2989;3035;3218;3591;8325 18.3692111111 0.7098 -5.05622222222 23.4254333333 0.931641468364 1.04961102059 1934 420 420;802;1067;1389;1934;2365;2375;2403;2753;3466;5635 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron coding exon(s) UNC13B cassette exon 2469 485925 chr11:111451248-111451313+ NoOverlap chr11 111451248 111451313 + 7.35531364517 22 0.670271263794 0.438522718169 6.916790927 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111451247;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111451248-111451313%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111451248-111451313&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.53022078085 0.579126410413 1.00346458427 111321973 111322038 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111321972;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111451248-111451313%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111321973-111322038&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHFYNTLEQYDWRRFRALAEESQLYEQSLSLFLQQFQKPGIYVFR Same 487883 chr11:111451248-111451313+ 2556 2556 -87 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606060606061 0.495 7.57750909091 0.9716 -3.25048181818 10.8279909091 0.710554395945 1.05198769064 2042 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 22.7840909091 0.6697 -0.800313636364 23.5844045455 1.03029084852 1.04948213172 619 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000531009.1,ENST00000525890.1 NC,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 2470 527001 chr19:6400105-6400146+ NoOverlap chr19 6400105 6400146 + 8.37127849885 14 0.743597205419 -12.9340497915 21.3053282904 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;6400104;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6400105-6400146%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A6400105-6400146&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.378280337622 0.578815272474 1.05298461055 6400116 6400157 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;6400115;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6400105-6400146%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A6400116-6400157&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IHPLPSQGIIPDMVSDNMLSRPESR Same 528447 chr19:6400105-6400146+ 1767 1767 703 0 18 6396383 6424885 18 18;152;1552;1681;2470;11355;12316;12885;15770;20124;36825 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:6396383-6424885&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 12.1782928571 0.892 -18.8138857143 30.9921785714 0.502159208456 1.08363684872 3131 228 228;1347;1830;2200;3049;3131;9882;24431;37923;50538;67562 18.3006 0.5184 -19.6485214286 37.9491214286 0.74949504604 0.960670918665 2633 237 237;2087;2298;2594;2633;2795;14442;22727;50962;60088;60354 0.0 0.248642138904 chr9:127871823-127871939- ENST00000593563.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 2472 547162 chr21:8392843-8394579- NoOverlap chr21 8392843 8394579 - 0.845289460443 579 0.175026515515 0.748966254674 0.0963232057687 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8392842;1737;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392843-8394579-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8392843-8394579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.645022839745 0.578565617972 0.63379498817 153227 154966 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153226;1740;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392843-8394579-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153227-154966&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RAAAAPPRASPSGLR**SFRRFTYGNLVTTFTSSR*SSSTVFSALRQGRGPTPAGPIRGPH*TIQSVVATGGVYKGQGLNQRKLMTRTYWEFLVHGE*LQSPIPITNGVQRVTRACRRRVGTR*ASQCSARAAPDI*GHHRPVIAQSRVAERHLSL*EVGGRRPLGGRVTS*HARVSFVIGINQTNRSTN*ERPCTTTHGIEKELSICQSCPCPGRVRFPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRNPKTLVSRKLPGGSWE*RRRIAGRHRLWSELRRYLIVFEPPTFVLD**KHSWQMLSLWSVLRRSKNFTSSGAIRMPPAVPLNHGLSSENQQNRTAVLFHYS*LRYPGGSGLL*TL*FFQSKRFGPRGTLS*EHRGGAERQGAGTGGGSPRGGPPARSQDPTTSFLTAATLIYAIGAGITAAAGTRLALQWILVKGFKVDSFQLQGLERVLYCYFSSLPPRVGSG*FARLLPSLDVVAVSQAPSPESNPDSPSPVVTMVGTATTIES**GRRSNGSSPPRGACDRPEVI*SHQSRRRPPPGRGRRGADRVGFDLINARIPPAKGVSARR Same 548570 chr21:8392843-8394579- 43974 43974 -41502 485 1664 8391812 8402305 Best 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.580886586068 1.08150092212 -1.41427253886 0.25 -1.78042037997 0.366147841105 0.284435753091 0.460312644864 6004 Best 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -2.10507374784 0.1225 -2.74713264249 0.642058894646 0.574684842599 0.549208946652 3247 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0326419695877 chr20:2102768-2103365+ ENST00000625598.1,ENST00000623860.2 NC,AntiNCintron not annotated SSU-rRNA_Hsa 2473 483269 chr11:1108548-1108613+ NoOverlap chr11 1108548 1108613 + 8.65990459191 22 0.538200961318 1.09921821681 7.5606863751 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1108547;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1108548-1108613%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1108548-1108613&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.458426142325 0.578497719291 1.02479589878 1102456 1102521 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1102455;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1108548-1108613%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1102456-1102521&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WGGLGSPAGFVWCGVQPGSSVAVACLCAQGFELMEAPGECCKKCEQTHCIIK Same 485199 chr11:1108548-1108613+ 2631 2631 -158 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.560606060606 0.589285714286 23.9755545455 0.9434 4.78894545455 19.1866090909 0.976480781395 1.01197981285 923 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 26.4741181818 0.783 -7.62455909091 34.0986772727 1.04737924813 1.01365070386 367 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0701264120382 chr11:1259756-1259842+ 0.198765389964 chr11:1199087-1199185+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 2477 475501 chr1:204367798-204367854- NoOverlap chr1 204367798 204367854 - 9.4838000983 19 0.710795757992 3.70408947531 5.77971062299 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204367797;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204367798-204367854-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204367798-204367854&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.642546073929 0.578243544532 0.883395070962 204336926 204336982 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204336925;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204367798-204367854-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204336926-204336982&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FCFLTGLPKGWEVDSTQEGAVYFIK Same 477386 chr1:204367798-204367854- 2490 2490 -13 0 537 204359879 204378165 815 815;1426;2477;10157;27979;29433;67476 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204359879-204378165&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.526315789474 0.0 12.7101842105 0.9652 5.22517368421 7.48501052632 0.745318847163 0.883060836158 1894 683 683;986;1894;9248;41567;43122;51633 17.8944263158 0.5234 -0.187931578947 18.0823578947 0.818879309492 0.985900622487 2415 208 208;1881;2415;9734;19689;34362;42976 0.0 0.131673877302 chr11:17013989-17014046- ENST00000564627.1 NC not annotated putative regulatory region 2486 547259 chr21:8437130-8438866- NoOverlap chr21 8437130 8438866 - 0.860838850674 579 0.174292580281 0.823570979125 0.0372678715485 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8437129;1737;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437130-8438866-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8437130-8438866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.644670528184 0.577211457146 0.631874889268 153304 155040 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153303;1737;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437130-8438866-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153304-155040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSERTNGHAGPARARAASRWGGGCAEGSARRRRRRRGPRPPGSVNDPSAGSPTETLLRLLLPLDSQVRPSSQRSARAVGRPRRGRSEGLTKPSNR**RRAVCTKGRDLINASL*PALTGNSSFMGNNCNPRSPSRMGFNGLPAPAGVG*AHAEPVSVARVQPRTSKGITDLLLLNLGWLNATCPSKKLGDADRSGVA*LVSMPESRSLSELTRQIAPPTKNGHAPPPTESRKSYQSVNPVRVRAG*GFPC*VKLSRRLHSWWCPSVNSFKFQLCNHTPPGTQRLWFPGSCPAGHGNNAAASPVGIVYGRNYDGI*SSSNLRLSFLINENILGKCFRSGPSCAGPRISPLAAQYECPRPSLLIMASVPKTNKIEPRSYSIIPSCGIQAARACFEHSNFFKVNASGPAGHSAKSIEGAPRGKGRGRAVARLAADRPPAPKIQLRAF*LQQL*YTLLELELPRLLAPDLPSNGSSLKDLKWTHSNYRASKESCIVIFRHYLPGSGVGNLRACCLPWMW*PFLRLPLRNRTLIPRHPWSPW*ARRLPSKVDRADVRMGRRRHGGRAIGPRLSRVTKAAGARPPAGAGEGLTGLVLI Same 548662 chr21:8437130-8438866- 44289 44289 -41803 449 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.588370754174 1.1066879042 -3.06460759931 0.2954 -3.15084611399 0.0862385146805 0.284928006674 0.459149484576 5995 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -4.53145181347 0.2302 -4.93748825561 0.406036442142 0.589374521679 0.544786478589 3199 Best 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0153519225668 chr2:235670100-235671057+ ENST00000627981.1 NC not annotated SSU-rRNA_Hsa 2488 506373 chr15:40324014-40324514+ NoOverlap chr15 40324014 40324514 + 3.97222994449 167 0.504714809338 1.97745811118 1.9947718333 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;40324013;501;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40324014-40324514%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A40324014-40324514&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.71145825279 0.576637806239 0.822222610335 40616215 40616715 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;40616214;501;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40324014-40324514%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A40616215-40616715&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAGPPGTEGAGPPPAQSLQAARPPPAGAVEHRGKGRGPPMKERDAAPAERGKPATYTGDKKAKMAAKTNKKWVRLATVFAYVLSVSLAAIVLAVYYSLIWQPVGAGTSGGAAGPPPGGSNATGPSGTSGAAAAGPNTTGSSRREAPRDVPPLQAARPAPPEPPADSPPAGPLERPRGPDEDEEETAAAPGSR Same 508084 chr15:40324014-40324514+ 1672 1672 816 0 1677 40313687 40324514 Best 2488 2488;29639;48301;50245;50817;59923;62142;66647;67529;68396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:40313687-40324514&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.766467065868 0.978542169655 5.63810239521 0.6566 2.95648143713 2.68162095808 0.662907433296 0.823522671408 2234 Best 2234 2234;17663;29719;32124;51811;55466;56351;56933;64873;66727 7.44207784431 0.6719 -3.67654610778 11.1186239521 0.901636086677 0.923557883379 2097 Best 2097 2097;14593;22796;39510;43273;44464;48619;53899;64626;73766 0.000453414793897 chr19:47274920-47275348+ 0.151973033189 chr19:47274920-47275348+ not annotated putative regulatory region 2491 501992 chr14:72562452-72562505+ NoOverlap chr14 72562452 72562505 + 8.02124458551 18 0.760089180506 -0.126544382837 8.14778896835 ENST00000343854.10,ENST00000402788.6,ENST00000553525.5,ENST00000553530.5,ENST00000555571.5,ENST00000556437.5,ENST00000622468.4 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;72562451;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A72562452-72562505%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A72562452-72562505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.548202034506 0.576343590641 1.03017364324 73029160 73029213 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;73029159;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A72562452-72562505%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A73029160-73029213&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAGGQAPHGPDAVLLTVPTAGPGPGPADPTGR Same 503894 chr14:72562452-72562505+ 2509 2509 -18 0 600 72553290 72562586 923 923;2491;2641;13239 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:72553290-72562586&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 0.605042016807 14.5842222222 0.9118 3.67108888889 10.9131333333 0.753834954176 1.00986932261 1850 639 639;1850;5004;21038 16.4518611111 0.4296 1.63628888889 14.8155722222 0.62951437227 0.908154683147 3067 1893 1893;3067;7481;29220 0.0 0.0 ENST00000343854.10,ENST00000554300.1,ENST00000554782.1,ENST00000555303.1 CDS,NC,CDSintron,AntiNCintron coding exon(s) RGS6 cassette exon leading to alternative frame final coding exon 2492 490632 chr12:9517687-9517809+ NoOverlap chr12 9517687 9517809 + 5.82438531482 41 0.441380606528 0.125417136564 5.69896817825 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9517686;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9517687-9517809%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9517687-9517809&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.32678760121 0.576251828938 1.01630475766 9670283 9670405 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9670282;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9517687-9517809%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9670283-9670405&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GIFSISIDINPELAPSVDMLVYSLHPGGEMVTDSTQFRIEKCFENQVGAK Same 492608 chr12:9517687-9517809+ 2743 2743 -251 0 666 9480562 9518314 1023 1023;1860;2492;4418;4887;28290;30014;57029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9480562-9518314&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.414634146341 0.38198757764 13.5716780488 0.6698 0.520641463415 13.0510365854 1.05620209095 1.029421734 190 7 7;32;190;2502;3527;4447;12142;19347 22.9527317073 0.3935 0.739734146341 22.212997561 1.13497988056 1.04817311381 4 Best 4 4;8;122;2361;2406;2774;2953;4665 0.540288314788 chr12:31145410-31145605- 0.53176866593 chr12:31145410-31145605- ENST00000518709.5 NCintron pseudo-exon AC092821.1 pseudo exons 2506 531954 chr19:50785936-50786001- NoOverlap chr19 50785936 50786001 - 10.0776182129 22 0.760960486069 8.04517268051 2.03244553235 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;50785935;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A50785936-50786001-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A50785936-50786001&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.817377403091 0.574082651618 0.48871719295 51289193 51289258 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;51289192;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A50785936-50786001-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A51289193-51289258&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPQNVTLAMALFTILTSIYFFNKVSGR Same 533430 chr19:50785936-50786001- 2516 2516 -10 0 1690 50785936 50790413 Best 2506 2506;17846;72432 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:50785936-50790413&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.0 14.0908727273 0.9717 7.26856363636 6.82230909091 0.84731680979 0.861523313655 1481 Best 1481 1481;2734;6730 14.3880909091 0.3463 7.83702272727 6.55106818182 0.393002112224 0.657288919896 4002 Best 4002 4002;5486;5677 0.0 0.0 ENST00000562076.1 NC protein-coding gene protein coding gene ENSG00000261341 2509 498382 chr13:51453246-51453308+ NoOverlap chr13 51453246 51453308 + 5.86939987966 21 0.684447060277 -3.14637140788 9.01577128754 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51453245;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51453246-51453308%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51453246-51453308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.350389156585 0.573770241398 1.05616402336 52027382 52027444 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;52027381;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51453246-51453308%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A52027382-52027444&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RVRASGRAGRPGGGLREGAGPDCGR Same 500396 chr13:51453246-51453308+ 2611 2611 -102 0 1692 51451954 51453308 Best 2509 2509;31159;43962;47923;61724;62277 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51451954-51453308&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.873015873016 1.22972972973 -0.0949333333333 0.8325 -7.72784285714 7.63290952381 0.131008201023 0.933925848157 13006 Best 13006 13006;20772;28117;30456;57539;72100 -4.32141428571 0.3756 -10.0984095238 5.7769952381 0.0256438571473 0.632476754828 25121 8845 8845;20580;21846;25121;49423;71224 0.0 0.0 ENST00000593672.5,ENST00000483288.5 NCintron,AntiUTR5intron not annotated putative regulatory region 2515 577722 chr7:27184409-27184471+ NoOverlap chr7 27184409 27184471 + 7.07490463626 21 0.845780698791 1.19974760037 5.87515703589 ENST00000006015.3,ENST00000517402.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27184408;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184409-27184471%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27184409-27184471&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.639837628314 0.573612325243 0.930689582153 27224028 27224090 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27224027;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184409-27184471%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27224028-27224090&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAGRCLYTYWSRRPCPQCGRK Same 578761 chr7:27184409-27184471+ 2409 2409 106 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.650793650794 0.904306220096 1.09455714286 0.8996 -2.11831904762 3.21287619048 0.0633700244526 0.600189672327 20691 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -12.0414714286 0.8783 -16.383152381 4.34168095238 -0.0391903374892 0.525572755844 64635 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000006015.3 AntiCDS not annotated putative regulatory region 2523 572287 chr6:99531419-99531478+ NoOverlap chr6 99531419 99531478 + 3.08546003699 20 0.821187914855 -7.27640989795 10.3618699349 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;99531418;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99531419-99531478%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A99531419-99531478&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0425952020098 0.572806343664 1.0393769946 99979295 99979354 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;99979294;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99531419-99531478%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A99979295-99979354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DVTYKELKNLLNSKNIMLIDVR Same 573312 chr6:99531419-99531478+ 2432 2432 91 0 705 99531419 99531785 1091 1091;2523;5369 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:99531419-99531785&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.233333333333 0.0 5.80809 0.939 -9.175435 14.983525 0.650156300324 1.04056464483 2302 1843 1843;2302;2895 17.26128 0.796 -14.10661 31.36789 0.959918401012 1.01749321013 1701 1178 1178;1315;1701 0.0 0.0 ENST00000452647.2 NC protein-coding gene protein coding gene ENSG00000228439 2531 483235 chr11:1085747-1085791+ NoOverlap chr11 1085747 1085791 + 13.9391132971 15 0.678203504489 1.99542646408 11.943686833 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1085746;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1085747-1085791%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1085747-1085791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.591513645742 0.572130340405 1.01347316272 1083743 1083787 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1083742;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1085747-1085791%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1083743-1083787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WPLRPTGCTAPKIHMDCSNLTALATSKPR Same 485165 chr11:1085747-1085791+ 2718 2718 -187 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.577777777778 0.28125 26.77378 0.911 4.68997333333 22.0838066667 0.77614180695 1.01302549032 1772 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 31.67064 0.5457 3.86545333333 27.8051866667 0.897209353842 1.03980520847 2116 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0844875405196 chr11:1176151-1176251+ 0.0861778134777 chr11:1234205-1234305+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 2534 479251 chr10:122799074-122799115+ NoOverlap chr10 122799074 122799115 + 13.8625642061 14 0.818301016905 3.63252867971 10.2300355264 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122799073;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122799074-122799115%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122799074-122799115&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.602939489508 0.572044636883 0.980202564193 124558590 124558631 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124558589;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122799074-122799115%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124558590-124558631&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWYTHNCGHHEDAGVICLGE Same 481156 chr10:122799074-122799115+ 2566 2566 -32 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.293706293706 22.3718 0.8406 10.8861785714 11.4856214286 0.610391035844 0.904135856225 2483 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 49.1977 0.9497 -3.51297857143 52.7106785714 0.98651492934 0.979727764503 1322 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.253886702183 chr10:122592272-122592595+ 0.229950182577 chr12:7369357-7369665- ENST00000605982.1 NC pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 2536 512293 chr16:72427094-72427168+ NoOverlap chr16 72427094 72427168 + 5.10948405504 25 0.893040970474 -1.47059603214 6.58008008718 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72427093;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427094-72427168%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72427094-72427168&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.511026214729 0.571938448179 1.00952771628 72460993 72461067 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72460992;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427094-72427168%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72460993-72461067&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IILQQQAGSQRFIYIHCYHQGDEWGRSEALLQDPLWE Same 513937 chr16:72427094-72427168+ 2537 2537 -1 0 1711 72425643 72428006 Best 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52 0.197368421053 -0.18374 0.9946 -3.892912 3.709172 0.0983487254028 0.668169755932 16031 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -8.647636 0.7945 -10.174196 1.52656 -0.0338551135847 0.458785625339 60519 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000564508.2,ENST00000561611.2,ENST00000624829.3 NC,AntiNC,AntiNCintron not annotated potentially spurious 2547 549314 chr22:50546988-50547044+ NoOverlap chr22 50546988 50547044 + 9.59842104033 19 0.67595298615 3.55797360445 6.04044743588 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50546987;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50546988-50547044%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50546988-50547044&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.614820004142 0.570902060638 0.903984604661 50985417 50985473 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;50985416;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50546988-50547044%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A50985417-50985473&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDPLRLGAAGSVWDAVDGAAALDAHAR Same 550686 chr22:50546988-50547044+ 2602 2602 -55 0 132 50546280 50548166 159 159;2208;2547;11730 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50546280-50548166&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.842105263158 1.01785714286 22.6480263158 0.9485 9.42287894737 13.2251473684 0.930406521119 1.00139364567 1188 163 163;1188;1930;2331 23.9255105263 0.5387 6.53279473684 17.3927157895 0.898417171429 0.950123557136 2111 2034 2034;2111;2881;2938 0.0 0.0997111085468 chr6:43628977-43629162- ENST00000434237.1 NCintron coding exon(s) KLHDC7B 5' extension 2551 559059 chr4:56419655-56419774+ NoOverlap chr4 56419655 56419774 + 3.28092255677 40 0.670666819257 -3.16168000605 6.44260256282 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;56419654;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56419655-56419774%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A56419655-56419774&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.2166820089 0.570539223339 1.05414402136 57285821 57285940 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;57285820;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56419655-56419774%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A57285821-57285940&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FVTPSPMEETAFFNNVASNYLPCLMYIMHISFTSLPNAGISTSVLEPSNNTTFIPTVANEGGKHWTVPEVRALIDIWSDKSIQRQLEGTVRNK Same 560044 chr4:56419655-56419774+ 2698 2698 -147 0 775 56410528 56419951 1197 1197;2551;4102;21082 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:56410528-56419951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.433333333333 0.181818181818 -1.7075075 0.8426 -8.8428325 7.135325 0.179766307879 0.974195183414 9723 1822 1822;5450;9723;11374 20.26558 0.8562 -5.63522 25.9008 1.02501258752 1.033771388 700 651 651;699;700;2092 0.0 0.0 ENST00000264220.6,ENST00000507724.1 AntiCDSintron,AntiNCintron pseudogene Transcribed unprocessed pseudogene. Myb/SANT-like DNA-binding domain containing (ENSG00000283156) 2562 509718 chr15:82711740-82711784- NoOverlap chr15 82711740 82711784 - 9.62791994413 15 0.828599476107 -0.0928532759349 9.72077322006 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;82711739;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A82711740-82711784-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A82711740-82711784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.551482451612 0.569478357031 1.03902819968 83380492 83380536 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;83380491;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A82711740-82711784-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A83380492-83380536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPEPGDVFLFRLIPPT Same 511449 chr15:82711740-82711784- 2517 2517 45 0 422 82699633 82711838 594 594;666;2562;3438;6176 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:82699633-82711838&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.622222222222 0.25 13.1929733333 0.9826 -2.14165333333 15.3346266667 0.806489105911 1.03334676567 1646 242 242;908;1397;1646;2079 18.1560133333 0.4471 -2.38426666667 20.54028 0.672373107327 1.00846770158 2921 862 862;988;2701;2921;3420 0.0 0.0 ENST00000440089.1 NC pseudogene unitary pseudogene ENSG00000228141 2567 520816 chr17:29125899-29125943- NoOverlap chr17 29125899 29125943 - 13.0877401352 15 0.902006561379 8.16716656312 4.92057357207 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;29125898;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29125899-29125943-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A29125899-29125943&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.652591832443 0.569179983318 0.668946361073 27452917 27452961 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;27452916;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29125899-29125943-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A27452917-27452961&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VQLTPVEEAHQRLERIFTASVMPLLCVGPSPWPPSS Same 522234 chr17:29125899-29125943- 2481 2481 86 0 147 29124548 29133836 176 176;1108;2567;6559;7208;9587 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:29124548-29133836&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.644444444444 0.428571428571 16.4089666667 1.0 7.10527333333 9.30369333333 0.840226461135 0.907574056648 1507 498 498;1507;2077;2179;3115;4205 30.5435666667 0.7875 12.1578533333 18.3857133333 0.997652152327 0.917667778232 1147 450 450;1147;2200;2400;2550;3310 0.0 0.0862530024926 chr11:66334514-66335251- ENST00000533420.2,ENST00000527372.5,ENST00000528322.6 NC,CDSintron,NCintron coding exon(s) MYO18A alternative first exon plus four cassette exons 2569 518057 chr17:48593541-48593609+ NoOverlap chr17 48593541 48593609 + 8.29410001506 23 0.835294117647 5.64592603756 2.6481739775 ENST00000239151.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48593540;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593541-48593609%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48593541-48593609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.805727359206 0.569013913661 0.588008235103 46670903 46670971 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46670902;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593541-48593609%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46670903-46670971&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPSHCNCSRKSRCAWQRDPCKSRSESCHCHNLATDSPGHLDNAPR Same 519458 chr17:48593541-48593609+ 2511 2511 58 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.623188405797 0.605263157895 0.0012652173913 0.9976 -0.879813043478 0.88107826087 0.0218778159997 0.402282162546 31866 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -17.8190565217 0.9341 -14.8282956522 -2.99076086957 -0.0329168008076 0.229573800366 59717 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000239151.5,ENST00000552000.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 2592 539490 chr2:88861884-88861919- NoOverlap chr2 88861884 88861919 - 7.77034164841 12 0.825894560159 -6.16004165759 13.930383306 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;88861883;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88861884-88861919-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A88861884-88861919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.269658090183 0.567046505983 0.987975114565 89161396 89161431 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;89161395;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88861884-88861919-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A89161396-89161431&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFVQQDNGELSLWWTFGQGTKVEIKR None NA NA 0 10 88857382 88861919 10 10;114;2592;3402;9296 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:88857382-88861919&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 1.22727272727 6.85900833333 0.9849 -6.75906666667 13.618075 0.455938052401 1.04373190573 3460 79 79;1171;1739;3460;3823 12.897025 0.6785 -9.86419166667 22.7612166667 0.695880372186 1.04053936908 2825 216 216;1028;1387;2681;2825 0.0 0.0 ENST00000377423.5,ENST00000430694.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 2594 553032 chr3:109148279-109148317+ NoOverlap chr3 109148279 109148317 + 10.6323308119 13 0.941206988632 -0.840946199802 11.4732770117 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;109148278;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A109148279-109148317%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A109148279-109148317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.493922984542 0.566781048346 1.03099366196 108867126 108867164 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;108867125;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A109148279-109148317%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A108867126-108867164&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IAGALGAPFLLEDPANQFLRLKRHVNLQDYWDPDHSSDVWVNTLAK Same 553984 chr3:109148279-109148317+ 2362 2362 232 0 1759 109148279 109148317 Best 2594 2594 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:109148279-109148317&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.541666666667 13.6268769231 0.9792 -1.07566153846 14.7025384615 0.747717168124 1.03205931319 1877 Best 1877 1877 20.1068769231 0.4616 -2.42167692308 22.5285538462 0.666192583275 1.02048216012 2945 Best 2945 2945 0.0 0.0 ENST00000467240.1,ENST00000477643.5 NC,NCintron protein-coding gene protein coding gene ENSG00000241224 2595 535726 chr2:166414577-166414729+ NoOverlap chr2 166414577 166414729 + 6.40806671217 51 0.33898814733 1.31003728012 5.09802943205 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;166414576;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A166414577-166414729%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A166414577-166414729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.356958220446 0.566706142421 1.00386915228 167271087 167271239 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;167271086;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A166414577-166414729%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A167271087-167271239&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPTSGKKEPFGYMGMVWAIISVGFLGFIV*AHHMFTVGIDIDTRAYFTSATIYIYI Same 537089 chr2:166414577-166414729+ 2953 2953 -358 24 932 166414489 166414729 1436 1436;2595 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:166414489-166414729&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.424836601307 0.290322580645 -0.228090196078 0.053 -1.02862156863 0.800531372549 0.0132838132981 0.495246964439 35402 26191 26191;35402 26.2541254902 0.6431 5.74614509804 20.5079803922 1.04876531375 1.0380395992 343 Best 343 343;574 0.0 0.836909138716 chrM:5904-7445+ ENST00000409855.5,ENST00000424326.5 AntiCDSintron,AntiNCintron pseudogene mitochondrially encoded cytochrome c oxidase I (MT-CO1) pseudogene (ENSG00000283657) 2601 482372 chr10:117551337-117551450- NoOverlap chr10 117551337 117551450 - 4.78172889822 38 0.919133207246 1.10060005361 3.68112884462 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117551336;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551337-117551450-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117551337-117551450&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.689199981107 0.566020228845 0.841691114272 119310848 119310961 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119310847;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551337-117551450-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119310848-119310961&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FEQSCYQILLWAGKGGVGVDCGSLSRSVQPEIARNEDVEA*DTKGINLISMKPFLLTIVGPFQPPNPPYFQSLVCNK Same 484299 chr10:117551337-117551450- 2592 2592 9 10 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.561403508772 0.846235418876 1.63854736842 0.9901 0.601984210526 1.03656315789 0.172352038028 0.506226721256 10146 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -2.49172368421 0.893 -3.46447631579 0.972752631579 0.0661104263765 0.511599505949 15779 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 not annotated putative regulatory region 2604 573887 chr6:15246025-15246114- NoOverlap chr6 15246025 15246114 - 7.79833334039 30 0.86416469571 7.16851993004 0.629813410342 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;15246024;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15246025-15246114-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A15246025-15246114&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.951950014287 0.565660340244 0.391729056773 15246256 15246345 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;15246255;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15246025-15246114-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A15246256-15246345&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MLEVTFVLQQQCEQKSQLQRRRRRRRQHHSEGSPSLFFPSPLTNER Same 574916 chr6:15246025-15246114- 2659 2659 -55 0 1766 15244943 15246114 Best 2604 2604;15135;20464;24558;26329;27078;34912;61691;69748 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:15244943-15246114&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.7 1.01851851852 -0.278956666667 0.9036 -1.16442666667 0.88547 0.00156794958534 0.440785946346 40709 9551 9551;16260;24695;37413;40709;45352;56150;59595;63982 -8.55335333333 0.6001 -9.64258666667 1.08923333333 -0.0353612905584 0.464758746818 61735 10022 10022;12289;27835;30484;54557;56016;61735;63783;63901 0.0 0.0 not annotated putative regulatory region 2622 557799 chr3:184500281-184500322- NoOverlap chr3 184500281 184500322 - 11.2384785073 14 0.880804150454 1.24407138143 9.99440712588 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;184500280;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184500281-184500322-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A184500281-184500322&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.568115251075 0.564131570659 1.02155682939 184218069 184218110 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;184218068;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184500281-184500322-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A184218069-184218110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMGTLEGHLLPAMFFLLYSLYYMVLVSLALLQEQR Same 558770 chr3:184500281-184500322- 2476 2476 146 0 22 184499610 184500370 22 22;541;811;1939;2622;7155;17966 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:184499610-184500370&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.0 13.52175 0.9946 6.91279285714 6.60895714286 0.660341922215 0.760845529586 2257 35 35;97;1016;1294;1807;1985;2257 15.1828071429 0.4945 3.84767857143 11.3351285714 0.47569894002 0.770031081809 3634 17 17;96;2057;2581;2827;2852;3634 0.0 0.0368170978895 chr1:182399664-182400485- ENST00000444495.1 AntiCDSintron pseudogene transmembrane epididymal protein 1 (TEDDM1) pseudogene (ENSG00000283625) 2623 534417 chr2:97702688-97702729+ NoOverlap chr2 97702688 97702729 + 11.8651358911 14 0.804765174552 -6.9001642423 18.7653001334 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;97702687;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A97702688-97702729%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A97702688-97702729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.565965546883 0.564013937719 0.983856388251 98319151 98319192 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;98319150;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A97702688-97702729%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A98319151-98319192&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPLANTTYNIFIMDGKTWWHNSEEK Same 535767 chr2:97702688-97702729+ 2375 2375 248 0 539 97701174 97702729 818 818;2623 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:97701174-97702729&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.309523809524 0.0 22.1422214286 0.9035 -10.2747857143 32.4170071429 0.555005093151 0.991163122262 2785 998 998;2785 22.1422214286 0.2824 -10.2747857143 32.4170071429 0.441680418767 1.03749127563 3771 2508 2508;3771 0.0 0.0 ENST00000445382.6 NC protein-coding gene protein-coding gene ENSG00000228486 2632 494064 chr12:2726994-2727050- NoOverlap chr12 2726994 2727050 - 14.4351893977 19 0.552498664836 10.558594735 3.87659466267 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2726993;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2726994-2727050-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2726994-2727050&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.631042527925 0.563163408656 0.615155307419 2836160 2836216 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2836159;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2726994-2727050-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2836160-2836216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EMTAAAVAALIPVLYSVASNIWLLHWVAAVVWFNCHVWSGGVR Same 496058 chr12:2726994-2727050- 2738 2738 -106 0 179 2726421 2727050 216 216;432;1226;2632;8002 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2726421-2727050&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.578947368421 0.209558823529 12.2341368421 0.4849 4.18303684211 8.0511 0.308883242169 0.918483151621 5423 1901 1901;3324;5423;5720;8206 23.5474894737 0.4172 7.84991052632 15.6975789474 0.760034216097 0.91097137761 2603 333 333;1730;1907;2558;2603 0.0 0.0 pseudogene gap junction beta family pseudogene (ENSG00000283587) 2640 524603 chr18:54418872-54419021+ NoOverlap chr18 54418872 54419021 + 4.85650209084 50 0.677616235599 1.14709201574 3.7094100751 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;54418871;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54418872-54419021%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A54418872-54419021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.604429548131 0.562543805164 0.892746675785 51945242 51945391 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;51945241;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54418872-54419021%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A51945242-51945391&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSYTHSVIAGQVIFFPKNILYWIKNVGNEDCFFLLFFSTHDELQTLNVDDVFFSVTETLLPGNLK Same 526039 chr18:54418872-54419021+ 2685 2685 -45 0 663 54415278 54424623 1020 1020;1399;1951;1974;2187;2640;3987;7059;26481;56311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:54415278-54424623&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.346666666667 0.222222222222 8.945156 0.8187 1.18422 7.760936 0.893918817005 1.03389619871 1312 Best 1312 1312;1532;1793;1867;1963;3255;3308;3468;3714;4481 26.522808 0.6346 6.927626 19.595182 1.06081462654 1.03311710981 217 85 85;217;311;1380;1426;2121;2398;2457;2578;2838 0.0 0.0 pseudogene unitary pseudogene ENSG00000283613 2641 501988 chr14:72553290-72553343+ NoOverlap chr14 72553290 72553343 + 10.1858777536 18 0.996478556836 6.34442226754 3.84145548609 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;72553289;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A72553290-72553343%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A72553290-72553343&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.691186574199 0.56252320905 0.656730790981 73019998 73020051 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;73019997;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A72553290-72553343%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A73019998-73020051&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CCWRRVRMAAAFHPRGGFLPAVGE Same 503890 chr14:72553290-72553343+ 2747 2747 -106 0 600 72553290 72562586 923 923;2491;2641;13239 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:72553290-72562586&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.560553633218 6.77010555556 0.9854 3.79155 2.97855555556 0.330300273426 0.546099261777 5004 639 639;1850;5004;21038 7.67676111111 0.3458 2.53053888889 5.14622222222 0.161692658532 0.586339435114 7481 1893 1893;3067;7481;29220 0.0 0.0 ENST00000554474.5,ENST00000343854.10,ENST00000554300.1,ENST00000555303.1 NC,CDSintron,NCintron,AntiNCintron coding exon(s) RGS6 cassette exon leading to alternative frame final coding exon 2644 498689 chr13:88571657-88571722+ NoOverlap chr13 88571657 88571722 + 11.4658044252 22 0.440604257267 -4.54391364618 16.0097180713 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;88571656;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A88571657-88571722%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A88571657-88571722&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.469870256769 0.561933468872 0.974782226035 89223912 89223977 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;89223911;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A88571657-88571722%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A89223912-89223977&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NTLPPYHLVLIIITIGINQLHLAFLHICTHFFLK Same 500706 chr13:88571657-88571722+ 2844 2844 -200 0 377 88571657 88572214 524 524;1355;2644;12802 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:88571657-88572214&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.378787878788 0.0 -0.190154545455 0.0936 -4.70973181818 4.51957727273 0.028311874063 0.716087109943 29351 28586 28586;29351;44731;58679 31.5594636364 0.7018 -20.6815409091 52.2410045455 0.992451428234 0.952287183469 1232 Best 1232 1232;1484;1802;1828 0.0 0.79580984636 chrM:12337-14148+ pseudogene mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene (ENSG00000283130) 2649 493932 chr12:132125194-132125310+ NoOverlap chr12 132125194 132125310 + 7.27406418018 39 0.337779186303 1.05735641336 6.21670776682 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132125193;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132125194-132125310%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132125194-132125310&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.301452491535 0.561179245855 1.03110758205 132609739 132609855 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132609738;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132125194-132125310%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132609739-132609855&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETHEYYLYLQEHLIRLQKQKLQLLPPPPPPQALPGAQPTTQVQVQPSPAYHSR Same 495923 chr12:132125194-132125310+ 3116 3116 -467 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.623931623932 0.298469387755 18.7400897436 0.8078 5.5367025641 13.2033871795 1.0555134692 1.04064565257 196 Best 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 27.4547717949 0.5882 6.05268205128 21.4020897436 1.09912760753 1.04394742938 56 Best 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.945813535319 chr12:132064668-132064886+ 0.898375991722 chr12:132064668-132064886+ ENST00000332441.7 NC redundant PhyloCSF signals are accounted for elsewhere on the list 2653 511144 chr16:29864836-29864880+ NoOverlap chr16 29864836 29864880 + 7.49169998566 15 0.88688995702 -2.48825331132 9.97995329698 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;29864835;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A29864836-29864880%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A29864836-29864880&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.424983913319 0.560868965195 1.04988587925 29876157 29876201 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;29876156;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A29864836-29864880%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A29876157-29876201&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KQSQDQATQISKRGNPLPQDHR Same 512786 chr16:29864836-29864880+ 2555 2555 98 0 757 29864731 29864880 1160 1160;2653 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:29864731-29864880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488888888889 1.15384615385 9.63635333333 0.9754 -1.81810666667 11.45446 0.624031327636 1.02810217587 2416 901 901;2416 9.80012666667 0.4227 -4.83577333333 14.6359 0.401293378734 0.907873929677 3953 2584 2584;3953 0.0 0.0 ENST00000398859.3 NC pseudogene unitary pseudogene ENSG00000214725 2662 546343 chr21:8393338-8394465+ NoOverlap chr21 8393338 8394465 + 1.0940914911 376 0.175316787034 0.963862757436 0.130228733664 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8393337;1128;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393338-8394465%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8393338-8394465&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.594748924086 0.559943177429 0.635219547296 153722 154849 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153721;1128;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393338-8394465%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153722-154849&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARSWILGAGGRSAARRATARPRPLPLGAPSMLLAECPAGPEAFTLKKLECSKQARAAWIPQLGIME*DRGSILLVFGTEAMIKRDGRGHSYCAARGEILGPAQDGPERKHLPRMFSLIKNESRRFEDDQIPS*FRP*TMPTGDAAALFP*PAGQLPGNQSLWVPGGVWLQS*NLKELTEGHHQEWSLRLNLTQHGKPHPARTRTGLTD**LFLDSVGGGAWPFLVGGAICLVNSDNERDSGMLTSYATPERSASPNFLEGQVAFSHPRLSNNRSVMPLDVRGCTRATLTGSACAYPTPAGAGNPLNPIRDGDRGLQLFPMNEEFPVSAGHKLALIKSLPFVHTARRYYRLDGLVRPSDRPRRGRPTALAER*EDGR Same 547760 chr21:8393338-8394465+ 1283 1283 1379 214 1814 8392730 8401986 Best 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.576241134752 1.08357348703 -0.931321276596 0.2529 -1.10253510638 0.171213829787 0.0476647063668 0.386051540398 23671 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -1.97644867021 0.1332 -1.6763212766 -0.300127393617 0.0324591449286 0.255222879425 23020 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0398580446736 chr8:144522475-144523409- ENST00000623860.2,ENST00000625598.1 NCintron,AntiNC not annotated LSU-rRNA_Hsa 2663 546405 chr21:8437548-8438675+ NoOverlap chr21 8437548 8438675 + 1.0940914911 376 0.175316787034 0.963862757436 0.130228733664 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8437547;1128;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437548-8438675%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8437548-8438675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.594748924086 0.559943177429 0.635219547296 153722 154849 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153721;1128;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437548-8438675%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153722-154849&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARSWILGAGGRSAARRATARPRPLPLGAPSMLLAECPAGPEAFTLKKLECSKQARAAWIPQLGIME*DRGSILLVFGTEAMIKRDGRGHSYCAARGEILGPAQDGPERKHLPRMFSLIKNESRRFEDDQIPS*FRP*TMPTGDAAALFP*PAGQLPGNQSLWVPGGVWLQS*NLKELTEGHHQEWSLRLNLTQHGKPHPARTRTGLTD**LFLDSVGGGAWPFLVGGAICLVNSDNERDSGMLTSYATPERSASPNFLEGQVAFSHPRLSNNRSVMPLDVRGCTRATLTGSACAYPTPAGAGNPLNPIRDGDRGLQLFPMNEEFPVSAGHKLALIKSLPFVHTARRYYRLDGLVRPSDRPRRGRPTALAER*EDGR Same 547818 chr21:8437548-8438675+ 1284 1284 1379 214 1815 8436296 8446217 Best 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.576241134752 1.08357348703 -2.4906481383 0.2988 -2.44650638298 -0.0441417553191 0.063340957761 0.370287632609 20706 Best 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -3.9856393617 0.2311 -3.72365452128 -0.261984840426 0.063397257615 0.24917302917 16258 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 ENST00000627981.1 AntiNC not annotated LSU-rRNA_Hsa 2665 561214 chr4:17873731-17873838- NoOverlap chr4 17873731 17873838 - 4.58744714161 36 0.931807431144 0.26299735407 4.32444978754 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17873730;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17873731-17873838-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17873731-17873838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.625234420044 0.55992325614 0.898017942039 17875354 17875461 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17875353;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17873731-17873838-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17875354-17875461&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LENVCPNSWRSKTLKDCRIFLRKLNCLEHRNTFKLNTIIYSPESTDSGNTHQTHMEESK Same 562205 chr4:17873731-17873838- 2700 2700 -35 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.324074074074 0.0 9.05587222222 1.0 -0.379555555556 9.43542777778 0.972827070473 1.05519784686 946 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 16.2727888889 0.7984 -5.86757777778 22.1403666667 0.995149728821 1.05788191224 1192 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 2669 531731 chr19:48497920-48498123- NoOverlap chr19 48497920 48498123 - 3.32123970739 68 0.570333993062 -1.3890749479 4.71031465529 ENST00000270238.3,ENST00000600059.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48497919;204;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48497920-48498123-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48497920-48498123&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.302998725447 0.559590122212 0.994034607053 49001177 49001380 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49001176;204;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48497920-48498123-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49001177-49001380&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGGESAGEWGAEVPRGRGEGAGEWGPDTPKERGQGVREWGPEIPQEHGEATRDWALESPRALGEDARELGSSPHDRGASPRDLSGESPCTQR Same 533206 chr19:48497920-48498123- 2607 2607 62 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.661764705882 0.322784810127 4.11006029412 0.8779 -5.69149852941 9.80155882353 0.807618652992 1.08974558652 1641 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -6.19936176471 0.6413 -18.4810794118 12.2817176471 0.386436428284 0.98140877177 4032 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.206983106526 chr17:81120201-81122823- ENST00000270238.3 CDS coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 2671 579663 chr7:142381077-142381121+ NoOverlap chr7 142381077 142381121 + 4.84213988781 15 0.661005569543 -9.85825331211 14.7003931999 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142381076;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142381077-142381121%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142381077-142381121&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0380559719523 0.559507453502 0.942824555891 142250887 142250843 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142250886;-43;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142381077-142381121%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142250887-142250843&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HNAMYWYRQDLGLGLRLIHYSNTAGTTGK None NA NA 0 362 142381077 142408131 503 503;2671;2771;4607;6492;14294;16204;21550;22314 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142381077-142408131&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.422222222222 0.0 12.3201333333 0.9228 -20.1906066667 32.51074 0.535153004247 1.12263355503 2903 2259 2259;2284;2682;2903;3300;3654;22326;44473;52081 14.18206 0.4696 -26.6138133333 40.7958733333 0.634432854195 0.876141791551 3046 2619 2619;2643;2937;3046;3257;3635;4345;4428;8592 0.0 0.0 ENST00000390360.3 NC immunoglobulin segment overlaps an immunoglobulin region 2676 505788 chr14:105600943-105600996- NoOverlap chr14 105600943 105600996 - 4.60598331855 18 0.631850665039 -8.09858324793 12.7045665665 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105600942;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600943-105600996-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105600943-105600996&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0796507152994 0.559370544799 0.979059183278 106067280 106067333 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106067279;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600943-105600996-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106067280-106067333&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILQSSCDGGGHFPPTIQLLCLVSGYTPGTINITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTK None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.409090909091 8.6327 0.9772 -7.61068888889 16.2433888889 0.754712044119 1.01719029532 1844 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 5.27906666667 0.4961 -14.8606055556 20.1396722222 0.538040262337 1.05741364385 3396 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0868587693931 chr19:55540846-55541526- ENST00000390541.2 NC immunoglobulin segment overlaps an immunoglobulin region 2681 503453 chr14:23104234-23104293- NoOverlap chr14 23104234 23104293 - 7.34141007662 20 0.86342183566 1.53814997766 5.80326009896 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23104233;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23104234-23104293-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23104234-23104293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.634384938358 0.558188854097 0.915000634857 23573443 23573502 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23573442;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23104234-23104293-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23573443-23573502&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSLLNPGYKGESCLGAKVRLSQQH Same 505292 chr14:23104234-23104293- 2569 2569 112 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.0 6.24002 0.9503 -1.912305 8.152325 0.488535860641 0.957084421191 3217 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 10.54668 0.5198 -5.13094 15.67762 0.632763168693 0.965121752401 3053 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 2685 501844 chr14:66488218-66488256+ NoOverlap chr14 66488218 66488256 + 10.2586000149 13 1.0 -0.612146065785 10.8707460807 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;66488217;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A66488218-66488256%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A66488218-66488256&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.460190858613 0.557409976066 1.03458535555 66954936 66954974 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;66954935;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A66488218-66488256%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A66954936-66954974&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCEESSVMELLKEAEEMKQNLVR Same 503744 chr14:66488218-66488256+ 2478 2478 207 0 255 66486676 66492148 330 330;1499;2685;2943;57197 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:66486676-66492148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.0 10.0267923077 1.0 -0.00853846153846 10.0353307692 0.590124380566 0.972301577166 2597 675 675;2288;2597;2857;39601 12.1593846154 0.3844 -0.447723076923 12.6071076923 0.319736324765 0.818150708958 4450 2915 2915;4165;4450;4700;22191 0.0 0.0 ENST00000359454.10,ENST00000556361.1 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000196553 2689 496181 chr12:70445450-70445530- NoOverlap chr12 70445450 70445530 - 3.15329995641 27 0.453917471297 -9.74323706274 12.8965370191 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70445449;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70445450-70445530-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70445450-70445530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0133758768001 0.557178723678 0.936406645848 70839230 70839310 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70839229;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70445450-70445530-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70839230-70839310&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AIAHLLKSIMTLGLPKTIKTDNGPRYLSAR Same 498181 chr12:70445450-70445530- 2363 2363 326 0 155 70445357 70448659 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.5 1.02486296296 0.1658 -6.40226296296 7.42712592593 0.0467016804917 0.96550432145 23895 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 10.8741851852 0.1834 -11.3371111111 22.2112962963 0.615175835789 1.07316071558 3122 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 2695 557222 chr3:150894204-150894239- NoOverlap chr3 150894204 150894239 - 7.42815834781 12 0.888223849851 -4.99051650365 12.4186748515 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;150894203;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A150894204-150894239-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A150894204-150894239&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.25308074831 0.556504266407 1.01944676592 150611991 150612026 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;150611990;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A150894204-150894239-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A150611991-150612026&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AYFRFHDPSSELAFTLEVGK Same 558191 chr3:150894204-150894239- 2565 2565 130 0 342 150891061 150905397 469 469;1530;2695;7586;8869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:150891061-150905397&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.0 13.9870416667 0.9706 -0.859541666667 14.8465833333 0.708164712497 1.02767810139 2052 200 200;1473;2046;2052;3618 28.379975 0.7092 -0.262641666667 28.6426166667 0.996965876552 1.04249238508 1155 250 250;1155;1164;1832;2392 0.0 0.0 ENST00000562308.5,ENST00000469268.1 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000214237 2707 502126 chr14:75279526-75279609+ NoOverlap chr14 75279526 75279609 + 6.0755928031 28 0.92313213223 2.53546063659 3.54013216652 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;75279525;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75279526-75279609%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A75279526-75279609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.736813418967 0.555310038311 0.757265130696 75746229 75746312 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;75746228;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75279526-75279609%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A75746229-75746312&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DEGGGCSGRVCKAVSLIKSEFILETPERRLRQRRRQGYL Same 504028 chr14:75279526-75279609+ 2719 2719 -12 0 456 75277155 75281681 653 653;2707;13175;15627;32302;36623;37128;61784;65414 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:75277155-75281681&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.559523809524 1.26315789474 0.312560714286 0.9976 -3.02371071429 3.33627142857 0.133066953065 0.658172007373 12830 3768 3768;6703;12830;13388;17137;39238;49903;64236;73058 -5.25969642857 0.7912 -11.1888785714 5.92918214286 0.0715413368792 0.675688885511 14942 9152 9152;14942;21009;33752;35396;56305;59433;66250;68586 0.0 0.0 ENST00000556324.2,ENST00000303562.8 NC,CDSintron not annotated putative regulatory region 2708 561226 chr4:17877352-17877402- NoOverlap chr4 17877352 17877402 - 8.84429407821 17 0.909154964343 2.44743537202 6.39685870619 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17877351;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17877352-17877402-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17877352-17877402&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.621731096674 0.55530731307 0.920997081935 17878975 17879025 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17878974;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17877352-17877402-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17878975-17879025&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GETAVIFQDLMDRINEKLKSIETTDMTSLVK Same 562217 chr4:17877352-17877402- 2593 2593 115 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.294117647059 1.82142857143 12.0796529412 1.0 3.55361176471 8.52604117647 0.756641280264 0.926824684808 1836 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 33.6319470588 0.9457 3.90658235294 29.7253647059 0.993614209011 1.04576684095 1215 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 2711 485944 chr11:111461911-111461937+ NoOverlap chr11 111461911 111461937 + 9.41728913122 9 0.919996948196 -6.41733340422 15.8346225354 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111461910;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111461911-111461937%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111461911-111461937&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.198101106227 0.554997277964 0.970399264756 111332636 111332662 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111332635;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111461911-111461937%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111332636-111332662&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDILEQELRAQEQYWCHQEQEEEQLLEQLGHLSQELHSTAESGAEQQVRPR Same 487902 chr11:111461911-111461937+ 2542 2542 169 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.0 7.32647777778 0.9402 -15.1553 22.4817777778 0.336089661071 0.9494776484 4906 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 5.6387 0.3371 -15.0758888889 20.7145888889 0.160673159353 1.01880118829 7536 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 pseudogene unitary pseudogene ENSG00000255093 2715 510862 chr16:20731620-20731661+ NoOverlap chr16 20731620 20731661 + 11.5524785689 14 0.779539831497 -5.37567148318 16.9281500521 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20731619;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20731620-20731661%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20731620-20731661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.548588234987 0.554538426912 0.976516586604 20742942 20742983 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20742941;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20731620-20731661%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20742942-20742983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INYLLQVVKAFVVLAPSCKSYSLEK Same 512500 chr16:20731620-20731661+ 2614 2614 101 0 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.452380952381 0.0 10.7003 0.9674 -2.0292 12.7295 0.640165146609 1.03803051061 2351 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 42.2357785714 0.7955 1.62824285714 40.6075357143 1.04403565447 1.01061092084 416 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.87068829951 chr12:7326976-7327095+ 0.86301738344 chr12:7326976-7327095+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 2725 505842 chr14:105855670-105855723- NoOverlap chr14 105855670 105855723 - 9.70004444652 18 0.657325602096 2.76314989643 6.93689455009 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105855669;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105855670-105855723-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105855670-105855723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.563712269846 0.553342320286 0.957764938922 106321775 106321828 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106321774;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105855670-105855723-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106321775-106321828&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LICQATGFSPRQIQVSWLREGK None NA NA 0 63 105837465 105856215 70 70;297;303;618;1534;1768;2725;3071;4703;4966;9883;19584;21248 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105837465-105856215&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.685714285714 19.6653055556 0.796 7.40518888889 12.2601166667 0.681664918507 1.00176433929 2155 171 171;488;606;760;1848;2075;2155;2623;3063;3220;4742;9758;24097 23.4838611111 0.4754 1.5159 21.9679611111 0.855991060698 1.02422015493 2291 30 30;154;1395;1760;1980;1989;2291;2612;2659;3437;3454;6249;20954 0.0 0.0 ENST00000390559.6,ENST00000612473.1 NC,NCintron coding exon(s) IGHM alternative final coding exons 2729 486199 chr11:117355685-117355738+ NoOverlap chr11 117355685 117355738 + 6.31902782122 18 0.880903334096 -2.10660562416 8.42563344538 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;117355684;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117355685-117355738%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A117355685-117355738&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.442129077861 0.552995767832 1.04461431015 117226401 117226454 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;117226400;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117355685-117355738%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A117226401-117226454&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLDSSPTEDLSWQGVPGEGGSIGSGRRRREPPGLWMEQVSK Same 488158 chr11:117355685-117355738+ 2661 2661 68 0 347 117354932 117356374 476 476;2729;7100;15490;19164;22431 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:117354932-117356374&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.213438735178 15.2798 1.0 -1.20201111111 16.4818111111 0.954171218256 1.02096184192 1071 650 650;1071;2341;2829;3370;5930 12.6945888889 0.4393 -6.74436666667 19.4389555556 0.649851596857 1.02339296779 2996 1307 1307;2765;2996;3723;3958;5242 0.0 0.0 ENST00000278935.7 CDSintron coding exon(s) CEP164 cassette exon 2730 470093 chr1:9951232-9951291- NoOverlap chr1 9951232 9951291 - 8.33628505766 20 0.726678873884 2.75767508745 5.57860997021 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;9951231;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A9951232-9951291-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A9951232-9951291&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.618992359969 0.552741000628 0.887694569559 10011290 10011349 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;10011289;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A9951232-9951291-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A10011290-10011349&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETTTPELYYLSVLLSVSSLTSTGK Same 471975 chr1:9951232-9951291- 2725 2725 5 0 290 9951232 9960787 384 384;1216;1412;2730 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:9951232-9960787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.333333333333 14.13822 0.9557 4.213595 9.924625 0.845222760726 0.996690792238 1491 1030 1030;1088;1472;1491 13.885375 0.394 1.13322 12.752155 0.549604020252 0.870308314352 3349 2577 2577;2658;2964;3349 0.0 0.0 ENST00000377205.5,ENST00000462686.1 AntiUTR5intron,AntiNCintron pseudogene unitary pseudogene ENSG00000283611 2733 577660 chr7:27143083-27143229+ NoOverlap chr7 27143083 27143229 + 4.44430202979 49 0.863077682435 1.33292643878 3.11137559101 ENST00000222726.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27143082;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143083-27143229%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27143083-27143229&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.68760824355 0.552637979856 0.824385632894 27182702 27182848 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27182701;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143083-27143229%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27182702-27182848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGFTMTYVQLAHPGVDLGLGGRRRARLALRTRLLAAGRGVLLGSGRRANPLSAADVGAAGVGRGAAGVA Same 578699 chr7:27143083-27143229+ 2668 2668 65 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.768707482993 0.875 -0.449606122449 0.9641 -2.66023877551 2.21063265306 0.119690360356 0.62414975993 13977 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -14.551455102 0.8872 -20.2772408163 5.72578571429 -0.00645470886948 0.670442890974 38839 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222726.3,ENST00000467897.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 2742 546408 chr21:8437798-8438838+ NoOverlap chr21 8437798 8438838 + 0.934740053527 347 0.173577266608 0.917827942599 0.0169121109282 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8437797;1041;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437798-8438838%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8437798-8438838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.481226130431 0.551649818998 0.677631160036 153972 155012 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153971;1041;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437798-8438838%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153972-155012&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTAGGIRIAPLEVKFLDRRKTDQSESICQECFH*SRTKVGGSKTIRYRRSSDHKRCRPAMRRRYSHDPPGSFRETKVFGFRGEYGCKAET*RN*RKGTTRSGACGLI*LNTGNLTRPGHGQD*QIDSSFSIPWVVVHGRS*LVERFVWLIPITNETLAC*LVTRPPSGRRPPTS*RDKWRSATRD*AITGL*CP*MSGAARALH*LAQRVPTLRRQARVTR*TPFVMGIGDCNYSP*TRNSQ*VRVISLR*LSPCPLYTPPVATTDWMV**GPRIGPAGVGPRPWRSAEKTVELDYLEEVKVVTRFP*VNLRKDH*RSPEGEARGGAAAAARFPPHTHPPTATRRVR Same 547821 chr21:8437798-8438838+ 1359 1359 1383 290 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.586935638809 1.12909149485 -3.94651757925 0.2926 -2.94413775216 -1.00237982709 0.0407307757252 0.361760698808 25364 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -5.94135043228 0.2353 -4.7755870317 -1.16576340058 0.0368743191581 0.223993158941 21806 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 ENST00000627981.1 AntiNC not annotated LSU-rRNA_Hsa 2751 577662 chr7:27143308-27143388+ NoOverlap chr7 27143308 27143388 + 5.85407398807 27 0.840207522698 1.44052595011 4.41354803796 ENST00000222726.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27143307;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143308-27143388%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27143308-27143388&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.669188462335 0.550414252904 0.848246200642 27182927 27183007 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27182926;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143308-27143388%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27182927-27183007&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGHGGAGQRIGLRRVRGRGRLAVPGLGGRRAGAGSVAAGALSGAK Same 578701 chr7:27143308-27143388+ 2663 2663 88 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.765432098765 0.993311036789 -2.74915555556 0.8896 -6.34033703704 3.59118148148 -0.0195597721494 0.646841079772 53853 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -15.7323074074 0.8641 -26.2762666667 10.5439592593 0.00236397674868 0.74769428414 34191 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222726.3,ENST00000467897.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 2764 480339 chr10:26667561-26667644- NoOverlap chr10 26667561 26667644 - 6.88212498969 28 0.628870614394 2.0748570753 4.80726791439 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;26667560;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26667561-26667644-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A26667561-26667644&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.567943879073 0.549230905246 0.891047690086 26956490 26956573 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;26956489;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26667561-26667644-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A26956490-26956573&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVNPRYVLRNWMAESAVQKAERNDFSDLR Same 482248 chr10:26667561-26667644- 2853 2853 -89 0 1152 26653135 26667644 1751 1751;2764;52781 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:26653135-26667644&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.452380952381 0.0 7.06931785714 0.6849 1.0288 6.04051785714 0.396552975631 0.884900417711 4052 1720 1720;4052;10531 11.2716357143 0.4514 -0.276928571429 11.5485642857 0.647391288813 0.885893070078 3003 330 330;3003;15239 0.0 0.0 ENST00000446557.1 NCintron pseudogene unitary pseudogene ENSG00000227932 2765 470916 chr1:26354279-26354311- NoOverlap chr1 26354279 26354311 - 5.22215443206 11 0.89400528517 -7.50479066372 12.7269450958 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;26354278;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26354279-26354311-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A26354279-26354311&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0552251483994 0.54918405476 1.00455706954 26680770 26680802 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;26680769;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26354279-26354311-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A26680770-26680802&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TRYYITVTLLGHR Same 472792 chr1:26354279-26354311- 2646 2646 119 0 1345 26354279 26360113 2019 2019;2765;11776;20942 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:26354279-26360113&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.606060606061 0.362637362637 2.05739090909 0.9665 -14.7037272727 16.7611181818 0.255818706707 1.02610742688 6796 1489 1489;2433;6796;54936 -4.59932727273 0.396 -16.4710090909 11.8716818182 0.024924542349 0.792906923695 25356 3180 3180;5046;25356;44290 0.0 0.0438382544948 chr15:90073071-90073262+ coding exon(s) CRYBG2 3 alternative first coding exons 2771 579669 chr7:142400193-142400237+ NoOverlap chr7 142400193 142400237 + 8.93260662556 15 0.719401846342 -3.45470713774 12.3873137633 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142400192;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142400193-142400237%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142400193-142400237&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.446347157843 0.548304484972 1.01843436021 142231757 142231713 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142231756;-43;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142400193-142400237%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142231757-142231713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVTLACHQTWNHNNMFWYRQDLGHGLRLIHYSYGVHDTNK None NA NA 0 362 142381077 142408131 503 503;2671;2771;4607;6492;14294;16204;21550;22314 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142381077-142408131&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 0.340909090909 14.64048 0.8868 -9.5853 24.22578 0.660311169258 0.966069536424 2259 Best 2259 2259;2284;2682;2903;3300;3654;22326;44473;52081 20.0421333333 0.4778 -14.7404666667 34.7826 0.746745792202 1.00564655203 2643 2619 2619;2643;2937;3046;3257;3635;4345;4428;8592 0.0 0.0 ENST00000390364.3 NC immunoglobulin segment overlaps an immunoglobulin region 2775 489036 chr11:76712306-76712350- NoOverlap chr11 76712306 76712350 - 6.8418799003 15 0.796093690394 -4.12713330587 10.9690132062 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;76712305;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76712306-76712350-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A76712306-76712350&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.331750475263 0.547437661918 1.04075166923 76423350 76423394 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;76423349;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76712306-76712350-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A76423350-76423394&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLTGDIFSTGIILQEVLTR Same 491025 chr11:76712306-76712350- 2742 2742 33 0 85 76712306 76719866 98 98;1554;2355;2775;9069;9723;10637;30796 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:76712306-76719866&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.577777777778 0.0 19.48086 0.9796 -4.07402666667 23.5548866667 0.878252593939 0.966466313568 1371 88 88;186;1371;1479;2258;2338;2434;2689 56.6320666667 0.978 -2.80080666667 59.4328733333 0.998567776744 0.998595223185 1128 838 838;995;1128;1187;1347;1571;1780;2549 0.0 0.535024020138 chrX:109398549-109398698- pseudogene extension GUCY2EP extended [ENSG00000204529] 2777 565642 chr5:139472562-139472618+ NoOverlap chr5 139472562 139472618 + 6.34313687094 19 0.842902747829 -1.44438413256 7.7875210035 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;139472561;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A139472562-139472618%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A139472562-139472618&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.47783356764 0.547394231052 1.03078665519 138852147 138852203 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;138852146;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A139472562-139472618%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A138852147-138852203&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFVFLSLSLVPPALNPPPQVPLGVCLFLFWSFSVCIHPCHPLSLPLSSQAGHYSWPSPAVNSSSEQEPQRQLPEVLSGTWEQPR Same 566637 chr5:139472562-139472618+ 2699 2699 78 0 50 139472562 139472807 56 56;2777;5603 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:139472562-139472807&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.59649122807 0.203571428571 10.2616526316 0.9819 -0.943352631579 11.2050052632 0.769556426972 1.03952224065 1790 247 247;1790;2114 13.2975 0.4272 -0.926373684211 14.2238736842 0.576989739068 0.910290000274 3241 211 211;3130;3241 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283288 2778 553966 chr3:167912863-167912901+ NoOverlap chr3 167912863 167912901 + 15.3581153429 13 0.894816040753 5.3456845444 10.0124307985 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;167912862;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A167912863-167912901%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A167912863-167912901&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.579943890267 0.547391358196 0.919553406682 167630651 167630689 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;167630650;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A167912863-167912901%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A167630651-167630689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NKWETWLQENWEDCK Same 554915 chr3:167912863-167912901+ 2640 2640 138 0 229 167912863 167917494 287 287;728;2041;2778 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:167912863-167917494&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.435897435897 0.0 17.6988769231 0.9565 7.33459230769 10.3642846154 0.736784685918 0.914986023901 1943 421 421;1323;1943;3547 32.6275153846 0.7761 4.81290769231 27.8146076923 1.03003301741 1.03012767612 622 411 411;622;1016;1276 0.0 0.0 ENST00000459923.5,ENST00000469060.5 NC,NCintron pseudogene unitary pseuodgene ENSG00000244227 2791 479918 chr10:8040459-8040497- NoOverlap chr10 8040459 8040497 - 7.32174621179 13 0.93135435557 -3.8078154165 11.1295616283 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8040458;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8040459-8040497-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8040459-8040497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.296661007213 0.546189277671 1.04102258724 8082422 8082460 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8082421;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8040459-8040497-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8082422-8082460&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDRPETSA*FLPSVEILIFNMIYFYEK Same 481826 chr10:8040459-8040497- 2732 2732 59 5 1909 8027079 8060257 Best 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.512820512821 0.787878787879 1.11937692308 0.9961 -12.5864230769 13.7058 0.261526034781 1.05884590666 6610 Best 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -9.88691538462 0.7729 -24.7751846154 14.8882692308 0.028405575452 0.870715629563 24238 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 not annotated putative regulatory region 2793 485003 chr11:65487766-65487825+ NoOverlap chr11 65487766 65487825 + 3.40245500654 20 0.885815213245 -6.37144986689 9.77390487343 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;65487765;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A65487766-65487825%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A65487766-65487825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0162906661838 0.546116142093 1.051234976 65255237 65255296 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;65255236;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A65487766-65487825%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A65255237-65255296&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLHHPPDQGGITRRQAHVTVSMVTSLSNPDWSCL Same 486957 chr11:65487766-65487825+ 2850 2850 -57 0 1911 65487766 65500691 Best 2793 2793;4431;9405 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:65487766-65500691&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.592105263158 -2.161525 0.9639 -10.781985 8.62046 0.120405416452 0.967778635004 13904 5229 5229;5912;13904 -2.85604 0.3309 -12.010415 9.154375 0.0827357925143 0.767898293493 13439 4000 4000;11089;13439 0.0 0.0 ENST00000622944.1 AntiNCintron not annotated putative regulatory region 2806 534716 chr2:110266031-110266156+ NoOverlap chr2 110266031 110266156 + 6.75527383174 42 0.410971236744 2.22113812254 4.53413570921 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110266030;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110266031-110266156%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110266031-110266156&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.398424488355 0.544723361768 0.941136977722 111023608 111023733 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111023607;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110266031-110266156%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111023608-111023733&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEPPHGKPSCSASVFSLQATSIAEVLCLTAYFGRLVHFAKVTPQMVFWKDTKDICTMVTTVASVHCSTCK Same 536068 chr2:110266031-110266156+ 3185 3185 -379 0 64 110261435 110272049 71 71;655;738;1590;1755;2806;2841;5622 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110261435-110272049&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.0 16.1399119048 0.766 6.97867857143 9.16123333333 1.05190914413 1.03749731575 230 39 39;230;616;725;1137;1749;1796;2218 43.4499809524 0.8186 14.6914142857 28.7585666667 0.949607362318 1.03959142684 1820 260 260;295;766;1197;1279;1318;1559;1820 0.0 0.0 ENST00000562665.5,ENST00000562613.2 NC,NCintron pseudogene ion transport protein domain-containing transcribed unprocessed pseudogene (ENSG00000261760) 2813 485683 chr11:85665113-85665175+ NoOverlap chr11 85665113 85665175 + 8.05665724618 21 0.801159685664 4.00911429383 4.04754295236 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;85665112;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85665113-85665175%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A85665113-85665175&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.700645466316 0.544018000701 0.741197940827 85376157 85376219 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;85376156;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85665113-85665175%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A85376157-85376219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QRRSRKSVVFAPVPPTAFRAPPGR Same 487642 chr11:85665113-85665175+ 2734 2734 79 0 640 85662411 85665175 984 984;2049;2813;3027;18118;20011;21291;24329;58708;71875 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:85662411-85665175&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.698412698413 1.34615384615 12.1228380952 0.9706 9.31629047619 2.80654761905 0.618339804348 0.540200915129 2447 Best 2447 2447;10858;11498;16615;27666;29218;29965;35821;36919;48364 9.73263333333 0.3924 6.6002 3.13243333333 0.2173049333 0.520374931571 5807 Best 5807 5807;12876;35731;45741;53410;58313;62812;66127;69825;72999 0.0 0.0 ENST00000534224.1,ENST00000531515.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 2824 491549 chr12:52079777-52079845+ NoOverlap chr12 52079777 52079845 + 5.16334351249 23 0.784389357164 -2.11023915867 7.27358267116 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52079776;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52079777-52079845%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52079777-52079845&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.412257999723 0.542655815125 1.03181274547 52473561 52473629 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52473560;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52079777-52079845%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52473561-52473629&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WSMNGSQAGAAAQAAWLSSCCNQSASPPEPPEGPR Same 493527 chr12:52079777-52079845+ 2801 2801 23 0 400 52079777 52080025 562 562;2824 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52079777-52080025&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.695652173913 0.838541666667 7.89896086957 0.8893 -2.91300434783 10.8119652174 0.662758937447 1.05386085163 2236 739 739;2236 7.05204347826 0.4971 -3.95988695652 11.0119304348 0.457187704084 0.853816035061 3701 47 47;3701 0.0 0.204920741829 chr17:46978645-46979007- ENST00000546390.1,ENST00000550301.1 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000284791 2831 470910 chr1:26171623-26171664- NoOverlap chr1 26171623 26171664 - 13.1646214213 14 0.771099412528 5.06562135475 8.09900006652 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;26171622;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26171623-26171664-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A26171623-26171664&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.578916120952 0.542205104984 0.909841088837 26498114 26498155 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;26498113;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26171623-26171664-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A26498114-26498155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DPSTLVSTSWCHEDHWSSRPLPPYRPPGRPVPPTMRFRRLTPGYFRVLQVSTPDQR None NA NA 0 99 26164164 26171664 118 118;480;770;917;2190;2831;39672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:26164164-26171664&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.571428571429 1.17482517483 13.9013428571 0.9792 2.95384285714 10.9475 0.738621813113 0.986618582217 1936 207 207;447;663;1046;1279;1936;69663 26.3507142857 0.4973 6.12977857143 20.2209357143 0.781419389979 0.966502550933 2545 7 7;93;1782;1970;2239;2545;42994 0.0 0.0548129313093 chr16:768379-768865+ ENST00000407889.6,ENST00000270812.5 NC,AntiUTR3 protein-coding gene protein-coding gene ENSG00000282872 2839 503471 chr14:23352646-23352732- NoOverlap chr14 23352646 23352732 - 6.20425864166 29 0.647018308195 1.17900691258 5.02525172908 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23352645;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352646-23352732-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23352646-23352732&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.531984735836 0.54167035536 0.919335918701 23821855 23821941 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23821854;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352646-23352732-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23821855-23821941&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAPRVATGTPEPNGGGGGKIDNTVEITPTSNGVSAR Same 505310 chr14:23352646-23352732- 2947 2947 -108 0 605 23352215 23352971 930 930;2839;33934;60530;60698;63662 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23352215-23352971&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.67816091954 0.805555555556 9.81109655172 0.9631 5.14244482759 4.66865172414 0.734974032958 0.781041299902 1960 1342 1342;1960;18367;45222;70218;73449 5.97914482759 0.4665 0.0647172413793 5.91442758621 0.326940589645 0.693354339262 4381 3678 3678;4381;6108;16098;43094;60471 0.0917912615729 chr14:23351948-23352214- 0.127560380181 chr2:176171517-176172274+ ENST00000354772.7,ENST00000474057.5 UTR5,NC under investigation SLC22A17 potential non-ATG start 2840 494077 chr12:2855276-2855317- NoOverlap chr12 2855276 2855317 - 7.58860005651 14 0.850995651179 -3.23630731446 10.824907371 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2855275;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2855276-2855317-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2855276-2855317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.374647027181 0.541660987021 1.04422408924 2964442 2964483 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2964441;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2855276-2855317-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2964442-2964483&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPPCTDMKSKVRQRLIHPWK Same 496071 chr12:2855276-2855317- 2757 2757 83 0 6 2849327 2855413 6 6;133;515;985;1632;2840;5109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2849327-2855413&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.619047619048 0.75 21.0920214286 0.9861 -4.21039285714 25.3024142857 0.848213998675 0.96835088845 1474 26 26;270;287;599;1474;2001;2776 25.3410357143 0.4384 -10.1595785714 35.5006142857 0.674714047775 1.02271417509 2904 189 189;675;1206;2115;2904;3470;3931 0.0 0.0 ENST00000537710.5 AntiNCintron protein-coding gene protein-coding gene ENSG00000283297 2841 534714 chr2:110261435-110261494+ NoOverlap chr2 110261435 110261494 + 11.588210094 20 0.484966048676 5.58756498992 6.00064510405 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110261434;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110261435-110261494%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110261435-110261494&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.49780473047 0.541650210695 0.88431802645 111019012 111019071 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111019011;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110261435-110261494%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111019012-111019071&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSSPPLTWSPLLCLNGEQDLLLAAAYVLDAQYNRNVPFETHLRPSGN Same 536066 chr2:110261435-110261494+ 3005 3005 -164 0 64 110261435 110272049 71 71;655;738;1590;1755;2806;2841;5622 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110261435-110272049&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.45 0.0 23.7998 0.7282 13.04631 10.75349 0.666948183753 0.939089363518 2218 39 39;230;616;725;1137;1749;1796;2218 53.94252 0.7486 20.2025 33.74002 0.99012209302 1.02522396786 1279 260 260;295;766;1197;1279;1318;1559;1820 0.0 0.0 ENST00000562613.2,ENST00000564038.5 NC,NCintron pseudogene ion transport protein domain-containing transcribed unprocessed pseudogene (ENSG00000261760) 2852 500760 chr14:22525643-22525708+ NoOverlap chr14 22525643 22525708 + 5.0392318666 22 0.881605249104 -2.44708655097 7.48631841757 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22525642;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22525643-22525708%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22525643-22525708&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.405435060314 0.540724600344 1.03609592382 22994613 22994678 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22994612;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22525643-22525708%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22994613-22994678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDQHCADRGSTLGRLYFGRGTQLTVWPGE None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.530303030303 0.22 8.17914545455 0.9803 -9.21946818182 17.3986136364 0.859850629338 0.983080968663 1430 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 8.04486818182 0.3781 -10.8770863636 18.9219545455 0.5936622452 1.04649205252 3189 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390519.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 2868 490636 chr12:9552442-9552495+ NoOverlap chr12 9552442 9552495 + 5.85188890828 18 0.653139543755 -5.32337763906 11.1752665473 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9552441;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9552442-9552495%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9552442-9552495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.226899143444 0.539486186208 1.02813505972 9705038 9705091 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9705037;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9552442-9552495%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9705038-9705091&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NMGLKVFTNLHYRKPEVCVMER Same 492612 chr12:9552442-9552495+ 2912 2912 -44 0 598 9552442 9566349 921 921;2868;3582;16714 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9552442-9566349&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.388888888889 0.490909090909 9.13890555556 0.9119 -9.57772222222 18.7166277778 0.713433356715 0.972900954932 2031 1470 1470;2031;2243;2612 19.2982222222 0.4527 -13.1738944444 32.4721166667 0.796955745091 1.01749326404 2486 1430 1430;2479;2486;4527 0.952266639455 chr12:31138117-31138265- 0.848088576406 chr12:31138117-31138265- ENST00000518709.5 NCintron pseudo-exon AC092821.1 pseudo exons 2875 491087 chr12:40421264-40421302+ NoOverlap chr12 40421264 40421302 + 12.2431231095 13 0.833005264363 -1.48899229673 13.7321154063 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40421263;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40421264-40421302%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40421264-40421302&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.530162396391 0.539216184977 1.00860133258 40815066 40815104 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40815065;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40421264-40421302%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40815066-40815104&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YGEHNVLNSRRGILTLMWDK Same 493064 chr12:40421264-40421302+ 2913 2913 -38 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.435897435897 0.590909090909 17.5153230769 0.9723 0.0153692307692 17.4999538462 0.831473172671 1.00675893076 1553 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 20.6190692308 0.4665 -0.0489230769231 20.6679923077 0.664579733249 0.991076152415 2948 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 2881 501749 chr14:61970131-61970220+ NoOverlap chr14 61970131 61970220 + 4.39504662144 30 0.78735433992 -1.48884994984 5.88389657127 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;61970130;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A61970131-61970220%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A61970131-61970220&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.442664230166 0.538946355285 0.994268213808 62436849 62436938 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;62436848;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A61970131-61970220%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A62436849-62436938&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YFFLCVLSPVTPEAIGFLSAVGVFIVLLAVLFLFINKKLCFETIGGLPFLEHR Same 503649 chr14:61970131-61970220+ 2846 2846 35 0 1983 61970131 61970220 Best 2881 2881 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:61970131-61970220&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488888888889 0.189473684211 12.4176766667 0.9631 1.75412333333 10.6635533333 0.994780501431 1.05397575793 792 Best 792 792 30.04866 0.9243 3.94275333333 26.1059066667 1.02136605822 1.05365001339 767 Best 767 767 0.0 0.0966640090723 chr1:210013633-210013797+ ENST00000554138.1 NC coding exon(s) SYT16 alternative first exon 2889 577726 chr7:27184781-27184855+ NoOverlap chr7 27184781 27184855 + 8.25664402246 25 0.822378881514 6.82094406843 1.43569995403 ENST00000006015.3,ENST00000517402.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27184780;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184781-27184855%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27184781-27184855&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.854441602462 0.538735763632 0.450310420198 27224400 27224474 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27224399;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184781-27184855%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27224400-27224474&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LRGWGGGRRWPSSWPARRQARRPRWAPAGSLCAR Same 578765 chr7:27184781-27184855+ 2891 2891 -2 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.746666666667 0.902406417112 -0.886324 0.9519 -0.468048 -0.418276 -0.0344670906642 0.299408903576 63330 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -22.26828 0.8341 -17.383512 -4.884768 -0.00283185477923 0.159608847463 36811 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000520360.5,ENST00000006015.3 NC,AntiCDS not annotated putative regulatory region 2898 492602 chr12:89352621-89352752+ NoOverlap chr12 89352621 89352752 + 4.3006068143 44 0.993802756334 0.580934113738 3.71967270056 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;89352620;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89352621-89352752%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A89352621-89352752&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.608295313655 0.538345716765 0.872880534412 89746398 89746529 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;89746397;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89352621-89352752%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A89746398-89746529&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IVNEFVIHKNGKEFPLRISPSANKLQQRARREEGERRGGGSGGGAGHINQGTSVVSCFLLLR Same 494584 chr12:89352621-89352752+ 3150 3150 -252 0 1997 89351989 89353104 Best 2898 2898;3067;8028;9679;12637;22392;31672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:89351989-89353104&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.769679300292 0.920834090909 0.9908 -2.01979545455 2.94062954545 0.241890077913 0.701261296175 7220 3934 3934;7220;23441;23638;59195;70262;73002 -7.18267727273 0.748 -10.2842227273 3.10154545455 0.0353126520388 0.602405820519 22214 3920 3920;22214;30464;33580;34681;56829;66039 0.0 0.0 ENST00000611513.1,ENST00000279488.7 NC,AntiUTR5 not annotated putative regulatory region 2901 595947 chrX:153485780-153485842+ NoOverlap chrX 153485780 153485842 + 4.5386095643 21 0.599794366514 -6.31628559317 10.8548951575 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;153485779;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153485780-153485842%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A153485780-153485842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.113637956066 0.538072311123 1.02650277598 152751238 152751300 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;152751237;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153485780-153485842%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A152751238-152751300&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LETLDLSYNRLVHVPRFLPRGLR Same 596588 chrX:153485780-153485842+ 2881 2881 20 0 1397 153481540 153486067 2093 2093;2101;2242;2901;9240;10410;14641;25631 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:153481540-153486067&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.698412698413 0.663157894737 2.06925238095 0.7505 -14.7419 16.811152381 0.498607910464 1.01928641014 3156 1899 1899;2169;2617;3156;4527;4610;7126;15622 24.0917761905 0.8828 -24.2118952381 48.3036714286 0.96851760158 0.876429738448 1593 550 550;891;987;1399;1497;1593;2015;2812 0.0 0.199874354537 chr9:92500727-92501053- ENST00000370210.3 AntiUTR5intron pseudogene unitary pseudogene ENSG00000224963 2903 558843 chr4:41748331-41748378+ NoOverlap chr4 41748331 41748378 + 9.49858746678 16 0.860593575952 3.05576872826 6.44281873852 ENST00000226382.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41748330;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748331-41748378%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41748331-41748378&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.604689368533 0.537935136111 0.905108942555 41750348 41750395 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41750347;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748331-41748378%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41750348-41750395&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CNQGFLYTGGKAASSAEKAEGPYLRR Same 559826 chr4:41748331-41748378+ 2750 2750 153 0 2000 41745545 41752242 Best 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.604166666667 0.914285714286 7.7813125 0.9887 4.04355 3.7377625 0.367598460313 0.588631683962 4434 Best 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 0.62484375 0.8548 -6.19053125 6.815375 0.105491180301 0.648502996026 11012 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0 ENST00000508038.1,ENST00000226382.3 NC,AntiCDS not annotated putative regulatory region 2908 573465 chr6:167999232-167999294+ NoOverlap chr6 167999232 167999294 + 11.4780856825 21 0.428062067888 4.38620963551 7.091876047 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;167999231;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167999232-167999294%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A167999232-167999294&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.424132885579 0.537586800942 0.971135027536 168399912 168399974 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;168399911;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167999232-167999294%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A168399912-168399974&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLQELKRNIRVHCRIRPLLPFDSESDDPVLQSR Same 574493 chr6:167999232-167999294+ 3121 3121 -213 0 327 167976938 168002143 446 446;1208;2908;3125;34549;35422;36527;37043;41869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:167976938-168002143&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.412698412698 1.14545454545 20.3980333333 0.6679 3.40388571429 16.994147619 0.680067096802 1.01933639389 2163 1167 1167;2159;2163;3104;6372;25026;25456;26766;27130 25.430452381 0.304 4.06275714286 21.3676952381 0.74135913507 1.02264016982 2661 139 139;2661;3543;3691;4447;13096;13690;18631;40134 0.0 0.0 ENST00000443060.6,ENST00000515361.5 UTR5,NCintron pseudo-exon KIF25 has 8 exons upstream that are coding as part of this locus in other mammals. At least two of these exons are clearly pseudogenic. This suggests the locus may be a pseudogene, although it has been maintained as coding due to published experimental support for its functionality. 2915 512289 chr16:72425907-72426035+ NoOverlap chr16 72425907 72426035 + 4.28170936884 43 0.840240169907 0.541058123112 3.74065124573 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72425906;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425907-72426035%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72425907-72426035&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.615135048403 0.536878900886 0.871116135527 72459806 72459934 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72459805;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425907-72426035%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72459806-72459934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QQRVYDTGPCMRARQCGKAKGDYPDPQERTASSNRRRKCQDYSLGCSNYEPFLGPWDSATWGLGVFHTTEAQS Same 513933 chr16:72425907-72426035+ 2840 2840 75 0 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.589147286822 0.632352941176 -1.53406511628 0.9978 -2.62674651163 1.09268139535 0.0165140907239 0.490193740316 33993 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -6.58439767442 0.6554 -6.83614651163 0.251748837209 -0.00939159053355 0.480264255489 40556 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000564508.2,ENST00000561611.2,ENST00000624829.3 NC,AntiNC,AntiNCintron not annotated potentially spurious 2918 547261 chr21:8437798-8438952- NoOverlap chr21 8437798 8438952 - 0.648592458849 385 0.172884955893 0.223294017183 0.425298441666 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8437797;1155;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437798-8438952-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8437798-8438952&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.594487948145 0.536469334111 0.650820161461 153972 155126 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153971;1155;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437798-8438952-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153972-155126&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPTTRPSFSFSLSLSLPRLPPEFSGSRGRRGRAANERASERTGTRAPPAHAPRRGGGVGVRREARGGGGAAAGLALRAPLMILPQVHLRKPCYDFYFL*IVKFDRLLSAPPGPWADPGGADPRASLNHPIGSSDGRCVQRAGT*STQAYDPHLLGIPRSWGIIAIPDPHHEWGSTGYPRLPA*GRHTLSQSV*RACSPGHLRASQTCYCSISGG*TPLVPLRSWGTPTARGSRN*LACQSLVRYRN*PDKSLHQLRTAMHHHPRNRERAINLSILSVSGPGEVSRVESN*AAGSTPGGALPSIPLSFSFATILPPEPKDFGFPEAARRVMGITPPHRRSASFMVGTTTVSDRLRTSDFRS*LMKTFLANAFALVRLAPVQEFHL*RRNTNAPGRPS Same 548664 chr21:8437798-8438952- 1374 1374 1544 296 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.602597402597 1.15863870005 -3.0611038961 0.2844 -3.30279350649 0.24168961039 0.0459610681098 0.381448648908 24067 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -4.86757038961 0.2274 -4.71574545455 -0.151824935065 0.0757046869087 0.267330399896 14369 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0233719777594 chr2:235670100-235671057+ ENST00000627981.1 NC not annotated SSU-rRNA_Hsa 2929 510872 chr16:21338456-21338497+ NoOverlap chr16 21338456 21338497 + 10.9868712867 14 0.933104448005 2.69931438565 8.28755690104 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;21338455;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A21338456-21338497%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A21338456-21338497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.559632362142 0.5355957524 0.972932555689 21349777 21349818 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;21349776;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A21338456-21338497%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A21349777-21349818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLSTLPQEYQLMIGVSNWMLWAAYFFTFLSLYFIIIIFMCIIFFVK Same 512510 chr16:21338456-21338497+ 2691 2691 238 0 20 21338456 21339031 20 20;2929;4756 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:21338456-21339031&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.47619047619 0.0 10.7230928571 0.84 -0.248535714286 10.9716285714 0.437967229577 1.00681146343 3625 3325 3325;3625;4234 15.9932642857 0.4179 1.47561428571 14.51765 0.486824222555 0.871774186766 3580 3279 3279;3580;3652 0.0 0.367192240278 chr16:2317648-2317764- pseudogene ATP-binding cassette, sub-family A (ABC1), member 15 (Abca15) unprocessed pseudogene (ENSG00000189149) 2936 485955 chr11:111473319-111473375+ NoOverlap chr11 111473319 111473375 + 5.36336308443 19 0.882552111568 -3.11815269056 8.48151577499 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111473318;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111473319-111473375%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111473319-111473375&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.349032845873 0.535118830993 1.05042922694 111344044 111344100 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111344043;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111473319-111473375%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111344044-111344100&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLLLFTSMEHFLKSILAAEQQILR Same 487913 chr11:111473319-111473375+ 2907 2907 29 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.438596491228 0.395833333333 6.49555263158 0.9675 -3.72166315789 10.2172157895 0.561182227992 1.02976876561 2761 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 6.39078947368 0.3729 -5.57592105263 11.9667105263 0.323605872095 0.862571339382 4414 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000356018.6 AntiCDSintron pseudogene unitary pseudogene ENSG00000255093 2943 501843 chr14:66488158-66488196+ NoOverlap chr14 66488158 66488196 + 9.0951614953 13 1.0 -1.39076921115 10.4859307064 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;66488157;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A66488158-66488196%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A66488158-66488196&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.40239759591 0.534397194725 1.04154184654 66954876 66954914 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;66954875;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A66488158-66488196%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A66954876-66954914&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EVCMFYDASLSSSLQIMRQIMAGKGCEESSVMELLK Same 503743 chr14:66488158-66488196+ 2862 2862 81 0 255 66486676 66492148 330 330;1499;2685;2943;57197 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:66486676-66492148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.512820512821 0.0 8.12715384615 1.0 -3.72620769231 11.8533615385 0.542320607692 1.02973276581 2857 675 675;2288;2597;2857;39601 10.3523538462 0.3844 -2.61499230769 12.9673461538 0.29341012892 0.837398949465 4700 2915 2915;4165;4450;4700;22191 0.0 0.0 ENST00000359454.10,ENST00000556361.1 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000196553 2944 585619 chr8:144051114-144051191+ NoOverlap chr8 144051114 144051191 + 6.24885373763 26 0.573581938013 -0.516826904737 6.76568064237 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144051113;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144051114-144051191%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144051114-144051191&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.366453656995 0.534344299535 1.01869033696 145106015 145106092 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145106014;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144051114-144051191%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145106015-145106092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HWDDPQPDSRPQEVEQVTFSTALEGLTDHRAVRLQLRVSVSS Same 586557 chr8:144051114-144051191+ 3169 3169 -225 0 591 144049161 144051191 902 902;1476;2944;3502;6411;8419;8554;19953;27554 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144049161-144051191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.692307692308 0.65 15.3611576923 0.8512 3.24770384615 12.1134538462 0.907444853608 1.05338924389 1275 822 822;1234;1275;2096;2721;3466;4144;4232;11683 16.1167115385 0.5618 -0.816284615385 16.9329961538 0.913957004494 0.998351235346 2036 1010 1010;1721;1924;2036;2359;2452;2682;3550;3684 0.0 0.197025073628 chr16:68361206-68361307- ENST00000528912.1 NC pseudogene unitary pseudogene (ENSG00000204791) 2951 533640 chr2:61183560-61183655+ NoOverlap chr2 61183560 61183655 + 3.63961561956 32 0.827181563287 -2.64549062587 6.28510624543 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;61183559;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A61183560-61183655%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A61183560-61183655&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.343707929592 0.533378025811 1.02630424189 61410695 61410790 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;61410694;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A61183560-61183655%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A61410695-61410790&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STLSKKKGDGVILKDLMKTAGTAKVREALGDYLKALK Same 535024 chr2:61183560-61183655+ 2892 2892 59 0 929 61177533 61186081 1432 1432;2951;3231;3681;13227 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:61177533-61186081&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.46875 0.0 0.06895625 0.9804 -5.404903125 5.473859375 0.22458442451 0.857569609141 7813 983 983;1603;2853;6337;7813 11.939503125 0.6748 -4.929709375 16.8692125 0.878021211868 1.02679016455 2201 374 374;473;1570;1744;2201 0.0 0.20901344916 chr14:77462642-77462759+ ENST00000484217.1,ENST00000357022.6,ENST00000471542.5 NC,UTR5intron,NCintron pseudogene AHSA2 has 4 pseudo exons upstream of the ATG, so switched to pseudogene AHSA2P (ENSG00000173209) 2964 530409 chr19:18236900-18237043- NoOverlap chr19 18236900 18237043 - 4.70197714601 48 0.600707955037 0.518454102431 4.18352304358 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;18236899;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18236900-18237043-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A18236900-18237043&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.462619886099 0.532392742779 0.931538694944 18347710 18347853 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;18347709;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18236900-18237043-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A18347710-18347853&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TCSCLSGFFQWFWELVDSGLAPVSPLGGGIIRRGFSGTPLLPSLPSRLVLPGEVEPSTHVVFTIEA Same 531872 chr19:18236900-18237043- 3149 3149 -185 0 692 18236900 18263956 1071 1071;2349;2964;6293;18798;31506 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:18236900-18263956&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 0.446280991736 5.08273958333 0.8747 -2.58535208333 7.66809166667 0.704788751483 1.04799977747 2068 1074 1074;2068;2444;2621;2710;8481 11.48551875 0.3716 2.50717083333 8.97834791667 0.672079276531 0.858841325746 2924 2208 2208;2924;3816;3839;4374;14268 0.0 0.116099491544 chr12:132582062-132582266+ ENST00000355502.7,ENST00000594617.7 UTR5,UTR5intron protein-coding gene protein-coding gene ENSG00000284797; found after looking at high-scoring intergenic PCCRs 2984 486548 chr11:125955867-125955911+ NoOverlap chr11 125955867 125955911 + 13.0261663834 15 0.868785636174 9.78222678502 3.2439395984 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125955866;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125955867-125955911%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125955867-125955911&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.649714754166 0.530684089874 0.487269723836 125825762 125825806 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125825761;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125955867-125955911%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125825762-125825806&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPSVLCPHMLFIGLETPTTTPGLDPAQETTDSPVNVTITVTATP Same 488510 chr11:125955867-125955911+ 2991 2991 -7 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488888888889 0.401785714286 12.4442666667 0.9752 14.7073466667 -2.26308 0.272072807363 0.082850181261 6290 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 29.42598 0.5732 31.4333933333 -2.00741333333 0.367998156059 0.241096341669 4132 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0 ENST00000524962.2,ENST00000392693.7 NC,AntiUTR3 protein-coding gene protein-coding gene ENSG00000283703 2995 555462 chr3:44421725-44421772- NoOverlap chr3 44421725 44421772 - 7.9928124994 16 0.776368543526 -1.09024992678 9.08306242619 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;44421724;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A44421725-44421772-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A44421725-44421772&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.470530202339 0.530088455622 1.04414514698 44463217 44463264 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;44463216;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A44421725-44421772-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A44463217-44463264&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQFGQGQEPLDMFFWVNEISGEITYPPQK None NA NA 0 2076 44421325 44421772 Best 2995 2995;10342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:44421325-44421772&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.479166666667 0.727272727273 18.113875 0.9979 -3.72885 21.842725 0.939330912028 0.969798901942 1145 Best 1145 1145;3103 18.113875 0.3119 -3.72885 21.842725 0.544267367739 1.03049689294 3371 Best 3371 3371;6913 0.0 0.0 ENST00000416124.1 NC pseudogene unitary pseudogene ENSG00000225873 3018 500741 chr14:22464221-22464286+ NoOverlap chr14 22464221 22464286 + 6.65470451184 22 0.813572206385 1.4165363366 5.23816817525 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22464220;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22464221-22464286%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22464221-22464286&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.610641896165 0.528544481933 0.886378575346 22933213 22933278 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22933212;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22464221-22464286%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22933213-22933278&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHPLHSFSAIVHTEKVNMMSLTVLGLRMLFAKTVAVNFLLTAK None NA NA 0 391 22462955 22464286 547 547;1170;3018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22462955-22464286&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.488888888889 13.3369818182 0.9702 6.30911363636 7.02786818182 0.830090508486 0.878794773902 1560 485 485;953;1560 20.7137954545 0.4604 5.54941818182 15.1643772727 0.83415376466 0.926016747616 2374 1794 1794;2374;2534 0.0 0.0 ENST00000390477.2,ENST00000611204.4,ENST00000514473.2 NC,NCintron,AntiNCintron immunoglobulin segment overlaps an immunoglobulin region 3023 548082 chr22:21469741-21469818+ NoOverlap chr22 21469741 21469818 + 9.71474614969 26 0.412656184892 4.38477310997 5.32997303972 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21469740;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21469741-21469818%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21469741-21469818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.412424327032 0.528174311684 0.910512530818 21824030 21824107 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21824029;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21469741-21469818%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21824030-21824107&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRANGLLPT Same 549502 chr22:21469741-21469818+ 3388 3388 -365 0 857 21467445 21469818 1328 1328;2227;3023;6657;7795;18550;21659 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21467445-21469818&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.705128205128 1.15322580645 16.6724269231 0.7881 3.50160769231 13.1708192308 0.888686578451 1.05130253084 1331 1035 1035;1287;1331;1719;1904;4183;5351 15.3469076923 0.4232 -0.0992 15.4461076923 0.801468868975 0.97004839281 2467 2446 2446;2467;2733;2842;3549;4935;9390 0.546902413145 chr22:18530255-18530459+ 0.642009170255 chr22:18530255-18530459+ ENST00000415764.5 NC protein-coding gene protein coding gene ENSG00000206140 3027 485676 chr11:85663820-85663888+ NoOverlap chr11 85663820 85663888 + 6.05199573869 23 0.944311204434 0.577326105989 5.4746696327 ENST00000527447.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;85663819;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663820-85663888%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A85663820-85663888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.585415551298 0.527438699626 0.91833293599 85374864 85374932 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;85374863;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663820-85663888%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A85374864-85374932&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADYLTLHFKRRRRLPGARRAELHRHLILVHMETDSSR Same 487635 chr11:85663820-85663888+ 3186 3186 -159 0 640 85662411 85665175 984 984;2049;2813;3027;18118;20011;21291;24329;58708;71875 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:85662411-85665175&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.594202898551 1.2075 -0.86867826087 0.9652 -6.29281304348 5.42413478261 0.0932671168134 0.791910795134 16615 2447 2447;10858;11498;16615;27666;29218;29965;35821;36919;48364 -13.924673913 0.8718 -19.6148869565 5.69021304348 -0.0367964912251 0.570836191782 62812 5807 5807;12876;35731;45741;53410;58313;62812;66127;69825;72999 0.0 0.0 ENST00000527447.1,ENST00000260058.9,ENST00000534224.1,ENST00000531515.5 AntiCDS,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 3030 485946 chr11:111462672-111462710+ NoOverlap chr11 111462672 111462710 + 5.9826308443 13 0.866353269832 -5.5566538664 11.5392847107 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111462671;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111462672-111462710%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111462672-111462710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.155483485697 0.527178359601 1.0313735271 111333397 111333435 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111333396;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111462672-111462710%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111333397-111333435&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIVFSSPPYPWWWSLPCGLFSAICSREEWEQEAQVVLGMQK Same 487904 chr11:111462672-111462710+ 2900 2900 130 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.615384615385 0.0 10.1912 0.9792 -11.4898538462 21.6810538462 0.655485709849 0.956298597886 2277 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 10.7198 0.4087 -11.6661692308 22.3859692308 0.461248055841 1.04703624873 3682 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 pseudogene unitary pseudogene ENSG00000255093 3037 552896 chr3:88059467-88059508+ NoOverlap chr3 88059467 88059508 + 14.500714268 14 0.847282259207 10.4736855541 4.02702871391 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88059466;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88059467-88059508%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88059467-88059508&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.615602490251 0.526687670767 0.517656584653 88108617 88108658 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88108616;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88059467-88059508%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88108617-88108658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGAGSGNCGGGVGISSRDYCRRFCQVR Same 553838 chr3:88059467-88059508+ 3055 3055 -18 0 234 88059269 88059508 300 300;3037;8717 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88059269-88059508&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.9 5.57437142857 0.9053 2.81821428571 2.75615714286 0.119304706991 0.48805209303 14011 1610 1610;14011;70294 9.47343571429 0.479 3.03329285714 6.44014285714 0.226409234408 0.600958092362 5623 2728 2728;5623;47806 0.0 0.0 ENST00000473136.4,ENST00000462901.5 NC,AntiUTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 3043 485917 chr11:111449437-111449472+ NoOverlap chr11 111449437 111449472 + 12.7640501795 12 0.868128989598 -6.06592484067 18.8299750201 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111449436;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111449437-111449472%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111449437-111449472&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.492296751573 0.526295702683 0.982634441731 111320162 111320197 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111320161;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111449437-111449472%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111320162-111320197&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHWNQEGLCLTKAQWNDHCAHEVGECPSIMSLAFLPLHPPIQMSTIPATGLIPLPLSGNIEVSTLHSQAVPR Same 487875 chr11:111449437-111449472+ 2809 2809 234 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.0 21.8365833333 0.9383 -5.22685833333 27.0634416667 0.664463340623 0.968289219032 2227 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 34.4091666667 0.6265 -8.09861666667 42.5077833333 0.954354892276 1.00241788977 1775 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000531398.1,ENST00000525890.1 AntiUTR5intron,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 3047 497197 chr12:120216252-120216341- NoOverlap chr12 120216252 120216341 - 5.16058322986 30 0.778488848198 0.496449940403 4.66413328946 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;120216251;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A120216252-120216341-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A120216252-120216341&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.574138453643 0.525675089727 0.895772311819 120654055 120654144 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;120654054;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A120216252-120216341-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A120654055-120654144&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TDAAASSSSPLPSLLASSPLGPSAYTCGSSGVQSAGEEPHDEGVQGPALPIPAPHTMRSVGCQTDEDPLFPPMQAGLKGAPPFLSPVLMPEPSPTLHTHTCTHTYTDTLHPSIYKPQHSNHSPAVNLDPGLPPLR Same 499205 chr12:120216252-120216341- 2999 2999 48 0 288 120216252 120219548 378 378;1189;3047;10568;22491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:120216252-120219548&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.655555555556 0.321428571429 2.18422 0.9259 -3.15534333333 5.33956333333 0.289026139084 0.849482290503 5885 479 479;873;2418;4055;5885 13.6135933333 0.7952 -0.744686666667 14.35828 0.800954547296 0.96487218552 2468 428 428;560;1751;2468;3435 0.0 0.0 ENST00000323871.9,ENST00000228307.11,ENST00000538144.5 NC,CDSintron,NCintron coding exon(s) PXN 2 cassette exons 3059 526659 chr19:1526706-1526774+ NoOverlap chr19 1526706 1526774 + 8.17255220724 23 0.657888085026 3.84143039973 4.33112180751 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;1526705;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1526706-1526774%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A1526706-1526774&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.620479360671 0.524794466978 0.794107513672 1526705 1526773 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;1526704;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1526706-1526774%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A1526705-1526773&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EVGTDPPPCAMPLPLPGNFFLNKNMEVKIGDLGLAAKVGPGGR Same 528104 chr19:1526706-1526774+ 3119 3119 -60 0 61 1524154 1533821 68 68;129;412;744;947;2039;3059;9713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:1524154-1533821&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.536231884058 0.214285714286 21.1999304348 0.9382 10.4178304348 10.7821 0.955916528493 0.995062559045 1057 205 205;265;523;631;1057;1237;1482;2663 44.154126087 0.9064 13.1840521739 30.970073913 0.991058096143 1.04320007129 1261 449 449;648;739;1129;1230;1261;1334;1921 0.0 0.284006020341 chr5:58458084-58458171- ENST00000334770.8 UTR5 pseudo-exon PLK5 pseudo exons 3067 492600 chr12:89352498-89352596+ NoOverlap chr12 89352498 89352596 + 5.25700001915 33 1.0 1.74558792331 3.51141209584 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;89352497;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89352498-89352596%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A89352498-89352596&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.659424726134 0.523996944838 0.792490538123 89746275 89746373 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;89746274;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89352498-89352596%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A89746275-89746373&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLLNGYKQRASQWIHSPGQPMSVLRKGLLPWGRAGWNR Same 494582 chr12:89352498-89352596+ 3477 3477 -410 0 1997 89351989 89353104 2898 2898;3067;8028;9679;12637;22392;31672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:89351989-89353104&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.626262626263 0.856216216216 -1.48058787879 0.9929 -4.34313939394 2.86255151515 0.0478136969206 0.62468073224 23638 3934 3934;7220;23441;23638;59195;70262;73002 -11.4385818182 0.8282 -18.1226666667 6.68408484848 0.0107221945217 0.687238892705 30464 3920 3920;22214;30464;33580;34681;56829;66039 0.0 0.0 ENST00000611513.1,ENST00000279488.7 NC,AntiUTR5 not annotated putative regulatory region 3075 585770 chr8:8714879-8714917- NoOverlap chr8 8714879 8714917 - 4.14395386439 13 0.646170278947 -12.4460926423 16.5900465067 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;8714878;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A8714879-8714917-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A8714879-8714917&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0774696058244 0.523603868655 0.924656210944 8572389 8572427 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;8572388;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A8714879-8714917-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A8572389-8572427&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSSVTCALHPSSVPCGNGEERVSWEHLHDGTCTCQDGSDK Same 586707 chr8:8714879-8714917- 2043 2043 1032 0 139 8702390 8719546 167 167;2129;3075;3753;6028;26012 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:8702390-8719546&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.564102564103 0.666666666667 4.11309230769 0.7702 -16.9488692308 21.0619615385 0.363312247848 0.949158598474 4483 1679 1679;1680;2137;2318;4483;35378 6.92326153846 0.3062 -16.4477461538 23.3710076923 0.316098321776 1.06551177601 4475 2793 2793;3236;3426;3823;4475;30167 0.0 0.0 pseudogene unitary pseudogene ENSG00000284717 3095 558850 chr4:41750262-41750303+ NoOverlap chr4 41750262 41750303 + 9.81004270485 14 0.934606371732 1.1147071038 8.69533560106 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41750261;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41750262-41750303%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41750262-41750303&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.517262920382 0.52207850681 1.00910894863 41752279 41752320 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41752278;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41750262-41750303%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41752279-41752320&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FDASAGEWMGSRSPLPPCFIAH Same 559833 chr4:41750262-41750303+ 2889 2889 206 0 2000 41745545 41752242 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.646153846154 5.60762857143 0.9953 -1.24077857143 6.84840714286 0.314822485364 0.826803913355 5295 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 -3.66662857143 0.6923 -10.39705 6.73042142857 0.0253996463656 0.622656366884 25193 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0 ENST00000508038.1 NCintron not annotated putative regulatory region 3096 510851 chr16:20718348-20718494+ NoOverlap chr16 20718348 20718494 + 5.18223675325 49 0.542284462423 1.31130205612 3.87093469713 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20718347;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20718348-20718494%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20718348-20718494&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.470370412981 0.521955820784 0.906033436805 20729670 20729816 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20729669;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20718348-20718494%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20729670-20729816&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGHLTPPSWGPSIFCRSASEEHSCVETGSQEPVAIYFTSGTTGSPKMAQHSQSSFSIGFTVCGR Same 512489 chr16:20718348-20718494+ 3284 3284 -188 0 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.537414965986 0.283055198973 12.8315755102 0.9432 4.01439183673 8.81718367347 1.05019525336 1.03996891486 259 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 30.627577551 0.7311 8.89138367347 21.7361938776 1.00604040612 1.03971867872 1014 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.873460050564 chr12:7317137-7317280+ 0.88600641122 chr12:7317137-7317280+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 3107 539878 chr2:110399972-110400097- NoOverlap chr2 110399972 110400097 - 5.25701426041 42 0.343297474632 -2.15745955564 7.41447381604 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110399971;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110399972-110400097-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110399972-110400097&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.161979830578 0.521235657515 1.06265249764 111157549 111157674 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111157548;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110399972-110400097-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111157549-111157674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NVLFHITLYLSWVGEHPSTVLGQCNTDISGLCLSQLTLIDLIICGSLEAINIHSIRWSRALRPVFLINFPESRQVSI Same 541238 chr2:110399972-110400097- 3457 3457 -350 0 1194 110397399 110408025 1806 1806;2085;2438;3107;4591;8217;15827;15899 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110397399-110408025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.484126984127 0.407327586207 17.1554190476 0.7791 0.610266666667 16.545152381 1.08029837843 0.969602794014 48 Best 48 48;279;480;726;1001;1821;1905;2030 42.2008190476 0.7949 3.2737952381 38.9270238095 0.988148346428 0.976494286182 1304 350 350;364;877;881;1131;1304;1506;1758 0.0 0.0 ENST00000488671.1 NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000184115) 3111 569174 chr5:140591081-140591131- NoOverlap chr5 140591081 140591131 - 6.21600599061 17 0.829668924104 -2.71858234441 8.93458833502 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140591080;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140591081-140591131-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140591081-140591131&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.371323240818 0.520800322252 1.05045849083 139970666 139970716 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139970665;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140591081-140591131-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139970666-139970716&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVEDATEVEVSDSKAASELYLQATAGEGR Same 570187 chr5:140591081-140591131- 3036 3036 75 0 59 140590883 140594367 66 66;3111;5039;6920;27936 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140590883-140594367&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.549019607843 0.0 9.0483 0.985 -3.77503529412 12.8233352941 0.703285709383 1.05139318493 2076 89 89;1580;2076;2463;3172 9.19556470588 0.3735 -3.67272352941 12.8682882353 0.362362420194 0.870050953974 4161 1915 1915;3790;4044;4161;4734 0.0 0.0 ENST00000510304.2,ENST00000507279.5 NC,NCintron pseudogene unitary pseudogene ENSG00000283602 3119 473169 chr1:90833857-90834048- NoOverlap chr1 90833857 90834048 - 2.95271243341 64 0.941954203861 -1.61537032016 4.56808275357 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90833856;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90833857-90834048-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90833857-90834048&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.423320517754 0.52007801671 0.982252696142 91299414 91299605 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91299413;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90833857-90834048-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91299414-91299605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGLPQPTDGPGKEERRFARAFGPTEGIFWLLEPY*IRANYKENCQSRENCYMISEKDKNQVKSVNHSGSFDLLIR Same 475048 chr1:90833857-90834048- 2897 2897 222 29 2174 90832085 90840997 Best 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.453125 0.311351351351 -0.741578125 0.9947 -1.894015625 1.1524375 0.126653850954 0.519741075498 13380 Best 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -4.5129625 0.9219 -6.655775 2.1428125 0.129415368967 0.591375844678 9186 Best 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 3125 573462 chr6:167993700-167993750+ NoOverlap chr6 167993700 167993750 + 7.22742942502 17 0.581059065879 -8.33192945579 15.5593588808 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;167993699;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167993700-167993750%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A167993700-167993750&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.255721875701 0.519897896806 0.949355256108 168394380 168394430 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;168394379;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167993700-167993750%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A168394380-168394430&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNQDIQAFHSSSRALLR Same 574490 chr6:167993700-167993750+ 2653 2653 472 0 327 167976938 168002143 446 446;1208;2908;3125;34549;35422;36527;37043;41869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:167976938-168002143&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.450980392157 1.17692307692 9.35151176471 0.6858 -5.69686470588 15.0483764706 0.505907480224 1.03754135179 3104 1167 1167;2159;2163;3104;6372;25026;25456;26766;27130 8.11934705882 0.2823 -7.45542941176 15.5747764706 0.320192982182 0.953333084855 4447 139 139;2661;3543;3691;4447;13096;13690;18631;40134 0.0 0.0 ENST00000456585.5 AntiNC pseudo-exon KIF25 has 8 exons upstream that are coding as part of this locus in other mammals. At least two of these exons are clearly pseudogenic. This suggests the locus may be a pseudogene, although it has been maintained as coding due to published experimental support for its functionality. 3126 527290 chr19:12791282-12791410+ NoOverlap chr19 12791282 12791410 + 4.72561169502 43 0.788908465386 1.56808139418 3.15753030084 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12791281;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12791282-12791410%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12791282-12791410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.663966486959 0.51980435742 0.806755306272 12902096 12902224 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12902095;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12791282-12791410%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12902096-12902224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFEPLPLQPRRATRPVAAVYKDTRFLTVTRAASSPSPRSRRGARGPGSGDGQSER Same 528736 chr19:12791282-12791410+ 3142 3142 -16 0 96 12775496 12806530 113 113;1182;3126;12882;12916;19147;21814;28171;30495;34266;70783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12775496-12806530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.759689922481 0.827984595635 1.70635348837 0.9238 -2.62679534884 4.33314883721 0.308045797338 0.827659718227 5434 845 845;1545;3224;5434;8474;11177;11868;16562;28502;47510;67609 -2.8546 0.4859 -9.59645348837 6.74185348837 0.192393951136 0.77167477751 6466 40 40;3058;6466;7449;7608;8225;15095;31105;55016;67420;71961 0.0 0.00107439813792 chr12:113469122-113469345- ENST00000589765.1 AntiNCintron not annotated putative regulatory region 3141 491315 chr12:49033104-49033145+ NoOverlap chr12 49033104 49033145 + 5.68906433242 14 0.823442217354 -5.57858578861 11.267650121 ENST00000301067.11 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;49033103;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49033104-49033145%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A49033104-49033145&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.162310828892 0.518283960953 1.03425233045 49426887 49426928 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49426886;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49033104-49033145%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49426887-49426928&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MGQPCHGPLLLVLLLLLLLLGCDQPVSHK Same 493292 chr12:49033104-49033145+ 3017 3017 124 0 27 49020566 49033910 27 27;1869;2293;3141;4665;5179;14171;29832;59889;70464 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:49020566-49033910&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.0 5.24982857143 0.8943 -8.48943571429 13.7392642857 0.365733920755 1.0516137374 4455 391 391;2014;2802;4299;4455;6825;32787;42176;48473;48787 0.144257142857 0.6574 -22.7952428571 22.9395 0.402582960898 1.07912398023 3946 2210 2210;2935;3946;7899;19234;24986;25843;31483;36637;57651 0.0 0.0327740034542 chr15:41847649-41847860+ ENST00000301067.11 AntiCDS not annotated potentially spurious 3142 507791 chr15:90934942-90935040+ NoOverlap chr15 90934942 90935040 + 4.59718181148 33 0.750388295868 -0.325054478916 4.92223629039 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;90934941;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A90934942-90935040%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A90934942-90935040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.492494057053 0.518219369353 0.937085113978 91478172 91478270 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;91478171;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A90934942-90935040%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A91478172-91478270&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGPGPLLVLGLYNLLVVTLMTVDLVHFCCGRGR Same 509522 chr15:90934942-90935040+ 3181 3181 -39 0 295 90934338 90943589 390 390;3142;16923;17834 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:90934338-90943589&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.656565656566 0.5625 7.43123939394 0.9826 1.04201818182 6.38922121212 0.75580777646 0.93476243691 1842 1212 1212;1242;1842;27563 5.40276060606 0.4821 -7.74818181818 13.1509424242 0.60428072099 0.96921813056 3153 849 849;3153;3539;18232 0.0 0.0473997627474 chr15:90935544-90935705+ ENST00000394275.6,ENST00000461266.5,ENST00000438890.1 UTR5,NC,AntiNC coding exon(s) UNC45A 5' exons 3155 579483 chr7:134210926-134210967+ NoOverlap chr7 134210926 134210967 + 16.4704786113 14 0.848798352026 -3.45971417427 19.9301927856 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;134210925;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134210926-134210967%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A134210926-134210967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.626195734243 0.517216792693 1.03622245278 133895678 133895719 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;133895677;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134210926-134210967%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A133895678-133895719&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRLRPRSSQSTKV* Same 580526 chr7:134210926-134210967+ 2911 2911 244 0 334 134208697 134210967 457 457;654;903;1140;1971;3155;4173;9542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:134208697-134210967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.293706293706 21.6870428571 1.0 -8.53691428571 30.2239571429 0.734455473757 0.983757835358 1962 146 146;1038;1039;1252;1266;1962;1997;10575 20.0933857143 0.3821 -9.65670714286 29.7500928571 0.589844801512 1.04971962653 3198 15 15;2334;2668;2929;2944;3198;3972;9142 0.0 0.0 ENST00000285928.2 CDSintron coding exon(s) LRGUK alternative large final exon 3184 481630 chr10:100117406-100117438- NoOverlap chr10 100117406 100117438 - 6.85832735896 11 0.742827219321 -9.71341812611 16.5717454851 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100117405;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100117406-100117438-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100117406-100117438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.101764906559 0.514876392935 0.951538342788 101877163 101877195 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101877162;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100117406-100117438-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101877163-101877195&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VHEEIDHVIGCNQSCSVK Same 483546 chr10:100117406-100117438- 2590 2590 594 0 90 100105748 100122651 105 105;606;781;1442;2015;3184;14859;17791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100105748-100122651&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.363636363636 0.0 -1.82767272727 0.7431 -16.1667909091 14.3391181818 0.0991373956977 1.05860824262 15939 2120 2120;2485;2770;2888;8530;10411;15939;19257 10.5818181818 0.5613 -11.0052727273 21.5870909091 0.532566270677 1.02924102553 3409 209 209;267;1101;3020;3409;3819;4117;17036 0.0 0.272836817074 chr10:133537063-133537250+ pseudogene unitary pseudogene ENSG00000283232 3185 510474 chr16:3004608-3004832+ NoOverlap chr16 3004608 3004832 + 4.98744130303 75 0.45656010783 2.20872268875 2.77871861428 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3004607;225;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3004608-3004832%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3004608-3004832&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.520193362485 0.514611532198 0.8301370996 3054609 3054833 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3054608;225;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3004608-3004832%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3054609-3054833&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APPALLPLLPLPVSAVASAPGPVGALVRPPLVSEPPPHPLPPLPARPSPFSLLTAPETRDPWLLSAFPLPPPVPLSPHFFLSPPC Same 512116 chr16:3004608-3004832+ 3063 3063 122 0 839 3004217 3004832 1301 1301;3185 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3004217-3004832&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 1.06100795756 9.56336533333 0.5767 5.287488 4.27587733333 0.786036777758 0.880587596209 1725 1292 1292;1725 3.55846 0.4522 1.93548133333 1.62297866667 0.254321731674 0.588174012119 5156 3294 3294;5156 0.0 0.258896477287 chr8:28716060-28718207+ ENST00000570515.1 AntiNCintron not annotated putative regulatory region 3192 553609 chr3:141729293-141729376+ NoOverlap chr3 141729293 141729376 + 5.2105428949 28 0.859542338336 0.661575148215 4.54896774669 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;141729292;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141729293-141729376%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A141729293-141729376&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.599782600578 0.514239499138 0.871426888008 141448135 141448218 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;141448134;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141729293-141729376%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A141448135-141448218&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGKLPVLKITVTPQISSDTFRSIWKNSKKSNTMHK Same 554558 chr3:141729293-141729376+ 3144 3144 48 0 225 141713327 141738361 281 281;1940;3192;3717;12103 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:141713327-141738361&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.369047619048 0.381818181818 8.623625 0.9525 0.161364285714 8.46226071429 0.786920565144 1.00867411388 1721 Best 1721 1721;2098;2147;3697;14992 11.126575 0.477 -1.12200357143 12.2485785714 0.678978259332 0.908076054447 2887 2737 2737;2887;3244;3826;36452 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 3195 588825 chr9:35341754-35341885+ NoOverlap chr9 35341754 35341885 + 3.79750681262 44 0.911370745681 -0.297345490618 4.09485230324 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35341753;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35341754-35341885%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35341754-35341885&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.533099653506 0.514193718968 0.910268850779 35341751 35341882 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35341750;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35341754-35341885%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35341751-35341882&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ACWQGLCVRECAGKGVCAPGTCEEGWCPMGGCRQEAAGEEEEQQQEQELPCFLPQSQSPESIELEFHIQLK Same 589768 chr9:35341754-35341885+ 3184 3184 11 0 424 35341754 35353800 597 597;674;681;729;1148;1380;3195 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35341754-35353800&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.659090909091 0.26902173913 0.124590909091 0.9959 -2.68829318182 2.81288409091 0.185199958021 0.67939612808 9444 613 613;676;680;821;951;1589;9444 -2.09164772727 0.3896 -4.42509090909 2.33344318182 0.0606449112361 0.587340788501 16707 210 210;564;1088;1576;2310;2740;16707 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron not annotated potentially spurious 3209 543330 chr20:36208346-36208375+ NoOverlap chr20 36208346 36208375 + 6.99793988466 10 0.919096665904 -5.85330994129 12.851249826 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;36208345;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36208346-36208375%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A36208346-36208375&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0885680365151 0.513128336459 1.01294519613 34796268 34796297 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;34796267;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36208346-36208375%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A34796268-34796297&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STNLAANTPGKGGR Same 544719 chr20:36208346-36208375+ 3072 3072 137 0 105 36205843 36208375 125 125;723;906;1185;1244;1425;3209;4167;4835;30161 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:36205843-36208375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.0 3.05982 0.9649 -14.13678 17.1966 0.25199219765 1.01578026166 6918 172 172;398;1291;1366;1423;1562;1733;1995;6918;10311 -3.82096 0.5404 -30.06961 26.24865 0.223929754507 1.07402075223 5668 1508 1508;2023;2148;2169;2610;3152;3488;3607;4506;5668 0.0 0.0 ENST00000202028.9,ENST00000479336.1 CDSintron,NCintron coding exon(s) EPB41L1 three consectutive cassette exons 3220 573701 chr6:9697744-9697779- NoOverlap chr6 9697744 9697779 - 14.6809584647 12 0.923427684952 2.24095836282 12.4400001019 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;9697743;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9697744-9697779-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A9697744-9697779&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.524444675808 0.512397420845 0.990902113962 9697977 9698012 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;9697976;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9697744-9697779-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A9697977-9698012&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTDNEETPVADAAKLYWMFVR Same 574730 chr6:9697744-9697779- 2914 2914 306 0 427 9697636 9705441 603 603;833;3220;7824 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:9697636-9705441&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.638888888889 0.830769230769 23.597175 0.9706 0.618133333333 22.9790416667 0.825043281488 0.985564494397 1581 557 557;715;1581;2780 38.8542583333 0.8229 1.177375 37.6768833333 1.03939652667 1.02151401284 489 Best 489 489;548;738;1712 0.0 0.0 ENST00000492094.6 NC redundant PhyloCSF signals are accounted for elsewhere on the list 3222 483063 chr10:130079554-130079598- NoOverlap chr10 130079554 130079598 - 14.1178599675 15 0.820654612039 11.8928133647 2.22504660288 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;130079553;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A130079554-130079598-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A130079554-130079598&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.652946431886 0.512241812597 0.360034719936 131877818 131877862 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131877817;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A130079554-130079598-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131877818-131877862&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSAQPCPRCIAGESVSALTFLL Same 484992 chr10:130079554-130079598- 3393 3393 -171 0 2252 130079554 130079598 Best 3222 3222 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:130079554-130079598&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.0 18.7249866667 0.8298 12.1374933333 6.58749333333 0.538328653913 0.713860919991 2885 Best 2885 2885 29.2859466667 0.552 15.1525466667 14.1334 0.811962200056 0.810145103382 2439 Best 2439 2439 0.0 0.0 ENST00000456581.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 3231 533641 chr2:61185980-61186081+ NoOverlap chr2 61185980 61186081 + 4.18993231128 34 0.79796695973 -0.775600028389 4.96553233967 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;61185979;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A61185980-61186081%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A61185980-61186081&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.474531742824 0.511662886444 0.946490278506 61413115 61413216 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;61413114;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A61185980-61186081%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A61413115-61413216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVQKFSKSTAVLETEKGGKFQMFDGNITGEYLGLVSR Same 535025 chr2:61185980-61186081+ 3208 3208 23 0 929 61177533 61186081 1432 1432;2951;3231;3681;13227 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:61177533-61186081&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.372549019608 0.0 5.8077 0.9861 -4.25001764706 10.0577176471 0.818489206184 1.07691324977 1603 983 983;1603;2853;6337;7813 22.5807911765 0.8057 -1.07091764706 23.6517088235 1.04047080701 1.05226941311 473 374 374;473;1570;1744;2201 0.0 0.196236665641 chr14:77468083-77468205+ ENST00000471542.5,ENST00000357022.6,ENST00000491217.1 NC,CDSintron,NCintron pseudogene AHSA2 has 4 pseudo exons upstream of the ATG, so switched to pseudogene AHSA2P (ENSG00000173209) 3243 588684 chr9:32552441-32552476+ NoOverlap chr9 32552441 32552476 + 20.4902248085 12 0.857385366598 9.30310849349 11.187116315 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;32552440;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A32552441-32552476%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A32552441-32552476&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.514105829185 0.511201707305 0.73064957689 32552439 32552474 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;32552438;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A32552441-32552476%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A32552439-32552474&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLTMKPVSRRTLDWIYSVVSPGDR Same 589630 chr9:32552441-32552476+ 3408 3408 -165 0 252 32552441 32552896 324 324;3243;45084 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:32552441-32552896&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 1.33333333333 25.6290166667 0.9931 12.9524833333 12.6765333333 0.89545091885 0.861484893546 1307 300 300;1307;57020 30.333175 0.5006 12.1816583333 18.1515166667 0.72627271821 0.885571522722 2723 138 138;2723;42711 0.0 0.0 ENST00000425533.1,ENST00000360538.6 NC,AntiUTR5 protein-coding gene protein-coding gene ENSG00000235453 3252 502607 chr14:95923183-95923212+ NoOverlap chr14 95923183 95923212 + 8.70507983863 10 0.987048142214 -3.92334004641 12.628419885 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;95923182;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A95923183-95923212%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A95923183-95923212&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.209454922096 0.510542386406 1.0211298009 96389520 96389549 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;96389519;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A95923183-95923212%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A96389520-96389549&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIHSTRNSTSLAGGPEECLEDQPLTPSVSGWVQK Same 504510 chr14:95923183-95923212+ 3080 3080 172 0 297 95922793 95923212 392 392;3252 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:95922793-95923212&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.555555555556 3.98 0.991 -8.15134 12.13134 0.234445289343 1.02659033032 7477 602 602;7477 -5.51137 0.5759 -19.38806 13.87669 0.0395948502133 0.848102715195 21132 1459 1459;21132 0.0 0.0 ENST00000503525.2 NC protein-coding gene protein-coding gene ENSG00000250366 3259 503446 chr14:23101714-23101767- NoOverlap chr14 23101714 23101767 - 5.99993328916 18 0.917321533023 -2.05798888206 8.05792217122 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23101713;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23101714-23101767-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23101714-23101767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.397592449016 0.510085481119 1.03671838175 23570923 23570976 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23570922;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23101714-23101767-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23570923-23570976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PHVGLAPQTSSVLAGVCAEWLGDCMAASDSSVTLPSIPHSGLGCHYLHLDKGSCSSDPMLEGCR Same 505285 chr14:23101714-23101767- 3313 3313 -54 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.0 10.3214555556 0.9746 0.453761111111 9.86769444444 0.705689165717 1.00073885429 2062 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 23.6118888889 0.7104 0.809288888889 22.8026 0.995225494238 1.03289673333 1191 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 3274 500683 chr14:21941611-21941646+ NoOverlap chr14 21941611 21941646 + 15.6490831474 12 0.922390071463 -1.03736672799 16.6864498754 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21941610;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21941611-21941646%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21941611-21941646&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.533281432227 0.5087572288 1.0162440253 22409802 22409837 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22409801;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21941611-21941646%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22409802-22409837&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSVQVSDSAVYFCALSDTVTGTAGGAEHK None NA NA 0 156 21941431 21941646 187 187;3274 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21941431-21941646&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 0.5 16.6109166667 0.9117 2.48755833333 14.1233583333 0.633620439764 1.01021465188 2377 333 333;2377 32.1519166667 0.7049 5.305375 26.8465416667 1.00236763294 1.02028778038 1075 595 595;1075 0.0 0.0 ENST00000390441.2 NC immunoglobulin segment overlaps an immunoglobulin region 3293 493925 chr12:132118961-132119104+ NoOverlap chr12 132118961 132119104 + 4.10759584152 48 0.365783232878 -2.92726872768 7.0348645692 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132118960;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132118961-132119104%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132118961-132119104&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.125108324765 0.507352131256 1.0697683338 132603506 132603649 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132603505;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132118961-132119104%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132603506-132603649&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAAPAGVRAAASLQVSQQQATEPQAQLSVQGRTQQPIAAPPPFLPGRRSPPGR Same 495916 chr12:132118961-132119104+ 3478 3478 -185 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.694444444444 0.650246305419 6.19286875 0.6656 -3.24769583333 9.44056458333 0.741588826425 1.08031693243 1919 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 13.1215020833 0.5464 -6.26638125 19.3878833333 1.04269483785 1.05750079777 434 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 1.0018204658 chr12:131982093-131982478+ 1.02472270945 chr12:131982093-131982478+ ENST00000475841.2,ENST00000332441.7 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 3328 510485 chr16:3144754-3144789+ NoOverlap chr16 3144754 3144789 + 8.3840917324 12 0.805862007579 -4.85600841045 13.2401001429 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3144753;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144754-3144789%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3144754-3144789&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.306860928686 0.504556015132 1.00541739137 3194755 3194790 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3194754;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144754-3144789%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3194755-3194790&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASLQANMLLLYPASLEPGAFLAGLRELCGR None NA NA 0 256 3144015 3150751 334 334;814;1899;3328;3506;5705;11798;14824;15461;50287;55094 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3144015-3150751&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.638888888889 0.272727272727 8.620125 0.9956 -11.2316166667 19.8517416667 0.600456143603 0.970466424808 2541 167 167;1186;1262;1661;1809;1880;2134;2541;2601;5815;43459 6.6385 0.6114 -15.94275 22.58125 0.508382594245 1.05625904433 3499 1889 1889;2882;2930;3314;3490;3499;6163;6623;16490;31726;59008 0.0 0.296714763932 chr17:49224246-49225124- ENST00000428155.1,ENST00000571356.5 UTR5,NC pseudogene extension CASP16P pseudogene extended (ENSG00000228146) 3336 483267 chr11:1108173-1108220+ NoOverlap chr11 1108173 1108220 + 12.1990376189 16 0.546066033417 -1.78095612675 13.9799937457 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1108172;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1108173-1108220%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1108173-1108220&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.477520640988 0.503948540506 1.00485318158 1102081 1102128 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1102080;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1108173-1108220%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1102081-1102128&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGGGEEVGCSVGVLAGCWAGWDAGEAPASCLSLCPKPGSPVYSSKCQDCVCTDK Same 485197 chr11:1108173-1108220+ 3500 3500 -164 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.75 26.46960625 0.9052 -1.83918125 28.3087875 0.700270822949 1.00062041059 2093 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 41.42051875 0.7792 -7.1019875 48.52250625 1.04224546198 0.977183584387 441 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.215939060713 chr11:1198874-1198996+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 3339 494109 chr12:3307745-3307795- NoOverlap chr12 3307745 3307795 - 9.90997060607 17 0.654864262024 3.65699989655 6.25297070952 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3307744;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3307745-3307795-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3307745-3307795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.53406242642 0.503589028613 0.894961845424 3416911 3416961 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3416910;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3307745-3307795-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3416911-3416961&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLIPGGDPLLSLLLVFLPVTYYLVELVAGVPAHVCYQRVSGCFLLLHSLSVSR Same 496104 chr12:3307745-3307795- 3493 3493 -154 0 531 3298233 3307795 799 799;1890;3339;6900;15956;21198;23499 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3298233-3307795&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.647058823529 0.421487603306 17.9272470588 0.9698 7.12587058824 10.8013764706 0.876222851582 0.972456293162 1376 197 197;419;1376;1520;1852;2555;9275 37.4689470588 0.7005 8.51002352941 28.9589235294 1.02428873161 1.03647027879 711 223 223;711;903;924;1207;1939;10886 0.906603042012 chr12:30978561-30978635+ 0.93612158587 chr12:30978561-30978635+ pseudogene tetraspanin 11 (TSPAN11) pseudogene (ENSG00000250770); single locus on multiple rows 3346 573550 chr6:2743890-2743925- NoOverlap chr6 2743890 2743925 - 9.69204157591 12 0.85784186567 -2.55188326041 12.2439248363 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;2743889;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A2743890-2743925-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A2743890-2743925&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.397971363698 0.503013931193 1.02575481118 2744124 2744159 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;2744123;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A2743890-2743925-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A2744124-2744159&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGHWQTPALEDVQVVK Same 574579 chr6:2743890-2743925- 3272 3272 74 0 505 2743890 2749408 749 749;1132;3346 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:2743890-2749408&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.375 12.23985 0.9638 -0.420066666667 12.6599166667 0.615480806451 1.02177891654 2460 869 869;2104;2460 4.38223333333 0.533 -10.060775 14.4430083333 0.265900729715 0.894431053025 4999 2194 2194;2807;4999 0.0 0.0 ENST00000274643.8 CDSintron coding exon(s) MYLK4 alternative first exon 3348 519791 chr17:1716190-1716261- NoOverlap chr17 1716190 1716261 - 7.94674585387 24 0.819537270161 6.30779576798 1.63895008589 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;1716189;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1716190-1716261-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A1716190-1716261&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.802620832826 0.502916949131 0.466973913127 1619484 1619555 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;1619483;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1716190-1716261-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A1619484-1619555&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASRRRQLIGAWSRCVLGAEKRQRRRPWGADAVICSPSCSNPHTQHQVGVSWRPGHAAGSR Same 521198 chr17:1716190-1716261- 3364 3364 -16 0 960 1713893 1724692 1472 1472;3348;6953;15387;36265;37604;43154 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:1713893-1724692&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.736111111111 1.04347826087 -0.451958333333 0.9763 0.275966666667 -0.727925 -0.0236430110923 0.270789854091 56587 5776 5776;16857;18965;26440;56587;71733;73726 -13.099 0.5627 -9.83933333333 -3.25966666667 -0.0433876645465 0.252140190882 67671 10479 10479;11209;21855;38681;45206;66911;67671 0.0 0.11604205492 chr16:67284275-67284457+ ENST00000571595.5 NC not annotated putative regulatory region 3356 552680 chr3:67927746-67927787+ NoOverlap chr3 67927746 67927787 + 7.70561411551 14 0.739193887672 -4.28377834388 11.9893924594 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;67927745;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A67927746-67927787%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A67927746-67927787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.324116331461 0.50190972058 1.02504004712 67978170 67978211 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;67978169;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A67927746-67927787%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A67978170-67978211&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CWNSPNEKQDHALIFQC*AMIVSGIWVVTLESTR Same 553621 chr3:67927746-67927787+ 3472 3472 -116 1 448 67927434 67927787 641 641;3356 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:67927434-67927787&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 -5.58280714286 0.1897 -8.09422142857 2.51141428571 0.0276317002536 0.478892735032 29637 Best 29637 29637;68757 -2.02216428571 0.1291 -9.41193571429 7.38977142857 0.00707110901538 0.653328561077 32030 Best 32030 32030;69503 0.0 0.620253862039 chr17:64375051-64375356- ENST00000482677.5 NCintron not annotated potentially spurious 3363 484447 chr11:57037804-57037848+ NoOverlap chr11 57037804 57037848 + 6.30774010817 15 0.8803255258 -3.36017991702 9.66792002519 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57037803;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57037804-57037848%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57037804-57037848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.30006492804 0.501352287355 1.05171478956 56805279 56805323 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;56805278;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57037804-57037848%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A56805279-56805323&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SISCIGCMVQLLVYGTLQQVTATSWLLWQ Same 486392 chr11:57037804-57037848+ 3310 3310 53 0 338 57037567 57038422 463 463;582;884;1044;1236;1826;3363;6311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57037567-57038422&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 14.02818 0.9548 0.98708 13.0411 0.752902139459 1.032190302 1855 346 346;643;688;1159;1835;1855;2138;3085 36.4610866667 0.9343 -19.0318066667 55.4928933333 0.969388529504 0.984309903164 1582 792 792;938;1237;1246;1582;1841;2263;2401 0.118662005616 chr11:56988914-56989843+ 0.284108081937 chr7:141918876-141919820+ pseudogene OR5AK4P olfactory receptor family 5 subfamily AK member 4 pseudogene (ENSG00000283307) 3366 527517 chr19:15398559-15398801+ NoOverlap chr19 15398559 15398801 + 3.60620376541 81 0.854946042403 1.16588519624 2.44031856917 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15398558;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15398559-15398801%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15398559-15398801&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.636156845425 0.501180602983 0.773329935625 15509370 15509612 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15509369;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15398559-15398801%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15509370-15509612&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPGSGAWAGAGRRGKGRRRPAATETSGRVPTSAGRPYLGHGVSFVWRAQGPGAGEAEEGPARARV*GGGGKRQCGSPEGRQTRPRGVK Same 528963 chr19:15398559-15398801+ 3070 3070 296 22 2369 15398227 15398985 Best 3366 3366;10120;48375;70640 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15398227-15398985&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.711934156379 0.671085335543 0.227882716049 0.9414 -2.10699259259 2.33487530864 0.285227223456 0.632845440595 5988 Best 5988 5988;14383;14592;72008 -4.80892962963 0.4374 -7.6544691358 2.84553950617 0.0851754830913 0.619584795601 13120 Best 13120 13120;33994;57525;64726 0.0 0.0341650486928 chr1:154429196-154429444+ ENST00000624704.1,ENST00000596750.2,ENST00000397410.9 NC,AntiNC,AntiCDSintron not annotated potentially spurious 3368 483229 chr11:1083074-1083151+ NoOverlap chr11 1083074 1083151 + 7.67843463329 26 0.560051293789 3.03951925269 4.63891538061 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1083073;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1083074-1083151%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1083074-1083151&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.500312534208 0.500974793694 0.856654209482 1081070 1081147 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1081069;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1083074-1083151%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1081070-1081147&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GALLSPEQPRPSLQVVVFKSDGSVLLNELQVNLPHVTGELRPR Same 485159 chr11:1083074-1083151+ 3565 3565 -197 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.602564102564 0.571428571429 15.3692846154 0.9186 1.80114615385 13.5681384615 0.96778948166 1.04932912048 980 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 16.7458692308 0.7295 -8.22270384615 24.9685730769 0.997930137166 1.05836890631 1141 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0851115565129 chr11:1168483-1168552+ 0.213995514223 chr11:1168483-1168552+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 3369 490588 chr12:7626187-7626249+ NoOverlap chr12 7626187 7626249 + 7.0072144199 21 0.452658884565 -6.39743806652 13.4046524864 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;7626186;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7626187-7626249%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A7626187-7626249&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.182789132807 0.50097148921 0.962817884068 7778783 7778845 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;7778782;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7626187-7626249%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A7778783-7778845&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATTISVTLFSLGSLPSLTRFLPK*IIIHVK Same 492564 chr12:7626187-7626249+ 3288 3288 81 3 1000 7620539 7637633 1528 1528;3369;23912;30341;31797;32931;38172;38567;44054;46877;50926 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:7620539-7637633&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.285714285714 0.0 -1.69816666667 0.107 -3.94409047619 2.24592380952 0.0198096465182 0.503264441164 32690 27370 27370;27482;29856;29976;30397;31757;32126;32399;32690;35677;37405 40.7319714286 0.6092 -5.89091904762 46.6228904762 0.97498078059 0.974564769107 1511 310 310;676;714;1056;1511;1634;1765;1772;2213;2416;4434 0.0 0.795972876575 chrM:4470-5511+ pseudogene mitochondrial protein pseudogene region (ENSG00000284591) 3374 468431 chr1:200929916-200929951+ NoOverlap chr1 200929916 200929951 + 12.6428248311 12 0.889402609293 0.612925002972 12.0298998281 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;200929915;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A200929916-200929951%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A200929916-200929951&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.492391521866 0.500607167364 1.01252169715 200899044 200899079 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;200899043;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A200929916-200929951%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A200899044-200899079&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TETILKDLQKHFHGAWLASLQDLTLVTLTLHSA Same 470300 chr1:200929916-200929951+ 3214 3214 160 0 74 200920454 200929951 83 83;3374;7261 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:200920454-200929951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 0.0 19.1038916667 0.9328 0.197966666667 18.905925 0.735074854092 0.99297551077 1958 81 81;1766;1958 18.67775 0.3348 -1.856825 20.534575 0.422664444062 0.990234007802 3848 174 174;3848;3945 0.0 0.0 ENST00000435735.1 NCintron pseudogene unitary pseudogene ENSG00000233217 3379 479630 chr10:129860677-129860739+ NoOverlap chr10 129860677 129860739 + 7.29601423939 21 0.915108974848 3.52208097492 3.77393326447 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129860676;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129860677-129860739%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129860677-129860739&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.670764439999 0.500230961047 0.713843706947 131658941 131659003 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131658940;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129860677-129860739%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131658941-131659003&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QKGHAGHRGSKDEAPCHQPGWEISK Same 481535 chr10:129860677-129860739+ 3392 3392 -13 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.388888888889 5.85452857143 0.9903 0.8197 5.03482857143 0.423409710281 0.75738354366 3774 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -0.591380952381 0.9333 -4.17764761905 3.58626666667 0.0691101838984 0.547902140259 15316 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 3390 497300 chr12:121059440-121059478- NoOverlap chr12 121059440 121059478 - 8.80953079004 13 0.755600941364 -4.44223850049 13.2517692905 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;121059439;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121059440-121059478-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A121059440-121059478&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.363865112881 0.499669747503 1.00465853394 121497243 121497281 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;121497242;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121059440-121059478-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A121497243-121497281&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQFFYNELILDQEVRVLKMAKVSTQEPPGFK Same 499312 chr12:121059440-121059478- 3489 3489 -99 0 1146 121053768 121059655 1742 1742;3390;7126;9195;12027;15420;18584 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:121053768-121059655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.538461538462 0.0 8.005 0.6156 -5.63789230769 13.6428923077 0.282338545705 1.04468190573 6046 2783 2783;4174;4538;6046;10102;15430;23561 9.40507692308 0.2645 -6.7331 16.1381769231 0.230018041441 0.936504522289 5554 2866 2866;2878;4226;4741;5525;5554;8163 0.0 0.179047884004 chr12:121038774-121038947- pseudogene unitary pseudogene, orthlog of mouse 2'-5' oligoadenylate synthetase-like 2 (Oasl2) (ENSG00000283542) 3391 582686 chr7:135310565-135310600- NoOverlap chr7 135310565 135310600 - 9.78943322102 12 0.944106202792 -1.10782492658 10.8972581476 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;135310564;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A135310565-135310600-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A135310565-135310600&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.403030163746 0.499524751928 1.03539533839 134995317 134995352 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;134995316;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A135310565-135310600-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A134995317-134995352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSCLAYDILDILPCYLCIFLGIQVIPPEEALPQKPHQR Same 583648 chr7:135310565-135310600- 3139 3139 252 0 153 135307168 135310600 183 183;3391;20071 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:135307168-135310600&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.0 16.0473333333 1.0 3.0627 12.9846333333 0.81093662726 1.0004032673 1627 118 118;1627;2784 37.5594083333 0.831 4.88495 32.6744583333 1.03189271166 1.02892379115 597 Best 597 597;1421;1711 0.0 0.110634267715 chr5:139382492-139382605- pseudogene solute carrier family 23 (ascorbic acid transporter), member 1 (SLC23A1) pseudogene (ENSG00000276067) 3395 508194 chr15:30072894-30072923- NoOverlap chr15 30072894 30072923 - 9.35629012585 10 0.806050202182 -9.64474980831 19.0010399342 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;30072893;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A30072894-30072923-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A30072894-30072923&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.242952265353 0.499305664659 0.967573948079 30365097 30365126 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;30365096;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A30072894-30072923-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A30365097-30365126&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWFYDSETRTQREKEK Same 509913 chr15:30072894-30072923- 2925 2925 470 0 1070 30072627 30072923 1627 1627;3395;5136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:30072627-30072923&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.433333333333 0.0 7.35769 0.8221 -10.94416 18.30185 0.276568699741 0.994435249001 6171 4036 4036;4615;6171 -0.20542 0.7043 -24.50455 24.29913 0.315777789997 1.07080185733 4479 1601 1601;2299;4479 0.0 0.0 ENST00000421447.1 NC pseudogene tight junction protein 1 (zona occludens 1) (TJP1) pseudogene (ENSG00000229389) 3401 479197 chr10:121951892-121951927+ NoOverlap chr10 121951892 121951927 + 7.77012502154 12 0.794141807177 -5.41826678813 13.1883918097 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;121951891;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A121951892-121951927%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A121951892-121951927&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.256685763394 0.498781517632 1.00393116214 123711407 123711442 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;123711406;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A121951892-121951927%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A123711407-123711442&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALRKVMILMEK*EK Same 481102 chr10:121951892-121951927+ 3344 3344 57 1 763 121951540 121951927 1171 1171;1532;3401;23742 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:121951540-121951927&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 6.37465 0.9005 -15.6430083333 22.0176583333 0.410176293873 0.945432061849 3896 1494 1494;1612;3896;22772 4.602175 0.3247 -19.8231166667 24.4252916667 0.277536463096 1.07309823871 4862 2854 2854;2954;4862;25178 0.0 0.0 ENST00000437593.1 NC pseudogene unitary pseudogene ENSG00000226864 3402 539487 chr2:88857535-88857570- NoOverlap chr2 88857535 88857570 - 11.1399665276 12 0.819054703593 -12.0906917751 23.2306583027 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;88857534;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88857535-88857570-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A88857535-88857570&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.442555797412 0.498759244253 1.021687309 89157048 89157083 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;89157047;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88857535-88857570-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A89157048-89157083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VQWKVDNALQSGNSQESVTEQDSK None NA NA 0 10 88857382 88861919 10 10;114;2592;3402;9296 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:88857382-88861919&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.75 18.30235 0.9883 -19.49035 37.7927 0.417243190607 1.02724808944 3823 79 79;1171;1739;3460;3823 33.815825 0.7604 -16.4332416667 50.2490666667 1.00522704194 0.977995910599 1028 216 216;1028;1387;2681;2825 0.0 0.231247097006 chr22:22895375-22895694+ ENST00000377423.5,ENST00000624935.3 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 3426 476337 chr1:237940783-237941067- NoOverlap chr1 237940783 237941067 - 4.07427474127 95 0.312755016403 -1.20504108048 5.27931582175 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;237940782;285;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237940783-237941067-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A237940783-237941067&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.274504942165 0.496821963495 1.01481581597 238104083 238104367 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;238104082;285;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A237940783-237941067-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A238104083-238104367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLLSHFTLFPLMFINH*LFSTNHKDIGTLYLLFGA*AGLVGTALSLLIQAEIGQPGTLLGDDQIYNVIVTTHAFVIIFFMVIPITTGGFGN*LVPLMISAPDMAFPLINNMIK Same 478231 chr1:237940783-237941067- 2417 2417 1009 39 236 237940783 237943644 302 302;662;735;826;878;1214;1221;3426 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:237940783-237943644&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.428070175439 0.539772727273 -0.761948421053 0.0668 -2.39537578947 1.63342736842 -0.017519098915 0.532096138356 52414 15205 15205;16524;19960;20662;24160;29790;35876;52414 36.6762347368 0.6789 15.5941178947 21.0821168421 0.987519727446 1.00604101092 1312 316 316;468;540;604;1096;1312;1906;1926 0.0 0.827343282138 chrM:5904-7445+ pseudogene mitochondrially encoded NADH dehydrogenase 2 (MT-ND2) pseudogene (ENSG00000283166) 3427 561213 chr4:17873404-17873505- NoOverlap chr4 17873404 17873505 - 3.31783231207 34 0.903786032609 -2.70739994855 6.02523226063 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17873403;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17873404-17873505-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17873404-17873505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.312981605289 0.496752792711 1.02062728913 17875027 17875128 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17875026;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17873404-17873505-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17875027-17875128&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NPDSFEVLSNLNKRKRPPWKITEMSTKRHKRQSCNSGQMANYFSK Same 562204 chr4:17873404-17873505- 3538 3538 -111 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.362745098039 0.298245614035 3.49215882353 0.9989 -4.07386176471 7.56602058824 0.587886382588 1.01175390346 2608 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 0.563744117647 0.6666 -9.38962058824 9.95336470588 0.368343441736 0.875806354045 4128 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0 ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 3428 496182 chr12:70445631-70445687- NoOverlap chr12 70445631 70445687 - 10.8061421357 19 0.464153746692 -4.96103697074 15.7671791064 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70445630;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70445631-70445687-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70445631-70445687&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.401231754096 0.496730292034 0.971878689844 70839411 70839467 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70839410;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70445631-70445687-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70839411-70839467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TCPDCQGHSLSPFSLELGANP*GLVPNAIWYTDITQHLPLNALNFSTLLWTLIR Same 498182 chr12:70445631-70445687- 3569 3569 -141 5 155 70445357 70448659 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.473684210526 0.0 -3.25336842105 0.163 -7.79323157895 4.53986315789 0.0143130363155 0.676868613234 34973 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 11.0941157895 0.2015 -9.27733684211 20.3714526316 0.423885557563 1.04532291731 3842 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 3429 510859 chr16:20728394-20728465+ NoOverlap chr16 20728394 20728465 + 7.36124589605 24 0.575097276265 1.78179177952 5.57945411652 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20728393;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20728394-20728465%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20728394-20728465&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.446581334206 0.496671163018 0.927870198778 20739716 20739787 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20739715;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20728394-20728465%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20739716-20739787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IIDENGNVLPPGKEGEIALRLKSTQPFCFFSEYVI Same 512497 chr16:20728394-20728465+ 3658 3658 -229 0 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 0.0 5.65659166667 0.9662 -2.6190375 8.27562916667 0.567466844429 0.990782004658 2728 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 22.7020791667 0.7518 -11.3809083333 34.0829875 1.04727177463 0.988507062483 369 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.879399950953 chr12:7323459-7323560+ 0.907475037725 chr12:7323459-7323560+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 3432 563907 chr5:37834722-37834784+ NoOverlap chr5 37834722 37834784 + 7.52889050472 21 0.914330038111 4.28941918839 3.23947131634 ENST00000326524.6,ENST00000344622.8,ENST00000381826.8,ENST00000427982.5,ENST00000502572.1,ENST00000510177.5,ENST00000515058.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;37834721;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37834722-37834784%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A37834722-37834784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.69231980611 0.496504142183 0.64560050464 37834824 37834886 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;37834823;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37834722-37834784%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A37834824-37834886&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGRPLTGGQREGGRGVEQHQADSHDIP Same 564895 chr5:37834722-37834784+ 3455 3455 -23 0 1098 37834655 37842122 1665 1665;3432;9737;17708;23431;43248;66339;67574 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:37834655-37842122&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.714285714286 0.892712550607 0.299947619048 0.9257 -3.0384 3.33834761905 0.0480972403636 0.608721562876 23580 4518 4518;14736;23580;58453;64403;65427;67583;67906 -6.61491904762 0.5174 -12.0331904762 5.41827142857 0.0125180147837 0.607564224832 29735 5584 5584;29735;41849;43350;44494;45609;51811;60370 0.0 0.0 ENST00000326524.6,ENST00000620847.1 AntiCDS,AntiUTR5 not annotated putative regulatory region 3434 545027 chr20:35277828-35277935- NoOverlap chr20 35277828 35277935 - 4.55467779107 36 0.62313140561 -0.610847266184 5.16552505725 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;35277827;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A35277828-35277935-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A35277828-35277935&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.35548138051 0.496164963643 0.970056169639 33865631 33865738 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;33865630;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A35277828-35277935-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A33865631-33865738&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLLFLQTMGAQLSGGRGAPEPAQTQPQPQPQPAAPEGPEQPR None NA NA 0 718 35277717 35277935 1109 1109;3434 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:35277717-35277935&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.787037037037 0.668918918919 6.6967 0.7961 -1.94791111111 8.64461111111 0.691656605741 1.04873030227 2121 2078 2078;2121 6.73074444444 0.4234 -2.99836388889 9.72910833333 0.522639634278 0.868122327701 3447 3186 3186;3447 0.0 0.0549606549303 chr17:81219880-81220056- ENST00000424358.1,ENST00000433764.5 NC,NCintron protein-coding gene protein coding gene ENSG00000126005 3436 486925 chr11:2652636-2652680- NoOverlap chr11 2652636 2652680 - 4.4290733099 15 0.765645838102 -6.99469314416 11.4237664541 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;2652635;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A2652636-2652680-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A2652636-2652680&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0185816380936 0.496064990187 1.02436857609 2673866 2673910 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;2673865;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A2652636-2652680-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A2673866-2673910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESNTATHTTKIDPPGSPCCRKSLSR Same 488889 chr11:2652636-2652680- 3298 3298 138 0 2412 2652195 2652680 Best 3436 3436;64186 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:2652195-2652680&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.666666666667 -5.72412666667 0.7895 -15.9884333333 10.2643066667 0.0384466293386 0.983971063824 26025 Best 26025 26025;56419 -5.72412666667 0.2468 -15.9884333333 10.2643066667 0.0282612775151 0.762207327365 24281 Best 24281 24281;49314 0.0 0.0 ENST00000597346.1,ENST00000155840.9 NC,AntiCDSintron not annotated potentially spurious 3438 509717 chr15:82711677-82711727- NoOverlap chr15 82711677 82711727 - 9.43572355719 17 0.82860438293 5.48195872587 3.95376483132 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;82711676;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A82711677-82711727-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A82711677-82711727&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.638293287339 0.495926507028 0.665210216632 83380429 83380479 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;83380428;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A82711677-82711727-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A83380429-83380479&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WCGAHVGIYCGHGEIIHFEGECLQQK Same 511448 chr15:82711677-82711727- 3360 3360 78 0 422 82699633 82711838 594 594;666;2562;3438;6176 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:82699633-82711838&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.549019607843 0.265625 15.9620176471 0.9845 5.41712941176 10.5448882353 0.869779517878 0.982077104538 1397 242 242;908;1397;1646;2079 23.7553764706 0.4556 9.12746470588 14.6279117647 0.731778530738 0.866127305882 2701 862 862;988;2701;2921;3420 0.0 0.0 ENST00000440089.1 NC pseudogene unitary pseudogene ENSG00000228141 3444 514465 chr16:56193740-56193781- NoOverlap chr16 56193740 56193781 - 5.72400733403 14 0.920365344581 -4.62645712921 10.3504644632 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;56193739;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56193740-56193781-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A56193740-56193781&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.169244467425 0.495667259255 1.0484387694 56227652 56227693 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;56227651;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56193740-56193781-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A56227652-56227693&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TDRPTETGGPEGAHPFAAGHPLPK Same 516117 chr16:56193740-56193781- 3503 3503 -59 0 1286 56191313 56194112 1942 1942;3444;31465;36646;38456;47043;50502;59548;64898;65693 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:56191313-56194112&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.714285714286 0.760180995475 -2.10028571429 0.9658 -12.9234357143 10.82315 0.0959652809798 1.01991021974 16309 5744 5744;16309;26528;60646;61684;66065;68363;69167;72514;73281 -9.43621428571 0.4032 -20.8426571429 11.4064428571 0.0202380675704 0.769547026385 26908 7040 7040;17639;26908;52826;54474;57942;62845;66974;67638;71986 0.0 0.0 ENST00000567381.1,ENST00000262493.10,ENST00000562316.5,ENST00000563661.1 NC,AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 3446 584697 chr8:78647811-78647909+ NoOverlap chr8 78647811 78647909 + 1.74553629259 33 0.452360177652 -8.72007584211 10.4656121347 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78647810;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78647811-78647909%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78647811-78647909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0258639346443 0.495620071765 1.02186971903 79560046 79560144 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79560045;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78647811-78647909%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79560046-79560144&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IILPQHLSLNTLQQVLGQINWIHPYSGIPTNSLTNLFDTLKGGPALNLL*DLSPLA Same 585628 chr8:78647811-78647909+ 3252 3252 194 6 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.424242424242 0.0 -1.28926969697 0.0304 -2.23460606061 0.945336363636 0.0226318374017 0.450874169689 31535 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 2.15658181818 0.1522 -7.11194545455 9.26852727273 0.137871809967 0.847023535102 8644 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 3449 511015 chr16:27067423-27067473+ NoOverlap chr16 27067423 27067473 + 6.24361770995 17 0.786782994269 -2.6118352869 8.85545299684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;27067422;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A27067423-27067473%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A27067423-27067473&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.350488303061 0.495341357733 1.04945650723 27078744 27078794 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;27078743;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A27067423-27067473%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A27078744-27078794&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAPPTAPSRLEGKSEASLPGSGSGSSILSSASFISLGSSALTYK Same 512655 chr16:27067423-27067473+ 3468 3468 -19 0 1164 27067257 27067584 1766 1766;3449;10098 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:27067257-27067584&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.177083333333 -2.83657058824 0.9256 -11.0110058824 8.17443529412 0.0475656763008 0.920559153772 23697 2003 2003;2882;23697 -3.83880588235 0.3272 -12.6198 8.78099411765 0.0431957291383 0.728501282867 20210 3724 3724;4350;20210 0.0 0.0 ENST00000418886.1,ENST00000565783.1 NC,AntiNC under investigation ENSG00000234186 has long been considered as an ambiguous gene. RefSeq recognise human C16orf82 and its mouse ortholog 4930571K23Rik as single exon protein-coding genes, although both are lncRNAs in GENCODE (where the transcript structure is certainly well supported). The human CDS is poorly conserved over its first half, although the putative STOP codon and sequence upstream produce a PhyloCSF signal that looks genuine, suggesting the potential for partial translation in mammalian genomes. However, there is no obvious ATG initiation codon to use. A [CTG] codon conserved in mammals seems to demarcate the conserved sequence, which would give a 154aa CDS in human [chr16:27066996-27067460]. 3460 483804 chr11:18603775-18603819+ NoOverlap chr11 18603775 18603819 + 8.09539327621 15 0.929701686122 0.0018599708875 8.09353330533 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;18603774;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A18603775-18603819%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A18603775-18603819&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.470792531058 0.494074402822 1.01228551489 18625322 18625366 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;18625321;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A18603775-18603819%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A18625322-18625366&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ACMTHTFFFPPQTPVEVSKDDPGEVMQL None NA NA 0 836 18599926 18603819 1296 1296;1382;3460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:18599926-18603819&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488888888889 0.0 9.11262 1.0 -0.119706666667 9.23232666667 0.593303234145 0.959744012152 2578 1021 1021;1404;2578 10.2803866667 0.3859 -1.11493333333 11.39532 0.314718923033 0.800295991146 4486 3106 3106;3497;4486 0.0 0.0 ENST00000501599.2 NC protein-coding gene protein coding gene ENSG00000247595 3470 505554 chr14:102052554-102052634- NoOverlap chr14 102052554 102052634 - 6.05252220675 27 0.548516060121 -0.245481481155 6.2980036879 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;102052553;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A102052554-102052634-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A102052554-102052634&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.325688648399 0.49334067677 0.999996182043 102518891 102518971 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;102518890;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A102052554-102052634-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A102518891-102518971&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VWEREKGPRISFSKRKLELFLAEPEKRKR Same 507404 chr14:102052554-102052634- 3756 3756 -286 0 2437 102052554 102052995 Best 3470 3470;16427;44225 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:102052554-102052995&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.530864197531 0.0 11.4355222222 0.819 1.52167407407 9.91384814815 0.798812984461 1.03851341338 1675 Best 1675 1675;5325;9569 8.55136666667 0.4276 -3.16947037037 11.720837037 0.547597623138 0.894968866487 3358 Best 3358 3358;4106;4802 0.0 0.0 ENST00000557242.1,ENST00000553701.1 NC,NCintron not annotated potentially spurious 3502 585616 chr8:144050794-144050856+ NoOverlap chr8 144050794 144050856 + 4.18175696759 21 0.64062460263 -5.58325231643 9.76500928402 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144050793;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144050794-144050856%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144050794-144050856&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0993234574765 0.490440410716 1.0511676411 145105695 145105757 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145105694;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144050794-144050856%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145105695-145105757&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CRPPPDPPGTALSTSVLHQSMASSPKMPR Same 586554 chr8:144050794-144050856+ 3650 3650 -148 0 591 144049161 144051191 902 902;1476;2944;3502;6411;8419;8554;19953;27554 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144049161-144051191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.698412698413 0.549019607843 6.86499047619 0.8077 -2.21491428571 9.0799047619 0.45532410458 1.0029602258 3466 822 822;1234;1275;2096;2721;3466;4144;4232;11683 6.43379047619 0.4637 -7.04396666667 13.4777571429 0.460299038145 0.923709209091 3684 1010 1010;1721;1924;2036;2359;2452;2682;3550;3684 0.0 0.0843054563124 chr16:88720069-88720258- ENST00000528912.1 NC pseudogene unitary pseudogene (ENSG00000204791) 3503 593107 chr9:122905081-122905212- NoOverlap chr9 122905081 122905212 - 3.99892734296 44 0.912053586911 0.558229546486 3.44069779647 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;122905080;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905081-122905212-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A122905081-122905212&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.578622864658 0.49034166085 0.842372019324 125667360 125667491 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;125667359;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905081-122905212-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A125667360-125667491&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLRRALPRRDEAPPSPSRAVAGLPGAALSDPARAPSGRAGAGTMRLGPQPGCLVPGGR Same 594060 chr9:122905081-122905212- 3514 3514 -11 0 637 122905081 122905417 981 981;3503;11688;13684;41126;71692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:122905081-122905417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.810606060606 1.01538461538 -0.524588636364 0.893 -2.90808409091 2.38349545455 0.0701184945932 0.629944073666 19658 17978 17978;19658;42486;47356;64280;71470 -2.72205227273 0.3785 -4.68370909091 1.96165681818 0.037699954905 0.569428648571 21574 17127 17127;21574;24738;33390;36324;59653 0.0 0.0 ENST00000335387.9,ENST00000478216.1 UTR5,NC not annotated putative regulatory region 3506 510487 chr16:3145710-3145745+ NoOverlap chr16 3145710 3145745 + 9.15360015631 12 0.81773734137 -3.57429182529 12.7278919816 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3145709;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3145710-3145745%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3145710-3145745&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.358903698559 0.490157533827 1.01773359637 3195711 3195746 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3195710;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3145710-3145745%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3195711-3195746&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAEESAGGTCCPVLRSSLRGALCLGGVEPWRPEVR None NA NA 0 256 3144015 3150751 334 334;814;1899;3328;3506;5705;11798;14824;15461;50287;55094 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3144015-3150751&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.694444444444 0.461538461538 15.1084083333 0.9962 -0.379016666667 15.487425 0.801991412991 1.02237293689 1661 167 167;1186;1262;1661;1809;1880;2134;2541;2601;5815;43459 2.097 0.6092 -10.7253833333 12.8223833333 0.202935249785 0.844891851477 6163 1889 1889;2882;2930;3314;3490;3499;6163;6623;16490;31726;59008 0.0 0.137539116799 chr16:30524517-30526046- ENST00000428155.1,ENST00000575497.5 UTR5,NC pseudogene extension CASP16P pseudogene extended (ENSG00000228146) 3508 503447 chr14:23101877-23101912- NoOverlap chr14 23101877 23101912 - 6.32131648064 12 0.932364385443 -4.88538329303 11.2066997737 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23101876;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23101877-23101912-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23101877-23101912&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.133776936912 0.490082461648 1.03965726026 23571086 23571121 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23571085;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23101877-23101912-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23571086-23571121&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLSFLLICQAGSGPEFGLVTTCGTGSSDFFCTGR Same 505286 chr14:23101877-23101912- 3544 3544 -36 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.0 7.60376666667 0.9641 -9.80416666667 17.4079333333 0.501949683607 1.0062210385 3133 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 14.2980416667 0.5842 -15.1155416667 29.4135833333 0.737308004327 1.05079021804 2685 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 3525 483127 chr10:132808795-132808845- NoOverlap chr10 132808795 132808845 - 9.40099992822 17 0.548393987945 -6.49088232482 15.891882253 ENST00000368586.9 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;132808794;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A132808795-132808845-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A132808795-132808845&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.380929388245 0.488994126298 0.963534845848 134622299 134622349 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;134622298;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A132808795-132808845-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A134622299-134622349&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLLQSSELLPTTLNLVLYGLPHQAIG Same 485057 chr10:132808795-132808845- 3349 3349 176 0 126 132808795 132810723 153 153;2303;3525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:132808795-132810723&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.647058823529 0.588461538462 17.6722058824 0.8331 -9.93305882353 27.6052647059 0.656819662963 0.997383560805 2271 54 54;1929;2271 7.96779411765 0.493 -19.7719764706 27.7397705882 0.668451162004 1.06365803602 2936 58 58;2379;2936 0.0 0.115474778586 chr19:50435161-50435250+ ENST00000368586.9 CDS coding exon(s) CFAP46 multiple cassette exons 3533 518402 chr17:55965631-55965666+ NoOverlap chr17 55965631 55965666 + 12.5241331272 12 0.952101930266 2.49780813853 10.0263249887 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;55965630;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A55965631-55965666%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A55965631-55965666&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.488623201377 0.488487049583 0.98484425094 54042992 54043027 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;54042991;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A55965631-55965666%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A54042992-54043027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SRRLPMVPQDIYSSMPGSIFFITENEK Same 519808 chr17:55965631-55965666+ 3151 3151 382 0 388 55962062 55965666 543 543;3533 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:55962062-55965666&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.36 18.5505166667 0.9792 3.51536666667 15.03515 0.829101016718 1.00248303712 1563 132 132;1563 23.6766916667 0.3779 5.18733333333 18.4893583333 0.51255494984 0.92667864309 3486 2325 2325;3486 0.0 0.0 coding exon(s) ANKFN1 cassette exon 3537 468010 chr1:173635609-173635647+ NoOverlap chr1 173635609 173635647 + 9.91014616306 13 0.881696803235 0.397300062271 9.51284610079 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;173635608;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A173635609-173635647%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A173635609-173635647&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.469299336855 0.4883168481 1.02413834199 173604748 173604786 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;173604747;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A173635609-173635647%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A173604748-173604786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPLIFSLLFICFFGESFCICDGTVWTKVGWEILPEEVHYWK Same 469876 chr1:173635609-173635647+ 3384 3384 153 0 1014 173635609 173636934 1550 1550;3537;17642 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:173635609-173636934&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.435897435897 0.0 18.2210538462 0.9592 4.02335384615 14.1977 0.796767637285 1.00487383945 1682 Best 1682 1682;3137;3671 19.3582307692 0.414 3.72380769231 15.6344230769 0.520968900638 0.881079204511 3453 Best 3453 3453;3847;5448 0.0 0.0 ENST00000333279.2 AntiCDSintron protein-coding gene protein coding gene ENSG00000232113 3569 546346 chr21:8393588-8394562+ NoOverlap chr21 8393588 8394562 + 0.826617227667 325 0.174771578311 0.778376298484 0.0482409291829 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8393587;975;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393588-8394562%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8393588-8394562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.339140477195 0.486419762948 0.68942474756 153972 154946 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153971;975;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393588-8394562%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153972-154946&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTAGGIRIAPLEVKFLDRRKTDQSESICQECFH*SRTKVGGSKTIRYRRSSDHKRCRPAMRRRYSHDPPGSFRETKVFGFRGEYGCKAET*RN*RKGTTRSGACGLI*LNTGNLTRPGHGQD*QIDSSFSIPWVVVHGRS*LVERFVWLIPITNETLAC*LVTRPPSGRRPPTS*RDKWRSATRD*AITGL*CP*MSGAARALH*LAQRVPTLRRQARVTR*TPFVMGIGDCNYSP*TRNSQ*VRVISLR*LSPCPLYTPPVATTDWMV**GPRIGPAGVGPRPWRSAEKTVELDYLEEVKVVTRFP*VNLRKDH*RSPEGEARGGAAAAR Different 547763 chr21:8393588-8394625+ 1375 1375 2194 268 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.568205128205 1.08826966764 -2.02703661538 0.2564 -1.77367415385 -0.253362461538 0.0468710444077 0.445079200096 23861 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -3.55124338462 0.157 -2.82181692308 -0.729426461538 0.021345547438 0.281548992601 26522 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0639851683524 chr8:144522475-144523409- ENST00000623860.2,ENST00000625598.1 NCintron,AntiNC not annotated LSU-rRNA_Hsa 3575 547165 chr21:8393588-8394562- NoOverlap chr21 8393588 8394562 - 0.613454458645 325 0.174771578311 0.382685224437 0.230769234208 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8393587;975;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393588-8394562-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8393588-8394562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.330453441021 0.486107168025 0.703383669259 153972 154946 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153971;975;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393588-8394562-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153972-154946&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGAAAGLALRAPLMILPQVHLRKPCYDFYFL*IVKFDRLLSAPPGPWADPGGADPRASLNHPIGSSDGRCVQRAGT*STQAYDPHLLGIPRSWGIIAIPDPHHEWGSTGYPRLPA*GRHTLSQSV*RACSPGHLRASQTCYCSISGG*TPLVPLRSWGTPTARGSRN*LACQSLVRYRN*PDKSLHQLRTAMHHHPRNRERAINLSILSVSGPGEVSRVESN*AAGSTPGGALPSIPLSFSFATILPPEPKDFGFPEAARRVMGITPPHRRSASFMVGTTTVSDRLRTSDFRS*LMKTFLANAFALVRLAPVQEFHL*RRNTNAPGRPS Different 548573 chr21:8393588-8394739- 1370 1370 2205 254 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.568205128205 1.08826966764 -1.62407292308 0.2564 -1.64771353846 0.0236406153846 0.0594279434974 0.460917952064 21360 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -3.20997969231 0.157 -2.56961169231 -0.640368 0.0240763360157 0.284551540335 25642 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0403727371119 chr2:235670100-235671057+ ENST00000625598.1,ENST00000623860.2 NC,AntiNCintron not annotated SSU-rRNA_Hsa 3581 581618 chr7:81581744-81581842- NoOverlap chr7 81581744 81581842 - 2.94439701442 33 0.845232364848 -3.60240299819 6.54680001262 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;81581743;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81581744-81581842-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A81581744-81581842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.195683309702 0.485662304788 1.04272258539 81211060 81211158 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;81211059;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81581744-81581842-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A81211060-81211158&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IYSLETEATDNGNNTSSYTFTVFVENVDDPISCDPSFSTGAGIIQVNFIDK Same 582577 chr7:81581744-81581842- 3586 3586 -5 0 592 81560120 81607572 904 904;925;973;1260;1465;2153;3581;4237;4691;5577 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:81560120-81607572&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.373737373737 0.3 2.42332121212 0.9872 -8.88326060606 11.3065818182 0.669877331986 1.09953441942 2206 1152 1152;1609;1628;2206;2439;2771;3071;3088;3130;3532 4.55521515152 0.4458 -10.6898515152 15.2450666667 0.632902730854 1.02353018461 3052 2526 2526;2821;2931;3052;3114;3116;3529;3585;4138;5392 0.0 0.0 ENST00000413944.2 NC pseudogene unitary pseudogene ENSG00000233491 3582 490638 chr12:9562969-9563007+ NoOverlap chr12 9562969 9563007 + 13.1609076915 13 0.752745156728 -2.7479309027 15.9088385942 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9562968;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9562969-9563007%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9562969-9563007&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.521492195827 0.485463055084 0.995907830759 9715565 9715603 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9715564;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9562969-9563007%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9715565-9715603&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILAILCSAVPNDSLFLCFQGGDEEDISLTAYVVGMFFEAGLNFTVWIPVISDFR Same 492614 chr12:9562969-9563007+ 3820 3820 -238 0 598 9552442 9566349 921 921;2868;3582;16714 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9552442-9566349&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.487179487179 0.5 19.5847846154 0.8824 0.0828230769231 19.5019615385 0.661972177803 0.990381677746 2243 1470 1470;2031;2243;2612 36.8692461538 0.6407 3.53367692308 33.3355692308 0.979690571467 1.03352780626 1430 Best 1430 1430;2479;2486;4527 0.950594438882 chr12:31127651-31127725- 0.814418013321 chr12:31127651-31127725- ENST00000520314.2,ENST00000518709.5 NC,NCintron pseudo-exon AC092821.1 pseudo exons 3586 534327 chr2:89537789-89537857+ NoOverlap chr2 89537789 89537857 + 9.27112617182 23 0.402228480633 2.27353477478 6.99759139704 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89537788;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89537789-89537857%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89537789-89537857&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.307183224958 0.485321873644 1.00243218679 91800135 91800203 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91800134;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89537789-89537857%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91800135-91800203&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PLCVINLSPLVLDDHTPQCNCTPPTLCTTISHGIYYNYYLYPFNIEYQILASTVLYVLWK Same 535704 chr2:89537789-89537857+ 4063 4063 -477 0 52 89533188 89547118 59 59;529;844;1124;3586;7862 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89533188-89547118&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.579710144928 0.648902821317 16.0529913043 0.5445 5.77634782609 10.2766434783 0.579348765245 1.01479002848 2657 10 10;123;831;1300;2657;4594 32.9602913043 0.722 3.02490434783 29.9353869565 1.0488645158 1.04994139451 340 312 312;340;1357;1759;1894;1991 0.99788288825 chr4:4197166-4198103- 0.982419096247 chr4:4197166-4198103- pseudogene Otopetrin 1 (OTPO1) unprocessed pseudogene (ENSG00000283427) 3592 577663 chr7:27143331-27143657+ NoOverlap chr7 27143331 27143657 + 3.20338158104 109 0.853191410431 1.73441558393 1.46896599712 ENST00000222726.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27143330;327;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143331-27143657%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27143331-27143657&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.726237168699 0.485080769112 0.634409576838 27182950 27183276 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27182949;327;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143331-27143657%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27182950-27183276&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEESAWTWPAGCTWARRAPRWRWQRSCGRALRSQSGRSPSGRR*DPCHCSRSRTCRSACSPSP*IARSRNYDLHNYATGSPGHLDSDRKMSLQNKSSFVF*YVCLICGSRSFVR Same 578702 chr7:27143331-27143657+ 2694 2694 898 70 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.587155963303 1.14548440066 -3.83535504587 0.9736 -3.99126605505 0.155911009174 0.0483741575641 0.360849627073 23526 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -21.3978073394 0.9174 -18.0814394495 -3.31636788991 -0.0392890544631 0.392668091843 64695 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222726.3,ENST00000467897.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 3594 539827 chr2:110025066-110025125- NoOverlap chr2 110025066 110025125 - 6.38148508966 20 0.592244602121 -2.50619511604 8.8876802057 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110025065;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025066-110025125-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110025066-110025125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.272984533569 0.484987435356 1.05428762922 110782643 110782702 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110782642;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025066-110025125-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110782643-110782702&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEPGASAQEDCELCPPGYHCPDPELQGHANVFAIPCPAGSECPAGEAAG Same 541187 chr2:110025066-110025125- 3880 3880 -286 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.0 11.15906 0.8121 1.18889 9.97017 0.609559652344 1.01219551586 2490 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 20.66304 0.6319 -2.00503 22.66807 0.978358692059 1.0437023046 1449 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 3606 562903 chr4:149553138-149553173- NoOverlap chr4 149553138 149553173 - 13.064350009 12 0.89963759823 2.86434160918 10.2000083998 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;149553137;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149553138-149553173-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A149553138-149553173&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.500792477312 0.484629368532 0.977469797413 150474290 150474325 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;150474289;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149553138-149553173-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A150474290-150474325&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QILNLAELEEWMDRKKCK Same 563899 chr4:149553138-149553173- 3366 3366 240 0 141 149548480 149563850 169 169;941;3606;10164 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:149548480-149563850&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.923076923077 20.7839666667 0.9995 8.06265833333 12.7213083333 0.885648295564 0.940175313582 1345 74 74;1345;1356;2019 23.41275 0.4603 6.31105833333 17.1016916667 0.616004480532 0.893450733021 3119 137 137;2480;3119;3323 0.0 0.0 ENST00000506683.5 NC protein-coding gene protein-coding gene ENSG00000234828 3615 591951 chr9:41039613-41039765- NoOverlap chr9 41039613 41039765 - 6.5082980371 51 0.399298084993 3.44148036545 3.06681767164 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;41039612;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41039613-41039765-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A41039613-41039765&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.457822363342 0.484103045661 0.832390175718 69112842 69112994 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;69112841;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41039613-41039765-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A69112842-69112994&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CFCPIIFTHSFLQDRYMILGQNGFFVSPSDSLAIIAANLSCIPYFHQMGVRGFGRSMPTSMALDR Same 592906 chr9:41039613-41039765- 4070 4070 -455 0 171 41039613 41053896 205 205;261;1694;3615;17582;51960 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:41039613-41053896&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.535947712418 0.2745215311 18.156872549 0.9003 10.0508901961 8.10598235294 1.05121473278 1.0137997342 248 187 187;248;261;371;844;4863 49.5601705882 0.9688 22.0995137255 27.4606568627 0.964003649471 1.02740779352 1648 1512 1512;1518;1550;1553;1648;1663 0.99268304888 chr9:68392319-68392473+ 0.997912412874 chr9:68392319-68392473+ ENST00000613141.1,ENST00000617940.1 NC,AntiNCintron pseudogene PGM5P2 unprocessed pseudogene (ENSG00000277778) 3628 505798 chr14:105624903-105625031- NoOverlap chr14 105624903 105625031 - 5.21382557029 43 0.421606775006 0.0382534411064 5.17557212918 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105624902;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105624903-105625031-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105624903-105625031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.250721047 0.483249481239 0.992966018227 106091240 106091368 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106091239;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105624903-105625031-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106091240-106091368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEQFNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKGLPSSIEKTISK None NA NA 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.558139534884 0.724137931034 8.56050930233 0.7977 -3.6818 12.2423093023 0.979998707374 1.04849646275 898 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 4.59495813953 0.4697 -14.1853302326 18.7802883721 0.832299679446 1.08932902377 2382 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.105168476203 chr3:184386492-184386755+ ENST00000390543.3 NC immunoglobulin segment overlaps an immunoglobulin region 3633 579713 chr7:142796853-142796894+ NoOverlap chr7 142796853 142796894 + 13.8184571947 14 0.626608464397 7.22557830811 6.59287888663 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142796852;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142796853-142796894%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142796853-142796894&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.50994888009 0.483052312349 0.782802886757 142494537 142494578 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142494536;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142796853-142796894%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142494537-142494578&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAPVFVLGLQAVSTDTQYFGPGTRLTVLGK None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.595238095238 0.538461538462 23.6341142857 0.9146 13.5788428571 10.0552714286 0.735913438623 0.822611898753 1949 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 28.2468 0.491 15.5392428571 12.7075571429 0.690356077751 0.759174102104 2847 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.141643286835 chr17:75588058-75590243+ ENST00000390415.1,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 3635 505779 chr14:105588129-105588188- NoOverlap chr14 105588129 105588188 - 4.09235988185 20 0.589655146105 -6.94568498507 11.0380448669 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105588128;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105588129-105588188-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105588129-105588188&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0502861981212 0.482941673743 1.02290286966 106054466 106054525 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106054465;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105588129-105588188-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106054466-106054525&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTNSSQDVTVPCR None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.65 0.652173913043 3.112295 0.9369 -19.94308 23.055375 0.656047685749 0.924087705363 2274 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 3.86542 0.5677 -26.01494 29.88036 0.7179384363 1.04359020073 2752 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0421774168688 chr7:127721287-127721400+ ENST00000390539.2 NC immunoglobulin segment overlaps an immunoglobulin region 3658 508728 chr15:45198578-45198643- NoOverlap chr15 45198578 45198643 - 6.26497266983 22 0.858253396866 1.49439082362 4.77058184621 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;45198577;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45198578-45198643-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A45198578-45198643&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.5865513578 0.481410428966 0.842850957223 45490776 45490841 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;45490775;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45198578-45198643-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A45490776-45490841&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSALWPQQPRFESESRHCGNNGTARGSVFFSPFL Same 510452 chr15:45198578-45198643- 3578 3578 80 0 1111 45198578 45201222 1685 1685;3658;6770;7314;14365;15805;20741;57385 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:45198578-45201222&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.621212121212 0.95652173913 2.79643181818 0.9574 -3.95317727273 6.74960909091 0.300933202448 0.89508209294 5595 Best 5595 5595;8787;14727;17218;22093;24393;42532;65917 1.14389545455 0.4181 -5.31360454545 6.4575 0.141392572127 0.677624862301 8460 Best 8460 8460;15084;16682;28123;29490;30928;42026;53935 0.0 0.0 ENST00000568314.1,ENST00000290894.12,ENST00000561278.1,ENST00000560034.1 NC,CDSintron,UTR5intron,AntiNCintron not annotated 3 tRNAs 3667 536007 chr2:175441808-175441834+ NoOverlap chr2 175441808 175441834 + 6.7117664814 9 0.963332570382 -5.97904454668 12.6908110281 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;175441807;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441808-175441834%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A175441808-175441834&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0133157810426 0.480762018329 1.01735658207 176306536 176306562 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;176306535;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441808-175441834%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A176306536-176306562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSLCSNCILDRLEEDPRELGENFGK Same 537370 chr2:175441808-175441834+ 3684 3684 -17 0 2593 175431262 175442589 Best 3667 3667;23940;24312;30353;42328;47431;68426;71581;72593 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:175431262-175442589&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.0 1.89186666667 0.9982 -10.1261222222 12.0179888889 0.124485168347 1.02082405618 13565 9400 9400;12533;13565;26288;43072;56059;57986;61202;69104 0.0153555555556 0.8745 -19.2046666667 19.2200222222 0.17872057803 0.997919344741 6835 6205 6205;6835;9148;28284;38003;50257;61246;63121;67251 0.0 0.0 ENST00000438963.1 NCintron not annotated potentially spurious 3681 533639 chr2:61181334-61181408+ NoOverlap chr2 61181334 61181408 + 6.80834400713 25 0.71450186923 3.02261198878 3.78573201835 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;61181333;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A61181334-61181408%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A61181334-61181408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.614711773795 0.479600558209 0.757924163055 61408469 61408543 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;61408468;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A61181334-61181408%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A61408469-61408543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESGVKHKGLIEIPNLSEENEVDDTEVCDQVSISFVLFSVK Same 535023 chr2:61181334-61181408+ 3720 3720 -39 0 929 61177533 61186081 1432 1432;2951;3231;3681;13227 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:61177533-61186081&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4 0.0 9.041096 0.962 6.30664 2.734456 0.542602969005 0.58317050733 2853 983 983;1603;2853;6337;7813 28.984572 0.8894 18.57136 10.413212 0.956809418222 0.781675278809 1744 374 374;473;1570;1744;2201 0.0 0.289081360174 chr14:77462160-77462242+ ENST00000357022.6,ENST00000493310.1 UTR5,NC pseudogene AHSA2 has 4 pseudo exons upstream of the ATG, so switched to pseudogene AHSA2P (ENSG00000173209) 3687 543801 chr20:49335620-49335685+ NoOverlap chr20 49335620 49335685 + 5.73450915109 22 0.609597924773 -2.19440011003 7.92890926112 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;49335619;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49335620-49335685%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A49335620-49335685&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.272488737333 0.479228411243 1.04625142412 47952157 47952222 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;47952156;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49335620-49335685%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A47952157-47952222&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YLSQGHTVCVRSEWPAQDTRSRRCYGDGGGAK Same 545192 chr20:49335620-49335685+ 4000 4000 -313 0 1366 49318436 49340428 2047 2047;3687;18732;36370;50172;50543;57104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:49318436-49340428&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.589285714286 4.92025 0.7797 -6.41322727273 11.3334772727 0.46499105269 1.06690166269 3385 3238 3238;3385;16849;16867;36672;53077;54154 21.7804590909 0.6149 -1.31892727273 23.0993863636 1.01408292424 1.048324513 869 70 70;869;3100;3618;7110;19303;47365 0.0 0.210805821309 chr8:73069805-73069981- pseudogene somatomedin B and thrombospondin type 1 domain containing (SBSPON) transcribed_unprocessed_pseudogene (ENSG00000283529) 3717 553606 chr3:141713327-141713374+ NoOverlap chr3 141713327 141713374 + 8.07630629092 16 0.762388418402 0.347256178036 7.72905011289 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;141713326;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141713327-141713374%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A141713327-141713374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.466627554703 0.477690998683 1.0030241207 141432169 141432216 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;141432168;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141713327-141713374%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A141432169-141432216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IEGLMESGPWLVKLH*ADNGIDGK Same 554555 chr3:141713327-141713374+ 3785 3785 -68 7 225 141713327 141738361 281 281;1940;3192;3717;12103 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:141713327-141738361&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4375 0.0 12.48283125 0.9344 0.17383125 12.309 0.699334163128 1.03562386767 2098 1721 1721;2098;2147;3697;14992 19.3285625 0.4826 1.7181875 17.610375 0.722637812751 0.953852403402 2737 Best 2737 2737;2887;3244;3826;36452 0.0 0.0 ENST00000474979.3 NC redundant PhyloCSF signals are accounted for elsewhere on the list 3723 511100 chr16:29113049-29113150+ NoOverlap chr16 29113049 29113150 + 8.8231587445 34 0.296581979095 3.72004996766 5.10310877684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;29113048;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A29113049-29113150%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A29113049-29113150&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.301265021202 0.477307920209 0.948906898076 29124370 29124471 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;29124369;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A29113049-29113150%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A29124370-29124471&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFFSLSLISVVLENHVATDEDEPALKCQRLEINCQDPSIKVKI Same 512742 chr16:29113049-29113150+ 4623 4623 -900 0 479 29113049 29116327 706 706;3723 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:29113049-29116327&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.411764705882 0.700228832952 16.0443764706 0.5365 6.97678823529 9.06758823529 0.780444175841 1.02519815986 1753 1 1;1753 29.2710823529 0.5639 12.658 16.6130823529 1.09552605995 0.982625130492 63 Best 63 63;1839 0.90390122947 chr16:87981036-87981127+ 0.949592711555 chr16:87981036-87981127+ ENST00000427965.6 NC pseudogene BTG3 associated nuclear protein (BANP) pseudogene (ENSG00000284649) 3733 582002 chr7:100882793-100882909- NoOverlap chr7 100882793 100882909 - 4.57265130602 39 0.806499169557 1.38567441396 3.18697689206 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100882792;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100882793-100882909-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100882793-100882909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.618302922759 0.476983814209 0.790403492398 100480414 100480530 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100480413;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100882793-100882909-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100480414-100480530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CIVHSSALACLPGRGRAAQPRGSCMGWVWWGWRWVCSELRR Same 582962 chr7:100882793-100882909- 3742 3742 -9 0 402 100882699 100896048 564 564;2139;2309;3733;10134;33066;33794;47001;47408;61791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100882699-100896048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.692307692308 0.447704081633 1.0523025641 0.9387 -0.80818974359 1.86049230769 0.14007356383 0.584064241697 12277 1085 1085;2762;12277;14242;15089;33604;35393;48431;52932;53395 -1.24526153846 0.4599 -4.94312051282 3.69785897436 0.124558646374 0.636225984531 9515 1829 1829;3172;9515;15507;19629;23787;40273;49567;60478;62610 0.0 0.0 ENST00000423692.5,ENST00000611405.4 AntiNC,AntiCDSintron pseudo-exon UFSP1 is a retrogene that has apparently evolved to use a downstream ATG, so this is 5' pseudo-exon sequence 3753 585773 chr8:8715532-8715576- NoOverlap chr8 8715532 8715576 - 7.5390465339 15 0.79859922179 -1.4785468022 9.01759333611 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;8715531;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A8715532-8715576-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A8715532-8715576&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.39928030636 0.47583856767 1.04228035804 8573042 8573086 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;8573041;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A8715532-8715576-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A8573042-8573086&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWSNGIRGAYESYLVTMDK Same 586710 chr8:8715532-8715576- 3757 3757 -4 0 139 8702390 8719546 167 167;2129;3075;3753;6028;26012 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:8702390-8719546&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.6 16.0088333333 0.8482 -4.20718 20.2160133333 0.647079111653 0.978565280699 2318 1679 1679;1680;2137;2318;4483;35378 19.1136133333 0.3186 -3.39873333333 22.5123466667 0.529303382253 1.03145625554 3426 2793 2793;3236;3426;3823;4475;30167 0.0 0.0 pseudogene unitary pseudogene ENSG00000284717 3789 529647 chr19:3482828-3483052- NoOverlap chr19 3482828 3483052 - 4.99427734256 75 0.382454566262 2.01374399751 2.98053334504 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;3482827;225;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3482828-3483052-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A3482828-3483052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.427282729599 0.473822132224 0.852090913186 3482826 3483050 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;3482825;225;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3482828-3483052-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A3482826-3483050&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGWPGPGSCLTSSLAADWAFGPKPDQEAAPRELRPSLTGEDLEGLDLQLALAWQGEEDAGGGGEGAPSEPPPPPEPRRPSIAFKDPPSRSSFWK Same 531110 chr19:3482828-3483052- 3802 3802 -13 0 30 3482828 3483376 30 30;3789 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:3482828-3483376&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.751111111111 0.505617977528 17.1192826667 0.8894 7.01583066667 10.103452 0.991507898244 1.03525333835 823 780 780;823 16.502728 0.5066 4.60267733333 11.9000506667 0.934365297138 0.938882812402 1920 846 846;1920 0.0 0.0449398632412 chr14:104104622-104104735+ protein-coding gene protein-coding gene ENSG00000284638 3791 498822 chr13:98396361-98396402+ NoOverlap chr13 98396361 98396402 + 8.67357144611 14 0.828702220188 -0.189578737531 8.86315018364 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;98396360;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98396361-98396402%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A98396361-98396402&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.447336675333 0.473482677608 1.027063073 99048615 99048656 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;99048614;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98396361-98396402%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A99048615-99048656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GMAGQLAPLQVTEGSTSSGTESSESDSEMLIPGSQPLIFGNPAVLRSPSLLR Same 500839 chr13:98396361-98396402+ 3729 3729 62 0 183 98395479 98396402 221 221;647;961;993;1497;3791;4580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:98395479-98396402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.875 19.6589785714 1.0 3.16509285714 16.4938857143 0.941839402543 1.00933900074 1128 101 101;518;673;881;952;1128;1340 45.3560928571 0.9262 9.476 35.8800928571 0.988149101391 1.01925934067 1303 855 855;856;865;1168;1169;1303;3287 0.0 0.0819636787584 chrX:132077872-132078966- ENST00000319562.10 CDSintron coding exon(s) FARP1 alternative final exon 3792 539828 chr2:110025183-110025224- NoOverlap chr2 110025183 110025224 - 13.3121428 14 0.614496070802 -1.35468563437 14.6668284344 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110025182;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025183-110025224-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110025183-110025224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.492367173604 0.47345599336 1.00583650039 110782760 110782801 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110782759;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025183-110025224-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110782760-110782801&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSGAPQATLLSLMLLPPGLSSFEDHPCPPGHWCLGDQGAFFCPPGTFRSEPGASAQEDCELCPPGYHCPDPELQGHANVFAIPCPAGSECPAGEAAG Same 541188 chr2:110025183-110025224- 4129 4129 -337 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.619047619048 0.0 21.3465714286 0.8194 4.23387142857 17.1127 0.59510404174 1.00346667801 2566 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 31.7421214286 0.7535 -0.145107142857 31.8872285714 1.04008963255 1.04424708367 479 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 3794 579971 chr7:152168534-152168623+ NoOverlap chr7 152168534 152168623 + 5.12707665761 30 0.897943592482 1.70681001643 3.42026664118 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;152168533;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A152168534-152168623%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A152168534-152168623&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.635270774653 0.473278305109 0.760883805236 151865619 151865708 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;151865618;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A152168534-152168623%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A151865619-151865708&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FQKFCFW*NETYRKESLSGFWNQESRGEQNEK Same 580940 chr7:152168534-152168623+ 3808 3808 -14 7 397 152163143 152176287 555 555;1572;3794;66217 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:152163143-152176287&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.477777777778 0.203619909502 0.530933333333 0.9706 -0.77536 1.30629333333 0.0707693571739 0.484932488017 19575 2815 2815;5783;19575;57298 -0.329856666667 0.3746 -1.63698333333 1.30712666667 0.0374911435099 0.50023453666 21646 4389 4389;6920;21646;46222 0.0 0.0 ENST00000262189.10,ENST00000473186.5 AntiCDSintron,AntiNCintron not annotated potentially spurious 3807 521774 chr17:45161411-45161530- NoOverlap chr17 45161411 45161530 - 5.24952258868 40 0.910238803693 3.92779001091 1.32173257777 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;45161410;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45161411-45161530-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A45161411-45161530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.790804117779 0.472709177845 0.552377130032 43238778 43238897 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;43238777;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45161411-45161530-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A43238778-43238897&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RREARRPSPPFWAGRRQRRDSLRSESTPWGVVRARGEAGPSGLPEVAAPGDGGK Same 523199 chr17:45161411-45161530- 3904 3904 -97 0 1505 45161411 45169317 2238 2238;3807;36705 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:45161411-45169317&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.75 0.956937799043 -1.4854625 0.9671 -0.657255 -0.8282075 -0.0451119233349 0.309970425954 69281 4076 4076;22428;69281 -3.517145 0.3687 -1.60378 -1.913365 -0.0278950567834 0.391840836852 55189 15798 15798;20895;55189 0.0 0.0 ENST00000589950.1,ENST00000585340.1,ENST00000307275.7 NC,AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 3812 505956 chr15:21609269-21609349+ NoOverlap chr15 21609269 21609349 + 7.03542231548 27 0.431097886625 0.407585166119 6.62783714936 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;21609268;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21609269-21609349%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A21609269-21609349&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.251562117311 0.472344510663 1.01380217103 22332577 22332657 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;22332576;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21609269-21609349%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A22332577-22332657&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDSNVTELVLLGLSSSWELQLFLLLLFLFFYIAIVLGNLLIVVTVQAHAHLLQSPMYYFLGHLSFIDLCLSCVTLPKMLGDFLQQGK Same 507668 chr15:21609269-21609349+ 4272 4272 -460 0 509 21609137 21614980 756 756;2089;3812;4681;5034;9481;63060 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:21609137-21614980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.358024691358 0.0 16.5337444444 0.878 3.75587037037 12.7778740741 0.954813109197 1.05316439297 1063 347 347;392;1003;1013;1063;1118;2359 44.7179037037 0.9319 0.0146814814815 44.7032222222 0.985484141041 0.979596357751 1339 949 949;977;1339;1358;1773;2103;2551 0.988290189613 chr14:19747428-19748369+ 0.578562240496 chr14:19747428-19748369+ ENST00000625989.2 NC pseudogene (shared cluster) two olfactory receptor pseudogenes in close proximity (ENSG00000285491 & ENSG00000285116) 3813 505968 chr15:22044626-22044706+ NoOverlap chr15 22044626 22044706 + 7.03542231548 27 0.431097886625 0.407585166119 6.62783714936 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;22044625;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A22044626-22044706%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A22044626-22044706&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.251562117311 0.472344510663 1.01380217103 22332577 22332657 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;22332576;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A22044626-22044706%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A22332577-22332657&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDSNVTELVLLGLSSSWELQLFLLLLFLFFYIAIVLGNLLIVVTVQAHAHLLQSPMYYFLGHLSFIDLCLSCVTLPKMLGDFLQQGK Same 507679 chr15:22044626-22044706+ 4273 4273 -460 0 2707 22044494 22044847 Best 3813 3813;5035;63061 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:22044494-22044847&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.358024691358 0.0 16.5385481481 0.889 3.76808888889 12.7704592593 0.962074952375 1.05317656232 1022 320 320;1022;2281 42.0369481481 0.9258 0.419348148148 41.6176 0.986124675763 0.989517260091 1328 1296 1296;1328;2349 0.976061627087 chr14:19747428-19748369+ 0.612875107802 chr14:19747428-19748369+ ENST00000558896.5,ENST00000557817.4 NC,NCintron pseudogene extension olfactory receptor, family 4, subfamily Q, member 3 (OR4Q3) pseudogene (ENSG00000285135) 3814 537080 chr2:230990990-230991034+ NoOverlap chr2 230990990 230991034 + 11.5534602165 15 0.664217085018 6.09101342821 5.46244678831 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;230990989;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230990990-230991034%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A230990990-230991034&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.529909103359 0.472320581781 0.762258423615 231855705 231855749 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;231855704;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230990990-230991034%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A231855705-231855749&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLAPHSPAVEVHTAVFCPGRPEGTLDFQAR Same 538450 chr2:230990990-230991034+ 3972 3972 -158 0 389 230990378 230991124 544 544;1686;3814;7506;61923 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:230990378-230991124&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.75 20.7219666667 0.8647 11.7483533333 8.97361333333 0.645536877928 0.833238287629 2325 581 581;2118;2325;2832;27472 20.3117533333 0.3579 11.30524 9.00651333333 0.414176346981 0.671994238496 3882 3158 3158;3262;3882;4170;35218 0.0 0.0 ENST00000414876.5 AntiNCintron coding exon(s) SPATA3 alternative first exon 3815 572524 chr6:109285988-109286026+ NoOverlap chr6 109285988 109286026 + 9.33521537597 13 0.828965144873 -0.683823145353 10.0190385213 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109285987;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109285988-109286026%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109285988-109286026&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.430313291542 0.47232018728 1.03756778374 109607191 109607229 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109607190;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109285988-109286026%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109607191-109607229&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NYHSPLSQDEIGKVKRDVMVEYCQK Same 573551 chr6:109285988-109286026+ 3788 3788 27 0 180 109284468 109286489 218 218;344;3815 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109284468-109286489&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 16.8033846154 0.9999 4.16133076923 12.6420538462 0.849106426283 0.995100954338 1469 140 140;539;1469 20.4976 0.5344 3.68342307692 16.8141769231 0.694907707415 0.908006792913 2829 71 71;275;2829 0.0 0.0 ENST00000615766.4 NC redundant PhyloCSF signals are accounted for elsewhere on the list 3860 493945 chr12:132509232-132509426+ NoOverlap chr12 132509232 132509426 + 2.59400306866 65 0.676520473499 -2.01694922808 4.61095229674 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132509231;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509232-132509426%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132509232-132509426&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.208884109598 0.469882863068 0.983980350984 133085818 133086012 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;133085817;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509232-132509426%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A133085818-133086012&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QQQLQPSQSSQPQGSLPAPSALPDPGQPCQPSQRPLLGQRSWPQRSLLGLKQPCQPRRSLLGPGQPCRPQR Same 495936 chr12:132509232-132509426+ 3800 3800 60 0 98 132509173 132510440 116 116;202;637;794;2162;3860;16489;25303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132509173-132510440&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.365168539326 -0.104341538462 0.8522 -5.28844153846 5.1841 0.287636437901 0.885212683318 5926 6 6;93;263;1110;1440;2944;5926;7480 -17.2323230769 0.5577 -14.5532630769 -2.67906 -0.028527195568 0.361578742567 55779 2003 2003;2026;2435;2663;4003;7601;8523;55779 0.0 0.0944903683876 chr14:104927120-104927230+ ENST00000542061.2,ENST00000434748.2 NC,CDSintron coding exon(s) FBRSL1 alternative final coding exon 3865 528221 chr19:37823834-37823890+ NoOverlap chr19 37823834 37823890 + 7.76966847244 19 0.506287921681 -1.96812110982 9.73778958227 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37823833;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37823834-37823890%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37823834-37823890&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.265316183672 0.469570711269 1.05209726988 38314474 38314530 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38314473;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37823834-37823890%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38314474-38314530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGHDFSKPDVITSLEQGKEPWMIVREEK Same 529670 chr19:37823834-37823890+ 4133 4133 -268 0 2752 37822686 37830193 Best 3865 3865;20012;66021;67001 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37822686-37830193&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.385964912281 0.0 3.59133157895 0.5544 -3.02099473684 6.61232631579 0.0926709929649 0.861425387406 16693 Best 16693 16693;25935;53649;54524 5.14675789474 0.2314 -5.31908947368 10.4658473684 0.169769470391 0.812139483779 7159 Best 7159 7159;7167;27389;47287 0.46717978168 chr19:37707914-37708012- 0.34985946542 chr19:37707914-37708012- ENST00000587248.5,ENST00000586819.1,ENST00000592640.5 NC,NCintron,AntiNC pseudogene zinc finger protein pseudogene (ENSG00000267640) 3875 483265 chr11:1107649-1107753+ NoOverlap chr11 1107649 1107753 + 5.01822568966 35 0.430896031564 -1.52735718744 6.5455828771 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1107648;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1107649-1107753%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1107649-1107753&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.165705478107 0.469068935336 1.0407999735 1101557 1101661 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1101556;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1107649-1107753%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1101557-1101661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VHTLSSECNTSLCKEKPSVCPLGFEVKSKMVPGRCCPFYWCGK Same 485195 chr11:1107649-1107753+ 4283 4283 -408 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.561904761905 0.370588235294 17.4618771429 0.8776 -1.72610857143 19.1879857143 1.04465529374 0.954297551808 315 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 26.8167142857 0.7014 -4.97180285714 31.7885171429 1.0447168375 1.00083864966 407 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.144322698506 chr11:1197903-1198004+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 3879 588114 chr8:142575785-142575841- NoOverlap chr8 142575785 142575841 - 5.21463672738 19 0.522100283898 -7.45198417318 12.6666209006 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;142575784;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142575785-142575841-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A142575785-142575841&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0889387659973 0.468997789162 0.979549342336 143657146 143657202 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;143657145;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142575785-142575841-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A143657146-143657202&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HMGCLLEMPHQSSNQREVGVSTLGTLWSAQLWPCLR Same 589059 chr8:142575785-142575841- 3525 3525 354 0 902 142572180 142575904 1386 1386;1889;2097;3879;8408;13162;50093;62741 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:142572180-142575904&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.614035087719 0.0 8.09657894737 0.6806 -11.0775210526 19.1741 0.596811465151 0.960171565534 2563 1388 1388;1898;2170;2516;2563;4680;8183;28509 0.818131578947 0.3568 -20.8422052632 21.6603368421 0.409446424729 1.08723014894 3909 2925 2925;3250;3308;3738;3861;3909;7574;37771 0.0 0.162113180996 chr17:28634517-28635609- pseudogene extension MROH4P 6 new exons at 5' end 3891 547639 chr21:36966429-36966698- NoOverlap chr21 36966429 36966698 - 5.7622878049 90 0.355858023278 4.31058226948 1.45170553542 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;36966428;270;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A36966429-36966698-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A36966429-36966698&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.554177522739 0.468220939117 0.677161876841 38338729 38338998 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;38338728;270;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A36966429-36966698-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A38338729-38338998&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGAALPAGAGPGLGRWGGRARRARPAGGAAMLITLCYLYLWARWGRRPAELVRATVRRLRASRCSFTFCGAAAQPPGARVCLSRGGRVFCVSDSQVGGSGGR Same 549044 chr21:36966429-36966698- 4164 4164 -273 0 150 36962033 36966698 179 179;3891 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:36962033-36966698&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.785185185185 1.0136765889 3.40851444444 0.4169 1.33012111111 2.07839333333 0.25733983393 0.65708739166 6738 741 741;6738 3.52304111111 0.3409 -2.29070333333 5.81374444444 0.295286516116 0.755162732309 4678 48 48;4678 0.0 0.117239990567 chr4:3316171-3318051+ ENST00000419461.5,ENST00000336648.8,ENST00000430068.1 UTR5,UTR5intron,AntiNC redundant PhyloCSF signals are accounted for elsewhere on the list 3904 530976 chr19:35791977-35792051- NoOverlap chr19 35791977 35792051 - 4.90525600925 25 0.709246662089 -1.44013589829 6.34539190754 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35791976;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35791977-35792051-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35791977-35792051&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.347579948964 0.467313642885 0.997441915908 36282879 36282953 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36282878;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35791977-35792051-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36282879-36282953&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSSLWPPGLVTGIPLVDPKELLAAQGEPDCTYESSSPPSWPSESPAVPLPALLLPSQGKPPR Same 532443 chr19:35791977-35792051- 4089 4089 -185 0 212 35784826 35806955 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.653333333333 0.125 6.121952 0.8703 -2.608552 8.730504 0.540630954369 1.01382125285 2866 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 2.43166 0.4445 -7.249516 9.681176 0.297468165746 0.824769367731 4655 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.209313852461 chr1:155257498-155257657- ENST00000567313.1,ENST00000433059.1 NC,NCintron pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 3908 512285 chr16:72425759-72425863+ NoOverlap chr16 72425759 72425863 + 3.5406085658 35 0.850854832205 -1.60436862963 5.14497719543 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72425758;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425759-72425863%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72425759-72425863&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.374177957988 0.467073749232 0.966563939891 72459658 72459762 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72459657;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425759-72425863%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72459658-72459762&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NQLTRVLINVKSTGGGEEEGEGGRKEKSCKGGWQKSWHR Same 513929 chr16:72425759-72425863+ 3865 3865 43 0 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52380952381 0.961538461538 -0.0774885714286 0.9837 -3.62236285714 3.54487428571 0.152507107834 0.711273810756 11393 Best 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -7.64405714286 0.853 -12.9594971429 5.31544 0.0458580645457 0.667986622251 19582 Best 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000561611.2,ENST00000624829.3 AntiNC,AntiNCintron not annotated potentially spurious 3918 538307 chr2:42169514-42169579- NoOverlap chr2 42169514 42169579 - 5.87353181026 22 0.845129250851 0.621190920472 5.25234088979 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;42169513;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A42169514-42169579-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A42169514-42169579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.528168153916 0.466831399966 0.892056566723 42396654 42396719 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;42396653;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A42169514-42169579-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A42396654-42396719&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGGHFIQRTDRVADAEPDPLVL Same 539682 chr2:42169514-42169579- 3817 3817 101 0 1198 42169275 42169579 1811 1811;3918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:42169275-42169579&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.954545454545 5.35417272727 0.852 -0.539090909091 5.89326363636 0.320310897523 0.833854591625 5197 Best 5197 5197;20863 2.83604545455 0.3739 -1.54519545455 4.38124090909 0.111949659545 0.589632790277 10461 Best 10461 10461;28000 0.0 0.0 ENST00000458490.1,ENST00000422013.2,ENST00000318522.9,ENST00000409040.1 NC,NCintron,AntiUTR5,AntiNC not annotated putative regulatory region 3949 581156 chr7:45866060-45866101- NoOverlap chr7 45866060 45866101 - 8.15694267063 14 0.665995269703 -5.14075693914 13.2976996098 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;45866059;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A45866060-45866101-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A45866060-45866101&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.301756953946 0.465089757072 0.997950540642 45905659 45905700 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;45905658;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A45866060-45866101-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A45905659-45905700&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWAQNPGLPGILNTTGRKRR Same 582108 chr7:45866060-45866101- 4061 4061 -112 0 616 45863094 45866101 944 944;3949 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:45863094-45866101&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.547619047619 0.35 14.7271857143 0.819 -11.3455285714 26.0727142857 0.537522441935 0.979823540221 2889 1419 1419;2889 16.9776785714 0.2847 -10.7622214286 27.7399 0.444507416362 1.05577375112 3757 2454 2454;3757 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283247 3957 548041 chr22:20703045-20703125+ NoOverlap chr22 20703045 20703125 + 5.08006670078 27 0.524498359655 -2.26189999172 7.3419666925 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;20703044;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20703045-20703125%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A20703045-20703125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.18982493469 0.465012450691 1.04619783695 21057333 21057413 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21057332;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20703045-20703125%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21057333-21057413&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFYYGGELQSQKSTEQQLAAQLVTLQVLER Same 549461 chr22:20703045-20703125+ 4309 4309 -352 0 1508 20702136 20704490 2244 2244;3957;4169;8406;12453;12907;29209;29720;35559;56010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:20702136-20704490&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.566433566434 13.107937037 0.7839 -2.6897 15.797637037 0.911734202585 1.01091847798 1263 130 130;847;1263;1735;2520;3116;3637;4021;20091;38948 11.3916259259 0.4485 -3.45140740741 14.8430333333 0.730623469647 0.97366007225 2706 1022 1022;2706;2800;2896;3161;3297;5293;6158;8692;8932 0.552632807135 chr22:18529019-18529093+ 0.489188174172 chr22:18529019-18529093+ ENST00000414022.5 NC pseudogene transmembrane protein 191A pseudogene (ENSG00000226287) 3960 534695 chr2:109973991-109974092+ NoOverlap chr2 109973991 109974092 + 6.63948237721 34 0.371349840005 0.797811748789 5.84167062842 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;109973990;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109973991-109974092%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A109973991-109974092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.229358910217 0.464768381051 1.00120257465 110731568 110731669 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110731567;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109973991-109974092%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110731568-110731669&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFSSSMPVYDFNWWYSLYFIIYIIINTYIFKSVFLAMVYSNYRKHFHILCVCVCVL Same 536047 chr2:109973991-109974092+ 4589 4589 -629 0 674 109963466 109974092 1038 1038;1288;1607;3960;4614;5824;6691;9138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:109963466-109974092&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 9.51659705882 0.5289 1.30734117647 8.20925588235 0.551966219983 1.01744486341 2805 1343 1343;1741;2554;2750;2805;2859;2974;4366 30.3218235294 0.726 2.17019705882 28.1516264706 1.03554852457 1.0435974209 546 119 119;225;546;552;1151;1223;1320;1375 0.0 0.0 ENST00000454928.5 NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000186148) 3972 579710 chr7:142792035-142792061+ NoOverlap chr7 142792035 142792061 + 12.6920111179 9 0.923796444648 -6.49650012122 19.1885112392 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142792034;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142792035-142792061%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142792035-142792061&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.315090038189 0.463961871427 0.971204383952 142499066 142499092 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142499065;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142792035-142792061%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142499066-142499092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AKPVTQIVSAEAWGR None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 1.35 18.5837666667 0.9556 1.58058888889 17.0031777778 0.689987046591 0.991421669492 2126 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 17.2061888889 0.4012 -2.08886666667 19.2950555556 0.369605313465 0.951061524929 4122 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.0 ENST00000610416.2,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 3973 579719 chr7:142801382-142801408+ NoOverlap chr7 142801382 142801408 + 12.6920111179 9 0.923796444648 -6.49650012122 19.1885112392 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142801381;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142801382-142801408%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142801382-142801408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.315090038189 0.463961871427 0.971204383952 142499066 142499092 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142499065;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142801382-142801408%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142499066-142499092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AKPVTQIVSAEAWGR None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.981818181818 19.9564111111 0.9581 -1.05434444444 21.0107555556 0.707404403242 0.974187869272 2055 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 17.0911111111 0.463 -4.68976666667 21.7808777778 0.479228278072 0.99901786707 3615 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.0 ENST00000466254.1 NC immunoglobulin segment overlaps an immunoglobulin region 3976 588823 chr9:35307307-35307345+ NoOverlap chr9 35307307 35307345 + 8.39163839129 13 0.966328033758 -0.928638504102 9.32027689539 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35307306;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35307307-35307345%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35307307-35307345&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.372986334407 0.463906741716 1.03530430752 35307304 35307342 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35307303;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35307307-35307345%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35307304-35307342&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SETINTSSFSGDDTGQGVLSLSDEGDMGILQATDTEASLEAENFALPAQLHPDPTCIAEELPPPIQPPLPLEPEPAIQTASTNQDLLELHPASSLETDTMLFNDASVSQSTTLETEGHFSHPLLEDPVLAAR Same 589766 chr9:35307307-35307345+ 3903 3903 73 0 5 35300167 35307879 5 5;669;1004;1082;1090;2464;3976;4603;5133;9301;65975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35300167-35307879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.512820512821 0.8125 13.3881230769 0.9973 0.929938461538 12.4581846154 0.754551706906 1.01810625228 1846 565 565;1736;1846;2357;2445;2557;2989;3035;3218;3591;8325 0.175946153846 0.5906 -15.1294384615 15.3053846154 0.225558825243 0.932016657229 5635 420 420;802;1067;1389;1934;2365;2375;2403;2753;3466;5635 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron coding exon(s) UNC13B cassette exon 3977 465043 chr1:42792818-42792862+ NoOverlap chr1 42792818 42792862 + 8.02382015189 15 0.86093130897 0.389580023289 7.6342401286 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;42792817;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42792818-42792862%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A42792818-42792862&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.465288838896 0.46377676318 0.992220952879 43258489 43258533 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;43258488;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42792818-42792862%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A43258489-43258533&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CHYASRMLLVSFLLDMAVR Same 466903 chr1:42792818-42792862+ 3815 3815 162 0 113 42789876 42798195 135 135;762;863;3977;11957 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:42789876-42798195&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.25 14.4130733333 0.9713 0.810153333333 13.60292 0.79958295334 1.03413952419 1669 541 541;636;1178;1669;3207 33.7263533333 0.6682 4.80386 28.9224933333 1.01126329899 1.03925145495 926 279 279;926;1615;1912;2144 0.0 0.0 ENST00000464081.1 NC protein-coding gene protein-coding gene ENSG00000274386 3978 584195 chr8:54679418-54679477+ NoOverlap chr8 54679418 54679477 + 4.09211001396 20 0.879392690929 -4.32650494426 8.41861495823 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;54679417;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54679418-54679477%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A54679418-54679477&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.160154601177 0.463748370806 1.05379896316 55591978 55592037 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;55591977;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54679418-54679477%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A55591978-55592037&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIHFSFHRWLDQGEDDCKIVRELYARDNSIFSASR Same 585126 chr8:54679418-54679477+ 4057 4057 -79 0 612 54678466 54679932 939 939;1014;3978 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:54678466-54679932&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.433333333333 0.0 2.035545 0.9418 -5.41991 7.455455 0.241907865183 0.922896376373 7218 748 748;1174;7218 10.792735 0.6927 -6.571645 17.36438 0.704401291905 1.00202492394 2796 205 205;338;2796 0.0 0.0 ENST00000521465.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 3984 637553 chr14:20430676-20430720- Extension chr14 20430676 20430720 - 11.141933473 15 0.786602578775 7.59609999259 3.54583348036 chr14:20429962-20430720- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;20430675;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20430676-20430720-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A20430676-20430720&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.589824069715 0.463428410887 0.556965762645 20898835 20898879 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;20898834;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20430676-20430720-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A20898835-20898879&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLLYSFSPPAVHRAALACGSEFFGAMLLSGMR Same 638202 chr14:20430676-20430720- 3978 3978 6 0 178 20430676 20435763 215 215;783;1136;1201;3984;5029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:20430676-20435763&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.688888888889 0.378151260504 18.1516466667 0.9909 14.6583866667 3.49326 0.688907799682 0.480809260357 2133 70 70;912;1148;1271;2133;9110 38.3851 0.6995 17.4874 20.8977 0.991777650434 0.933554676641 1247 412 412;1247;1258;1543;1777;8205 0.0 0.12344915393 chr22:50548167-50549951+ ENST00000344581.4 Extension5p coding exon(s) KLHL33 alternative first exon 3987 524607 chr18:54424561-54424623+ NoOverlap chr18 54424561 54424623 + 5.38430003893 21 0.735506654023 -1.8244524144 7.20875245333 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;54424560;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54424561-54424623%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A54424561-54424623&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.340749738133 0.463210767796 1.02065476995 51950931 51950993 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;51950930;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54424561-54424623%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A51950931-51950993&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LYLGYSRPHLGPAFFRKQSEFNKSPQFKEHQVINLP Same 526043 chr18:54424561-54424623+ 4117 4117 -130 0 663 54415278 54424623 1020 1020;1399;1951;1974;2187;2640;3987;7059;26481;56311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:54415278-54424623&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.428571428571 0.0 5.07046666667 0.8444 -4.80513333333 9.8756 0.428411876364 1.03453308533 3714 1312 1312;1532;1793;1867;1963;3255;3308;3468;3714;4481 11.6025809524 0.56 -3.94118095238 15.5437619048 0.693310357558 0.963266654928 2838 85 85;217;311;1380;1426;2121;2398;2457;2578;2838 0.0 0.0 pseudogene unitary pseudogene ENSG00000283613 4003 511180 chr16:30055172-30055285+ NoOverlap chr16 30055172 30055285 + 6.40007630775 38 0.588413985295 3.64119733488 2.75887897287 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;30055171;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A30055172-30055285%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A30055172-30055285&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.603500875699 0.462063518315 0.73368299625 30066493 30066606 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;30066492;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A30055172-30055285%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A30066493-30066606&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQGCCADGSSPCRKQGSSGPPDCCWTCAEACNFPLPSPAHFLDACCPQPTR Same 512822 chr16:30055172-30055285+ 4154 4154 -151 0 188 30054796 30063839 226 226;1855;4003 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:30054796-30063839&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.675438596491 0.389876880985 15.2243657895 0.9701 8.21966842105 7.00469736842 1.05060057555 0.963378468785 253 Best 253 253;355;456 16.5215473684 0.3868 7.82023421053 8.70131315789 0.764301784905 0.816034506642 2589 41 41;2196;2589 0.0 0.0 ENST00000338110.9,ENST00000567249.1,ENST00000562240.1 UTR5,NC,NCintron protein-coding gene protein-coding gene ENSG00000285043 4028 491263 chr12:48765605-48765658+ NoOverlap chr12 48765605 48765658 + 4.3991389672 18 0.790865779948 -4.86648344352 9.26562241072 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;48765604;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A48765605-48765658%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A48765605-48765658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.130493025278 0.460523850526 1.05527961258 49159388 49159441 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49159387;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A48765605-48765658%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49159388-49159441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSPALQPGLAESLSESLLSRFMDHSILNDRTFSLY*EDMAAER Same 493240 chr12:48765605-48765658+ 4008 4008 20 1 154 48759259 48773560 184 184;484;2240;4028 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:48759259-48773560&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.37037037037 0.0 9.11801111111 0.9477 -3.46947222222 12.5874833333 0.677371265971 1.05282558705 2175 399 399;531;2175;8960 9.88683888889 0.3319 -4.29412777778 14.1809666667 0.392771462425 0.915143820318 4005 281 281;2172;4005;10183 0.0 0.0 ENST00000548054.2 NC protein-coding gene protein-coding gene ENSG00000257987 4029 577676 chr7:27147815-27147994+ NoOverlap chr7 27147815 27147994 + 4.8638767153 60 0.782858523435 3.36432168633 1.49955502898 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27147814;180;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147815-27147994%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27147815-27147994&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.745813130841 0.460522553875 0.654101039047 27187434 27187613 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27187433;180;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147815-27147994%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27187434-27187613&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLVVIELVCFWMAERQKRQQQIAPADAAAANGSERRSPLPGDRGDRGSKVTNSPQPARPPPAR Same 578715 chr7:27147815-27147994+ 4243 4243 -214 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.694444444444 1.11455108359 0.0668883333333 0.9315 -1.83589833333 1.90278666667 0.160168511977 0.610567940159 10885 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -5.77088166667 0.7595 -9.698595 3.92771333333 0.1228464816 0.663182199831 9630 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NCintron,AntiNCintron not annotated putative regulatory region 4037 512653 chr16:85170476-85170544+ NoOverlap chr16 85170476 85170544 + 6.83476965842 23 0.632124885143 1.4991563327 5.33561332572 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;85170475;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85170476-85170544%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A85170476-85170544&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.450419204728 0.460041888623 0.902257567487 85204082 85204150 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;85204081;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85170476-85170544%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A85204082-85204150&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFCTSEDSDINITSGEEDHKEQPFPGVCNPK Same 514298 chr16:85170476-85170544+ 4294 4294 -257 0 247 85169288 85171795 315 315;1225;4037;33765;48559;52041;63398 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:85169288-85171795&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.565217391304 0.18253968254 15.8126130435 0.827 2.67847391304 13.1341391304 0.838319087959 1.04950938451 1519 686 686;1182;1519;35870;37426;44051;65700 21.6396478261 0.6729 0.910304347826 20.7293434783 1.01184370062 1.03022380475 912 Best 912 912;1310;2378;23905;34536;69575;73658 0.0 0.0493152403757 chr2:45440-46385- coding exon(s) GSE1 5' extension 4048 581036 chr7:38249250-38249276- NoOverlap chr7 38249250 38249276 - 8.89485536681 9 0.788693064775 -11.5422664218 20.4371217887 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;38249249;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38249250-38249276-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A38249250-38249276&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.147365587375 0.459387020077 0.980947776924 38288851 38288877 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;38288850;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38249250-38249276-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A38288851-38288877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NGIDQEIIFPPIK None NA NA 0 578 38240099 38265655 880 880;946;1212;1353;2319;3451;3622;4048;8280;41779;49225 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:38240099-38265655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.296296296296 0.0 10.3200666667 0.9345 -19.7969 30.1169666667 0.319018034748 1.02678787862 5221 1335 1335;1528;1788;1910;2091;2312;3177;3446;5221;5413;7771 4.18381111111 0.393 -27.5281666667 31.7119777778 0.248562702298 1.03686196726 5226 2500 2500;2518;2952;3009;3184;3667;3896;4112;4120;5226;6124 0.0 0.0 ENST00000436911.6,ENST00000610516.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 4050 583874 chr8:32647627-32647662+ NoOverlap chr8 32647627 32647662 + 6.08700006331 12 0.97144274052 -4.7284750392 10.8154751025 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;32647626;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A32647627-32647662%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A32647627-32647662&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0912715337961 0.459361336793 1.04455663667 32505146 32505181 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;32505145;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A32647627-32647662%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A32505146-32505181&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FIDFPL*DAVSFGWGGLCVVMDR Same 584804 chr8:32647627-32647662+ 4410 4410 -360 3 544 32647141 32647662 825 825;4050;51515 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:32647141-32647662&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.0 2.94893333333 0.9977 -12.30865 15.2575833333 0.333553526279 1.04318646636 4952 1922 1922;4952;16190 -16.2042166667 0.7819 -29.582425 13.3782083333 -0.0319937741401 0.728427903397 58906 4056 4056;41386;58906 0.0 0.0 ENST00000287842.7,ENST00000522569.1 CDSintron,NCintron under investigation; now made coding Finds a potential 62aa single exon CDS in a 5' UTR exon of NRG1 [chr8:32647202-32647390]. This CDS was initially considered potentially suspect as it overlaps with a highly conserved promoter region, and is fairly low complexity in terms of amino acid sequence. However, the CDS is conserved across to amphibians with an almost complete absence of non-3mer indels.Following the analytical stage of this work the decision was made to annotate a protein-coding gene, and ENSG00000286131 appeared in GENCODEv31. 4052 485377 chr11:70365938-70365973+ NoOverlap chr11 70365938 70365973 + 12.7835334738 12 0.915999084459 4.84555840741 7.9379750664 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;70365937;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A70365938-70365973%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A70365938-70365973&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.496150803301 0.459313702452 0.880576974057 70212044 70212079 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;70212043;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A70365938-70365973%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A70212044-70212079&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PQEDEEGSWAQVGVFL Same 487333 chr11:70365938-70365973+ 3714 3714 338 0 314 70365343 70365973 421 421;4052 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:70365343-70365973&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.0 13.0468 0.9322 5.817375 7.229425 0.475520173285 0.783217303752 3310 1317 1317;3310 20.963475 0.9708 10.0533333333 10.9101416667 0.660474217941 0.708743159774 2959 1266 1266;2959 0.0 0.26724136505 chr1:203061652-203061678+ ENST00000530548.5,ENST00000253925.11,ENST00000532504.5 NC,CDSintron,NCintron coding exon(s) PPFIA1 2 cassette exons 4082 579866 chr7:150330294-150330350+ NoOverlap chr7 150330294 150330350 + 5.80462090749 19 0.62685989407 -3.37006321393 9.17468412142 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;150330293;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A150330294-150330350%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A150330294-150330350&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.225233417602 0.457986456936 1.05509528132 150027383 150027439 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;150027382;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A150330294-150330350%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A150027383-150027439&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLLAHQPFEELLDHWVSAYHLLEWLVEQQQPLQEYKGRHQLGKAGVALSATFWSPADSLSK Same 580836 chr7:150330294-150330350+ 4404 4404 -322 0 66 150329868 150331248 74 74;1780;4082;12493 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:150329868-150331248&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.614035087719 0.19 11.1645789474 0.709 0.860505263158 10.3040736842 0.522663994252 1.01641964497 2985 750 750;2072;2985;5137 15.0389473684 0.2916 -0.243547368421 15.2824947368 0.493035719447 0.932623505143 3557 2637 2637;3557;3566;5518 0.0 0.181478363891 chr1:203797523-203800462+ ENST00000343855.5,ENST00000323078.7 UTR5,UTR5intron pseudo-exon ZBED6CL pseudogenic sequence upstream of ATG 4102 559058 chr4:56410675-56410806+ NoOverlap chr4 56410675 56410806 + 2.84857501564 44 0.849651470068 -2.21667496589 5.06524998153 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;56410674;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56410675-56410806%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A56410675-56410806&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.281240521553 0.457175491489 0.991711005369 57276841 57276972 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;57276840;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56410675-56410806%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A57276841-57276972&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQSLGVYRDWKQCWAKYKNLKYEYRTVKYAHNSGDSSKTMKFFHDLDVILQYEPATQFTEEDANGR Same 560043 chr4:56410675-56410806+ 3987 3987 115 0 775 56410528 56419951 1197 1197;2551;4102;21082 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:56410528-56419951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.371212121212 0.0 -0.995506818182 0.9588 -8.15487045455 7.15936363636 0.307279324132 0.993157391284 5450 1822 1822;5450;9723;11374 22.7517136364 0.889 -3.89701363636 26.6487272727 1.02760007696 1.02551289744 651 Best 651 651;699;700;2092 0.0 0.0 ENST00000264220.6,ENST00000507724.1 AntiCDSintron,AntiNCintron pseudogene Transcribed unprocessed pseudogene. Myb/SANT-like DNA-binding domain containing (ENSG00000283156) 4128 491259 chr12:48727481-48727516+ NoOverlap chr12 48727481 48727516 + 9.02289176981 12 0.954406042573 -0.923433502515 9.94632527232 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;48727480;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A48727481-48727516%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A48727481-48727516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.360598585206 0.455126795533 1.03584034137 49121264 49121299 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49121263;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A48727481-48727516%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49121264-49121299&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQGGSEMAFFNLYLLGYQNSFQNK Same 493236 chr12:48727481-48727516+ 3887 3887 241 0 2345 48716321 48727516 3332 3332;4128;5685;61244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:48716321-48727516&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.361111111111 0.0 16.3978916667 0.9926 -1.36118333333 17.759075 0.831969026237 1.00462115962 1550 Best 1550 1550;4150;12005;27895 18.4259583333 0.3428 -3.20593333333 21.6318916667 0.437349865338 1.00894991577 3797 Best 3797 3797;3875;7636;8064 0.0 0.0 ENST00000548054.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 4140 588650 chr9:23826226-23826372+ NoOverlap chr9 23826226 23826372 + 4.00861836149 49 0.96566782355 1.39857139233 2.61004696916 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23826225;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23826226-23826372%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23826226-23826372&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.592720893366 0.454388569847 0.76263482672 23826224 23826370 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23826223;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23826226-23826372%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23826224-23826370&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGRLKREVDWTTDL*HRITNPFSASALPCVQLLCQAPIPGSTRGSIRR Same 589596 chr9:23826226-23826372+ 4240 4240 -100 16 2960 23821259 23831562 Best 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.605442176871 0.743174924166 -0.725071428571 0.9999 -1.02936530612 0.304293877551 0.0485293963494 0.437552028758 23498 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -6.97811428571 0.6295 -7.11423469388 0.136120408163 -0.00942538285592 0.484848293774 40577 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000380117.5 AntiUTR5 not annotated putative regulatory region 4144 571887 chr6:60425413-60425445+ NoOverlap chr6 60425413 60425445 + 13.6383000287 11 1.0 3.4422092519 10.1960907768 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;60425412;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60425413-60425445%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A60425413-60425445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.449489290586 0.453977619948 0.951307598705 57393158 57393190 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;57393157;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A60425413-60425445%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A57393158-57393190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHSYTSQDYSTQGNVGKISLDQIDLVSR Same 572912 chr6:60425413-60425445+ 3439 3439 705 0 364 60425413 60430572 507 507;4144 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:60425413-60430572&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.272727272727 0.0 15.4458909091 0.9173 3.15591818182 12.2899727273 0.565490736629 0.983751910755 2743 984 984;2743 35.8803181818 0.8629 10.0689545455 25.8113636364 1.01993862862 0.987406762114 788 Best 788 788;1480 0.807658581186 chr6:57532411-57532483+ 0.815718537194 chr6:57532411-57532483+ redundant PhyloCSF signals are accounted for elsewhere on the list 4159 528150 chr19:35586254-35586409+ NoOverlap chr19 35586254 35586409 + 5.44318465143 52 0.547239290808 2.75624610426 2.68693854717 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35586253;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35586254-35586409%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35586254-35586409&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.545422843597 0.453541448683 0.788104174365 36077156 36077311 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36077155;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35586254-35586409%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36077156-36077311&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GKVMALKPPSATQPAPNAPATPDAPPTTGDPGASAAPGSPTTTGGPGAPAEVPQEPQEPTQTPEELAFYAPNYLCLTIFAILLFPPFGLAALYFSYEVK Same 529598 chr19:35586254-35586409+ 4328 4328 -169 0 1162 35586254 35586481 1763 1763;4159 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35586254-35586481&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.653846153846 0.199573560768 4.48023076923 0.534 0.713513461538 3.76671730769 0.276346877451 0.820088786436 6183 1864 1864;6183 4.48023076923 0.1669 0.713513461538 3.76671730769 0.0962967287695 0.671621731174 11878 3672 3672;11878 0.0 0.0 protein-coding gene protein coding gene ENSG00000283758 4166 472214 chr1:46466536-46466589- NoOverlap chr1 46466536 46466589 - 9.31677776575 18 0.863112162288 7.56545558903 1.75132217672 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;46466535;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466536-46466589-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A46466536-46466589&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.687796186667 0.453285864936 0.402739240456 46932208 46932261 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;46932207;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466536-46466589-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A46932208-46932261&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIDSICRIGTSKRRRRGGAWEGAGPEEGGAGR Same 474092 chr1:46466536-46466589- 4247 4247 -81 0 1039 46448320 46466815 1586 1586;4166;4364;6954;7001;12344;14948;21944;27913;29912;31134;37875;42326;63692;65303;68731;69308;69969;73272 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:46448320-46466815&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.740740740741 1.18681318681 2.72807777778 0.7957 1.2844 1.44367777778 0.0282746850047 0.417206765785 29368 4552 4552;6553;11146;21508;25219;29368;31194;34313;35285;35620;41616;45262;45465;48699;48843;51388;55674;57607;70045 0.243655555556 0.3639 0.155122222222 0.0885333333333 -0.00531424599481 0.382137900592 38198 11286 11286;13413;13817;24293;29223;30818;32582;34899;38187;38198;39757;43966;44176;46982;51189;51970;55751;61426;67777 0.0 0.0 ENST00000455247.1 AntiNCintron not annotated putative regulatory region 4167 543329 chr20:36207730-36207768+ NoOverlap chr20 36207730 36207768 + 10.9406154018 13 0.965709456485 4.09489992949 6.84571547233 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;36207729;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36207730-36207768%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A36207730-36207768&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.498324826593 0.453236801845 0.870230801749 34795652 34795690 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;34795651;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36207730-36207768%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A34795652-34795690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EDTSASYQEAHTELEPVSPNSGCETTLAEATGTGVTGR Same 544718 chr20:36207730-36207768+ 3935 3935 232 0 105 36205843 36208375 125 125;723;906;1185;1244;1425;3209;4167;4835;30161 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:36205843-36208375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.564102564103 0.333333333333 15.4144692308 0.9893 3.59113846154 11.8233307692 0.783967269418 0.989847299666 1733 172 172;398;1291;1366;1423;1562;1733;1995;6918;10311 32.5899307692 0.5983 12.7664 19.8235307692 0.891755191811 0.922054518329 2148 1508 1508;2023;2148;2169;2610;3152;3488;3607;4506;5668 0.0 0.0 ENST00000479336.1,ENST00000202028.9 NC,CDSintron coding exon(s) EPB41L1 three consectutive cassette exons 4169 548039 chr22:20702587-20702742+ NoOverlap chr22 20702587 20702742 + 3.23999234862 52 0.440033804602 -2.45402687587 5.69401922449 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;20702586;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20702587-20702742%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A20702587-20702742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.107598335269 0.453196583333 1.04215583606 21056875 21057030 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21056874;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20702587-20702742%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21056875-21057030&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLRRRSQEALLLQGEVREAARERAQRVRRRLEEAERHKEDLVRKSPGMGLDPGWGGAGR Same 549459 chr22:20702587-20702742+ 4426 4426 -257 0 1508 20702136 20704490 2244 2244;3957;4169;8406;12453;12907;29209;29720;35559;56010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:20702136-20704490&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.692307692308 0.902777777778 5.23665769231 0.7551 -4.72701153846 9.96366923077 0.783512927142 1.08970134272 1735 130 130;847;1263;1735;2520;3116;3637;4021;20091;38948 6.38437307692 0.4656 -5.25964615385 11.6440192308 0.676791533649 0.955644074723 2896 1022 1022;2706;2800;2896;3161;3297;5293;6158;8692;8932 0.517510247295 chr22:18528559-18528682+ 0.57281926195 chr22:18528559-18528682+ ENST00000436618.5 NC pseudogene transmembrane protein 191A pseudogene (ENSG00000226287) 4173 579477 chr7:134209426-134209467+ NoOverlap chr7 134209426 134209467 + 7.60369987892 14 0.829501138977 -1.61456431661 9.21826419554 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;134209425;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134209426-134209467%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A134209426-134209467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.368674314587 0.453060487815 1.04214539409 133894178 133894219 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;133894177;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134209426-134209467%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A133894178-133894219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EETSKPEAIRVSIPHPELPHPQDLATDTK Same 580520 chr7:134209426-134209467+ 4127 4127 46 0 334 134208697 134210967 457 457;654;903;1140;1971;3155;4173;9542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:134208697-134210967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.547619047619 0.466666666667 11.7534071429 0.9792 -2.93167142857 14.6850785714 0.722978806217 1.0383473321 1997 146 146;1038;1039;1252;1266;1962;1997;10575 14.3203142857 0.365 0.00100714285714 14.3193071429 0.398585307059 0.872948104196 3972 15 15;2334;2668;2929;2944;3198;3972;9142 0.0 0.0 ENST00000285928.2 CDSintron coding exon(s) LRGUK alternative large final exon 4196 531036 chr19:37830805-37830840- NoOverlap chr19 37830805 37830840 - 12.4618416826 12 0.850995651179 3.91336647918 8.54847520341 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37830804;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830805-37830840-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37830805-37830840&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.483569741342 0.452161819816 0.926692620298 38321445 38321480 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38321444;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830805-37830840-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38321445-38321480&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EELFVAIGSSEVLVFDATRSPCTAK Same 532503 chr19:37830805-37830840- 4066 4066 130 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.409090909091 21.2722666667 0.9222 11.6315583333 9.64070833333 0.668059128868 0.808323506019 2211 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 29.2268083333 0.4742 10.0531416667 19.1736666667 0.692906201885 0.915518528249 2841 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.17263995561 chr19:37892578-37895456- 0.485368007528 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 4201 466061 chr1:86505354-86505410+ NoOverlap chr1 86505354 86505410 + 14.1379947286 19 0.525086233551 -8.31642651166 22.4544212402 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;86505353;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A86505354-86505410%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A86505354-86505410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.591585697519 0.451965453704 1.04610535592 86971037 86971093 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;86971036;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A86505354-86505410%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A86971037-86971093&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLASHHPLYITHIRSHSGLSGPLSERNA Same 467921 chr1:86505354-86505410+ 4003 4003 198 0 374 86505354 86506381 521 521;1954;4201;8562;51150 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:86505354-86506381&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.438596491228 0.38 2.95129473684 0.1211 -5.18019473684 8.13148947368 0.0545592107897 0.953777664766 22222 19199 19199;22222;23228;25766;26963 24.4934631579 0.1892 -13.3337631579 37.8272263158 0.492011325487 0.975926399731 3562 2191 2191;3220;3562;5167;30592 0.0 0.0 not annotated fragments of a reteroviral ORF 4210 579712 chr7:142796574-142796609+ NoOverlap chr7 142796574 142796609 + 15.0658915838 12 0.687836016378 5.07494155566 9.9909500281 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142796573;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142796574-142796609%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142796574-142796609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.46566324902 0.451685910543 0.912837136806 142494258 142494293 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142494257;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142796574-142796609%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142494258-142494293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QGPQGCANTGELFFGEGSRLTVLGK None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.467532467532 16.4501166667 0.9143 13.2712166667 3.1789 0.419064474761 0.421044964458 3811 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 17.6728583333 0.413 15.6043916667 2.06846666667 0.197879161636 0.377032492502 6306 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.196460039085 chr17:75588058-75590243+ ENST00000390413.1,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 4219 529308 chr19:56304790-56304825+ NoOverlap chr19 56304790 56304825 + 5.86263331771 12 0.742490018057 -7.22672496239 13.0893582801 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;56304789;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A56304790-56304825%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A56304790-56304825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0574807227134 0.451198811039 0.996298756193 56816159 56816194 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;56816158;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A56304790-56304825%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A56816159-56816194&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTPTVSFSVPSSLFPPKCYCHYCNLELDIR Same 530767 chr19:56304790-56304825+ 3932 3932 287 0 429 56302000 56304825 609 609;4219 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:56302000-56304825&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.0 7.43705833333 0.6885 -10.3639583333 17.8010166667 0.329043255779 0.999725791953 5037 949 949;5037 7.43705833333 0.2152 -10.3639583333 17.8010166667 0.171632488911 0.976898144849 7089 2949 2949;7089 0.0 0.0 ENST00000587247.1,ENST00000587340.5,ENST00000585670.5 NC,AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000267710 4220 582275 chr7:114631594-114631629- NoOverlap chr7 114631594 114631629 - 5.71200825771 12 0.94770733196 -5.15760834453 10.8696166022 ENST00000350908.8,ENST00000360232.8,ENST00000378237.7,ENST00000390668.3,ENST00000393489.7,ENST00000393491.7,ENST00000393494.6,ENST00000393495.7,ENST00000393498.6,ENST00000403559.8,ENST00000408937.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;114631593;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114631594-114631629-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A114631594-114631629&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0523924990224 0.451097510301 1.04336466098 114271649 114271684 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;114271648;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114631594-114631629-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A114271649-114271684&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEQMLLLLELLHLEK Same 583236 chr7:114631594-114631629- 4452 4452 -232 0 321 114629847 114631629 437 437;4220;35515;64095;71246 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:114629847-114631629&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.0 7.51588333333 0.9994 -9.7002 17.2160833333 0.554568219233 1.00924890464 2787 434 434;2787;4466;37278;71967 5.80218333333 0.8581 -22.55725 28.3594333333 0.531095010117 1.06487095684 3418 378 378;3418;5157;5827;54610 0.0 0.0 ENST00000350908.8,ENST00000412402.5 AntiCDS,AntiNC not annotated low complexity region 4228 481110 chr10:75401343-75401501- NoOverlap chr10 75401343 75401501 - 3.64925472804 53 0.747400424086 0.110473657818 3.53878107022 ENST00000372524.4,ENST00000535216.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75401342;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401343-75401501-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75401343-75401501&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.455158146446 0.450943056075 0.879880783771 77161101 77161259 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77161100;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401343-75401501-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77161101-77161259&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLLLLPLLLLPGRARSPEPAPRLPEPSPPLLPCARVGHEHSALAFCPKKQ*AQRRRRRRRRRR Same 483024 chr10:75401343-75401501- 4324 4324 -96 12 3027 75401238 75417825 Best 4228 4228;6685;19248;23964;26231;42519;58489;66465;71052;72621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75401238-75417825&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.779874213836 0.953585397653 -3.47970188679 0.7898 -6.57332830189 3.09362641509 -0.0196890662428 0.641671728408 53944 9680 9680;11699;11870;23869;27311;40902;43730;53944;63556;72593 -12.2209679245 0.6823 -21.1637981132 8.94283018868 0.0960744653485 0.823610750242 11906 8483 8483;11906;14750;22472;22714;29979;35309;42843;42916;72930 0.0 0.086734036448 chr8:37695980-37696222+ ENST00000372524.4 CDS not annotated putative regulatory region 4235 539231 chr2:73080499-73080537- NoOverlap chr2 73080499 73080537 - 14.6623227596 13 0.849950995064 12.2028844036 2.45943835607 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;73080498;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73080499-73080537-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A73080499-73080537&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.568511193237 0.45078257833 0.330346645997 73307627 73307665 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;73307626;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73080499-73080537-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A73307627-73307665&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLQPSTPPPKPPRLFTPSR Same 540609 chr2:73080499-73080537- 4512 4512 -277 0 311 73071669 73081530 418 418;1129;1310;1891;4235;7622;14465;18194;23824;54581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:73071669-73081530&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.13043478261 22.8293538462 0.9932 18.1439769231 4.68537692308 0.729170702336 0.479810572031 1973 166 166;734;1495;1711;1973;3802;9955;14922;47668;73713 23.9129 0.4904 12.4800846154 11.4328153846 0.595690564245 0.724503872182 3182 2300 2300;2572;2797;3173;3182;4993;30735;31537;41635;57875 0.0 0.0 ENST00000258098.6,ENST00000482554.5 CDSintron,NCintron coding exon(s) RAB11FIP5 2kb cassette exon 4237 581623 chr7:81607525-81607572- NoOverlap chr7 81607525 81607572 - 7.65034377947 16 0.873502708476 1.04987481236 6.60046896711 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;81607524;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81607525-81607572-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A81607525-81607572&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.487919013772 0.450717169108 0.940205202698 81236841 81236888 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;81236840;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81607525-81607572-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A81236841-81236888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TEIQILINPVNLPENMLPGTQLSRAYDKDVAGKGDVYR Same 582582 chr7:81607525-81607572- 4079 4079 158 0 592 81560120 81607572 904 904;925;973;1260;1465;2153;3581;4237;4691;5577 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:81560120-81607572&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4375 0.533333333333 8.27651875 0.9906 -0.60876875 8.8852875 0.558705600053 0.955490119174 2771 1152 1152;1609;1628;2206;2439;2771;3071;3088;3130;3532 7.0877 0.4231 -1.719925 8.807625 0.239242796459 0.721102492012 5392 2526 2526;2821;2931;3052;3114;3116;3529;3585;4138;5392 0.0 0.0 ENST00000413944.2 NC pseudogene unitary pseudogene ENSG00000233491 4247 505805 chr14:105640971-105641051- NoOverlap chr14 105640971 105641051 - 7.78915566427 27 0.421698329137 2.40900372521 5.38015193906 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105640970;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105640971-105641051-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105640971-105641051&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.300643725415 0.450326475749 0.931021644703 106107308 106107388 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106107307;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105640971-105641051-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106107308-106107388&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVGGPWGQGCGLAHPCAVPCLQVKWIFSSVVDLKQTIVPDYRNMIRQGA Same 507631 chr14:105640971-105641051- 4793 4793 -546 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.567901234568 0.308571428571 14.0026333333 0.5897 4.05275185185 9.94988148148 0.688009044238 1.03197852988 2136 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 15.2046592593 0.3216 1.58757037037 13.6170888889 0.675527875558 0.929146674939 2901 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.0879200887856 chr19:1003130-1003722+ immunoglobulin segment overlaps an immunoglobulin region 4268 500766 chr14:22544103-22544129+ NoOverlap chr14 22544103 22544129 + 9.12075551351 9 0.887907225147 -4.97523328993 14.0959888034 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22544102;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22544103-22544129%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22544103-22544129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.181425620462 0.449416884029 0.996637480643 23013047 23013073 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23013046;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22544103-22544129%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23013047-23013073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTFGKGTHVFIISGESSQVAPR None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.407407407407 0.0 13.1093111111 0.9757 -13.2725 26.3818111111 0.513621362237 0.967696324372 3053 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 15.8533666667 0.3482 -13.9005111111 29.7538777778 0.310922503224 1.05088164286 4523 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390535.2,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 4281 520315 chr17:7915686-7915727- NoOverlap chr17 7915686 7915727 - 10.3735998699 14 0.713496604868 2.80845709358 7.56514277628 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7915685;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7915686-7915727-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7915686-7915727&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.471347351657 0.448872499054 0.946041093626 7819004 7819045 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7819003;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7915686-7915727-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7819004-7819045&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LWDRVLGPARRWRRPLPSNGEGLPGEDAGER Same 521725 chr17:7915686-7915727- 4546 4546 -265 0 320 7909339 7916216 436 436;1938;4281;5688;13182;72031;73071;73673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7909339-7916216&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.809523809524 0.884210526316 16.8812642857 0.9715 7.87297857143 9.00828571429 0.758814806973 0.874518790926 1828 349 349;1564;1761;1828;15031;19061;29084;43318 13.1801285714 0.5427 1.89707142857 11.2830571429 0.462067784359 0.776499898214 3677 2836 2836;3263;3677;4021;11908;12386;65199;71655 0.0 0.0 ENST00000324348.7 NC protein-coding gene protein-coding gene ENSG00000179859 4295 552510 chr3:58180482-58180517+ NoOverlap chr3 58180482 58180517 + 7.05799158911 12 0.767288471809 -5.49134991566 12.5493415048 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;58180481;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A58180482-58180517%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A58180482-58180517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.183790985889 0.448075749919 1.01525025543 58166209 58166244 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;58166208;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A58180482-58180517%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A58166209-58166244&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FQYPVMSS*EYSWHVGK Same 553451 chr3:58180482-58180517+ 4250 4250 45 5 57 58180356 58180517 64 64;4295 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:58180356-58180517&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.0 14.5800916667 0.9117 -12.865975 27.4460666667 0.535904626361 0.987858727948 2899 542 542;2899 32.15585 0.6725 -16.0947 48.25055 0.95894166744 0.977430655563 1714 207 207;1714 0.0 0.0 pseudogene unitary pseudogene ENSG00000283511 4298 577668 chr7:27143856-27143957+ NoOverlap chr7 27143856 27143957 + 4.43470587275 34 0.764453210902 0.384388229426 4.05031764332 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27143855;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143856-27143957%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27143856-27143957&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.491507315599 0.447807916565 0.859841120117 27183475 27183576 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27183474;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143856-27143957%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27183475-27183576&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALIGELGGGEGGGARAPGACPPPVAAVQPDSSATRWRQGSSPSFRPGAAR Same 578707 chr7:27143856-27143957+ 4364 4364 -66 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.794117647059 1.13333333333 -2.52345588235 0.996 -5.21606176471 2.69260588235 9.86047026889e-05 0.599404384719 41464 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -15.2809264706 0.8067 -16.8819323529 1.60100588235 -0.0611979681868 0.454077577295 73492 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NCintron,AntiNCintron not annotated putative regulatory region 4299 587875 chr8:124815655-124815693- NoOverlap chr8 124815655 124815693 - 4.69981522744 13 0.861905851835 -6.30075398224 11.0005692097 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;124815654;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A124815655-124815693-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A124815655-124815693&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0217508903081 0.447778289812 1.03785207179 125827897 125827935 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;125827896;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A124815655-124815693-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A125827897-125827935&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VQAKGSVSQ*LQLSSTR Same 588820 chr8:124815655-124815693- 4173 4173 126 5 3082 124815655 124815693 Best 4299 4299 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:124815655-124815693&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.538461538462 0.0 3.64562307692 0.99 -13.2591846154 16.9048076923 0.41685834141 1.01817890866 3827 Best 3827 3827 1.23686153846 0.3731 -18.3773769231 19.6142384615 0.235620135603 1.03212731521 5455 Best 5455 5455 0.0 0.0 ENST00000533516.1 NC not annotated potentially spurious 4312 552909 chr3:88467380-88467418+ NoOverlap chr3 88467380 88467418 + 9.70916149249 13 0.743369074658 -1.08206919523 10.7912306877 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88467379;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88467380-88467418%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88467380-88467418&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.407332104553 0.447356743225 1.0381211988 88516530 88516568 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88516529;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88467380-88467418%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88516530-88516568&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLSYHRLPAGVSWLEFIYSK Same 553851 chr3:88467380-88467418+ 4704 4704 -392 0 416 88466612 88467418 585 585;2207;4312;26019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88466612-88467418&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.538461538462 0.361111111111 15.3879769231 0.9995 -4.05994615385 19.4479230769 0.848778334678 0.987073280339 1471 907 907;1471;2699;6077 17.5540615385 0.3556 -5.94061538462 23.4946769231 0.493973242762 1.03834531463 3552 2570 2570;3552;4407;12555 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283434 4317 570773 chr6:26196321-26196368+ NoOverlap chr6 26196321 26196368 + 7.75613743812 16 0.62072652018 -2.26961265877 10.0257500969 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;26196320;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A26196321-26196368%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A26196321-26196368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.308130832719 0.44724059125 1.05002332912 26196549 26196596 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;26196548;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A26196321-26196368%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A26196549-26196596&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AKECSASGSFPPNQAVLGK Same 571797 chr6:26196321-26196368+ 4713 4713 -396 0 963 26196321 26196594 1475 1475;4317;8244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:26196321-26196594&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.604166666667 0.457142857143 11.47255625 0.9029 -1.65825625 13.1308125 0.637757051355 1.04487948822 2362 91 91;2362;2898 20.33853125 0.4781 2.586425 17.75210625 0.734281535703 0.953039363064 2695 16 16;2402;2695 0.498000737565 chr6:26055787-26056428- 0.497752467755 chr6:26055787-26056428- pseudogene histone 1, H1, pseudogene 1 (ENSG00000216331) 4345 504800 chr14:76138806-76138985- NoOverlap chr14 76138806 76138985 - 3.56063670951 60 0.804738943567 0.504376638805 3.0562600707 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;76138805;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76138806-76138985-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A76138806-76138985&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.508675222369 0.445974058392 0.839407193813 76605149 76605328 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;76605148;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76138806-76138985-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A76605149-76605328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRAAPRARCPGRPGEAWGSLRSPPHCSGRPGARRRDEGQSKGSGRAAASLTSAFQRRAYQS Same 506646 chr14:76138806-76138985- 4256 4256 89 0 1204 76131383 76139120 1818 1818;4345;22997;27107;30537;31486;38498;41376;68067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:76131383-76139120&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 1.1351692243 1.17087666667 0.8186 -1.06832166667 2.23919833333 0.18417915466 0.662137357719 9493 4515 4515;9493;16210;27689;28296;48242;62795;67676;71399 -11.033465 0.7863 -11.8518016667 0.818336666667 -0.0269517951632 0.509123920473 54311 13549 13549;42486;43506;45749;54311;55020;58474;69721;73189 0.0 0.0 not annotated putative regulatory region 4364 472215 chr1:46466621-46466689- NoOverlap chr1 46466621 46466689 - 7.68747394662 23 0.891647012383 6.88064359064 0.806830355979 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;46466620;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466621-46466689-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A46466621-46466689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.776526614648 0.445179690884 0.348615905948 46932293 46932361 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;46932292;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466621-46466689-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A46932293-46932361&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAQRDLRPNPPGSLGRRSPRGRQIVPFIID Same 474093 chr1:46466621-46466689- 4505 4505 -141 0 1039 46448320 46466815 1586 1586;4166;4364;6954;7001;12344;14948;21944;27913;29912;31134;37875;42326;63692;65303;68731;69308;69969;73272 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:46448320-46466815&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.753623188406 1.02678571429 2.86782173913 0.8024 1.5706826087 1.29713913043 0.0584182858877 0.445015711663 21508 4552 4552;6553;11146;21508;25219;29368;31194;34313;35285;35620;41616;45262;45465;48699;48843;51388;55674;57607;70045 0.914882608696 0.3416 -0.625147826087 1.54003043478 0.0282279886359 0.474421478788 24293 11286 11286;13413;13817;24293;29223;30818;32582;34899;38187;38198;39757;43966;44176;46982;51189;51970;55751;61426;67777 0.0 0.0 ENST00000455247.1 AntiNCintron not annotated putative regulatory region 4367 466650 chr1:111989309-111989368+ NoOverlap chr1 111989309 111989368 + 5.14803986549 20 0.792897688258 -2.1702800341 7.31831989959 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;111989308;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111989309-111989368%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A111989309-111989368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.320503729156 0.445026304873 1.02180807458 112531931 112531990 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;112531930;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111989309-111989368%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A112531931-112531990&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLHSPREPTPPGRLSAPPRHGPHPQSFR Same 468510 chr1:111989309-111989368+ 4349 4349 18 0 3139 111987704 111990382 Best 4367 4367;39514;56303;64208;68005;68136;69319 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:111987704-111990382&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.783333333333 0.705882352941 1.811165 0.8494 -5.751885 7.56305 0.189526804935 0.928881668002 9251 Best 9251 9251;20935;24066;40454;53078;72081;72576 -5.49416 0.5152 -11.454055 5.959895 0.0286188895671 0.62881819811 24170 11706 11706;24170;34786;49854;53572;64032;73297 0.0 0.31424091442 chr16:28951012-28951398+ not annotated putative regulatory region 4380 544195 chr20:59146337-59146369+ NoOverlap chr20 59146337 59146369 + 8.39477302811 11 0.899895267622 -2.9196544994 11.3144275275 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;59146336;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A59146337-59146369%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A59146337-59146369&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.267814323916 0.444329579435 1.03853684994 57721392 57721424 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;57721391;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A59146337-59146369%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A57721392-57721424&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ERQPPPACGLST Same 545587 chr20:59146337-59146369+ 4131 4131 249 0 3150 59146082 59146369 Best 4380 4380;9107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:59146082-59146369&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 0.261904761905 0.505163636364 0.9528 -5.80740909091 6.31257272727 0.0081086505143 0.762242006931 37618 5164 5164;37618 -5.65661818182 0.5367 -12.9605363636 7.30391818182 -0.0158964191177 0.613905091548 44984 13225 13225;44984 0.0 0.0 ENST00000610729.1 NC not annotated potentially spurious 4382 546143 chr20:63572620-63572688- NoOverlap chr20 63572620 63572688 - 7.26289995468 23 0.499717708095 0.882912932531 6.37998702215 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;63572619;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A63572620-63572688-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A63572620-63572688&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.301644669217 0.444211573068 0.979228832034 62203973 62204041 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;62203972;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A63572620-63572688-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A62203973-62204041&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEVQGSGAQGGAGRAADAILTEFGGRFELLCSLCFR Same 547556 chr20:63572620-63572688- 4760 4760 -378 0 67 63572386 63573033 75 75;793;4382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:63572386-63573033&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.04545454545 20.4225043478 0.809 9.87935217391 10.5431521739 0.822211291317 0.994536575687 1593 412 412;1289;1593 33.4570565217 0.8679 5.32833043478 28.128726087 1.02736795894 1.05201585002 655 Best 655 655;1111;1190 0.0 0.071029760378 chr9:136840485-136840968+ ENST00000370082.1 NC pseudo-exon HELZ2 pseudo-exon 4383 474987 chr1:178482309-178482341- NoOverlap chr1 178482309 178482341 - 10.1164909059 11 0.92372431109 -0.895563439889 11.0120543458 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;178482308;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A178482309-178482341-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A178482309-178482341&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.360225961657 0.444154668982 1.03027587275 178451444 178451476 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;178451443;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A178482309-178482341-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A178451444-178451476&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADFTISTLMDPEEMKDQFLRQVR Same 476868 chr1:178482309-178482341- 3970 3970 413 0 541 178479544 178490348 820 820;978;4383;7753 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:178479544-178490348&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.424242424242 0.0 10.3564636364 0.9684 -2.51471818182 12.8711818182 0.522228913047 1.02741051888 2988 945 945;1732;2988;3553 11.4921181818 0.4208 -1.92547272727 13.4175909091 0.295000330507 0.83010322984 4680 1971 1971;3265;4680;7353 0.0 0.0 ENST00000623247.1,ENST00000462775.5 NC,AntiUTR3 protein-coding gene protein-coding gene ENSG00000188585 4391 562941 chr4:151179357-151179392- NoOverlap chr4 151179357 151179392 - 9.38940011958 12 0.884702830549 -0.619758166373 10.009158286 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;151179356;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151179357-151179392-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A151179357-151179392&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.387297189241 0.443731524859 1.03330818143 152100509 152100544 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;152100508;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151179357-151179392-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A152100509-152100544&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HTNFVLYQFIPSSTASRTSIQSELHRDR None NA NA 0 161 151175562 151187459 192 192;396;2038;2250;4391;9851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:151175562-151187459&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 1.28571428571 12.8086416667 0.9995 0.23815 12.5704916667 0.7109511785 1.0173346385 2039 84 84;931;1769;1951;1972;2039 21.35265 0.6684 -0.853741666667 22.2063916667 0.86137264978 1.00703299593 2268 878 878;883;2268;2607;3428;4439 0.0 0.0 ENST00000304527.8,ENST00000474743.5 UTR5,NC coding exon(s) SH3D19 5' coding exons 4402 572470 chr6:108177589-108177636+ NoOverlap chr6 108177589 108177636 + 4.40392497042 16 0.981795986877 -5.25047489582 9.65439986624 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108177588;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108177589-108177636%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108177589-108177636&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0256176387039 0.443342974278 1.05271099329 108498793 108498840 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108498792;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108177589-108177636%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108498793-108498840&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CYEYVVSYEWECSVND Same 573497 chr6:108177589-108177636+ 5487 5487 -1085 0 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 0.0182875 0.9977 -2.77268125 2.79096875 0.0184095340034 0.518880941559 33219 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 -5.0921625 0.3931 -6.26035 1.1681875 -0.0297320575121 0.405478226855 56884 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000368983.3,ENST00000484978.1 CDSintron,NCintron not annotated putative regulatory region 4418 490628 chr12:9491499-9491558+ NoOverlap chr12 9491499 9491558 + 6.1669850111 20 0.506686503395 -3.89763498902 10.0646200001 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9491498;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9491499-9491558%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9491499-9491558&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.161767432879 0.442651856837 1.04781107878 9644095 9644154 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9644094;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9491499-9491558%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9644095-9644154&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IQQWVNEESVGGILQLSFQLISEPILGWYEITMEMLNEK Same 492604 chr12:9491499-9491558+ 4555 4555 -137 0 666 9480562 9518314 1023 1023;1860;2492;4418;4887;28290;30014;57029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9480562-9518314&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.320855614973 8.862375 0.5573 -4.901875 13.76425 0.448132454451 1.051527463 3527 7 7;32;190;2502;3527;4447;12142;19347 23.268045 0.4336 -11.08167 34.349715 0.820997176073 1.00443299935 2406 4 4;8;122;2361;2406;2774;2953;4665 0.292266323374 chr12:31158886-31159054- 0.433675571635 chr12:31158886-31159054- ENST00000518709.5 NCintron pseudo-exon AC092821.1 pseudo exons 4431 485004 chr11:65497502-65497534+ NoOverlap chr11 65497502 65497534 + 9.64893620664 11 0.766951732939 -13.1626725197 22.8116087263 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;65497501;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A65497502-65497534%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A65497502-65497534&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.304009306352 0.441781558577 1.03003875647 65264973 65265005 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;65264972;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A65497502-65497534%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A65264973-65265005&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGARVRSHALRQPPQLR Same 486958 chr11:65497502-65497534+ 3276 3276 1155 0 1911 65487766 65500691 2793 2793;4431;9405 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:65487766-65500691&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.757575757576 1.54 12.6453818182 0.9292 -24.8955545455 37.5409363636 0.31856197698 1.09265282853 5229 Best 5229 5229;5912;13904 11.0610272727 0.3937 -25.9353181818 36.9963454545 0.393159100418 0.954332234508 4000 Best 4000 4000;11089;13439 0.0 0.0 not annotated putative regulatory region 4461 549538 chr22:21012531-21012617- NoOverlap chr22 21012531 21012617 - 4.28908628225 29 0.57858843524 -2.350510324 6.63959660625 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21012530;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21012531-21012617-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21012531-21012617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.181439515542 0.439934799873 1.03035841873 21366820 21366906 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21366819;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21012531-21012617-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21366820-21366906&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLASSLSSNPYVKWLNFWDSGLYGAGTEALAGALSKSSSICGR Same 550895 chr22:21012531-21012617- 4873 4873 -412 0 122 21011391 21013083 147 147;1701;4461;19244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21011391-21013083&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586206896552 0.0 6.25620344828 0.9063 -6.93580689655 13.1920103448 0.80629555827 1.06126267191 1647 445 445;1499;1647;3817 6.61744827586 0.4559 -10.538862069 17.1563103448 0.70316415343 1.04415953015 2798 542 542;1095;2798;3696 0.836336122045 chr22:21047884-21048016+ 0.58930955078 chr22:21047884-21048016+ ENST00000292748.7,ENST00000591411.5 NCintron,AntiNCintron pseudogene TUBA3FP transcribed unprocessed pseudogene (ENSG00000161149) 4476 492307 chr12:64780932-64781123+ NoOverlap chr12 64780932 64781123 + 5.46672817785 64 0.450662813764 3.25146246655 2.2152657113 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;64780931;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A64780932-64781123%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A64780932-64781123&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.516454413244 0.439287418734 0.759786454493 65174712 65174903 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;65174711;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A64780932-64781123%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A65174712-65174903&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGR Same 494289 chr12:64780932-64781123+ 4590 4590 -114 0 564 64780731 64781264 857 857;4476;48911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:64780731-64781264&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.791666666667 1.02728731942 3.8910390625 0.6457 1.3643265625 2.5267125 0.299704907029 0.723020494298 5625 1438 1438;5625;63661 5.327478125 0.5947 -1.125821875 6.4533 0.51168560153 0.78671785651 3489 354 354;3489;58706 0.0 0.0272438380356 chr3:33516981-33517174- coding exon(s) TBC1D30 5' extension. 4479 500710 chr14:22096564-22096605+ NoOverlap chr14 22096564 22096605 + 6.1171072615 14 0.960721097778 -3.32759281141 9.44470007292 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22096563;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22096564-22096605%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22096564-22096605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.206966428207 0.439200828755 1.04972253673 22564841 22564882 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22564840;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22096564-22096605%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22564841-22564882&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVALTISALQLEDSAKYFCALGELTVFEVIVK None NA NA 0 300 22086679 22096605 401 401;4479;18994;21810 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22086679-22096605&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.357142857143 0.0 1.2986 0.9271 -4.05281428571 5.35141428571 0.0498430337432 0.718904925167 23184 1541 1541;23184;43077;62785 4.33762142857 0.4151 -4.31079285714 8.64841428571 0.144152927181 0.703569530268 8294 2482 2482;8294;14730;26667 0.0 0.0 ENST00000390452.2 NC immunoglobulin segment overlaps an immunoglobulin region 4515 524091 chr18:26035825-26035971+ NoOverlap chr18 26035825 26035971 + 2.35278981802 49 0.911371552512 -3.03265294918 5.38544276721 ENST00000415083.6,ENST00000542420.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26035824;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26035825-26035971%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26035825-26035971&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.186490756853 0.437827143025 1.02277005299 23615789 23615935 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;23615788;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26035825-26035971%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A23615789-23615935&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VYRYLLRSNVVRNPHKAYRSLVQDTTVADNRNHYDLHQFDKRQEETLMATE Same 525527 chr18:26035825-26035971+ 4439 4439 76 0 548 26035069 26035971 832 832;4515;13026;18941 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26035069-26035971&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.43537414966 1.00586510264 0.135183673469 0.9999 -2.15253673469 2.28772040816 0.185505651524 0.640994987041 9434 2301 2301;9434;15794;27273 -7.35525306122 0.8473 -10.8124489796 3.45719591837 0.0548505950627 0.626201147368 17772 3626 3626;17772;65195;68131 0.0 0.0 ENST00000415083.6,ENST00000269138.9,ENST00000269137.11,ENST00000579640.5 AntiCDS,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 4516 475093 chr1:182390538-182390573- NoOverlap chr1 182390538 182390573 - 6.74598332246 12 0.736060883497 -6.3493163685 13.095299691 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;182390537;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A182390538-182390573-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A182390538-182390573&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.139901377596 0.437824216612 1.00109779859 182359673 182359708 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;182359672;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A182390538-182390573-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A182359673-182359708&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EERRERHSKKRRVK Same 476974 chr1:182390538-182390573- 4381 4381 135 0 584 182390538 182400521 892 892;1504;2032;4516 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:182390538-182400521&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 1.35 1.423875 0.8802 -16.4155916667 17.8394666667 0.249762303778 1.01133394046 6985 515 515;2315;3190;6985 1.56910833333 0.3306 -18.31175 19.8808583333 0.194080011007 1.03038784344 6413 2130 2130;3443;4050;6413 0.0 0.0 ENST00000311223.9,ENST00000480604.5,ENST00000331872.10,ENST00000462444.1 UTR5,NC,UTR5intron,NCintron coding exon(s) GLUL first exon 4525 537680 chr2:16227044-16227106- NoOverlap chr2 16227044 16227106 - 7.19650955427 21 0.831559290383 4.23410957023 2.96239998404 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;16227043;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A16227044-16227106-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A16227044-16227106&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.645060343705 0.437540139003 0.611979759216 16408312 16408374 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;16408311;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A16227044-16227106-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A16408312-16408374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LWQAAPLSAGQKLIPSSSPVPPTQGAGLAR Same 539051 chr2:16227044-16227106- 4448 4448 77 0 3259 16227044 16227106 Best 4525 4525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:16227044-16227106&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.603174603175 0.375 10.8746857143 0.995 4.69267619048 6.18200952381 0.732722947209 0.825895304313 1964 Best 1964 1964 9.38692380952 0.7025 2.53466666667 6.85225714286 0.396767177449 0.675942277418 3980 Best 3980 3980 0.0 0.0 ENST00000439745.1,ENST00000420404.1 NC,AntiNCintron not annotated potentially spurious 4529 505121 chr14:93926669-93926725- NoOverlap chr14 93926669 93926725 - 4.83281570516 19 0.771760369108 -3.39145785884 8.224273564 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;93926668;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A93926669-93926725-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A93926669-93926725&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.224069273046 0.437418648473 1.04701832525 94393015 94393071 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;94393014;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A93926669-93926725-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A94393015-94393071&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGGALMPVGKGGRGRTL*RGAGISMGR Same 506968 chr14:93926669-93926725- 4574 4574 -45 8 3263 93926359 93927414 Best 4529 4529;5519;7892;32325;72262 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:93926359-93927414&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.561403508772 0.777272727273 -2.58033157895 0.96 -11.2849789474 8.70464736842 0.0969209519109 0.962870158078 16200 8144 8144;12586;16200;29537;58582 -12.7500789474 0.8506 -22.2419052632 9.49182631579 -0.0148609187664 0.702053298585 44192 8416 8416;20263;26837;36661;44192 0.0 0.0 ENST00000554538.1,ENST00000267594.5,ENST00000557719.1 NCintron,AntiCDSintron,AntiUTR5intron not annotated potentially spurious 4542 496180 chr12:70445357-70445419- NoOverlap chr12 70445357 70445419 - 6.2091713349 21 0.421356817695 -8.54791914849 14.7570904834 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70445356;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70445357-70445419-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70445357-70445419&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.100132895458 0.436984755898 0.935393300495 70839137 70839199 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70839136;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70445357-70445419-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70839137-70839199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HWHIQHKTGIPYNSTGQAIVEQAHR Same 498180 chr12:70445357-70445419- 4020 4020 522 0 155 70445357 70448659 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.380952380952 0.0 4.04262380952 0.166 -4.09182857143 8.13445238095 0.0704635841344 0.967881695087 19614 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 15.7211 0.2032 -6.87016190476 22.5912619048 0.56145208156 1.05581630183 3303 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 4544 552948 chr3:100208198-100208245+ NoOverlap chr3 100208198 100208245 + 6.33120633743 16 0.745973525597 -2.65971265361 8.99091899104 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;100208197;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A100208198-100208245%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A100208198-100208245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.288321281055 0.436848650369 1.04880633276 99927042 99927089 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;99927041;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A100208198-100208245%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A99927042-99927089&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") THHFIEGLPAGNYSFNITYSILLYHFSF Same 553900 chr3:100208198-100208245+ 4689 4689 -145 0 354 100208048 100211682 486 486;1802;4544;9039 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:100208048-100211682&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.375 0.0 10.93825 0.9084 0.26615 10.6721 0.586746990136 1.01030799343 2616 241 241;657;2616;3530 42.65990625 0.9679 -5.52789375 48.1878 0.976340838064 0.979265981916 1488 1055 1055;1450;1488;1682 0.0 0.15859114785 chr14:61280092-61281147- pseudogene TMEM30C converted to a transcribed unitary pseudogene TMEM30CP (ENSG00000235156) due to disablement of the longer isoform, lack of expression data for last 4 exons and PMID:17258408. 4546 531994 chr19:51843199-51843309- NoOverlap chr19 51843199 51843309 - 3.69653769442 37 0.506044428498 -2.52405138857 6.22058908299 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51843198;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51843199-51843309-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51843199-51843309&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.116611940483 0.436792673458 1.03769944924 52346452 52346562 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52346451;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51843199-51843309-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52346452-52346562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLSSFNDVAVDFTWEEWNLLDPVQKNLYQDVMLENYNNLVSLGK Same 533471 chr19:51843199-51843309- 4950 4950 -404 0 3275 51843199 51843309 Best 4546 4546 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51843199-51843309&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.423423423423 0.0 3.30817027027 0.4599 -2.8394 6.14757027027 0.176301973599 0.945398188676 9903 Best 9903 9903 7.23251081081 0.3666 -8.36836756757 15.6008783784 0.710925101644 1.03023542743 2772 Best 2772 2772 0.126399205482 chr19:52018368-52018494- 0.442923575 chr19:52353682-52353808+ ENST00000594725.1 NC pseudogene zinc finger protein pseudogene (ENSG00000269483) 4553 505782 chr14:105597865-105597909- NoOverlap chr14 105597865 105597909 - 9.49955325077 15 0.590600442512 -0.270500063896 9.77005331467 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105597864;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105597865-105597909-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105597865-105597909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.3643516695 0.436522360146 1.04047384948 106064202 106064246 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106064201;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105597865-105597909-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106064202-106064246&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADWPGPPELDVCVEEAEGEAPWTWTGLCIFAALFLLSVSYSAAITLLMVGTHLQGPGQGR Same 507626 chr14:105597865-105597909- 4956 4956 -403 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.644444444444 0.947368421053 14.7731466667 0.9401 -8.55518666667 23.3283333333 0.748955134161 0.962459016313 1870 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 14.4403 0.4807 -17.9026533333 32.3429533333 0.706760525237 1.0165579894 2787 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.120851678847 chr17:78819930-78820012- ENST00000428654.1 NC immunoglobulin segment overlaps an immunoglobulin region 4580 498819 chr13:98396166-98396204+ NoOverlap chr13 98396166 98396204 + 9.73406157127 13 0.797078484192 1.0003152994 8.73374627187 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;98396165;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98396166-98396204%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A98396166-98396204&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.437031876035 0.435160317688 1.00439427704 99048420 99048458 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;99048419;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98396166-98396204%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A99048420-99048458&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WGQASAAAPEGRSLANGTPPMGAASK Same 500836 chr13:98396166-98396204+ 4638 4638 -58 0 183 98395479 98396402 221 221;647;961;993;1497;3791;4580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:98395479-98396402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641025641026 0.25 19.5529153846 0.9835 1.61051538462 17.9424 0.88681205601 1.00091730145 1340 101 101;518;673;881;952;1128;1340 41.7138538462 0.8875 -0.9824 42.6962538462 1.01478530721 1.0021098069 856 855 855;856;865;1168;1169;1303;3287 0.0 0.0732724306221 chr2:241441304-241442533+ ENST00000319562.10 CDSintron coding exon(s) FARP1 alternative final exon 4589 513468 chr16:20721047-20721181- NoOverlap chr16 20721047 20721181 - 5.31952221062 45 0.293995574884 -1.24393557707 6.5634577877 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20721046;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721047-20721181-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20721047-20721181&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.152670980841 0.434695204438 1.05487694638 20732369 20732503 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20732368;135;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721047-20721181-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20732369-20732503&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IIQASPLTSSSLVIGNLALTGIPFLTGFYSKDLIIKAANTLYTST*ALFITLSPLS Same 515115 chr16:20721047-20721181- 5099 5099 -510 6 1174 20720997 20722053 1782 1782;2457;4589;12301;12422;13695;22010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20720997-20722053&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.459259259259 0.366847826087 -0.483688888889 0.014 -0.34102 -0.142668888889 0.0205922614895 0.393449234339 32372 26036 26036;26102;32372;32727;36194;41718;53953 30.6925977778 0.6854 -2.84794666667 33.5405444444 0.976525935624 0.980856669013 1485 937 937;1188;1352;1485;1530;1845;1949 0.0 0.900786732246 chrM:12337-14148+ ENST00000561584.5,ENST00000501740.6 AntiUTR5intron,AntiNCintron pseudogene mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene (ENSG00000283399) 4591 539879 chr2:110403296-110403421- NoOverlap chr2 110403296 110403421 - 5.5925833292 42 0.382292631709 0.773642851927 4.81894047727 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110403295;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110403296-110403421-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110403296-110403421&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.233392159558 0.434567449975 0.964408011355 111160873 111160998 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111160872;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110403296-110403421-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111160873-111160998&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEPPHGKPSCSASVFSLQATSIAEVLCLTAYFGRLVHFAKVTPQMVFWKDTKDICTMVTTVASVHCSTCK Same 541239 chr2:110403296-110403421- 5148 5148 -557 0 1194 110397399 110408025 1806 1806;2085;2438;3107;4591;8217;15827;15899 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110397399-110408025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.0 15.4409595238 0.7759 6.17932619048 9.26163333333 1.04829787455 1.04018654763 279 48 48;279;480;726;1001;1821;1905;2030 40.87335 0.8006 13.8882809524 26.9850690476 0.955117170795 1.04392753288 1758 350 350;364;877;881;1131;1304;1506;1758 0.0 0.0 ENST00000483717.5,ENST00000488671.1 NC,NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000184115) 4603 588814 chr9:35300980-35301087+ NoOverlap chr9 35300980 35301087 + 4.08778609667 36 0.909554690878 0.495377721886 3.59240837478 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35300979;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35300980-35301087%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35300980-35301087&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.524258913275 0.433970501458 0.821415192612 35300977 35301084 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35300976;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35300980-35301087%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35300977-35301084&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DTAISFPELTGVQCAVGSLFSSLTEKVGSGTKHLTNSVEKLVSLVPEK Same 589757 chr9:35300980-35301087+ 4652 4652 -49 0 5 35300167 35307879 5 5;669;1004;1082;1090;2464;3976;4603;5133;9301;65975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35300167-35307879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.0 3.35239722222 0.9972 -2.55437222222 5.90676944444 0.516789151003 0.925404282042 3035 565 565;1736;1846;2357;2445;2557;2989;3035;3218;3591;8325 23.6226222222 0.9206 2.65161666667 20.9710055556 1.0187012425 1.04483192666 802 420 420;802;1067;1389;1934;2365;2375;2403;2753;3466;5635 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron coding exon(s) UNC13B cassette exon 4607 579668 chr7:142392379-142392420+ NoOverlap chr7 142392379 142392420 + 5.35387857471 14 0.84046365628 -4.81000704212 10.1638856168 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142392378;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142392379-142392420%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142392379-142392420&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.121359378186 0.433788531326 1.04971117642 142239570 142239529 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142239569;-40;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142392379-142392420%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142239570-142239529&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FSAQQFPDLHSELNLSSLELGDSALYFCASSVAQPCMSISLLCNNIPAPLR None NA NA 0 362 142381077 142408131 503 503;2671;2771;4607;6492;14294;16204;21550;22314 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142381077-142408131&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.547619047619 0.323076923077 0.66165 0.8614 -6.46092857143 7.12257857143 0.0540000366851 0.848312716809 22326 2259 2259;2284;2682;2903;3300;3654;22326;44473;52081 5.61707857143 0.5158 -8.15827142857 13.77535 0.321733385107 0.886935912133 4428 2619 2619;2643;2937;3046;3257;3635;4345;4428;8592 0.0 0.0 ENST00000390363.2 NC immunoglobulin segment overlaps an immunoglobulin region 4611 537373 chr2:240568614-240569123+ NoOverlap chr2 240568614 240569123 + 3.8400899584 170 0.312571279828 1.86727824717 1.97281171123 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;240568613;510;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240568614-240569123%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A240568614-240569123&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.408828376172 0.433723382886 0.826767504737 241508031 241508540 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;241508030;510;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240568614-240569123%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A241508031-241508540&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QAPGAEAAPVRPPPEPPPALDVASASSAQLFRLRHLQLGLELRPEARELAGCLVLELCALRPAPRALVLDAHPALRLHSAAFRRAPAAAAETPCAFAFSAPGPGPAPPPPLPAFPEAPGSEPACCPLAFRVDPFTDYGSSLTVTLPPELQAHQPFQVILRYTSTDAPAVSPGR Same 538744 chr2:240568614-240569123+ 5701 5701 -1090 0 187 240560378 240572566 225 225;4611;43454;53343;54932;58666;60196 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:240560378-240572566&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.796078431373 1.08841463415 4.49791411765 0.5921 1.02661588235 3.47129823529 0.600347156135 0.898650111304 2542 635 635;2542;29313;56709;59851;60661;63450 6.53413529412 0.6811 -4.55541764706 11.0895529412 0.887708172705 0.919977834925 2162 1672 1672;2162;18782;46446;66739;70450;73682 0.00331134154762 chr1:201982667-201983113+ 0.252395549861 chr1:201982667-201983113+ ENST00000270357.8,ENST00000486058.5,ENST00000451363.5,ENST00000418708.3,ENST00000418505.3 UTR5,NC,UTR5intron,AntiUTR5,AntiNC coding exon(s) RNPEPL1 extended 5' 4614 534690 chr2:109968070-109968201+ NoOverlap chr2 109968070 109968201 + 5.91470912912 44 0.375295643549 1.68190677633 4.23280235278 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;109968069;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109968070-109968201%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A109968070-109968201&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.278331108703 0.433644391911 0.923103944352 110725647 110725778 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110725646;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109968070-109968201%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110725647-110725778&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEPPHGKPSCSASVFSLQATSIAEVLCLTAYFGRLVHFAKVTPQMVFWKDTKDICTMVTTVASVHCSTCK Same 536042 chr2:109968070-109968201+ 5223 5223 -609 0 674 109963466 109974092 1038 1038;1288;1607;3960;4614;5824;6691;9138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:109963466-109974092&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.462121212121 0.142857142857 9.78930227273 0.5402 4.03774090909 5.75156136364 0.597952060847 0.93039260774 2554 1343 1343;1741;2554;2750;2805;2859;2974;4366 35.1401363636 0.7461 11.2849590909 23.8551772727 0.98302023704 1.04478951465 1375 119 119;225;546;552;1151;1223;1320;1375 0.0 0.0 ENST00000303002.11,ENST00000454928.5 NC,NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000186148) 4619 479622 chr10:129852034-129852078+ NoOverlap chr10 129852034 129852078 + 4.99805339575 15 0.908468248519 -4.53882664839 9.53688004414 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129852033;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129852034-129852078%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129852034-129852078&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.113622074861 0.433310945343 1.05239055305 131650298 131650342 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131650297;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129852034-129852078%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131650298-131650342&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESHSMPNEASSRAACERPDIR Same 481527 chr10:129852034-129852078+ 4734 4734 -115 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.3125 2.31340666667 0.9618 -5.36962 7.68302666667 0.176418290192 0.895021746134 9892 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 0.33428 0.6989 -10.15126 10.48554 0.170130523433 0.786420636716 7146 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 4626 560726 chr4:185071450-185071518+ NoOverlap chr4 185071450 185071518 + 5.12257387586 23 0.893218691638 -0.290143430233 5.4127173061 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;185071449;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A185071450-185071518%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A185071450-185071518&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.452887725973 0.432591774844 0.91749287693 185992604 185992672 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;185992603;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A185071450-185071518%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A185992604-185992672&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEMNGRHWQGLKLGDECGNVEWMFLFFGFELTVVSVCFLELIR Same 561714 chr4:185071450-185071518+ 4664 4664 -38 0 3332 185071430 185071645 Best 4626 4626;13043;31204;57826;61815 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:185071430-185071645&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.449275362319 0.0 2.87642173913 0.9988 -1.02426956522 3.90069130435 0.24864425622 0.68139749693 7014 5256 5256;7014;8229;65721;70306 -4.87589565217 0.8759 -8.99980434783 4.12390869565 0.0229502217068 0.573349603311 26011 Best 26011 26011;49583;61981;65284;66794 0.0 0.0 ENST00000509017.5 NCintron not annotated potentially spurious 4627 572515 chr6:109255437-109255466+ NoOverlap chr6 109255437 109255466 + 11.4294401765 10 0.827405203326 -9.62696995735 21.0564101338 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109255436;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109255437-109255466%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109255437-109255466&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.332371383199 0.432582477008 0.978601828749 109576640 109576669 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109576639;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109255437-109255466%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109576640-109576669&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EDHLDNSNTFGLPLNIVCK Same 573542 chr6:109255437-109255466+ 4026 4026 601 0 198 109254451 109270128 241 241;379;398;784;1262;1279;1591;1821;4627;6101 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109254451-109270128&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 19.40038 1.0 -13.16527 32.56565 0.519431520046 0.985070914518 3012 103 103;138;267;470;609;712;856;2049;2971;3012 23.72073 0.7186 -20.18225 43.90298 0.942636379428 0.963323349269 1862 235 235;262;499;654;818;864;1043;1677;1862;2261 0.0 0.0 ENST00000453496.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 4665 491313 chr12:49032447-49032473+ NoOverlap chr12 49032447 49032473 + 6.27767790688 9 0.892301823453 -6.40381113357 12.6814890405 ENST00000301067.11 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;49032446;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49032447-49032473%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A49032447-49032473&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.045469089749 0.430921766418 1.01588574782 49426230 49426256 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49426229;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49032447-49032473%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49426230-49426256&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGLRLGLGLDK Same 493290 chr12:49032447-49032473+ 4416 4416 249 0 27 49020566 49033910 27 27;1869;2293;3141;4665;5179;14171;29832;59889;70464 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:49020566-49033910&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 0.0 3.31332222222 0.9929 -14.3267555556 17.6400777778 0.254969618953 1.00825546538 6825 391 391;2014;2802;4299;4455;6825;32787;42176;48473;48787 -31.4628444444 0.7724 -44.9226333333 13.4597888889 0.0260504711897 0.367666583044 24986 2210 2210;2935;3946;7899;19234;24986;25843;31483;36637;57651 0.0 0.0553691270532 chrX:54928603-54931020+ ENST00000301067.11 AntiCDS not annotated potentially spurious 4674 520069 chr17:5500741-5500902- NoOverlap chr17 5500741 5500902 - 4.78126856685 54 0.770323463007 3.1511444764 1.63012409045 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;5500740;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A5500741-5500902-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A5500741-5500902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.706806926971 0.430477780718 0.655204239072 5404061 5404222 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;5404060;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A5500741-5500902-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A5404061-5404222&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPWGLEQIRPDPESEGLFDKPPPEDPPAARGPRSASAAGKKAGRRAGGRAQGGRAGQPPKAASRPPPK Same 521476 chr17:5500741-5500902- 4881 4881 -207 0 78 5500603 5500902 89 89;4674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:5500603-5500902&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.79012345679 0.950146627566 6.36468888889 0.8472 3.42904259259 2.9356462963 0.551865670567 0.757316251339 2806 840 840;2806 6.16229444444 0.3251 3.85989814815 2.3023962963 0.238275437466 0.613227960697 5413 3140 3140;5413 0.0 0.0722287953258 chr6:29723464-29723527+ ENST00000568641.1,ENST00000544378.6 NC,NCintron under investigation; now made coding A 119aa single exon CDS in the 3' UTR of NLRP1 [chr17:5500956-5500597] was initially thought to be an alternative coding exon. However, after revaluation it became clearer that the evidence linking the two loci together is weaker than that which separates them. Specifically, the 119aa CDS can be defined on a single-exon gene model that shows a brain-specific expression profile that differs from the general expression profile of NLRP1. Following the completion of the analytical work presented here, it was decided to annotate a protein-coding gene, and ENSG00000286190 appeared in GENCODEv31. 4677 547899 chr22:16844398-16844508+ NoOverlap chr22 16844398 16844508 + 3.58781349659 37 0.508368336292 -2.64820527869 6.23601877528 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;16844397;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A16844398-16844508%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A16844398-16844508&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.106167639223 0.430213552319 1.03871886237 17325288 17325398 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;17325287;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A16844398-16844508%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A17325288-17325398&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DELWNLAQPCIHPPDRSASHNPMYQKQHLFNSNLHWDSRAFRRLSHLVRETHLNFSR Same 549313 chr22:16844398-16844508+ 5106 5106 -429 0 702 16844398 16846040 1086 1086;1985;4677;27537 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:16844398-16846040&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.612612612613 0.406593406593 2.38685405405 0.1851 -2.30892972973 4.69578378378 0.0710200000862 0.837938520092 19551 14497 14497;19551;22883;31233 23.9963216216 0.5213 -2.50952702703 26.5058486486 1.10435299707 1.03869773784 45 Best 45 45;67;2554;4162 0.0 0.0 pseudogene uncharacterised pseudogene (ENSG00000283535) 4681 505961 chr15:21614891-21614980+ NoOverlap chr15 21614891 21614980 + 6.65657666028 30 0.377558556497 0.355149999509 6.30142666077 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;21614890;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21614891-21614980%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A21614891-21614980&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.190757983648 0.429994004677 1.01077713988 22345433 22345522 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;22345432;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21614891-21614980%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A22345433-22345522&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELTQSSLYLWISSDYSNFLLCSVYLYLSPSTTFPLDKAVSVFYTTITPMLNPLIYTLRNEE Same 507672 chr15:21614891-21614980+ 5319 5319 -638 0 509 21609137 21614980 756 756;2089;3812;4681;5034;9481;63060 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:21609137-21614980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.0 20.3840766667 0.8015 6.54676333333 13.8373133333 0.963163429729 1.04800104959 1013 347 347;392;1003;1013;1063;1118;2359 45.8895166667 0.8452 -11.59788 57.4873966667 1.00801292016 0.977662068433 977 949 949;977;1339;1358;1773;2103;2551 0.0 0.298465258422 chr11:55993681-55994625- ENST00000625989.2 NCintron pseudogene (shared cluster) two olfactory receptor pseudogenes in close proximity (ENSG00000285491 & ENSG00000285116) 4684 584055 chr8:39557357-39557395+ NoOverlap chr8 39557357 39557395 + 6.95263085457 13 0.740462817872 -4.62403066342 11.576661518 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;39557356;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A39557357-39557395%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A39557357-39557395&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.210612210062 0.429940361344 1.03324417302 39414876 39414914 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;39414875;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A39557357-39557395%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A39414876-39414914&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIDLCGFTEYYNGTSEFCVPDVK Same 584985 chr8:39557357-39557395+ 4798 4798 -114 0 3376 39557357 39558448 Best 4684 4684;11054;68564 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:39557357-39558448&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 6.67637692308 0.7805 -18.5545923077 25.2309692308 0.407842948116 0.958222290208 3923 Best 3923 3923;5907;25343 14.7349923077 0.3542 -15.0039769231 29.7389692308 0.474202971472 1.04776885146 3640 Best 3640 3640;5072;8540 0.14323999081 chr8:39667998-39668196+ 0.323193275304 chr8:39667998-39668196+ ENST00000518465.1 NCintron pseudogene extension ADAM family pseudogene extended ENSG00000254067 4691 581616 chr7:81570403-81570444- NoOverlap chr7 81570403 81570444 - 4.65196434302 14 0.902098115511 -5.53256424836 10.1845285914 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;81570402;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81570403-81570444-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A81570403-81570444&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0117790583915 0.429480406967 1.04865138066 81199719 81199760 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;81199718;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81570403-81570444-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A81199719-81199760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FASACLLGSGEVTLAYPLDYEDIGTPK Same 582575 chr7:81570403-81570444- 4780 4780 -89 0 592 81560120 81607572 904 904;925;973;1260;1465;2153;3581;4237;4691;5577 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:81560120-81607572&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.452380952381 0.0 4.12286428571 0.9499 -13.9682357143 18.0911 0.447228271976 0.993844961033 3532 1152 1152;1609;1628;2206;2439;2771;3071;3088;3130;3532 7.26323571429 0.4499 -16.2773928571 23.5406285714 0.485799934009 1.06874110743 3585 2526 2526;2821;2931;3052;3114;3116;3529;3585;4138;5392 0.0 0.0 pseudogene unitary pseudogene ENSG00000233491 4703 505846 chr14:105856177-105856215- NoOverlap chr14 105856177 105856215 - 10.6755537437 13 0.669213749552 -4.68849218809 15.3640459317 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105856176;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105856177-105856215-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105856177-105856215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.405294782333 0.428788852011 0.980298619412 106322282 106322320 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106322281;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105856177-105856215-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106322282-106322320&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGSSSPSLSLLSCGSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWK None NA NA 0 63 105837465 105856215 70 70;297;303;618;1534;1768;2725;3071;4703;4966;9883;19584;21248 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105837465-105856215&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.615384615385 0.821052631579 16.0054769231 0.7878 -9.23371538462 25.2391923077 0.488142587238 0.966039360736 3220 171 171;488;606;760;1848;2075;2155;2623;3063;3220;4742;9758;24097 20.6867307692 0.5185 -15.8153769231 36.5021076923 0.756987427733 0.998257162707 2612 30 30;154;1395;1760;1980;1989;2291;2612;2659;3437;3454;6249;20954 0.0 0.0 ENST00000390559.6,ENST00000612473.1 NC,NCintron coding exon(s) IGHM alternative final coding exons 4708 504674 chr14:74194173-74194217- NoOverlap chr14 74194173 74194217 - 4.84720683495 15 0.911802853437 -4.72883987824 9.57604671319 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;74194172;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A74194173-74194217-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A74194173-74194217&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0883981502616 0.428484114992 1.05237865562 74660876 74660920 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;74660875;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A74194173-74194217-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A74660876-74660920&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GMRDYQRHPG*RDWVQNLSQDQPSLPGLCTFPQ Same 506519 chr14:74194173-74194217- 4860 4860 -152 5 1375 74188570 74194217 2058 2058;4708 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:74188570-74194217&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.3515625 -1.31939333333 0.9862 -12.3690466667 11.0496533333 0.152044166362 1.0344894811 11436 Best 11436 11436;31210 -4.90479333333 0.6082 -16.1298133333 11.22502 0.0833766244787 0.801703564593 13345 Best 13345 13345;52978 0.0 0.0 ENST00000554938.1,ENST00000553404.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 4742 488238 chr11:62832028-62832078- NoOverlap chr11 62832028 62832078 - 7.16165284681 17 0.881287502412 1.39298814886 5.76866469795 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;62832027;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A62832028-62832078-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A62832028-62832078&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.491592146765 0.426391721602 0.886570322652 62599500 62599550 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;62599499;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A62832028-62832078-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A62599500-62599550&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTAPSSLGVGLRVGDVAASSLWSGFGGFSAR Same 490215 chr11:62832028-62832078- 4634 4634 108 0 301 62832028 62832534 402 402;4742 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:62832028-62832534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.607843137255 1.34210526316 0.0460470588235 0.9875 -2.37655882353 2.42260588235 0.0162209321781 0.494920282359 34114 281 281;34114 -0.0123470588235 0.3871 -2.41474705882 2.4024 0.0137356302728 0.470454973447 29246 363 363;29246 0.0 0.0 ENST00000294179.7,ENST00000486437.1 UTR5,NC protein-coding gene protein-coding gene ENSG00000283268 4751 469587 chr1:244272482-244272508+ NoOverlap chr1 244272482 244272508 + 6.55655546983 9 0.951223688784 -5.59681084421 12.153366314 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244272481;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244272482-244272508%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244272482-244272508&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0262515798522 0.425910018252 1.02756443077 244435784 244435810 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244435783;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244272482-244272508%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244435784-244435810&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPFVASPSSWPACPALLPHNTHSGQ Same 471468 chr1:244272482-244272508+ 4731 4731 20 0 1112 244272482 244272921 1692 1692;4751;38141;71945 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244272482-244272921&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 0.0 4.95878888889 0.9566 -5.39125555556 10.3500444444 0.159650364655 0.969297956218 10917 10628 10628;10917;36623;72255 3.6676 0.4124 -9.38223333333 13.0498333333 0.0961344836589 0.823470380505 11898 Best 11898 11898;16363;44560;66715 0.0 0.0 not annotated putative regulatory region 4756 510874 chr16:21339005-21339031+ NoOverlap chr16 21339005 21339031 + 9.78105534448 9 0.908506904707 -3.74202222294 13.5230775674 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;21339004;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A21339005-21339031%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A21339005-21339031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.216202207103 0.425851962181 1.00765275579 21350326 21350352 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;21350325;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A21339005-21339031%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A21350326-21350352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VEPAPVIQSSDPTLIFIFLLFYAIATICFSFMVSTFFSR Same 512512 chr16:21339005-21339031+ 4398 4398 358 0 20 21338456 21339031 20 20;2929;4756 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:21338456-21339031&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.37037037037 0.0 16.6509111111 0.84 -6.91158888889 23.5625 0.382042016564 0.956694210182 4234 3325 3325;3625;4234 21.1235666667 0.4179 -3.93967777778 25.0632444444 0.469946527441 1.02742581818 3652 3279 3279;3580;3652 0.0 0.323494785118 chr16:2317283-2317403- pseudogene ATP-binding cassette, sub-family A (ABC1), member 15 (Abca15) unprocessed pseudogene (ENSG00000189149) 4757 559341 chr4:82285065-82285130+ NoOverlap chr4 82285065 82285130 + 4.43174992773 22 0.801154830521 -2.55024545843 6.98199538616 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;82285064;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A82285065-82285130%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A82285065-82285130&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.270042442629 0.425757572096 1.01822921223 83206218 83206283 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;83206217;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A82285065-82285130%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A83206218-83206283&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLSFTGPPAMTIMYSCIANGRAVLAELTLTGGSYQVPPDPR Same 560326 chr4:82285065-82285130+ 4776 4776 -19 0 540 82285065 82295757 819 819;2323;4757;63026 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:82285065-82295757&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.560606060606 0.582352941176 8.33119090909 0.9025 -1.43200909091 9.7632 0.637106272345 1.02612973029 2366 1977 1977;2332;2366;32061 9.55627272727 0.3253 -0.709990909091 10.2662636364 0.368521101904 0.814251322234 4126 3193 3193;3988;4126;35871 0.0 0.0 pseudogene unitary pseudogene ENSG00000284516 4761 584699 chr8:78648665-78648721+ NoOverlap chr8 78648665 78648721 + 5.21288940781 19 0.476218011268 -12.8714105832 18.084299991 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78648664;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78648665-78648721%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78648665-78648721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0625411979444 0.425683962189 0.97002430232 79560900 79560956 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79560899;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78648665-78648721%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79560900-79560956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLLSAHHHPLYITHIHSHSGLPSPLSEENAR Same 585630 chr8:78648665-78648721+ 3046 3046 1715 0 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.421052631579 0.0 -2.29175263158 0.0451 -2.81629473684 0.524542105263 0.0304444741799 0.343015385728 28516 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 12.3596263158 0.1654 -9.50258947368 21.8622157895 0.427182710865 1.05611010892 3831 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 4762 521800 chr17:45519290-45519352- NoOverlap chr17 45519290 45519352 - 7.64553329561 21 0.522896162356 1.40809527181 6.2374380238 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;45519289;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45519290-45519352-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A45519290-45519352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.324795400511 0.425683152437 0.954241358336 43596656 43596718 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;43596655;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45519290-45519352-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A43596656-43596718&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVSFLTAEEESVGNPEGAFMKMLQARKNYTSTELTVEPEEPSDSSGINLSGFGSEQLDTNDESDVISALSYICHISQQ Same 523225 chr17:45519290-45519352- 5158 5158 -396 0 76 45517900 45519352 86 86;4762;12425;22792 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:45517900-45519352&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.323076923077 12.939652381 0.7825 2.11715714286 10.8224952381 0.681251210074 1.03152907687 2157 1028 1028;2157;2339;6777 10.5381190476 0.3277 -0.487919047619 11.0260380952 0.393914911656 0.831535414308 3994 2008 2008;3658;3994;7340 0.881117426419 chr17:46548312-46549843+ 0.837333850151 chr17:46548312-46549843+ ENST00000581296.1 NCintron pseudogene LRRC37A4P transcribed unprocessed pseudogene (ENSG00000282331) 4773 505786 chr14:105600473-105600613- NoOverlap chr14 105600473 105600613 - 3.4755041887 47 0.476443479122 -1.8155999878 5.2911041765 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105600472;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600473-105600613-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105600473-105600613&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.130436107275 0.425248965196 1.01297706276 106066810 106066950 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106066809;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600473-105600613-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106066810-106066950&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGEPWAGR None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.581043956044 9.67328510638 0.9652 -4.54874893617 14.2220340426 1.05724876237 0.988790570297 182 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 10.7835340426 0.5447 -12.3280425532 23.1115765957 1.05169257268 1.06122815948 304 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0959406201839 chr16:28320076-28320921+ ENST00000390541.2 NC immunoglobulin segment overlaps an immunoglobulin region 4782 548096 chr22:21660896-21660946+ NoOverlap chr22 21660896 21660946 + 6.79968826823 17 0.782570606636 -0.128258943558 6.92794721179 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21660895;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21660896-21660946%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21660896-21660946&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.410236661585 0.424803372902 0.97705946145 22015185 22015235 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;22015184;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21660896-21660946%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A22015185-22015235&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPEPNLLWDRLTSPCLPPTLLPPLPLPPPWSPW Same 549516 chr22:21660896-21660946+ 4788 4788 -6 0 73 21657814 21660946 82 82;492;4782 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21657814-21660946&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.686274509804 0.408 5.48647058824 0.953 -7.91867058824 13.4051411765 0.523959594706 1.05822644704 2975 29 29;584;2975 5.48647058824 0.2979 -7.91867058824 13.4051411765 0.245071789119 0.897960008159 5288 278 278;2568;5288 0.0 0.0 ENST00000498589.1 NC pseudogene unitary pseudogene (ENSG00000284630) 4783 483236 chr11:1085807-1085842+ NoOverlap chr11 1085807 1085842 + 12.9597748915 12 0.693489483991 1.27096655716 11.6888083344 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1085806;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1085807-1085842%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1085807-1085842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.439182280971 0.424747963787 1.00672375393 1083803 1083838 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1083802;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1085807-1085842%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1083803-1083838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IHMDCSNLTALATSKPRALSCQTLAAGYVR Same 485166 chr11:1085807-1085842+ 5466 5466 -683 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.805555555556 0.727272727273 20.8377666667 0.8944 5.247725 15.5900416667 0.660514867862 0.989327055745 2256 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 15.1812 0.5922 -6.69311666667 21.8743166667 0.693934100215 1.02322551147 2834 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0836651892476 chr11:1176151-1176251+ 0.115495897082 chr7:149790283-149790519+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 4791 486537 chr11:125948481-125948516+ NoOverlap chr11 125948481 125948516 + 11.5602498651 12 0.726380305689 -2.17091651758 13.7311663826 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125948480;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125948481-125948516%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125948481-125948516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.418673235296 0.424341031345 1.00672193611 125818376 125818411 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125818375;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125948481-125948516%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125818376-125818411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLGEALVGVTEPLFQLDPVNRTHLGWYMCSASNSVNR Same 488499 chr11:125948481-125948516+ 5404 5404 -613 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.3 15.037275 0.8582 -1.32728333333 16.3645583333 0.527166607953 1.0183948686 2951 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 34.700825 0.7841 2.85528333333 31.8455416667 1.03710607098 1.03533094325 521 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0912783424001 chr19:51340433-51340726- protein-coding gene protein-coding gene ENSG00000283703 4803 530322 chr19:15440331-15440405- NoOverlap chr19 15440331 15440405 - 5.07871196389 25 0.773852750439 0.100251979828 4.97845998406 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15440330;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15440331-15440405-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15440331-15440405&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.444087394792 0.423874463859 0.892689284338 15551142 15551216 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15551141;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15440331-15440405-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15551142-15551216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FDWLQDEDEQGSPQDAGLHLDLPAQPPPLAPFRRVFVPVEDTPK Same 531785 chr19:15440331-15440405- 4814 4814 -11 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.693333333333 0.340909090909 10.383544 0.9339 -0.14334 10.526884 0.835325083279 1.04757316744 1535 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 9.946324 0.4968 -7.929196 17.87552 0.75987591884 1.03321528387 2605 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.0 ENST00000263381.11 CDSintron coding exon(s) WIZ 2 cassette exons 4819 540170 chr2:132668677-132668706- NoOverlap chr2 132668677 132668706 - 9.01333992481 10 0.906726176852 -2.95307997465 11.9664198995 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;132668676;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A132668677-132668706-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A132668677-132668706&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.242712164042 0.4232594732 1.03018902992 133426250 133426279 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;133426249;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A132668677-132668706-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A133426250-133426279&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YPRRPLPVSATSSPTR Same 541532 chr2:132668677-132668706- 4506 4506 313 0 268 132668677 132673137 349 349;4819;25599;29906;42467 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:132668677-132673137&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 0.803571428571 0.70348 0.97 -14.35985 15.06333 0.151921722895 1.04724630802 11448 117 117;11448;18835;33618;70710 -8.67311 0.4904 -21.22122 12.54811 -0.00534405882151 0.78244326634 38224 183 183;28002;37490;38224;49163 0.0 0.0 ENST00000397463.2,ENST00000345008.6,ENST00000449209.1 CDSintron,UTR5intron,NCintron coding exon(s) NCKAP5 alternative final exon 4831 654718 chr17:48598152-48598301+ Extension chr17 48598152 48598301 + 3.95235202789 50 0.903140306706 1.66462198555 2.28773004234 chr17:48597741-48598301+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48598151;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48598152-48598301%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48598152-48598301&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.598019743775 0.422878502004 0.724733353499 46675514 46675663 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46675513;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48598152-48598301%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46675514-46675663&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELIGRGGARGRCCSAGFMICCVL*SERRAY**YIRDWVLAEGGWRGASEGQKEIQPSDPTLTNGR Same 655343 chr17:48598152-48598301+ 4809 4809 22 29 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.593333333333 1.12068965517 -0.428012 0.9967 -1.232838 0.804826 0.0856198024293 0.491286045525 17536 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -10.918148 0.8612 -12.004536 1.086388 -0.0302274717459 0.50882228648 57297 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000484302.3,ENST00000490419.1,ENST00000552000.2 NCintron,AntiUTR5,AntiNC,AntiNCintron not annotated putative regulatory region 4835 543324 chr20:36207052-36207099+ NoOverlap chr20 36207052 36207099 + 5.85904354416 16 0.843337529564 -2.48995004594 8.3489935901 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;36207051;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36207052-36207099%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A36207052-36207099&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.285258436148 0.422677882046 1.03808089043 34794974 34795021 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;34794973;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36207052-36207099%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A34794974-34795021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EASAFLHMEVIIPLPASPGHSEDLAALEEASPSPTSHGSGEPSELR Same 544713 chr20:36207052-36207099+ 4759 4759 76 0 105 36205843 36208375 125 125;723;906;1185;1244;1425;3209;4167;4835;30161 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:36205843-36208375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.541666666667 0.0 11.411375 0.9491 -3.33965625 14.75103125 0.723671146145 1.04021303908 1995 172 172;398;1291;1366;1423;1562;1733;1995;6918;10311 5.556725 0.5037 -15.463925 21.02065 0.512460966399 1.05941854224 3488 1508 1508;2023;2148;2169;2610;3152;3488;3607;4506;5668 0.0 0.0 ENST00000202028.9 CDSintron coding exon(s) EPB41L1 three consectutive cassette exons 4852 542162 chr2:227728331-227728420- NoOverlap chr2 227728331 227728420 - 7.41283675581 30 0.776271712317 7.3551133275 0.057723428309 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227728330;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227728331-227728420-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227728331-227728420&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.8648601921 0.42171323531 0.317371379203 228593047 228593136 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228593046;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227728331-227728420-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228593047-228593136&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLQVVQLPQPPPQPPPQPPPQPPQPPPQPPQLPQPQQPMVSVK Same 543539 chr2:227728331-227728420- 5092 5092 -240 0 1076 227724476 227728420 1636 1636;2064;4852 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227724476-227728420&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.589198036007 11.6716633333 0.8208 14.39158 -2.71991666667 0.298957965799 0.153328199813 5645 124 124;1815;5645 12.1460366667 0.5473 16.1855666667 -4.03953 0.194763821398 0.283919907263 6389 1783 1783;3598;6389 0.00347512600092 chr9:106924133-106929759+ 0.198890094485 chr1:26731152-26731604+ protein-coding gene protein coding gene ENSG00000284725 4866 540662 chr2:159712316-159712387- NoOverlap chr2 159712316 159712387 - 5.25094168882 24 0.808581928232 0.435554346691 4.81538734213 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;159712315;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159712316-159712387-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A159712316-159712387&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.474346614224 0.42123523476 0.868907448218 160568827 160568898 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;160568826;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159712316-159712387-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A160568827-160568898&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YPTAGWCSDCGNR*RAAPGESARRHW Same 542028 chr2:159712316-159712387- 4805 4805 61 11 3512 159712300 159712541 Best 4866 4866;24749;27109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:159712300-159712541&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.722222222222 0.75 2.53787916667 0.9338 -3.07128333333 5.6091625 0.255294355583 0.829449816861 6812 Best 6812 6812;24038;52172 1.26060416667 0.3231 -3.28493333333 4.5455375 0.0804739519741 0.609393315185 13743 Best 13743 13743;35317;47510 0.0 0.0 ENST00000453016.5 NC not annotated putative regulatory region 4874 491872 chr12:54259577-54259669+ NoOverlap chr12 54259577 54259669 + 4.03937420153 31 0.97358761755 -0.757735551365 4.79710975289 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;54259576;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A54259577-54259669%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A54259577-54259669&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.408846331506 0.420859284577 0.916965185989 54653361 54653453 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;54653360;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A54259577-54259669%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A54653361-54653453&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGSWRAGSSPAPTQLPGRHCAAVPVRCHSNWQQYYTK Same 493850 chr12:54259577-54259669+ 5678 5678 -804 0 3518 54259577 54262648 Best 4874 4874;23728;33864 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:54259577-54262648&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.698924731183 0.362573099415 -1.10491290323 0.9996 -5.07756451613 3.9726516129 0.101255281634 0.718264678261 15707 Best 15707 15707;31997;38827 -1.56019354839 0.3551 -6.32817419355 4.76798064516 0.0792100503946 0.652366663015 13904 Best 13904 13904;48702;50672 0.0 0.0 ENST00000439541.6,ENST00000209875.8 AntiUTR5,AntiUTR5intron not annotated potentially spurious 4879 539276 chr2:74221436-74221468- NoOverlap chr2 74221436 74221468 - 15.041881583 11 0.929198138399 9.22470907731 5.81717250564 ENST00000346834.8,ENST00000358683.8,ENST00000377632.5,ENST00000377634.8,ENST00000394019.6,ENST00000423644.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;74221435;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A74221436-74221468-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A74221436-74221468&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.474967846513 0.420767820805 0.598711387744 74448563 74448595 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;74448562;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A74221436-74221468-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A74448563-74448595&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLPVGVTHSDSSFSDTELDR Same 540654 chr2:74221436-74221468- 4705 4705 174 0 168 74218630 74221468 200 200;4879;6382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:74218630-74221468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.454545454545 0.611111111111 17.8382181818 0.9998 9.57500909091 8.26320909091 0.735962013123 0.771811261001 1947 99 99;1339;1947 31.5219636364 0.5766 18.5402909091 12.9816727273 0.731777233765 0.71676555405 2702 1520 1520;1551;2702 0.0 0.0 ENST00000346834.8,ENST00000451608.2 CDS,NC coding exon(s) SLC4A5 exon skip leading to frameshift and alternative C terminus 4887 625620 chr12:9511699-9511773+ Extension chr12 9511699 9511773 + 3.25037592888 25 0.496604867628 -6.59132398605 9.84169991493 chr12:9511699-9511812+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9511698;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9511699-9511773%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9511699-9511773&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.015682053899 0.420562901982 1.04706447568 9664295 9664369 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9664294;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9511699-9511773%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9664295-9664369&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLDPDNSPIPNEVVQLHLKDKIVGNYTTDVNGIAQFFLDTYTFTYPNITLK Same 626295 chr12:9511699-9511773+ 4768 4768 119 0 666 9480562 9518314 1023 1023;1860;2492;4418;4887;28290;30014;57029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9480562-9518314&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.453333333333 0.274725274725 6.542848 0.6603 -7.355308 13.898156 0.607858083275 1.05214022454 2502 7 7;32;190;2502;3527;4447;12142;19347 11.283256 0.4256 -11.751428 23.034684 0.83671053999 1.07220384107 2361 4 4;8;122;2361;2406;2774;2953;4665 0.513229749821 chr12:31148815-31148973- 0.589097175331 chr12:31148815-31148973- ENST00000518709.5 NCintron pseudo-exon AC092821.1 pseudo exons 4902 534743 chr2:110348102-110348197+ NoOverlap chr2 110348102 110348197 + 3.42129375832 32 0.587708381018 -3.13069066871 6.55198442703 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110348101;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110348102-110348197%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110348102-110348197&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.105933817526 0.419984870765 1.03880288754 111105679 111105774 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111105678;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110348102-110348197%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111105679-111105774&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YAACRLCEAGTYRSRALDALPLQPCPPGFSCPQGESLGGLGR Same 536095 chr2:110348102-110348197+ 5453 5453 -551 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.697916666667 0.450281425891 4.25975 0.7562 -7.362196875 11.621946875 0.623296106841 1.08870629991 2421 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 12.63274375 0.6403 -8.763203125 21.395946875 0.980544209941 1.06708220456 1412 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 4911 488613 chr11:66718826-66718963- NoOverlap chr11 66718826 66718963 - 3.55635647314 46 0.714551799404 -0.378952090507 3.93530856364 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;66718825;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66718826-66718963-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A66718826-66718963&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.363267448869 0.419557869511 0.901129526911 66486297 66486434 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;66486296;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66718826-66718963-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A66486297-66486434&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WAGLEGAGSALLRRPAGPGPAPAGHTPPLSPPQHCPTCLSGAACLLSPQPGVPPLSVSGVR Same 490601 chr11:66718826-66718963- 5149 5149 -238 0 533 66718423 66728928 806 806;4911;26982;44139;59450;60343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:66718423-66728928&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.710144927536 0.579020979021 0.927632608696 0.8124 -0.770802173913 1.69843478261 0.0925306219494 0.58968157163 16712 593 593;16712;20471;28103;45869;62074 0.722463043478 0.345 -1.20225652174 1.92471956522 0.0926972679713 0.579201230491 12271 1083 1083;7192;12271;30758;47247;67889 0.0 0.0 ENST00000309996.6 CDSintron coding exon(s) SPTBN2 alternative first coding exon. 4927 474651 chr1:160722922-160723005- NoOverlap chr1 160722922 160723005 - 4.65368927749 28 0.376189931225 -5.51337861695 10.1670678944 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;160722921;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160722922-160723005-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A160722922-160723005&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0464560399107 0.418834536349 1.03037323342 160692712 160692795 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;160692711;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160722922-160723005-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A160692712-160692795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SITNEPLLALFLEAQEFFYACCHPLYITHNPSHCRLPRPLSEGNA*ADALVQPQMWFADSAAFLR Same 476530 chr1:160722922-160723005- 4923 4923 4 4 269 160722501 160723005 351 351;4927;5285 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:160722501-160723005&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.511904761905 0.620689655172 0.441235714286 0.0857 -2.22185 2.66308571429 0.0286812509516 0.598005854638 29211 27510 27510;28849;29211 9.21648571429 0.1833 -13.3373071429 22.5537928571 0.614405909469 1.07953912766 3124 2277 2277;3124;3495 0.0 0.0 not annotated putative regulatory region 4935 482343 chr10:117534530-117534580- NoOverlap chr10 117534530 117534580 - 5.06705300247 17 0.783326377015 -3.70178238434 8.76883538681 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117534529;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117534530-117534580-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117534530-117534580&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.192833991327 0.418461480204 1.05065092305 119294041 119294091 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119294040;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117534530-117534580-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119294041-119294091&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GESPQTTGLV*HSAAGRSK Same 484270 chr10:117534530-117534580- 4936 4936 -1 7 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.627450980392 0.6 2.23374705882 0.9666 -4.26025294118 6.494 0.183101460755 0.834976485898 9545 Best 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -4.31948235294 0.3612 -10.6033588235 6.28387647059 0.0127127572032 0.625607140548 29656 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000440007.5 NCintron not annotated putative regulatory region 4966 505843 chr14:105855766-105855798- NoOverlap chr14 105855766 105855798 - 17.0954181823 11 0.676995637307 4.83026370135 12.2651544809 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105855765;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105855766-105855798-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105855766-105855798&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.417630287281 0.41739309881 0.916509867998 106321871 106321903 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106321870;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105855766-105855798-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106321871-106321903&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HVSLTAVIAELPPKVSVFVPPRDGFFGNPR None NA NA 0 63 105837465 105856215 70 70;297;303;618;1534;1768;2725;3071;4703;4966;9883;19584;21248 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105837465-105856215&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.25714285714 35.5247545455 0.7953 11.6646181818 23.8601363636 0.345702621172 0.975959688287 4742 171 171;488;606;760;1848;2075;2155;2623;3063;3220;4742;9758;24097 40.4541 0.4047 7.90248181818 32.5516181818 0.52063203279 1.01583501359 3454 30 30;154;1395;1760;1980;1989;2291;2612;2659;3437;3454;6249;20954 0.0 0.0 ENST00000390559.6,ENST00000612473.1 NC,NCintron coding exon(s) IGHM alternative final coding exons 4982 582909 chr7:143639865-143639924- NoOverlap chr7 143639865 143639924 - 7.0448150754 20 0.495002670329 -1.25415499955 8.29897007495 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143639864;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143639865-143639924-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143639865-143639924&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.217069910383 0.416844505378 1.04520832543 143336958 143337017 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143336957;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143639865-143639924-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143336958-143337017&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TCHVTFANLTPHSVPSFPFQLQQAFGWEPFTQLFAEYQTLSHLPK Same 583838 chr7:143639865-143639924- 5340 5340 -358 0 72 143639739 143647639 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.194805194805 19.85518 0.9617 0.351905 19.503275 0.968923051784 0.991582571237 972 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 40.808085 0.8571 -12.844665 53.65275 1.01895416779 0.969876699748 798 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.936849465214 chr7:143727413-143727667+ 0.797398779819 chr7:143727413-143727667+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 4988 549663 chr22:25374157-25374300- NoOverlap chr22 25374157 25374300 - 6.22509165814 48 0.324351809466 2.38807503258 3.83701662556 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;25374156;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25374157-25374300-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A25374157-25374300&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.288452735991 0.416595881634 0.900852782772 25770124 25770267 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;25770123;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25374157-25374300-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A25770124-25770267&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WSFSGTFSHSVLVFPVHTRCEEDNGGCSHLCLLSLREAFYMCACPMGVQLQDNGRACEASEAVGR Same 551003 chr22:25374157-25374300- 5839 5839 -851 0 503 25374157 25381577 747 747;1980;4988;24697 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:25374157-25381577&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.618055555556 0.221538461538 14.8684020833 0.735 4.6544125 10.2139895833 1.09156469209 1.04701324017 22 15 15;22;147;4401 47.7791395833 0.8848 13.9519354167 33.8272041667 0.956907163734 1.00581583579 1743 656 656;1152;1264;1743 0.914704311595 chr11:68365571-68365702+ 0.837680505028 chr11:68365571-68365702+ ENST00000402859.6 UTR5intron pseudogene LRP5L converted to pseudogene (ENSG00000100068) after 3 exons added. This is still a protein-locus in GENCODEv28; it will be updated as a pseudogene in v29 5006 475493 chr1:204277638-204277667- NoOverlap chr1 204277638 204277667 - 7.35087008476 10 0.838681620508 -5.25163983405 12.6025099188 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204277637;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204277638-204277667-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204277638-204277667&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.117767363777 0.415411547636 1.01934270216 204246766 204246795 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204246765;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204277638-204277667-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204246766-204246795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ENCSINLSFSAAAAITADESGASFNPYAHR Same 477378 chr1:204277638-204277667- 4806 4806 200 0 568 204274737 204296665 865 865;5006;23025;23970 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204274737-204296665&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.625 2.73446 0.9222 -12.97156 15.70602 0.186601593748 1.03610310196 9385 1203 1203;9385;10452;47784 5.22058 0.3581 -13.18713 18.40771 0.179981730999 0.982284350478 6785 994 994;6785;21244;41089 0.0 0.0 ENST00000272203.7,ENST00000564627.1,ENST00000437919.1 UTR5intron,NCintron,AntiNC redundant PhyloCSF signals are accounted for elsewhere on the list 5013 561533 chr4:41857502-41857531- NoOverlap chr4 41857502 41857531 - 6.81640007496 10 0.888810559243 -5.04674005508 11.86314013 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41857501;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41857502-41857531-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41857502-41857531&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0734772936959 0.415192691727 1.03205740476 41859519 41859548 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41859518;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41857502-41857531-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41859519-41859548&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGLPRLRGNYTTSKPNF Same 562524 chr4:41857502-41857531- 4785 4785 228 0 3613 41857345 41882783 Best 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.75 3.07458 0.9786 -8.64284 11.71742 0.175421380158 1.01980464981 9981 Best 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -2.46595 0.8001 -17.09017 14.62422 0.0935287876613 0.88332329034 12173 Best 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 not annotated putative regulatory region 5015 500788 chr14:22928522-22928593+ NoOverlap chr14 22928522 22928593 + 2.40416253606 24 0.917678848452 -6.08791648845 8.49207902451 ENST00000216350.12,ENST00000324366.12,ENST00000397440.8,ENST00000397441.6,ENST00000421938.2,ENST00000553550.5,ENST00000553897.5,ENST00000554867.5,ENST00000554910.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22928521;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22928522-22928593%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22928522-22928593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.119342961692 0.415063983598 1.06252764516 23397731 23397802 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23397730;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22928522-22928593%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23397731-23397802&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCLGTGPILSRFLNELPLETRMEDR Same 502680 chr14:22928522-22928593+ 5673 5673 -658 0 1511 22928522 22929775 2247 2247;5015;34457 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22928522-22929775&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.909090909091 -2.204075 0.9931 -6.80762916667 4.60355416667 0.0352839086204 0.721419751809 26902 4477 4477;20365;26902 -23.3363875 0.8096 -32.8782458333 9.54185833333 -0.0276006570743 0.556510985811 54896 4571 4571;17788;54896 0.0 0.0 ENST00000216350.12,ENST00000553641.5,ENST00000556616.5,ENST00000553787.5 AntiCDS,AntiNC,AntiCDSintron,AntiNCintron not annotated potentially spurious 5029 503245 chr14:20435722-20435763- NoOverlap chr14 20435722 20435763 - 5.71625008753 14 0.743500201637 -5.01406439713 10.7303144847 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;20435721;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20435722-20435763-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A20435722-20435763&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132242987233 0.414327310991 1.04381543338 20903881 20903922 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;20903880;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A20435722-20435763-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A20903881-20903922&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QAVLPLLTCSYPANLGMSVSDTPHYPPELESVSHPVQRDCLGLLVHAQR Same 505116 chr14:20435722-20435763- 5063 5063 -34 0 178 20430676 20435763 215 215;783;1136;1201;3984;5029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:20430676-20435763&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.595238095238 0.28 1.14742857143 0.9293 -10.4120071429 11.5594357143 0.192500278432 1.04249274004 9110 70 70;912;1148;1271;2133;9110 -2.04898571429 0.3695 -17.6740428571 15.6250571429 0.145760249691 0.946166606401 8205 412 412;1247;1258;1543;1777;8205 0.0 0.0 coding exon(s) KLHL33 alternative first exon 5034 505957 chr15:21609377-21609490+ NoOverlap chr15 21609377 21609490 + 5.31923683145 38 0.431097886625 0.470686837247 4.8485499942 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;21609376;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21609377-21609490%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A21609377-21609490&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.224329103215 0.414132783726 0.952255757668 22332685 22332798 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;22332684;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21609377-21609490%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A22332685-22332798&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SISFSGCLAQIYFLHFLGASEMFLLTVMAYDRYVAICNPLR Same 507669 chr15:21609377-21609490+ 5614 5614 -580 0 509 21609137 21614980 756 756;2089;3812;4681;5034;9481;63060 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:21609137-21614980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.473684210526 0.0 14.3732868421 0.878 3.46903421053 10.9042526316 1.04166733825 1.0548759371 347 Best 347 347;392;1003;1013;1063;1118;2359 49.0579210526 0.9603 -5.16942105263 54.2273421053 0.984168295292 0.962438509976 1358 949 949;977;1339;1358;1773;2103;2551 0.988290189613 chr14:19747428-19748369+ 0.575413065151 chr14:19747428-19748369+ ENST00000625989.2 NC pseudogene (shared cluster) two olfactory receptor pseudogenes in close proximity (ENSG00000285491 & ENSG00000285116) 5035 505969 chr15:22044734-22044847+ NoOverlap chr15 22044734 22044847 + 5.31923683145 38 0.431097886625 0.470686837247 4.8485499942 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;22044733;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A22044734-22044847%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A22044734-22044847&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.224329103215 0.414132783726 0.952255757668 22332685 22332798 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;22332684;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A22044734-22044847%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A22332685-22332798&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SISFSGCLAQIYFLHFLGASEMFLLTVMAYDRYVAICNPLR Same 507680 chr15:22044734-22044847+ 5615 5615 -580 0 2707 22044494 22044847 3813 3813;5035;63061 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:22044494-22044847&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.464912280702 0.0 14.4044184211 0.889 3.42107105263 10.9833473684 1.04417452775 1.05488562749 320 Best 320 320;1022;2281 52.8435394737 0.9601 -5.89338684211 58.7369263158 0.988563814053 0.977341121086 1296 Best 1296 1296;1328;2349 0.976061627087 chr14:19747428-19748369+ 0.603122157714 chr14:19747428-19748369+ ENST00000558896.5,ENST00000557817.4 NC,NCintron pseudogene extension olfactory receptor, family 4, subfamily Q, member 3 (OR4Q3) pseudogene (ENSG00000285135) 5038 551738 chr3:28576312-28576392+ NoOverlap chr3 28576312 28576392 + 3.47972954092 27 0.763233104165 -3.0774073478 6.55713688872 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;28576311;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576312-28576392%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A28576312-28576392&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.182511944247 0.41404664048 1.02172965353 28617803 28617883 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;28617802;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576312-28576392%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A28617803-28617883&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EFLRARSPSPAPRGLAEPARRRHSRPSPSR Same 552675 chr3:28576312-28576392+ 5164 5164 -126 0 983 28576036 28576517 1505 1505;5038;5448;7957;10074;23556 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:28576036-28576517&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.83950617284 0.667582417582 -3.8349962963 0.7903 -7.08584074074 3.25084444444 -0.044059210135 0.605615277384 68747 2378 2378;7891;9594;33970;37362;68747 -8.51432222222 0.4638 -12.5240814815 4.00975925926 -0.0147116726177 0.572443659576 44104 2933 2933;5925;8065;10942;38452;44104 0.0 0.0 ENST00000432518.6 NC redundant PhyloCSF signals are accounted for elsewhere on the list 5039 569176 chr5:140592018-140592047- NoOverlap chr5 140592018 140592047 - 16.2751200199 10 0.929198138399 4.30769022703 11.9674297929 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140592017;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140592018-140592047-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140592018-140592047&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.430546614553 0.414000113206 0.918602171545 139971603 139971632 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139971602;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140592018-140592047-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139971603-139971632&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLQMLFEEALPLSCSDPVLSTLSLVQVRPLR Same 570189 chr5:140592018-140592047- 4595 4595 444 0 59 140590883 140594367 66 66;3111;5039;6920;27936 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140590883-140594367&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.0 21.26062 0.9792 2.44398 18.81664 0.825129310436 0.98528423501 1580 89 89;1580;2076;2463;3172 23.01087 0.3767 2.72559 20.28528 0.438977980957 0.953411376917 3790 1915 1915;3790;4044;4161;4734 0.0 0.0 ENST00000507279.5 NC pseudogene unitary pseudogene ENSG00000283602 5043 480270 chr10:23223792-23223824- NoOverlap chr10 23223792 23223824 - 12.892700071 11 0.911118971819 4.35929081657 8.53340925446 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;23223791;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23223792-23223824-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A23223792-23223824&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.441476720181 0.413867179601 0.897790653403 23512721 23512753 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;23512720;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23223792-23223824-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A23512721-23512753&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLFPPDNTVHIFCVFQKVKPLLVQSR Same 482180 chr10:23223792-23223824- 4610 4610 433 0 3631 23223792 23223824 Best 5043 5043 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:23223792-23223824&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.0 14.4587272727 0.9809 -0.0885090909091 14.5472363636 0.709690560045 1.02125119665 2047 Best 2047 2047 14.4587272727 0.3066 -0.0885090909091 14.5472363636 0.248856185509 0.853641476995 5222 Best 5222 5222 0.0 0.0 ENST00000376501.5 NC not annotated potentially spurious 5047 528146 chr19:35407926-35407973+ NoOverlap chr19 35407926 35407973 + 4.61970622651 16 0.70822652018 -5.73842498288 10.3581312094 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35407925;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35407926-35407973%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35407926-35407973&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0608509277893 0.413725501216 1.04576073678 35898828 35898875 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;35898827;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35407926-35407973%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A35898828-35898875&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RAKRLAAVTLFNFLVCLDPVLCLPWWVPPVEESNWWAGAVLFSALDAALTP Same 529594 chr19:35407926-35407973+ 5086 5086 -39 0 3634 35407926 35408066 Best 5047 5047;58930 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35407926-35408066&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.25 13.79555 0.9886 -6.79918125 20.59473125 0.863247914716 0.969102229957 1413 Best 1413 1413;1527 28.98860625 0.5418 -1.7378 30.72640625 0.909288359766 1.04882578814 2059 Best 2059 2059;2537 0.311985894381 chr19:35449715-35450707+ 0.573153656149 chr19:35449715-35450707+ ENST00000536898.5,ENST00000441942.6 NC,NCintron pseudogene free fatty acid receptor 2 (FFAR2) unprocessed pseudogene (ENSG00000283479) 5053 472438 chr1:53274751-53274783- NoOverlap chr1 53274751 53274783 - 9.57038179853 11 0.865995269703 -1.39664541591 10.9670272144 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;53274750;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A53274751-53274783-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A53274751-53274783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.332825178546 0.413510320909 1.03451930967 53740423 53740455 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;53740422;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A53274751-53274783-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A53740423-53740455&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EWQARGRRESV Same 474315 chr1:53274751-53274783- 4853 4853 200 0 308 53274696 53274821 415 415;5053;56664 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:53274696-53274821&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.55294117647 -5.28456363636 0.982 -12.4454 7.16083636364 -0.0317374484808 0.804887030967 61633 1812 1812;28108;61633 -31.4035909091 0.9943 -59.6184727273 28.2148818182 -0.0158027232148 0.602099479125 44915 815 815;20948;44915 0.0 0.308951021127 chr19:11107392-11107514+ ENST00000480045.5,ENST00000306052.10,ENST00000465675.5 NC,CDSintron,UTR5intron pseudo-exon LRP8 pseudo-exon. 5109 494079 chr12:2855381-2855413- NoOverlap chr12 2855381 2855413 - 11.9387727651 11 0.80120546273 -0.666781815616 12.6055545807 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2855380;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2855381-2855413-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2855381-2855413&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.400966462046 0.411133306458 1.01439362226 2964547 2964579 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2964546;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2855381-2855413-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2964547-2964579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MVQASESLPPSQTWAQREFFLPSESWEFPGFTR Same 496073 chr12:2855381-2855413- 5522 5522 -413 0 6 2849327 2855413 6 6;133;515;985;1632;2840;5109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2849327-2855413&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.606060606061 0.6875 16.2039545455 0.9811 4.5256 11.6783545455 0.721485601266 0.958723910222 2001 26 26;270;287;599;1474;2001;2776 19.1831727273 0.4333 0.155081818182 19.0280909091 0.515276105546 0.951600407699 3470 189 189;675;1206;2115;2904;3470;3931 0.0 0.0 ENST00000537710.5 AntiNCintron protein-coding gene protein-coding gene ENSG00000283297 5110 485916 chr11:111449336-111449365+ NoOverlap chr11 111449336 111449365 + 13.1290402651 10 0.89824368658 -0.0497498631477 13.1787901282 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111449335;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111449336-111449365%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111449336-111449365&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.385602785161 0.411094079649 1.00258163083 111320061 111320090 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111320060;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111449336-111449365%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111320061-111320090&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLGMVHHNEVLTNQHEPALLPPPPRPQPSDSRYPCLPGHR Same 487874 chr11:111449336-111449365+ 4762 4762 348 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.7 0.555555555556 19.20208 0.9383 -0.24892 19.451 0.685527412954 0.985121771626 2146 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 34.35219 0.6265 8.47982 25.87237 0.910436877348 0.988468764141 2054 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000531398.1,ENST00000525890.1 AntiUTR5intron,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 5125 574266 chr6:30056989-30057018- NoOverlap chr6 30056989 30057018 - 5.32005994171 10 0.865377279316 -6.76579018831 12.08585013 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;30056988;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30056989-30057018-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A30056989-30057018&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0941443405458 0.410646727353 1.02273010807 30024766 30024795 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;30024765;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30056989-30057018-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A30024766-30024795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLAMPPFLRSQIGK Same 575295 chr6:30056989-30057018- 4838 4838 287 0 80 30056989 30058171 93 93;601;1036;2276;5125 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:30056989-30058171&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4 0.0 5.01299 0.9512 -8.74224 13.75523 0.255291132202 1.04030624668 6815 903 903;1446;1727;2503;6815 5.27974 0.3405 -9.59869 14.87843 0.128465435502 0.88881233826 9246 2810 2810;3423;3544;3993;9246 0.0 0.0 ENST00000431012.5,ENST00000376797.7 NC,NCintron pseudogene unitary pseudogene ENSG00000204623 5129 589079 chr9:66182461-66182640+ NoOverlap chr9 66182461 66182640 + 3.94771333188 60 0.317444622466 -1.68083618556 5.62854951743 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;66182460;180;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66182461-66182640%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A66182461-66182640&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.150484253768 0.410429050795 1.04309471074 42338803 42338624 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;42338802;-178;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66182461-66182640%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A42338803-42338624&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATLGTQLGEFTWMTSLLTETPCPTGVWTVQNFSQVLENTSEGDKLQSPRFYNSEGCGFGLTLYPHGRESSGYLRLAFYMCSGENDAILEWPVENR Different 590026 chr9:66182461-66182724+ 2054 2054 3075 0 3697 66182325 66188394 Best 5129 5129;10383;13781;19517;25319;25601 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:66182325-66188394&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 0.255681818182 17.43709 0.8776 -2.70776166667 20.1448516667 0.989967871249 0.968916540114 833 27 27;119;165;833;1155;1409 42.7119816667 0.8352 -1.11173833333 43.82372 1.01120286003 0.963959775556 927 170 170;536;804;927;1082;1686 1.04566494494 chr6:46833074-46833538+ 1.0111072061 chr6:46833074-46833538+ pseudogene MEP1A pseudogene (ENSG00000284706); found after looking at high-scoring intergenic PCCRs 5133 588816 chr9:35301814-35301849+ NoOverlap chr9 35301814 35301849 + 8.0783750092 12 0.923903257801 -1.44988324338 9.52825825258 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35301813;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35301814-35301849%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35301814-35301849&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.304209730502 0.410354489833 1.03739859069 35301811 35301846 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35301810;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35301814-35301849%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35301811-35301846&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTGNDDFLEPLRKSFSQFLLTSPETCSK Same 589759 chr9:35301814-35301849+ 4883 4883 250 0 5 35300167 35307879 5 5;669;1004;1082;1090;2464;3976;4603;5133;9301;65975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35300167-35307879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.388888888889 0.0 10.4717083333 0.999 3.7984 6.67330833333 0.488483701255 0.766449926144 3218 565 565;1736;1846;2357;2445;2557;2989;3035;3218;3591;8325 21.8260166667 0.7064 3.31865833333 18.5073583333 0.835909719633 0.935632696238 2365 420 420;802;1067;1389;1934;2365;2375;2403;2753;3466;5635 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron coding exon(s) UNC13B cassette exon 5136 508192 chr15:30072759-30072791- NoOverlap chr15 30072759 30072791 - 12.0012363439 11 0.802089098816 -9.23931834914 21.2405546931 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;30072758;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A30072759-30072791-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A30072759-30072791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.402835761883 0.41029126906 0.985602152826 30364962 30364994 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;30364961;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A30072759-30072791-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A30364962-30364994&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLFSLKEYREILPQDCYPK Same 509911 chr15:30072759-30072791- 4348 4348 788 0 1070 30072627 30072923 1627 1627;3395;5136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:30072627-30072923&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.484848484848 0.55 9.94033636364 0.823 -6.18160909091 16.1219454545 0.354019124117 1.025260051 4615 4036 4036;4615;6171 24.1675 0.7114 -8.7309 32.8984 0.968066342983 1.04289055773 1601 Best 1601 1601;2299;4479 0.0 0.0 ENST00000421447.1 NC pseudogene tight junction protein 1 (zona occludens 1) (TJP1) pseudogene (ENSG00000229389) 5148 469677 chr1:248697030-248697161+ NoOverlap chr1 248697030 248697161 + 3.64762040024 44 0.641720940233 -0.604679693129 4.25230009337 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;248697029;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A248697030-248697161%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A248697030-248697161&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.288560585443 0.409865617002 0.925063505411 248860331 248860462 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;248860330;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A248697030-248697161%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A248860331-248860462&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PVFYLFLTVSWEIKMSDLEEEDVDEFSSSGFKCPTCFAVQGRKCDTELKWCAADK Same 471558 chr1:248697030-248697161+ 5631 5631 -483 0 3711 248692176 248697161 Best 5148 5148;29061 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:248692176-248697161&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.44696969697 0.169230769231 1.60688409091 0.4911 -2.72096590909 4.32785 0.104056631189 0.829434713445 15417 Best 15417 15417;19279 1.60688409091 0.1535 -2.72096590909 4.32785 0.0374243708056 0.680276012258 21660 10188 10188;21660 0.0 0.0 ENST00000437830.3 NC pseudogene unitary pseudogene ENSG00000229703 5154 544676 chr20:16368532-16368564- NoOverlap chr20 16368532 16368564 - 6.8043181754 11 0.890956255159 -4.20880899917 11.0131271746 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;16368531;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A16368532-16368564-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A16368532-16368564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.133894669791 0.409642571492 1.0431415975 16349177 16349209 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;16349176;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A16368532-16368564-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A16349177-16349209&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DTSSHLLQAGTK Same 546070 chr20:16368532-16368564- 4932 4932 222 0 469 16367827 16368564 678 678;707;5154 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:16367827-16368564&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575757575758 0.0 5.17579090909 0.9943 -7.43249090909 12.6082818182 0.338110818688 1.03672355462 4874 807 807;1882;4874 8.36191818182 0.6554 -16.3126545455 24.6745727273 0.57435691808 1.06268082705 3248 737 737;2696;3248 0.0 0.0 ENST00000354981.6 CDSintron coding exon(s) KIF16B alternate final exon 5160 579716 chr7:142797457-142797498+ NoOverlap chr7 142797457 142797498 + 10.6648784535 14 0.732813436659 5.99823583556 4.66664261797 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142797456;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142797457-142797498%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142797457-142797498&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.49568771189 0.409406937992 0.680159734931 142495141 142495182 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142495140;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142797457-142797498%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142495141-142495182&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FACGGAPPCSYEQYFGPGTRLTVTGEIR None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.861538461538 18.5406142857 0.9236 4.53130714286 14.0093071429 0.751044762155 1.00718641205 1862 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 18.2862857143 0.5099 2.99122142857 15.2950642857 0.635955937377 0.884508674773 3039 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.082662499285 chr17:75588058-75590243+ ENST00000390419.1,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 5165 503812 chr14:35688496-35688660- NoOverlap chr14 35688496 35688660 - 2.9586709093 55 0.962464193318 -0.794576375593 3.75324728489 ENST00000382366.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;35688495;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A35688496-35688660-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A35688496-35688660&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.379541720385 0.409244766158 0.90297305562 36157702 36157866 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;36157701;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A35688496-35688660-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A36157702-36157866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGIASSQLGSRSTLRSSSHEAGLQQGSLGGVYKTVVHALSKPKANVSPQRQNRMPPEAPLRDLYSHVMGYFGR Same 505655 chr14:35688496-35688660- 5103 5103 62 0 433 35688390 35689833 619 619;1406;1746;5165;32191 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:35688390-35689833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.509090909091 0.375 3.23198 0.9996 0.0167090909091 3.21527090909 0.491738974847 0.771796466076 3200 554 554;1849;2725;3200;13014 11.3538109091 0.8772 -2.09007090909 13.4438818182 0.838526081974 0.987446530765 2355 277 277;2355;2616;3577;13447 0.0 0.0 ENST00000382366.7,ENST00000307138.10,ENST00000554652.5 CDS,CDSintron,NCintron coding exon(s) RALGAPA1 intronic CDS 5176 548279 chr22:27023184-27023252+ NoOverlap chr22 27023184 27023252 + 5.91093482142 23 0.819927619161 2.10681307316 3.80412174826 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;27023183;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A27023184-27023252%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A27023184-27023252&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.552358247316 0.408913959188 0.745857361131 27419147 27419215 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;27419146;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A27023184-27023252%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A27419147-27419215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") REDIPMIPFCMPNRELRCRSVCPAPAPST Same 549647 chr22:27023184-27023252+ 5051 5051 125 0 3732 27023184 27023252 Best 5176 5176 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:27023184-27023252&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.550724637681 0.773109243697 0.525039130435 0.9301 0.10397826087 0.421060869565 0.00592920255506 0.363557469446 38627 Best 38627 38627 -5.54509565217 0.8753 -2.42719130435 -3.11790434783 -0.0415702415972 0.278774139622 66380 Best 66380 66380 0.0 0.0 ENST00000623027.1 NC not annotated potentially spurious 5179 491317 chr12:49033650-49033679+ NoOverlap chr12 49033650 49033679 + 9.3611000061 10 0.865362020294 -3.06424996257 12.4253499687 ENST00000301067.11 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;49033649;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49033650-49033679%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A49033650-49033679&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.258384451472 0.408744633847 1.02388906606 49427433 49427462 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49427432;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49033650-49033679%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49427433-49427462&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MLLLLLLGQSCIK Same 493294 chr12:49033650-49033679+ 4958 4958 221 0 27 49020566 49033910 27 27;1869;2293;3141;4665;5179;14171;29832;59889;70464 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:49020566-49033910&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.566666666667 0.0 6.17536 0.9732 -11.20026 17.37562 0.377321980436 1.00832591706 4299 391 391;2014;2802;4299;4455;6825;32787;42176;48473;48787 -4.24874 0.7803 -25.09474 20.846 0.152497500967 1.02639964799 7899 2210 2210;2935;3946;7899;19234;24986;25843;31483;36637;57651 0.0 0.23600498159 chr19:55377593-55377718+ ENST00000301067.11 AntiCDS not annotated potentially spurious 5205 479237 chr10:122768335-122768376+ NoOverlap chr10 122768335 122768376 + 10.2459858039 14 0.57336864707 -4.38184313263 14.6278289365 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122768334;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122768335-122768376%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122768335-122768376&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.349785711391 0.407924829915 0.985598283454 124527851 124527892 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124527850;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122768335-122768376%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124527851-124527892&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWARHNCGHLEDASVICAGEGLVVNLHLEGCF Same 481142 chr10:122768335-122768376+ 5336 5336 -131 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.0 24.2749785714 0.8979 -2.83404285714 27.1090214286 0.659021377176 0.983787341287 2262 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 57.6726714286 0.9672 -14.5741357143 72.2468071429 0.997835189349 0.980502926939 1144 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.0645766112068 chr10:122630961-122631281+ 0.223937746393 chr10:122613974-122614297+ ENST00000439464.6 NCintron pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 5230 500765 chr14:22542228-22542254+ NoOverlap chr14 22542228 22542254 + 11.1589332157 9 1.0 -1.07478920619 12.2337224219 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22542227;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22542228-22542254%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22542228-22542254&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.264438983403 0.40723484151 1.01507201342 23011171 23011197 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23011170;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22542228-22542254%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23011171-23011197&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIFGAGTRLAVHPCEYDPASDQCK None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.0 8.09822222222 0.9987 -5.84148888889 13.9397111111 0.423158176062 1.03260035956 3778 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 7.64482222222 0.3772 -7.36063333333 15.0054555556 0.156804408513 0.877022334346 7714 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390533.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 5235 503449 chr14:23102338-23102490- NoOverlap chr14 23102338 23102490 - 3.33602543497 51 0.839048435427 0.0281901780297 3.30783525694 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23102337;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23102338-23102490-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23102338-23102490&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.44093181876 0.406936562277 0.848856112347 23571547 23571699 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23571546;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23102338-23102490-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23571547-23571699&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNSLSHNVLPSNFTSPFLSFPLLVLPSSLSAVRENCSTRQLVTRQDEWGQLLLTTPAVSLSLAKHLGVSGASLGVPLEEEVR Same 505288 chr14:23102338-23102490- 5110 5110 125 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.542483660131 0.0904255319149 4.41626862745 0.944 -0.827415686275 5.24368431373 0.613758933984 0.929033764914 2468 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 9.70595686275 0.5922 -0.162841176471 9.86879803922 0.739005490378 0.894700083231 2676 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283654 5236 561021 chr4:6011932-6011970- NoOverlap chr4 6011932 6011970 - 12.5011613965 13 0.650293736172 -4.82126932878 17.3224307253 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;6011931;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6011932-6011970-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A6011932-6011970&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.454695844279 0.406904579753 0.982818763649 6013659 6013697 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;6013658;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6011932-6011970-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A6013659-6013697&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHPEQVPPCFSCCRIQELELSERKLLR Same 562011 chr4:6011932-6011970- 5243 5243 -7 0 128 6008014 6018431 155 155;465;689;1797;5236 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:6008014-6018431&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.487179487179 0.0 17.6610307692 0.8652 -4.56135384615 22.2223846154 0.60430771463 0.96680914269 2527 256 256;423;1173;1484;2527 17.5639769231 0.4407 -4.91183846154 22.4758153846 0.606119316585 1.02769383221 3145 2 2;2247;2302;2304;3145 0.0 0.0 coding exon(s) C4orf50 5' exons 5285 474647 chr1:160722501-160722575- NoOverlap chr1 160722501 160722575 - 3.10239584923 25 0.516073548486 -6.30778018475 9.41017603397 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;160722500;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160722501-160722575-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A160722501-160722575&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00898066444149 0.405467141286 1.0560617301 160692291 160692365 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;160692290;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160722501-160722575-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A160692291-160692365&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DAIAHLFESIMTLDLPQTIKTDNGPCVLVLNLHMHCNFGTYNTKPR Same 476526 chr1:160722501-160722575- 5233 5233 52 0 269 160722501 160723005 351 351;4927;5285 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:160722501-160723005&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.36 0.441176470588 0.63282 0.1161 -4.305632 4.938452 0.033350556288 0.777229458912 27510 Best 27510 27510;28849;29211 9.901564 0.1903 -9.34098 19.242544 0.509732612459 1.0527387966 3495 2277 2277;3124;3495 0.0 0.0 not annotated putative regulatory region 5306 503794 chr14:34969251-34969313- NoOverlap chr14 34969251 34969313 - 5.16034285724 21 0.826040610797 -0.872676135174 6.03301899242 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;34969250;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34969251-34969313-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A34969251-34969313&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.376030102247 0.404945697809 0.953284119178 35438457 35438519 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;35438456;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34969251-34969313-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A35438457-35438519&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CFSLHQMQQQPEPTVHLGAFLYDEDLLIHYMR Same 505637 chr14:34969251-34969313- 5186 5186 120 0 551 34954880 34969313 836 836;1153;1921;2166;5306;5436 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:34954880-34969313&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52380952381 0.236842105263 4.59144285714 0.9931 -1.59026190476 6.1817047619 0.397004084839 0.847596800404 4048 816 816;1162;1336;1486;1625;4048 8.2940952381 0.7129 -4.81335238095 13.107447619 0.541277348112 0.907084646195 3383 390 390;1335;1542;1847;2704;3383 0.0 0.0 ENST00000554945.1 NC pseudogene unitary pseudogene ENSG00000258704 5322 577677 chr7:27147819-27148034+ NoOverlap chr7 27147819 27148034 + 3.87464305945 72 0.791024940024 2.11136384101 1.76327921843 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27147818;216;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147819-27148034%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27147819-27148034&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.614050928602 0.404197200567 0.692960818653 27187438 27187653 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27187437;216;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147819-27148034%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27187438-27187653&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSNWFVSGWPNAKSDSSKSHQLTRRRPMGANAGARSPGTAATEAAKLQTAPSPPARRPPGRLMGAHS*PARLSSR Same 578716 chr7:27147819-27148034+ 5123 5123 199 5 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.689814814815 1.09803921569 -0.022875 0.9207 -2.71372777778 2.69085277778 0.234672862029 0.67243058252 7466 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -7.35736666667 0.7122 -7.44175833333 0.0843916666667 0.0301606093539 0.495082260034 23706 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NCintron,AntiNCintron not annotated putative regulatory region 5329 500649 chr14:21736694-21736726+ NoOverlap chr14 21736694 21736726 + 6.78761818192 11 0.693881825811 -8.52668191357 15.3143000955 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21736693;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21736694-21736726%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21736694-21736726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0753397150919 0.40398278485 0.960345787417 22204976 22205008 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22204975;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21736694-21736726%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22204976-22205008&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLGLCFTPIGTLSLAKTTQPISMDSYEGQEVNITCSHNNIATNDYITWYQQFPSQGPR None NA NA 0 231 21736694 21736969 291 291;5329;31683 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21736694-21736969&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575757575758 0.0 3.05274545455 0.7169 -6.32756363636 9.38030909091 0.0773936007216 0.94917008236 18625 1450 1450;14549;18625 -2.70736363636 0.4413 -17.9070181818 15.1996545455 0.0913606904669 0.908731454006 12418 882 882;4102;12418 0.0 0.0 ENST00000390426.2 NC immunoglobulin segment overlaps an immunoglobulin region 5350 516237 chr17:7432430-7432477+ NoOverlap chr17 7432430 7432477 + 10.0671811253 16 0.732402532998 7.29876249272 2.76841863256 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7432429;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7432430-7432477%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7432430-7432477&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.565488952632 0.403138212118 0.494394703797 7335749 7335796 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7335748;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7432430-7432477%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7335749-7335796&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQVVSNDLQTFSEVPVLIELQSSSWR Same 517611 chr17:7432430-7432477+ 5416 5416 -66 0 708 7420340 7438334 1096 1096;1905;1920;2283;5350;13988;14787;48569;72692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7420340-7438334&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.458333333333 0.0 12.99714375 0.9878 10.3252875 2.67185625 0.548776657423 0.464955313804 2819 1008 1008;1355;2074;2394;2819;5308;13112;27391;64992 9.31654375 0.3997 7.0092625 2.30728125 0.133645838175 0.447584389825 8899 3602 3602;3907;7062;7245;8899;17053;24490;30052;59755 0.0 0.0 ENST00000575310.1 NCintron protein-coding gene protein-coding gene ENSG00000283439 5369 572290 chr6:99531717-99531785+ NoOverlap chr6 99531717 99531785 + 5.05003469146 23 0.938994430457 -0.14661746958 5.19665216104 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;99531716;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99531717-99531785%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A99531717-99531785&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.429315833991 0.402452414532 0.898682665669 99979593 99979661 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;99979592;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99531717-99531785%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A99979593-99979661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLVFSYLAGVRSKKALDTAISLGFHR Same 573315 chr6:99531717-99531785+ 5769 5769 -400 0 705 99531419 99531785 1091 1091;2523;5369 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:99531419-99531785&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.463768115942 0.27380952381 5.52150869565 0.9396 -3.42319130435 8.9447 0.536342893661 1.01315987526 2895 1843 1843;2302;2895 22.9810521739 0.8461 -0.886839130435 23.8678913043 0.995792137938 1.05175993878 1178 Best 1178 1178;1315;1701 0.0 0.0 ENST00000452647.2 NC protein-coding gene protein coding gene ENSG00000228439 5370 579090 chr7:114086182-114086223+ NoOverlap chr7 114086182 114086223 + 5.33617847306 14 0.761190857666 -5.16474992888 10.5009284019 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;114086181;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114086182-114086223%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A114086182-114086223&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0956952095525 0.402328074721 1.04630397358 113726237 113726278 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;113726236;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114086182-114086223%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A113726237-113726278&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IANNTRARPGARACQR Same 580134 chr7:114086182-114086223+ 5348 5348 22 0 780 114085900 114086223 1206 1206;5370 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:114085900-114086223&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.761904761905 1.48235294118 3.88222857143 0.864 -3.22543571429 7.10766428571 0.140974690321 0.848190226707 12207 2912 2912;12207 2.36043571429 0.36 -5.6626 8.02303571429 0.0825851435038 0.680881477725 13467 3753 3753;13467 0.0 0.0 not annotated putative regulatory region 5411 493929 chr12:132120500-132120604+ NoOverlap chr12 132120500 132120604 + 7.29197997366 35 0.35620529924 3.30170852031 3.99027145335 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132120499;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132120500-132120604%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132120500-132120604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.277425383412 0.400648774431 0.856339668959 132605045 132605149 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132605044;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132120500-132120604%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132605045-132605149&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVVPEASAEAAGGPRPKSHWDYLLEEMQWMATDFAQERWKVASVKKVGWNSTLWK Same 495920 chr12:132120500-132120604+ 6325 6325 -914 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.110526315789 22.4288428571 0.8399 8.02708571429 14.4017571429 1.01605960788 1.04180758422 605 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 51.5136828571 0.9365 16.9098342857 34.6038485714 0.960114209208 1.0361342371 1696 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.928482577987 chr12:131987705-131987890+ 0.82476823118 chr12:131987705-131987890+ ENST00000332441.7 NC redundant PhyloCSF signals are accounted for elsewhere on the list 5416 549837 chr22:30968818-30968871- NoOverlap chr22 30968818 30968871 - 3.82761660218 18 0.836694556768 -5.03606657353 8.86368317571 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30968817;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30968818-30968871-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30968818-30968871&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0396295882665 0.400585484049 1.05438116228 31364804 31364857 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31364803;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30968818-30968871-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31364804-31364857&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGGGGSGGGGGGGSSTWFQER Same 551178 chr22:30968818-30968871- 5386 5386 30 0 396 30968818 30969787 554 554;2215;5416;5709;10618;10639;64375;71711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968818-30969787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.759259259259 0.969230769231 1.54560555556 0.8026 -5.37303333333 6.91863888889 0.118248475163 0.871920812038 14102 2943 2943;3632;14102;33814;35661;50818;50890;52885 1.22171111111 0.2855 -6.96427222222 8.18598333333 0.0875288240473 0.720324387676 12847 3899 3899;7559;12847;33921;34528;35006;48262;54755 0.0 0.0 under investigation; now made coding Identifies a putative CDS within exonic sequence of lncRNA TUG1. The STOP codon and reading frame are conserved in mammals, although no ATG initiation codon has been found. The 5' NPR terminus falls close to a [CTG] codon that is conserved in mammals, which would demarcate a single exon 153aa CDS [chr22:30969357-30969818]. This translation has now been experimentally confirmed by Lewandowski et al in a manuscript submitted to bioRxiv (https://www.biorxiv.org/content/10.1101/562066v1), and TUG1 will be annotated as a protein-coding gene in GENCODEv32. 5436 503789 chr14:34954880-34954954- NoOverlap chr14 34954880 34954954 - 3.30976808667 25 0.746999313344 -3.91877197742 7.2285400641 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;34954879;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34954880-34954954-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A34954880-34954954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.101887508842 0.399841790239 1.0420711235 35424086 35424160 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;35424085;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A34954880-34954954-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A35424086-35424160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLHADICTPDLLLQNADAMNNAFEY Same 505632 chr14:34954880-34954954- 5640 5640 -204 0 551 34954880 34969313 836 836;1153;1921;2166;5306;5436 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:34954880-34969313&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.36 0.0 7.632068 0.9849 -3.936412 11.56848 0.811673504387 1.06587713249 1625 816 816;1162;1336;1486;1625;4048 9.762056 0.5219 -6.70778 16.469836 0.731052817199 1.00813407589 2704 390 390;1335;1542;1847;2704;3383 0.0 0.0 ENST00000556355.5,ENST00000555015.5 NC,NCintron pseudogene unitary pseudogene ENSG00000258704 5448 551740 chr3:28576349-28576411+ NoOverlap chr3 28576349 28576411 + 7.18201428821 21 0.74505444201 3.97264287337 3.20937141484 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;28576348;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576349-28576411%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A28576349-28576411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.571151040653 0.399334835977 0.643977334519 28617840 28617902 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;28617839;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576349-28576411%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A28617840-28617902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSFSAPGAHPPLPGGWRSLPGAATAAPAPAAASAAGSG Same 552677 chr3:28576349-28576411+ 5431 5431 17 0 983 28576036 28576517 1505 1505;5038;5448;7957;10074;23556 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:28576036-28576517&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.793650793651 0.65625 6.57294285714 0.7987 3.50913333333 3.06380952381 0.222403271223 0.584206862467 7891 2378 2378;7891;9594;33970;37362;68747 6.89752857143 0.4131 1.96031428571 4.93721428571 0.212829088133 0.601851450757 5925 2933 2933;5925;8065;10942;38452;44104 0.0 0.0 ENST00000432518.6 NC redundant PhyloCSF signals are accounted for elsewhere on the list 5454 510358 chr16:1432591-1432644+ NoOverlap chr16 1432591 1432644 + 6.69748898016 18 0.579201953155 -1.74384441641 8.44133339657 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;1432590;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A1432591-1432644%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A1432591-1432644&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.236320646748 0.399084195829 1.04372191624 1482592 1482645 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;1482591;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A1432591-1432644%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A1482592-1482645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEMAAGVIRPLCDFQLPLLR Same 511999 chr16:1432591-1432644+ 5911 5911 -457 0 250 1432591 1433358 320 320;530;5454;34729 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:1432591-1433358&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 0.6 17.93485 0.8792 1.42006111111 16.5147888889 0.793315167059 1.020978999 1694 321 321;892;1694;3844 31.3436111111 0.7817 3.68536111111 27.65825 1.04394413021 1.04727316352 417 Best 417 417;1698;1787;3365 0.0 0.0046582239744 chr19:1486853-1487065- protein-coding gene protein-coding gene ENSG00000284395 5460 505808 chr14:105643630-105643935- NoOverlap chr14 105643630 105643935 - 3.26544511457 102 0.321578052141 -1.39554996993 4.6609950845 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105643629;306;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105643630-105643935-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105643630-105643935&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.178046454803 0.398986240725 0.968791653716 106109967 106110272 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106109966;306;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105643630-105643935-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106109967-106110272&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DRPQLGADTSTSISSSAPPVAGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVQFNWYVDGVEVHNAKTKPREEQFNSTFRVVSVLTVVHQDWLNGKEYKCKVSNKGLPAPIEKTISK None NA NA 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.591503267974 0.677157610032 10.460345098 0.5644 -2.22217254902 12.6825176471 1.11103273398 1.04015800296 11 Best 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 7.76618431373 0.3382 -8.35951470588 16.1256990196 0.673492162906 1.05478512377 2912 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.111659925109 chr17:42166297-42166546- ENST00000390545.2 NC immunoglobulin segment overlaps an immunoglobulin region 5461 585816 chr8:10474966-10475007- NoOverlap chr8 10474966 10475007 - 7.42470014947 14 0.901792935073 -0.377500040191 7.80220018966 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;10474965;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10474966-10475007-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A10474966-10475007&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.365936647623 0.398938868773 0.999238589593 10332476 10332517 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;10332475;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10474966-10475007-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A10332476-10332517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STWYQLGIISWGVGCGQK Same 586753 chr8:10474966-10475007- 5283 5283 178 0 1390 10474912 10483234 2083 2083;5461;58915 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:10474912-10483234&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.595238095238 0.0 8.49807142857 0.9633 -3.78129285714 12.2793642857 0.539976256693 1.03942133311 2872 1396 1396;2872;3519 25.85035 0.691 3.28026428571 22.5700857143 0.96357069051 1.00676456282 1656 900 900;1656;3663 0.02119376978 chr8:10538476-10538793+ 0.333899340978 chr11:117903571-117903807- ENST00000524047.5 AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 5467 483268 chr11:1108236-1108298+ NoOverlap chr11 1108236 1108298 + 5.71238089743 21 0.551506828412 -2.19894768794 7.91132858537 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1108235;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1108236-1108298%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1108236-1108298&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.186331917878 0.398780119958 1.0432166609 1102144 1102206 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1102143;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1108236-1108298%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1102144-1102206&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VDNNTLLNVIACTHVPCNTSCSPVSGHPPPSACPFPSSQTSTR Same 485198 chr11:1108236-1108298+ 5872 5872 -405 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.651724137931 9.95751428571 0.925 -10.3227190476 20.2802333333 0.837475735742 0.947061716312 1525 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 17.9758571429 0.7975 -21.2310714286 39.2069285714 0.981969161529 0.891460785684 1391 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.214123111751 chr11:1198874-1198996+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 5501 553775 chr3:151803868-151803906+ NoOverlap chr3 151803868 151803906 + 5.62229233522 13 0.685293237319 -6.79518449306 12.4174768283 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;151803867;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A151803868-151803906%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A151803868-151803906&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0549819352118 0.397721789189 1.00915006214 151521656 151521694 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;151521655;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A151803868-151803906%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A151521656-151521694&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TES*KRSLFYNHGGGSCLSSNGK Same 554724 chr3:151803868-151803906+ 5248 5248 253 2 3981 151803778 151803906 Best 5501 5501;23891 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:151803778-151803906&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.358974358974 0.0 14.4407153846 0.8244 -12.0676 26.5083153846 0.495325471624 0.98187248912 3175 Best 3175 3175;12818 17.7773307692 0.4327 -10.7427923077 28.5201230769 0.616998395985 1.05378763378 3109 Best 3109 3109;8549 0.605553309128 chr3:151817366-151817588+ 0.70733033414 chr3:151817366-151817588+ ENST00000485020.1,ENST00000475855.1 NC,AntiNCintron pseudogene arylacetamide deacetylase (esterase) (AADAC) unprocessed pseudogene (ENSG00000250271) 5508 577723 chr7:27184530-27184613+ NoOverlap chr7 27184530 27184613 + 6.67051435555 28 0.67936380778 4.3873250559 2.28318929965 ENST00000006015.3,ENST00000517402.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27184529;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184530-27184613%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27184530-27184613&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.620312692996 0.39753964062 0.595177453716 27224149 27224232 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27224148;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184530-27184613%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27224149-27224232&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGAAAALGAPPPLFLLCCRRRLPAAAAAAAVRT*SCRRARCSRRRR Same 578762 chr7:27184530-27184613+ 5586 5586 -78 12 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.809523809524 1.36585365854 -3.01976428571 0.7389 -4.56898214286 1.54921785714 -0.0500877887499 0.469051588643 70998 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -7.68870714286 0.5484 -5.83973928571 -1.84896785714 -0.0500001772091 0.342309013156 71341 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000520360.5,ENST00000006015.3 NC,AntiCDS not annotated putative regulatory region 5519 505118 chr14:93926359-93926385- NoOverlap chr14 93926359 93926385 - 9.11539991697 9 0.856733043412 -4.57007763121 13.6854775482 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;93926358;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A93926359-93926385-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A93926359-93926385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.177197222286 0.397269637098 1.00404080275 94392705 94392731 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;94392704;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A93926359-93926385-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A94392705-94392731&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TMGQVCTLGYCHRANAGGAASR Same 506965 chr14:93926359-93926385- 5264 5264 255 0 3263 93926359 93927414 4529 4529;5519;7892;32325;72262 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:93926359-93927414&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.703703703704 0.920454545455 3.95875555556 1.0 -8.58078888889 12.5395444444 0.216090045442 1.02728710325 8144 Best 8144 8144;12586;16200;29537;58582 0.198733333333 0.9363 -17.3783555556 17.5770888889 0.142204618594 0.960941458225 8416 Best 8416 8416;20263;26837;36661;44192 0.0 0.0 ENST00000554742.1,ENST00000554538.1,ENST00000267594.5,ENST00000557719.1 NC,NCintron,AntiCDSintron,AntiUTR5intron not annotated potentially spurious 5572 531714 chr19:48469331-48469462- NoOverlap chr19 48469331 48469462 - 4.43521589312 44 0.945671986517 3.05915683508 1.37605905804 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48469330;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469331-48469462-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48469331-48469462&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.66246450119 0.395110816202 0.578855093179 48972588 48972719 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48972587;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469331-48469462-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48972588-48972719&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGPASRAWIRVGPRARVSPLKRPGSHRRLLSASPQR*KDSSLRRPTAPSVGTAPLFDTVQSTVGAFVLPALATK Same 533189 chr19:48469331-48469462- 5667 5667 -95 12 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.712121212121 1.01149425287 -1.28560227273 0.9569 -2.94606136364 1.66045909091 0.0319079642651 0.549659879369 27987 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -5.20058863636 0.4132 -7.99998409091 2.79939545455 0.0222653755216 0.597891569795 26250 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.0 ENST00000600650.1,ENST00000427476.4,ENST00000391881.7,ENST00000595676.1 NC,AntiUTR5,AntiNC,AntiUTR5intron coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 5573 578139 chr7:57190149-57190199+ NoOverlap chr7 57190149 57190199 + 10.5828411158 17 0.399117669499 -0.170247169102 10.7530882849 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57190148;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57190149-57190199%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57190149-57190199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.246486569938 0.395087130784 1.04040297565 57257856 57257906 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57257855;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57190149-57190199%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57257856-57257906&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NHSFIPIVLELVPLKTFK Same 579178 chr7:57190149-57190199+ 5993 5993 -420 0 65 57190149 57192692 73 73;718;767;5573;6277;8782;10566 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57190149-57192692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.294117647059 0.0 25.7821588235 0.8008 -5.41372941176 31.1958882353 0.588830808934 0.994751062027 2604 832 832;1401;1806;1937;2083;2177;2604 54.8940588235 0.9242 5.70210588235 49.1919529412 0.98327892805 1.00838105528 1370 Best 1370 1370;1632;1670;1726;2011;2050;2238 0.832749997336 chrM:7586-8269+ 0.943105091441 chrM:7586-8269+ pseudogene MTCO3P4 mitochondrially encoded cytochrome c oxidase III pseudogene 4 (ENSG00000228851) 5577 581619 chr7:81586891-81586944- NoOverlap chr7 81586891 81586944 - 3.73522232638 18 0.770254232259 -5.43716099527 9.17238332166 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;81586890;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81586891-81586944-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A81586891-81586944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0154565157944 0.394976955742 1.05527273863 81216207 81216260 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;81216206;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A81586891-81586944-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A81216207-81216260&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATDTTGLFCQGTLIILIRNINDEKPQFE Same 582578 chr7:81586891-81586944- 5585 5585 -8 0 592 81560120 81607572 904 904;925;973;1260;1465;2153;3581;4237;4691;5577 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:81560120-81607572&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.0 2.23488888889 0.9728 -13.9276944444 16.1625833333 0.50232350814 1.03523662732 3130 1152 1152;1609;1628;2206;2439;2771;3071;3088;3130;3532 5.11002222222 0.4374 -15.1265611111 20.2365833333 0.499773287316 1.0591274718 3529 2526 2526;2821;2931;3052;3114;3116;3529;3585;4138;5392 0.0 0.0 ENST00000413944.2 NCintron pseudogene unitary pseudogene ENSG00000233491 5591 485930 chr11:111454984-111455016+ NoOverlap chr11 111454984 111455016 + 10.0601909052 11 0.741234732308 -5.01224548708 15.0724363923 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111454983;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111454984-111455016%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111454984-111455016&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.311704931313 0.394583113075 0.982191536025 111325709 111325741 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111325708;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111454984-111455016%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111325709-111325741&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLGEARSLQQLWGTR Same 487888 chr11:111454984-111455016+ 5770 5770 -179 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606060606061 0.333333333333 18.5071363636 0.9767 -2.07167272727 20.5788090909 0.796637477614 0.97855818119 1683 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 20.1612818182 0.4 -4.64279090909 24.8040727273 0.510063216839 1.03589339306 3493 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000528953.1,ENST00000525890.1 NC,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 5603 565644 chr5:139472772-139472807+ NoOverlap chr5 139472772 139472807 + 8.18064991633 12 0.829228656443 -1.76362491647 9.9442748328 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;139472771;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A139472772-139472807%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A139472772-139472807&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.301736321818 0.394143618968 1.04185754092 138852357 138852392 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;138852356;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A139472772-139472807%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A138852357-138852392&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHQGHATLPTEPPTPKPDGGIYLIHWR Same 566639 chr5:139472772-139472807+ 5514 5514 89 0 50 139472562 139472807 56 56;2777;5603 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:139472562-139472807&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.327272727273 11.9288166667 1.0 -1.58026666667 13.5090833333 0.693695332544 1.03190613142 2114 247 247;1790;2114 16.7042083333 0.4736 -6.9484 23.6526083333 0.612187636919 1.03847678726 3130 211 211;3130;3241 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283288 5614 582918 chr7:143647112-143647147- NoOverlap chr7 143647112 143647147 - 7.76730004946 12 0.661314564736 -11.7777498563 19.5450499058 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143647111;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143647112-143647147-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143647112-143647147&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.179947393208 0.393866865637 0.992517039068 143344205 143344240 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143344204;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143647112-143647147-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143344205-143344240&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLQEFVAEGGGLLIGGQAWWWASQNPGHCPLAGFPGNIILNCFGLSILPQTLK Same 583847 chr7:143647112-143647147- 3537 3537 2077 0 72 143639739 143647639 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.0 16.5668333333 0.9619 -16.1377666667 32.7046 0.507159710297 1.03391189568 3094 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 31.357675 0.9156 -31.105475 62.46315 0.851651641225 1.06285569488 2308 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.968919121 chr7:143719683-143720674+ 0.791781866877 chr7:143719683-143720674+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 5616 533868 chr2:66695564-66695638+ NoOverlap chr2 66695564 66695638 + 3.3752999711 25 0.934004730297 -3.60745991707 6.98275988817 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;66695563;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A66695564-66695638%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A66695564-66695638&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.140609110111 0.393779799892 1.03302171409 66922696 66922770 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;66922695;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A66695564-66695638%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A66922696-66922770&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTHGGYLSLVTICQWDKGHCYG*LTGNFNNNNYSYYWCHK Same 535252 chr2:66695564-66695638+ 6317 6317 -701 11 4061 66695564 66700411 Best 5616 5616;19561;59741;72084 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:66695564-66700411&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.44 0.0 -1.57978 1.0 -5.333524 3.753744 0.0422971599507 0.661372944857 24924 13483 13483;24924;65088;65347 -7.103656 0.8837 -9.528868 2.425212 -0.0134908003609 0.503640337352 43215 27624 27624;34537;43215;50700 0.0 0.0 ENST00000435389.5,ENST00000412944.1 NC,NCintron not annotated potentially spurious 5622 534715 chr2:110262676-110262771+ NoOverlap chr2 110262676 110262771 + 6.27179999789 32 0.411596856641 1.35165310185 4.92014689604 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110262675;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110262676-110262771%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110262676-110262771&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.225359990936 0.393572907565 0.927691767181 111020253 111020348 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111020252;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110262676-110262771%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111020253-111020348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTQVAAYFFICVDLALALFEESELLPLPFLVSKP Same 536067 chr2:110262676-110262771+ 6271 6271 -649 0 64 110261435 110272049 71 71;655;738;1590;1755;2806;2841;5622 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110261435-110272049&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.489583333333 0.527472527473 17.45275625 0.7334 7.89709375 9.5556625 0.940282961186 1.02866507764 1137 39 39;230;616;725;1137;1749;1796;2218 31.645346875 0.7004 8.263803125 23.38154375 1.0555872015 1.04885197757 260 Best 260 260;295;766;1197;1279;1318;1559;1820 0.0 0.0 ENST00000562613.2,ENST00000568189.5 NC,NCintron pseudogene ion transport protein domain-containing transcribed unprocessed pseudogene (ENSG00000261760) 5623 539826 chr2:110024215-110024283- NoOverlap chr2 110024215 110024283 - 7.68666961206 23 0.467795834287 2.40344780684 5.28322180523 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110024214;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110024215-110024283-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110024215-110024283&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.291192396969 0.3935166009 0.892856681976 110781792 110781860 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110781791;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110024215-110024283-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110781792-110781860&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPGPVSSGAVAEVPCRPGSYCGPQTGLPPLCPGGLCLPCQLLHLQWPGAAVSSFPLPPQGSEPQPQPWNCCQHPM Same 541186 chr2:110024215-110024283- 6160 6160 -537 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.710144927536 0.232323232323 17.4011434783 0.7772 4.28053913043 13.1206043478 0.812213088545 1.0462446808 1622 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 20.9308652174 0.5232 1.26754347826 19.6633217391 0.962516898585 1.01860393386 1669 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 5649 476793 chr10:14838293-14838331+ NoOverlap chr10 14838293 14838331 + 5.28665392215 13 0.961177526982 -4.62053082539 9.90718474755 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;14838292;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14838293-14838331%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A14838293-14838331&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0403639619696 0.392646722075 1.05033198554 14880292 14880330 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;14880291;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14838293-14838331%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A14880292-14880330&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGTFTLIGGDAGGCSGRPDAGGWREREAPRCLMGPLGGR Same 478687 chr10:14838293-14838331+ 6253 6253 -604 0 39 14838293 14843891 43 43;332;2288;5649;18768 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:14838293-14843891&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.717948717949 0.912280701754 1.52744615385 0.9845 -10.6740076923 12.2014538462 0.230713307749 1.04752507848 7592 141 141;644;2902;7592;7784 -3.91081538462 0.5052 -12.1015538462 8.19073846154 0.0245986925669 0.672783672364 25459 1661 1661;2005;4606;11944;25459 0.0 0.0 ENST00000378372.7,ENST00000493863.5,ENST00000378442.5 UTR5,NC,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000284024 5660 527136 chr19:10052770-10052808+ NoOverlap chr19 10052770 10052808 + 10.9188308166 13 0.610406652934 1.52097696524 9.39785385132 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;10052769;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A10052770-10052808%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A10052770-10052808&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.37217479128 0.392213399772 1.00687556976 10163446 10163484 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;10163445;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A10052770-10052808%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A10163446-10163484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTQLTHLTGDILGETIVGSLTPSEIQQLLR Same 528582 chr19:10052770-10052808+ 6202 6202 -542 0 68 10044071 10052967 77 77;2165;5660;9001 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:10044071-10052967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.538461538462 0.0 16.024 0.7896 2.64128461538 13.3827153846 0.478652396291 1.01319376415 3282 16 16;1747;2188;3282 13.3458153846 0.6389 -5.44825384615 18.7940692308 0.653733352221 0.983879846958 2985 327 327;682;1174;2985 0.0 0.36044149069 chr19:6694431-6694634- ENST00000495140.1 NCintron pseudogene C3P1 transcribed unprocessed pseudogene (ENSG00000167798) 5671 478485 chr10:100882236-100882271+ NoOverlap chr10 100882236 100882271 + 10.3928251863 12 0.94521502505 3.32773335775 7.06509182851 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100882235;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100882236-100882271%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100882236-100882271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.428246156336 0.392001327069 0.886723268987 102641993 102642028 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102641992;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100882236-100882271%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102641993-102642028&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FMGLPTADDMVDCALLVSK Same 480380 chr10:100882236-100882271+ 5242 5242 429 0 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.327272727273 6.831975 1.0 4.05471666667 2.77725833333 0.211408529419 0.461657434171 8336 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 1.89699166667 0.5085 -0.594158333333 2.49115 0.0173599248698 0.43432453064 27906 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 5684 588196 chr8:144063704-144063736- NoOverlap chr8 144063704 144063736 - 14.0257635875 11 0.722194247349 6.03347272223 7.99229086529 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144063703;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144063704-144063736-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144063704-144063736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.416098280243 0.391677836396 0.821612882596 145118607 145118639 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145118606;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144063704-144063736-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145118607-145118639&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSSLGFCSSGFLAEVAASPWLPRRRTIKFKNAER Same 589142 chr8:144063704-144063736- 5977 5977 -293 0 441 144060060 144063934 630 630;5684;20291;40487 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144060060-144063934&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.454545454545 1.32 26.0050454545 0.9373 -0.0105181818182 26.0155636364 0.661251328825 0.99733508738 2250 1144 1144;2250;2948;21092 20.5777090909 0.5095 -6.62071818182 27.1984272727 0.698007626808 1.04908921827 2819 685 685;2819;5734;26413 0.0261195669315 chr8:144012516-144012726+ 0.291670870722 chr11:1697246-1697635+ ENST00000567871.1 UTR5 coding exon(s) OPLAH alternative first exon 5688 520316 chr17:7915737-7915769- NoOverlap chr17 7915737 7915769 - 13.7686090578 11 0.761941225022 6.76355437799 7.00505467978 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7915736;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7915737-7915769-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7915737-7915769&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.426387466898 0.39139224652 0.75585797966 7819055 7819087 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7819054;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7915737-7915769-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7819055-7819087&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAGPRSAGWRALRR Same 521726 chr17:7915737-7915769- 5825 5825 -137 0 320 7909339 7916216 436 436;1938;4281;5688;13182;72031;73071;73673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7909339-7916216&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.787878787879 1.03125 23.4710818182 0.947 8.06864545455 15.4024363636 0.77887037766 0.953982710486 1761 349 349;1564;1761;1828;15031;19061;29084;43318 19.8342454545 0.5065 4.41868181818 15.4155636364 0.570031726863 0.854577679118 3263 2836 2836;3263;3677;4021;11908;12386;65199;71655 0.0 0.0 ENST00000324348.7 NC protein-coding gene protein-coding gene ENSG00000179859 5705 510484 chr16:3144605-3144640+ NoOverlap chr16 3144605 3144640 + 10.7474001944 12 0.817588565906 3.48035814365 7.26704205076 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3144604;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144605-3144640%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3144605-3144640&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.429273271167 0.390517229617 0.893119734285 3194606 3194641 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3194605;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144605-3144640%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3194606-3194641&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCPKVFLLLSSGPGCE Same 512125 chr16:3144605-3144640+ 5577 5577 128 0 256 3144015 3150751 334 334;814;1899;3328;3506;5705;11798;14824;15461;50287;55094 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3144015-3150751&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.0 13.4554333333 0.9945 2.8974 10.5580333333 0.688274947352 0.959467176085 2134 167 167;1186;1262;1661;1809;1880;2134;2541;2601;5815;43459 9.58143333333 0.6319 -10.9027416667 20.484175 0.558767238488 1.02162834922 3314 1889 1889;2882;2930;3314;3490;3499;6163;6623;16490;31726;59008 0.0582950512469 chr16:3147339-3147480+ 0.159003022388 chr17:49224246-49225124- ENST00000428155.1,ENST00000571356.5,ENST00000575497.5 UTR5,NC,NCintron pseudogene extension CASP16P pseudogene extended (ENSG00000228146) 5709 549846 chr22:30969384-30969494- NoOverlap chr22 30969384 30969494 - 4.09897027306 37 0.942422761512 1.23640815808 2.86256211498 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30969383;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969384-30969494-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30969384-30969494&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.53118581155 0.390479386422 0.739417318187 31365370 31365480 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31365369;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969384-30969494-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31365370-31365480&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APTATGRAPRRPGLRPKSWMPEQEKEPPTDRSIDRTPVPSPYQTR Same 551187 chr22:30969384-30969494- 5901 5901 -192 0 396 30968818 30969787 554 554;2215;5416;5709;10618;10639;64375;71711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968818-30969787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.720720720721 1.1980952381 0.135786486486 0.8247 -0.768278378378 0.904064864865 0.0126964708593 0.476686993164 35661 2943 2943;3632;14102;33814;35661;50818;50890;52885 -1.84072162162 0.3345 -2.09647567568 0.255754054054 0.000708744613389 0.479051690766 35006 3899 3899;7559;12847;33921;34528;35006;48262;54755 0.0 0.0 under investigation; now made coding Identifies a putative CDS within exonic sequence of lncRNA TUG1. The STOP codon and reading frame are conserved in mammals, although no ATG initiation codon has been found. The 5' NPR terminus falls close to a [CTG] codon that is conserved in mammals, which would demarcate a single exon 153aa CDS [chr22:30969357-30969818]. This translation has now been experimentally confirmed by Lewandowski et al in a manuscript submitted to bioRxiv (https://www.biorxiv.org/content/10.1101/562066v1), and TUG1 will be annotated as a protein-coding gene in GENCODEv32. 5747 730824 chr9:114097703-114097741- Extension chr9 114097703 114097741 - 11.9548771932 13 0.808392462043 9.24709230203 2.70778489113 chr9:114097604-114097741- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;114097702;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114097703-114097741-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A114097703-114097741&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.516947371771 0.38905786313 0.40392669437 116859983 116860021 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;116859982;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114097703-114097741-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A116859983-116860021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEGVPVPPSLAGIMQR Same 731420 chr9:114097703-114097741- 5849 5849 -102 0 201 114097703 114099171 245 245;413;642;1048;5747 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:114097703-114099171&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.74358974359 0.0 21.3234923077 0.989 15.7105615385 5.61293076923 0.742382143536 0.568802288573 1913 144 144;336;489;1116;1913 24.0197923077 0.5206 14.5843692308 9.43542307692 0.581705120688 0.651504092658 3221 115 115;195;206;3221;3941 0.0 0.121846085184 chr6:33404852-33405631+ ENST00000374118.7,ENST00000468460.1 Extension5p,NC coding exon(s) KIF12 coding exons added to make inferred transcript model 5751 578758 chr7:99610515-99610562+ NoOverlap chr7 99610515 99610562 + 5.63071259856 16 0.718751430533 -3.47927499935 9.10998759791 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;99610514;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A99610515-99610562%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A99610515-99610562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.188118492889 0.388896386122 1.05141132876 99208138 99208185 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;99208137;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A99610515-99610562%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A99208138-99208185&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PDPNVGCSLGTICLIQEMVCPCWHLLSTSQSMEEDHGSLYLDNLESLGGEPSSVQKETQVTAETVI Same 579801 chr7:99610515-99610562+ 6021 6021 -270 0 714 99604416 99610562 1102 1102;1689;5751;11556 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:99604416-99610562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.333333333333 2.7799625 0.66 -6.3363375 9.1163 0.143433039011 0.978448989721 12026 1260 1260;2328;2849;12026 1.51346875 0.2434 -7.38050625 8.893975 0.068232428513 0.732990080862 15447 3934 3934;4228;4926;15447 0.0 0.0 ENST00000431679.5 NC protein-coding gene protein coding gene ENSG00000244219 5767 534540 chr2:104430605-104430634+ NoOverlap chr2 104430605 104430634 + 5.80056001842 10 0.911836423285 -5.63829988837 11.4388599068 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;104430604;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A104430605-104430634%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A104430605-104430634&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0414135574295 0.388459363507 1.03682271606 105047063 105047092 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;105047062;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A104430605-104430634%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A105047063-105047092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HHRSSAERGDCS Same 535892 chr2:104430605-104430634+ 5621 5621 146 0 4171 104430374 104434436 Best 5767 5767;7541;18142;33869;59911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:104430374-104434436&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.714285714286 1.13739 0.9783 -11.72515 12.86254 0.130937333141 1.04074603103 13016 9209 9209;10532;13016;14084;50022 -2.02489 0.7027 -17.11346 15.08857 0.120048570007 0.898508379867 9820 Best 9820 9820;22956;28260;33042;50064 0.0 0.0 not annotated potentially spurious 5778 496461 chr12:95377268-95377297- NoOverlap chr12 95377268 95377297 - 11.0714999914 10 0.79814602884 -4.6054302454 15.6769302368 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;95377267;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95377268-95377297-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A95377268-95377297&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.31282144936 0.387927753921 0.980547862868 95771044 95771073 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;95771043;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95377268-95377297-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A95771044-95771073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WHSQSLKLSLAPVK Same 498463 chr12:95377268-95377297- 5871 5871 -93 0 4178 95377268 95382508 Best 5778 5778;49338 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:95377268-95382508&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.433333333333 0.0 13.89045 0.8781 -9.55651 23.44696 0.445020911461 0.958186640193 3550 Best 3550 3550;22351 13.10621 0.4263 -14.55451 27.66072 0.438306039853 1.05699725368 3793 Best 3793 3793;7274 0.0 0.0 ENST00000549961.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 5786 554600 chr3:195711593-195711628+ NoOverlap chr3 195711593 195711628 + 6.36375831564 12 0.87321024389 -3.85056684415 10.2143251598 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;195711592;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195711593-195711628%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A195711593-195711628&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.145549985616 0.38758242693 1.04862891594 195438464 195438499 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;195438463;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195711593-195711628%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A195438464-195438499&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLQTSLPGMPFNMAVRRIK Same 555551 chr3:195711593-195711628+ 5595 5595 191 0 4182 195708133 195711628 Best 5786 5786;39223 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:195708133-195711628&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 0.0 1.78515833333 0.849 -4.97993333333 6.76509166667 0.0369094326965 0.805666472696 26454 12164 12164;26454 2.8106 0.4139 -4.94161666667 7.75221666667 0.0739326212421 0.651588925901 14584 10014 10014;14584 0.0 0.0 ENST00000417704.5,ENST00000432194.7 NC,NCintron pseudogene unitary pseudogene ENSG00000283426 5807 538849 chr2:62091046-62091123- NoOverlap chr2 62091046 62091123 - 3.6558270592 26 0.39691591692 -7.45159616945 11.1074232286 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62091045;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62091046-62091123-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62091046-62091123&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0153085602206 0.387014868116 1.00525385892 62318181 62318258 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62318180;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62091046-62091123-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62318181-62318258&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WEQTCTLTQHGLMSIVLQMESEVAMKQWPTILSSEAQSK Same 540227 chr2:62091046-62091123- 5237 5237 570 0 4201 62090379 62098552 Best 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.461538461538 0.0 -0.703907692308 0.0463 -0.80845 0.104542307692 0.0260348911755 0.348991673016 30231 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 -0.703907692308 0.0145 -0.80845 0.104542307692 -0.0323934087459 0.429220306875 59237 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 5824 534688 chr2:109963466-109963531+ NoOverlap chr2 109963466 109963531 + 8.12949083068 22 0.430197604334 2.36637266793 5.76311816275 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;109963465;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109963466-109963531%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A109963466-109963531&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.252032909962 0.386434471423 0.922824385664 110721043 110721108 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110721042;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109963466-109963531%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110721043-110721108&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSSPPLTWSPLLCLNGEQDLLLAAAYVLDAQYNRNVPFETHLRPSGN Same 536040 chr2:109963466-109963531+ 6464 6464 -640 0 674 109963466 109974092 1038 1038;1288;1607;3960;4614;5824;6691;9138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:109963466-109974092&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.469696969697 0.0 16.9594818182 0.5378 7.48369090909 9.47579090909 0.542085996654 0.977552194089 2859 1343 1343;1741;2554;2750;2805;2859;2974;4366 44.5781272727 0.6878 13.1788454545 31.3992818182 0.997098897837 1.04104217342 1151 119 119;225;546;552;1151;1223;1320;1375 0.0 0.0 ENST00000425917.1,ENST00000303002.11 NC,NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000186148) 5833 591150 chr9:137217946-137217984+ NoOverlap chr9 137217946 137217984 + 6.72117702778 13 0.735295878303 -4.07443069495 10.7956077227 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;137217945;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A137217946-137217984%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A137217946-137217984&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.186011377798 0.386054368693 1.04485577563 140112398 140112436 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;140112397;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A137217946-137217984%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A140112398-140112436&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDDLGHPQGAETTASEPLLGAK Same 592105 chr9:137217946-137217984+ 6063 6063 -230 0 393 137217946 137221875 549 549;5833;50675 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:137217946-137221875&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641025641026 0.0 -3.54590769231 0.8758 -14.2712692308 10.7253615385 0.0460849179024 1.00494114989 24037 985 985;20938;24037 -10.7824692308 0.523 -21.9213846154 11.1389153846 -0.00112979518188 0.738849140665 35939 404 404;15581;35939 0.0 0.203212668155 chr1:19814418-19815101- protein-coding gene protein-coding gene ENSG00000284976 5870 475582 chr1:205457238-205457273- NoOverlap chr1 205457238 205457273 - 12.5567418933 12 0.611993591211 1.77670834462 10.7800335487 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;205457237;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205457238-205457273-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A205457238-205457273&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.381901203964 0.384558405114 1.00123978132 205426366 205426401 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;205426365;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205457238-205457273-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A205426366-205426401&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRRRRPQPQPNEK Same 477468 chr1:205457238-205457273- 6413 6413 -543 0 426 205429956 205457273 602 602;5870;20670;25343;28258;42315;54500 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:205429956-205457273&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.722222222222 1.125 7.862725 0.8054 1.54811666667 6.31460833333 0.16559000058 0.75652716175 10557 1075 1075;10557;16883;23930;42062;54053;60191 7.78931666667 0.3716 0.471183333333 7.31813333333 0.122036115508 0.62320814387 9691 283 283;9691;10748;23486;28634;42041;49407 0.0 0.169822302352 chr13:38687345-38692517+ ENST00000442318.1 AntiNCintron under investigation; now made coding Finds a 33aa single exon CDS within a 5' exon of LEMD1 in GENCODE [chr1:205441026-205440925], although this exon is part of lncRNA BLACAT1 in RefSeq. Transcriptomics data make it clear that the locus should indeed be considered an independent gene from LEMD1, with an indication of potential brain / neuronal specificity (e.g. SRR486241). The CDS was initially considered hard to appraise because of its small size, although the reading frame is conserved across vertebrates with only 3mer indels in the genomic alignments. Following the analytical work presented here, it was decided to convert this gene (i.e. BLACAT1) to protein-coding, and ENSG00000281406 appeared in GENCODEv31. 5892 540151 chr2:131379592-131379681- NoOverlap chr2 131379592 131379681 - 3.50349995295 30 0.320090536863 -10.4034133618 13.9069133148 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131379591;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131379592-131379681-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131379592-131379681&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00347481442311 0.383934898145 0.900690738788 132137165 132137254 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;132137164;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131379592-131379681-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A132137165-132137254&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INDFDSLVMIEHVYQMPPVYINIIFTYTISLLGLLIYQSHLISAVLLLLSLTVLAASIAIYK Same 541513 chr2:131379592-131379681- 5313 5313 579 0 643 131370351 131386316 988 988;1634;5892;16115;21323;24702;26053;30266;32713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131370351-131386316&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.311111111111 0.0 20.92071 0.6531 -15.2548566667 36.1755666667 0.720471751178 1.14621394893 2007 1235 1235;1643;1841;2007;2369;2922;4039;4272;46168 41.50306 0.7933 -23.3929066667 64.8959666667 0.911163723142 1.07359654263 2052 939 939;1359;1734;1945;2052;2301;2444;3194;23136 0.882416173853 chrM:10470-10766+ 0.901712022594 chrM:10470-10766+ pseudogene extension mitochondrial pseudogene region extended (e.g. ENSG00000284003) 5897 561215 chr4:17874085-17874129- NoOverlap chr4 17874085 17874129 - 4.78033340772 15 0.925993743801 -4.36023996671 9.14057337443 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17874084;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17874085-17874129-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17874085-17874129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0729787553482 0.383769926695 1.05077728698 17875708 17875752 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17875707;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17874085-17874129-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17875708-17875752&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHNHGTVDWNSKRRNLRFFCQNQFLNK Same 562206 chr4:17874085-17874129- 6257 6257 -360 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.355555555556 0.0 8.18562666667 1.0 -9.28694 17.4725666667 0.690035237445 1.00062097767 2125 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 6.29284666667 0.8026 -19.6850466667 25.9778933333 0.604856734979 1.07664064801 3149 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0764338489726 chr10:96981391-96985134+ ENST00000326877.8,ENST00000510121.5 CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 5900 543865 chr20:50662116-50662166+ NoOverlap chr20 50662116 50662166 + 5.67759404463 17 0.699441250522 -2.76924120328 8.44683524791 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;50662115;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A50662116-50662166%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A50662116-50662166&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.215184343731 0.383574962912 1.04407501224 49278653 49278703 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;49278652;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A50662116-50662166%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A49278653-49278703&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTPPPATSRPTGGVGVTQTTWEHLLLSLSR Same 545256 chr20:50662116-50662166+ 6236 6236 -336 0 4270 50662116 50662166 Best 5900 5900 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:50662116-50662166&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.364285714286 -0.540123529412 0.8812 -9.81827647059 9.27815294118 0.126038638269 0.987794085399 13439 Best 13439 13439 -0.540123529412 0.2754 -9.81827647059 9.27815294118 0.0713436831347 0.755249878587 14968 Best 14968 14968 0.0 0.0 ENST00000435177.1,ENST00000327979.6 NC,AntiUTR5intron not annotated potentially spurious 5908 491096 chr12:40432393-40432431+ NoOverlap chr12 40432393 40432431 + 5.96958450171 13 0.937102311742 -3.46973836422 9.43932286593 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40432392;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40432393-40432431%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40432393-40432431&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.144463984966 0.383429634359 1.04804271925 40826195 40826233 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40826194;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40432393-40432431%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40826195-40826233&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVPVDKYVFNSDGTVTNDK Same 493073 chr12:40432393-40432431+ 6106 6106 -198 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.358974358974 0.795918367347 11.4705076923 0.9717 -3.30946923077 14.7799769231 0.667112773856 1.03671564727 2215 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 11.1192307692 0.5559 -6.4209 17.5401307692 0.532364871566 0.965105950891 3412 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 5929 512397 chr16:73871387-73871452+ NoOverlap chr16 73871387 73871452 + 3.2882636838 22 0.980193789578 -4.75904101811 8.04730470191 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;73871386;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73871387-73871452%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A73871387-73871452&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0132583233069 0.382790663524 1.05379048697 73905286 73905351 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;73905285;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73871387-73871452%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A73905286-73905351&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EERQFYFFY*PNVITMAYFMEY Same 514041 chr16:73871387-73871452+ 7871 7871 -1942 10 802 73871387 73890893 1245 1245;5929;26802;45887 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:73871387-73890893&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.348484848485 0.5 -0.344286363636 1.0 -3.36177272727 3.01748636364 0.0542448655157 0.584977276513 22286 10495 10495;22286;51299;68737 -4.21725454545 0.7966 -3.82339090909 -0.393863636364 -0.0195235241585 0.381447754047 47708 6191 6191;30661;47708;50590 0.0 0.0 not annotated putative regulatory region 5938 483219 chr11:1074896-1074976+ NoOverlap chr11 1074896 1074976 + 4.44595559224 27 0.507769385316 -2.61697775208 7.06293334432 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1074895;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1074896-1074976%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1074896-1074976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.114410716254 0.382555401335 1.0397246857 1074896 1074976 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1074895;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1074896-1074976%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1074896-1074976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQPTPPLPATMGLPLARLAAVCLALSLAGGSELQTGER Same 485149 chr11:1074896-1074976+ 6327 6327 -389 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 0.299261083744 -2.04812592593 0.8951 -9.4246037037 7.37647777778 0.120718324064 0.93911797197 13875 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 -7.73188888889 0.5499 -13.9904703704 6.25858148148 0.0359053896131 0.67087811975 22050 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.0756209352647 chr19:39927059-39928306- ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 5971 479936 chr10:8054618-8054710- NoOverlap chr10 8054618 8054710 - 5.08517743311 31 0.751431025529 2.21162906001 2.8735483731 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8054617;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8054618-8054710-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8054618-8054710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.54892784838 0.381494077583 0.700291774791 8096581 8096673 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8096580;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8054618-8054710-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8096581-8096673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRQAAQCSQTAVARRNLRRF*CHPRRGGGAWR Same 481844 chr10:8054618-8054710- 6086 6086 -115 10 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.904864864865 -0.363087096774 0.9053 -2.25323548387 1.8901483871 0.0259390873463 0.53769108868 30265 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -4.0527516129 0.805 -5.76238387097 1.70963225806 0.0299178196433 0.513768876579 23775 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 ENST00000379328.7,ENST00000481743.1 AntiUTR5,AntiNCintron not annotated putative regulatory region 5982 540156 chr2:131419666-131419782- NoOverlap chr2 131419666 131419782 - 5.78383332797 39 0.318699931334 0.331138424384 5.45269490358 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131419665;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131419666-131419782-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131419666-131419782&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.156455043101 0.381296979263 0.997262384959 132177239 132177355 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;132177238;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131419666-131419782-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A132177239-132177355&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QIAFQQWEGRLQEQQRTIRDKKKTAGCTRRSNPLKPKGKPPAPTQ Same 541518 chr2:131419666-131419782- 6793 6793 -811 0 4323 131419666 131419782 Best 5982 5982 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131419666-131419782&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.445714285714 14.3957897436 0.6989 0.479976923077 13.9158128205 1.0620815302 1.01905879253 129 Best 129 129 17.1524307692 0.2831 1.51685641026 15.635574359 0.892166144542 1.00033856607 2146 Best 2146 2146 0.980418751197 chr7:37907479-37907664- 0.978751813139 chr7:37907479-37907664- pseudogene SFRP4 pseudogene (ENSG00000284659); found after looking at high-scoring intergenic PCCRs 6028 585774 chr8:8719469-8719546- NoOverlap chr8 8719469 8719546 - 5.60952314047 26 0.522102693217 -0.158080752079 5.76760389255 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;8719468;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A8719469-8719546-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A8719469-8719546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.226769615351 0.379740488194 0.962532411282 8576979 8577056 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;8576978;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A8719469-8719546-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A8576979-8577056&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSLSSHVDECSLACGPSNRLCHDTPGCYSCGCIQGHQLYDGNNCPVTSK Same 586711 chr8:8719469-8719546- 6489 6489 -461 0 139 8702390 8719546 167 167;2129;3075;3753;6028;26012 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:8702390-8719546&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.512820512821 0.393939393939 13.3147461538 0.763 3.04483076923 10.2699153846 0.796953188463 1.0376175886 1680 1679 1679;1680;2137;2318;4483;35378 13.3147461538 0.2385 3.04483076923 10.2699153846 0.429969323143 0.826802297156 3823 2793 2793;3236;3426;3823;4475;30167 0.0 0.0 pseudogene unitary pseudogene ENSG00000284717 6043 585588 chr8:143772040-143772258+ NoOverlap chr8 143772040 143772258 + 3.56051914639 73 0.469138001131 0.527586296405 3.03293284998 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143772039;219;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143772040-143772258%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143772040-143772258&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.286635528397 0.379320640402 0.843944538156 144854210 144854428 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144854209;219;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143772040-143772258%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144854210-144854428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RAAQVEQLLTREGVGHDEAGEARRLQRRVALAECEDSYGNTPLSEAAAGGQPLAIQLRAELGASPNSKVGAVGR Same 586525 chr8:143772040-143772258+ 5539 5539 504 0 77 143771490 143772485 87 87;100;935;6043 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143771490-143772485&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.762557077626 0.963908450704 4.64894794521 0.6569 -1.16166164384 5.81060958904 0.591918605691 0.971081389232 2588 3 3;85;342;2588 5.73886164384 0.6163 -4.80150958904 10.5403712329 0.682298164154 0.92589301787 2873 320 320;384;705;2873 0.0 0.0881911881958 chr8:143922504-143925884- redundant PhyloCSF signals are accounted for elsewhere on the list 6070 546236 chr21:8210559-8211248+ NoOverlap chr21 8210559 8211248 + 1.37856610702 230 0.548714560092 1.22699130929 0.151574797734 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8210558;690;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8210559-8211248%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8210559-8211248&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.542090387281 0.378547560368 0.633234090429 110006 110695 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;110005;690;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8210559-8211248%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A110006-110695&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTAGGIRIAPLEVKFLDRRKTDQSESICQECFH*SRTKVGGSKTIRYRRSSDHKRCRPAMRRRYSHDPPGSFRETKVFGFRGEYGCKAET*RN*RKGTTRSGACGLI*LNTGNLTRPGHGQD*QIDSSFSIPWVVVHGRS*LVERFVWLIPITNETLAC*LVTRPPSGRRPPTS*RDKWRSATRD*AITGL*CP*MSGAARALH*LAQRVPTLRRQARVTR*TPFVMGIGDCNYSP Same 547650 chr21:8210559-8211248+ 2089 2089 3981 173 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.56231884058 1.09004739336 -3.38930478261 0.2564 -2.87983826087 -0.509466521739 -0.0653438260062 0.627805177958 72851 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -3.8062 0.1736 -2.86230521739 -0.943894782609 0.0159964524908 0.437101634478 28377 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1,ENST00000631211.1 NCintron,AntiNC not annotated SSU-rRNA_Hsa repeat sequence 6099 547163 chr21:8392920-8394464- NoOverlap chr21 8392920 8394464 - 0.916108340893 515 0.175393449435 0.928866016908 -0.0127576760152 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8392919;1545;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392920-8394464-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8392920-8394464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.545070144973 0.377389262979 0.683258494556 153304 154848 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153303;1545;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392920-8394464-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153304-154848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLPLDSQVRPSSQRSARAVGRPRRGRSEGLTKPSNR**RRAVCTKGRDLINASL*PALTGNSSFMGNNCNPRSPSRMGFNGLPAPAGVG*AHAEPVSVARVQPRTSKGITDLLLLNLGWLNATCPSKKLGDADRSGVA*LVSMPESRSLSELTRQIAPPTKNGHAPPPTESRKSYQSVNPVRVRAG*GFPC*VKLSRRLHSWWCPSVNSFKFQLCNHTPPGTQRLWFPGSCPAGHGNNAAASPVGIVYGRNYDGI*SSSNLRLSFLINENILGKCFRSGPSCAGPRISPLAAQYECPRPSLLIMASVPKTNKIEPRSYSIIPSCGIQAARACFEHSNFFKVNASGPAGHSAKSIEGAPRGKGRGRAVARLAADRPPAPKIQLRAF*LQQL*YTLLELELPRLLAPDLPSNGSSLKDLKWTHSNYRASKESCIVIFRHYLPGSGVGNLRACCLPWMW*PFLRLPLRNRTLIPRHPWSPW*ARRLPSKVDRADVRMGRRRHGGRAIGPRLSRVTKAAGARPPAGAGEGLTGLVLI Different 548571 chr21:8392920-8394653- 43210 43210 -37111 385 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575404530744 1.059412428 -1.12895048544 0.2503 -1.14156679612 0.0126163106796 0.275877039887 0.502905235583 6197 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -1.58390427184 0.1177 -1.94587165049 0.361967378641 0.649587334337 0.698464924347 2998 Best 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0244053491193 chr2:235670100-235671057+ ENST00000625598.1,ENST00000623860.2 NC,AntiNCintron not annotated SSU-rRNA_Hsa 6101 572514 chr6:109255380-109255409+ NoOverlap chr6 109255380 109255409 + 10.6809701443 10 0.827405203326 -2.12795997858 12.8089301229 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;109255379;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109255380-109255409%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A109255380-109255409&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.307530460171 0.377326336943 1.01645585494 109576583 109576612 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;109576582;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A109255380-109255409%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A109576583-109576612&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QREYVQRLWR Same 573541 chr6:109255380-109255409+ 6204 6204 -103 0 198 109254451 109270128 241 241;379;398;784;1262;1279;1591;1821;4627;6101 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:109254451-109270128&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.833333333333 8.62933 1.0 -8.6648 17.29413 0.524508237718 1.0103428179 2971 103 103;138;267;470;609;712;856;2049;2971;3012 20.39408 0.7275 -27.38729 47.78137 0.863080094578 0.909428879278 2261 235 235;262;499;654;818;864;1043;1677;1862;2261 0.0 0.0 ENST00000453496.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 6103 482366 chr10:117543674-117543715- NoOverlap chr10 117543674 117543715 - 10.2719355226 14 0.750877938724 6.47310711656 3.79882840599 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117543673;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117543674-117543715-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117543674-117543715&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.490235945806 0.377209730771 0.585767354101 119303185 119303226 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119303184;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117543674-117543715-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119303185-119303226&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MRRERRAAVPRRGTYLGSDDPDIGSGG Same 484293 chr10:117543674-117543715- 6118 6118 -15 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.761904761905 1.5 3.39784285714 0.877 -0.658878571429 4.05672142857 0.0667394950077 0.609499443175 20183 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -1.142 0.6511 -9.36181428571 8.21981428571 0.0860708800806 0.688308978509 13015 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000551288.5,ENST00000442245.5 NCintron,AntiCDSintron not annotated putative regulatory region 6119 500670 chr14:21861800-21861826+ NoOverlap chr14 21861800 21861826 + 15.1554000576 9 0.940505073625 0.209188686477 14.9462113712 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21861799;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21861800-21861826%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21861800-21861826&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.361998048937 0.376672474653 0.993838113544 22329977 22330003 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22329976;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21861800-21861826%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22329977-22330003&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSSTLRCSFSTSVNNVQWFQQNPGLASSICFSWLHG Same 502657 chr14:21861800-21861826+ 5245 5245 874 0 130 21846938 21869364 157 157;319;1640;6119;15880;30074 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21846938-21869364&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.407407407407 0.0 8.31667777778 0.8826 -15.1818222222 23.4985 0.295502669314 0.950226391574 5725 19 19;1154;2028;2765;4576;5725 13.7381444444 0.3846 -21.9691 35.7072444444 0.332049253567 0.995709746299 4344 746 746;1536;2871;3379;4344;4897 0.0 0.0 immunoglobulin segment overlaps an immunoglobulin region 6120 497834 chr13:24613945-24613986+ NoOverlap chr13 24613945 24613986 + 8.54604279143 14 0.637201495384 -0.732157062207 9.27819985364 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;24613944;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A24613945-24613986%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A24613945-24613986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.305436077287 0.37655815366 1.03731102309 25188083 25188124 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;25188082;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A24613945-24613986%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A25188083-25188124&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGAGGDESPPAQRIEDLEWELSLAEGSSSVGGSRPSR Same 499847 chr13:24613945-24613986+ 6747 6747 -627 0 1241 24611978 24613986 1873 1873;6120 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:24611978-24613986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.224598930481 6.24349285714 0.611 -1.56640714286 7.8099 0.143773447239 0.887450281835 11996 Best 11996 11996;12569 6.3456 0.2303 -0.613628571429 6.95922857143 0.0680375955912 0.630845870233 15475 5853 5853;15475 0.0 0.0 pseudogene pseudogene ENSG00000285228 6140 505822 chr14:105741674-105741796- NoOverlap chr14 105741674 105741796 - 3.81436108089 41 0.392401007095 -2.31585610076 6.13021718165 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105741673;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105741674-105741796-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105741674-105741796&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0762109993237 0.375762611302 1.04248085049 106208011 106208133 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106208010;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105741674-105741796-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106208011-106208133&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTAVPTSVPTGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK None NA NA 0 546 105737771 105743011 829 829;1682;2080;6140;6600;28138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105737771-105743011&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.634146341463 0.408637873754 10.310004878 0.7138 -8.04930487805 18.3593097561 1.07851836775 0.910212635983 57 5 5;31;57;114;876;1915 12.4829780488 0.5118 -15.9286414634 28.4116195122 1.0892632478 0.993758724963 82 Best 82 82;224;483;1691;2370;2712 0.0 0.0969095643728 chr7:2632156-2632278+ ENST00000390542.6 NC immunoglobulin segment overlaps an immunoglobulin region 6176 509719 chr15:82711806-82711838- NoOverlap chr15 82711806 82711838 - 6.22278198329 11 0.821454184787 -5.11930920048 11.3420911838 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;82711805;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A82711806-82711838-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A82711806-82711838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0663810805942 0.374592140472 1.03835965333 83380558 83380590 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;83380557;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A82711806-82711838-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A83380558-83380590&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FFLSEAFLGQHFEAV Same 511450 chr15:82711806-82711838- 5975 5975 201 0 422 82699633 82711838 594 594;666;2562;3438;6176 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:82699633-82711838&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.545454545455 0.407407407407 13.4746818182 0.985 -6.95007272727 20.4247545455 0.702990888398 0.975465982535 2079 242 242;908;1397;1646;2079 16.7919636364 0.4563 -3.97553636364 20.7675 0.530439271732 0.995446952427 3420 862 862;988;2701;2921;3420 0.0 0.0 ENST00000440089.1 NC pseudogene unitary pseudogene ENSG00000228141 6190 693004 chr3:88139275-88139310+ Extension chr3 88139275 88139310 + 11.820799907 12 0.781795986877 7.16319998105 4.65759992599 chr3:88139275-88139505+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88139274;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88139275-88139310%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88139275-88139310&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.449418109342 0.373944826445 0.612791717108 88188425 88188460 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88188424;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88139275-88139310%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88188425-88188460&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLTALSTSKVDHNVPRHRCMLCNK Same 693634 chr3:88139275-88139310+ 6171 6171 19 0 293 88126134 88139310 388 388;882;969;1723;6190;10019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88126134-88139310&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.571428571429 17.9343166667 0.9678 13.5372583333 4.39705833333 0.585051036032 0.503256926169 2625 384 384;810;1269;2625;2709;3294 27.0587583333 0.8435 14.4466666667 12.6120916667 0.849089430469 0.739113451612 2319 476 476;635;1080;1140;2139;2319 0.0 0.0926454678163 chr6:87254650-87261801+ ENST00000309495.5,ENST00000462901.5 Extension5p,AntiUTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 6195 478897 chr10:113119086-113119169+ NoOverlap chr10 113119086 113119169 + 4.8256142629 28 0.85551232166 1.61431793656 3.21129632635 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113119085;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119086-113119169%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113119086-113119169&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.529099453731 0.373855247235 0.720749739689 114878845 114878928 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114878844;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119086-113119169%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114878845-114878928&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSAEVNKIDFVDRIYNESRDRIMGPLRIRVLSLESK Same 480798 chr10:113119086-113119169+ 6144 6144 51 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.440476190476 1.27272727273 -0.08595 0.9482 -0.928421428571 0.842471428571 0.015322828899 0.427787077797 34516 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -2.80782857143 0.9139 -4.37550357143 1.567675 0.0383316311015 0.497472136283 21425 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 6200 592885 chr9:112997453-112997611- NoOverlap chr9 112997453 112997611 - 1.99954715512 53 0.423479604014 -4.22577361285 6.22532076796 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;112997452;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A112997453-112997611-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A112997453-112997611&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0146308258115 0.37365220492 1.06584287938 115759733 115759891 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;115759732;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A112997453-112997611-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A115759733-115759891&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFSHTPAFIQHQRIHTGEKPYECNACGKAFNRSAHLTEHQRTHTGEKPYVCKECGK Same 593837 chr9:112997453-112997611- 6074 6074 126 0 4480 112997453 112997611 Best 6200 6200 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:112997453-112997611&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.427672955975 0.138622493461 -0.113362264151 0.3893 -6.12201509434 6.00865283019 0.108383111278 0.946307596065 15026 Best 15026 15026 23.4681113208 0.8058 -17.9732660377 41.4413773585 1.00919695518 0.833043138753 953 Best 953 953 0.0 0.470818764467 chr19:37412597-37414180- ENST00000427548.1 NC pseudogene ZNF883, coding according to RefSeq though pseudogene seems more likely given its odd structure (ENSG00000228623) 6244 509840 chr15:89333459-89333491- NoOverlap chr15 89333459 89333491 - 13.5787633955 11 0.758693827726 8.17333649912 5.40542689643 ENST00000268124.9,ENST00000442287.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;89333458;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89333459-89333491-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A89333459-89333491&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.422222729936 0.372202356194 0.613838358117 89876690 89876722 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;89876689;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89333459-89333491-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A89876690-89876722&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ANLRARRGDAWRGR Same 511575 chr15:89333459-89333491- 6352 6352 -108 0 569 89330211 89335145 867 867;1516;6244;11372;42877;43590;44649;44946 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:89330211-89335145&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.757575757576 0.727941176471 16.3791181818 0.9043 14.1260363636 2.25308181818 0.337915206583 0.329701894898 4879 991 991;1902;3329;4879;5570;8149;31414;32743 -12.3212454545 0.903 -17.1371 4.81585454545 -0.0514725687929 0.473978986066 71871 1954 1954;9286;12402;21990;33671;37713;45376;71871 0.0 0.0485150625054 chr1:153775114-153776164+ ENST00000268124.9,ENST00000631044.2 CDS,NC under investigation POLG contains a series of NPRs in the first and second coding exon that are out of frame to the annotated CDS (the POLG CDS is conserved in vertebrates). These NPRs in combination find a prospective alternative CDS with a STOP codon conserved in therian mamamls - found precisely at the terminus of the most 3' NPR - although no ATG initiation codon has been identified. However, a potential non-ATG initiation codon [CTG] at chr15:89333809 corresponds well with the beginning of the NPR series, creating a predicted 261aa CDS that is conserved in therian mammals. We have identified additional support for the translation of this alternative CDS within the mass spectrometry datasets provided by Pandey et al, specifically peptides [AAAAQPJGHPDAJER] and [AAAAAAAAAAAAAAATAASAAASAJJGGR] in CD8 cells. However, at the present time there is no evidence to suggest how this alternative CDS may be transcribed and translated, and it is unclear how to construct a transcript model. 6245 560796 chr4:575541-576239- NoOverlap chr4 575541 576239 - 4.10999442045 233 0.212941091334 2.90509097534 1.20490344511 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;575540;699;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575541-576239-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A575541-576239&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.232855811397 0.37217432635 0.709192952136 569330 570028 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;569329;699;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575541-576239-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A569330-570028&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVAAAAAAAAAAGGGGCGLRRRRRGPGRTREDEEEAGGPAARRREEAQAAGAAAGGGGRAGCGPARARRMKWSVRGACAALSSCLLLACALSAAAVGLKCFSLGSELRGEPFRLGAAAGAFYSGLLLAAGLSLLGAALLCCGPRDAPLAGSEPGPGLGVPAAPAGAPEATPGESGAAAGAPGPVSSQNLLLLGVLVFMLGVLSAFAGAVIDGDTVSLVERKYSHYCLPPRAPGSSPGSAPGSTPGSAPGSAPGSAPGSAPGAPR Same 561784 chr4:575541-576239- 3508 3508 2737 0 477 574887 576356 703 703;6245;31841;46311;49193;54444;54931;56343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:574887-576356&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.796852646638 1.02447470817 5.30956137339 0.3075 2.97765665236 2.33190472103 0.310166428823 0.768106457515 5393 1278 1278;5393;22990;30652;31516;37018;38104;57044 0.581975107296 0.5163 -7.42857081545 8.01054592275 0.574042165776 0.713470950641 3252 1826 1826;3252;19289;35804;46734;55036;61815;71601 0.0 0.0552240505577 chr19:7869033-7869544- protein-coding gene protein-coding gene ENSG00000273238 6277 578142 chr7:57192014-57192091+ NoOverlap chr7 57192014 57192091 + 4.25722693079 26 0.367595119461 -6.94800393856 11.2052308694 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57192013;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57192014-57192091%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57192014-57192091&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0204095742161 0.370922292593 1.00117858032 57259721 57259798 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57259720;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57192014-57192091%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57259721-57259798&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PALAVNTLLALSLIVIMFWLPQLNIYIKKIQPLR Same 579181 chr7:57192014-57192091+ 5898 5898 379 0 65 57190149 57192692 73 73;718;767;5573;6277;8782;10566 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57190149-57192692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.294871794872 0.696428571429 18.62955 0.7941 -21.846 40.47555 0.67600599223 1.14177524164 2177 832 832;1401;1806;1937;2083;2177;2604 37.438 0.9158 -32.4621769231 69.9001769231 0.870083413062 1.17994382737 2238 1370 1370;1632;1670;1726;2011;2050;2238 0.83460660097 chrM:10059-10404+ 0.976065164588 chrM:10059-10404+ pseudogene MTCO3P4 mitochondrially encoded cytochrome c oxidase III pseudogene 4 (ENSG00000228851) 6293 530416 chr19:18263249-18263290- NoOverlap chr19 18263249 18263290 - 5.89976426108 14 0.63089188983 -6.0011926932 11.9009569543 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;18263248;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18263249-18263290-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A18263249-18263290&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0907712422848 0.370331706251 1.02067856907 18374059 18374100 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;18374058;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18263249-18263290-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A18374059-18374100&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFSQGFVTYSQENNSESSLQSSSSLSLSTMSVASLPAVNK Same 531879 chr19:18263249-18263290- 6210 6210 83 0 692 18236900 18263956 1071 1071;2349;2964;6293;18798;31506 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:18236900-18263956&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.466666666667 3.25716428571 0.8051 -8.00452142857 11.2616857143 0.20749526025 1.03430431006 8481 1074 1074;2068;2444;2621;2710;8481 1.0558 0.304 -8.96800714286 10.0238071429 0.0765330816269 0.760653785963 14268 2208 2208;2924;3816;3839;4374;14268 0.0 0.0 ENST00000392413.4 CDSintron protein-coding gene protein-coding gene ENSG00000284797; found after looking at high-scoring intergenic PCCRs 6301 572467 chr6:108170962-108171000+ NoOverlap chr6 108170962 108171000 + 6.34696916433 13 0.847044738278 -3.02715371893 9.37412288326 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108170961;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108170962-108171000%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108170962-108171000&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.195997404834 0.370131499028 1.04648788917 108492166 108492204 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108492165;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108170962-108171000%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108492166-108492204&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HRPAELRENSIAFQLPSLVPAVFVFLLFPFTFQVCLLAR Same 573494 chr6:108170962-108171000+ 6146 6146 155 0 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.564102564103 0.65 3.20332307692 0.9728 -3.28089230769 6.48421538462 0.145706971032 0.795223955665 11848 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 0.319246153846 0.3283 -6.80344615385 7.12269230769 0.0289470694069 0.636021870606 24072 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000368983.3,ENST00000426403.1 CDSintron,UTR5intron not annotated putative regulatory region 6306 499781 chr13:51111878-51111907- NoOverlap chr13 51111878 51111907 - 12.0382802486 10 0.799290455482 -2.85666999817 14.8949502468 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51111877;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51111878-51111907-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51111878-51111907&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.341993009192 0.37004755545 0.994363255438 51686014 51686043 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;51686013;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51111878-51111907-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A51686014-51686043&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWSGYLNPPPASTMGCYPVTAVRSITAGR Same 501788 chr13:51111878-51111907- 6678 6678 -372 0 148 51110832 51111907 177 177;694;1207;6306 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51110832-51111907&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.779220779221 7.06009 0.9509 -7.67235 14.73244 0.347746216916 1.03647833938 4715 453 453;1104;1293;4715 3.63876 0.4565 -10.61213 14.25089 0.159342763805 0.872593144207 7599 1636 1636;1803;1976;7599 0.0 0.167708250184 chr22:18083437-18083732+ ENST00000433280.6 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 6311 484445 chr11:57037567-57037593+ NoOverlap chr11 57037567 57037593 + 14.3603775766 9 0.922804608225 0.217688871755 14.1426887049 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57037566;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57037567-57037593%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57037567-57037593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.348539348415 0.369915923368 0.992736738946 56805042 56805068 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;56805041;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57037567-57037593%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A56805042-56805068&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SMLAMEQNNGTEVTEFILLGFAGQHK Same 486390 chr11:57037567-57037593+ 5599 5599 712 0 338 57037567 57038422 463 463;582;884;1044;1236;1826;3363;6311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57037567-57038422&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.0 11.7490222222 0.9743 -12.7155222222 24.4645444444 0.508016062464 0.957687948828 3085 346 346;643;688;1159;1835;1855;2138;3085 19.2252666667 0.9149 -22.7858666667 42.0111333333 0.822813030337 0.951103338889 2401 792 792;938;1237;1246;1582;1841;2263;2401 0.116287060415 chr11:56988914-56989843+ 0.262556975603 chr11:56988914-56989843+ pseudogene OR5AK4P olfactory receptor family 5 subfamily AK member 4 pseudogene (ENSG00000283307) 6332 539519 chr2:89625698-89625844- NoOverlap chr2 89625698 89625844 - 6.39716535107 49 0.347678993776 3.84128567059 2.55587968048 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89625697;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89625698-89625844-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89625698-89625844&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.346314671287 0.369341113093 0.765102206662 91887960 91888106 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91887959;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89625698-89625844-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91887960-91888106&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HCGATSAGLRCEWQNNYTQCAPCASLSSCPVCY*NYREEDLILQ*RQCDRYCAIFSSF Different 540874 chr2:89625698-89625871- 3799 3799 2533 19 1126 89622214 89637657 1710 1710;1943;6332;11544;19922;20755;36821;56146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89622214-89637657&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.401360544218 0.170138888889 21.2023183673 0.7565 10.4667571429 10.7355612245 1.08191682287 1.04154703651 45 23 23;45;328;857;1530;2184;2340;8004 46.1972979592 0.8988 16.3104938776 29.8868040816 0.951020373752 1.02321821019 1812 334 334;1274;1390;1454;1567;1631;1812;2090 0.934366948197 chr7:152224015-152224179- 0.86557288736 chr7:152224015-152224179- pseudogene lysine (K)-specific methyltransferase 2C (KMT2C) pseudogene (ENSG00000283132) 6348 539831 chr2:110025458-110025508- NoOverlap chr2 110025458 110025508 - 6.52360002083 17 0.558049358448 -2.81027648729 9.33387650812 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110025457;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025458-110025508-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110025458-110025508&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.175311679677 0.368841570172 1.05275867551 110783035 110783085 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110783034;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025458-110025508-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110783035-110783085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEGSPCSAGTPATQACPSGHYCPGGSETHSGAPQACPEHTYLATDGGHSQAECLPCPAGYHCPWPGK Same 541191 chr2:110025458-110025508- 6701 6701 -353 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.647058823529 0.0 9.80684117647 0.7976 -2.29461176471 12.1014529412 0.515531381128 1.04538549977 3040 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 20.2766294118 0.6372 0.481252941176 19.7953764706 0.897817833146 0.998885250238 2114 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 6356 531035 chr19:37830658-37830711- NoOverlap chr19 37830658 37830711 - 6.36116113265 18 0.850995651179 1.18402772148 5.17713341117 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37830657;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830658-37830711-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37830658-37830711&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.441168969115 0.36862628273 0.84692203116 38321298 38321351 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38321297;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830658-37830711-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38321298-38321351&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLGGLMFCGHESGIVRTLSHYSCAR Same 532502 chr19:37830658-37830711- 6166 6166 190 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.0 10.6111555556 0.9221 1.40136666667 9.20978888889 0.624427121024 0.974755294466 2413 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 19.6381333333 0.473 -2.59042222222 22.2285555556 0.822007302987 1.03706198791 2404 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.172658678086 chr19:37892578-37895456- 0.48420721483 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 6375 518072 chr17:48598040-48598228+ NoOverlap chr17 48598040 48598228 + 3.0197983791 63 0.90933089189 0.298069769664 2.72172860943 ENST00000225648.3,ENST00000484302.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48598039;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48598040-48598228%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48598040-48598228&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.433229136013 0.367746394633 0.799513740795 46675402 46675590 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46675401;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48598040-48598228%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46675402-46675590&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVMSQRVRIARRIER*LAQEGLLPAGQSDGEGGVHEIGTHWEGRRARPLLLRRVYDLLCFIVRAPR Same 519473 chr17:48598040-48598228+ 6001 6001 374 13 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.624338624339 1.06211180124 -2.57134603175 0.9963 -4.70054761905 2.1292015873 0.0546000426468 0.568694139851 22211 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -18.4447301587 0.8803 -26.3002 7.85546984127 0.00995221626637 0.738757656177 30777 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000225648.3,ENST00000490419.1,ENST00000552000.2 NCintron,AntiCDS,AntiNC,AntiNCintron not annotated putative regulatory region 6382 539274 chr2:74218630-74218662- NoOverlap chr2 74218630 74218662 - 11.7880998362 11 0.971093863792 5.20953635194 6.57856348428 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;74218629;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A74218630-74218662-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A74218630-74218662&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.411139748953 0.367594300608 0.790597436998 74445757 74445789 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;74445756;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A74218630-74218662-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A74445757-74445789&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YRRETDSETTL Same 540652 chr2:74218630-74218662- 5912 5912 470 0 168 74218630 74221468 200 200;4879;6382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:74218630-74221468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.515151515152 0.471428571429 25.8084363636 0.9984 13.2258727273 12.5825636364 0.88686487684 0.836651397625 1339 99 99;1339;1947 58.5229363636 0.8928 30.7651727273 27.7577636364 0.974383207511 0.85752672102 1520 Best 1520 1520;1551;2702 0.0 0.0 ENST00000346834.8,ENST00000483195.5,ENST00000451608.2 UTR3,NC,NCintron coding exon(s) SLC4A5 exon skip leading to frameshift and alternative C terminus 6399 546344 chr21:8393349-8394242+ NoOverlap chr21 8393349 8394242 + 0.963770457912 298 0.175306550166 0.659649999775 0.304120458137 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8393348;894;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393349-8394242%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8393349-8394242&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.142112768475 0.367032599454 0.673405648043 153733 154626 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153732;894;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393349-8394242%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153733-154626&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDLGSGRAVRREASHRPSPPLASRRPLDALS*VSRGARSVYFEKIRVFKAGPSRLDTAARNNGIGPRFYFVGFRN*GHD*EGRPGAFVLRR*R*NSWTGARRTRAKAFAKNVFINQERKSEVRRRSDTVVVPTINDADRRCGGVIPMTRRAASGKPKSLGSGGSMVAKLKLKGIDGRAPPGVEPAA*FDSTRETSPGPDTDRIDRLIALSRFRGWWCMAVLSWWSDLSG*FR*RTRLWHAN*LRDPRAVGVPQLLRGTSGVQPPEIEQ*QVCDALRCPGLHARYTDWLSVCLPYAGRRG Same 547761 chr21:8393349-8394242+ 2149 2149 4250 205 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.573825503356 1.09337736195 -1.32926409396 0.2494 -1.74224496644 0.412980872483 0.0435632131445 0.531834572951 24632 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -1.66028288591 0.115 -2.05815268456 0.397869798658 0.0443250439047 0.394921526749 19922 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0 ENST00000623860.2,ENST00000625598.1 NCintron,AntiNC not annotated LSU-rRNA_Hsa 6400 546406 chr21:8437559-8438452+ NoOverlap chr21 8437559 8438452 + 0.963770457912 298 0.175306550166 0.659649999775 0.304120458137 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8437558;894;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437559-8438452%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8437559-8438452&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.142112768475 0.367032599454 0.673405648043 153733 154626 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153732;894;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437559-8438452%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153733-154626&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDLGSGRAVRREASHRPSPPLASRRPLDALS*VSRGARSVYFEKIRVFKAGPSRLDTAARNNGIGPRFYFVGFRN*GHD*EGRPGAFVLRR*R*NSWTGARRTRAKAFAKNVFINQERKSEVRRRSDTVVVPTINDADRRCGGVIPMTRRAASGKPKSLGSGGSMVAKLKLKGIDGRAPPGVEPAA*FDSTRETSPGPDTDRIDRLIALSRFRGWWCMAVLSWWSDLSG*FR*RTRLWHAN*LRDPRAVGVPQLLRGTSGVQPPEIEQ*QVCDALRCPGLHARYTDWLSVCLPYAGRRG Same 547819 chr21:8437559-8438452+ 2150 2150 4250 205 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.573825503356 1.09337736195 -3.44181409396 0.3 -3.72907751678 0.287263422819 0.0358935999253 0.501550690483 26721 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -5.22792147651 0.2262 -5.24466208054 0.0167406040268 0.0318794925796 0.3670892076 23193 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 ENST00000627981.1 AntiNC not annotated LSU-rRNA_Hsa 6408 572464 chr6:108166753-108166794+ NoOverlap chr6 108166753 108166794 + 4.66712140185 14 0.922472179533 -4.84942856431 9.51654996616 ENST00000368986.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108166752;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108166753-108166794%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108166753-108166794&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0082365513924 0.366758313802 1.05111227378 108487957 108487998 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108487956;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108166753-108166794%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108487957-108487998&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CRPGLGQRPPTAPPRDSQHEQASRINKWVPLGPPWGLGAQPGASER Same 573491 chr6:108166753-108166794+ 6743 6743 -335 0 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.5 -4.6531 0.9637 -9.10825714286 4.45515714286 -0.0409874713565 0.632304105871 67125 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 -19.2737714286 0.7877 -29.6544785714 10.3807071429 -0.0317716745235 0.594680653078 58721 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000368986.8 CDS not annotated putative regulatory region 6410 501752 chr14:62127829-62127903+ NoOverlap chr14 62127829 62127903 + 4.46869200587 25 0.924193179217 -0.384336061478 4.85302806735 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;62127828;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A62127829-62127903%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A62127829-62127903&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.385012985031 0.366703569835 0.883302509074 62594547 62594621 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;62594546;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A62127829-62127903%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A62594547-62594621&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLTYTLTTSKVAYFKRKYAEEEDLHQDYHGYFPK Same 503652 chr14:62127829-62127903+ 6731 6731 -321 0 221 62127829 62128391 275 275;6410;17264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:62127829-62128391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.346666666667 0.909090909091 1.717132 0.9616 -1.789004 3.506136 0.164342965815 0.659796850765 10643 220 220;10643;11309 7.583 0.874 -1.321544 8.904544 0.416614329613 0.787589714481 3869 398 398;3869;10933 0.0 0.0 ENST00000334389.5 NC pseudogene unitary pseudogene ENSG00000186369 6411 585615 chr8:144050386-144050448+ NoOverlap chr8 144050386 144050448 + 6.63293794933 21 0.567517902102 0.851042770204 5.78189517912 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144050385;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144050386-144050448%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144050386-144050448&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.291985271519 0.366686119142 0.925896246007 145105287 145105349 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145105286;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144050386-144050448%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145105287-145105349&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FEADREQSGEVVAFSVLLGDLNFDNCWK Same 586553 chr8:144050386-144050448+ 6881 6881 -470 0 591 144049161 144051191 902 902;1476;2944;3502;6411;8419;8554;19953;27554 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144049161-144051191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52380952381 0.947368421053 10.1535761905 0.8767 -1.47249047619 11.6260666667 0.700055374879 1.05169706341 2096 822 822;1234;1275;2096;2721;3466;4144;4232;11683 19.6315857143 0.6799 1.40376666667 18.2278190476 0.933874632095 0.991942446268 1924 1010 1010;1721;1924;2036;2359;2452;2682;3550;3684 0.0 0.282437691947 chr16:68364751-68364906- ENST00000528912.1 NC pseudogene unitary pseudogene (ENSG00000204791) 6419 579655 chr7:142313539-142313571+ NoOverlap chr7 142313539 142313571 + 9.73536357013 11 0.710580744502 -5.07215444608 14.8075180162 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142313538;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142313539-142313571%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142313539-142313571&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.280721588202 0.366477185276 0.984435425235 142013362 142013394 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142013361;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142313539-142313571%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142013362-142013394&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSINESVPSRFSPECPNSSLLNLHLHALQPEDSALYLCASSQDTALQSHR None NA NA 0 235 142308759 142313661 301 301;580;755;2301;6419;13330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142308759-142313661&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.424242424242 0.6875 6.51329090909 0.9226 -4.57878181818 11.0920727273 0.269308835946 1.00521295626 6365 920 920;2287;2398;2499;3331;6365 2.73406363636 0.4798 -19.5494727273 22.2835363636 0.303902896092 1.05679563327 4592 1287 1287;2253;2669;3117;3138;4592 0.0 0.0 ENST00000390357.3 NC immunoglobulin segment overlaps an immunoglobulin region 6442 476486 chr1:244730714-244730827- NoOverlap chr1 244730714 244730827 - 6.30556576542 38 0.464684600033 3.49176577204 2.81379999338 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244730713;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244730714-244730827-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244730714-244730827&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.383490162784 0.365447243939 0.740405000121 244894016 244894129 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244894015;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244730714-244730827-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244894016-244894129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDPEAVGRRAVAGDGGSCSGCWCWRRLFRGPRRKKLRQAHAR Same 478380 chr1:244730714-244730827- 6922 6922 -480 0 1209 244730511 244730827 1827 1827;6442;39659;57601 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244730511-244730827&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.771929824561 1.05555555556 6.22984473684 0.5539 0.588386842105 5.64145789474 0.355700880077 0.914274614952 4590 1411 1411;4590;49722;61439 4.94870263158 0.3949 0.194815789474 4.75388684211 0.285619810761 0.683227267995 4783 2751 2751;4783;48536;48762 0.0 0.191317962431 chr4:154489304-154491355- protein-coding gene protein coding gene ENSG00000284188 6474 595162 chrX:49879588-49879755+ NoOverlap chrX 49879588 49879755 + 4.12057507663 56 0.721714405607 2.03276608046 2.08780899617 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;49879587;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A49879588-49879755%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A49879588-49879755&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.544740348069 0.364280275662 0.71713546223 49644191 49644358 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;49644190;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A49879588-49879755%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A49644191-49644358&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEAAGKAEAAGKVDATEKVETAGKVDAAGKVETAEGPGRRAELKLEPEPEPVREAEQEPK Same 595804 chrX:49879588-49879755+ 6727 6727 -253 0 490 49878962 49880307 724 724;6474;8567;14080;37462 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:49878962-49880307&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.755952380952 1.01379310345 2.83569464286 0.7328 0.543542857143 2.29215178571 0.226097985062 0.685800821089 7761 671 671;7761;13348;22106;48276 -6.66628928571 0.5944 -4.83519107143 -1.83109821429 -0.0219118722929 0.410830248916 49684 433 433;14478;35334;44633;49684 0.0 0.105528691498 chr14:49800420-49800696- pseudo-exon USP27X pseudogenic sequence upstream of ATG 6475 565158 chr5:122374053-122374133+ NoOverlap chr5 122374053 122374133 + 3.24711849954 27 0.960422053243 -3.19094435815 6.4380628577 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;122374052;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122374053-122374133%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A122374053-122374133&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.146240639377 0.36425672374 1.0163395304 121709748 121709828 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;121709747;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A122374053-122374133%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A121709748-121709828&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVEFFYGKIFFVLIDILSLAILVFVCFWMSFLLSER Same 566149 chr5:122374053-122374133+ 7818 7818 -1343 0 83 122373512 122374412 96 96;483;792;813;893;6475 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:122373512-122374412&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.296296296296 0.6 4.37057407407 0.998 -4.79953703704 9.17011111111 0.616271663501 1.04346006221 2458 592 592;628;689;1305;1845;2458 1.67546666667 0.6603 -11.6406666667 13.3161333333 0.441525803032 0.95836804137 3772 1664 1664;1963;2350;2533;2860;3772 0.0 0.0 ENST00000261367.11,ENST00000508017.5,ENST00000507143.1 UTR5intron,NCintron,AntiNCintron pseudo-exon SNCAIP untranscribed pseudo-exon. Subsequent reanalysis following the completion of this study suggests it may in fact be an ancient vomeronasal receptor unitary pseuodgene. 6492 579666 chr7:142389635-142389667+ NoOverlap chr7 142389635 142389667 + 10.3905727647 11 0.854707755051 1.53185451437 8.85871825029 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142389634;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142389635-142389667%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142389635-142389667&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.366154090891 0.363827340712 0.981246334317 142242314 142242282 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142242313;-31;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142389635-142389667%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142242314-142242282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QFHDYCSEMNVSALELGDSALYLCARSLAQPCR None NA NA 0 362 142381077 142408131 503 503;2671;2771;4607;6492;14294;16204;21550;22314 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142381077-142408131&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575757575758 0.366666666667 0.0803090909091 0.8631 -5.24388181818 5.32419090909 -0.017079276029 0.686080970433 52081 2259 2259;2284;2682;2903;3300;3654;22326;44473;52081 6.16843636364 0.4943 -1.61542727273 7.78386363636 0.138860720248 0.63702177211 8592 2619 2619;2643;2937;3046;3257;3635;4345;4428;8592 0.0 0.0 ENST00000390362.1 NC immunoglobulin segment overlaps an immunoglobulin region 6497 500763 chr14:22532501-22532554+ NoOverlap chr14 22532501 22532554 + 6.11707773474 18 0.935550130126 0.583122399118 5.53395533562 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22532500;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22532501-22532554%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22532501-22532554&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.407964147981 0.363755773051 0.883157266485 23001451 23001504 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23001450;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22532501-22532554%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23001451-23001504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWVEIPNTANHFCMGICYSVNSGYSTLTFGKGTMLLVSPGTC None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 8.43365555556 0.9854 2.33636666667 6.09728888889 0.527975043903 0.802521439337 2947 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 8.16090555556 0.3505 0.615005555556 7.5459 0.224450740091 0.684293826268 5653 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390526.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 6507 469000 chr1:216518138-216518203+ NoOverlap chr1 216518138 216518203 + 6.87051811543 22 0.997632077238 5.64461822672 1.22589988871 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;216518137;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A216518138-216518203%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A216518138-216518203&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.615762170703 0.363515633958 0.39461666691 216691480 216691545 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;216691479;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A216518138-216518203%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A216691480-216691545&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AIWFFIFQRG*AQPEIDRHIWPQK Same 470879 chr1:216518138-216518203+ 7148 7148 -641 10 1433 216503390 216521946 2138 2138;6507;13807;38000;72611 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:216503390-216521946&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.515151515152 0.6875 -0.514331818182 1.0 -1.71760454545 1.20327272727 0.00814188087282 0.422570462733 37603 4547 4547;8285;24475;37603;53108 -3.71832727273 0.9816 -9.55570454545 5.83737727273 0.0546565252447 0.643493497969 17814 9393 9393;17814;24382;28116;57830 0.0 0.0 ENST00000359162.6 AntiCDSintron not annotated putative regulatory region 6513 491086 chr12:40421228-40421254+ NoOverlap chr12 40421228 40421254 + 8.16914439201 9 0.833005264363 -4.87380006578 13.0429444578 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40421227;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40421228-40421254%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40421228-40421254&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.114204738171 0.363133760221 1.01417906842 40815030 40815056 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40815029;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40421228-40421254%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40815030-40815056&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLPFYIYLYFIFFTVQIPYNNKLIHIKKYGEHNVLNSR Same 493063 chr12:40421228-40421254+ 6319 6319 194 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.222222222222 0.0 12.1040222222 0.9723 -5.2733 17.3773222222 0.558379351596 1.01008413276 2772 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 16.8513777778 0.4697 -10.8239333333 27.6753111111 0.518989356215 1.05161309487 3459 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 6516 482195 chr10:113119136-113119180- NoOverlap chr10 113119136 113119180 - 9.39506672422 15 0.818249790188 6.85092659394 2.54414013028 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113119135;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119136-113119180-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113119136-113119180&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.536019724658 0.363037161595 0.458606839607 114878895 114878939 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114878894;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119136-113119180-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114878895-114878939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVNFDSKESTRIRSGPIMR Same 484119 chr10:113119136-113119180- 6480 6480 36 0 719 113118964 113126911 1110 1110;6516;16816;37245;38490;54651;58469;62875;67669;70173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118964-113126911&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 1.15384615385 1.74582 0.9046 0.68158 1.06424 0.00154726334933 0.359816196006 40718 4406 4406;18572;33940;40718;63931;65767;72176;72358;72407;73429 -1.62465333333 0.899 -2.44314666667 0.818493333333 -0.00631459726108 0.39004636008 38764 6655 6655;10141;25415;26332;35901;38764;51629;51984;53928;72240 0.0 0.0 ENST00000346198.5 AntiCDSintron not annotated putative regulatory region 6558 494599 chr12:22116633-22116662- NoOverlap chr12 22116633 22116662 - 13.2725601792 10 0.79882200351 0.580200142413 12.6923600368 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;22116632;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22116633-22116662-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A22116633-22116662&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.369663969273 0.361314817697 0.999240003865 22269567 22269596 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;22269566;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22116633-22116662-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A22269567-22269596&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SYHLCLTSSRNLVFR Same 496596 chr12:22116633-22116662- 7196 7196 -638 0 58 22116633 22134940 65 65;1060;2224;6558;10486;27168 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:22116633-22134940&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.0 14.20269 0.9562 -0.92769 15.13038 0.612496344162 1.01954384934 2475 904 904;2475;2558;2619;3486;6653 26.67808 0.585 3.36308 23.315 0.816657974904 0.990373935395 2424 88 88;1118;2424;2918;3483;7533 0.0 0.0 ENST00000537795.1 NCintron pseudogene unitary pseudogene ENSG00000283582 6559 520820 chr17:29133798-29133836- NoOverlap chr17 29133798 29133836 - 10.1561384201 13 0.885297932403 6.44826926176 3.70786915834 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;29133797;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29133798-29133836-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A29133798-29133836&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.479626614483 0.361309448163 0.559425233633 27460816 27460854 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;27460815;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29133798-29133836-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A27460816-27460854&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQVTFSAMAFSSRFAFWEQK Same 522238 chr17:29133798-29133836- 6425 6425 134 0 147 29124548 29133836 176 176;1108;2567;6559;7208;9587 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:29124548-29133836&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.487179487179 0.433333333333 14.4903461538 1.0 7.72085384615 6.76949230769 0.675901006805 0.748616440608 2179 498 498;1507;2077;2179;3115;4205 30.9620076923 0.6273 14.7274846154 16.2345230769 0.87839932175 0.842381897161 2200 450 450;1147;2200;2400;2550;3310 0.0 0.113506735323 chr17:17817256-17817457- ENST00000590565.1,ENST00000527372.5,ENST00000528322.6 NC,CDSintron,NCintron coding exon(s) MYO18A alternative first exon plus four cassette exons 6565 493936 chr12:132127088-132127177+ NoOverlap chr12 132127088 132127177 + 5.63535998464 30 0.368273441672 -0.948856667926 6.58421665256 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132127087;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132127088-132127177%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132127088-132127177&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.108540558743 0.361074881266 1.02681118569 132611633 132611722 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132611632;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132127088-132127177%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132611633-132611722&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAVQPLHMQQLRKLKHHQQ*KAVQPSAAPGLLLHSGR Same 495927 chr12:132127088-132127177+ 7201 7201 -636 10 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.588888888889 0.263929618768 11.492 0.549 -2.86199 14.35399 0.73863615967 1.02796355119 1935 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 21.40123 0.3784 -2.91501 24.31624 1.01501780593 1.05437043475 850 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.977321728888 chr12:132067362-132067486+ 0.761066287391 chr12:132067362-132067486+ ENST00000475841.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 6568 590725 chr9:130712976-130713005+ NoOverlap chr9 130712976 130713005 + 16.1121500701 10 0.920331120775 12.2067498207 3.90540024936 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;130712975;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A130712976-130713005%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A130712976-130713005&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.428546097352 0.360980567481 0.353304980099 133588363 133588392 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;133588362;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A130712976-130713005%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A133588363-133588392&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLGHPGPLEAGSGRRRGRGR Same 591678 chr9:130712976-130713005+ 6798 6798 -230 0 1128 130712624 130713721 1714 1714;6568;35946 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:130712624-130713721&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.866666666667 1.125 4.41815 0.8891 -4.02845 8.4466 0.0881212016686 0.88987579336 17247 2454 2454;17247;57204 -2.25741 0.4614 -8.39402 6.13661 -0.0115837717994 0.566904116528 41890 4108 4108;30206;41890 0.0 0.0 not annotated putative regulatory region 6600 505820 chr14:105740057-105740182- NoOverlap chr14 105740057 105740182 - 5.84163807616 42 0.347943120179 1.86827143317 3.97336664299 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105740056;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105740057-105740182-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105740057-105740182&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.218030824396 0.359722030109 0.890981874755 106206394 106206519 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106206393;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105740057-105740182-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106206394-106206519&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PPPSCPELQLEESCAEAQDGELDGLWTTITIFITLFLLSVCYSATVTFFKVGR None NA NA 0 546 105737771 105743011 829 829;1682;2080;6140;6600;28138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105737771-105743011&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.603174603175 0.7 14.2385 0.7334 2.98161904762 11.2568809524 1.06424248039 1.0505590575 114 5 5;31;57;114;876;1915 12.342752381 0.553 -3.77012380952 16.1128761905 0.960277619817 1.02633246773 1691 82 82;224;483;1691;2370;2712 0.0 0.0767709716381 chr11:65396799-65397020+ ENST00000390548.6,ENST00000618756.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 6610 467694 chr1:160262310-160262348+ NoOverlap chr1 160262310 160262348 + 7.13020788706 13 0.878426677465 -1.27402308784 8.4042309749 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;160262309;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160262310-160262348%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A160262310-160262348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.282707961185 0.3594804798 1.02048208265 160232100 160232138 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;160232099;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160262310-160262348%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A160232100-160232138&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGVSGWGSYKHGNRRGSAAR Same 469560 chr1:160262310-160262348+ 6402 6402 208 0 695 160262310 160262658 1078 1078;1192;6610;14541;28188 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:160262310-160262658&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641025641026 0.75974025974 4.45484615385 0.9018 -1.37571538462 5.83056153846 0.125983814303 0.743741266373 13442 3400 3400;4685;5491;10173;13442 5.05529230769 0.3212 -1.61405384615 6.66934615385 0.0710972231375 0.612616378214 15012 6373 6373;6638;7045;12631;15012 0.0 0.0 ENST00000442130.1,ENST00000326837.6,ENST00000485079.1,ENST00000368074.5,ENST00000461888.5 NCintron,AntiUTR5,AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 6627 572277 chr6:99400282-99400314+ NoOverlap chr6 99400282 99400314 + 12.4264545386 11 0.899205837269 7.68826380372 4.73819073493 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;99400281;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99400282-99400314%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A99400282-99400314&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.431153108975 0.359056611427 0.582153018132 99848158 99848190 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;99848157;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99400282-99400314%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A99848158-99848190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSWHSCHIIPQRLRRGGVVDLK Same 573302 chr6:99400282-99400314+ 6412 6412 215 0 559 99400282 99414614 850 850;6627;41535;67777 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:99400282-99414614&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575757575758 1.41428571429 8.44800909091 0.9617 6.13856363636 2.30944545455 0.188975306261 0.399164265767 9278 2736 2736;9278;39855;60784 23.2018818182 0.9024 21.9835909091 1.21829090909 0.45549687685 0.317627085984 3708 3532 3532;3708;32779;67353 0.0 0.0 ENST00000369239.9,ENST00000481229.1 AntiUTR3,AntiNC not annotated putative regulatory region 6635 503437 chr14:23095064-23095189- NoOverlap chr14 23095064 23095189 - 4.11271428636 42 0.957646041555 2.36306431765 1.74964996871 ENST00000262710.5,ENST00000457657.5,ENST00000555053.5,ENST00000605057.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23095063;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23095064-23095189-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23095064-23095189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.57693019116 0.358780282072 0.6195668942 23564273 23564398 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23564272;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23095064-23095189-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23564273-23564398&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SMAVGGVISVRSKGVGGNYRRCPKPSGRTRVPHARWRSWRR*LWTGSLFRR Same 505276 chr14:23095064-23095189- 6804 6804 -169 9 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.626984126984 1.17287234043 -0.0228404761905 0.9999 -0.695292857143 0.672452380952 0.0813465675127 0.469280208627 18101 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 -12.3226 0.7331 -13.2802666667 0.957666666667 -0.0557018964763 0.478043199979 72931 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.117104206285 chr19:5623206-5623394+ ENST00000262710.5,ENST00000319074.5 CDS,AntiUTR5 protein-coding gene protein-coding gene ENSG00000283654 6657 548078 chr22:21468354-21468434+ NoOverlap chr22 21468354 21468434 + 5.48828889485 27 0.426498139247 -1.12052967813 6.60881857298 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21468353;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21468354-21468434%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21468354-21468434&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.123848273085 0.358161236908 1.01787175173 21822643 21822723 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21822642;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21468354-21468434%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21822643-21822723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFYYGGELQSQKSTEQQLAAQLVTLQVLER Same 549498 chr22:21468354-21468434+ 7143 7143 -486 0 857 21467445 21469818 1328 1328;2227;3023;6657;7795;18550;21659 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21467445-21469818&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.566433566434 12.3197185185 0.7947 -2.84894814815 15.1686666667 0.902252333392 1.02111800937 1287 1035 1035;1287;1331;1719;1904;4183;5351 7.669 0.4253 -11.2092925926 18.8782925926 0.724218218789 1.06092857289 2733 2446 2446;2467;2733;2842;3549;4935;9390 0.547663489856 chr22:18529019-18529093+ 0.481399527173 chr22:18529019-18529093+ ENST00000413877.5 NC protein-coding gene protein coding gene ENSG00000206140 6685 481114 chr10:75401685-75401795- NoOverlap chr10 75401685 75401795 - 5.36211085964 37 0.816113939529 4.75718909663 0.604921763008 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75401684;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401685-75401795-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75401685-75401795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.747690300703 0.357406539616 0.435324631636 77161443 77161553 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77161442;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401685-75401795-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77161443-77161553&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPWCSCF*SEFPRQSPGWTRSGSHRRAQRRRGAARTQRRGAAR Same 483028 chr10:75401685-75401795- 7094 7094 -409 5 3027 75401238 75417825 4228 4228;6685;19248;23964;26231;42519;58489;66465;71052;72621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75401238-75417825&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.702702702703 1.10119047619 1.67992432432 0.936 -0.543786486486 2.22371081081 0.180617455577 0.614988564996 9680 Best 9680 9680;11699;11870;23869;27311;40902;43730;53944;63556;72593 -8.57378918919 0.7629 -12.3588 3.78501081081 0.0118482917888 0.604748569924 29979 8483 8483;11906;14750;22472;22714;29979;35309;42843;42916;72930 0.0 0.0371928531546 chr16:2115378-2115625- ENST00000372524.4,ENST00000466942.2 UTR5,AntiNC not annotated putative regulatory region 6691 534693 chr2:109971662-109971727+ NoOverlap chr2 109971662 109971727 + 5.67494548248 22 0.427405203326 -3.32596361095 9.00090909343 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;109971661;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109971662-109971727%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A109971662-109971727&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0863073965149 0.357192794156 1.05681050322 110729239 110729304 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110729238;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109971662-109971727%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110729239-110729304&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFPKPPEHPAQYPLCLLLFMFSVLMFCLMALKLFGNR*AHFSGSFCLGILPYLG Same 536045 chr2:109971662-109971727+ 6823 6823 -132 1 674 109963466 109974092 1038 1038;1288;1607;3960;4614;5824;6691;9138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:109963466-109974092&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.454545454545 0.315789473684 10.0106045455 0.5402 -5.05465 15.0652545455 0.524043550914 1.03135461915 2974 1343 1343;1741;2554;2750;2805;2859;2974;4366 30.2603409091 0.7123 -8.63188181818 38.8922227273 1.06015367482 0.985270338863 225 119 119;225;546;552;1151;1223;1320;1375 0.0 0.0 ENST00000454928.5 NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000186148) 6725 591988 chr9:61108263-61108325- NoOverlap chr9 61108263 61108325 - 7.09329518818 21 0.549492637522 1.94616203933 5.14713314885 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61108262;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61108263-61108325-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61108263-61108325&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.312113594384 0.35635530704 0.866413660869 43849808 43849746 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;43849807;-61;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61108263-61108325-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A43849808-43849746&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSCKPHTSLSFLSASLCHFILISCLYVSAYLQSCK Different 592938 chr9:61108221-61108325- 2242 2242 4483 0 412 61096906 61113907 579 579;1316;6725;6965;20633;21300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61096906-61113907&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.603174603175 0.35 6.41421428571 0.4581 1.67694761905 4.73726666667 0.0989509073418 0.731408925326 15960 3401 3401;4265;9880;14496;15960;37173 38.7512142857 0.8051 5.48905238095 33.2621619048 1.02933066195 1.04008065577 634 Best 634 634;935;978;1145;1930;2566 0.942537539737 chr9:41964538-41964644- 0.81772737598 chr9:41964538-41964644- redundant PhyloCSF signals are accounted for elsewhere on the list 6749 469149 chr1:221742387-221742413+ NoOverlap chr1 221742387 221742413 + 9.60457760758 9 0.90512279274 -2.27668900622 11.8812666138 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;221742386;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A221742387-221742413%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A221742387-221742413&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.207611724141 0.355939076046 1.02756596823 221915729 221915755 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;221915728;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A221742387-221742413%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A221915729-221915755&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSCSLFTCKPNRQDAVNPLPG Same 471028 chr1:221742387-221742413+ 6187 6187 562 0 850 221741882 221742912 1318 1318;6749;37227 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:221741882-221742912&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 1.10204081633 3.32517777778 0.9729 -13.4423333333 16.7675111111 0.221533071588 1.02082959328 7919 Best 7919 7919;8066;48743 -2.70185555556 0.6728 -21.8840111111 19.1821555556 0.149889471709 0.993351629872 8028 Best 8028 8028;8463;49102 0.0 0.0 not annotated putative regulatory region 6770 508736 chr15:45201131-45201160- NoOverlap chr15 45201131 45201160 - 10.5788099766 10 0.812330815595 -1.61488986015 12.1936998367 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;45201130;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45201131-45201160-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A45201131-45201160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.299511856994 0.355145424976 1.02194370359 45493329 45493358 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;45493328;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45201131-45201160-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A45493329-45493358&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLTTIRSRRATGTPR Same 510460 chr15:45201131-45201160- 7055 7055 -285 0 1111 45198578 45201222 1685 1685;3658;6770;7314;14365;15805;20741;57385 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:45198578-45201222&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.7 1.63636363636 1.84413 0.9951 -12.62485 14.46898 0.199828884201 1.04631067031 8787 5595 5595;8787;14727;17218;22093;24393;42532;65917 0.15139 0.3504 -14.42787 14.57926 0.0706579829233 0.88544799488 15084 8460 8460;15084;16682;28123;29490;30928;42026;53935 0.0 0.0 ENST00000290894.12 UTR5 not annotated 3 tRNAs 6832 492537 chr12:79935303-79935332+ NoOverlap chr12 79935303 79935332 + 8.05516004562 10 0.855506218051 -3.1724599719 11.2276200175 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;79935302;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A79935303-79935332%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A79935303-79935332&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.176175923073 0.353127375371 1.03946915882 80329083 80329112 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;80329082;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A79935303-79935332%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A80329083-80329112&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAPANCGGGGWATRGKRVWPR Same 494519 chr12:79935303-79935332+ 6582 6582 250 0 1500 79934559 79935332 2233 2233;6832;14345;23299 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:79934559-79935332&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.267857142857 -3.33758 0.9517 -11.67609 8.33851 -0.0273069831765 0.877065911923 58885 7188 7188;11401;16080;58885 -10.23634 0.4446 -18.12401 7.88767 -0.0287238882968 0.599887340431 55960 8714 8714;10259;11130;55960 0.0 0.0 ENST00000552885.2,ENST00000261207.9 NC,AntiUTR5intron not annotated putative regulatory region 6866 574603 chr6:34247466-34247507- NoOverlap chr6 34247466 34247507 - 8.41910716891 14 0.612544005929 -0.616178606238 9.03528577515 ENST00000394990.8,ENST00000468145.1,ENST00000476320.5,ENST00000481533.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34247465;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34247466-34247507-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34247466-34247507&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.275055243036 0.35222038624 1.03343013688 34215243 34215284 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34215242;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34247466-34247507-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34215243-34215284&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVEVGLSLPVGLPGLSSPHSAVSLLQVMYVQKKKR Same 575635 chr6:34247466-34247507- 7618 7618 -752 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.428571428571 0.646153846154 11.52255 0.933 0.486257142857 11.0362928571 0.580307572631 1.00457451994 2653 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 17.5884857143 0.4592 -1.82943571429 19.4179214286 0.634173366006 0.985868914277 3048 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0 ENST00000394990.8,ENST00000495581.1,ENST00000335352.7 CDS,NC,UTR5intron protein-coding gene protein-coding gene ENSG00000186577 6900 494104 chr12:3303334-3303387- NoOverlap chr12 3303334 3303387 - 8.07498896619 18 0.560719886744 2.7253388779 5.34965008828 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3303333;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3303334-3303387-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3303334-3303387&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.331457580908 0.35123914038 0.848440358984 3412500 3412553 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3412499;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3303334-3303387-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3412500-3412553&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAASPSYLLLMGAMGIRVACLEVSCSWEIR Same 496099 chr12:3303334-3303387- 7442 7442 -542 0 531 3298233 3307795 799 799;1890;3339;6900;15956;21198;23499 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3298233-3307795&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.648148148148 0.188811188811 10.9631166667 0.9937 1.44921666667 9.5139 0.753482796314 0.985210590869 1852 197 197;419;1376;1520;1852;2555;9275 28.6271 0.706 8.81663888889 19.8104611111 1.01252279684 0.975811662272 903 223 223;711;903;924;1207;1939;10886 1.16334208375 chr12:30983064-30983150+ 1.24303817274 chr12:30983064-30983150+ pseudogene tetraspanin 11 (TSPAN11) pseudogene (ENSG00000250770); single locus on multiple rows 6905 534744 chr2:110348757-110348789+ NoOverlap chr2 110348757 110348789 + 13.332745292 11 0.632206246489 0.0771000818773 13.2556452101 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110348756;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110348757-110348789%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110348757-110348789&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.362148288323 0.351022059915 1.00540547418 111106334 111106366 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111106333;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110348757-110348789%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111106334-111106366&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HIPTLDTPSPLSVPASAGAEFPLCVPPGSESYQGHSCPVGHYCPAGTR Same 536096 chr2:110348757-110348789+ 7842 7842 -937 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 0.25 16.0538727273 0.765 1.73619090909 14.3176818182 0.377583548615 1.00988861753 4292 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 34.1344545455 0.7248 -9.47599090909 43.6104454545 1.03089983216 0.999034835961 614 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 6915 531726 chr19:48491391-48491540- NoOverlap chr19 48491391 48491540 - 3.29618800944 50 0.590694438087 -0.55603589654 3.85222390598 ENST00000270238.3,ENST00000600059.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48491390;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48491391-48491540-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48491391-48491540&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.210261261255 0.350788208342 0.903703929755 48994648 48994797 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48994647;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48491391-48491540-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48994648-48994797&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAFTGDANQRAERPGPPRGGHGPVNASSAPDTSPPRHPRRWVSQQRQRLW*GRALWGGR Same 533201 chr19:48491391-48491540- 7539 7539 -624 3 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.72 0.745738636364 -1.969706 0.8452 -8.355072 6.385366 0.170950011277 0.935459313909 10240 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -14.931272 0.563 -24.654826 9.723554 0.0528434180619 0.819546077631 18150 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.226746843903 chr17:81119936-81120083- ENST00000270238.3 CDS coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 6920 569173 chr5:140590883-140590909- NoOverlap chr5 140590883 140590909 - 11.3626999739 9 0.830304417487 -3.57475570838 14.9374556823 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140590882;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140590883-140590909-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140590883-140590909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.26591056354 0.350695963664 0.990600523978 139970468 139970494 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139970467;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140590883-140590909-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139970468-139970494&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VWQGALRILQLPGAP Same 570186 chr5:140590883-140590909- 7007 7007 -87 0 59 140590883 140594367 66 66;3111;5039;6920;27936 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140590883-140594367&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.385714285714 13.4306666667 0.9849 -8.68095555556 22.1116222222 0.61517199575 0.962263762732 2463 89 89;1580;2076;2463;3172 18.6430111111 0.3797 -10.3611444444 29.0041555556 0.38340700259 1.051225934 4044 1915 1915;3790;4044;4161;4734 0.0 0.0 ENST00000507279.5 NC pseudogene unitary pseudogene ENSG00000283602 6927 555625 chr3:49120805-49120861- NoOverlap chr3 49120805 49120861 - 6.53676303437 19 0.768776025667 2.19964198062 4.33712105375 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;49120804;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A49120805-49120861-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A49120805-49120861&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.451658104551 0.350591953586 0.764884873943 49158238 49158294 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;49158237;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A49120805-49120861-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A49158238-49158294&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGGAGTGEGRAGTGTDLRRNRNGER Same 556579 chr3:49120805-49120861- 6876 6876 51 0 525 49108464 49120972 782 782;6927;11608;22914;38563 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:49108464-49120972&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.771929824561 1.24183006536 -0.608673684211 0.8731 -3.04677368421 2.4381 -0.0104065356084 0.510491624553 47390 1900 1900;11326;19488;30342;47390 -0.361194736842 0.4101 -7.16281578947 6.80162105263 0.0922243398417 0.670256124051 12326 2475 2475;12326;33524;38234;67129 0.0 0.134624478728 chr20:62315948-62316058- ENST00000398888.6,ENST00000488993.5 UTR5,NC under investigation USP19 potential non-ATG start 6935 509993 chr15:95455034-95455162- NoOverlap chr15 95455034 95455162 - 2.41264882337 43 0.869596398871 -2.39105582376 4.80370464713 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;95455033;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95455034-95455162-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A95455034-95455162&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.158410398602 0.350357904232 0.968859265114 95998263 95998391 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;95998262;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95455034-95455162-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A95998263-95998391&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MFCDFK*KLFCCWANKFKPLNMAEKVRQAYYSDHSVTAIAIDRCSLESPIIR Same 511728 chr15:95455034-95455162- 6801 6801 134 6 5012 95454977 95464832 Best 6935 6935;26656;62257;72347 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:95454977-95464832&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.403100775194 0.580209895052 -1.12342790698 1.0 -1.82996511628 0.706537209302 0.0258946433764 0.460098427109 30292 Best 30292 30292;68270;69892;73588 -4.5379627907 0.7578 -6.5488372093 2.0108744186 0.0583591646859 0.563789050238 17131 Best 17131 17131;65875;68290;73140 0.0 0.0 ENST00000554837.5 AntiNCintron not annotated potentially spurious 6945 582706 chr7:136903193-136903228- NoOverlap chr7 136903193 136903228 - 8.38601687054 12 0.97172121767 0.358483328794 8.02753354174 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;136903192;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A136903193-136903228-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A136903193-136903228&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.313602922204 0.350178466314 0.985335373821 136587940 136587975 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;136587939;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A136903193-136903228-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A136587940-136587975&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDPPGDPWCRTMNFPNQQGLHK Same 583668 chr7:136903193-136903228- 6899 6899 46 0 5021 136903193 136903228 Best 6945 6945 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:136903193-136903228&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.4 -1.62176666667 0.9991 -1.639025 0.0172583333333 -0.0414056498726 0.262155321279 67352 Best 67352 67352 -8.36625833333 0.5511 -7.90956666667 -0.456691666667 -0.0382241425746 0.30778111237 63910 Best 63910 63910 0.0 0.0 ENST00000608269.1,ENST00000425981.2,ENST00000384865.1,ENST00000320658.9 NC,NCintron,AntiNC,AntiUTR5intron not annotated potentially spurious 6953 519794 chr17:1724654-1724692- NoOverlap chr17 1724654 1724692 - 5.46931527211 13 0.868293513155 -4.05430796055 9.52362323266 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;1724653;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1724654-1724692-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A1724654-1724692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.088899218227 0.350049557368 1.04939652798 1627948 1627986 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;1627947;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1724654-1724692-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A1627948-1627986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSRDRPSTETSARGSR Same 521201 chr17:1724654-1724692- 6813 6813 140 0 960 1713893 1724692 1472 1472;3348;6953;15387;36265;37604;43154 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:1713893-1724692&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.18181818182 -1.37112307692 0.8571 -10.2397 8.86857692308 0.0369759170199 0.936316173961 26440 5776 5776;16857;18965;26440;56587;71733;73726 -10.2868923077 0.4678 -24.5700230769 14.2831307692 0.0366839800203 0.848240839339 21855 10479 10479;11209;21855;38681;45206;66911;67671 0.0 0.0 ENST00000419248.5,ENST00000437219.6,ENST00000309182.9,ENST00000492901.1 AntiUTR5,AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 6965 591985 chr9:61096975-61097037- NoOverlap chr9 61096975 61097037 - 7.59155237959 21 0.395300221256 0.368257158569 7.22329522102 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61096974;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61096975-61097037-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61096975-61097037&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.156362545858 0.349803865118 1.01180447614 43861067 43861005 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;43861066;-61;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61096975-61097037-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A43861067-43861005&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FCSADSAWTVVRHGGPDAVTLRGAPSGHPR Same 592936 chr9:61096975-61097037- 7666 7666 -701 0 412 61096906 61113907 579 579;1316;6725;6965;20633;21300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61096906-61113907&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 0.945 9.17151904762 0.3627 1.84245714286 7.32906190476 0.176612663403 0.908910149631 9880 3401 3401;4265;9880;14496;15960;37173 21.4706428571 0.5571 3.28276190476 18.1878809524 0.93270640023 0.985243718215 1930 634 634;935;978;1145;1930;2566 0.999936805058 chr9:41953183-41953386- 0.97354366091 chr9:39132932-39133135- redundant PhyloCSF signals are accounted for elsewhere on the list 6996 531727 chr19:48493758-48494021- NoOverlap chr19 48493758 48494021 - 3.40830112587 88 0.403279129126 0.673509077762 2.73479204811 ENST00000270238.3,ENST00000600059.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48493757;264;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48493758-48494021-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48493758-48494021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.250956673658 0.349145750563 0.8002815625 48997015 48997278 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48997014;264;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48493758-48494021-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48997015-48997278&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQALPALAGAAAAHAHAIPGAGPAAAPVGGRGRRGGWRGGRRGGSAGAGGGGRGGRGRGRGGGRGGGGAGRGGGAAGPREGASSPGARRGEQRRRGRGPPAAGAAQVSARGRRARGQR Same 533202 chr19:48493758-48494021- 5797 5797 1199 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 1.14894750866 0.626832954545 0.6337 -2.57832840909 3.20516136364 0.231399833363 0.709362145807 7573 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -18.444125 0.7331 -22.4183613636 3.97423636364 -0.0162203778255 0.621034426594 45236 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.352640824294 chr17:81120201-81122823- ENST00000270238.3 CDS coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 7001 472218 chr1:46466780-46466815- NoOverlap chr1 46466780 46466815 - 10.198991408 12 0.822738485796 4.2867167294 5.91227467855 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;46466779;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466780-46466815-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A46466780-46466815&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.410373911609 0.348975905131 0.790223365078 46932452 46932487 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;46932451;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466780-46466815-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A46932452-46932487&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGRSRPRGLIRAPR Same 474096 chr1:46466780-46466815- 6759 6759 242 0 1039 46448320 46466815 1586 1586;4166;4364;6954;7001;12344;14948;21944;27913;29912;31134;37875;42326;63692;65303;68731;69308;69969;73272 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:46448320-46466815&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.805555555556 1.2 2.68310833333 0.8578 0.315833333333 2.367275 -0.000213167224122 0.442070856932 41616 4552 4552;6553;11146;21508;25219;29368;31194;34313;35285;35620;41616;45262;45465;48699;48843;51388;55674;57607;70045 1.47913333333 0.2921 -1.364525 2.84365833333 -0.00802249038753 0.449149504978 39757 11286 11286;13413;13817;24293;29223;30818;32582;34899;38187;38198;39757;43966;44176;46982;51189;51970;55751;61426;67777 0.0 0.0 ENST00000455247.1 AntiNCintron not annotated putative regulatory region 7023 500689 chr14:21990892-21990933+ NoOverlap chr14 21990892 21990933 + 6.8642715056 14 0.886578600312 -0.606571487018 7.47084299262 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21990891;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21990892-21990933%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21990892-21990933&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.311233931817 0.348323753036 0.987156164664 22459131 22459172 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22459130;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21990892-21990933%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22459131-22459172&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPFAQEEDSAMYYCALSGTVAGFAR None NA NA 0 69 21990718 21990933 78 78;1846;7023 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21990718-21990933&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.428571428571 0.0 2.64312857143 0.7762 -5.75429285714 8.39742142857 0.116045923254 0.926973726866 14300 3170 3170;3353;14300 11.4584428571 0.5176 -6.01904285714 17.4774857143 0.541053226868 0.969004760891 3384 2746 2746;2756;3384 0.0 0.0 ENST00000390444.1 NC immunoglobulin segment overlaps an immunoglobulin region 7035 491029 chr12:31015711-31015824+ NoOverlap chr12 31015711 31015824 + 5.66457894601 38 0.296235037124 -0.0747578404844 5.7393367865 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;31015710;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A31015711-31015824%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A31015711-31015824&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.122810831165 0.348037604102 1.01085467449 31168645 31168758 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;31168644;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A31015711-31015824%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A31168645-31168758&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAHPPPAGNPGHAGASVNPTIVSSHQADASVNLTIVSPHQAGASSILPAINFITTIINIKPAAMSQYQPPLFV*QALVTPGGLAAAEELGEASQNR Same 493006 chr12:31015711-31015824+ 8038 8038 -1003 5 5080 31015442 31015824 Best 7035 7035;12731;13891 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:31015442-31015824&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.421052631579 0.478991596639 -1.49925789474 0.0267 -1.91733947368 0.418081578947 0.0184181655093 0.416580143506 33217 27586 27586;33217;38445 42.5872052632 0.6817 12.1644026316 30.4228026316 0.964687181796 1.03894526508 1639 1386 1386;1428;1639 0.0 0.817598211551 chrM:5904-7445+ pseudogene mitochondrially encoded cytochrome c oxidase I (MT-CO1) processed pseudogene (ENSG00000256984) 7038 586810 chr8:60792833-60792859- NoOverlap chr8 60792833 60792859 - 8.0087221596 9 1.0 -2.92251109415 10.9312332537 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;60792832;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A60792833-60792859-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A60792833-60792859&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0923302697571 0.347941161638 1.03957367407 61705392 61705418 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;61705391;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A60792833-60792859-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A61705392-61705418&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRPVKELNHCQVK Same 587751 chr8:60792833-60792859- 6921 6921 117 0 615 60792790 60793155 943 943;7038;18295;58454 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:60792790-60793155&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.0 6.81616666667 1.0 -6.50367777778 13.3198444444 0.357288952715 1.0313263223 4570 Best 4570 4570;12228;13553;25144 0.501933333333 0.6465 -11.8695222222 12.3714555556 0.10652209497 0.802551929799 10907 6888 6888;10907;32971;41586 0.0 0.0 ENST00000423902.6,ENST00000527900.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 7051 466286 chr1:92167093-92167140+ NoOverlap chr1 92167093 92167140 + 4.82303760946 16 0.966043907836 -3.47644992173 8.29948753119 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;92167092;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A92167093-92167140%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A92167093-92167140&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.107851612563 0.347567900576 1.03971593273 92632650 92632697 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;92632649;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A92167093-92167140%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A92632650-92632697&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CIAFIVDNFSKIIQSENFALLLQVLCLNYILYLVPSLCSDFNYVR Same 468146 chr1:92167093-92167140+ 8324 8324 -1273 0 112 92166967 92168865 134 134;7051;73484 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:92166967-92168865&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.3125 0.0 5.93968125 0.9792 -5.1758625 11.11554375 0.487796339522 1.03682425002 3225 296 296;3225;48415 10.44660625 0.6898 -12.27609375 22.7227 0.721305905909 1.06046655482 2739 966 966;2739;40536 0.0 0.0 ENST00000370378.4 UTR5 coding exon(s) Readthrough' protein-coding transcript added between BTBD8 and KIAA1107 containing 3 new coding exons; actually shows that this is really one locus, with HGNC retaining the BTBD8 symbol 7057 491704 chr12:53677141-53677539+ NoOverlap chr12 53677141 53677539 + 3.05167593813 133 0.792764240654 2.96688798451 0.084787953617 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;53677140;399;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53677141-53677539%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A53677141-53677539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.753266021628 0.347451606163 0.496511491377 54070925 54071323 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;54070924;399;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53677141-53677539%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A54070925-54071323&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSLRGRLSSPPWPRPSRRPLPAPGPRGAPAPSSSI*SDLGEGEDKSRQQLYGPGGEASRRQAHPGRR*KPPLKAHGAISRDPERRHYRNVILPG*GPEFNYPRGGISMRPIHLAGGRQRDLYGPVISHRSSICIFMALSS Same 493682 chr12:53677141-53677539+ 2885 2885 4172 92 511 53675817 53677539 760 760;1200;7057;16551;24062;35589 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:53675817-53677539&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.614035087719 0.964285714286 -1.17786842105 0.9615 -1.53689022556 0.359021804511 0.302056111598 0.525680959801 5561 2429 2429;5561;6811;18771;39125;47754 -5.55137518797 0.4509 -5.77957593985 0.22820075188 0.0665168390208 0.52932164296 15709 4274 4274;6621;14008;15709;25359;38314 0.0 0.0 ENST00000552242.5 AntiUTR5 not annotated putative regulatory region 7059 524604 chr18:54419940-54419978+ NoOverlap chr18 54419940 54419978 + 8.63968464044 13 0.712397955291 0.364607602358 8.27507703809 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;54419939;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54419940-54419978%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A54419940-54419978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.324338651855 0.347435221314 1.00107623954 51946310 51946348 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;51946309;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54419940-54419978%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A51946310-51946348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QPHFRFNANEMHYVLSGCGK Same 526040 chr18:54419940-54419978+ 7621 7621 -562 0 663 54415278 54424623 1020 1020;1399;1951;1974;2187;2640;3987;7059;26481;56311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:54415278-54424623&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.928571428571 13.6261923077 0.8412 3.50430769231 10.1218846154 0.455171565784 0.95068492257 3468 1312 1312;1532;1793;1867;1963;3255;3308;3468;3714;4481 26.1015461538 0.5451 4.37362307692 21.7279230769 0.824767454899 0.987467150984 2398 85 85;217;311;1380;1426;2121;2398;2457;2578;2838 0.0 0.0 pseudogene unitary pseudogene ENSG00000283613 7074 484365 chr11:47326449-47326478+ NoOverlap chr11 47326449 47326478 + 6.57244999409 10 0.878374914168 -4.5006999135 11.0731499076 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;47326448;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A47326449-47326478%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A47326449-47326478&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0491007338491 0.347007672335 1.04257491354 47348000 47348029 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;47347999;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A47326449-47326478%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A47348000-47348029&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGSPGQQQGLR Same 486307 chr11:47326449-47326478+ 6740 6740 334 0 491 47323975 47326737 725 725;7074;33773;69571;73021 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:47323975-47326737&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.766666666667 0.227272727273 2.19799 0.9889 -13.01723 15.21522 0.218640950609 1.04183259451 8028 Best 8028 8028;16774;35166;46166;60522 -3.74153 0.5455 -23.72863 19.9871 0.146041439863 1.01341395549 8192 1626 1626;8192;19804;26924;68134 0.0 0.0 ENST00000311027.9,ENST00000460452.5 CDSintron,NCintron pseudogene Mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) unprocessed pseudogene (ENSG00000283338) 7079 485269 chr11:67538911-67538949+ NoOverlap chr11 67538911 67538949 + 9.83503079414 13 0.594755591551 0.928122956019 8.90690783812 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;67538910;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67538911-67538949%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A67538911-67538949&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.306585949341 0.346814408993 1.00888809355 67306382 67306420 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;67306381;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67538911-67538949%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A67306382-67306420&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QQRPLVDTVNDGAEDHR Same 487225 chr11:67538911-67538949+ 7814 7814 -735 0 418 67538911 67540581 590 590;7079;8327;9330;15109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:67538911-67540581&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.615384615385 0.577777777778 17.8547538462 0.9299 0.410007692308 17.4447461538 0.741912938024 1.00662247881 1917 51 51;1631;1897;1917;5012 20.7736692308 0.3571 -0.353338461538 21.1270076923 0.514233165101 0.998140761113 3475 118 118;3030;3177;3475;4027 0.295901236004 chr11:67585138-67585241+ 0.347939045841 chr11:67585138-67585241+ pseudogene glutathione S-transferase pi 1 (GSTP1) unprocessed pseudogene (ENSG00000283257) 7083 546496 chr21:16534450-16534743+ NoOverlap chr21 16534450 16534743 + 2.09155202758 98 0.896633205812 0.0547887722448 2.03676325533 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;16534449;294;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16534450-16534743%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A16534450-16534743&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.487259782184 0.346662410921 0.688632700014 17906770 17907063 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;17906769;294;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16534450-16534743%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A17906770-17907063&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WAEKVGSLPGRRFHDSQPPKVMRFSANSMKSGLNFGSKRDNSCLRSISRMVDGSALYIWQRIM*PYD*DFVMVPTETWKAATVLTFFFFSNMAQKMVDLNT Same 547912 chr21:16534450-16534743+ 5475 5475 1608 34 5108 16534450 16539161 Best 7083 7083;22298;38303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:16534450-16539161&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.469387755102 0.439743589744 -2.15458469388 0.9989 -2.86640714286 0.71182244898 0.14725959658 0.418363467037 11748 8805 8805;11748;56400 -10.7820938776 0.8346 -11.1379377551 0.355843877551 0.0550627281321 0.503833186986 17720 15150 15150;17720;61409 0.0 0.0 ENST00000400178.6 NCintron not annotated ancient miRNA 7084 520078 chr17:6637185-6637253- NoOverlap chr17 6637185 6637253 - 5.7907913256 23 0.65777397408 1.18648253316 4.60430879243 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;6637184;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A6637185-6637253-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A6637185-6637253&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.361867865116 0.34665954276 0.836726223707 6540505 6540573 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;6540504;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A6637185-6637253-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A6540505-6540573&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPLPLGVLAAVGAPMAGRAPAAVWVTGSSGAEADVGVSGLTVLR None NA NA 0 196 6637185 6640241 237 237;7084;40012;65363 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:6637185-6640241&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.419878296146 8.59219130435 0.9923 -0.193826086957 8.7860173913 0.748987863313 0.996992604019 1869 155 155;1869;2583;20653 3.96074782609 0.5188 -5.16389130435 9.12463913043 0.322749372028 0.790366103672 4420 975 975;4420;5195;62339 0.0 0.114285802833 chr6:43206321-43206510+ ENST00000361413.7,ENST00000570455.1 UTR5intron,NCintron not annotated putative regulatory region 7085 594612 chrX:12720749-12720784+ NoOverlap chrX 12720749 12720784 + 6.71015006304 12 0.867994201572 -2.7628415823 9.47299164534 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;12720748;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A12720749-12720784%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A12720749-12720784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.182667529211 0.34665551469 1.04394530177 12738868 12738903 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;12738867;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A12720749-12720784%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A12738868-12738903&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPPSQKALRHSSSILSGSVDLETFR Same 595252 chrX:12720749-12720784+ 6837 6837 248 0 228 12717136 12721843 286 286;461;7085;22580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:12717136-12721843&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.0 6.11916666667 0.9585 -4.04405833333 10.163225 0.313760231692 0.984119890037 5318 475 475;724;3972;5318 22.1849083333 0.8996 1.26329166667 20.9216166667 0.846085661243 0.983283016904 2328 309 309;1117;2159;2328 0.0 0.0 ENST00000380682.5 UTR3 coding exon(s) FRMPD4 3' extended final exon 7100 486197 chr11:117355502-117355531+ NoOverlap chr11 117355502 117355531 + 11.1938998699 10 0.836949721523 0.431890010834 10.7620098591 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;117355501;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117355502-117355531%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A117355502-117355531&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.327382508121 0.346145414636 1.01044335679 117226218 117226247 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;117226217;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117355502-117355531%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A117226218-117226247&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSPTGPGGDKGQSPIPMSSPEEEPSLSSCSSGHMLPAR Same 488156 chr11:117355502-117355531+ 7091 7091 9 0 347 117354932 117356374 476 476;2729;7100;15490;19164;22431 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:117354932-117356374&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.0 14.48093 1.0 5.16845 9.31248 0.641952049853 0.868500404705 2341 650 650;1071;2341;2829;3370;5930 18.14241 0.4803 4.2549 13.88751 0.452078601288 0.805284584595 3723 1307 1307;2765;2996;3723;3958;5242 0.0 0.0 ENST00000278935.7 CDSintron coding exon(s) CEP164 cassette exon 7119 529199 chr19:53211973-53212077+ NoOverlap chr19 53211973 53212077 + 2.09201999434 35 0.358250008174 -7.68076574888 9.77278574322 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;53211972;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A53211973-53212077%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A53211973-53212077&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0025083083105 0.345689544529 1.04339752872 53715226 53715330 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;53715225;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A53211973-53212077%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A53715226-53715330&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IHTGEKPYKCSDCGKTFNYRSHLTRHQRIHTGQKPYK Same 530658 chr19:53211973-53212077+ 6301 6301 818 0 5132 53204022 53212191 Best 7119 7119;23010;34818;59931 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:53204022-53212191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.409523809524 0.228260869565 7.98906 0.5026 -9.10574571429 17.0948057143 0.680766217146 0.944574678723 2158 1567 1567;2158;4633;8326 48.0455885714 0.827 -7.91806857143 55.9636571429 1.01362589361 0.969246876414 880 332 332;671;880;1494 0.451774878674 chr19:53108377-53109908- 0.458206836633 chr7:64706324-64708656+ pseudogene zinc finger protein pseudogene (ENSG00000269001) 7126 497295 chr12:121053768-121053842- NoOverlap chr12 121053768 121053842 - 4.09120380402 25 0.650149080644 -2.16096798658 6.2521717906 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;121053767;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121053768-121053842-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A121053768-121053842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.165051427157 0.345536915765 0.994742368186 121491571 121491645 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;121491570;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121053768-121053842-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A121491571-121491645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APDSLSLQVQSRKSSGVIWMDKLPAFDALGK Same 499307 chr12:121053768-121053842- 7764 7764 -638 0 1146 121053768 121059655 1742 1742;3390;7126;9195;12027;15420;18584 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:121053768-121059655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586666666667 0.3125 5.20588 0.591 -5.61548 10.82136 0.386961875374 1.06908016545 4174 2783 2783;4174;4538;6046;10102;15430;23561 11.585856 0.3163 -7.79518 19.381036 0.684737859103 1.04846270814 2866 Best 2866 2866;2878;4226;4741;5525;5554;8163 0.0 0.310491935333 chr12:121033461-121033743- pseudogene unitary pseudogene, orthlog of mouse 2'-5' oligoadenylate synthetase-like 2 (Oasl2) (ENSG00000283542) 7127 505809 chr14:105644497-105644790- NoOverlap chr14 105644497 105644790 - 3.4585254907 98 0.28739231101 -1.03006629958 4.48859179028 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105644496;294;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105644497-105644790-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105644497-105644790&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.17811376063 0.345527237833 0.959855719372 106110834 106111127 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106110833;294;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105644497-105644790-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106110834-106111127&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHGTTSLAASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSNFGTQTYTCNVDHKPSNTKVDKTVGERPAQGGR None NA NA 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.636054421769 0.56 8.02082040816 0.5538 -2.22638061224 10.2472010204 1.0253144843 1.06526033841 521 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 8.85724897959 0.4499 -7.56596632653 16.4232153061 0.818067957328 1.05436706662 2418 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.101583581553 chr5:141344034-141346523+ ENST00000390545.2 NC immunoglobulin segment overlaps an immunoglobulin region 7128 571674 chr6:44217694-44217723+ NoOverlap chr6 44217694 44217723 + 6.56058016419 10 0.859145494774 -4.68111026287 11.2416904271 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;44217693;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A44217694-44217723%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A44217694-44217723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0473377032859 0.345523434595 1.04077272093 44185431 44185460 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;44185430;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A44217694-44217723%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A44185431-44185460&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LERRERLGPQK Same 572701 chr6:44217694-44217723+ 6795 6795 333 0 567 44217472 44223932 864 864;7128;57231 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:44217472-44223932&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.0 6.05355 0.988 -8.73793 14.79148 0.365573598272 1.03727285556 4456 1251 1251;4456;26350 5.28104 0.3946 -9.73495 15.01599 0.162354753824 0.892993294968 7453 128 128;7453;43691 0.0 0.0 ENST00000573382.2 NC protein-coding gene protein-coding gene ENSG00000262179 7145 529825 chr19:7019578-7019637- NoOverlap chr19 7019578 7019637 - 4.90567498144 20 0.504272526131 -4.40619505644 9.31187003788 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;7019577;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A7019578-7019637-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A7019578-7019637&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0720787684036 0.345198191603 1.05596058589 7019589 7019648 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;7019588;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A7019578-7019637-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A7019589-7019648&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SALPMRLTSCIFRRPVTRIRSHPDNQVR Same 531289 chr19:7019578-7019637- 7129 7129 16 0 5147 7019464 7019637 Best 7145 7145;9913 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:7019464-7019637&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.375 3.81712 0.2183 -0.85244 4.66956 0.0431141075468 0.72119956002 24731 14920 14920;24731 3.81712 0.0682 -0.85244 4.66956 0.0140838546762 0.587455900768 29106 12688 12688;29106 0.651796242489 chr19:7032313-7032879+ 0.652125128617 chr19:7032313-7032879+ ENST00000358469.4 NC protein-coding gene protein coding gene ENSG00000196589 7155 557800 chr3:184500338-184500370- NoOverlap chr3 184500338 184500370 - 7.73685453155 11 0.897901884489 -1.90740918029 9.64426371184 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;184500337;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184500338-184500370-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A184500338-184500370&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.218726137071 0.345028210392 1.0379444886 184218126 184218158 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;184218125;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184500338-184500370-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A184218126-184218158&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMGTLEGHLLPAMFFLLYSLYYMVLVSLALLQEQR Same 558771 chr3:184500338-184500370- 6771 6771 384 0 22 184499610 184500370 22 22;541;811;1939;2622;7155;17966 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:184499610-184500370&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.275 15.3579818182 0.9801 1.46781818182 13.8901636364 0.725908006801 1.01120921776 1985 35 35;97;1016;1294;1807;1985;2257 25.1939363636 0.4982 3.67388181818 21.5200545455 0.695670223348 0.974476450685 2827 17 17;96;2057;2581;2827;2852;3634 0.0 0.0 ENST00000444495.1 AntiCDSintron pseudogene transmembrane epididymal protein 1 (TEDDM1) pseudogene (ENSG00000283625) 7171 579711 chr7:142796384-142796410+ NoOverlap chr7 142796384 142796410 + 20.04141087 9 0.744701304646 5.30208860503 14.739322265 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142796383;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142796384-142796410%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142796384-142796410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.339185140609 0.344558333232 0.847862326017 142494068 142494094 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142494067;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142796384-142796410%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142494068-142494094&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGEGEGILGSPFPLCSYNEQFFGPGTRLTVLGK None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 0.9 37.8256333333 0.9146 15.9214222222 21.9042111111 0.45603478736 0.831184552134 3459 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 46.2154666667 0.4518 19.7291333333 26.4863333333 0.526128513933 0.915842081371 3439 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.0 ENST00000390412.1,ENST00000610847.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 7208 520815 chr17:29124548-29124580- NoOverlap chr17 29124548 29124580 - 12.9102365971 11 0.890376412327 9.84678184444 3.06345475262 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;29124547;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29124548-29124580-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A29124548-29124580&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.440455722058 0.343530498552 0.380561176626 27451566 27451598 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;27451565;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29124548-29124580-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A27451566-27451598&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDSEAASHAHSQVGCSPPTQEPSAPSSDHLAPLACTWAGVCARASCWSVRPLSPPGSHPVSGR Same 522233 chr17:29124548-29124580- 7294 7294 -86 0 147 29124548 29133836 176 176;1108;2567;6559;7208;9587 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:29124548-29133836&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.727272727273 0.471428571429 9.2312 0.9994 3.11740909091 6.11379090909 0.384299977333 0.7202800857 4205 498 498;1507;2077;2179;3115;4205 26.5141818182 0.7111 14.4421272727 12.0720545455 0.779734040402 0.711585259321 2550 450 450;1147;2200;2400;2550;3310 0.0 0.0832252743959 chr4:3444623-3444733+ ENST00000527372.5,ENST00000528322.6 CDSintron,NCintron coding exon(s) MYO18A alternative first exon plus four cassette exons 7259 480353 chr10:27397748-27397846- NoOverlap chr10 27397748 27397846 - 3.28183026792 33 0.785829454999 -1.39750613572 4.67933640364 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;27397747;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A27397748-27397846-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A27397748-27397846&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.24952343853 0.342434349573 0.918405062366 27686677 27686775 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;27686676;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A27397748-27397846-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A27686677-27686775&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AYIFRTFFKIMFLVMIFGAAHGLIFIPVFLTFFGR Same 482262 chr10:27397748-27397846- 7359 7359 -100 0 436 27397748 27398290 622 622;7259 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:27397748-27398290&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.30303030303 0.0 1.49084242424 0.5588 -1.07986060606 2.5707030303 0.0185797229203 0.625791035544 33163 3072 3072;33163 21.8210969697 0.7468 2.05292727273 19.768169697 1.04481672088 1.03700439012 406 Best 406 406;668 0.0 0.0 pseudogene PTCHD3 (ENSG00000182077) converted from coding to a polymorphic pseudogene based on a truncation of the CDS by rs250532 ENSG00000182077 7260 546502 chr21:16588518-16588619+ NoOverlap chr21 16588518 16588619 + 5.44716171219 34 0.844207630409 5.09366776663 0.353493945564 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;16588517;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16588518-16588619%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A16588518-16588619&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.743095163653 0.342413874078 0.381928636345 17960838 17960939 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;17960837;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16588518-16588619%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A17960838-17960939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWMLDCELMLMMSAVKIPAAATPCSQKRSESASDALPR Same 547918 chr21:16588518-16588619+ 7652 7652 -392 0 5231 16588460 16588760 Best 7260 7260;14761;22254;32313 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:16588460-16588760&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.529411764706 0.56275862069 5.25685882353 0.9654 3.22405294118 2.03280588235 0.404619719596 0.592036240331 3953 Best 3953 3953;23524;44551;65667 -0.164105882353 0.6763 -0.213538235294 0.0494323529412 0.0736229458137 0.462966202865 14629 Best 14629 14629;66878;69840;73603 0.0 0.0 ENST00000400178.6 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 7261 468429 chr1:200920454-200920483+ NoOverlap chr1 200920454 200920483 + 13.338890028 10 0.757000076295 2.83836026192 10.5005297661 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;200920453;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A200920454-200920483%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A200920454-200920483&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.358888969536 0.342411298826 0.958050028526 200889582 200889611 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;200889581;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A200920454-200920483%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A200889582-200889611&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPQLHPFSGLRQSEREAYEFIVDFLEEEHMVR Same 470298 chr1:200920454-200920483+ 8065 8065 -804 0 74 200920454 200929951 83 83;3374;7261 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:200920454-200929951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.625 21.80586 0.9639 1.10698 20.69888 0.777476505173 0.981106167349 1766 81 81;1766;1958 21.68893 0.3624 2.14264 19.54629 0.402709089664 0.943925628271 3945 174 174;3848;3945 0.0 0.0 pseudogene unitary pseudogene ENSG00000233217 7278 512294 chr16:72427371-72427454+ NoOverlap chr16 72427371 72427454 + 5.17973927741 28 0.914466097723 3.41277858615 1.76696069126 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72427370;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427371-72427454%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72427371-72427454&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.599107523751 0.341909243 0.528568708906 72461270 72461353 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72461269;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427371-72427454%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72461270-72461353&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSGNGWYLRCLRCCGS*KVFCWHRALSQGQALETK Same 513938 chr16:72427371-72427454+ 7392 7392 -114 13 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.607142857143 0.707070707071 -2.07341071429 0.9974 -2.96154285714 0.888132142857 -0.0344534927088 0.418414972839 63326 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -11.9134392857 0.7019 -9.44975714286 -2.46368214286 -0.0583581606547 0.301494610225 73318 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000564508.2,ENST00000561611.2 NC,AntiNC not annotated potentially spurious 7314 508733 chr15:45200411-45200485- NoOverlap chr15 45200411 45200485 - 4.71867595673 25 0.722280918593 -0.0478161096573 4.76649206638 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;45200410;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45200411-45200485-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A45200411-45200485&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.332223527731 0.341312919362 0.873828862705 45492609 45492683 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;45492608;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45200411-45200485-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A45492609-45492683&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPVSLVARRDRIVVSTLRCGRSNLGSNPSHGIVR Same 510457 chr15:45200411-45200485- 7559 7559 -245 0 1111 45198578 45201222 1685 1685;3658;6770;7314;14365;15805;20741;57385 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:45198578-45201222&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.56 1.53409090909 0.787728 0.9953 0.0957 0.692028 0.055331947362 0.400710851542 22093 5595 5595;8787;14727;17218;22093;24393;42532;65917 0.379144 0.3504 0.095728 0.283416 0.0131330041879 0.432513651483 29490 8460 8460;15084;16682;28123;29490;30928;42026;53935 0.0 0.0 ENST00000563103.1,ENST00000290894.12 NC,UTR5intron not annotated 3 tRNAs 7315 519570 chr17:81181263-81181340+ NoOverlap chr17 81181263 81181340 + 3.18145388823 26 0.536374573774 -4.65974234847 7.8411962367 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;81181262;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A81181263-81181340%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A81181263-81181340&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0197228461056 0.34130733018 1.05971158226 79155063 79155140 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;79155062;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A81181263-81181340%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A79155063-79155140&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MALAMGTSLSDKDIELLPTDMRHHGTACPRPARPPARPAPLWSGDLIPFLGLMGPGHQDLR Same 520974 chr17:81181263-81181340+ 7669 7669 -354 0 5269 81181263 81182071 Best 7315 7315;9975;18349 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:81181263-81182071&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.576923076923 0.312 4.93660769231 0.709 -8.44456538462 13.3811730769 0.58894685855 1.0666584954 2603 2180 2180;2603;3712 3.14041538462 0.4996 -14.3396 17.4800153846 0.585508881208 1.05157876435 3208 2288 2288;3208;3277 0.0 0.054183647619 chr19:46608197-46608340+ ENST00000571031.1 NC protein-coding gene protein coding gene ENSG00000225180 7318 531956 chr19:50808166-50808204- NoOverlap chr19 50808166 50808204 - 6.72296154499 13 0.665091466099 -4.41376156761 11.1367231126 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;50808165;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A50808166-50808204-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A50808166-50808204&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.143385470027 0.341258176601 1.0403285353 51311423 51311461 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;51311422;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A50808166-50808204-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A51311423-51311461&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ACNWAWGQDCDWDWVGELCVSSPVPSSSPQGFLSYLNYMYFWSILALQPIR Same 533432 chr19:50808166-50808204- 7704 7704 -386 0 86 50808166 50808759 99 99;7318 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:50808166-50808759&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.435897435897 0.557142857143 11.6618615385 0.9616 -5.88530769231 17.5471692308 0.673404272617 1.00733589659 2193 77 77;2193 12.5495076923 0.3849 -8.42233076923 20.9718384615 0.44966848767 1.02426978413 3733 1219 1219;3733 0.0 0.0294413943998 chr13:113732884-113733085+ pseudogene unitary pseudogene ENSG00000284711 7326 500767 chr14:22547517-22547543+ NoOverlap chr14 22547517 22547543 + 14.7653221289 9 0.89173893509 -5.80064434475 20.5659664737 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22547516;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22547517-22547543%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22547517-22547543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.351015893143 0.341161785754 0.993387525243 23016458 23016484 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23016457;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22547517-22547543%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23016458-23016484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSCPTDIQNPDPAVYQLR None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.385714285714 21.6685222222 0.9987 -8.60603333333 30.2745555556 0.584201362744 0.963779254657 2632 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 21.2684111111 0.384 -11.9369333333 33.2053444444 0.396910459853 1.04050572862 3979 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000611116.1 NC immunoglobulin segment overlaps an immunoglobulin region 7328 486540 chr11:125950960-125951061+ NoOverlap chr11 125950960 125951061 + 3.49521175991 34 0.646167517133 -1.39108231488 4.88629407479 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125950959;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125950960-125951061%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125950960-125951061&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.182252641451 0.341140566371 0.941237746023 125820855 125820956 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125820854;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125950960-125951061%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125820855-125820956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPCLGLGAAGHWQWSLLQPHPLPHPDPPEGQPSCAVHPSPEAVTLLCAWPGGLPPAQLQWEGPQGPGPTAPSNVTWSHAAAQLPSGSVFTCTGQHPALAPPALCTVMLCEWTQETPGL Same 488502 chr11:125950960-125951061+ 8061 8061 -733 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.696078431373 0.162679425837 4.05644411765 0.923 -6.69814411765 10.7545882353 0.701558116982 1.09157098912 2089 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 7.15316764706 0.6071 -10.7129411765 17.8661088235 0.81785308988 1.06240583248 2419 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0 ENST00000529072.1 NC protein-coding gene protein-coding gene ENSG00000283703 7360 572945 chr6:138382770-138382799+ NoOverlap chr6 138382770 138382799 + 14.722039941 10 0.805664148928 10.0693600059 4.6526799351 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;138382769;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A138382770-138382799%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A138382770-138382799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.394276627876 0.340168044609 0.469572267352 138703907 138703936 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;138703906;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A138382770-138382799%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A138703907-138703936&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPPQGQVFSIDLPEHPPAGEVTDLLPGLAWSSEDFPYSPLPPEATLPSQCLPPSYEEATR Same 573972 chr6:138382770-138382799+ 7437 7437 -77 0 176 138378073 138382799 212 212;795;7360 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:138378073-138382799&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.833333333333 21.7597 0.9612 15.85881 5.90089 0.607280556267 0.516540190356 2507 110 110;1225;2507 40.8154 0.5963 21.98215 18.83325 0.798807765209 0.817041620598 2478 598 598;2101;2478 0.0 0.0 ENST00000573100.1 NC protein-coding gene protein-coding gene ENSG00000262543 7365 496465 chr12:95407918-95407956- NoOverlap chr12 95407918 95407956 - 11.2383230833 13 0.785090761836 9.10921524121 2.12910784208 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;95407917;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95407918-95407956-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A95407918-95407956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.489407551163 0.340072868569 0.348419685336 95801694 95801732 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;95801693;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95407918-95407956-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A95801694-95801732&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADPNMKKFHYALVDGSSLT Same 498467 chr12:95407918-95407956- 7514 7514 -149 0 1078 95405372 95408124 1638 1638;2059;7365;33136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:95405372-95408124&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.461538461538 0.4875 10.4225461538 0.8794 9.60391538462 0.818630769231 0.181096110167 0.284625226347 9658 2635 2635;6398;9658;12683 20.7852461538 0.5599 13.2169692308 7.56827692308 0.512903289874 0.593762045621 3484 2962 2962;3484;3887;4565 0.0 0.0 ENST00000550470.1 NC pseudogene unitary pseudogene ENSG00000257943 7413 586880 chr8:64377163-64377261- NoOverlap chr8 64377163 64377261 - 4.31563644156 33 0.829791159478 1.66763630961 2.64800013195 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;64377162;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64377163-64377261-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A64377163-64377261&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.509758229754 0.339051180566 0.68662542912 65289720 65289818 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;65289719;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64377163-64377261-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A65289720-65289818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLPSAQEDYTGC*RHQSDRCWLPKS*AARCVLETKEPQK Same 587821 chr8:64377163-64377261- 7411 7411 2 20 5341 64368369 64380096 Best 7413 7413;23157;28942;34300;70170;70979;72036 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:64368369-64380096&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.52380952381 -1.20061212121 0.9984 -3.56867272727 2.36806060606 0.0477019781367 0.582837287266 23665 9455 9455;23665;25300;33558;51744;54451;62241 -11.2128272727 0.8642 -15.1920666667 3.97923939394 -0.0210089366474 0.579306327529 48925 29002 29002;44391;44674;45945;47356;48925;63213 0.0 0.0 ENST00000520799.5 AntiNCintron not annotated potentially spurious 7419 514857 chr16:72425861-72425953- NoOverlap chr16 72425861 72425953 - 4.7794999336 31 0.840483661771 2.69919033204 2.08030960156 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72425860;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425861-72425953-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72425861-72425953&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.574785985764 0.338920627617 0.595885605794 72459760 72459852 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72459759;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425861-72425953-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72459760-72459852&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPLALPHCLARIQGPVSYTRCCYHTKLWRCP*MDGTVPTLLPSALAAFFFSPSLPFFFSSSR Same 516507 chr16:72425861-72425953- 7435 7435 -16 5 5346 72425674 72429311 Best 7419 7419;20359;21636;23849;24685;27931;29808;67419;67757;69819;71722 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425674-72429311&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.591397849462 0.744 1.84214193548 0.9994 -0.154574193548 1.99671612903 0.190968269926 0.562536185112 9185 Best 9185 9185;30001;30975;34321;44342;61179;63064;63782;69032;69981;73105 -3.37432258065 0.7811 -6.75213870968 3.37781612903 0.070424776892 0.58780890205 15117 Best 15117 15117;16880;44158;45925;52647;58331;62919;63425;64625;67483;67573 0.0 0.0 ENST00000561611.2,ENST00000624829.3,ENST00000564508.2 NC,NCintron,AntiNC not annotated potentially spurious 7458 561781 chr4:68050306-68050392- NoOverlap chr4 68050306 68050392 - 4.90812755145 29 0.346156699631 -3.31225514797 8.22038269942 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;68050305;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A68050306-68050392-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A68050306-68050392&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0471068087123 0.338055833504 1.06156934882 68916024 68916110 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;68916023;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A68050306-68050392-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A68916024-68916110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPEVTQGISPTSAVILFT*QKLAPISIMF Same 562773 chr4:68050306-68050392- 7715 7715 -257 10 1383 68049815 68050392 2071 2071;7458;36754 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:68049815-68050392&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.379310344828 0.0 -2.04913793103 0.0919 -2.02857586207 -0.0205620689655 0.0129298453038 0.343688560524 35553 27671 27671;35553;46087 25.0050172414 0.7065 -11.2229793103 36.2279965517 1.05975807322 0.953570077315 227 Best 227 227;1891;2294 0.0 0.836131491694 chrM:4470-5511+ ENST00000500538.6 AntiNCintron pseudogene mitochondrial pseudogene region (ENSG00000283156) 7460 564601 chr5:81087178-81087219+ NoOverlap chr5 81087178 81087219 + 7.82129294957 14 0.887466893372 2.00540702098 5.81588592859 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;81087177;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A81087178-81087219%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A81087178-81087219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.400114582962 0.338002787462 0.852094566882 80382997 80383038 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;80382996;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A81087178-81087219%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A80382997-80383038&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLHSDWTLLLSGPDILCSSK Same 565589 chr5:81087178-81087219+ 7090 7090 370 0 93 81087178 81087420 110 110;7460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:81087178-81087420&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.7875 8.68142857143 0.9993 3.28726428571 5.39416428571 0.429707330987 0.702883990533 3706 231 231;3706 2.72070714286 0.5239 -2.52434285714 5.24505 0.0893503705962 0.56545536379 12623 2330 2330;12623 0.0 0.0 ENST00000502677.1,ENST00000265080.8,ENST00000503795.1 NC,CDSintron,NCintron coding exon(s) RASGRF2 alternative final coding exon 7464 503431 chr14:23094729-23094782- NoOverlap chr14 23094729 23094782 - 5.78259448914 18 0.878676364623 0.211577773094 5.57101671605 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23094728;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23094729-23094782-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23094729-23094782&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.370243125887 0.337897053479 0.889005262924 23563938 23563991 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23563937;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23094729-23094782-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23563938-23563991&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RQQREPKWEGVHYSPGVS Same 505270 chr14:23094729-23094782- 7296 7296 168 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.568421052632 -3.77897777778 0.9996 -6.27322222222 2.49424444444 -0.0508422421721 0.498625860677 71187 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 -6.75552222222 0.3963 -10.3481777778 3.59265555556 -0.0219659732876 0.511645572207 49743 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 ENST00000262710.5,ENST00000319074.5 CDSintron,AntiUTR5 protein-coding gene protein-coding gene ENSG00000283654 7491 591034 chr9:135614297-135614353+ NoOverlap chr9 135614297 135614353 + 5.78218402988 19 0.490398461248 -3.27912627396 9.06131030384 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;135614296;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A135614297-135614353%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A135614297-135614353&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.104345721562 0.337387393863 1.05489574578 138506143 138506199 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;138506142;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A135614297-135614353%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A138506143-138506199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPLLLLALGLGLAGAQKALEEVPVQPGFNAQKVR Same 591988 chr9:135614297-135614353+ 7590 7590 -99 0 846 135614297 135617015 1311 1311;7491;10481;14963 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:135614297-135617015&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.59649122807 0.610714285714 10.5055315789 0.6382 1.82225263158 8.68327894737 0.412564807057 0.959396666442 3873 1303 1303;1990;3552;3873 0.242857894737 0.376 -8.69618421053 8.93904210526 0.132572665871 0.757462935539 8972 2809 2809;3460;7027;8972 0.0 0.18117030035 chr15:43521324-43529508+ ENST00000430816.1 NC protein-coding gene protein coding gene ENSG00000236543 7495 519386 chr17:78051335-78051364+ NoOverlap chr17 78051335 78051364 + 9.62940012515 10 0.800999465934 -2.14108985066 11.7704899758 ENST00000301624.8,ENST00000335749.4,ENST00000588061.5,ENST00000588847.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;78051334;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A78051335-78051364%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A78051335-78051364&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.254980671405 0.337248363615 1.02968261069 76047416 76047445 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;76047415;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A78051335-78051364%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A76047416-76047445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVPRPIPPPPPPLPR Same 520791 chr17:78051335-78051364+ 7775 7775 -280 0 401 78048844 78051364 563 563;7495 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:78048844-78051364&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.566666666667 0.0 7.58571 0.7407 1.21215 6.37356 0.0874307208022 0.738375246233 17345 767 767;17345 -10.66879 0.7447 -10.77401 0.10522 -0.039585274724 0.306099970851 64918 541 541;64918 0.0 0.162817063142 chr16:24789232-24791817+ ENST00000301624.8,ENST00000591851.5,ENST00000585438.1 CDS,NC,UTR5intron not annotated potentially spurious 7504 554450 chr3:187744856-187744900+ NoOverlap chr3 187744856 187744900 + 7.59071316719 15 0.802724244043 2.1632000049 5.4275131623 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;187744855;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187744856-187744900%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A187744856-187744900&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.406142357332 0.337060192053 0.828484876216 187462644 187462688 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;187462643;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187744856-187744900%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A187462644-187462688&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NTAARIQRDHKPYASSSR Same 555400 chr3:187744856-187744900+ 7249 7249 255 0 576 187739883 187745776 875 875;1104;7504;8158;11541;34107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:187739883-187745776&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 1.0 -0.2276 0.945 -3.29476 3.06716 -0.00651781295183 0.534142224898 44991 3665 3665;8409;10256;24508;44991;56743 -3.43246666667 0.3564 -9.22526666667 5.7928 0.00429284921898 0.592624720178 33269 5778 5778;12942;12969;14939;33269;59538 0.0 0.0 ENST00000450760.1,ENST00000406870.6,ENST00000470319.1 NCintron,AntiUTR5intron,AntiNCintron under investigation Finds a putative 38aa CDS antisense to the 5' UTR of BCL6. However, it is difficult to interpret the accuracy of the PhyloCSF signal here as the region has deep conservation over a wider region, presumptively due to being the promoter of BCL6, and the 38aa CDS has very low complexity. There is also very little transcriptional support for the locus in human or mouse. 7506 537081 chr2:230991092-230991124+ NoOverlap chr2 230991092 230991124 + 9.19471805746 11 0.722935003503 -2.61105442047 11.8057724779 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;230991091;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230991092-230991124%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A230991092-230991124&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.258207645133 0.337010390022 1.03185036269 231855807 231855839 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;231855806;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230991092-230991124%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A231855807-231855839&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSLMDRETQTDGEGSAR Same 538451 chr2:230991092-230991124+ 8288 8288 -782 0 389 230990378 230991124 544 544;1686;3814;7506;61923 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:230990378-230991124&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.375 15.2760727273 0.8928 -6.64603636364 21.9221090909 0.545478490562 0.965243864297 2832 581 581;2118;2325;2832;27472 13.1879636364 0.3787 -6.05613636364 19.2441 0.361366751007 0.980775972133 4170 3158 3158;3262;3882;4170;35218 0.0 0.0 ENST00000414876.5 AntiNCintron coding exon(s) SPATA3 alternative first exon 7512 531763 chr19:49019641-49019682- NoOverlap chr19 49019641 49019682 - 5.7874785534 14 0.678706034943 -4.49555021631 10.2830287697 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49019640;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49019641-49019682-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49019641-49019682&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.105367217892 0.336880786454 1.04908885236 49522898 49522939 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49522897;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49019641-49019682-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49522898-49522939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APEYFGPQPPQLADHHRGGPSQVSGWKPAPAR Same 533238 chr19:49019641-49019682- 7844 7844 -332 0 33 49017965 49020515 34 34;193;1195;1825;2425;7512;24256 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49017965-49020515&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.673796791444 7.46032857143 0.9578 -3.58984285714 11.0501714286 0.46173160812 1.0206725736 3404 18 18;246;307;1538;2029;2679;3404 6.77605714286 0.4227 -4.52983571429 11.3058928571 0.244845552435 0.799780399113 5297 76 76;2096;2562;2564;4203;4229;5297 0.0 0.238526677795 chr11:6600669-6600775- protein-coding gene protein-coding gene ENSG00000268655 7537 483262 chr11:1105536-1105601+ NoOverlap chr11 1105536 1105601 + 7.31801372766 22 0.512199588006 2.88110435551 4.43690937216 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1105535;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1105536-1105601%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1105536-1105601&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.303658392256 0.336336670601 0.800980238546 1099444 1099509 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1099443;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1105536-1105601%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1099444-1099509&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QCPPAPSSSQQNNTVLVEGCFCPEGTMNYAPGFDVCVK Same 485192 chr11:1105536-1105601+ 8100 8100 -563 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575757575758 0.36974789916 22.6494863636 0.9041 7.13485909091 15.5146272727 0.92247918938 1.0306212617 1223 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 33.5546318182 0.8706 11.3069818182 22.24765 1.04213669499 1.01666115698 443 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.128083402265 chr11:1196617-1196720+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 7541 534542 chr2:104431892-104431966+ NoOverlap chr2 104431892 104431966 + 4.1392160666 25 0.931640802625 -0.936784026623 5.07600009322 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;104431891;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A104431892-104431966%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A104431892-104431966&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.314140318901 0.336301243858 0.905496281344 105048350 105048424 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;105048349;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A104431892-104431966%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A105048350-105048424&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLQSRYYKMLSSFPNCLGEWREAGDCYSVSSLLFL Same 535894 chr2:104431892-104431966+ 8087 8087 -546 0 4171 104430374 104434436 5767 5767;7541;18142;33869;59911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:104430374-104434436&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.255102040816 1.351416 0.9943 -2.087988 3.439404 0.165920821292 0.652479140279 10532 9209 9209;10532;13016;14084;50022 -4.020796 0.7789 -5.11626 1.095464 0.0048087679778 0.459264308092 33042 9820 9820;22956;28260;33042;50064 0.0 0.0 not annotated potentially spurious 7543 500744 chr14:22482310-22482336+ NoOverlap chr14 22482310 22482336 + 12.4754333364 9 0.892903707095 0.583588891559 11.8918444448 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22482309;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22482310-22482336%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22482310-22482336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.307316082492 0.33625106525 0.997442898823 22951299 22951325 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22951298;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22482310-22482336%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22951299-22951325&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVFGQGTRLTINPSK None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.0 12.4733111111 0.9477 6.70244444444 5.77086666667 0.334463080912 0.634654808752 4937 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 16.0644444444 0.4074 8.12693333333 7.93751111111 0.208244016003 0.584475897939 6031 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390484.1,ENST00000611204.4,ENST00000514473.2 NC,NCintron,AntiNCintron immunoglobulin segment overlaps an immunoglobulin region 7557 500762 chr14:22531965-22531991+ NoOverlap chr14 22531965 22531991 + 12.4079224401 9 0.947798886091 1.75668899218 10.6512334479 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22531964;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22531965-22531991%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22531965-22531991&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.308475815112 0.33591300468 0.976007683938 23000915 23000941 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23000914;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22531965-22531991%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23000915-23000941&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIFGSGTRLLVRPGK None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.409090909091 12.0248555556 0.9823 2.04082222222 9.98403333333 0.488469097822 0.917485699081 3219 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 14.1148222222 0.3789 2.1867 11.9281222222 0.214562966903 0.746828167316 5887 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390525.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 7572 548430 chr22:30969223-30969282+ NoOverlap chr22 30969223 30969282 + 7.20750489533 20 0.848678568704 5.99381506443 1.2136898309 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30969222;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969223-30969282%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30969223-30969282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.616479124464 0.335723277123 0.370367081072 31365209 31365268 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31365208;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969223-30969282%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31365209-31365268&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSSCFPDPLRHLKKQYRGRAERRSRDGSCGADR Same 549797 chr22:30969223-30969282+ 7585 7585 -13 0 647 30968833 30969812 994 994;1622;7572;73310 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968833-30969812&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.05 1.598005 0.8969 -0.852895 2.4509 0.0537710495312 0.524465814793 22372 1582 1582;6148;22372;52363 1.31659 0.3134 -2.204865 3.521455 0.0402044478112 0.539498796192 20994 4480 4480;8146;20994;30822 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 7578 561540 chr4:41873311-41873361- NoOverlap chr4 41873311 41873361 - 7.48731191018 17 0.93620202945 4.70254686299 2.78476504719 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41873310;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41873311-41873361-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41873311-41873361&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.516161830635 0.335539002209 0.53853498505 41875328 41875378 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41875327;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41873311-41873361-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41875328-41875378&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLLVQEEPGFVAMCGKYFDVLPVRTCEQG Same 562531 chr4:41873311-41873361- 7746 7746 -168 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.490196078431 0.68 2.83165294118 1.0 -0.216141176471 3.04779411765 0.138605268751 0.551513149516 12389 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -8.7666 0.8491 -12.3088352941 3.54223529412 -0.0360525698361 0.49253199392 62289 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 not annotated putative regulatory region 7585 480596 chr10:48156119-48156151- NoOverlap chr10 48156119 48156151 - 12.2369909341 11 0.842253618816 8.34099105271 3.89599988135 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;48156118;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A48156119-48156151-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A48156119-48156151&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.418876938341 0.335368163389 0.492505430892 49364162 49364194 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;49364161;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A48156119-48156151-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A49364162-49364194&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HGLLYSSPELDGEDGEGDMYHPCGAPSPTSEDEEYLTINSTCQGQLPCEECLEADSGTIPLPQFCSWGTVPESLPPEESPESGSEWEDLEEPVALEYGALR Same 482506 chr10:48156119-48156151- 7419 7419 166 0 1371 48156119 48156259 2053 2053;7585 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:48156119-48156259&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575757575758 0.0 17.4988454545 0.9163 7.51425454545 9.98459090909 0.572691062782 0.873646123376 2703 2000 2000;2703 23.6748454545 0.5229 7.1608 16.5140454545 0.661654226988 0.866987901982 2958 Best 2958 2958;3394 0.0 0.0 ENST00000429307.1 NC coding exon(s) FRMPD2 alternative final exon 7586 557224 chr3:150894276-150894305- NoOverlap chr3 150894276 150894305 - 15.8410200119 10 0.89959563592 -7.52005995512 23.361079967 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;150894275;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A150894276-150894305-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A150894276-150894305&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.424062924648 0.335366286376 1.00184955792 150612063 150612092 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;150612062;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A150894276-150894305-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A150612063-150612092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IISFPSFQKLRQILFGNTVHVFSYNWK Same 558193 chr3:150894276-150894305- 6773 6773 813 0 342 150891061 150905397 469 469;1530;2695;7586;8869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:150891061-150905397&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.535714285714 21.63552 0.9706 -12.63633 34.27185 0.438530858563 0.976790826193 3618 200 200;1473;2046;2052;3618 31.54513 0.7092 -13.85073 45.39586 0.996589053164 0.990803398418 1164 250 250;1155;1164;1832;2392 0.0 0.0 ENST00000562308.5,ENST00000469268.1 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000214237 7587 539927 chr2:112440419-112440472- NoOverlap chr2 112440419 112440472 - 6.66628890567 18 0.743999389639 1.86598317491 4.80030573077 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;112440418;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A112440419-112440472-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A112440419-112440472&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.404877122433 0.335361195574 0.805104242182 113197996 113198049 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;113197995;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A112440419-112440472-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A113197996-113198049&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EVENEVFASLEKMAEELAKACEDFVQAVK Same 541288 chr2:112440419-112440472- 7576 7576 11 0 532 112440419 112440583 803 803;7587 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:112440419-112440583&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.462962962963 0.947368421053 12.4605611111 0.8839 2.76065555556 9.69990555556 0.64579253663 0.984563491411 2324 994 994;2324 14.4166944444 0.518 -0.385288888889 14.8019833333 0.658668429175 0.915805609153 2966 2046 2046;2966 0.0 0.0 pseudogene unitary pseudogene ENSG00000283698 7615 587650 chr8:105143621-105143704- NoOverlap chr8 105143621 105143704 - 4.28460712731 28 0.920881426501 0.589746366654 3.69486076065 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;105143620;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A105143621-105143704-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A105143621-105143704&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.42423994961 0.334821215082 0.781328021929 106155849 106155932 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;106155848;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A105143621-105143704-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A106155849-106155932&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADSFAIQACAGDNGRVGMKRGRDGLIMQRTWKFCLSSASK Same 588594 chr8:105143621-105143704- 7820 7820 -205 0 5467 105139340 105143726 Best 7615 7615;9563;30535 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:105139340-105143726&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.89124668435 -0.0409464285714 1.0 -0.796192857143 0.755246428571 0.0371788656761 0.420174178503 26372 25321 25321;26372;64761 -0.368289285714 0.9363 -3.22468571429 2.85639642857 0.100192064503 0.557505932199 11489 Best 11489 11489;17672;52092 0.0 0.0 ENST00000518927.1,ENST00000518180.1 NC,AntiNCintron not annotated potentially spurious 7622 539237 chr2:73081492-73081530- NoOverlap chr2 73081492 73081530 - 9.30039989031 13 0.755244115006 3.56941536957 5.73098452074 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;73081491;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73081492-73081530-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A73081492-73081530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.392704570107 0.334658890175 0.806855902879 73308620 73308658 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;73308619;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73081492-73081530-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A73308620-73308658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLSSLGINQEAHGFVSLHSLDVSPQVESDPAALPHHLPCSPWAPAPPTPAPTAAPMLSTNLFAAASPAAATAAAAATTAAPEATPPGLLGLTNPFLTSLQSNPFFEELIADIALNSPSPAPSLPSASR Same 540615 chr2:73081492-73081530- 7607 7607 15 0 311 73071669 73081530 418 418;1129;1310;1891;4235;7622;14465;18194;23824;54581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:73071669-73081530&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.820512820513 0.709090909091 10.6201615385 0.9359 3.89989230769 6.72026923077 0.419932405731 0.781095579211 3802 166 166;734;1495;1711;1973;3802;9955;14922;47668;73713 13.1977615385 0.6509 -2.81398461538 16.0117461538 0.597960213162 0.918500195647 3173 2300 2300;2572;2797;3173;3182;4993;30735;31537;41635;57875 0.0 0.256849425201 chr8:37871278-37873179- ENST00000479196.1,ENST00000258098.6,ENST00000482554.5 NC,CDSintron,NCintron coding exon(s) RAB11FIP5 2kb cassette exon 7715 558081 chr3:195908695-195908724- NoOverlap chr3 195908695 195908724 - 19.9936397791 10 0.748104066529 0.108389949799 19.8852498293 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;195908694;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195908695-195908724-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A195908695-195908724&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.393181764145 0.331988473777 0.991711147097 195635566 195635595 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;195635565;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195908695-195908724-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A195635566-195635595&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TRRRRRRRRW* Same 559055 chr3:195908695-195908724- 7734 7734 -19 0 319 195908695 195909767 435 435;1687;7715;11110;49936;55625;56550 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:195908695-195909767&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 1.33333333333 31.98631 0.9109 0.89577 31.09054 0.427871160524 1.03080607697 3722 374 374;1346;2237;3722;53564;66857;67033 26.35539 0.5797 -7.86758 34.22297 0.84247019923 1.04018548109 2340 2327 2327;2340;2709;4762;21424;33118;65052 0.0 0.121946114369 chrX:115233693-115234041- ENST00000333602.10,ENST00000468819.1,ENST00000458180.1 UTR5,NCintron,AntiNC under investigation TNK2 contains a series of NPRs in its 5' UTR that highlight a reading frame and STOP codon that are conserved in placental mammals, although no ATG initiation codon has been identified. However, a [CTG] codon has been identified that corresponds well to the 5' end of the NPR region and a consistent initiation codon peak in ribosome profiling data, giving a prospective 153aa single exon CDS [chr3:195909582-195908695]. 7747 473875 chr1:121029605-121029724- NoOverlap chr1 121029605 121029724 - 4.3749374792 40 0.390096894789 -0.670449986681 5.04538746588 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;121029604;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A121029605-121029724-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A121029605-121029724&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.112224246068 0.331086811777 0.976471895684 149692960 149693079 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;149692959;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A121029605-121029724-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A149692960-149693079&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DDQASLPPTSPMSWWFAVGADLLEKNLAEIQNLRQRLEESISLNDRLRERLQHVLSNGDQGK Same 475755 chr1:121029605-121029724- 8301 8301 -554 0 5560 121029605 121037796 Best 7747 7747;9994;42358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:121029605-121037796&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575 0.410256410256 3.6310475 0.5621 -4.418425 8.0494725 0.362180302717 1.0509007802 4495 3528 3528;4495;18701 18.8761625 0.5275 1.2292375 17.646925 1.08784424976 1.02647263509 89 Best 89 89;1964;15691 0.0976931224974 chr1:149017748-149017879+ 0.554873512061 chr1:149017748-149017879+ ENST00000612313.1 NCintron pseudogene phosphodiesterase 4D interacting protein (PDE4DIP) unprocessed pseudogene (ENSG00000275585) 7749 480308 chr10:24590383-24590418- NoOverlap chr10 24590383 24590418 - 6.19497507811 12 0.858700185651 -3.40351672967 9.59849180778 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;24590382;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24590383-24590418-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A24590383-24590418&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.125393768043 0.331075053679 1.04685821478 24879312 24879347 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;24879311;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A24590383-24590418-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A24879312-24879347&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLSHGNVTSGFCDVPDGQLEL*EEGGLLSTL Same 482217 chr10:24590383-24590418- 7454 7454 295 6 447 24590340 24590480 640 640;7749 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:24590340-24590480&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.0 6.388225 0.9632 -4.08526666667 10.4734916667 0.338806558387 0.994110112343 4857 1555 1555;4857 5.442775 0.9846 -10.1398833333 15.5826583333 0.283130008863 0.925781775099 4812 1929 1929;4812 0.0 0.0 ENST00000320481.10,ENST00000486374.5 CDSintron,NCintron coding exon(s) ARHGAP21 alternative final coding exon that would suggest NMD, although the CDS is conserved in vertebrates 7753 474990 chr1:178488562-178488600- NoOverlap chr1 178488562 178488600 - 5.63608465745 13 0.688455376164 -5.416561466 11.0526461234 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;178488561;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A178488562-178488600-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A178488562-178488600&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0575012248888 0.331045208817 1.03960209711 178457697 178457735 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;178457696;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A178488562-178488600-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A178457697-178457735&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHQSLGWPLTCWVLQTLPSHSLCFLADSSTGHRASAELPPLFHTSPTEMTEETTPRPGR Same 476871 chr1:178488562-178488600- 7860 7860 -107 0 541 178479544 178490348 820 820;978;4383;7753 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:178479544-178490348&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.615384615385 0.278571428571 7.74249230769 0.9107 -6.98507692308 14.7275692308 0.444643131483 1.04076043075 3553 945 945;1732;2988;3553 5.64572307692 0.3158 -7.15815384615 12.8038769231 0.164511400873 0.846833220061 7353 1971 1971;3265;4680;7353 0.0 0.0 protein-coding gene protein-coding gene ENSG00000188585 7767 510637 chr16:8884359-8884388+ NoOverlap chr16 8884359 8884388 + 10.7756699324 10 0.75182574197 -11.130760017 21.9064299494 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;8884358;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A8884359-8884388%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A8884359-8884388&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.286264937378 0.330764419223 0.991146059109 8978216 8978245 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;8978215;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A8884359-8884388%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A8978216-8978245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPLPQLYAGMSVVGTSMPVQAVCPYCGNR Same 512274 chr16:8884359-8884388+ 5789 5789 1978 0 955 8884359 8885277 1466 1466;1834;7767 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:8884359-8885277&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.606060606061 20.21455 0.9464 -17.08949 37.30404 0.336116355491 0.989349127147 4905 1415 1415;2376;4905 28.80241 0.4912 -15.8508 44.65321 0.629567981493 0.986563422131 3066 2072 2072;2635;3066 0.0 0.0 protein-coding gene protein coding gene ENSG00000283516 7795 548077 chr22:21468152-21468214+ NoOverlap chr22 21468152 21468214 + 6.81096671876 21 0.436259069127 -0.0683095540319 6.8792762728 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21468151;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21468152-21468214%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21468152-21468214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.151197771579 0.330145934349 0.99881427809 21822441 21822503 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21822440;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21468152-21468214%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21822441-21822503&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGGEVGTAPGPRPQEQHSRQLQEQWEELSSQVRAGDGR Same 549497 chr22:21468152-21468214+ 8335 8335 -540 0 857 21467445 21469818 1328 1328;2227;3023;6657;7795;18550;21659 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21467445-21469818&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.634920634921 0.358974358974 10.5095285714 0.8076 -6.14483809524 16.6543666667 0.743949285052 1.00469388703 1904 1035 1035;1287;1331;1719;1904;4183;5351 9.70347142857 0.4193 -12.2572095238 21.9606809524 0.692479229893 1.06922512202 2842 2446 2446;2467;2733;2842;3549;4935;9390 0.48543577598 chr22:18528817-18528867+ 0.548445685477 chr22:18528817-18528867+ ENST00000415764.5,ENST00000413877.5 NC,NCintron protein-coding gene protein coding gene ENSG00000206140 7799 479232 chr10:122750185-122750217+ NoOverlap chr10 122750185 122750217 + 12.1534636671 11 0.701594567788 -6.37337305329 18.5268367204 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122750184;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122750185-122750217%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122750185-122750217&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.369348506384 0.330066033907 0.974400489501 124509701 124509733 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124509700;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122750185-122750217%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124509701-124509733&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HNCGHLEDASVICSGEGCHLPGLHYCHR Same 481137 chr10:122750185-122750217+ 7207 7207 592 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575757575758 0.0 20.7556181818 0.8554 -1.27590909091 22.0315272727 0.534981003547 0.974066065477 2905 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 54.5245454545 0.9542 -14.9507545455 69.4753 0.983331643759 0.96948046742 1368 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.067785058689 chr10:122630961-122631281+ 0.179149450289 chr10:122576399-122576722+ pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 7824 573704 chr6:9705391-9705441- NoOverlap chr6 9705391 9705441 - 5.06748827766 17 0.776011919989 -2.49855858131 7.56604685897 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;9705390;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9705391-9705441-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A9705391-9705441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.189112187965 0.329272569149 1.01886478953 9705624 9705674 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;9705623;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9705391-9705441-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A9705624-9705674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FHFSLHIVELCYPTSSLHIGEELPVVVMGPLMLNAILLLLVLIR Same 574733 chr6:9705391-9705441- 7872 7872 -48 0 427 9697636 9705441 603 603;833;3220;7824 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:9697636-9705441&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.411764705882 0.75 7.73535882353 0.9706 -2.01032352941 9.74568235294 0.555469873056 0.999911124249 2780 557 557;715;1581;2780 25.9187705882 0.9271 -3.41612352941 29.3348941176 0.958995690504 1.05168487729 1712 489 489;548;738;1712 0.0 0.0 ENST00000492094.6 NC redundant PhyloCSF signals are accounted for elsewhere on the list 7862 534330 chr2:89538681-89538731+ NoOverlap chr2 89538681 89538731 + 8.52826467682 17 0.422705424582 0.38904705293 8.13921762389 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89538680;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89538681-89538731%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89538681-89538731&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.171721543858 0.328551867296 1.02161333059 91801027 91801077 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91801026;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89538681-89538731%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91801027-91801077&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLQGNAKRKVLRNIAAFLFLCNTLVICTK Same 535707 chr2:89538681-89538731+ 8372 8372 -510 0 52 89533188 89547118 59 59;529;844;1124;3586;7862 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89533188-89547118&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.411764705882 0.0 11.4156529412 0.5525 1.06607647059 10.3495764706 0.355479029549 1.00501246986 4594 10 10;123;831;1300;2657;4594 36.2606411765 0.773 -0.000323529411765 36.2609647059 1.05084810498 1.02880815504 312 Best 312 312;340;1357;1759;1894;1991 0.997896168566 chr4:4197166-4198103- 0.999465624341 chr4:4197166-4198103- pseudogene Otopetrin 1 (OTPO1) unprocessed pseudogene (ENSG00000283427) 7892 505119 chr14:93926482-93926517- NoOverlap chr14 93926482 93926517 - 8.57930833101 12 0.865995269703 1.14895839492 7.43034993609 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;93926481;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A93926482-93926517-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A93926482-93926517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.338374074194 0.327698875445 0.94837853536 94392828 94392863 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;94392827;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A93926482-93926517-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A94392828-94392863&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLNRVVMMEKEVDKAHR Same 506966 chr14:93926482-93926517- 7397 7397 495 0 3263 93926359 93927414 4529 4529;5519;7892;32325;72262 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:93926359-93927414&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.923076923077 -0.306216666667 1.0 -1.93510833333 1.62889166667 -0.0268243318569 0.385898643899 58582 8144 8144;12586;16200;29537;58582 -0.909675 0.9363 -3.01990833333 2.11023333333 -0.00258440351179 0.41978691455 36661 8416 8416;20263;26837;36661;44192 0.0 0.0 ENST00000554538.1,ENST00000267594.5,ENST00000557719.1 NCintron,AntiCDSintron,AntiUTR5intron not annotated potentially spurious 7906 590121 chr9:122607894-122607920+ NoOverlap chr9 122607894 122607920 + 14.1931555139 9 0.834153081899 -0.143899940782 14.3370554547 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;122607893;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122607894-122607920%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A122607894-122607920&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.331945668773 0.327319460435 0.994830413796 125370173 125370199 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;125370172;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122607894-122607920%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A125370173-125370199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NQTCIYEFLLMGFSEHQEQQALLFGLFLVMYLVTVLENLLIILAIGSDLHLHTPHVPLPVQPVLFGYWLYLYNNSQYAR Same 591068 chr9:122607894-122607920+ 8292 8292 -386 0 440 122607894 122608010 629 629;7906 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:122607894-122608010&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.407407407407 0.0 9.17795555556 0.8846 -12.7255333333 21.9034888889 0.32019140157 0.95685230081 5199 2242 2242;5199 30.8134555556 0.8189 -34.1243111111 64.9377666667 0.737045210485 1.0944761545 2686 1651 1651;2686 0.0 0.270228775686 chr7:144003997-144004932+ pseudogene extension OR1H1P pseudogene extended (ENSG00000228914) 7911 582320 chr7:115679479-115679526- NoOverlap chr7 115679479 115679526 - 6.45397499204 16 0.886900129702 0.670887465589 5.78308752645 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;115679478;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115679479-115679526-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A115679479-115679526&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.36712993667 0.327222764546 0.884933817536 115319533 115319580 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;115319532;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115679479-115679526-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A115319533-115319580&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSDQLNFNEKQVLECSIHKEFWECLK Same 583281 chr7:115679479-115679526- 7688 7688 223 0 5672 115673834 115679526 Best 7911 7911;18821;19702;21896;25172;45048;57068 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:115673834-115679526&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.479166666667 0.0 0.542075 1.0 -1.23873125 1.78080625 0.0181817248115 0.430884319871 33321 9148 9148;20280;33321;35228;35655;36146;49962 -7.31573125 0.8932 -9.5511 2.23536875 -0.0369279261907 0.440719057916 62910 6859 6859;16053;21757;25065;26080;28039;62910 0.0 0.0 ENST00000470532.1 NC not annotated potentially spurious 7912 518058 chr17:48593629-48593838+ NoOverlap chr17 48593629 48593838 + 2.56936141167 70 0.877431688629 -0.233724308014 2.80308571969 ENST00000239151.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48593628;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593629-48593838%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48593629-48593838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.353155671515 0.327222571419 0.807287768399 46670991 46671200 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46670990;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593629-48593838%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46670991-46671200&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLIVRAIWITPREGVYKVRAHLGDFGGLDLWIVVVITLCFTIYDVLMNYSDALYFVLLCMRPNMGGGLEGGWGALGNHVLLLTSR Same 519459 chr17:48593629-48593838+ 7031 7031 881 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.485714285714 0.954111767378 0.0454657142857 0.9948 -0.885414285714 0.93088 0.190975200065 0.510081611133 9183 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -8.33430571429 0.891 -9.61217 1.27786428571 0.0500098396825 0.542600039956 18735 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000239151.5,ENST00000552000.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 7927 566049 chr5:148243390-148243425+ NoOverlap chr5 148243390 148243425 + 8.61696658532 12 0.639333943694 -11.7759665747 20.3929331601 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;148243389;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A148243390-148243425%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A148243390-148243425&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.223968119923 0.326750050082 1.00747546364 147622953 147622988 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;147622952;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A148243390-148243425%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A147622953-147622988&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSSQQGNIGSPSQQEKPESSSQQGNLGSSSYQGKPVSSSQQGKPVSSSQQGKPGASNQQGDLGSSK Same 567044 chr5:148243390-148243425+ 4867 4867 3060 0 870 148243009 148243425 1343 1343;1796;7927 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:148243009-148243425&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.0 2.0425 0.8653 -24.0813083333 26.1238083333 0.314621014583 0.946270448715 5297 2276 2276;2647;5297 -3.20163333333 0.6659 -32.96135 29.7597166667 0.363976072595 1.06519578579 4151 2601 2601;2893;4151 0.0 0.201651144014 chr3:99794230-99796136+ protein-coding gene protein coding gene ENSG00000248109 7942 595882 chrX:149931016-149931078+ NoOverlap chrX 149931016 149931078 + 4.28995240409 21 0.455100328069 -5.80294290327 10.0928953074 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;149931015;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149931016-149931078%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A149931016-149931078&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0307591063537 0.326482185062 1.04521651268 149099234 149099296 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;149099233;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149931016-149931078%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A149099234-149099296&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPLGNGPPQEPNGPSWEGTSGNVTFTSSATTWMEGTGILSSLVYSDNGSVMSLYNICYYALLASLSVMSPNEPSDDEEE Same 596524 chrX:149931016-149931078+ 7315 7315 627 0 812 149929879 149931078 1263 1263;7942 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:149929879-149931078&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.428571428571 0.388888888889 3.21193333333 0.7177 -15.8754571429 19.0873904762 0.56511686122 0.961001050855 2746 59 59;2746 -0.214780952381 0.3429 -23.0690333333 22.854252381 0.451295303268 1.10215719575 3728 2025 2025;3728 0.0 0.0 ENST00000462691.5 AntiCDSintron protein-coding gene protein coding gene ENSG00000283463 7945 544147 chr20:58852782-58852817+ NoOverlap chr20 58852782 58852817 + 7.35804180304 12 0.717441062028 -3.26460819443 10.6226499975 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;58852781;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58852782-58852817%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A58852782-58852817&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.182232411405 0.326374762226 1.04592031583 57427837 57427872 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;57427836;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58852782-58852817%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A57427837-57427872&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPCEACAHQPPYPKSRAPGAR Same 545538 chr20:58852782-58852817+ 8465 8465 -520 0 305 58839591 58856213 410 410;1778;7945;12986;19091;20890;24880;65020;71495 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:58839591-58856213&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.75 0.473684210526 7.425175 0.9803 -2.7036 10.128775 0.403453962185 0.978956321132 3966 115 115;1018;3966;4263;7912;16426;32661;49033;70767 6.372875 0.3594 -3.74070833333 10.1135833333 0.137009218716 0.738438150254 8695 366 366;3178;7236;8695;17364;24762;29540;46544;65521 0.0 0.0 ENST00000371100.8,ENST00000313949.11,ENST00000462499.5 UTR5,UTR3intron,NCintron coding exon(s) GNAS cassette exon 7949 484845 chr11:64241149-64241190+ NoOverlap chr11 64241149 64241190 + 8.10252852419 14 0.794695310031 2.54264264873 5.55988587545 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64241148;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64241149-64241190%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64241149-64241190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.391619277803 0.326228773587 0.823131803674 64008621 64008662 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64008620;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64241149-64241190%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64008621-64008662&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGATARAGGSRGARGQAGSGR Same 486792 chr11:64241149-64241190+ 7725 7725 224 0 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.785714285714 0.388888888889 7.37571428571 0.9441 0.0161071428571 7.35960714286 0.346476606428 0.855004829088 4730 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 0.416057142857 0.6674 -5.86303571429 6.27909285714 0.0820008188712 0.609696253805 13537 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.0 ENST00000449942.6,ENST00000309366.8,ENST00000536642.5 UTR5,UTR5intron,NCintron under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 7957 551733 chr3:28576036-28576071+ NoOverlap chr3 28576036 28576071 + 9.01088319719 12 0.747486076143 0.730616758267 8.28026643892 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;28576035;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576036-28576071%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A28576036-28576071&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.316913775901 0.326016548792 0.988720071347 28617527 28617562 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;28617526;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576036-28576071%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A28617527-28617562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DALCLAGLPGAPEGQRSKDTRPPAPR Same 552670 chr3:28576036-28576071+ 8351 8351 -394 0 983 28576036 28576517 1505 1505;5038;5448;7957;10074;23556 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:28576036-28576517&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.722222222222 0.872727272727 1.24058333333 0.7464 -4.02338333333 5.26396666667 0.00869521058076 0.691685900473 37362 2378 2378;7891;9594;33970;37362;68747 1.73495 0.3908 -9.90698333333 11.6419333333 0.106121303929 0.803532425449 10942 2933 2933;5925;8065;10942;38452;44104 0.0 0.0 ENST00000432518.6 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 7972 584198 chr8:54701612-54701653+ NoOverlap chr8 54701612 54701653 + 4.90564277342 14 0.825255861099 -4.30320708241 9.20884985583 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;54701611;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54701612-54701653%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A54701612-54701653&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0557681289359 0.325574280049 1.04934966265 55614172 55614213 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;55614171;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A54701612-54701653%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A55614172-55614213&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IADASSAGYANLSKEFVIFVK Same 585129 chr8:54701612-54701653+ 7803 7803 169 0 378 54701510 54706652 525 525;545;7972 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:54701510-54706652&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 5.26276428571 0.9394 -6.38767142857 11.6504357143 0.358860199636 1.03807892818 4550 512 512;762;4550 13.1650642857 0.6713 -8.39360714286 21.5586714286 0.728091062341 1.034476386 2717 228 228;1160;2717 0.0 0.0 ENST00000521465.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 8002 494062 chr12:2726633-2726722- NoOverlap chr12 2726633 2726722 - 2.80053666631 30 0.60220442003 -3.67804670334 6.47858336965 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2726632;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2726633-2726722-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2726633-2726722&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0173100281358 0.324760251144 1.03055742462 2835799 2835888 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2835798;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2726633-2726722-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2835799-2835888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VELGAGEVEEGYMVGIQEHTTSPKKFILNFHQR Same 496056 chr12:2726633-2726722- 8849 8849 -847 0 179 2726421 2727050 216 216;432;1226;2632;8002 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2726421-2727050&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.0 4.08172666667 0.4823 -3.82340666667 7.90513333333 0.214631187155 1.00931970624 8206 1901 1901;3324;5423;5720;8206 9.56949333333 0.4145 -7.77126 17.3407533333 0.776684823591 1.03887775603 2558 333 333;1730;1907;2558;2603 0.0 0.0 pseudogene gap junction beta family pseudogene (ENSG00000283587) 8012 476457 chr1:244051321-244051410- NoOverlap chr1 244051321 244051410 - 3.27256666229 30 0.847696650645 -1.67656002964 4.94912669193 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244051320;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244051321-244051410-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244051321-244051410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.231193313524 0.324432549193 0.926831621694 244214623 244214712 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244214622;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244051321-244051410-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244214623-244214712&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLSSESCWLQVCYIGGKKAD*ERQMQSGDDVREE Same 478351 chr1:244051321-244051410- 7997 7997 15 12 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.229591836735 2.11607666667 0.9987 -1.23945 3.35552666667 0.256020488817 0.682895580946 6792 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -3.45367333333 0.8518 -8.05005666667 4.59638333333 0.0850290456086 0.635569160123 13146 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0 ENST00000358704.4,ENST00000622512.1 AntiUTR5,AntiUTR5intron not annotated putative regulatory region 8028 492596 chr12:89351989-89352087+ NoOverlap chr12 89351989 89352087 + 4.16391815922 33 0.961708178142 1.59725459055 2.56666356867 ENST00000279488.7,ENST00000308385.6,ENST00000548755.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;89351988;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89351989-89352087%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A89351989-89352087&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.47916177026 0.323956009627 0.67619701148 89745766 89745864 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;89745765;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89351989-89352087%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A89745766-89745864&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LADRHFRREGHGSERIYHGGRAAGEGGVPTRRPSGQA Same 494578 chr12:89351989-89352087+ 8497 8497 -469 0 1997 89351989 89353104 2898 2898;3067;8028;9679;12637;22392;31672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:89351989-89353104&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.0234962406 -2.69024545455 0.9818 -2.63067272727 -0.0595727272727 -0.068320654573 0.347902236611 73002 3934 3934;7220;23441;23638;59195;70262;73002 -15.6474393939 0.8435 -20.7767181818 5.12927878788 -0.0411055770877 0.581282674105 66039 3920 3920;22214;30464;33580;34681;56829;66039 0.0 0.0 ENST00000611513.1,ENST00000279488.7 NC,AntiCDS not annotated putative regulatory region 8049 679710 chr2:135024648-135024740- Extension chr2 135024648 135024740 - 5.08323549095 31 0.738094148165 2.86890963585 2.2143258551 chr2:135024642-135024740- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;135024647;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A135024648-135024740-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A135024648-135024740&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.532132638299 0.323429801838 0.613472466798 135782218 135782310 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;135782217;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A135024648-135024740-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A135782218-135782310&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DPKLCDFSGKSAIHYVSQIESSKKQQLLDILMSSMPKPGK Same 680297 chr2:135024648-135024740- 8281 8281 -232 0 104 135024648 135040536 124 124;489;494;8049 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:135024648-135040536&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.322580645161 0.0 9.63449032258 0.9591 3.61304516129 6.02144516129 0.803759880289 0.893312693339 1657 338 338;436;793;1657 9.16858064516 0.372 1.77253870968 7.39604193548 0.431203958444 0.757528995142 3818 1904 1904;2042;3035;3818 0.0 0.0 ENST00000358371.8,ENST00000414343.1,ENST00000468155.5 Extension5p,UTR5intron,NCintron pseudo-exon MAP3K19 has three upstream coding exons in other species, although in human the second has a non-variant premature termination codon, so the gene had been made to use a downstream ATG. It has been maintained as coding due to PMID:27144281 8064 531032 chr19:37830421-37830459- NoOverlap chr19 37830421 37830459 - 6.97761547795 13 0.81821340329 -1.27266919154 8.25028466949 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37830420;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830421-37830459-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37830421-37830459&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.253397134908 0.32325915154 1.01598355693 38321061 38321099 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38321060;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830421-37830459-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38321061-38321099&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VILLPGSVGAITESYCWCLWHYEGFLTSSESK Same 532499 chr19:37830421-37830459- 7902 7902 162 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.512820512821 0.0 15.2204538462 0.9211 1.48780769231 13.7326461538 0.657748509713 1.02198746727 2267 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 24.8624230769 0.4738 1.59808461538 23.2643384615 0.728117142553 1.01414075039 2716 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.172846126439 chr19:37892578-37895456- 0.48577777368 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 8096 539834 chr2:110025925-110026032- NoOverlap chr2 110025925 110026032 - 5.18152227336 36 0.57812110577 2.33305553719 2.84846673616 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110025924;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025925-110026032-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110025925-110026032&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.388173305028 0.322560080458 0.731496261875 110783502 110783609 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110783501;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025925-110026032-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110783502-110783609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PSSPPPPGLSTPSGPCQPGYFCAEGASSPSPKDRVTGAPCPLGSFCR Same 541194 chr2:110025925-110026032- 8487 8487 -391 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.0857142857143 8.66245277778 0.7994 3.68563611111 4.97681666667 0.622238338408 0.851074730417 2430 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 20.51685 0.6126 6.44676666667 14.0700833333 1.02549948805 0.954352858041 687 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 8119 485942 chr11:111459756-111459782+ NoOverlap chr11 111459756 111459782 + 13.8282887671 9 0.826977950713 0.126722229852 13.7015665372 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111459755;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111459756-111459782%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111459756-111459782&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.324208835511 0.322012053824 0.994198371409 111330481 111330507 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111330480;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111459756-111459782%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111330481-111330507&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YPGTELWAPALYGMEIPDPEGSGLMVPILGMEHDENSGDATPLAGSMEDADGK Same 487900 chr11:111459756-111459782+ 8601 8601 -482 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.75 20.9768888889 0.9656 -5.3828 26.3596888889 0.637881213023 0.958750292304 2361 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 54.3172777778 0.8527 5.66002222222 48.6572555556 0.990910665241 0.994276557905 1265 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 pseudogene unitary pseudogene ENSG00000255093 8130 539838 chr2:110030008-110030124- NoOverlap chr2 110030008 110030124 - 5.27427692864 39 0.482382676706 2.16046414926 3.11381277939 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110030007;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110030008-110030124-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110030008-110030124&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.296668880685 0.32174240064 0.781990708662 110787585 110787701 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110787584;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110030008-110030124-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110787585-110787701&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MFLSMVSEGLSCPPGHFCGASGLAAPSGPCSPGYFCLAGASSPTPTGVEPPGSG Same 541198 chr2:110030008-110030124- 8660 8660 -530 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.692307692308 0.229411764706 9.66935641026 0.7977 2.78898974359 6.88036666667 0.796937482179 0.976556432696 1681 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 28.1941897436 0.7572 8.35241025641 19.8417794872 1.05730800061 1.03296408056 244 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 8132 473851 chr1:120558303-120558365- NoOverlap chr1 120558303 120558365 - 6.43126660869 21 0.809887119569 4.20397146543 2.22729514326 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;120558302;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120558303-120558365-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A120558303-120558365&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.546503378795 0.321698602618 0.519300809503 144931868 144931930 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;144931867;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120558303-120558365-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A144931868-144931930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FHARPLPEGRG*RLWYPESARGTGARPCR Same 475730 chr1:120558303-120558365- 8052 8052 80 10 332 120557034 120558959 455 455;1179;8132;9030 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:120557034-120558959&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.809523809524 0.875 3.35890952381 0.8985 2.32571428571 1.0331952381 0.0890536068714 0.405295503561 17149 909 909;960;17149;46807 1.78640952381 0.4563 -2.50490952381 4.29131904762 0.11014296203 0.579261435044 10626 1642 1642;2295;10626;64986 0.0 0.0 ENST00000612480.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 8158 554454 chr3:187745723-187745776+ NoOverlap chr3 187745723 187745776 + 6.99180016718 18 0.901915854971 4.45093349616 2.54086667103 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;187745722;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187745723-187745776%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A187745723-187745776&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.519911824881 0.321057523752 0.523123655721 187463511 187463564 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;187463510;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187745723-187745776%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A187463511-187463564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQDDGMACSATITWAPPL*RRR Same 555404 chr3:187745723-187745776+ 8150 8150 8 3 576 187739883 187745776 875 875;1104;7504;8158;11541;34107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:187739883-187745776&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.685185185185 0.803571428571 5.66852222222 0.988 -1.8732 7.54172222222 0.433969536058 0.909191518993 3665 Best 3665 3665;8409;10256;24508;44991;56743 -0.479744444444 0.7114 -5.75537777778 5.27563333333 0.0867705562007 0.598824074789 12942 5778 5778;12942;12969;14939;33269;59538 0.0 0.0 ENST00000406870.6 AntiUTR5 under investigation Finds a putative 38aa CDS antisense to the 5' UTR of BCL6. However, it is difficult to interpret the accuracy of the PhyloCSF signal here as the region has deep conservation over a wider region, presumptively due to being the promoter of BCL6, and the 38aa CDS has very low complexity. There is also very little transcriptional support for the locus in human or mouse. 8196 481635 chr10:100135484-100135513- NoOverlap chr10 100135484 100135513 - 17.9490400046 10 0.848921950103 -2.85166020393 20.8007002085 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100135483;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100135484-100135513-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100135484-100135513&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.424133801985 0.320278907512 1.03116228813 101895241 101895270 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101895240;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100135484-100135513-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101895241-101895270&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FHTSTYTGACISFQLAKEYSSVYTLYFGSWPTMVFHGYK Same 483551 chr10:100135484-100135513- 7686 7686 510 0 722 100135400 100140071 1114 1114;1368;8196 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100135400-100140071&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.0 6.09546 0.8311 -0.54701 6.64247 0.078363125684 0.766028895547 18502 9829 9829;18502;23911 27.69414 0.6587 -2.23917 29.93331 0.941709317075 1.04304118705 1870 1781 1781;1870;4445 0.0 0.359356745203 chr19:40881589-40881751- pseudogene unitary pseudogene ENSG00000283232 8217 539874 chr2:110397399-110397497- NoOverlap chr2 110397399 110397497 - 5.06183029666 33 0.371187729897 -0.606393989288 5.66822428595 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110397398;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110397399-110397497-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110397399-110397497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0978227010138 0.319933675733 0.9911611486 111154976 111155074 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111154975;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110397399-110397497-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111154976-111155074&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFSSSMPVYDFNWWYSLYFIIYIIINTYIFKSVFLAMVYSNYRKHFHILCVCVCVFCSDEQNLLFTQFYYLS Same 541234 chr2:110397399-110397497- 8834 8834 -617 0 1194 110397399 110408025 1806 1806;2085;2438;3107;4591;8217;15827;15899 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110397399-110408025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.323232323232 0.0 12.9245424242 0.7345 0.199221212121 12.7253212121 0.965295602874 1.04922185863 1001 48 48;279;480;726;1001;1821;1905;2030 33.5217515152 0.7772 2.92770606061 30.5940454545 1.01359330807 1.03598421913 881 350 350;364;877;881;1131;1304;1506;1758 0.0 0.0 ENST00000488671.1 NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000184115) 8244 570775 chr6:26196547-26196594+ NoOverlap chr6 26196547 26196594 + 4.87889997661 16 0.601706149386 -5.24121885747 10.1201188341 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;26196546;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A26196547-26196594%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A26196547-26196594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0477982259137 0.31936636223 1.04935219763 26196775 26196822 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;26196774;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A26196547-26196594%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A26196775-26196822&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAKKVPKPEASKPKKAAPK Same 571799 chr6:26196547-26196594+ 8344 8344 -100 0 963 26196321 26196594 1475 1475;4317;8244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:26196321-26196594&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.492307692308 6.726925 0.8125 -13.79441875 20.52134375 0.535993962783 0.948882426954 2898 91 91;2362;2898 17.961375 0.5205 -14.75474375 32.71611875 0.822306924041 1.01770824016 2402 16 16;2402;2695 0.728209590573 chr6:26055787-26056428- 0.556202184014 chr6:26055787-26056428- pseudogene histone 1, H1, pseudogene 1 (ENSG00000216331) 8272 465716 chr1:62153386-62153469+ NoOverlap chr1 62153386 62153469 + 3.23256069848 28 0.946090965569 -2.39377507035 5.62633576883 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;62153385;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62153386-62153469%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A62153386-62153469&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.17189426314 0.318828311892 0.970690532185 62619058 62619141 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;62619057;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62153386-62153469%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A62619058-62619141&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IITLEKGSEGLGFSIVGGYGSPHGDLPIYVKTVFAK Same 467576 chr1:62153386-62153469+ 9281 9281 -1009 0 348 62153386 62161057 477 477;8272 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:62153386-62161057&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.47619047619 0.0 3.60121428571 0.9839 -0.852585714286 4.4538 0.364562668782 0.768582036728 4470 710 710;4470 35.2049892857 0.9313 7.4171 27.7878892857 1.01056043232 1.05297432267 936 894 894;936 0.0 0.285361779798 chr9:13108936-13109059- ENST00000484937.5,ENST00000371158.6 NC,CDSintron coding exon(s) PATJ cassette exon 8280 581040 chr7:38249520-38249549- NoOverlap chr7 38249520 38249549 - 11.8317101002 10 0.788693064775 2.6208799839 9.21083011627 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;38249519;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38249520-38249549-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A38249520-38249549&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.333307873937 0.318707373252 0.951352431549 38289121 38289150 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;38289120;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A38249520-38249549-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A38289121-38289150&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLDADVSPKPTIFLPSIAETK None NA NA 0 578 38240099 38265655 880 880;946;1212;1353;2319;3451;3622;4048;8280;41779;49225 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:38240099-38265655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 1.15384615385 19.05644 0.9355 6.08794 12.9685 0.648876452371 0.946871603422 2312 1335 1335;1528;1788;1910;2091;2312;3177;3446;5221;5413;7771 20.34156 0.3902 3.13584 17.20572 0.411926370758 0.893469970457 3896 2500 2500;2518;2952;3009;3184;3667;3896;4112;4120;5226;6124 0.0 0.0 ENST00000436911.6,ENST00000610516.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 8309 577665 chr7:27143617-27143883+ NoOverlap chr7 27143617 27143883 + 2.54596399122 89 0.856189547913 0.785274116176 1.76068987505 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27143616;267;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143617-27143883%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27143617-27143883&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.479531454082 0.318053797284 0.666154959454 27183236 27183502 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27183235;267;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143617-27143883%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27183236-27183502&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AHLFFDMCA*FVARGRLCVYSTLAQFMMNYGNDWDMYLVPSYVGTQIWGTTSNHVLLLSSRKSCLMTSRGKLVH**GSWVEARGVARAPRARAR Same 578704 chr7:27143617-27143883+ 6645 6645 1664 24 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539325842697 1.00197511357 -0.878298876404 0.9993 -2.31960449438 1.44130561798 0.234610615842 0.51483300501 7469 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -10.1052932584 0.9072 -9.4321741573 -0.673119101124 0.0347533736251 0.460568455136 22358 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222726.3,ENST00000467897.2 NCintron,AntiUTR5,AntiNCintron not annotated putative regulatory region 8327 485271 chr11:67539169-67539219+ NoOverlap chr11 67539169 67539219 + 6.81938823882 17 0.632255777111 0.42792346197 6.39146477685 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;67539168;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67539169-67539219%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A67539169-67539219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.272231458225 0.317691659792 0.940655946397 67306640 67306690 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;67306639;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67539169-67539219%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A67306640-67306690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DPLTQNQG*QAFIVGNKVSAGSSLSQIIVGPFLR Same 487227 chr11:67539169-67539219+ 8867 8867 -540 4 418 67538911 67540581 590 590;7079;8327;9330;15109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:67538911-67540581&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.588235294118 0.230769230769 9.13719411765 0.969 -9.0676 18.2047941176 0.745011239242 0.984332428062 1897 51 51;1631;1897;1917;5012 13.9001941176 0.3922 -9.50860588235 23.4088 0.637125302945 1.05762428837 3030 118 118;3030;3177;3475;4027 0.255631331936 chr11:67586104-67586273+ 0.418799940344 chr11:67586104-67586273+ pseudogene glutathione S-transferase pi 1 (GSTP1) unprocessed pseudogene (ENSG00000283257) 8335 537041 chr2:227745894-227746025+ NoOverlap chr2 227745894 227746025 + 4.76554772461 44 0.667320723833 2.93679996004 1.82874776457 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227745893;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227745894-227746025%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227745894-227746025&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.532083141064 0.317491373614 0.642184274363 228610610 228610741 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228610609;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227745894-227746025%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228610610-228610741&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FSSVLSTDTMGCCGCGGCGGGCGGCSGGCGGGCGGGCGGGGCGGGCGSCTTCR Same 538411 chr2:227745894-227746025+ 8698 8698 -363 0 428 227745894 227746196 608 608;8335 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227745894-227746196&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 0.415879017013 14.5731409091 0.8047 10.3812863636 4.19185454545 0.910673969841 0.815014521386 1267 1091 1091;1267 12.8658659091 0.5858 8.54628636364 4.31957954545 0.606904682504 0.676280999378 3143 Best 3143 3143;3417 0.0 0.125764763261 chr11:1697246-1697635+ protein-coding gene protein-coding gene ENSG00000284635 8338 477239 chr10:38333047-38333124+ NoOverlap chr10 38333047 38333124 + 7.35539618822 26 0.366796368353 2.6798576598 4.67553852842 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;38333046;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38333047-38333124%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A38333047-38333124&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.178715247914 0.317431776441 0.861593784232 38621975 38622052 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;38621974;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38333047-38333124%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A38621975-38622052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLGFLTFFVSEYFFQGQRLFEKLLQLTSQNIEIKLVSDVTADSK Same 479132 chr10:38333047-38333124+ 9412 9412 -1074 0 5942 38333047 38333124 Best 8338 8338 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:38333047-38333124&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.384615384615 0.696428571429 19.0816615385 0.9367 9.97928461538 9.10237692308 0.974914283113 0.979422717222 933 Best 933 933 25.6303846154 0.5316 8.54358461538 17.0868 1.02205147498 0.973516733508 755 Best 755 755 0.998764121743 chr1:242265337-242265448- 1.01517076525 chr1:242265337-242265448- ENST00000450980.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 8363 481845 chr10:101331011-101331115- NoOverlap chr10 101331011 101331115 - 2.74772293993 35 0.917906462196 -2.17156856656 4.91929150649 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;101331010;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A101331011-101331115-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A101331011-101331115&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.174204405823 0.31675934765 0.949422991156 103090768 103090872 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;103090767;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A101331011-101331115-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A103090768-103090872&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FFSDLWA*RRIIHSRAAVWKDSSAAKCDCTSGSVWERSYD Same 483762 chr10:101331011-101331115- 8673 8673 -310 3 5961 101322790 101331146 Best 8363 8363;24314;33173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:101322790-101331146&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.485714285714 0.530303030303 -0.572534285714 1.0 -2.10341714286 1.53088285714 0.0589955463273 0.520411989745 21427 14302 14302;21427;38701 -4.75614 0.7109 -8.01629714286 3.26015714286 0.0577651800535 0.594015464468 17236 11247 11247;17236;33590 0.0 0.0 not annotated potentially spurious 8399 525523 chr18:26548894-26549199- NoOverlap chr18 26548894 26549199 - 3.23779707475 102 0.628548881977 2.06790097303 1.16989610173 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26548893;306;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26548894-26549199-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26548894-26549199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.47803092182 0.315870032639 0.59469633157 24128858 24129163 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;24128857;306;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26548894-26549199-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A24128858-24129163&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QPHPAPKPRPLRPGRGRREGAGPRRASSTLLINLPAPLRSGRPQTRVSRGSTRGPPGAAAAPTPRLRGAMRGQWKGHCSSGIT*RNETVPPSRRPSLSPARARAILRQR Same 526966 chr18:26548894-26549199- 4361 4361 4038 24 513 26546760 26549891 768 768;8399;25501;30998;36827;39211;40894;58515;70807;71876 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26546760-26549891&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.758169934641 0.890625 -1.65045588235 0.807 -3.11505686275 1.46460098039 0.112698733336 0.499255764321 14614 2222 2222;11084;12141;14614;15029;28171;62885;67707;71661;73517 -6.49246862745 0.3702 -8.03632745098 1.54385882353 0.0217834840477 0.562815264434 26392 2942 2942;16429;16512;26392;33196;52681;55735;64991;73449;73633 0.0 0.0509124619135 chr17:42672086-42672392- ENST00000408011.7,ENST00000580191.5,ENST00000317932.11 UTR5,CDSintron,UTR5intron coding exon(s) KCTD1 5' extension 8406 548042 chr22:20703471-20703536+ NoOverlap chr22 20703471 20703536 + 5.69469993494 22 0.431362838733 -2.05774094977 7.75244088471 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;20703470;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20703471-20703536%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A20703471-20703536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0904839543143 0.315668606467 1.04203873174 21057759 21057824 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21057758;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20703471-20703536%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21057759-21057824&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NELELAETKCALQEEKLQQVRAEAGSVGGG Same 549462 chr22:20703471-20703536+ 8645 8645 -239 0 1508 20702136 20704490 2244 2244;3957;4169;8406;12453;12907;29209;29720;35559;56010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:20702136-20704490&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606060606061 0.376068376068 5.78798636364 0.7617 -5.93372727273 11.7217136364 0.504392794054 1.06700815384 3116 130 130;847;1263;1735;2520;3116;3637;4021;20091;38948 5.71475909091 0.4886 -11.1265181818 16.8412772727 0.562303138916 1.01709846419 3297 1022 1022;2706;2800;2896;3161;3297;5293;6158;8692;8932 0.443969683077 chr22:18529441-18529497+ 0.529932880913 chr22:18529441-18529497+ ENST00000414022.5,ENST00000454833.5 NC,NCintron pseudogene transmembrane protein 191A pseudogene (ENSG00000226287) 8408 588112 chr8:142574612-142574650- NoOverlap chr8 142574612 142574650 - 7.76259241884 13 0.743801022354 -0.221684662195 7.98427708103 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;142574611;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142574612-142574650-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A142574612-142574650&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.281910369094 0.315592080689 0.997910178205 143655973 143656011 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;143655972;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142574612-142574650-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A143655973-143656011&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RWVSSTTLLCYGQMALHAK Same 589057 chr8:142574612-142574650- 8729 8729 -321 0 902 142572180 142575904 1386 1386;1889;2097;3879;8408;13162;50093;62741 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:142572180-142575904&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.589743589744 0.0 16.8837615385 0.8646 -2.42663076923 19.3103923077 0.605966098764 0.989853966123 2516 1388 1388;1898;2170;2516;2563;4680;8183;28509 15.9125846154 0.4104 -9.71513846154 25.6277230769 0.560079408957 1.05498757267 3308 2925 2925;3250;3308;3738;3861;3909;7574;37771 0.0 0.245434855341 chr17:28633549-28633751- pseudogene extension MROH4P 6 new exons at 5' end 8419 585618 chr8:144051015-144051050+ NoOverlap chr8 144051015 144051050 + 10.7859834731 12 0.581043208464 -5.57406647007 16.3600499431 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144051014;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144051015-144051050%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144051015-144051050&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.298346918024 0.315440119462 0.972490028005 145105916 145105951 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145105915;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144051015-144051050%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145105916-145105951&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AKPWRGRRLDYITYR Same 586556 chr8:144051015-144051050+ 8159 8159 260 0 591 144049161 144051191 902 902;1476;2944;3502;6411;8419;8554;19953;27554 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144049161-144051191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.638888888889 1.09090909091 19.5647916667 0.8499 -16.1649666667 35.7297583333 0.382178387063 1.01092287899 4232 822 822;1234;1275;2096;2721;3466;4144;4232;11683 20.655475 0.5448 -21.6589916667 42.3144666667 0.738050485904 0.938986144614 2682 1010 1010;1721;1924;2036;2359;2452;2682;3550;3684 0.0 0.0872029620466 chr16:88719802-88719960- ENST00000528912.1 NC pseudogene unitary pseudogene (ENSG00000204791) 8420 597384 chrX:149549583-149549612- NoOverlap chrX 149549583 149549612 - 12.5751502633 10 0.70582589456 1.21651009321 11.3586401701 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;149549582;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149549583-149549612-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A149549583-149549612&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.324868683868 0.315377018202 0.995689069193 148631128 148631157 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;148631127;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A149549583-149549612-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A148631128-148631157&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSFPRKLWTIVEEDTFK Same 598034 chrX:149549583-149549612- 9627 9627 -1207 0 40 149548419 149549612 44 44;449;1374;8420 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:149548419-149549612&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.666666666667 17.94193 0.6609 4.40966 13.53227 0.275828814797 0.973793180707 6198 96 96;3011;3881;6198 34.85266 0.5375 6.68275 28.16991 0.783202151208 1.00928961991 2536 1236 1236;2536;3537;4004 0.0940294033019 chrX:149594137-149594700- 0.503937227371 chrX:149594137-149594700- ENST00000431993.1,ENST00000422892.2 NC,AntiUTR3 protein-coding gene protein-coding gene ENSG00000283697 8478 500761 chr14:22531102-22531131+ NoOverlap chr14 22531102 22531131 + 9.40167986229 10 0.896789501793 -0.0186099529266 9.42028981522 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22531101;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22531102-22531131%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22531102-22531131&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.2637143656 0.313917935075 1.0104390268 23000052 23000081 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23000051;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22531102-22531131%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23000052-23000081&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTFGTGTKLQVIPSESNFLCFPLPCVVFSQTVTFGAHK None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.0 6.62203 0.9586 -3.36045 9.98248 0.258512518376 0.95922308683 6699 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 7.66033 0.3676 -5.81582 13.47615 0.160392189686 0.83710675225 7552 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390524.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 8511 479598 chr10:129845406-129845477+ NoOverlap chr10 129845406 129845477 + 4.82521243642 24 0.871197960377 1.17200823128 3.65320420514 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129845405;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129845406-129845477%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129845406-129845477&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.429039923543 0.313383111172 0.742253219529 131643670 131643741 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131643669;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129845406-129845477%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131643670-131643741&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSNDFCRCFMTNVQFYYYEYSFLYSGRQR Same 481503 chr10:129845406-129845477+ 8408 8408 103 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.347222222222 0.935064935065 1.21201666667 0.9853 -5.1362 6.34821666667 0.250696469814 0.879144035259 6955 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -6.5454375 0.9094 -12.8708083333 6.32537083333 0.0317632253572 0.663954077765 23225 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000614150.1,ENST00000355311.9 NC,AntiCDSintron not annotated potentially spurious 8549 534734 chr2:110345359-110345403+ NoOverlap chr2 110345359 110345403 + 6.32393343449 15 0.663030950383 -2.18176670869 8.50570014318 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110345358;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110345359-110345403%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110345359-110345403&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.183433398928 0.312572635532 1.03680336778 111102936 111102980 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111102935;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110345359-110345403%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111102936-111102980&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PSSPPPPGLSTPSGPCQPGYFCAEGASSPSPK Same 536086 chr2:110345359-110345403+ 9149 9149 -600 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.711111111111 0.194805194805 8.26609333333 0.7792 -0.76128 9.02737333333 0.320594861058 0.95405791758 5188 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 26.2284666667 0.5938 1.97320666667 24.25526 0.933476280905 1.02954956373 1925 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 8554 585610 chr8:144049161-144049202+ NoOverlap chr8 144049161 144049202 + 7.97991422244 14 0.652518283578 0.524099877902 7.45581434454 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144049160;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144049161-144049202%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144049161-144049202&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.277186050531 0.312413465412 0.975560663493 145104062 145104103 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145104061;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144049161-144049202%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145104062-145104103&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CTMQSPPDWSPATDAPRPSPFPPPALHALHGLAR Same 586548 chr8:144049161-144049202+ 9214 9214 -660 0 591 144049161 144051191 902 902;1476;2944;3502;6411;8419;8554;19953;27554 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144049161-144051191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.857142857143 1.13076923077 15.2524428571 0.8448 1.95884285714 13.2936 0.569162703367 1.02315801783 2721 822 822;1234;1275;2096;2721;3466;4144;4232;11683 15.9292428571 0.6377 -7.5122 23.4414428571 0.805425942391 1.04534800013 2452 1010 1010;1721;1924;2036;2359;2452;2682;3550;3684 0.0 0.278840645225 chr16:68370859-68372181- ENST00000561181.5 NC pseudogene unitary pseudogene (ENSG00000204791) 8562 466063 chr1:86505825-86505857+ NoOverlap chr1 86505825 86505857 + 11.0344274261 11 0.636856086616 -4.16758168827 15.2020091144 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;86505824;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A86505825-86505857%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A86505825-86505857&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.29902548211 0.312267294668 0.985844570063 86971508 86971540 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;86971507;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A86505825-86505857%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A86971508-86971540&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DAFANLFNSIMTLSFPHTIITDNGPYYLSAQFAYALQLWYIQHK Same 467923 chr1:86505825-86505857+ 9026 9026 -464 0 374 86505354 86506381 521 521;1954;4201;8562;51150 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:86505354-86506381&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.272727272727 0.0 3.63009090909 0.1321 -3.64544545455 7.27553636364 0.0350453716553 0.829051477587 26963 19199 19199;22222;23228;25766;26963 20.9011090909 0.1966 -3.08832727273 23.9894363636 0.253504660253 1.02598766411 5167 2191 2191;3220;3562;5167;30592 0.0 0.0 not annotated fragments of a reteroviral ORF 8567 595161 chrX:49879412-49879462+ NoOverlap chrX 49879412 49879462 + 6.81591782149 17 0.736995498589 1.90072349853 4.91519432296 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;49879411;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A49879412-49879462%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A49879412-49879462&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.374324543986 0.3121755379 0.805627173858 49644015 49644065 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;49644014;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A49879412-49879462%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A49644015-49644065&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGDTPGLRGPRAATPSGRPSPASR Same 595803 chrX:49879412-49879462+ 8591 8591 -24 0 490 49878962 49880307 724 724;6474;8567;14080;37462 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:49878962-49880307&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.823529411765 0.708333333333 4.32947647059 0.8301 3.4593 0.870176470588 0.0552991379498 0.35516492583 22106 671 671;7761;13348;22106;48276 -2.86867647059 0.5713 -3.36067058824 0.491994117647 -0.0154179978072 0.389353871976 44633 433 433;14478;35334;44633;49684 0.0 0.0963400299145 chrX:55486804-55488939- pseudo-exon USP27X pseudogenic sequence upstream of ATG 8583 585819 chr8:10496192-10496221- NoOverlap chr8 10496192 10496221 - 9.99180986881 10 0.837239642939 0.198059999943 9.79374986887 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;10496191;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10496192-10496221-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A10496192-10496221&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.282490055798 0.311938063802 1.01123298772 10353702 10353731 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;10353701;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10496192-10496221-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A10353702-10353731&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSLVCVPQYPFLLGLGSQMLLATMFTVDKPNC Same 586756 chr8:10496192-10496221- 8380 8380 203 0 31 10496192 10498809 31 31;380;667;765;1871;8583 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:10496192-10498809&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.566666666667 0.0 10.32734 0.8432 -0.48013 10.80747 0.264009435389 0.973638485769 6527 61 61;238;682;997;2094;6527 10.32734 0.2649 -0.48013 10.80747 0.0990557647488 0.73224442383 11606 24 24;1365;2041;2153;3654;11606 0.0 0.0 ENST00000521149.2 NCintron protein-coding gene protein-coding gene ENSG00000253649 8610 553203 chr3:120366732-120366758+ NoOverlap chr3 120366732 120366758 + 6.89036664036 9 0.931553114112 -4.02429990636 10.9146665467 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;120366731;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120366732-120366758%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A120366732-120366758&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0119223223631 0.311491078868 1.04305469861 120085579 120085605 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;120085578;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A120366732-120366758%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A120085579-120085605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSVDQAEISEGTLSLLLR None NA NA 0 11 120366477 120368084 11 11;568;909;1181;1188;1356;8610 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:120366477-120368084&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.37037037037 0.0 7.80625555556 0.9336 -12.2542888889 20.0605444444 0.344125264088 0.971478261492 4768 1029 1029;1399;2108;2270;2767;2983;4768 20.0948888889 0.4887 -15.5339777778 35.6288666667 0.587806004522 1.02082253511 3204 683 683;1974;2462;2559;2585;3123;3204 0.0 0.0 ENST00000494869.1 NC pseudogene unitary pseudogene ENSG00000240661 8628 518108 chr17:48625886-48625948+ NoOverlap chr17 48625886 48625948 + 5.14194761288 21 0.720551359325 -0.174528533504 5.31647614638 ENST00000311177.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48625885;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48625886-48625948%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48625886-48625948&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.291942033132 0.311214062411 0.89418211212 46703248 46703310 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46703247;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48625886-48625948%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46703248-46703310&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALFEQLPRRAQQRLRLHRRLALPRGR Same 519509 chr17:48625886-48625948+ 8826 8826 -198 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.825396825397 0.703349282297 -4.0608047619 0.9039 -7.40610952381 3.3453047619 -0.0452658602436 0.584267169955 69346 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -23.1051142857 0.8727 -30.8978142857 7.7927 -0.0295516615826 0.489554085048 56732 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000311177.6,ENST00000567101.2 AntiCDS,AntiNCintron not annotated putative regulatory region 8635 570020 chr5:176153725-176153838- NoOverlap chr5 176153725 176153838 - 5.97778943495 38 0.279697871366 1.09799213002 4.87979730493 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;176153724;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176153725-176153838-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A176153725-176153838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.133086954507 0.31109318927 0.95365619167 175580728 175580841 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;175580727;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176153725-176153838-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A175580728-175580841&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LCLILTGEYLPEEWKLPSACGVGTASQTRLHVLNAADPWLQVSIGVLR Same 571038 chr5:176153725-176153838- 9817 9817 -1182 0 6143 176146963 176156969 Best 8635 8635;13435;25692;32992;35007;45549;51680 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:176146963-176156969&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.631578947368 0.441176470588 18.2295315789 0.6994 3.38787368421 14.8416578947 1.04582381084 1.01586770872 306 17 17;170;306;1893;3127;16509;16641 26.5643657895 0.4255 4.28307368421 22.2812921053 1.12432405459 1.04792131039 11 Best 11 11;134;388;800;3031;3612;16194 0.985154938727 chr18:13057585-13057733+ 0.980471469121 chr18:13057585-13057733+ ENST00000515403.5,ENST00000510029.1 NCintron,AntiNCintron pseudogene centrosomal protein 192kDa (CEP192) pseudogene (ENSG00000283559) 8678 500295 chr13:99723905-99723991- NoOverlap chr13 99723905 99723991 - 3.01318959327 29 0.997989492322 -2.93989307922 5.95308267248 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;99723904;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A99723905-99723991-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A99723905-99723991&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.109700029813 0.309964556169 0.997834867666 100376159 100376245 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;100376158;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A99723905-99723991-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A100376159-100376245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ERSSDNGEDSQVTRRRIEKSTQVSFLSALDEK Same 502308 chr13:99723905-99723991- 11576 11576 -2898 0 1155 99723905 99724160 1756 1756;8678;28058 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:99723905-99724160&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.471264367816 0.416267942584 -0.200362068966 0.9961 -6.54189655172 6.34153448276 0.233578208429 0.901583872969 7507 2481 2481;7507;11947 -6.52555517241 0.9241 -17.8549344828 11.3293793103 0.139746400348 0.884678233379 8545 3720 3720;8545;16588 0.0 0.0 ENST00000339105.8 AntiCDSintron not annotated putative regulatory region 8695 477236 chr10:38210652-38210798+ NoOverlap chr10 38210652 38210798 + 3.15812245194 49 0.366753705373 -2.21625102479 5.37437347672 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;38210651;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38210652-38210798%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A38210652-38210798&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0540256809703 0.309568022402 1.02188681064 38499580 38499726 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;38499579;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38210652-38210798%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A38499580-38499726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NELEREFLKLINYNISVTGSVYSRFYFNLRTMAHDNSLYSLVYLLDRER Same 479129 chr10:38210652-38210798+ 8595 8595 100 0 6185 38199286 38210798 Best 8695 8695;24334 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:38199286-38210798&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.374149659864 0.584880636605 8.87669795918 0.9393 -3.41446122449 12.2911591837 1.0291763453 1.03797859645 490 Best 490 490;929 29.2487510204 0.9027 5.76159795918 23.4871530612 1.02727813289 1.04245823528 658 103 103;658 0.964621452614 chr2:207750957-207751119+ 0.909763241058 chr2:207750957-207751119+ ENST00000423162.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 8709 545768 chr20:53171298-53171339- NoOverlap chr20 53171298 53171339 - 7.53862122553 14 0.949294270237 1.88388581361 5.65473541192 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;53171297;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A53171298-53171339-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A53171298-53171339&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.366135669651 0.309204562378 0.840338680592 51787837 51787878 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;51787836;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A53171298-53171339-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A51787837-51787878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NVRFKMENRHCYRHI Same 547179 chr20:53171298-53171339- 8799 8799 -90 0 6194 53171298 53178229 Best 8709 8709;9266 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:53171298-53178229&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.380952380952 1.33333333333 -0.0697785714286 0.9913 -3.43877142857 3.36899285714 0.00566579581305 0.55157222406 38747 3880 3880;38747 -1.56422857143 0.6628 -5.47814285714 3.91391428571 0.0188465525053 0.509705380892 27382 5022 5022;27382 0.0 0.0 ENST00000432706.1,ENST00000371497.9 NCintron,AntiCDSintron not annotated potentially spurious 8711 479224 chr10:122624611-122624673+ NoOverlap chr10 122624611 122624673 + 7.04115246875 21 0.674775020255 4.39691433452 2.64423813423 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122624610;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122624611-122624673%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122624611-122624673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.473025630483 0.309135017196 0.571177413539 124384127 124384189 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124384126;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122624611-122624673%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124384127-124384189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVNGGDQCQGQVEVLYQVSWGTVYDDTNDANVVCRQLGR Same 481129 chr10:122624611-122624673+ 8772 8772 -61 0 465 122624536 122624832 670 670;999;1583;8711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122624536-122624832&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.603174603175 0.352941176471 14.7792428571 0.8545 5.90282380952 8.87641904762 0.737390554573 0.95994330347 1940 1100 1100;1284;1868;1940 58.301852381 0.9498 11.4409666667 46.8608857143 0.970324109586 1.02583961163 1573 507 507;1148;1284;1573 0.50808721137 chr10:122588944-122589267+ 0.264801380494 chr10:122613974-122614297+ ENST00000330163.8 CDSintron pseudo-exon DMBT1 pseudo_exon 8715 502531 chr14:94008609-94008641+ NoOverlap chr14 94008609 94008641 + 9.31824530526 11 0.785852112334 0.53010012074 8.78814518452 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;94008608;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A94008609-94008641%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A94008609-94008641&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.295302767652 0.309122173803 0.997640790379 94474955 94474987 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;94474954;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A94008609-94008641%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A94474955-94474987&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EIYFPSQEFMLDKMETVR Same 504434 chr14:94008609-94008641+ 8859 8859 -144 0 6195 94008609 94008641 Best 8715 8715 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:94008609-94008641&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.393939393939 0.0 4.18507272727 0.9273 -4.62685454545 8.81192727273 0.142639811918 0.920005373469 12087 Best 12087 12087 3.78181818182 0.3513 -5.81150909091 9.59332727273 0.0724106949737 0.71456646071 14799 Best 14799 14799 0.0 0.0 ENST00000359253.2 NC protein-coding gene protein coding gene ENSG00000175699 8717 552893 chr3:88059298-88059360+ NoOverlap chr3 88059298 88059360 + 4.32972851511 21 0.846005951019 -1.57731427465 5.90704278976 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88059297;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88059298-88059360%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88059298-88059360&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.237468459418 0.309096292974 0.947674291628 88108448 88108510 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88108447;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88059298-88059360%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88108448-88108510&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASTAAAAAQGLVRAGRREPHGGGRERPRGRTPR Same 553835 chr3:88059298-88059360+ 8606 8606 111 0 234 88059269 88059508 300 300;3037;8717 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88059269-88059508&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.714285714286 1.16666666667 -6.68327142857 0.875 -9.8898047619 3.20653333333 -0.0476770821377 0.557781570436 70294 1610 1610;14011;70294 -11.5233571429 0.4898 -17.6510285714 6.12767142857 -0.0196377016752 0.600625436549 47806 2728 2728;5623;47806 0.0 0.0 ENST00000473136.4,ENST00000462901.5 NC,AntiUTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 8720 493922 chr12:132115194-132115298+ NoOverlap chr12 132115194 132115298 + 2.49732564262 35 0.450988675626 -4.38322007315 6.88054571577 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132115193;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132115194-132115298%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132115194-132115298&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00485641685205 0.309081606313 1.06007875133 132599739 132599843 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132599738;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132115194-132115298%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132599739-132599843&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CQRPHLQVGHPGMGLQHLEVTSGVPLQQLMPTAQSICVPK Same 495913 chr12:132115194-132115298+ 8769 8769 -49 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.542857142857 0.0 11.2934942857 0.8618 -0.933411428571 12.2269057143 0.992486071169 1.05263603208 809 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 20.9569857143 0.7545 3.26037428571 17.6966114286 1.02729949114 1.01748808361 657 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.877647523653 chr12:131981489-131981596+ 0.911867370545 chr12:131981489-131981596+ ENST00000332441.7 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 8769 557412 chr3:164021465-164021752- NoOverlap chr3 164021465 164021752 - 2.54103747759 96 0.256815537499 -4.37021457815 6.91125205574 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;164021464;288;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164021465-164021752-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A164021465-164021752&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0662813423463 0.30790581255 1.06416122595 163739253 163739540 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;163739252;288;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164021465-164021752-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A163739253-163739540&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPPSESLLPISSSPPTHSCTDTLDHLQPHFPNISSKPLINPDDQLFIDGSSSGAPGSPQIAEYAEVTLDYVTEAKV*PPGTSSQKAELLALTRVLTLSKKKRVNIYKDSKNAYHILRFHATIWQERGFLSTKETPII*GPTIYQLFQASHLPTEAGVIHVK Same 558381 chr3:164021465-164021752- 3533 3533 5236 35 515 164020256 164021752 771 771;1003;8769;19116;25346;28404;49038 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:164020256-164021752&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.451388888889 0.153969526864 -1.21820729167 0.0218 -2.44264583333 1.22443854167 -0.022939088714 0.484541800852 56143 19419 19419;24940;25790;26229;28407;40126;56143 -1.21820729167 0.0068 -2.44264583333 1.22443854167 -0.0169864420613 0.56037357553 45789 13932 13932;30001;32108;33417;45789;56644;69776 0.0 0.0 not annotated fragments of a reteroviral ORF 8776 493924 chr12:132118885-132118950+ NoOverlap chr12 132118885 132118950 + 8.17319552194 22 0.386675405925 3.53416357257 4.63903194937 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132118884;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132118885-132118950%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132118885-132118950&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.197709518205 0.307687862641 0.817156401126 132603430 132603495 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132603429;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132118885-132118950%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132603430-132603495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QRQQQYDPSTGPPVQNASSLHTPGGCPSR Same 495915 chr12:132118885-132118950+ 9878 9878 -1102 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.681818181818 0.679012345679 19.1227863636 0.8453 9.7367 9.38608636364 0.814487164417 0.957843355128 1613 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 50.4415909091 0.8623 26.0729409091 24.36865 0.995574907796 0.989080647604 1181 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 1.05402301222 chr12:131982093-131982478+ 0.984355989039 chr12:131982093-131982478+ ENST00000475841.2,ENST00000332441.7 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 8780 572466 chr6:108168640-108168666+ NoOverlap chr6 108168640 108168666 + 8.46552192834 9 0.769388706628 -5.08613337411 13.5516553024 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108168639;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108168640-108168666%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108168640-108168666&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.115307342515 0.307600863138 1.00506211334 108489844 108489870 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108489843;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108168640-108168666%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108489844-108489870&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TAAPAGGAAAFRPFPDR Same 573493 chr6:108168640-108168666+ 8836 8836 -56 0 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.888888888889 0.944055944056 1.90591111111 0.9183 -19.6786111111 21.5845222222 0.181992478474 0.954546919058 9613 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 1.43862222222 0.3905 -25.1733111111 26.6119333333 0.192920266946 1.07256886249 6446 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000368983.3 CDSintron not annotated putative regulatory region 8782 578144 chr7:57192268-57192327+ NoOverlap chr7 57192268 57192327 + 6.06256007534 20 0.373682001984 -5.08632483035 11.1488849057 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57192267;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57192268-57192327%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57192268-57192327&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0489345319524 0.307577943695 1.02395346558 57259975 57260034 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57259974;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57192268-57192327%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57259975-57260034&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAQLLILVTILVLGLTHE*TQKGLD Same 579183 chr7:57192268-57192327+ 8457 8457 325 6 65 57190149 57192692 73 73;718;767;5573;6277;8782;10566 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57190149-57192692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 18.92313 0.8038 -11.245155 30.168285 0.702457300382 1.04125047855 2083 832 832;1401;1806;1937;2083;2177;2604 50.375015 0.9278 -18.927275 69.30229 0.962493989373 0.996163373442 1670 1370 1370;1632;1670;1726;2011;2050;2238 0.833604837615 chrM:10059-10404+ 0.946401919278 chrM:10059-10404+ pseudogene MTCO3P4 mitochondrially encoded cytochrome c oxidase III pseudogene 4 (ENSG00000228851) 8793 632681 chr12:122226015-122226056- Extension chr12 122226015 122226056 - 8.87384989432 14 0.759636617293 5.08475000518 3.78909988914 chr12:122225973-122226056- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;122226014;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A122226015-122226056-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A122226015-122226056&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.422812732486 0.307273603381 0.608488944249 122710562 122710603 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;122710561;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A122226015-122226056-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A122710562-122710603&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LRHFRRVRLASARCTMAALK Same 633337 chr12:122226015-122226056- 8669 8669 124 0 223 122226015 122226567 279 279;8793;16637 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:122226015-122226567&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.714285714286 1.5 1.81618571429 0.8939 2.1744 -0.358214285714 -0.0153971352098 0.236921338436 50874 882 882;50874;72254 1.19821428571 0.403 2.07356428571 -0.87535 -0.0131789357954 0.316358241285 42979 1045 1045;29503;42979 0.0 0.112867171514 chr3:196947157-196948685- ENST00000353548.10,ENST00000413918.5,ENST00000342392.3,ENST00000485724.1,ENST00000535844.1 Extension5p,UTR5,NC,UTR5intron,NCintron protein-coding gene protein-coding gene ENSG00000284934 8864 572468 chr6:108171115-108171165+ NoOverlap chr6 108171115 108171165 + 3.60225888035 17 0.826907938731 -4.93001177732 8.53227065767 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108171114;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108171115-108171165%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108171115-108171165&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0368628572025 0.305787084131 1.04867341687 108492319 108492369 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108492318;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108171115-108171165%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108492319-108492369&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPNFPRSRKAVEGRTAAR Same 573495 chr6:108171115-108171165+ 8775 8775 89 0 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.686274509804 0.833333333333 0.860805882353 0.9787 -4.66151176471 5.52231764706 0.106579131684 0.76006818725 15192 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 -3.68360588235 0.4236 -11.2639705882 7.58036470588 0.0448793358455 0.680856762783 19799 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000368983.3,ENST00000426403.1 CDSintron,UTR5intron not annotated putative regulatory region 8869 698076 chr3:150891061-150891105- Extension chr3 150891061 150891105 - 6.35751357079 15 0.865400167849 -0.101466870308 6.45898044109 chr3:150890929-150891105- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;150891060;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A150891061-150891105-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A150891061-150891105&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.304541739128 0.305577358739 0.93317227178 150608848 150608892 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;150608847;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A150891061-150891105-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A150608848-150608892&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VMFIPMVSYSCLLHYSLCEISKKEQEQALAAALAGILWAAGAAQK Same 698706 chr3:150891061-150891105- 8554 8554 315 0 342 150891061 150905397 469 469;1530;2695;7586;8869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:150891061-150905397&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.488888888889 0.0 9.21468666667 0.985 -10.5321666667 19.7468533333 0.709982040236 0.966489744996 2046 200 200;1473;2046;2052;3618 20.5139866667 0.7709 -6.98916666667 27.5031533333 0.948268878846 1.05450033224 1832 250 250;1155;1164;1832;2392 0.0 0.0 ENST00000565169.1,ENST00000469268.1 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000214237 8891 530521 chr19:28706953-28707024- NoOverlap chr19 28706953 28707024 - 4.03334168593 24 0.485936903944 -3.70637077877 7.7397124647 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28706952;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28706953-28707024-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28706953-28707024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0483196995999 0.305019430838 1.05148046189 29197860 29197931 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29197859;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28706953-28707024-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29197860-29197931&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FFGDPLSVINACYEGDTVIVCPDHFVVCGIMECSVDSIELEGGYGR Same 531985 chr19:28706953-28707024- 8964 8964 -73 0 1328 28700946 28722771 1997 1997;8891;9090;18927;37310;39699 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28700946-28722771&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.402777777778 0.363636363636 5.718225 0.7803 -3.86914166667 9.58736666667 0.477303648305 1.03879695455 3295 1227 1227;2244;3295;3647;4332;8998 18.6216833333 0.708 -0.488916666667 19.1106 0.96013288479 1.02025743311 1695 214 214;954;1173;1175;1695;2440 0.772905236242 chr16:46603539-46603659- 0.921723839431 chr16:46603539-46603659- ENST00000590072.1 NCintron not annotated potentially spurious 8893 560163 chr4:144872963-144873004+ NoOverlap chr4 144872963 144873004 + 6.09515709536 14 0.870199130236 -1.54875714651 7.64391424188 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;144872962;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A144872963-144873004%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A144872963-144873004&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.222339523261 0.304959868898 1.00158036319 145794115 145794156 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;145794114;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A144872963-144873004%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A145794115-145794156&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MGRWGRGQENRMKLFSGSVPTGLPLSSALVIYSMGGK Same 561152 chr4:144872963-144873004+ 8624 8624 269 0 6323 144872963 144873004 Best 8893 8893 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:144872963-144873004&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52380952381 0.0 -0.66805 0.9978 -5.87612857143 5.20807857143 0.0219618859386 0.704186607323 31831 Best 31831 31831 -12.6643642857 0.5507 -19.8171642857 7.1528 -0.029964370757 0.580432579065 57084 Best 57084 57084 0.0 0.0 ENST00000512833.1 NC not annotated potentially spurious 8964 500747 chr14:22490520-22490546+ NoOverlap chr14 22490520 22490546 + 14.2572331429 9 0.869084373914 7.4652776387 6.79195550415 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22490519;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22490520-22490546%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22490520-22490546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.33971440436 0.303406152223 0.669309495989 22959508 22959534 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22959507;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22490520-22490546%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22959508-22959534&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTFGTGTRLTIIPSK None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.0 17.9511888889 0.9819 3.40918888889 14.542 0.735916227746 0.980964593116 1948 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 21.4693888889 0.4191 2.9229 18.5464888889 0.440337069269 0.913286504079 3777 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390489.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 9001 664473 chr19:10050065-10050148+ Extension chr19 10050065 10050148 + 4.50594641455 28 0.619183315349 -0.0163571664265 4.52230358097 chr19:10049999-10050148+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;10050064;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A10050065-10050148%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A10050065-10050148&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.239717146798 0.3024622165 0.87110245583 10160741 10160824 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;10160740;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A10050065-10050148%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A10160741-10160824&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETLCSASKPGAPSHQVVVVPPTSSKIVHFVLLPLETGKVDVEVK Same 665088 chr19:10050065-10050148+ 9605 9605 -604 0 68 10044071 10052967 77 77;2165;5660;9001 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:10044071-10052967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.292173913043 7.90992142857 0.815 -1.58303928571 9.49296071429 0.674549032692 1.04361155328 2188 16 16;1747;2188;3282 30.6155071429 0.7278 1.40078571429 29.2147214286 1.04995818986 1.04692209592 327 Best 327 327;682;1174;2985 0.0 0.293476331658 chr19:6697344-6697556- ENST00000495140.1 NCintron pseudogene C3P1 transcribed unprocessed pseudogene (ENSG00000167798) 9007 595547 chrX:119574777-119574809+ NoOverlap chrX 119574777 119574809 + 7.55376354131 11 0.77865401555 -2.64695429802 10.2007178393 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;119574776;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A119574777-119574809%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A119574777-119574809&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.175394758099 0.302407723266 1.04427197677 118708740 118708772 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;118708739;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A119574777-119574809%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A118708740-118708772&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRGLRAGAQGGSR Same 596189 chrX:119574777-119574809+ 9174 9174 -167 0 274 119574523 119574809 359 359;9007 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:119574523-119574809&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.818181818182 0.707142857143 3.60101818182 0.8609 -6.89736363636 10.4983818182 0.123760962063 0.992850561333 13630 254 254;13630 -1.9697 0.4267 -15.1797636364 13.2100636364 0.0708960092285 0.847359699732 15043 1324 1324;15043 0.0 0.0 ENST00000628549.1,ENST00000346330.6,ENST00000630695.2,ENST00000469205.2 UTR5,CDSintron,UTR5intron,NCintron under investigation UBE2A potential non-ATG start 9030 473852 chr1:120558900-120558959- NoOverlap chr1 120558900 120558959 - 4.05567495078 20 0.702469672694 -3.23440510631 7.29008005708 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;120558899;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120558900-120558959-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A120558900-120558959&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0951844587964 0.301963029117 1.02401215342 144932465 144932524 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;144932464;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120558900-120558959-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A144932465-144932524&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEAAGGKRGRRAAVPSGAAPLAAGGR Same 475731 chr1:120558900-120558959- 9496 9496 -466 0 332 120557034 120558959 455 455;1179;8132;9030 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:120557034-120558959&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.8 1.0 -0.2328 0.8065 -2.324855 2.092055 -0.0095064685542 0.488356510326 46807 909 909;960;17149;46807 -9.724995 0.3741 -8.85512 -0.869875 -0.0396826809095 0.33370534386 64986 1642 1642;2295;10626;64986 0.0 0.0 ENST00000612480.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 9038 543976 chr20:52493458-52493499+ NoOverlap chr20 52493458 52493499 + 7.64848558605 14 0.847826134345 2.38255014111 5.26593544494 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;52493457;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A52493458-52493499%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A52493458-52493499&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.378837483284 0.301723465566 0.799281006741 51109997 51110038 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;51109996;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A52493458-52493499%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A51109997-51110038&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SRAACAQLRQGSSLAK Same 545367 chr20:52493458-52493499+ 8616 8616 422 0 497 52493458 52501022 737 737;9038 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:52493458-52501022&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.497041420118 0.123178571429 0.9971 -7.7468 7.86997857143 0.102075742376 0.894170570837 15619 2723 2723;15619 -3.79038571429 0.9116 -12.4060142857 8.61562857143 0.0303811166125 0.698412671471 23639 4316 4316;23639 0.0 0.0 ENST00000454600.1,ENST00000416237.1 NCintron,AntiNCintron not annotated putative regulatory region 9039 552946 chr3:100208048-100208074+ NoOverlap chr3 100208048 100208074 + 9.01986658573 9 0.746898603799 -5.63112245003 14.6509890358 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;100208047;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A100208048-100208074%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A100208048-100208074&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.140207768623 0.301722425344 0.98641568244 99926892 99926918 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;99926891;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A100208048-100208074%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A99926892-99926918&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTKPPNWPKPIYDLDK Same 553898 chr3:100208048-100208074+ 9058 9058 -19 0 354 100208048 100211682 486 486;1802;4544;9039 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:100208048-100211682&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.0 18.5793111111 0.9084 -9.64717777778 28.2264888889 0.447952669334 0.960448525316 3530 241 241;657;2616;3530 58.2630777778 0.9706 -3.94535555556 62.2084333333 1.00377133757 0.991741789728 1055 Best 1055 1055;1450;1488;1682 0.0 0.200601296282 chr14:61280092-61281147- pseudogene TMEM30C converted to a transcribed unitary pseudogene TMEM30CP (ENSG00000235156) due to disablement of the longer isoform, lack of expression data for last 4 exons and PMID:17258408. 9048 570128 chr5:177632676-177632741- NoOverlap chr5 177632676 177632741 - 6.55953188105 22 0.573426413367 2.4821272953 4.07740458575 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;177632675;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177632676-177632741-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A177632676-177632741&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.315501557482 0.30158356901 0.764941381856 177059677 177059742 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;177059676;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177632676-177632741-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A177059677-177059742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ANTPILTSSIHTILQQDFIDLTREIRPRTKDRSGLCD Same 571146 chr5:177632676-177632741- 9472 9472 -424 0 413 177631373 177632741 581 581;682;928;2345;9048;9086 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:177631373-177632741&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.439393939394 0.323529411765 6.21928181818 0.6427 3.62932727273 2.58995454545 0.127800886118 0.551225087578 13259 2235 2235;3960;4414;7404;13259;17105 4.45764545455 0.327 0.604322727273 3.85332272727 0.109882104847 0.566054486161 10642 2652 2652;4964;5610;7150;10642;13371 0.980706970308 chr5:176289654-176290955+ 1.03961922259 chr5:176289654-176290955+ ENST00000515045.1,ENST00000500444.2 NC,NCintron pseudogene extension SUMO interacting motifs containing 1 (SIMC1) pseudogene significantly rebuilt (ENSG00000246596) 9069 489042 chr11:76716336-76716365- NoOverlap chr11 76716336 76716365 - 7.13357005119 10 0.81020218204 -3.9197699964 11.0533400476 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;76716335;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76716336-76716365-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A76716336-76716365&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0924692059504 0.301252497473 1.04249477321 76427380 76427409 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;76427379;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76716336-76716365-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A76427380-76427409&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPTNVALYQAR Same 491031 chr11:76716336-76716365- 8880 8880 189 0 85 76712306 76719866 98 98;1554;2355;2775;9069;9723;10637;30796 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:76712306-76719866&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.38961038961 12.53589 0.9879 -3.46808 16.00397 0.642243073012 1.02261619463 2338 88 88;186;1371;1479;2258;2338;2434;2689 17.57641 0.6194 -11.9459 29.52231 0.77974725108 1.05149057438 2549 838 838;995;1128;1187;1347;1571;1780;2549 0.0 0.0813236466718 chr17:8007931-8008032+ ENST00000525328.1 NCintron pseudogene extension GUCY2EP extended [ENSG00000204529] 9086 570124 chr5:177631532-177631672- NoOverlap chr5 177631532 177631672 - 3.06134463339 47 0.516518215863 -1.11951275138 4.18085738478 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;177631531;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177631532-177631672-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A177631532-177631672&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.101223703176 0.300897294285 0.927001891375 177058533 177058673 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;177058532;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A177631532-177631672-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A177058533-177058673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DIPHLPGDRPDFTQNDVQNCDMPMDISAASPPSCSPSPQSETPLEKVPWLSVMETPARKEISLSEPAKPGSAHVQSR Same 571142 chr5:177631532-177631672- 9736 9736 -650 0 413 177631373 177632741 581 581;682;928;2345;9048;9086 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:177631373-177632741&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.503546099291 0.117109634551 -0.710714893617 0.6384 -5.57283617021 4.8621212766 0.0893763988686 0.849012490194 17105 2235 2235;3960;4414;7404;13259;17105 -5.89970212766 0.3671 -12.7502723404 6.85057021277 0.0832026122221 0.77297466612 13371 2652 2652;4964;5610;7150;10642;13371 1.07335425691 chr5:176289654-176290955+ 0.799988051085 chr5:176289654-176290955+ ENST00000499314.6,ENST00000500444.2 NC,NCintron pseudogene extension SUMO interacting motifs containing 1 (SIMC1) pseudogene significantly rebuilt (ENSG00000246596) 9090 530519 chr19:28700946-28701020- NoOverlap chr19 28700946 28701020 - 6.83745199203 25 0.456702525368 2.84870796829 3.98874402374 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28700945;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28700946-28701020-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28700946-28701020&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.239705176372 0.3007904541 0.781434271052 29191853 29191927 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29191852;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28700946-28701020-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29191853-29191927&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IVLPCEVA*GTARTFLMKNLDLHGDK Same 531983 chr19:28700946-28701020- 9821 9821 -731 8 1328 28700946 28722771 1997 1997;8891;9090;18927;37310;39699 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28700946-28722771&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.44 0.288461538462 13.364436 0.6243 9.78066 3.583776 0.435885341751 0.645334045107 3647 1227 1227;2244;3295;3647;4332;8998 24.228432 0.4768 15.198924 9.029508 0.811837962213 0.745421996281 2440 214 214;954;1173;1175;1695;2440 1.04918914846 chr16:46595552-46595670- 1.10670687617 chr16:46595552-46595670- ENST00000592347.5 NCintron not annotated potentially spurious 9104 514150 chr16:50391357-50391410- NoOverlap chr16 50391357 50391410 - 6.422161147 18 0.790474979443 2.42460545235 3.99755569465 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;50391356;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A50391357-50391410-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A50391357-50391410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.416046254212 0.300491149307 0.714984128125 50425268 50425321 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;50425267;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A50391357-50391410-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A50425268-50425321&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APSPIIMPARLSSPRAQAESLLLYFSLFSVSSAFHAR Same 515802 chr16:50391357-50391410- 8866 8866 238 0 6446 50386980 50391447 Best 9104 9104;25045;26626;71071 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:50386980-50391447&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 1.25 8.11096111111 0.979 -1.21125555556 9.32221666667 0.602135771187 0.989476432197 2539 Best 2539 2539;8394;15399;20670 1.15731111111 0.534 -13.0992666667 14.2565777778 0.313767447724 0.937112781445 4491 Best 4491 4491;17207;30914;55618 0.0 0.0 ENST00000566876.1 NCintron not annotated potentially spurious 9107 544194 chr20:59146082-59146132+ NoOverlap chr20 59146082 59146132 + 6.62981173571 17 0.819149174891 2.46514736204 4.16466437368 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;59146081;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A59146082-59146132%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A59146082-59146132&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.415007646881 0.300393807763 0.722029080467 57721137 57721187 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;57721136;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A59146082-59146132%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A57721137-57721187&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QTISPASAIKPEPTPGQAAHLPPVSLCHPR Same 545586 chr20:59146082-59146132+ 8784 8784 323 0 3150 59146082 59146369 4380 4380;9107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:59146082-59146369&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.607843137255 0.671052631579 5.45908823529 0.9632 -0.626782352941 6.08587058824 0.321818575144 0.802390325872 5164 Best 5164 5164;37618 -0.5702 0.6006 -6.36992941176 5.79972941176 0.0843054223983 0.613279317352 13225 Best 13225 13225;44984 0.0 0.0 ENST00000610729.1 NCintron not annotated potentially spurious 9138 534692 chr2:109971618-109971659+ NoOverlap chr2 109971618 109971659 + 9.92147851842 14 0.427405203326 -0.549492759364 10.4709712778 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;109971617;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109971618-109971659%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A109971618-109971659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.179168179952 0.299586573138 1.03880315114 110729195 110729236 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110729194;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A109971618-109971659%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110729195-110729236&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFQSLQNTLPNILYVFYCSCSVC Same 536044 chr2:109971618-109971659+ 9353 9353 -215 0 674 109963466 109974092 1038 1038;1288;1607;3960;4614;5824;6691;9138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:109963466-109974092&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 15.3846214286 0.5402 -2.42781428571 17.8124357143 0.372941449455 1.00587788823 4366 1343 1343;1741;2554;2750;2805;2859;2974;4366 43.4764428571 0.7222 1.65515714286 41.8212857143 1.03533415927 1.00610154338 552 119 119;225;546;552;1151;1223;1320;1375 0.0 0.0 ENST00000454928.5 NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000186148) 9158 577934 chr7:37796513-37796542+ NoOverlap chr7 37796513 37796542 + 10.6577801704 10 0.903196765087 2.94555008411 7.71223008633 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;37796512;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796513-37796542%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A37796513-37796542&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.318774171226 0.299093731479 0.899624085141 37836115 37836144 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;37836114;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A37796513-37796542%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A37836115-37836144&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALLFGWWVASFLSIFFFFLQYGIDPSYSEQRCFEFCKDLNHR Same 578973 chr7:37796513-37796542+ 8306 8306 852 0 34 37796070 37796888 35 35;91;149;575;1403;9158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:37796070-37796888&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.366666666667 1.0 6.606 0.9482 1.59629 5.00971 0.141575979339 0.633557000653 12157 34 34;142;466;1005;2248;12157 11.84579 0.5721 -0.68933 12.53512 0.373343533572 0.788914050533 4101 146 146;436;833;961;1880;4101 0.0 0.33988504342 chr7:37740394-37741311+ ENST00000476620.1,ENST00000461610.5 UTR5intron,NCintron pseudogene unitary pseudogene ENSG00000283444 9174 483223 chr11:1078131-1078235+ NoOverlap chr11 1078131 1078235 + 5.44029435515 35 0.537499046311 2.71457142958 2.72572292558 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1078130;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1078131-1078235%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1078131-1078235&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.351299025537 0.298808489001 0.709357809384 1078275 1078379 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1078274;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1078131-1078235%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1078275-1078379&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASPGVLFSPLEFGNMQKINQPDVVCEDPEEEVAPASCSEHVSPLGPGWGSWR Same 485153 chr11:1078131-1078235+ 9530 9530 -356 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.609523809524 0.51724137931 15.3493657143 0.9276 1.19879142857 14.1505742857 1.04873862279 1.02709854904 273 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 26.7829142857 0.8395 -2.25950571429 29.04242 1.02715881992 1.02846369406 661 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.11536261687 chr11:1163882-1163991+ 0.20162519101 chr11:1163882-1163991+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 9186 559055 chr4:56272449-56272475+ NoOverlap chr4 56272449 56272475 + 14.0558334986 9 0.941802090486 8.27224426799 5.78358923064 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;56272448;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56272449-56272475%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A56272449-56272475&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.344674575801 0.298496909798 0.582224856327 57138615 57138641 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;57138614;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56272449-56272475%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A57138615-57138641&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SYSHQSVSNGTFSSDEETLEDNLR Same 560040 chr4:56272449-56272475+ 8542 8542 644 0 370 56272320 56272475 514 514;9186 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:56272320-56272475&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.428571428571 13.9743666667 0.9683 7.79293333333 6.18143333333 0.435367705487 0.648554980878 3651 1129 1129;3651 26.2549222222 0.4873 16.7866 9.46832222222 0.452932709496 0.593257013093 3717 1727 1727;3717 0.0 0.0 ENST00000264229.10,ENST00000503618.1 UTR5,NC coding exon(s) KIAA1211 alternative first exon 9195 497301 chr12:121059542-121059586- NoOverlap chr12 121059542 121059586 - 2.78130653699 15 0.713929961089 -7.67926671704 10.460573254 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;121059541;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121059542-121059586-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A121059542-121059586&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.190383367335 0.298291592639 1.03893728189 121497345 121497389 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;121497344;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121059542-121059586-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A121497345-121497389&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSLQPQGDWKDEVKDAGH Same 499313 chr12:121059542-121059586- 8870 8870 325 0 1146 121053768 121059655 1742 1742;3390;7126;9195;12027;15420;18584 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:121053768-121059655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.0 7.34930666667 0.6069 -8.41628666667 15.7655933333 0.359538060579 1.02933669937 4538 2783 2783;4174;4538;6046;10102;15430;23561 9.82612666667 0.2604 -10.90582 20.7319466667 0.350702034638 1.03892605017 4226 2866 2866;2878;4226;4741;5525;5554;8163 0.0 0.210157415651 chr12:112907040-112907219+ pseudogene unitary pseudogene, orthlog of mouse 2'-5' oligoadenylate synthetase-like 2 (Oasl2) (ENSG00000283542) 9200 479629 chr10:129855388-129855426+ NoOverlap chr10 129855388 129855426 + 6.10456150999 13 0.736695013234 -3.34126907129 9.44583058128 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129855387;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129855388-129855426%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129855388-129855426&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.126120505778 0.298206092968 1.04782432516 131653652 131653690 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131653651;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129855388-129855426%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131653652-131653690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDSSSSLYQNNTLADNYWIAFKQFCLHTSKNTLDDGFYSR Same 481534 chr10:129855388-129855426+ 9501 9501 -301 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.307692307692 0.0 -1.75333076923 0.8837 -10.9860461538 9.23271538462 0.0383292445741 0.952697049604 26057 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -5.44587692308 0.7205 -17.7907692308 12.3448923077 0.0624265512203 0.82270066857 16412 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 9225 505812 chr14:105707321-105707383- NoOverlap chr14 105707321 105707383 - 3.60186183453 21 0.548746398689 -4.99755734946 8.59941918398 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105707320;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105707321-105707383-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105707321-105707383&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0163542523811 0.297648178417 1.05782191249 106173658 106173720 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106173657;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105707321-105707383-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106173658-106173720&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QEPSQGTTTFAVTSILRVAAEDWK None NA NA 0 543 105704391 105719646 823 823;838;1248;1547;1711;2216;9225;18253;35962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105704391-105719646&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.68253968254 0.552631578947 14.4007619048 0.8938 -8.1112952381 22.5120571429 0.85923790616 0.960404141445 1432 94 94;95;219;285;641;1432;1674;1887;5574 16.0358 0.6198 -21.5382809524 37.5740809524 0.956039722133 0.904150040746 1746 51 51;686;1709;1746;1937;2386;2922;3268;6181 0.0 0.0970238953467 chr17:55720666-55721070- ENST00000390547.3,ENST00000618756.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 9240 595944 chrX:153482727-153482765+ NoOverlap chrX 153482727 153482765 + 8.35764619937 13 0.556375630168 -2.16899249416 10.5266386935 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;153482726;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153482727-153482765%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A153482727-153482765&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.186723138209 0.297282072275 1.04468392154 152748185 152748223 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;152748184;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153482727-153482765%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A152748185-152748223&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AALQWLTAPLCPPAGLSQLLTLEVEGNQLRDR Same 596585 chrX:153482727-153482765+ 9755 9755 -515 0 1397 153481540 153486067 2093 2093;2101;2242;2901;9240;10410;14641;25631 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:153481540-153486067&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.615384615385 0.609375 7.71372307692 0.7877 -7.06557692308 14.7793 0.360155567524 1.04038292936 4527 1899 1899;2169;2617;3156;4527;4610;7126;15622 22.2474615385 0.7406 -14.7068153846 36.9542769231 0.981590137236 1.00117580714 1399 550 550;891;987;1399;1497;1593;2015;2812 0.0 0.243454326042 chr9:92505533-92505690- ENST00000370210.3 AntiUTR5intron pseudogene unitary pseudogene ENSG00000224963 9266 545769 chr20:53178194-53178229- NoOverlap chr20 53178194 53178229 - 6.19249153137 12 0.846884616363 -2.98137504856 9.17386657993 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;53178193;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A53178194-53178229-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A53178194-53178229&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.123682455263 0.29672113895 1.04134820218 51794733 51794768 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;51794732;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A53178194-53178229-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A51794733-51794768&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EVPSVMAEVRVASLSAASK Same 547180 chr20:53178194-53178229- 8945 8945 321 0 6194 53171298 53178229 8709 8709;9266 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:53171298-53178229&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 0.9 5.1339 0.9538 -13.7079166667 18.8418166667 0.41186424413 0.982229818181 3880 Best 3880 3880;38747 1.76636666667 0.5109 -16.245125 18.0114916667 0.264106228186 0.993410575203 5022 Best 5022 5022;27382 0.0 0.0 ENST00000432706.1,ENST00000371497.9 NC,AntiCDSintron not annotated potentially spurious 9274 482373 chr10:117551366-117551437- NoOverlap chr10 117551366 117551437 - 5.27074995637 24 0.919439993896 3.01459592829 2.25615402808 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117551365;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551366-117551437-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117551366-117551437&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.505859566406 0.296497990072 0.559336987092 119310877 119310948 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119310876;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551366-117551437-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119310877-119310948&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GALEWIAAL*AAPCSRR*RVMKMWRPEIQR Same 484300 chr10:117551366-117551437- 9391 9391 -117 15 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 0.964285714286 0.0363958333333 0.9894 -1.13238333333 1.16877916667 0.0296989953706 0.434264177118 28814 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -6.10476666667 0.8912 -4.15679166667 -1.947975 -0.0378701781301 0.325891051067 63615 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 not annotated putative regulatory region 9279 531720 chr19:48469701-48469757- NoOverlap chr19 48469701 48469757 - 6.41435264914 19 0.784465512603 3.18314218129 3.23121046785 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48469700;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469701-48469757-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48469701-48469757&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.450496164711 0.296442023695 0.629999017828 48972958 48973014 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48972957;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469701-48469757-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48972958-48973014&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EWFRPGLASTTPSRPSRRHRKQAQPKQWPGTPGFR Same 533195 chr19:48469701-48469757- 9095 9095 184 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.701754385965 0.811965811966 0.204794736842 0.841 -5.87367894737 6.07847368421 0.0759588657964 0.817322133081 18819 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -2.77493684211 0.4579 -12.1958947368 9.42095789474 0.11468481944 0.771508090018 10249 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.0 ENST00000325139.9,ENST00000427476.4,ENST00000595676.1,ENST00000391881.7 AntiUTR5,AntiCDSintron,AntiUTR5intron,AntiNCintron coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 9283 476440 chr1:244048135-244048215- NoOverlap chr1 244048135 244048215 - 6.04674820768 27 0.690432875845 4.32280002038 1.7239481873 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244048134;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048135-244048215-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244048135-244048215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.53449872094 0.296323539729 0.511889387546 244211437 244211517 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244211436;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048135-244048215-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244211437-244211517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WQQRRPSG*LGREKVKGARRRRRQLRWEGLVSR Same 478334 chr1:244048135-244048215- 9407 9407 -124 7 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.716049382716 0.818181818182 -2.20001111111 0.8833 -2.61611851852 0.416107407407 -0.0544270851078 0.372237423303 71897 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -9.69227407407 0.5939 -10.7407296296 1.04845555556 -0.0443075954572 0.443421307611 68304 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0610330553346 chr16:31466079-31466889+ not annotated putative regulatory region 9296 539489 chr2:88861529-88861555- NoOverlap chr2 88861529 88861555 - 13.1368444297 9 0.869306477455 4.63227793905 8.50456649065 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;88861528;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88861529-88861555-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A88861529-88861555&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.31903151956 0.295948077785 0.853501886837 89161041 89161067 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;89161040;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88861529-88861555-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A89161041-89161067&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NHCVCSFGQGTKLEIK None NA NA 0 10 88857382 88861919 10 10;114;2592;3402;9296 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:88857382-88861919&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.592592592593 0.0 19.1818444444 0.9858 -0.496011111111 19.6778555556 0.782744334125 0.981301565923 1739 79 79;1171;1739;3460;3823 20.7318666667 0.6115 -1.42395555556 22.1558222222 0.738242302195 0.990911681948 2681 216 216;1028;1387;2681;2825 0.0 0.0 ENST00000390241.3,ENST00000377423.5 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 9301 588821 chr9:35306035-35306085+ NoOverlap chr9 35306035 35306085 + 3.85521761459 17 0.890696933385 -4.25080599504 8.10602360964 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35306034;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35306035-35306085%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35306035-35306085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00169789846547 0.295827107892 1.03983579432 35306032 35306082 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35306031;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35306035-35306085%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35306032-35306082&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DASHSSSTFSFFSLSFLDQKKETSGEK Same 589764 chr9:35306035-35306085+ 9572 9572 -271 0 5 35300167 35307879 5 5;669;1004;1082;1090;2464;3976;4603;5133;9301;65975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35300167-35307879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 3.65568235294 0.9799 -8.64907058824 12.3047529412 0.441400201522 1.06199970417 3591 565 565;1736;1846;2357;2445;2557;2989;3035;3218;3591;8325 15.2104529412 0.6964 -5.43963529412 20.6500882353 0.822118814145 1.02836668391 2403 420 420;802;1067;1389;1934;2365;2375;2403;2753;3466;5635 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron coding exon(s) UNC13B cassette exon 9330 485272 chr11:67539375-67539425+ NoOverlap chr11 67539375 67539425 + 4.87356481131 17 0.602185630489 -4.04243526038 8.91600007169 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;67539374;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67539375-67539425%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A67539375-67539425&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0692035149525 0.295291158988 1.05243998894 67306846 67306896 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;67306845;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67539375-67539425%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A67306846-67306896&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PSSSSLTLPALQVSFTDHNLLDLLLAHQVLVR Same 487228 chr11:67539375-67539425+ 9753 9753 -423 0 418 67538911 67540581 590 590;7079;8327;9330;15109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:67538911-67540581&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.627450980392 0.220779220779 12.7546764706 0.9503 -6.01997647059 18.7746529412 0.809995635161 0.985108565613 1631 51 51;1631;1897;1917;5012 14.5705941176 0.3644 -6.82257058824 21.3931647059 0.596727244924 1.03937232039 3177 118 118;3030;3177;3475;4027 0.262298573787 chr11:67586389-67586577+ 0.396176968159 chr11:67586389-67586577+ pseudogene glutathione S-transferase pi 1 (GSTP1) unprocessed pseudogene (ENSG00000283257) 9378 538848 chr2:62090851-62090922- NoOverlap chr2 62090851 62090922 - 6.25640417635 24 0.289780270085 -4.43027090157 10.6866750779 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62090850;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62090851-62090922-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62090851-62090922&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0443652878573 0.29455675273 1.02541390533 62317986 62318057 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62317985;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62090851-62090922-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62317986-62318057&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSVVQLAGIGTIINNTRILPLGNR Same 540226 chr2:62090851-62090922- 10076 10076 -698 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.282352941176 0.2755 0.0697 -0.827570833333 1.10307083333 0.0273408927495 0.429295095792 29752 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 0.2755 0.0218 -0.827570833333 1.10307083333 -0.0266069941274 0.461382798759 54010 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 9405 485008 chr11:65500659-65500691+ NoOverlap chr11 65500659 65500691 + 10.5749729438 11 0.612775962879 -0.673417936672 11.2483908805 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;65500658;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A65500659-65500691%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A65500659-65500691&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.265381011439 0.293894067525 1.02672531854 65268130 65268162 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;65268129;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A65500659-65500691%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A65268130-65268162&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RLGLATTRRRR Same 486962 chr11:65500659-65500691+ 10475 10475 -1070 0 1911 65487766 65500691 2793 2793;4431;9405 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:65487766-65500691&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.846153846154 6.95918181818 0.8265 -8.7838 15.7429818182 0.288099040787 1.03003457795 5912 5229 5229;5912;13904 2.23702727273 0.3394 -11.7914454545 14.0284727273 0.104581808242 0.876100845748 11089 4000 4000;11089;13439 0.0 0.0 ENST00000534336.1,ENST00000544868.2 NC,NCintron not annotated putative regulatory region 9418 518064 chr17:48595772-48595801+ NoOverlap chr17 48595772 48595801 + 6.62323005199 10 0.628601510643 -14.0271201372 20.6503501892 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48595771;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48595772-48595801%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48595772-48595801&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000774229377606 0.293665902475 1.0044935596 46673134 46673163 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46673133;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48595772-48595801%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46673134-46673163&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASSFHIFIIVVVVVIIIIIIIIIIIIIIEVFHVQS Same 519465 chr17:48595772-48595801+ 4627 4627 4791 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.166666666667 0.0 5.11484 0.8565 -19.42363 24.53847 0.270515865889 0.944195752273 6333 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 4.25608 0.3429 -21.002 25.25808 0.221124906008 1.07018132644 5724 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000225648.3,ENST00000552000.2 NCintron,AntiUTR3,AntiNCintron not annotated putative regulatory region 9432 547967 chr22:18991818-18991982+ NoOverlap chr22 18991818 18991982 + 5.10555455089 55 0.278365620036 1.76591816815 3.33963638273 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;18991817;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A18991818-18991982%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A18991818-18991982&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.199131920839 0.293400231953 0.868680286168 18979331 18979495 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;18979330;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A18991818-18991982%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A18979331-18979495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPHWPIINTSMVSALVYSEGAPLPRPLERPVLVEFTLLEMEKRTKPVCVFWNHSLA Same 549387 chr22:18991818-18991982+ 10213 10213 -781 0 6645 18985824 18997940 Best 9432 9432;26026;32176;36938;37917 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:18985824-18997940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.593939393939 0.48125 1.20743454545 0.0188 0.0501345454545 1.1573 0.0342672350177 0.556084029678 27214 Best 27214 27214;29320;33193;33239;34296 24.0979218182 0.6367 1.91542909091 22.1824927273 1.03072177578 1.04178149317 616 175 175;616;1654;2214;58981 0.0 0.750879002509 chr22:46380788-46380955- ENST00000438934.5 NC pseudogene DiGeorge syndrome critical region gene 5 (non-protein coding) unprocessed pseudogene (ENSG00000237517) 9452 518086 chr17:48610745-48610780+ NoOverlap chr17 48610745 48610780 + 9.62404164672 12 0.697398336767 3.18469969059 6.43934195613 ENST00000239165.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48610744;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48610745-48610780%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48610745-48610780&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.321735546048 0.29302173591 0.85278866399 46688107 46688142 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46688106;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48610745-48610780%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46688107-46688142&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HAPPAGVQALHRGGEGSAR Same 519487 chr17:48610745-48610780+ 9915 9915 -463 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.694444444444 1.15384615385 5.69999166667 0.9679 -4.210075 9.91006666667 0.301781792352 0.975659645114 5572 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 2.45526666667 0.947 -25.1080333333 27.5633 0.370095341599 1.07538528481 4119 Best 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000239165.8,ENST00000567101.2 AntiCDS,AntiNCintron not annotated putative regulatory region 9463 537029 chr2:227614734-227614832+ NoOverlap chr2 227614734 227614832 + 5.63040608484 33 0.712127916843 4.67153634266 0.958869742173 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227614733;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227614734-227614832%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227614734-227614832&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.617672545549 0.292864823885 0.456744354663 228479450 228479548 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228479449;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227614734-227614832%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228479450-228479548&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLQVVQLPQTPPQPPPQPPPQPPPQPPQPPPQPPQLPQPQQPMVSVER Same 538399 chr2:227614734-227614832+ 9765 9765 -302 0 561 227598893 227617809 853 853;1652;2344;9463;10241;31196;35213 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227598893-227617809&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.656565656566 0.5 14.3568787879 0.8112 16.1487030303 -1.79182424242 0.468401014034 0.243144120704 3360 692 692;818;1157;2569;3216;3360;61544 13.7865333333 0.4824 17.8918939394 -4.10536060606 0.233468858374 0.295006279948 5489 2617 2617;3136;3286;3380;3692;5489;30629 0.0 0.126031544245 chr7:6621122-6622971+ ENST00000264387.8 AntiCDSintron protein-coding gene (shared cluster) protein-coding genes ENSG00000284643, ENSG00000284622, ENSG00000284704, ENSG00000284631 9480 530992 chr19:35897702-35897791- NoOverlap chr19 35897702 35897791 - 2.39187326506 30 0.823490246942 -3.59228326877 5.98415653383 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35897701;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35897702-35897791-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35897702-35897791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00498018261201 0.292548916756 1.00473808058 36388604 36388693 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36388603;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35897702-35897791-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36388604-36388693&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PDLPLPLLLHAGHPPFPAHSETVGSGPSSLGFPDWDPNTHAAYTDSPYSCPASAAENFLPPDFYPPSDPGQPCPFPQGMEVR Same 532459 chr19:35897702-35897791- 9513 9513 -33 0 275 35897702 35900539 360 360;1428;9480;10866 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35897702-35900539&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.577777777778 0.3125 7.45372333333 0.9908 -5.02589666667 12.47962 0.913514238719 1.06486905833 1255 295 295;1255;2053;19414 8.08192 0.3909 -6.36021666667 14.4421366667 0.637465252454 0.985682593725 3028 65 65;3028;5032;47030 0.0 0.0 ENST00000396901.5,ENST00000586361.5,ENST00000591730.5 UTR5,NC,NCintron coding exon(s) NFKBID 5' extension 9481 505959 chr15:21614124-21614327+ NoOverlap chr15 21614124 21614327 + 3.51732646893 68 0.368674125636 0.280414900451 3.23691156848 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;21614123;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21614124-21614327%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A21614124-21614327&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.177280074161 0.292535220909 0.865273834223 22344666 22344869 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;22344665;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21614124-21614327%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A22344666-22344869&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VANNVTEFIFLGLSQDSGMQLMFFVLFLLFYVVIMVGNLLILLMVFSDSRLHTPMYFFLSNLSFVDIACSSATAPK Different 507671 chr15:21614124-21614888+ 1027 1027 8454 0 509 21609137 21614980 756 756;2089;3812;4681;5034;9481;63060 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:21609137-21614980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.421568627451 0.337562051848 8.33135588235 0.8002 -0.505804411765 8.83716029412 0.944080297081 1.06240141533 1118 347 347;392;1003;1013;1063;1118;2359 29.1418411765 0.8503 -14.0508132353 43.1926544118 1.00946405355 0.948750838096 949 Best 949 949;977;1339;1358;1773;2103;2551 0.0 0.275786272116 chr11:55993681-55994625- ENST00000625989.2 NCintron pseudogene (shared cluster) two olfactory receptor pseudogenes in close proximity (ENSG00000285491 & ENSG00000285116) 9523 577687 chr7:27152580-27152663+ NoOverlap chr7 27152580 27152663 + 3.94243575473 28 0.70539406424 -0.578721370016 4.52115712474 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27152579;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27152580-27152663%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27152580-27152663&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.241553485696 0.291756089526 0.872807774348 27192199 27192282 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27192198;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27152580-27152663%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27192199-27192282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MRLYSRKGNYKKVHVHGSHPHDRQRPMEGPNNS Same 578726 chr7:27152580-27152663+ 9983 9983 -460 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.452380952381 1.16666666667 -0.0324107142857 0.9804 -5.14659285714 5.11418214286 0.171301139024 0.806601430727 10221 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -7.61125 0.928 -16.1105714286 8.49932142857 0.0660683724723 0.767264053534 15783 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518947.6,ENST00000498652.1 NC,AntiNC not annotated putative regulatory region 9542 579475 chr7:134208937-134208969+ NoOverlap chr7 134208937 134208969 + 4.7349092852 11 0.780909576423 -6.36078182134 11.0956911065 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;134208936;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134208937-134208969%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A134208937-134208969&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.108459303205 0.291351813514 1.03815770383 133893689 133893721 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;133893688;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A134208937-134208969%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A133893689-133893721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELSPDSHLNPELPQHLSSSALGLPQQAQDLSLNPTEEDVQQSDLPLK Same 580518 chr7:134208937-134208969+ 9090 9090 452 0 334 134208697 134210967 457 457;654;903;1140;1971;3155;4173;9542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:134208697-134210967&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.545454545455 0.0 3.52026363636 0.91 -8.06762727273 11.5878909091 0.16535514385 1.02283270593 10575 146 146;1038;1039;1252;1266;1962;1997;10575 3.23020909091 0.3526 -11.3399818182 14.5701909091 0.129852387534 0.891974041371 9142 15 15;2334;2668;2929;2944;3198;3972;9142 0.0 0.0 ENST00000285928.2 CDSintron coding exon(s) LRGUK alternative large final exon 9563 587649 chr8:105143574-105143726- NoOverlap chr8 105143574 105143726 - 3.16002551247 51 0.927690786393 0.978923524127 2.18110198834 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;105143573;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A105143574-105143726-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A105143574-105143726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.416117305276 0.290937345989 0.709891622448 106155802 106155954 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;106155801;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A105143574-105143726-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A106155802-106155954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FQLKSGFFCNSGMCRR*RASWHEERQRWINYAENMEILLIIG*QRSPAHIISKR Same 588593 chr8:105143574-105143726- 9283 9283 280 25 5467 105139340 105143726 7615 7615;9563;30535 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:105139340-105143726&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.477124183007 0.959247648903 -1.13622352941 1.0 -1.71335490196 0.577131372549 0.0408888999959 0.45819180115 25321 Best 25321 25321;26372;64761 -3.76310980392 0.9363 -3.24413921569 -0.518970588235 0.0553193206122 0.470091272978 17672 11489 11489;17672;52092 0.0 0.0 ENST00000518927.1,ENST00000518180.1 NC,AntiNCintron not annotated potentially spurious 9587 520819 chr17:29131386-29131442- NoOverlap chr17 29131386 29131442 - 4.89136845815 19 0.887655049732 -0.806836808983 5.69820526713 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;29131385;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29131386-29131442-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A29131386-29131442&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.271074867661 0.29056705742 0.913980516618 27458404 27458460 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;27458403;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A29131386-29131442-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A27458404-27458460&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLHLLPQVKEEDKTLPKPGSPGKEEGAVSASLSSPR Same 522237 chr17:29131386-29131442- 9553 9553 34 0 147 29124548 29133836 176 176;1108;2567;6559;7208;9587 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:29124548-29133836&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.543859649123 0.0 6.19865263158 1.0 -1.38819473684 7.58684736842 0.504447236041 0.918742115751 3115 498 498;1507;2077;2179;3115;4205 11.9892526316 0.5287 -0.0786421052632 12.0678947368 0.559585625652 0.848298946276 3310 450 450;1147;2200;2400;2550;3310 0.0 0.0991729643505 chr11:66336317-66336402- ENST00000527372.5,ENST00000528322.6 CDSintron,NCintron coding exon(s) MYO18A alternative first exon plus four cassette exons 9619 569290 chr5:141417586-141417615- NoOverlap chr5 141417586 141417615 - 11.3496799707 10 0.835448233768 4.78078997731 6.56888999343 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;141417585;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A141417586-141417615-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A141417586-141417615&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.33188888337 0.289945190451 0.785909671985 140797153 140797182 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;140797152;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A141417586-141417615-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A140797153-140797182&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLCTGRRRRPEALCGTAT Same 570306 chr5:141417586-141417615- 9133 9133 486 0 434 141413416 141417615 620 620;9619 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:141413416-141417615&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 0.909090909091 6.03766 1.0 1.68219 4.35547 0.166813515007 0.580558099356 10477 8893 8893;10477 -7.98738 0.8317 -19.1001 11.11272 -0.0253411300443 0.737522699072 52812 19991 19991;52812 0.0 0.0 ENST00000253812.7,ENST00000612467.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 9650 508439 chr15:38073018-38073050- NoOverlap chr15 38073018 38073050 - 8.73073621772 11 0.775972589248 -0.174727445299 8.90546366301 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;38073017;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A38073018-38073050-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A38073018-38073050&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.257155670331 0.289272758401 1.0102899763 38365219 38365251 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;38365218;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A38073018-38073050-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A38365219-38365251&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAGWRAQASPSAAAGR Same 510159 chr15:38073018-38073050- 9913 9913 -263 0 6797 38072940 38073050 Best 9650 9650;39106 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:38072940-38073050&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.757575757576 0.423076923077 1.24857272727 0.9154 -2.32058181818 3.56915454545 -0.0165057855636 0.539318561939 51687 Best 51687 51687;69033 -3.54854545455 0.5611 -9.10951818182 5.56097272727 -0.0119808308939 0.549891000063 42150 Best 42150 42150;49877 0.0 0.0 not annotated potentially spurious 9679 492601 chr12:89352548-89352610+ NoOverlap chr12 89352548 89352610 + 5.9297569309 21 1.0 3.40405224051 2.52570469039 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;89352547;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89352548-89352610%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A89352548-89352610&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.459980476923 0.288604680908 0.562277760206 89746325 89746387 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;89746324;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89352548-89352610%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A89746325-89746387&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAAPQWIQTASVSMDTFSGPANERAAEGAVAVGTGRLEQVVLMNC Same 494583 chr12:89352548-89352610+ 11011 11011 -1332 0 1997 89351989 89353104 2898 2898;3067;8028;9679;12637;22392;31672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:89351989-89353104&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.923753665689 0.765733333333 0.9931 -0.656976190476 1.42270952381 0.0487782366997 0.438556516205 23441 3934 3934;7220;23441;23638;59195;70262;73002 -1.68649047619 0.8208 -1.13132380952 -0.555166666667 0.00137480203415 0.373553729265 34681 3920 3920;22214;30464;33580;34681;56829;66039 0.0 0.0 ENST00000611513.1,ENST00000279488.7 NC,AntiUTR5 not annotated putative regulatory region 9713 526660 chr19:1531846-1531878+ NoOverlap chr19 1531846 1531878 + 9.72577273846 11 0.684992751965 0.331018176946 9.39475456151 ENST00000334770.8,ENST00000454744.6,ENST00000588430.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;1531845;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1531846-1531878%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A1531846-1531878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.266574083694 0.287620321221 1.01158777022 1531845 1531877 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;1531844;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A1531846-1531878%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A1531845-1531877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPWESSSPSSGPPNGWIIPANTALATSSWTGGARDGTHMALRPPGG Same 528105 chr19:1531846-1531878+ 10826 10826 -1113 0 61 1524154 1533821 68 68;129;412;744;947;2039;3059;9713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:1524154-1533821&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.787878787879 0.647058823529 19.1851545455 0.8801 3.44479090909 15.7403636364 0.578236667665 0.995616933642 2663 205 205;265;523;631;1057;1237;1482;2663 36.4106363636 0.8465 1.96202727273 34.4486090909 1.02776690769 1.02988819612 648 449 449;648;739;1129;1230;1261;1334;1921 0.0 0.383028145284 chr5:58455539-58455779- ENST00000334770.8 CDS pseudo-exon PLK5 pseudo exons 9720 515935 chr17:2392688-2392759+ NoOverlap chr17 2392688 2392759 + 5.38480425378 24 0.601944253707 0.949754138788 4.43505011499 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2392687;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2392688-2392759%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2392688-2392759&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.2648815523 0.287474482955 0.829053440632 2295982 2296053 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2295981;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2392688-2392759%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2295982-2296053&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPLPLGAPRPHPEARAHPRGRGFPASPSPAAPPSATR Same 517311 chr17:2392688-2392759+ 10259 10259 -539 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.791666666667 1.36216216216 0.716858333333 0.8478 -9.71607083333 10.4329291667 0.316561441282 1.06777450509 5263 Best 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -4.52515 0.3839 -15.8242708333 11.2991208333 0.151320767155 0.867554771889 7960 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0526463511051 chr11:1443106-1443139+ ENST00000572892.5,ENST00000174618.4,ENST00000571232.1 AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 9721 473171 chr1:90834003-90834056- NoOverlap chr1 90834003 90834056 - 5.60315001011 18 0.948393987945 0.477483293249 5.12566671686 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90834002;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90834003-90834056-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90834003-90834056&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.329385207616 0.287447952015 0.847668859901 91299560 91299613 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91299559;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90834003-90834056-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91299560-91299613&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AASIPTNVACHSPQMAQGKKRDDSPEPLDPQR Same 475050 chr1:90834003-90834056- 10396 10396 -675 0 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.592592592593 0.211764705882 -1.6596 1.0 -4.65715555556 2.99755555556 -0.00907823779774 0.548622280738 46543 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -8.49412777778 0.9033 -14.26775 5.77362222222 -0.019618838214 0.591103088912 47792 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 9723 489041 chr11:76714935-76714961- NoOverlap chr11 76714935 76714961 - 14.5354114109 9 0.75293609013 8.3978890313 6.13752237956 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;76714934;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76714935-76714961-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A76714935-76714961&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.316786142761 0.287412176112 0.595844365104 76425979 76426005 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;76425978;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76714935-76714961-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A76425979-76426005&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CEVGSDPELRPSCLSLPR Same 491030 chr11:76714935-76714961- 9904 9904 -181 0 85 76712306 76719866 98 98;1554;2355;2775;9069;9723;10637;30796 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:76712306-76719866&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.703703703704 0.321428571429 16.4776 0.9529 1.99667777778 14.4809222222 0.621469544556 0.994679769668 2434 88 88;186;1371;1479;2258;2338;2434;2689 28.3347666667 0.7364 -2.48596666667 30.8207333333 0.984923182721 1.04145416484 1347 838 838;995;1128;1187;1347;1571;1780;2549 0.0 0.319295483692 chr17:8009506-8009586+ ENST00000525328.1 NCintron pseudogene extension GUCY2EP extended [ENSG00000204529] 9737 563911 chr5:37839692-37839736+ NoOverlap chr5 37839692 37839736 + 6.90436006784 15 0.686670227105 0.149113289515 6.75524677833 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;37839691;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37839692-37839736%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A37839692-37839736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.25684997078 0.287230625082 0.94995087562 37839794 37839838 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;37839793;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37839692-37839736%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A37839794-37839838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPAAAAANRARAAGNSPAGPPHPQKPR Same 564899 chr5:37839692-37839736+ 10273 10273 -536 0 1098 37834655 37842122 1665 1665;3432;9737;17708;23431;43248;66339;67574 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:37834655-37842122&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 1.0 11.16398 0.7556 3.28854 7.87544 0.360738448786 0.877026996571 4518 Best 4518 4518;14736;23580;58453;64403;65427;67583;67906 8.52418666667 0.3444 -1.72724666667 10.2514333333 0.228170841083 0.76422070184 5584 Best 5584 5584;29735;41849;43350;44494;45609;51811;60370 0.0 0.122213294473 chr16:69329997-69330570- not annotated putative regulatory region 9738 566843 chr5:473333-473380- NoOverlap chr5 473333 473380 - 7.61090638116 16 0.533731021592 0.935237487778 6.67566889338 ENST00000264938.7,ENST00000514375.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;473332;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A473333-473380-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A473333-473380&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.208476144415 0.287200893518 0.945989490631 473448 473495 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;473447;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A473333-473380-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A473448-473495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APLTPSSPAGDTGSDTPLTGRSSPRHGPPTAAAAVPEKPQIPAR Same 567847 chr5:473333-473380- 10399 10399 -661 0 575 472967 473380 874 874;9738 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:472967-473380&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.770833333333 1.44 3.3593125 0.7544 -5.3097 8.6690125 0.176886595567 0.957433497122 9863 4 4;9863 -4.4589875 0.5802 -11.44121875 6.98223125 0.034102118085 0.646261537915 22552 2314 2314;22552 0.0 0.151150419522 chr3:12815141-12815433+ ENST00000264938.7,ENST00000607286.5 CDS,AntiNC coding exon(s) SLC9A3 alternative final exon 9776 531214 chr19:40458139-40458171- NoOverlap chr19 40458139 40458171 - 6.74229097637 11 0.842431178343 -2.83760916103 9.5799001374 ENST00000263368.8,ENST00000595483.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;40458138;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40458139-40458171-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A40458139-40458171&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.123854809741 0.286454472529 1.04237874241 40964046 40964078 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;40964045;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40458139-40458171-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A40964046-40964078&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRPEHCGSHEGSWCGQGRGLHLGWVVGSWR Same 532685 chr19:40458139-40458171- 9408 9408 368 0 555 40458139 40467303 841 841;9776;45931;47832;50410;51155;58712 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:40458139-40467303&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.69696969697 0.55 2.44429090909 0.9682 -13.1410454545 15.5853363636 0.251463434378 1.03981019793 6935 868 868;6935;16896;20165;31195;46951;56302 -13.6023818182 0.6727 -26.5553727273 12.9529909091 -0.0251519093144 0.748522823191 52654 3101 3101;8091;23506;32765;33228;42442;52654 0.0 0.0453818999406 chr14:104938063-104954799- ENST00000263368.8,ENST00000597870.1 CDS,NC coding exon(s) BLVRB retained intron CDS 9851 562942 chr4:151187418-151187459- NoOverlap chr4 151187418 151187459 - 7.03378571064 14 0.917902102475 1.16012862325 5.8736570874 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;151187417;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151187418-151187459-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A151187418-151187459&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.326357352789 0.2850863805 0.86746722012 152108570 152108611 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;152108569;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A151187418-151187459-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A152108570-152108611&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INECIISFLSFSSQGPLSSIRAVIKRCK None NA NA 0 161 151175562 151187459 192 192;396;2038;2250;4391;9851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:151175562-151187459&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.452380952381 0.477272727273 13.1367285714 1.0 1.03732857143 12.0994 0.776779426977 1.01940533779 1769 84 84;931;1769;1951;1972;2039 12.0258428571 0.5957 -2.09003571429 14.1158785714 0.528732851409 0.87615320579 3428 878 878;883;2268;2607;3428;4439 0.0 0.0 ENST00000304527.8,ENST00000474743.5 UTR5,NC coding exon(s) SH3D19 5' coding exons 9874 482354 chr10:117542538-117542606- NoOverlap chr10 117542538 117542606 - 5.49150882597 23 0.762321494323 2.59947837177 2.8920304542 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117542537;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542538-117542606-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117542538-117542606&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.442659946221 0.284650491957 0.63330761831 119302049 119302117 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119302048;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542538-117542606-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119302049-119302117&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SASEGGERLGTRRPGSGPRVERSRRR Same 484281 chr10:117542538-117542606- 9867 9867 7 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.739130434783 0.929292929293 1.23894782609 0.9314 -1.69275217391 2.9317 0.089347947395 0.591258126021 17110 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -10.1188869565 0.769 -9.57327826087 -0.545608695652 -0.0501900551801 0.35928493912 71420 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000551288.5,ENST00000442245.5 NCintron,AntiUTR5 not annotated putative regulatory region 9883 505841 chr14:105855532-105855585- NoOverlap chr14 105855532 105855585 - 5.45260567301 18 0.666407263294 -1.16980579495 6.62241146796 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105855531;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105855532-105855585-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105855532-105855585&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.194478805513 0.284531344158 0.972898987942 106321637 106321690 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106321636;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105855532-105855585-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106321637-106321690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTSTLTIKESDWLGQSMFTCRVDHR None NA NA 0 63 105837465 105856215 70 70;297;303;618;1534;1768;2725;3071;4703;4966;9883;19584;21248 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105837465-105856215&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 0.794117647059 9.74646666667 0.7973 -4.23542777778 13.9818944444 0.585719083761 1.04836965253 2623 171 171;488;606;760;1848;2075;2155;2623;3063;3220;4742;9758;24097 17.7467833333 0.4351 -2.56549444444 20.3122777778 0.741769419258 1.01953903656 2659 30 30;154;1395;1760;1980;1989;2291;2612;2659;3437;3454;6249;20954 0.0 0.0 ENST00000390559.6,ENST00000612473.1 NC,NCintron coding exon(s) IGHM alternative final coding exons 9913 529824 chr19:7019464-7019529- NoOverlap chr19 7019464 7019529 - 3.3745090528 22 0.502493462896 -5.376300043 8.7508090958 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;7019463;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A7019464-7019529-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A7019464-7019529&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00996314981833 0.283989266389 1.05991873566 7019475 7019540 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;7019474;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A7019464-7019529-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A7019475-7019540&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDR Same 531288 chr19:7019464-7019529- 9586 9586 327 0 5147 7019464 7019637 7145 7145;9913 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:7019464-7019637&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.651515151515 0.434210526316 6.08278636364 0.2173 -2.49725909091 8.58004545455 0.109479746279 0.991005789071 14920 Best 14920 14920;24731 6.08278636364 0.0679 -2.49725909091 8.58004545455 0.0888367533211 0.759427824816 12688 Best 12688 12688;29106 0.650445571509 chr19:7032313-7032879+ 0.6506547956 chr19:7032313-7032879+ ENST00000358469.4 NC protein-coding gene protein coding gene ENSG00000196589 9916 473180 chr1:90835001-90835108- NoOverlap chr1 90835001 90835108 - 4.11276948069 36 0.897008383985 2.59428330842 1.51848617227 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90835000;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835001-90835108-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90835001-90835108&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.530261259535 0.283963010292 0.553889195576 91300558 91300665 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91300557;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835001-90835108-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91300558-91300665&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLDNDQFAVSSRLNDNKLRVSHQLFI*HLIMERAAR Same 475059 chr1:90835001-90835108- 9957 9957 -41 9 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.8 0.211527777778 1.0 -0.999419444444 1.21094722222 0.0932825388109 0.502351557494 16613 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -7.86446388889 0.9112 -9.08605555556 1.22159166667 -0.0108425065962 0.496518977318 41455 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 9953 514852 chr16:72284703-72284771- NoOverlap chr16 72284703 72284771 - 3.55227387211 23 0.935736297564 -2.58701315652 6.13928702862 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72284702;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72284703-72284771-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72284703-72284771&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.126226344411 0.283136082117 0.978890668781 72318602 72318670 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72318601;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72284703-72284771-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72318602-72318670&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVLIDFFFHFFLSFPGRVNSWMLQEQRIYQLQTKHRETQANLEQ Same 516502 chr16:72284703-72284771- 11057 11057 -1104 0 6996 72284703 72284771 Best 9953 9953 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72284703-72284771&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.550724637681 0.392045454545 -3.55238695652 0.9981 -4.20184347826 0.649456521739 -0.0668360041104 0.368967263752 72939 Best 72939 72939 -5.96533478261 0.5703 -6.98277826087 1.01744347826 -0.0229857639099 0.439251846112 50685 Best 50685 50685 0.0 0.0 ENST00000624829.3 NC not annotated potentially spurious 9975 519572 chr17:81181991-81182071+ NoOverlap chr17 81181991 81182071 + 6.67619995718 27 0.477782016395 3.60480002121 3.07139993597 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;81181990;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A81181991-81182071%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A81181991-81182071&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.286929674852 0.282641879891 0.689033527017 79155791 79155871 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;79155790;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A81181991-81182071%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A79155791-79155871&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YILSIIPSSGPTTPLTDEEAEAMIQAADTHGDGRINYEGGGSTAGAPSGPSFPC Same 520976 chr17:81181991-81182071+ 10617 10617 -642 0 5269 81181263 81182071 7315 7315;9975;18349 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:81181263-81182071&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 0.7 12.4034518519 0.7274 5.30373333333 7.09971851852 0.675789702752 0.924943027623 2180 Best 2180 2180;2603;3712 16.4464111111 0.5114 2.47281481481 13.9735962963 0.857461227055 0.934416555594 2288 Best 2288 2288;3208;3277 0.0 0.113143115315 chr10:5498998-5499438- ENST00000414089.5 NC protein-coding gene protein coding gene ENSG00000225180 9994 473877 chr1:121037563-121037796- NoOverlap chr1 121037563 121037796 - 2.95042436379 78 0.332637482809 -0.915175629565 3.86559999335 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;121037562;234;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A121037563-121037796-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A121037563-121037796&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.120772008249 0.282207183557 0.919697558362 149700917 149701150 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;149700916;234;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A121037563-121037796-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A149700917-149701150&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KYHSLIQDQAQELTHLRQKMKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFSTGK Same 475757 chr1:121037563-121037796- 8034 8034 1960 0 5560 121029605 121037796 7747 7747;9994;42358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:121029605-121037796&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.491452991453 0.141818181818 1.53322435897 0.5663 -5.72191923077 7.25514358974 0.448111543839 1.01232696366 3528 Best 3528 3528;4495;18701 22.8646846154 0.6982 -7.27548589744 30.1401705128 0.926753538898 1.01690023997 1964 89 89;1964;15691 0.0977834372121 chr1:149007201-149007436+ 0.693166626316 chr1:149007201-149007436+ ENST00000612313.1 NC pseudogene phosphodiesterase 4D interacting protein (PDE4DIP) unprocessed pseudogene (ENSG00000275585) 9995 474044 chr1:149729379-149729612- NoOverlap chr1 149729379 149729612 - 2.95042436379 78 0.332637482809 -0.915175629565 3.86559999335 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;149729378;234;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A149729379-149729612-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A149729379-149729612&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.120772008249 0.282207183557 0.919697558362 149700917 149701150 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;149700916;234;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A149729379-149729612-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A149700917-149701150&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KYHSLIQDQAQELTHLRQKMKLGRVASALLIQHVKNTLKTFEELLQSNNIDHYMEQHYCEQLAKGSQLAESLARKFSTGK Same 475925 chr1:149729379-149729612- 8035 8035 1960 0 7026 149721425 149729612 Best 9995 9995;14000;42359 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:149721425-149729612&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.491452991453 0.141818181818 1.88023589744 0.5598 -4.60001538462 6.48025128205 0.426888750985 0.979802323813 3737 Best 3737 3737;4607;21298 28.1313769231 0.7528 -6.09917692308 34.2305538462 0.938292674916 1.00552687118 1895 919 919;1895;17008 0.098918829034 chr1:149007201-149007436+ 0.730342259222 chr1:149007201-149007436+ ENST00000617878.1 NC pseudogene extension pseudogene of PDE4DIP extended (ENSG00000234232) 10011 588344 chr9:8438688-8438780+ NoOverlap chr9 8438688 8438780 + 4.20277099456 31 0.957546939951 1.93514847371 2.26762252085 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;8438687;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A8438688-8438780%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A8438688-8438780&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.454444402868 0.281852172031 0.622356168726 8438688 8438780 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;8438687;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A8438688-8438780%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A8438688-8438780&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IIETKMFRPFRADRGRELLSYMD*VVVWLEREDTEPIR Same 589290 chr9:8438688-8438780+ 10464 10464 -453 11 934 8437052 8438823 1439 1439;10011;23498;48565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:8437052-8438823&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.462365591398 0.845454545455 1.10496129032 1.0 1.25354516129 -0.148583870968 0.0752015024497 0.360669591235 18912 Best 18912 18912;32674;56844;67818 0.0859387096774 0.7109 0.782029032258 -0.696090322581 0.0546985514626 0.419868493719 17802 Best 17802 17802;21160;38054;45986 0.0 0.0 ENST00000355233.9 AntiCDSintron coding exon(s) PTPRD cassette exon 10019 552902 chr3:88135077-88135202+ NoOverlap chr3 88135077 88135202 + 3.05172144728 42 0.984965503711 -0.0904928261325 3.14221427341 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88135076;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88135077-88135202%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88135077-88135202&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.311482766343 0.281660480836 0.798047826574 88184227 88184352 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88184226;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88135077-88135202%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88184227-88184352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELIFIWSKLQLKSNPSKQVFVDQCYQLLRTATNVRVIFPFMKIIKDEVNR Same 553844 chr3:88135077-88135202+ 10774 10774 -755 0 293 88126134 88139310 388 388;882;969;1723;6190;10019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88126134-88139310&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.325396825397 0.0 4.82232857143 0.9792 0.53925952381 4.28306904762 0.571670430098 0.832726227757 2709 384 384;810;1269;2625;2709;3294 20.6732857143 0.9164 2.39505714286 18.2782285714 1.00201199507 1.03054956875 1080 476 476;635;1080;1140;2139;2319 0.0 0.196460591264 chr6:87245503-87245644+ ENST00000473136.4,ENST00000462901.5 NC,AntiUTR5intron redundant PhyloCSF signals are accounted for elsewhere on the list 10066 483253 chr11:1101753-1101788+ NoOverlap chr11 1101753 1101788 + 7.97609170278 12 0.583853411663 -4.2674083064 12.2435000092 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1101752;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1101753-1101788%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1101753-1101788&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.146215531882 0.280751693669 1.02447353241 1095661 1095696 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1095660;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1101753-1101788%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1095661-1095696&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPPHPVPVPLTSLASRPQENETWWLCDCFMATCK Same 485183 chr11:1101753-1101788+ 10279 10279 -213 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.692307692308 12.7516916667 0.8642 -3.54029166667 16.2919833333 0.496007226176 1.02281014258 3168 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 20.3317583333 0.8467 -11.0692166667 31.400975 0.902973727891 1.04435517149 2088 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0587366317042 chr11:1252809-1252980+ 0.28736147238 chr11:1193485-1193659+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 10070 481972 chr10:102450527-102450556- NoOverlap chr10 102450527 102450556 - 10.5752199173 10 0.829164568551 2.91814005375 7.65707986355 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102450526;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102450527-102450556-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102450527-102450556&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.304073338714 0.28070838653 0.898050251907 104210284 104210313 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104210283;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102450527-102450556-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104210284-104210313&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLEPDHRVEWRVRRRPDSGDSSPAR Same 483889 chr10:102450527-102450556- 9690 9690 380 0 356 102450527 102451009 493 493;556;10070 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102450527-102451009&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.866666666667 1.27272727273 16.4276 0.7084 0.22362 16.20398 0.30797701716 1.00801189398 5436 272 272;1756;5436 19.53985 0.3893 -4.16871 23.70856 0.444467121939 1.02250907916 3758 566 566;3183;3758 0.0 0.227385387212 chr17:42543028-42544238+ ENST00000625129.1,ENST00000596366.1,ENST00000473970.2 NC,AntiNC,AntiNCintron protein-coding gene protein-coding gene ENSG00000120055 10074 551734 chr3:28576068-28576235+ NoOverlap chr3 28576068 28576235 + 3.55804457196 56 0.728430827584 1.57438932931 1.98365524265 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;28576067;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576068-28576235%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A28576068-28576235&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.431029139834 0.280618263625 0.699390838979 28617559 28617726 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;28617558;168;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576068-28576235%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A28617559-28617726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPALQGHAATRSSRTPAQTPPGPEPSRRAELRGAGAKGGRREGAREAAPPRRAMRATGS*VAAGRR Same 552671 chr3:28576068-28576235+ 10437 10437 -363 6 983 28576036 28576517 1505 1505;5038;5448;7957;10074;23556 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:28576036-28576517&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.791666666667 0.888275862069 -0.870591071429 0.7319 -2.09122857143 1.2206375 0.0165863680257 0.526679851368 33970 2378 2378;7891;9594;33970;37362;68747 -4.7791625 0.3738 -4.89352142857 0.114358928571 -0.00577733551438 0.49910970996 38452 2933 2933;5925;8065;10942;38452;44104 0.0 0.0 ENST00000432518.6 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 10091 588643 chr9:23822797-23822895+ NoOverlap chr9 23822797 23822895 + 3.3051241564 33 0.967750288419 -0.625572676008 3.93069683241 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23822796;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23822797-23822895%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23822797-23822895&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.274117207905 0.280278396948 0.843066044319 23822795 23822893 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23822794;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23822797-23822895%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23822795-23822893&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTEQWATQSPQERDRGYSFKGMMQV*CSKVR*GRPALPAPMR Same 589589 chr9:23822797-23822895+ 11218 11218 -1127 9 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.59595959596 0.815294117647 -2.20546666667 0.9994 -4.30953030303 2.10406363636 -0.00426869862872 0.546691373697 43734 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -5.4837030303 0.3799 -6.76112727273 1.27742424242 -0.0227527661335 0.49844076693 50472 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000380117.5,ENST00000462649.1 AntiUTR5intron,AntiNCintron not annotated putative regulatory region 10098 511014 chr16:27067257-27067283+ NoOverlap chr16 27067257 27067283 + 16.287844287 9 0.793855700516 -2.88189999262 19.1697442796 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;27067256;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A27067257-27067283%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A27067257-27067283&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.347201977545 0.280115428648 1.01656127476 27078578 27078604 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;27078577;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A27067257-27067283%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A27078578-27078604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSSSYLSDTQSSESHVSSVQHPRPEEGSHASLSSGYAGDKEGSDISLVGSHR Same 512654 chr16:27067257-27067283+ 10015 10015 83 0 1164 27067257 27067584 1766 1766;3449;10098 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:27067257-27067584&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.830769230769 31.0579666667 0.9348 4.22818888889 26.8297777778 0.538441184572 1.03188694796 2882 2003 2003;2882;23697 30.0523777778 0.328 0.8724 29.1799777778 0.330750075365 1.03040609727 4350 3724 3724;4350;20210 0.0 0.0 ENST00000418886.1,ENST00000565783.1 NC,AntiNCintron under investigation ENSG00000234186 has long been considered as an ambiguous gene. RefSeq recognise human C16orf82 and its mouse ortholog 4930571K23Rik as single exon protein-coding genes, although both are lncRNAs in GENCODE (where the transcript structure is certainly well supported). The human CDS is poorly conserved over its first half, although the putative STOP codon and sequence upstream produce a PhyloCSF signal that looks genuine, suggesting the potential for partial translation in mammalian genomes. However, there is no obvious ATG initiation codon to use. A [CTG] codon conserved in mammals seems to demarcate the conserved sequence, which would give a 154aa CDS in human [chr16:27066996-27067460]. 10102 569171 chr5:140575498-140575524- NoOverlap chr5 140575498 140575524 - 9.43942218357 9 0.867399099718 -1.08800004588 10.5274222294 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140575497;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140575498-140575524-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140575498-140575524&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.19602344555 0.280084060147 1.02625668959 139955083 139955109 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139955082;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140575498-140575524-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139955083-139955109&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLAGEVVGEEAEGSLPWIVSWLLEGNNYSGLLLR Same 570184 chr5:140575498-140575524- 9491 9491 611 0 157 140570090 140575575 188 188;325;1178;1912;10102;11098 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140570090-140575575&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.0 18.1080555556 0.9965 -6.42767777778 24.5357333333 0.71943280005 0.954981772997 2012 143 143;737;966;1745;2012;3638 25.1677777778 0.4502 -6.74014444444 31.9079222222 0.559025858911 1.04640212357 3312 94 94;445;458;3312;3430;3706 0.0 0.0 ENST00000507279.5 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 10112 499102 chr13:114196396-114196425+ NoOverlap chr13 114196396 114196425 + 12.1575898945 10 0.647104600595 -2.76631002426 14.9238999188 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;114196395;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A114196396-114196425%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A114196396-114196425&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.289301961522 0.2799128183 0.994574035442 114961871 114961900 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;114961870;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A114196396-114196425%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A114961871-114961900&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLLMPQVQSAQPLVDTR Same 501108 chr13:114196396-114196425+ 11237 11237 -1125 0 467 114196396 114200402 673 673;10112 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:114196396-114200402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.7 0.555555555556 16.45297 0.7534 -7.05504 23.50801 0.345341625779 0.958173296825 4747 1222 1222;4747 21.74234 0.3887 -7.41907 29.16141 0.461436945924 1.05010848657 3679 1009 1009;3679 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283361 10120 527518 chr19:15398588-15398809+ NoOverlap chr19 15398588 15398809 + 3.19983247225 74 0.866450359721 2.09534324988 1.10448922237 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15398587;222;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15398588-15398809%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15398588-15398809&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.519771152522 0.27982191651 0.595046013402 15509399 15509620 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15509398;222;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15398588-15398809%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15509399-15509620&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SRPPWQGAEEASRHRDLGAGPYLCRTSLSGPRGQLCLESPGAGRRRG*GRSSKSKSLRRRRQAPVREP*GQTDPTKGREGLSR Same 528964 chr19:15398588-15398809+ 9629 9629 491 34 2369 15398227 15398985 3366 3366;10120;48375;70640 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15398227-15398985&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.698198198198 0.607179487179 -0.836940540541 0.9481 -1.66335945946 0.826418918919 0.115083716852 0.475360243235 14383 5988 5988;14383;14592;72008 -7.72528648649 0.4382 -8.65254864865 0.927262162162 0.00276960087498 0.52989600242 33994 13120 13120;33994;57525;64726 0.0 0.0212260689407 chr1:154429196-154429444+ ENST00000624704.1,ENST00000596750.2,ENST00000397410.9 NC,AntiNC,AntiCDSintron not annotated potentially spurious 10134 582001 chr7:100882767-100882883- NoOverlap chr7 100882767 100882883 - 3.15054103761 39 0.828377476901 -0.0762358277272 3.22677686533 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100882766;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100882767-100882883-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100882767-100882883&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.311228318424 0.279606205352 0.794554693248 100480388 100480504 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100480387;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100882767-100882883-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100480388-100480504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPEQSHSAKPLHCAQQCPGLSAWPGPRSSAQGLMYGLGMVGVEVGLLRAPSMSGCSSQFWLFSR Same 582961 chr7:100882767-100882883- 10100 10100 34 0 402 100882699 100896048 564 564;2139;2309;3733;10134;33066;33794;47001;47408;61791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100882699-100896048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.675213675214 0.573529411765 0.21858974359 0.9512 -2.06700769231 2.2855974359 0.116639895031 0.615645948696 14242 1085 1085;2762;12277;14242;15089;33604;35393;48431;52932;53395 -5.60615384615 0.4536 -6.61638717949 1.01023333333 -0.00889112675355 0.506423408391 40273 1829 1829;3172;9515;15507;19629;23787;40273;49567;60478;62610 0.0 0.0 ENST00000423692.5,ENST00000611405.4 AntiNC,AntiCDSintron pseudo-exon UFSP1 is a retrogene that has apparently evolved to use a downstream ATG, so this is 5' pseudo-exon sequence 10157 475504 chr1:204377671-204377706- NoOverlap chr1 204377671 204377706 - 9.34433332706 12 0.626807558302 1.45416662283 7.89016670423 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204377670;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204377671-204377706-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204377671-204377706&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.259678203981 0.279270019716 0.963411945762 204346799 204346834 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204346798;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204377671-204377706-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204346799-204346834&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGAQRARGAAGTPR Same 477389 chr1:204377671-204377706- 11103 11103 -946 0 537 204359879 204378165 815 815;1426;2477;10157;27979;29433;67476 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204359879-204378165&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.722222222222 0.541353383459 2.66568333333 0.8054 0.0927916666667 2.57289166667 -0.000126992199547 0.460052582169 41567 683 683;986;1894;9248;41567;43122;51633 0.219308333333 0.3894 -3.8819 4.10120833333 0.00200619083668 0.501751256633 34362 208 208;1881;2415;9734;19689;34362;42976 0.0 0.0 not annotated putative regulatory region 10164 562907 chr4:149563803-149563850- NoOverlap chr4 149563803 149563850 - 5.20041241124 16 0.845593957427 -1.75213123485 6.9525436461 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;149563802;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149563803-149563850-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A149563803-149563850&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.192880100834 0.279212371659 0.981885676076 150484955 150485002 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;150484954;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A149563803-149563850-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A150484955-150485002&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDSKVKRIGPHIEIFQVFR Same 563903 chr4:149563803-149563850- 9928 9928 236 0 141 149548480 149563850 169 169;941;3606;10164 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:149548480-149563850&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.354166666667 0.666666666667 9.07136875 1.0 -4.84825 13.91961875 0.716546775084 1.04793657295 2019 74 74;1345;1356;2019 10.89383125 0.4371 -8.71001875 19.60385 0.556258695034 1.02344478003 3323 137 137;2480;3119;3323 0.0 0.0 ENST00000511993.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 10199 589326 chr9:82428199-82428285+ NoOverlap chr9 82428199 82428285 + 4.83895854678 29 0.40860608835 -0.82561725468 5.66457580146 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;82428198;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A82428199-82428285%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A82428199-82428285&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0828558514254 0.278446103782 0.973750565131 85043114 85043200 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;85043113;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A82428199-82428285%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A85043114-85043200&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EKEELIEEWQPEPLVPPVPKDHPALNYNIVSG Same 590273 chr9:82428199-82428285+ 10706 10706 -507 0 7154 82428199 82428285 Best 10199 10199 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:82428199-82428285&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.448275862069 0.0 1.11306551724 0.0046 -1.53570344828 2.64876896552 0.0452819577224 0.607036961162 24237 Best 24237 24237 3.31395172414 0.6609 -7.54115517241 10.8551068966 0.43674722873 0.886534070524 3800 Best 3800 3800 0.0 0.889009333532 chr9:92108740-92108834- ENST00000457558.7 NC pseudogene serine palmitoyltransferase long chain base subunit 1 (SPTLC1) pseudogene (ENSG00000228430) 10201 505785 chr14:105600354-105600398- NoOverlap chr14 105600354 105600398 - 7.76928654909 15 0.46843467867 -1.34250666127 9.11179321036 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105600353;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600354-105600398-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105600354-105600398&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132836908545 0.278349554121 1.04270908531 106066691 106066735 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106066690;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600354-105600398-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106066691-106066735&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LATGPRAAPEVYAFATPEWPGSR None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.711111111111 1.23529411765 16.9356466667 0.955 -6.19744666667 23.1330933333 0.809038142173 0.963476057596 1635 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 18.8245266667 0.4248 -5.56652666667 24.3910533333 0.677647491939 1.04799985435 2891 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0468455667141 chr20:45899836-45899878- ENST00000390541.2 NC immunoglobulin segment overlaps an immunoglobulin region 10238 569627 chr5:157690600-157690896- NoOverlap chr5 157690600 157690896 - 3.42794140737 99 0.311989814988 0.737493945982 2.69044746139 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;157690599;297;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A157690600-157690896-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A157690600-157690896&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.191437351058 0.277868997515 0.787812207668 157117608 157117904 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;157117607;297;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A157690600-157690896-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A157117608-157117904&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSSQSGPGRPPTSMERARLEPPPQPHPLSPAPSLLPVEGTSFWAAAVKTPPSPPMLCAAAIATVASSCREGLVPCAAQQLLEVKLEQVLLLPQPHVPGKGAASSPSGSSGPTCGSCCRPPLPR Same 570645 chr5:157690600-157690896- 8182 8182 2056 0 835 157689958 157690896 1295 1295;1973;10238;34106 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:157689958-157690896&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.693602693603 0.701530612245 4.71803838384 0.6172 0.545283838384 4.17275454545 0.582715793513 0.834929253447 2643 938 938;1196;2643;2918 3.77348585859 0.2748 -1.32039292929 5.09387878788 0.216579908688 0.725938392681 5825 405 405;2510;4099;5825 0.801036504553 chr5:157651112-157652078- 0.831451938773 chr5:157651112-157652078- pseudogene SRY-box 30 (SOX30) pseuodgene (ENSG00000253798) 10241 537022 chr2:227598893-227598934+ NoOverlap chr2 227598893 227598934 + 8.79214995248 14 0.696856641489 4.86553568499 3.92661426749 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227598892;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227598893-227598934%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227598893-227598934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.371863951975 0.277837929901 0.626858847728 228463609 228463650 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228463608;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227598893-227598934%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228463609-228463650&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLSTDTMGCCGCGGCGGCGGR Same 538392 chr2:227598893-227598934+ 10384 10384 -143 0 561 227598893 227617809 853 853;1652;2344;9463;10241;31196;35213 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227598893-227617809&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.477272727273 20.2470928571 0.8489 10.4172571429 9.82983571429 0.594593424315 0.868036704144 2569 692 692;818;1157;2569;3216;3360;61544 17.8729928571 0.5597 7.19073571429 10.6822571429 0.563768508746 0.73483087589 3286 2617 2617;3136;3286;3380;3692;5489;30629 0.0 0.104467810587 chr17:41123517-41124122- protein-coding gene (shared cluster) protein-coding genes ENSG00000284643, ENSG00000284622, ENSG00000284704, ENSG00000284631 10341 539823 chr2:110023200-110023280- NoOverlap chr2 110023200 110023280 - 4.16754804717 27 0.526449819011 -1.46252584016 5.63007388733 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110023199;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110023200-110023280-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110023200-110023280&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.103585265657 0.27606468092 0.963150272817 110780777 110780857 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110780776;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110023200-110023280-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110780777-110780857&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YAACRLCEAGTYRSRALDALPLQPCPPGFSCPQGESLGGLGR Same 541183 chr2:110023200-110023280- 10980 10980 -639 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.679012345679 0.557851239669 5.34519259259 0.7988 -4.81504814815 10.1602407407 0.553353544207 1.06454095722 2795 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 13.1391333333 0.5746 -3.54245925926 16.6815925926 0.861962951897 1.00694005713 2267 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 10342 555461 chr3:44421325-44421354- NoOverlap chr3 44421325 44421354 - 10.2177399755 10 0.781197833219 1.30652974844 8.91121022701 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;44421324;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A44421325-44421354-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A44421325-44421354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.274747902027 0.276016790619 0.977579321448 44462817 44462846 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;44462816;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A44421325-44421354-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A44462817-44462846&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNNVLTGNNWFSF Same 556416 chr3:44421325-44421354- 10678 10678 -336 0 2076 44421325 44421772 2995 2995;10342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:44421325-44421772&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.366666666667 0.0 14.91523 0.915 2.81112 12.10411 0.505928146198 0.975377476549 3103 1145 1145;3103 14.91523 0.286 2.81112 12.10411 0.176540188256 0.759822313464 6913 3371 3371;6913 0.0 0.0 ENST00000416124.1 NC pseudogene unitary pseudogene ENSG00000225873 10383 589078 chr9:66182325-66182456+ NoOverlap chr9 66182325 66182456 + 4.02719090765 44 0.317799649042 -1.17447956042 5.20167046807 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;66182324;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66182325-66182456%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A66182325-66182456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0690729446911 0.27530492197 0.999698814016 42338938 42338807 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;42338937;-130;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66182325-66182456%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A42338938-42338807&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSFSVGHNSHQPCSLSSGDDDHNWKIAHVVLKEEQEFR*LFQGTKGDPRNSTGGIYLDDITLDR Different 590025 chr9:66182325-66182453+ 10091 10091 292 22 3697 66182325 66188394 5129 5129;10383;13781;19517;25319;25601 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:66182325-66188394&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.462121212121 0.428571428571 13.4361636364 0.8761 1.32595681818 12.1102068182 1.06352283064 1.03910009654 119 27 27;119;165;833;1155;1409 38.1038613636 0.8483 4.28087045455 33.8229909091 0.960897451658 1.00186938748 1686 170 170;536;804;927;1082;1686 0.991354476191 chr6:46833074-46833538+ 0.969597769453 chr6:46833074-46833538+ pseudogene MEP1A pseudogene (ENSG00000284706); found after looking at high-scoring intergenic PCCRs 10409 521945 chr17:47896177-47896233- NoOverlap chr17 47896177 47896233 - 6.63832638295 19 0.919167339268 5.34104233588 1.29728404707 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;47896176;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896177-47896233-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A47896177-47896233&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.520970064936 0.274803072331 0.373456203776 45973543 45973599 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;45973542;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896177-47896233-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A45973543-45973599&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HRPPSNRQSRSPPPPERRQPSPISAWNIGDR Same 523370 chr17:47896177-47896233- 10574 10574 -165 0 443 47896176 47896544 633 633;10409;17370;20193;30561;56450;73094;73160 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:47896176-47896544&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.771929824561 1.17931034483 -0.0557105263158 0.9981 -6.63312105263 6.57741052632 0.138917265053 0.851815415909 12368 6473 6473;12368;17549;37782;39868;58958;68592;73642 -4.55666842105 0.4296 -10.2083842105 5.65171578947 0.02111225636 0.61291155579 26600 14976 14976;26600;36070;36380;45476;50232;50264;57233 0.0 0.0438311278841 chr2:74499333-74499537- ENST00000376741.4 AntiUTR5 not annotated putative regulatory region 10410 595943 chrX:153481809-153481895+ NoOverlap chrX 153481809 153481895 + 3.84612415166 29 0.616412919656 -0.957869017946 4.8039931696 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;153481808;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153481809-153481895%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A153481809-153481895&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.157416390858 0.274790241317 0.90664296101 152747267 152747353 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;152747266;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153481809-153481895%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A152747267-152747353&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TENEIAKIPAHTFLGLPNLEWLDLSKNKLDPR Same 596584 chrX:153481809-153481895+ 11263 11263 -853 0 1397 153481540 153486067 2093 2093;2101;2242;2901;9240;10410;14641;25631 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:153481540-153486067&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.551724137931 0.151041666667 2.99794827586 0.8101 -2.1723 5.17024827586 0.244666417376 0.832386181192 7126 1899 1899;2169;2617;3156;4527;4610;7126;15622 19.8569689655 0.8326 -6.60729655172 26.4642655172 1.00746426763 1.04693570803 987 550 550;891;987;1399;1497;1593;2015;2812 0.0 0.185442506689 chr9:92512011-92512126- ENST00000370210.3 AntiUTR5intron pseudogene unitary pseudogene ENSG00000224963 10444 511801 chr16:54632610-54632741+ NoOverlap chr16 54632610 54632741 + 1.81198856857 44 0.865185154359 -3.15448865024 4.9664772188 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54632609;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54632610-54632741%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54632610-54632741&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0131931140419 0.27423387271 0.983149339923 54666522 54666653 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54666521;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54632610-54632741%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54666522-54666653&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FDLNSANK*PSRSSNFSICLCSYKLKPHSSAAQNRAQYNSTLARR Same 513442 chr16:54632610-54632741+ 10052 10052 392 8 1038 54632610 54632996 1582 1582;10444 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54632610-54632996&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.477272727273 0.564102564103 -4.98807727273 0.9974 -6.92299090909 1.93491363636 -0.0958486607702 0.506300420866 73644 45691 45691;73644 -14.4177590909 0.9038 -16.8604363636 2.44267727273 -0.0472971753627 0.528218668353 70127 55151 55151;70127 0.0 0.0 not annotated putative regulatory region 10461 518061 chr17:48593931-48593957+ NoOverlap chr17 48593931 48593957 + 12.5576780637 9 0.938994430457 6.01354482439 6.54413323932 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48593930;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593931-48593957%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48593931-48593957&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.312299047342 0.273923312556 0.719512011566 46671293 46671319 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46671292;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593931-48593957%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46671293-46671319&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RSENR*GRFNASLR Same 519462 chr17:48593931-48593957+ 9363 9363 1098 3 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 1.92857142857 2.93098888889 1.0 0.518077777778 2.41291111111 0.00947225871291 0.413910999602 37020 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 4.41468888889 0.8918 -5.05653333333 9.47122222222 0.141385652423 0.689061112094 8461 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000239151.5,ENST00000552000.2 NCintron,AntiUTR5,AntiNCintron not annotated putative regulatory region 10481 591037 chr9:135616591-135616659+ NoOverlap chr9 135616591 135616659 + 4.80237823919 23 0.460805211951 -2.20710433825 7.00948257744 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;135616590;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A135616591-135616659%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A135616591-135616659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.070729588287 0.273692047089 1.0224577115 138508437 138508505 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;138508436;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A135616591-135616659%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A138508437-138508505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEGVCKETNITVHPTQLQGQYQGSCECPCPGSGLGSEWGGASK Same 591991 chr9:135616591-135616659+ 10673 10673 -192 0 846 135614297 135617015 1311 1311;7491;10481;14963 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:135614297-135617015&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.507246376812 0.226973684211 9.05420434783 0.6214 0.441739130435 8.61246521739 0.444820237204 0.988228738588 3552 1303 1303;1990;3552;3873 4.69635217391 0.2839 -2.64699565217 7.34334782609 0.173361652752 0.718865701724 7027 2809 2809;3460;7027;8972 0.0 0.143979487384 chr19:49882764-49882892+ protein-coding gene protein coding gene ENSG00000236543 10486 494605 chr12:22130471-22130527- NoOverlap chr12 22130471 22130527 - 5.25198943991 19 0.843775724502 0.45922090819 4.79276853172 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;22130470;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22130471-22130527-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A22130471-22130527&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.324858479753 0.273549894675 0.824962865206 22283405 22283461 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;22283404;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22130471-22130527-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A22283405-22283461&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FSTSILSGVTCHENYVLFLHEGIHWDADVIANIPNTRLTLTSPIELGDISK Same 496602 chr12:22130471-22130527- 10180 10180 306 0 58 22116633 22134940 65 65;1060;2224;6558;10486;27168 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:22116633-22134940&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.350877192982 0.0 7.87092631579 0.9583 -1.33071052632 9.20163684211 0.586127813022 0.992116108548 2619 904 904;2475;2558;2619;3486;6653 12.6683578947 0.5146 -3.59286842105 16.2612263158 0.672642751837 0.966012258426 2918 88 88;1118;2424;2918;3483;7533 0.0 0.0 ENST00000544732.5 NCintron pseudogene unitary pseudogene ENSG00000283582 10566 578140 chr7:57190300-57190362+ NoOverlap chr7 57190300 57190362 + 4.92479523023 21 0.392215718972 -4.75620970272 9.68100493295 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57190299;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57190300-57190362%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57190300-57190362&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.026976584671 0.272001206916 1.05221489138 57258007 57258069 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57258006;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57190300-57190362%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57258007-57258069&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MPQLDTSTRPIITVSTIITLFSIIQLK Same 579179 chr7:57190300-57190362+ 9899 9899 667 0 65 57190149 57192692 73 73;718;767;5573;6277;8782;10566 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57190149-57192692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.926470588235 18.7716047619 0.8019 -10.6055904762 29.3771952381 0.738579044379 1.03765034957 1937 832 832;1401;1806;1937;2083;2177;2604 42.0965857143 0.9258 -22.2264952381 64.3230809524 0.958082890974 1.02818389611 1726 1370 1370;1632;1670;1726;2011;2050;2238 0.858719490784 chrM:8366-8572+ 0.949127604771 chrM:8366-8572+ pseudogene MTCO3P4 mitochondrially encoded cytochrome c oxidase III pseudogene 4 (ENSG00000228851) 10568 497198 chr12:120216543-120216581- NoOverlap chr12 120216543 120216581 - 8.2598000123 13 0.749761431061 2.65976150219 5.6000385101 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;120216542;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A120216543-120216581-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A120216543-120216581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.323263158776 0.271981714021 0.812258000147 120654346 120654384 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;120654345;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A120216543-120216581-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A120654346-120654384&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQGEPGEVPPPLWAELAISSSSLSLLSSPQVVFPPGSPIPLRR Same 499206 chr12:120216543-120216581- 10566 10566 2 0 288 120216252 120219548 378 378;1189;3047;10568;22491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:120216252-120219548&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.564102564103 0.0 14.2451615385 0.9663 6.54318461538 7.70197692308 0.623855606514 0.815691504536 2418 479 479;873;2418;4055;5885 26.8561846154 0.8823 3.54935384615 23.3068307692 0.955664029587 1.007619584 1751 428 428;560;1751;2468;3435 0.0 0.0224249751249 chr16:31466079-31466889+ ENST00000323871.9,ENST00000228307.11,ENST00000538144.5 NC,CDSintron,NCintron coding exon(s) PXN 2 cassette exons 10594 572208 chr6:97885506-97885541+ NoOverlap chr6 97885506 97885541 + 6.9637833039 12 0.980605783169 -0.896000077327 7.85978338122 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;97885505;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A97885506-97885541%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A97885506-97885541&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.186796894886 0.271614297807 0.992765007624 98333382 98333417 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;98333381;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A97885506-97885541%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A98333382-98333417&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TANMISADKQEMDVIK Same 573233 chr6:97885506-97885541+ 11282 11282 -688 0 7407 97885333 97885567 Best 10594 10594;37193;66026 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:97885333-97885567&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 0.0 1.8092 0.9783 0.642575 1.166625 -0.000712778089624 0.342115364366 41858 15549 15549;28414;41858 0.815908333333 0.9295 -0.916391666667 1.7323 0.0141725172156 0.404187959528 29076 12957 12957;14696;29076 0.0 0.0 ENST00000606913.5,ENST00000607823.5 NC,NCintron not annotated potentially spurious 10599 536867 chr2:219269765-219269854+ NoOverlap chr2 219269765 219269854 + 2.62839996666 30 0.820770071972 -2.79788998986 5.42628995652 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;219269764;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219269765-219269854%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A219269765-219269854&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0644746111656 0.271556805524 0.966795263217 220134487 220134576 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;220134486;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219269765-219269854%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A220134487-220134576&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPVTRPSGEGDDSFNTFFSETGAGKHVPQAVFVDLEPAVMISPSHNLVPGYHSK Same 538235 chr2:219269765-219269854+ 10632 10632 -33 0 220 219269630 219279492 274 274;812;10599;20617;42437;70571 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:219269630-219279492&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.522222222222 0.333333333333 8.84281333333 0.9568 0.49182 8.35099333333 0.829247311049 1.01174748411 1561 408 408;491;1561;1860;15870;51627 43.67592 0.9287 19.3574433333 24.3184766667 1.00610583495 1.03977841477 1012 Best 1012 1012;1034;1527;1616;16190;55697 0.0 0.37160644247 chr12:49269465-49269687+ ENST00000490341.2,ENST00000473885.5,ENST00000398989.2 CDSintron,NCintron,AntiUTR5intron pseudo-exon TUBA4B pseudo-exon 10617 518055 chr17:48593317-48593505+ NoOverlap chr17 48593317 48593505 + 2.87559522617 63 0.825671003378 0.686061913798 2.18953331238 ENST00000239151.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48593316;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593317-48593505%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48593317-48593505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.370191562247 0.27127389237 0.731696965054 46670679 46670867 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46670678;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593317-48593505%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46670679-46670867&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRLVGGGRSRGLGAVAVAVGAGQGLGRGQGAARSRLPEAGLLGGRGEGARALAHRPKVAGGGR Same 519456 chr17:48593317-48593505+ 10193 10193 424 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.73544973545 0.870776656428 -2.47756825397 0.9862 -2.85738253968 0.379814285714 -0.010466207216 0.407533906227 47423 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -18.9961365079 0.8683 -23.6939111111 4.69777460317 -0.0415487052861 0.619834865605 66362 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000239151.5,ENST00000552000.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 10618 549847 chr22:30969400-30969435- NoOverlap chr22 30969400 30969435 - 8.4147082443 12 0.940643676407 2.6113499403 5.803358304 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30969399;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969400-30969435-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30969400-30969435&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.325352157741 0.271273760639 0.817050161727 31365386 31365421 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31365385;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969400-30969435-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31365386-31365421&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AANRSLDRPHAR Same 551188 chr22:30969400-30969435- 10282 10282 336 0 396 30968818 30969787 554 554;2215;5416;5709;10618;10639;64375;71711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968818-30969787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.722222222222 1.88235294118 1.70984166667 0.8335 -0.0275916666667 1.73743333333 -0.0154282362319 0.390404466962 50890 2943 2943;3632;14102;33814;35661;50818;50890;52885 1.60379166667 0.3279 -2.30730833333 3.9111 0.00289026119734 0.493267825427 33921 3899 3899;7559;12847;33921;34528;35006;48262;54755 0.0 0.0 under investigation; now made coding Identifies a putative CDS within exonic sequence of lncRNA TUG1. The STOP codon and reading frame are conserved in mammals, although no ATG initiation codon has been found. The 5' NPR terminus falls close to a [CTG] codon that is conserved in mammals, which would demarcate a single exon 153aa CDS [chr22:30969357-30969818]. This translation has now been experimentally confirmed by Lewandowski et al in a manuscript submitted to bioRxiv (https://www.biorxiv.org/content/10.1101/562066v1), and TUG1 will be annotated as a protein-coding gene in GENCODEv32. 10627 516573 chr17:13496512-13496577+ NoOverlap chr17 13496512 13496577 + 4.96688179265 22 0.962999646268 1.21253179556 3.7543499971 ENST00000284110.1,ENST00000578576.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;13496511;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A13496512-13496577%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A13496512-13496577&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.368754488545 0.271172201006 0.736047672095 13399829 13399894 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;13399828;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A13496512-13496577%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A13399829-13399894&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VADEPLAAHEEHLADGEVAQPVLQVLGVDADLDGAPRR Same 517955 chr17:13496512-13496577+ 11625 11625 -998 0 545 13496410 13496577 828 828;10627 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:13496410-13496577&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.636363636364 0.916666666667 -4.47634090909 0.9485 -4.69188181818 0.215540909091 -0.0693698967318 0.328403901773 73041 25392 25392;73041 -21.4381272727 0.9839 -21.8525818182 0.414454545455 -0.0250305594955 0.295371430521 52540 26444 26444;52540 0.0 0.0 ENST00000284110.1 AntiCDS not annotated potentially spurious 10637 489037 chr11:76712387-76712416- NoOverlap chr11 76712387 76712416 - 11.415280056 10 0.776601815824 5.59130998254 5.82397007346 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;76712386;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76712387-76712416-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A76712387-76712416&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.317150773638 0.271020116419 0.7109967865 76423431 76423460 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;76423430;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76712387-76712416-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A76423431-76423460&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IGENTCTQPGLGGQQVMVAWPCPMIAELLWTAPELLPGPGRPGR Same 491026 chr11:76712387-76712416- 10536 10536 101 0 85 76712306 76719866 98 98;1554;2355;2775;9069;9723;10637;30796 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:76712306-76719866&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.0 20.96435 0.9456 14.71952 6.24483 0.573971170862 0.556164891545 2689 88 88;186;1371;1479;2258;2338;2434;2689 59.45802 0.9568 27.68262 31.7754 0.970395613951 0.892493360129 1571 838 838;995;1128;1187;1347;1571;1780;2549 0.0 0.517523106029 chrX:109398549-109398698- ENST00000525328.1 NC pseudogene extension GUCY2EP extended [ENSG00000204529] 10639 549842 chr22:30969231-30969311- NoOverlap chr22 30969231 30969311 - 4.9171778361 27 0.873962739729 3.39126655128 1.52591128482 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30969230;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969231-30969311-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30969231-30969311&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.527661817667 0.271013724162 0.488247369002 31365217 31365297 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31365216;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969231-30969311-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31365217-31365297&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLLRSAPQLPSRLRRSARPRYCFFKWR Same 551183 chr22:30969231-30969311- 10640 10640 -1 0 396 30968818 30969787 554 554;2215;5416;5709;10618;10639;64375;71711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968818-30969787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.691358024691 1.17391304348 0.817581481481 0.8967 0.452825925926 0.364755555556 0.0169274714024 0.383715894073 33814 2943 2943;3632;14102;33814;35661;50818;50890;52885 -0.408240740741 0.3262 -0.652981481481 0.244740740741 0.00170903256646 0.440519521076 34528 3899 3899;7559;12847;33921;34528;35006;48262;54755 0.0 0.0 under investigation; now made coding Identifies a putative CDS within exonic sequence of lncRNA TUG1. The STOP codon and reading frame are conserved in mammals, although no ATG initiation codon has been found. The 5' NPR terminus falls close to a [CTG] codon that is conserved in mammals, which would demarcate a single exon 153aa CDS [chr22:30969357-30969818]. This translation has now been experimentally confirmed by Lewandowski et al in a manuscript submitted to bioRxiv (https://www.biorxiv.org/content/10.1101/562066v1), and TUG1 will be annotated as a protein-coding gene in GENCODEv32. 10674 583271 chr8:822158-822193+ NoOverlap chr8 822158 822193 + 8.90236657858 12 0.72800030518 2.46290002267 6.43946655591 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;822157;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A822158-822193%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A822158-822193&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.299004850704 0.270473484761 0.867454038955 772158 772193 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;772157;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A822158-822193%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A772158-772193&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PCAASLAAANPLPAPSPATMGTAQVQCDLALASCVCPSCGPYPAFAYFLL Same 584199 chr8:822158-822193+ 10960 10960 -286 0 7456 822158 822193 Best 10674 10674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:822158-822193&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.694444444444 0.24 5.43961666667 0.8013 -2.07531666667 7.51493333333 0.125057471965 0.85132648749 13516 Best 13516 13516 4.786025 0.3304 -3.661575 8.4476 0.079202634154 0.676599546264 13906 Best 13906 13906 0.0 0.0 ENST00000522092.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 10679 499800 chr13:51838501-51838536- NoOverlap chr13 51838501 51838536 - 6.21289991587 12 0.566625975942 -7.74589176973 13.9587916856 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51838500;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51838501-51838536-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51838501-51838536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0287966144906 0.270394560425 0.977796646839 52412637 52412672 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;52412636;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51838501-51838536-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A52412637-52412672&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARTMPGGLEKTCHQCISK Same 501807 chr13:51838501-51838536- 8845 8845 1834 0 7459 51838501 51838536 Best 10679 10679 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51838501-51838536&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.472222222222 0.545454545455 5.97959166667 0.6586 -14.9920583333 20.97165 0.322122334173 0.952695953387 5154 Best 5154 5154 7.213975 0.2452 -14.03715 21.251125 0.223299049403 1.03975624307 5682 Best 5682 5682 0.0 0.0 ENST00000626362.2 NC protein-coding gene protein coding gene ENSG00000281106 10682 495339 chr12:52411742-52411813- NoOverlap chr12 52411742 52411813 - 4.43143751596 24 0.506468553699 -1.9725959183 6.40403343427 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52411741;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52411742-52411813-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52411742-52411813&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0840685195965 0.270343851384 0.997657104647 52805526 52805597 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52805525;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52411742-52411813-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52805526-52805597&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSGISCPAVTSSHSSSNIFIVSKRWPTKESHSSHAPASTATPLKPSSFPAPR Same 497337 chr12:52411742-52411813- 11121 11121 -439 0 1140 52411742 52413387 1734 1734;10682;42415 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52411742-52413387&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.0 9.94499583333 0.8342 -3.781575 13.7265708333 0.786269481647 1.04891625793 1724 30 30;1724;4324 11.4288083333 0.3199 -2.9300875 14.3588958333 0.551203245241 0.948536240845 3341 821 821;3341;6104 0.0 0.0 ENST00000548135.1 AntiNCintron pseudogene extension KRT90P 2 exons added 10685 479632 chr10:129863194-129863220+ NoOverlap chr10 129863194 129863220 + 8.53242198626 9 0.843396658274 -2.32584416866 10.8582661549 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129863193;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129863194-129863220%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129863194-129863220&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.140290817762 0.270308854135 1.0365966377 131661458 131661484 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131661457;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129863194-129863220%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131661458-131661484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLTFLQQGEAHGNTK Same 481537 chr10:129863194-129863220+ 10256 10256 429 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.0 4.35521111111 0.998 -14.9199777778 19.2751888889 0.31324988839 0.980616522466 5336 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -9.84451111111 0.9279 -33.6665444444 23.8220333333 0.0261492789246 1.02153234031 24951 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 10695 529351 chr19:58581861-58581905+ NoOverlap chr19 58581861 58581905 + 6.49739346902 15 0.44452277409 -9.98150011698 16.478893586 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;58581860;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58581861-58581905%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A58581861-58581905&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0527695727301 0.270202895243 0.947342468425 59093228 59093272 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;59093227;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58581861-58581905%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A59093228-59093272&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NAACKNPALMRRVIPEGGYTLWLVFTMNK Same 530810 chr19:58581861-58581905+ 7784 7784 2911 0 462 58578105 58581980 664 664;10695;22905;23620;29825;45792 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:58578105-58581980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.622222222222 0.96256684492 15.28752 0.49 -7.59252 22.88004 0.3386140107 0.96243917926 4861 12 12;3572;4861;7429;7858;42404 29.6703733333 0.4473 -0.353486666667 30.02386 0.749003185267 1.04838689015 2636 2070 2070;2199;2636;3032;3216;7342 0.0 0.307581602734 chr16:89971359-89971922- ENST00000493504.1,ENST00000473164.1 NC,NCintron pseudogene CENPBD1P1 CENPB DNA-binding domains containing 1 pseudogene 1 (ENSG00000285138) 10697 595751 chrX:135397529-135397603+ NoOverlap chrX 135397529 135397603 + 4.10722794175 25 0.40036926833 -4.01429591656 8.12152385831 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;135397528;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A135397529-135397603%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A135397529-135397603&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.024493936785 0.270154657017 1.05937034481 134531454 134531528 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;134531453;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A135397529-135397603%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A134531454-134531528&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPTQNVLVFLINRQLGRHRSDINLSRWIWMLS Same 596393 chrX:135397529-135397603+ 10246 10246 451 0 7470 135397529 135397603 Best 10697 10697 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:135397529-135397603&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.48 0.231481481481 4.045936 0.4931 -4.073768 8.119704 0.173958861796 0.992870508561 10061 Best 10061 10061 4.045936 0.1541 -4.073768 8.119704 0.110912720082 0.763135484 10561 Best 10561 10561 0.0 0.0 ENST00000439434.1 NC pseudogene pseudogene similar to embryonic testis differentiation (M. musculus) (ENSG00000229015) 10766 515915 chr17:2213699-2213749+ NoOverlap chr17 2213699 2213749 + 4.13454121351 17 0.833235047281 -3.44700590127 7.58154711478 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2213698;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2213699-2213749%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2213699-2213749&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0586443994863 0.268945836501 1.02234604664 2116993 2117043 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2116992;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2213699-2213749%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2116993-2117043&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NTLKDGHCTDCNNKERGFASSQQQSLPR Same 517291 chr17:2213699-2213749+ 10639 10639 127 0 7511 2213699 2215813 Best 10766 10766;26566;59469 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2213699-2215813&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.529411764706 0.28021978022 -2.64185294118 0.9929 -5.36466470588 2.72281176471 -0.0359840176246 0.51508509316 64284 15508 15508;18461;64284 -8.23121764706 0.5346 -13.9154823529 5.68426470588 -0.0132236083384 0.582198175061 43013 8934 8934;24030;43013 0.0 0.0 ENST00000433167.2,ENST00000263073.10,ENST00000572205.5 NC,AntiCDSintron,AntiUTR5intron not annotated potentially spurious 10804 463502 chr1:15721341-15721394+ NoOverlap chr1 15721341 15721394 + 5.52494992957 18 0.913207531175 0.739433334933 4.78551659464 ENST00000375799.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;15721340;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A15721341-15721394%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A15721341-15721394&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.329805197098 0.268307442335 0.812873875479 16047836 16047889 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;16047835;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A15721341-15721394%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A16047836-16047889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IMILEMCFQQCRLYPAQTGKVGQSPLLPSFPVLQCFHAK Same 465368 chr1:15721341-15721394+ 10878 10878 -74 0 166 15721341 15731942 198 198;10804;69075 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:15721341-15731942&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.218623481781 0.817761111111 0.9986 -1.72461666667 2.54237777778 0.0560442151327 0.514836985693 21947 162 162;21947;66058 -7.8592 0.9295 -13.0158722222 5.15667222222 -0.0189525059058 0.57001458674 47280 854 854;47280;54613 0.0 0.0 ENST00000375799.7,ENST00000375793.2,ENST00000615472.1 CDS,CDSintron,AntiNCintron under investigation PLEKHM2 has a PhyloCSF signal that changes frame within coding exon 9. The signal in that frame ends after approximately 130bp, prior to a STOP codon, and resumes in the original frame later in the same exon. The event is supported by PhyloCSF in the chicken genome [ICGSC Gallus_gallus-4.0/galGal4 ~chr21:4,217,442-4,217,718). Under investigation as a potential programmed frameshift. 10866 530996 chr19:35900513-35900539- NoOverlap chr19 35900513 35900539 - 13.7353887459 9 0.730642659139 7.77838877837 5.9569999675 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35900512;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35900513-35900539-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35900513-35900539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.297455582603 0.26726449386 0.613172294916 36391415 36391441 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36391414;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35900513-35900539-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36391415-36391441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGTRRRLRGGNSEAGAAPRPRPWGPAIHATESPR Same 532463 chr19:35900513-35900539- 11084 11084 -218 0 275 35897702 35900539 360 360;1428;9480;10866 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35897702-35900539&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.888888888889 1.0 3.44284444444 0.9339 -5.96077777778 9.40362222222 0.0718300300988 0.931590894803 19414 295 295;1255;2053;19414 -3.11708888889 0.478 -10.4487777778 7.33168888889 -0.0186055110998 0.604942159814 47030 65 65;3028;5032;47030 0.0 0.0945417738518 chr8:22139963-22140083- ENST00000396901.5,ENST00000588039.5,ENST00000606253.5 UTR5,NC,UTR5intron coding exon(s) NFKBID 5' extension 11054 584058 chr8:39558419-39558448+ NoOverlap chr8 39558419 39558448 + 6.16528002433 10 0.71850156405 -5.95874979198 12.1240298163 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;39558418;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A39558419-39558448%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A39558419-39558448&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0167706878654 0.263408985531 1.02539547087 39415938 39415967 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;39415937;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A39558419-39558448%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A39415938-39415967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") *YTYLGNHVCVSTFLR Same 584988 chr8:39558419-39558448+ 10863 10863 191 1 3376 39557357 39558448 4684 4684;11054;68564 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:39557357-39558448&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.3 0.0 11.23282 0.7857 -19.88611 31.11893 0.288303249678 1.04858181275 5907 3923 3923;5907;25343 11.48878 0.3053 -24.42562 35.9144 0.260378995946 0.979555076447 5072 3640 3640;5072;8540 0.0 0.140170265622 chr8:39233899-39234082+ ENST00000518465.1 NC pseudogene extension ADAM family pseudogene extended ENSG00000254067 11070 589095 chr9:68304175-68304252+ NoOverlap chr9 68304175 68304252 + 2.9908538071 26 0.546203731418 -3.92365775659 6.91451156369 ENST00000342833.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;68304174;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A68304175-68304252%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A68304175-68304252&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00654768296501 0.263118337553 1.03466813641 70919091 70919168 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;70919090;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A68304175-68304252%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A70919091-70919168&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAVLGGHLSASSALLRYQAVAEGSRLTSLAAPLGGEGTSPVFLVSPTPSSLANSAGPS Same 590041 chr9:68304175-68304252+ 11676 11676 -606 0 309 68303101 68304252 416 416;11070;41191 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:68303101-68304252&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.679487179487 0.448275862069 9.34247307692 0.8524 -4.85547307692 14.1979461538 0.837996735874 1.03934169363 1523 798 798;1523;53518 12.4029423077 0.5228 -7.87783846154 20.2807807692 0.890323201339 1.05682329283 2152 2132 2132;2152;49028 0.954267506649 chr9:116800-118119- 0.763283192211 chr9:116800-118119- ENST00000342833.3 CDS not annotated FOXD4L3 contains a frameshift relative to its presumptive parent gene FOXD4, resulting in a terminal 55aa region that is potentially translated in a different frame. FOXD4L6 has been maintained as protein-coding at the present time due to published evidence for its functionality, although the evidence presented is not unequivocal and it is possible that the gene is pseudogenic. See also FOXD4L6. 11071 591958 chr9:41127083-41127160- NoOverlap chr9 41127083 41127160 - 2.9908538071 26 0.546203731418 -3.92365775659 6.91451156369 ENST00000622588.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;41127082;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41127083-41127160-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A41127083-41127160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00654768296501 0.263118337553 1.03466813641 70919168 70919091 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;70919167;-76;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41127083-41127160-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A70919168-70919091&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAVLGGHLSASSALLRYQAVAEGSRLTSLAAPLGGEGTSPVFLVSPTPSSLANSAGPS Same 592912 chr9:41127083-41127160- 11677 11677 -606 0 310 41127083 41128234 417 417;11071;41192 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:41127083-41128234&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.679487179487 0.448275862069 8.88071923077 0.813 -4.64626153846 13.5269807692 0.791066433731 1.05070796146 1702 738 738;1702;54069 7.16165384615 0.5375 -8.78081538462 15.9424692308 0.667091647523 1.00956190638 2940 2080 2080;2940;51587 1.00107382549 chr9:116800-118119- 0.760927259306 chr9:116800-118119- ENST00000622588.1,ENST00000617940.1 CDS,AntiNCintron not annotated FOXD4L6 contains a frameshift relative to its presumptive parent gene FOXD4, resulting in a terminal 55aa region that is potentially translated in a different frame. FOXD4L6 has been maintained as protein-coding at the present time due to published evidence for its functionality, although the evidence presented is not unequivocal and it is possible that the gene is pseudogenic. See also FOXD4L3. 11098 569172 chr5:140575546-140575575- NoOverlap chr5 140575546 140575575 - 9.85469999313 10 0.867399099718 2.41557988971 7.43912010342 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140575545;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140575546-140575575-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140575546-140575575&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.282587785892 0.262655955275 0.901117239282 139955131 139955160 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139955130;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140575546-140575575-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139955131-139955160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DCPLLRVLAGEVVGEEAEGSLPWIVSWLLEGNNYSGLLLR Same 570185 chr5:140575546-140575575- 10278 10278 820 0 157 140570090 140575575 188 188;325;1178;1912;10102;11098 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140570090-140575575&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.7 0.277777777778 16.40495 0.9964 0.18747 16.21748 0.781780881756 1.00810543974 1745 143 143;737;966;1745;2012;3638 20.64725 0.4486 0.64594 20.00131 0.527983807986 0.958400480651 3430 94 94;445;458;3312;3430;3706 0.0 0.0 ENST00000507279.5 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 11110 558084 chr3:195909277-195909552- NoOverlap chr3 195909277 195909552 - 3.09088800435 92 0.497115049708 1.6074336981 1.48345430625 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;195909276;276;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195909277-195909552-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A195909277-195909552&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.287150209669 0.262404012626 0.637061301464 195636148 195636423 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;195636147;276;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195909277-195909552-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A195636148-195636423&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGSARPLGGKRVRWAEPVGGPRRVAQEERGGLSPALPEQQPQRVGVLSWGPQQLRGLKLGVEERGGVGPAVQEEGGVGPGLQERGGRGHEPSR Same 559058 chr3:195909277-195909552- 7731 7731 3379 0 319 195908695 195909767 435 435;1687;7715;11110;49936;55625;56550 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:195908695-195909767&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.811594202899 0.868367346939 7.52697608696 0.5813 4.49654021739 3.03043586957 0.662690226531 0.774305244699 2237 374 374;1346;2237;3722;53564;66857;67033 -0.217652173913 0.5421 -3.66700869565 3.44935652174 0.286908098149 0.654738345939 4762 2327 2327;2340;2709;4762;21424;33118;65052 0.0 0.16348053285 chr3:45225125-45226027- ENST00000468819.1,ENST00000458180.1 NCintron,AntiNCintron under investigation TNK2 contains a series of NPRs in its 5' UTR that highlight a reading frame and STOP codon that are conserved in placental mammals, although no ATG initiation codon has been identified. However, a [CTG] codon has been identified that corresponds well to the 5' end of the NPR region and a consistent initiation codon peak in ribosome profiling data, giving a prospective 153aa single exon CDS [chr3:195909582-195908695]. 11116 522784 chr17:64497052-64497096- NoOverlap chr17 64497052 64497096 - 7.542246749 15 0.686599018336 2.65842676957 4.88381997943 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;64497051;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64497052-64497096-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A64497052-64497096&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.313612552017 0.262299278441 0.771463797514 62493170 62493214 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;62493169;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64497052-64497096-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A62493170-62493214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTAAAGTQTCASGVGPAARKHAHLRCACAVASPDSVNGSGGLLGSVE Same 524218 chr17:64497052-64497096- 11427 11427 -311 0 785 64497052 64506947 1219 1219;1314;11116;12743;15272;20390;22680;57720;59551 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:64497052-64506947&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 1.1013986014 9.07858666667 0.8322 -4.52618 13.6047666667 0.474681122725 1.04747935764 3317 Best 3317 3317;9751;12985;29872;53023;54218;61045;63372;66796 6.69198 0.3496 -4.63976 11.33174 0.219734816566 0.809326814541 5759 Best 5759 5759;11482;17125;20897;41797;70711;70752;72223;73201 0.0 0.0 coding exon(s) DDX5 alternative first exon 11189 486131 chr11:115645239-115645283+ NoOverlap chr11 115645239 115645283 + 6.2122866869 15 0.925189084713 0.404973485072 5.80731320182 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;115645238;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A115645239-115645283%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A115645239-115645283&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.28328383481 0.261060050764 0.87994960687 115515957 115516001 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;115515956;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A115645239-115645283%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A115515957-115516001&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TAIIMHGKKPQIIGFH Same 488090 chr11:115645239-115645283+ 11295 11295 -106 0 7791 115645239 115645283 Best 11189 11189 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:115645239-115645283&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.377777777778 0.0 2.74666666667 0.9991 -2.30434 5.05100666667 0.155013441107 0.704835262088 11214 Best 11214 11214 0.00757333333333 0.5264 -6.50712666667 6.5147 0.0779967484006 0.627690728003 14065 Best 14065 14065 0.0 0.0 ENST00000564619.1 NC not annotated potentially spurious 11225 518080 chr17:48604928-48605077+ NoOverlap chr17 48604928 48605077 + 3.14552603841 50 0.873050736248 1.11329399325 2.03223204516 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48604927;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48604928-48605077%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48604928-48605077&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.402056962685 0.260492869394 0.686997977586 46682290 46682439 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46682289;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48604928-48605077%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46682290-46682439&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWSPEGRQCSDLGVVSKRMLHYNHQGNDKKFMFTIARPHDRRRPIAGFNHS Same 519481 chr17:48604928-48605077+ 11081 11081 144 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.546666666667 0.803571428571 -1.552032 0.9882 -1.190666 -0.361366 -0.0173280739049 0.362568967036 52271 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -9.164724 0.8827 -12.809662 3.644938 0.0328686197312 0.626456039912 22899 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000466037.6,ENST00000484302.3 NCintron,AntiUTR5 not annotated putative regulatory region 11237 479242 chr10:122778017-122778046+ NoOverlap chr10 122778017 122778046 + 11.2331098795 10 0.781506065461 5.86813011169 5.3649797678 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122778016;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122778017-122778046%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122778017-122778046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.312901269245 0.260301090729 0.668227938411 124537533 124537562 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124537532;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122778017-122778046%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124537533-124537562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGQSTTGHHEDASVICSGIFSPLIWALPVLECFK Same 481147 chr10:122778017-122778046+ 11087 11087 150 0 28 122749907 122802385 28 28;40;90;227;289;551;595;614;688;717;790;827;899;1553;1721;1731;2534;5205;7799;11237 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122749907-122802385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.333333333333 22.46062 0.8451 11.08843 11.37219 0.468673412023 0.832905938252 3356 233 233;312;441;597;607;704;735;925;947;1064;1098;1102;1105;1107;2011;2262;2289;2483;2905;3356 64.10925 0.9496 17.64755 46.4617 0.960288982074 0.981232333988 1690 1 1;68;234;512;681;704;1144;1199;1226;1322;1368;1418;1555;1607;1633;1690;1857;1867;1885;1909 0.0731852977747 chr10:122630961-122631281+ 0.201439914179 chr10:122618017-122618340+ ENST00000439464.6 NC pseudogene extension DMBT1P1 pseudogene was extended to cover additional homologies (ENSG00000176584) 11264 547916 chr22:17044888-17044998+ NoOverlap chr22 17044888 17044998 + 5.06874332708 37 0.389501792935 1.40367569795 3.66506762913 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;17044887;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A17044888-17044998%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A17044888-17044998&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.146163079831 0.259973336244 0.834416764662 17525778 17525888 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;17525777;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A17044888-17044998%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A17525778-17525888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNPENTAEVECGDVCDTGDRATVDEEGYIWFLGRSHDTINASG Same 549330 chr22:17044888-17044998+ 12088 12088 -824 0 7836 17044888 17047449 Best 11264 11264;33643;41243 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:17044888-17047449&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.558558558559 0.486842105263 -0.739983783784 0.0292 -2.05100810811 1.31102432432 0.0231935167878 0.505480086684 31309 27793 27793;29910;31309 11.5410837838 0.3094 0.575472972973 10.9656108108 0.622248417247 0.899552363904 3089 2371 2371;2648;3089 0.0 0.673377134207 chr12:7324273-7324400+ ENST00000414401.5 NC pseudogene cat eye syndrome chromosome region, candidate 7 unprocessed pseudogene (ENSG00000237438) 11316 512375 chr16:73227024-73227098+ NoOverlap chr16 73227024 73227098 + 4.16068805695 25 0.883241626612 0.362432006598 3.79825605035 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;73227023;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73227024-73227098%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A73227024-73227098&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.327561678647 0.259029240713 0.771048830784 73260923 73260997 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;73260922;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73227024-73227098%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A73260923-73260997&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NYRMIREY*IFDCFYTFWDTIKLDLR Same 514019 chr16:73227024-73227098+ 11267 11267 49 8 7878 73227024 73232264 Best 11316 11316;17985 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:73227024-73232264&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.32 1.04895104895 -1.128512 0.9931 -1.363756 0.235244 -0.0221814274346 0.353254956537 55608 18391 18391;55608 -4.102168 0.6049 -2.00152 -2.100648 -0.0307360697809 0.329438774114 57779 Best 57779 57779;68174 0.0 0.0 not annotated putative regulatory region 11339 478237 chr10:96980971-96981009+ NoOverlap chr10 96980971 96981009 + 8.33390761339 13 0.950392919814 4.55549998008 3.7784076333 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;96980970;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A96980971-96981009%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A96980971-96981009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.374655690378 0.25863515769 0.600654670769 98740728 98740766 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;98740727;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A96980971-96981009%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A98740728-98740766&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLNDLYTESQPGTEDLQPSDSGAMDVSTCNAGCAQLSTK Same 480131 chr10:96980971-96981009+ 11480 11480 -141 0 136 96980833 96981009 163 163;11339 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:96980833-96981009&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.538461538462 0.0 14.9262153846 1.0 7.60226923077 7.32394615385 0.703979785695 0.782682694278 2071 65 65;2071 22.2405307692 0.6359 4.14578461538 18.0947461538 0.825244497749 0.931879212278 2397 496 496;2397 0.0 0.0 ENST00000498444.5 NC coding exon(s) LCOR alternative final exon; overlaps single exon gene C10orf12 and thus allows for the two to be merged 11355 527007 chr19:6414920-6414964+ NoOverlap chr19 6414920 6414964 + 7.8495200634 15 0.765659062587 4.86001325448 2.98950680892 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;6414919;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6414920-6414964%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A6414920-6414964&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.403746097254 0.258399800001 0.534934236395 6414931 6414975 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;6414930;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6414920-6414964%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A6414931-6414975&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RREASSFNLWTQRMLPWR Same 528453 chr19:6414920-6414964+ 11166 11166 189 0 18 6396383 6424885 18 18;152;1552;1681;2470;11355;12316;12885;15770;20124;36825 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:6396383-6424885&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.577777777778 0.803571428571 -3.23190666667 0.8899 0.142726666667 -3.37463333333 -0.0149078761504 0.0721786165619 50538 228 228;1347;1830;2200;3049;3131;9882;24431;37923;50538;67562 -6.50473333333 0.4446 -2.89701333333 -3.60772 -0.0336648657624 0.220033768109 60354 237 237;2087;2298;2594;2633;2795;14442;22727;50962;60088;60354 0.0 0.0573990224989 chr19:47480298-47480407- ENST00000594496.5,ENST00000398148.7 AntiUTR3,AntiCDSintron pseudogene unitary pseudogene ENSG00000214347 11362 486541 chr11:125951104-125951136+ NoOverlap chr11 125951104 125951136 + 5.42342721332 11 0.684879002892 -6.35716359724 11.7805908106 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125951103;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125951104-125951136%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125951104-125951136&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0405615132586 0.258302985395 1.02795469382 125820999 125821031 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125820998;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125951104-125951136%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125820999-125821031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPCLGLGAAGHWQWSLLQPHPLPHPDPPEGQPSCAVHPSPEAVTLLCAWPGGLPPAQLQWEGPQGPGPTAPSNVTWSHAAAQLPSGSVFTCTGQHPALAPPALCTVMLCEWTQETPGL Same 488503 chr11:125951104-125951136+ 11015 11015 347 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.727272727273 0.2578125 8.51624545455 0.886 -7.81329090909 16.3295363636 0.376595404196 1.02282160048 4308 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 23.6179181818 0.603 -10.6058454545 34.2237636364 0.873538712858 1.03512054385 2219 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0 ENST00000529072.1 NC protein-coding gene protein-coding gene ENSG00000283703 11372 509843 chr15:89333771-89333812- NoOverlap chr15 89333771 89333812 - 6.72126421332 14 0.695506218051 -0.611835730927 7.33309994425 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;89333770;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89333771-89333812-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A89333771-89333812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.205082002762 0.258137536821 0.980651554165 89877002 89877043 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;89877001;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89333771-89333812-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A89877002-89877043&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAKLEPKARCSDSQRGGPCTNHEPPALEEGGR Same 511578 chr15:89333771-89333812- 11972 11972 -600 0 569 89330211 89335145 867 867;1516;6244;11372;42877;43590;44649;44946 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:89330211-89335145&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.619047619048 0.25 8.13797142857 0.934 -3.63890714286 11.7768785714 0.472800950992 1.03339415689 3329 991 991;1902;3329;4879;5570;8149;31414;32743 -0.741878571429 0.4263 -13.0717071429 12.3298285714 0.127831459059 0.844406631153 9286 1954 1954;9286;12402;21990;33671;37713;45376;71871 0.0 0.168119806479 chr2:74525009-74525202- ENST00000268124.9,ENST00000631044.2 UTR5,NC under investigation POLG contains a series of NPRs in the first and second coding exon that are out of frame to the annotated CDS (the POLG CDS is conserved in vertebrates). These NPRs in combination find a prospective alternative CDS with a STOP codon conserved in therian mamamls - found precisely at the terminus of the most 3' NPR - although no ATG initiation codon has been identified. However, a potential non-ATG initiation codon [CTG] at chr15:89333809 corresponds well with the beginning of the NPR series, creating a predicted 261aa CDS that is conserved in therian mammals. We have identified additional support for the translation of this alternative CDS within the mass spectrometry datasets provided by Pandey et al, specifically peptides [AAAAQPJGHPDAJER] and [AAAAAAAAAAAAAAATAASAAASAJJGGR] in CD8 cells. However, at the present time there is no evidence to suggest how this alternative CDS may be transcribed and translated, and it is unclear how to construct a transcript model. 11412 475836 chr1:214019740-214019850- NoOverlap chr1 214019740 214019850 - 3.29945951056 37 0.741303491635 -0.0134324270326 3.31289193759 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;214019739;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214019740-214019850-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A214019740-214019850&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.26294394847 0.257367573167 0.794702834701 214193083 214193193 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214193082;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214019740-214019850-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214193083-214193193&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TEQKEAGIWAQASGKEAGSRANEAFAAWDICQRNKEDVLGLCR Same 477726 chr1:214019740-214019850- 11914 11914 -502 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.54954954955 0.762013729977 -0.115362162162 0.9937 -3.0142972973 2.89893513514 0.139989709011 0.661062680166 12287 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -5.64921081081 0.7895 -8.37582162162 2.72661081081 0.0381598404634 0.574247854981 21466 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000261454.8 AntiCDSintron not annotated potentially spurious 11415 484040 chr11:32436892-32436921+ NoOverlap chr11 32436892 32436921 + 8.79111970663 10 0.890579079881 0.458120083809 8.33299962282 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;32436891;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A32436892-32436921%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A32436892-32436921&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.229197732783 0.257264664555 0.977763667534 32458438 32458467 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;32458437;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A32436892-32436921%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A32458438-32458467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTARRDGREATGCSPASCTWLAR Same 485979 chr11:32436892-32436921+ 10520 10520 895 0 7940 32436892 32436921 Best 11415 11415 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:32436892-32436921&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 1.02564102564 20.81306 0.9215 7.69267 13.12039 0.640350013778 0.925416499697 2350 Best 2350 2350 20.81306 0.288 7.69267 13.12039 0.248841547901 0.765856475571 5223 Best 5223 5223 0.0 0.0 ENST00000459866.1,ENST00000395900.1 NC,NCintron not annotated potentially spurious 11431 512291 chr16:72426167-72426235+ NoOverlap chr16 72426167 72426235 + 5.46579129281 23 0.830142539168 3.70215650615 1.76363478666 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72426166;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72426167-72426235%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72426167-72426235&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.492460454608 0.256982480639 0.48250276712 72460066 72460134 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72460065;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72426167-72426235%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72460066-72460134&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTLITFFPLNLILPQWSQHSGCFHTQQDKGRRLRHDTVPFQAEAGILDSSK Same 513935 chr16:72426167-72426235+ 11358 11358 73 0 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.579710144928 0.705882352941 -0.109873913043 1.0 -3.48540869565 3.37553478261 0.0804064467886 0.625193340688 18227 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -7.24535652174 0.6419 -9.62420869565 2.37885217391 -0.0193997042991 0.490122133069 47621 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000564508.2,ENST00000561611.2,ENST00000624829.3 NC,AntiNC,AntiNCintron not annotated potentially spurious 11491 588651 chr9:23826305-23826373+ NoOverlap chr9 23826305 23826373 + 5.69176519111 23 0.964491592611 4.8899477785 0.80181741261 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23826304;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23826305-23826373%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23826305-23826373&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.52113820144 0.256029314486 0.353965199496 23826303 23826371 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23826302;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23826305-23826373%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23826303-23826371&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WTGPQIYSTVSPTPSLPPHCRVCSCSARLLSRAARAEVYAESR Same 589597 chr9:23826305-23826373+ 11919 11919 -428 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.652173913043 0.958333333333 2.49990869565 0.9992 1.23561304348 1.26429565217 0.137933345203 0.441799423882 12452 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -3.46042173913 0.6202 -7.98664782609 4.52622608696 0.0564651273365 0.595078055891 17477 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000380117.5 AntiUTR5 not annotated putative regulatory region 11541 554449 chr3:187744855-187744923+ NoOverlap chr3 187744855 187744923 + 4.96028250197 23 0.796475829378 1.83313911117 3.1271433908 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;187744854;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187744855-187744923%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A187744855-187744923&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.388423935369 0.255203720961 0.666804543173 187462643 187462711 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;187462642;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187744855-187744923%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A187462643-187462711&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSRTNPERSQAVRKQQQKERERER Same 555399 chr3:187744855-187744923+ 11437 11437 104 0 576 187739883 187745776 875 875;1104;7504;8158;11541;34107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:187739883-187745776&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.608695652174 1.25454545455 -3.05419130435 0.9013 -6.96114347826 3.90695217391 -0.0238800500323 0.649878659195 56743 3665 3665;8409;10256;24508;44991;56743 -3.29528695652 0.3442 -10.939626087 7.64433913043 0.0715492369649 0.725952562455 14939 5778 5778;12942;12969;14939;33269;59538 0.0 0.0 ENST00000450760.1,ENST00000406870.6,ENST00000470319.1 NCintron,AntiUTR5intron,AntiNCintron under investigation Finds a putative 38aa CDS antisense to the 5' UTR of BCL6. However, it is difficult to interpret the accuracy of the PhyloCSF signal here as the region has deep conservation over a wider region, presumptively due to being the promoter of BCL6, and the 38aa CDS has very low complexity. There is also very little transcriptional support for the locus in human or mouse. 11544 539522 chr2:89631890-89631964- NoOverlap chr2 89631890 89631964 - 6.01388002872 25 0.400701915007 1.01603597164 4.99784405708 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89631889;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89631890-89631964-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89631890-89631964&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.114251778431 0.255137579339 0.890526202826 91894141 91894215 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91894140;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89631890-89631964-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91894141-91894215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSTADISSNKDDEENSVLDMVVLFSSSDKFTLNQV Same 540877 chr2:89631890-89631964- 12331 12331 -787 0 1126 89622214 89637657 1710 1710;1943;6332;11544;19922;20755;36821;56146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89622214-89637657&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.386666666667 0.394736842105 19.064116 0.7616 8.256584 10.807532 0.835966470852 1.02238669715 1530 23 23;45;328;857;1530;2184;2340;8004 49.713056 0.8792 19.247168 30.465888 0.982032429098 1.04181798003 1390 334 334;1274;1390;1454;1567;1631;1812;2090 0.998471473973 chr7:152230220-152230321- 0.930454203121 chr7:152230220-152230321- pseudogene lysine (K)-specific methyltransferase 2C (KMT2C) pseudogene (ENSG00000283132) 11556 578757 chr7:99607681-99607779+ NoOverlap chr7 99607681 99607779 + 2.10914545439 33 0.68949370103 -3.54362424757 5.65276970195 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;99607680;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A99607681-99607779%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A99607681-99607779&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0567312917491 0.2549686673 0.996092804826 99205304 99205402 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;99205303;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A99607681-99607779%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A99205304-99205402&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSPCDPPGACAFLALVLHALEIKALRMKLGPLQFSVLWPYYVLGFGIFLFIVAGECPGNSALLLVLGLDLGTCLVEALPLDSLELHCSKPQLPVR Same 579800 chr7:99607681-99607779+ 12654 12654 -1098 0 714 99604416 99610562 1102 1102;1689;5751;11556 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:99604416-99610562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606060606061 0.33 3.82964242424 0.6941 -9.43176969697 13.2614121212 0.645259976833 1.07211660112 2328 1260 1260;2328;2849;12026 3.82964242424 0.217 -9.43176969697 13.2614121212 0.349961712522 0.975867833421 4228 3934 3934;4228;4926;15447 0.0 0.0 ENST00000431679.5 NC protein-coding gene protein coding gene ENSG00000244219 11564 479592 chr10:129842299-129842328+ NoOverlap chr10 129842299 129842328 + 6.83017995059 10 0.641532005798 -7.33684998155 14.1670299321 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129842298;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129842299-129842328%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129842299-129842328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0168713067246 0.254784597003 0.983084994857 131640563 131640592 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131640562;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129842299-129842328%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131640563-131640592&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPAAGASGSRPVTPGPAQLAALSGAHHGGIPLSLAQTMTK Same 481497 chr10:129842299-129842328+ 10296 10296 1268 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.7 0.277777777778 0.36752 0.8033 -11.88351 12.25103 0.0628966369868 1.03259727181 20782 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -3.03185 0.4551 -18.71612 15.68427 0.0758867724767 0.913584057218 14343 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 11571 534742 chr2:110347996-110348103+ NoOverlap chr2 110347996 110348103 + 3.83650831319 36 0.605051583971 0.379263901876 3.45724441132 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110347995;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110347996-110348103%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110347996-110348103&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.216878247264 0.254674214148 0.806046764925 111105573 111105680 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111105572;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110347996-110348103%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111105573-111105680&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QHEPAGLCLCSCVFPHYCPPGSAQPRACPGGSEALNGTSLRVSEEICCLPPL Same 536094 chr2:110347996-110348103+ 12389 12389 -818 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.638888888889 0.275042444822 10.8549277778 0.7527 1.19898611111 9.65594166667 0.891094050554 1.05197364434 1319 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 26.7676166667 0.6788 6.26529722222 20.5023194444 1.08059310675 1.03839231624 123 Best 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 11580 556152 chr3:70206606-70206785- NoOverlap chr3 70206606 70206785 - 2.23825327555 60 0.980047302968 -0.914858308434 3.15311158399 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;70206605;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A70206606-70206785-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A70206606-70206785&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.219211267583 0.254556661345 0.840618914425 70255757 70255936 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;70255756;180;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A70206606-70206785-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A70255757-70255936&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TIVGFCMCFFFFPLDTQLTNAKHADEKPINAIVINSVSDFNITDGPAKENPNEKKLSESSTSLSSLEECQTTFSYLQTDTSVHHR Same 557109 chr3:70206606-70206785- 10963 10963 617 0 473 70196929 70206785 692 692;11580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:70196929-70206785&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4 0.150501672241 2.45836333333 0.9998 -0.990711666667 3.449075 0.468470417494 0.789283463408 3359 795 795;3359 4.27039833333 0.6074 -2.79088 7.06127833333 0.493838454397 0.809254457176 3553 976 976;3553 0.0 0.0 ENST00000567252.1 NC protein-coding gene protein-coding gene ENSG00000242120 11586 588124 chr8:142806077-142806142- NoOverlap chr8 142806077 142806142 - 4.1998272484 22 0.591681752291 -2.20961814543 6.40944539383 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;142806076;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142806077-142806142-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A142806077-142806142&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0903942647805 0.254488712034 0.988511024221 143887493 143887558 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;143887492;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142806077-142806142-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A143887493-143887558&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APLHCGSQSLADNPAMRLLLVLLLLAAVCAALGKTLATPGEGQGQVAPGLGTPGPGAGR Same 589069 chr8:142806077-142806142- 12323 12323 -737 0 299 142797632 142806142 399 399;852;11586 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:142797632-142806142&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.621212121212 0.159420289855 -0.2276 0.8315 -7.33912727273 7.11152727273 0.119387556557 0.908541461457 14005 343 343;1715;14005 -2.23634545455 0.3604 -7.63139545455 5.39505 0.0461226143121 0.628794029575 19529 2323 2323;3159;19529 0.0 0.167061034837 chr10:132808421-132808904- ENST00000510610.2 AntiNCintron pseudogene lymphocyte antigen 6 complex, locus K (LY6K) pseudogene (ENSG00000283686) 11608 555627 chr3:49120940-49120972- NoOverlap chr3 49120940 49120972 - 5.73868171735 11 0.765801757562 -4.65179109573 10.3904728131 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;49120939;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A49120940-49120972-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A49120940-49120972&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00270207019323 0.254097911973 1.04753053874 49158373 49158405 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;49158372;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A49120940-49120972-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A49158373-49158405&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAPSPFPPEVRHQLGAPPPSALAR Same 556581 chr3:49120940-49120972- 11571 11571 37 0 525 49108464 49120972 782 782;6927;11608;22914;38563 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:49108464-49120972&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.69696969697 1.04761904762 2.39246363636 0.8826 -10.8360090909 13.2284727273 0.153600286311 1.04676391695 11326 1900 1900;11326;19488;30342;47390 -2.55349090909 0.4039 -10.3700090909 7.81651818182 0.00373409779873 0.643788600882 33524 2475 2475;12326;33524;38234;67129 0.0 0.0513266636365 chr20:62315948-62316058- under investigation USP19 potential non-ATG start 11638 523265 chr17:76568812-76568838- NoOverlap chr17 76568812 76568838 - 12.5827111668 9 0.696932088875 2.0354886055 10.5472225613 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;76568811;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A76568812-76568838-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A76568812-76568838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.26255503314 0.253559904116 0.968707253369 74564894 74564920 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;74564893;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A76568812-76568838-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A74564894-74564920&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GYSGALTLPSISPLQYDGSGRSVHFYHGS None NA NA 0 14 76568812 76569633 14 14;165;11638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:76568812-76569633&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.675 18.0787333333 0.931 13.0218333333 5.0569 0.427136997763 0.495384133723 3731 381 381;894;3731 12.0714777778 0.5444 -0.769111111111 12.8405888889 0.338218864189 0.788641325504 4311 23 23;501;4311 0.0 0.0 ENST00000585390.1,ENST00000225276.9 NC,CDSintron protein-coding gene protein-coding gene ENSG00000284526 11643 507527 chr15:81385659-81385784+ NoOverlap chr15 81385659 81385784 + 4.50092144696 42 0.358822802792 0.602885792653 3.89803565431 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;81385658;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A81385659-81385784%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A81385659-81385784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.112978173777 0.253477102841 0.883359181063 81678000 81678125 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;81677999;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A81385659-81385784%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A81678000-81678125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") Y*GEGIVYGTPEEVWDCVNPAVGGL*EKGDENVIGFEMI*NR Same 509256 chr15:81385659-81385784+ 12312 12312 -669 18 8075 81385501 81385784 Best 11643 11643;37044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:81385501-81385784&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.484126984127 0.382978723404 16.6063166667 0.782 4.38117619048 12.2251404762 1.08047171624 1.04340412769 47 Best 47 47;2022 16.6063166667 0.2444 4.38117619048 12.2251404762 0.756506792069 0.932264285919 2613 Best 2613 2613;4143 0.95805353509 chr15:81322408-81322540- 0.958175475804 chr15:81322408-81322540- pseudogene STARD5 pseudogene (ENSG00000284709); found after looking at high-scoring intergenic PCCRs 11645 541022 chr2:173198730-173198786- NoOverlap chr2 173198730 173198786 - 4.09482631244 19 0.966884710059 -2.57992631511 6.67475262755 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;173198729;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198730-173198786-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A173198730-173198786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0945489092943 0.253462906004 0.988200136726 174063458 174063514 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;174063457;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198730-173198786-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A174063458-174063514&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VQLTESLNLWEEEKRGWGHSTNGVYATEVLLK Same 542393 chr2:173198730-173198786- 13787 13787 -2142 0 8077 173198177 173198791 Best 11645 11645;14566;27301;64264;68000;70384;71375 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:173198177-173198791&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.526315789474 0.818181818182 0.578178947368 0.998 -3.11413157895 3.69231052632 0.0828654301528 0.624473018615 17915 Best 17915 17915;26281;30225;52527;56025;63590;73136 -5.37716315789 0.6065 -7.60233157895 2.22516842105 -0.0146425195773 0.467234450841 44044 26199 26199;30281;33015;38868;44044;58152;65076 0.0 0.0 ENST00000423106.2,ENST00000419609.5,ENST00000338983.7,ENST00000476618.5 NC,NCintron,AntiCDSintron,AntiNCintron not annotated potentially spurious 11664 484844 chr11:64241115-64241153+ NoOverlap chr11 64241115 64241153 + 8.45227697721 13 0.829219853161 4.96456925456 3.48770772265 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64241114;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64241115-64241153%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64241115-64241153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.378104121129 0.253150780261 0.561900297931 64008587 64008625 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64008586;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64241115-64241153%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64008587-64008625&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LRGRGEEVSGGHSPGWGEPGCK Same 486791 chr11:64241115-64241153+ 11229 11229 435 0 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.846153846154 0.96694214876 3.0489 0.9664 3.485 -0.4361 0.0130927009338 0.219481782468 35488 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 -14.9464461538 0.6819 -12.8201538462 -2.12629230769 -0.0135778454999 0.227460630447 43278 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.00631366440282 chr17:75843484-75843519- ENST00000309366.8,ENST00000536642.5 UTR5,NC under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 11684 534729 chr2:110340438-110340512+ NoOverlap chr2 110340438 110340512 + 2.95747195244 25 0.721813382162 -3.19397201061 6.15144396305 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110340437;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110340438-110340512%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110340438-110340512&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0256473971628 0.252801378005 0.991495038732 111098015 111098089 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111098014;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110340438-110340512%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111098015-111098089&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GIHVTAGGPCPLGHFCPVGTGVALPCPMGTFSG Same 536081 chr2:110340438-110340512+ 12326 12326 -642 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.68 0.0 10.063692 0.7811 4.447512 5.61618 0.530063824865 0.822610698682 2937 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 40.339564 0.7837 16.88446 23.455104 1.0238947788 1.02501554918 723 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 11688 593109 chr9:122905124-122905189- NoOverlap chr9 122905124 122905189 - 4.91267740185 22 0.929882020017 1.55029551956 3.36238188229 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;122905123;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905124-122905189-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A122905124-122905189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.375430988525 0.252728019309 0.687841758456 125667403 125667468 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;125667402;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905124-122905189-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A125667403-125667468&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGASVAKPRRRGAPGSGP*RPRPGPLR Same 594062 chr9:122905124-122905189- 12021 12021 -333 3 637 122905081 122905417 981 981;3503;11688;13684;41126;71692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:122905081-122905417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.818181818182 1.19166666667 -0.540013636364 0.8936 -2.22193181818 1.68191818182 -0.0103642504563 0.464826592026 47356 17978 17978;19658;42486;47356;64280;71470 -0.589454545455 0.3864 -2.87280454545 2.28335 0.026858293518 0.49875316946 24738 17127 17127;21574;24738;33390;36324;59653 0.0 0.0 ENST00000335387.9,ENST00000478216.1 UTR5,NC not annotated putative regulatory region 11692 505792 chr14:105601684-105601713- NoOverlap chr14 105601684 105601713 - 5.87969996929 10 0.591120775158 -10.9628198266 16.8425197959 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105601683;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105601684-105601713-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105601684-105601713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0440729319332 0.252665689139 0.944824195965 106068021 106068050 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106068020;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105601684-105601713-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106068021-106068050&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGSVLTASTQSPSVFPLTRCCK None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.8 2.96043 0.9584 -18.0184 20.97883 0.274474516217 0.957507011233 6232 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 4.67985 0.5334 -21.6435 26.32335 0.398875896054 1.07098276854 3969 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0734497911177 chr20:45907692-45907755- ENST00000390540.2 NC immunoglobulin segment overlaps an immunoglobulin region 11730 688883 chr22:50548128-50548166+ Extension chr22 50548128 50548166 + 7.58916920882 13 0.575154791039 -1.525238436 9.11440764482 chr22:50548128-50548190+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50548127;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50548128-50548166%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50548128-50548166&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.150760989083 0.251998939745 1.03688321325 50986557 50986595 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;50986556;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50548128-50548166%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A50986557-50986595&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YQEGQVSASWGNLIAMVLR Same 689476 chr22:50548128-50548166+ 12480 12480 -750 0 132 50546280 50548166 159 159;2208;2547;11730 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50546280-50548166&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.615384615385 0.0 12.2751923077 0.936 -5.62360769231 17.8988 0.644834644579 1.00313246765 2331 163 163;1188;1930;2331 14.0894307692 0.527 -11.4370153846 25.5264461538 0.680178055042 1.05791469415 2881 2034 2034;2111;2881;2938 0.0 0.128006821495 chr22:20465265-20465576- ENST00000395676.3 Extension5p coding exon(s) KLHDC7B 5' extension 11776 470920 chr1:26359999-26360052- NoOverlap chr1 26359999 26360052 - 6.26822219955 18 0.692301823453 1.96863893006 4.29958326949 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;26359998;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26359999-26360052-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A26359999-26360052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.310404019179 0.251303995393 0.752245778046 26686490 26686543 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;26686489;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26359999-26360052-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A26686490-26686543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGAPTAGAPGLSLAMAERCGGPGACLAHLLAGLGVR Same 472796 chr1:26359999-26360052- 12005 12005 -229 0 1345 26354279 26360113 2019 2019;2765;11776;20942 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:26354279-26360113&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.759259259259 0.516746411483 7.33862777778 0.9789 -4.12658333333 11.4652111111 0.621652741237 1.04788368784 2433 1489 1489;2433;6796;54936 1.80007777778 0.4143 -11.5640055556 13.3640833333 0.262380173419 0.909346857482 5046 3180 3180;5046;25356;44290 0.0 0.082563082502 chr14:21090536-21091140- coding exon(s) CRYBG2 3 alternative first coding exons 11798 510486 chr16:3144808-3144834+ NoOverlap chr16 3144808 3144834 + 10.5465777384 9 0.772187889423 -0.470711088429 11.0172888268 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3144807;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144808-3144834%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3144808-3144834&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.221173583771 0.250968008514 1.01748186326 3194809 3194835 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3194808;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144808-3144834%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3194809-3194835&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPHWSLVQLLTKVGTLEGEAQGSGAGPAVSAGSAVPP None NA NA 0 256 3144015 3150751 334 334;814;1899;3328;3506;5705;11798;14824;15461;50287;55094 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3144015-3150751&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.385714285714 17.3811333333 0.9922 3.27007777778 14.1110555556 0.747507123981 0.980903218113 1880 167 167;1186;1262;1661;1809;1880;2134;2541;2601;5815;43459 14.2185666667 0.5779 -3.70966666667 17.9282333333 0.511311804112 0.932175977061 3490 1889 1889;2882;2930;3314;3490;3499;6163;6623;16490;31726;59008 0.0 0.16997865448 chr19:1848202-1848358- ENST00000428155.1,ENST00000571356.5 UTR5,NC pseudogene extension CASP16P pseudogene extended (ENSG00000228146) 11841 515954 chr17:2401732-2401776+ NoOverlap chr17 2401732 2401776 + 7.85714019934 15 0.956603341726 6.32270662387 1.53443357547 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2401731;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401732-2401776%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2401732-2401776&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.442929285761 0.25029473079 0.346998393232 2305026 2305070 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2305025;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401732-2401776%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2305026-2305070&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGQHGMEQLHMDTPRRQPSV Same 517330 chr17:2401732-2401776+ 12349 12349 -508 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.711111111111 0.728744939271 2.39138666667 0.9931 -2.00119333333 4.39258 0.118470343836 0.649845621277 14078 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -2.24456 0.7237 -6.08564666667 3.84108666667 0.0163621390371 0.513662823119 28258 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 not annotated putative regulatory region 11844 479637 chr10:129868548-129868586+ NoOverlap chr10 129868548 129868586 + 6.6745538276 13 0.746830525086 -1.08359227731 7.7581461049 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129868547;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129868548-129868586%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129868548-129868586&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.188320510457 0.250252628317 0.996864592856 131666812 131666850 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131666811;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129868548-129868586%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131666812-131666850&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ICMSYYNGAAAPAAEAALLGR Same 481542 chr10:129868548-129868586+ 12123 12123 -279 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.487179487179 0.433333333333 3.96573846154 0.7643 -0.113369230769 4.07910769231 0.0448269753216 0.599411548425 24346 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 4.94166923077 0.5612 -2.01396153846 6.95563076923 0.155784951522 0.624672784273 7759 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 11855 481956 chr10:102403063-102403092- NoOverlap chr10 102403063 102403092 - 10.94690983 10 0.763215075914 5.2539999336 5.69290989637 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102403062;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102403063-102403092-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102403063-102403092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.296784976502 0.250086809633 0.712412173876 104162820 104162849 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104162819;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102403063-102403092-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104162820-104162849&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPPGLGPDRAGRGVRGR Same 483873 chr10:102403063-102403092- 11812 11812 43 0 470 102395633 102432561 680 680;6932;11855;22696;25308;48284;57642;69925;70124;70146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102395633-102432561&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.866666666667 1.2426035503 -0.11452 0.9954 -1.94651 1.83199 -0.0369310619795 0.385389317934 64824 2246 2246;9900;30034;37715;42789;48132;52915;53220;64824;73530 -11.0909 0.4923 -9.05322 -2.03768 -0.0126722404939 0.232522979059 42637 715 715;21243;24877;42637;43017;45832;46589;56731;57300;70842 0.0 0.0227992609935 chr11:65650569-65650715+ ENST00000020673.5 UTR3 coding exon(s) PSD alternative first exon 11900 479646 chr10:129871350-129871400+ NoOverlap chr10 129871350 129871400 + 5.69585299886 17 0.906132780418 0.892464699114 4.80338829975 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129871349;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129871350-129871400%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129871350-129871400&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.312727044943 0.24933620477 0.803674428704 131669614 131669664 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131669613;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129871350-129871400%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131669614-131669664&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ENGCFPSLVFNTVNNLPCFL*AQRTPWQTSTAAAGGIR Same 481551 chr10:129871350-129871400+ 11846 11846 54 2 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.607843137255 0.435897435897 0.370905882353 0.9427 1.73884117647 -1.36793529412 -0.0277838399538 0.185935425409 59150 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -5.99707058824 0.7217 -4.03434117647 -1.96272941176 -0.0430081672454 0.289333114888 67405 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 11912 482379 chr10:117551697-117551747- NoOverlap chr10 117551697 117551747 - 7.04441163119 17 0.886209883358 5.71824117794 1.32617045325 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117551696;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551697-117551747-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117551697-117551747&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.480118150066 0.2490817288 0.352029339952 119311208 119311258 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119311207;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551697-117551747-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119311208-119311258&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APLPDSHRGMASRKYLYSSAPRQPASTLDTLILPL Same 484306 chr10:117551697-117551747- 11885 11885 27 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.549019607843 1.0625 4.30481176471 0.9964 3.20725882353 1.09755294118 0.146683131085 0.374968742663 11783 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -1.25965294118 0.5184 -3.30158235294 2.04192941176 0.0123756073549 0.454615831832 29786 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 not annotated putative regulatory region 11956 518117 chr17:48633911-48633940+ NoOverlap chr17 48633911 48633940 + 10.4327899337 10 0.74866865034 3.13180000484 7.30098992884 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48633910;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48633911-48633940%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48633911-48633940&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.271457227887 0.248373360734 0.875780217817 46711273 46711302 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46711272;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48633911-48633940%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46711273-46711302&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLASAEPAARRALLSEESALTQPAPGR Same 519518 chr17:48633911-48633940+ 12294 12294 -338 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.833333333333 1.2 8.03671 0.6138 2.84026 5.19645 0.0589529072426 0.640861255649 21432 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 9.40259 0.2345 1.97391 7.42868 0.0470925499808 0.602576341713 19312 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000462131.1 NCintron not annotated putative regulatory region 11957 465042 chr1:42789876-42789926+ NoOverlap chr1 42789876 42789926 + 4.80322945863 17 1.0 -1.96087057363 6.76410003226 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;42789875;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42789876-42789926%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A42789876-42789926&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.12657511652 0.248363660395 0.978774077645 43255547 43255597 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;43255546;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A42789876-42789926%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A43255547-43255597&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DVTSALSLANMVLGLFSIIFSFSR Same 466902 chr1:42789876-42789926+ 15324 15324 -3367 0 113 42789876 42798195 135 135;762;863;3977;11957 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:42789876-42798195&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.549019607843 0.0 6.73630588235 0.9792 -2.01821764706 8.75452352941 0.490441731493 0.962583668671 3207 541 541;636;1178;1669;3207 18.4692882353 0.6825 -2.54168823529 21.0109764706 0.892311757707 1.02294112859 2144 279 279;926;1615;1912;2144 0.0 0.0493489149931 chr21:43789630-43789762+ ENST00000536543.5,ENST00000464081.1 NC,NCintron protein-coding gene protein-coding gene ENSG00000274386 11991 518081 chr17:48605028-48605066+ NoOverlap chr17 48605028 48605066 + 7.67798461364 13 0.87797125435 2.77745378017 4.90053083346 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48605027;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48605028-48605066%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48605028-48605066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.331964679223 0.247724687163 0.74619509894 46682390 46682428 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46682389;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48605028-48605066%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46682390-46682428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSCSRSPGHMTGAGQSLDSTTHK Same 519482 chr17:48605028-48605066+ 11425 11425 566 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.74358974359 1.33823529412 3.85552307692 0.9888 2.77461538462 1.08090769231 0.0685938594401 0.3375881387 19896 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -1.40628461538 0.9231 -10.8967461538 9.49046153846 0.0675354378317 0.729873214589 15565 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000466037.6 NCintron not annotated putative regulatory region 11999 555494 chr3:46719752-46719787- NoOverlap chr3 46719752 46719787 - 4.90733337402 12 0.911604486152 -4.24847515424 9.15580852826 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;46719751;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A46719752-46719787-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A46719752-46719787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0507324102529 0.247526266669 1.04397781271 46761242 46761277 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;46761241;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A46719752-46719787-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A46761242-46761277&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGPAFLSPVFLTGYILLGSLSSLWLL Same 556448 chr3:46719752-46719787- 12118 12118 -119 0 337 46719752 46719997 462 462;11999 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:46719752-46719997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.0 3.37273333333 0.9992 -4.78801666667 8.16075 0.19372589587 0.894931190314 9053 178 178;9053 -0.911183333333 0.4563 -8.35826666667 7.44708333333 0.0329344360097 0.639917900082 22881 1425 1425;22881 0.0 0.0795712826292 chr16:2821366-2821605+ ENST00000463091.2,ENST00000460241.1 UTR3,UTR5intron pseudogene unitary pseudogene ENSG00000261603 12005 577658 chr7:27141618-27141674+ NoOverlap chr7 27141618 27141674 + 4.69664211022 19 0.912046194681 -0.71078425489 5.40742636511 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27141617;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27141618-27141674%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27141618-27141674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.232910897467 0.247391545659 0.889398244534 27181237 27181293 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27181236;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27141618-27141674%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27181237-27181293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSIFFQDKAIQDKEMNRKQIYLYRR Same 578697 chr7:27141618-27141674+ 12293 12293 -288 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.438596491228 0.365384615385 -0.629252631579 0.9938 -2.87514210526 2.24588947368 0.00821584437987 0.493496192154 37568 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -13.0422526316 0.8566 -18.3864315789 5.34417894737 -0.0403214283716 0.542421682815 65490 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222726.3,ENST00000467897.2 NCintron,AntiUTR3,AntiNCintron not annotated putative regulatory region 12027 497299 chr12:121054019-121054045- NoOverlap chr12 121054019 121054045 - 14.6126891176 9 0.66259250782 10.6647223632 3.94796675444 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;121054018;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121054019-121054045-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A121054019-121054045&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.28774088917 0.246960210917 0.373736602741 121491822 121491848 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;121491821;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121054019-121054045-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A121491822-121491848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDTHPCHPPQSVSTGKGTMLNYSSDLDLILFLSCFSSVQDQAQLR Same 499311 chr12:121054019-121054045- 12603 12603 -576 0 1146 121053768 121059655 1742 1742;3390;7126;9195;12027;15420;18584 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:121053768-121059655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.818181818182 13.7517888889 0.6127 14.6909777778 -0.939188888889 0.0481943626729 0.095449754093 23561 2783 2783;4174;4538;6046;10102;15430;23561 24.0112333333 0.3404 16.4482555556 7.56297777778 0.231413509673 0.531796589939 5525 2866 2866;2878;4226;4741;5525;5554;8163 0.0 0.338278766992 chr12:121033461-121033743- pseudogene unitary pseudogene, orthlog of mouse 2'-5' oligoadenylate synthetase-like 2 (Oasl2) (ENSG00000283542) 12033 510113 chr15:98520256-98520291- NoOverlap chr15 98520256 98520291 - 8.60271666447 12 0.848195620661 3.97069157908 4.63202508539 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;98520255;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A98520256-98520291-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A98520256-98520291&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.336018309898 0.246895224124 0.685369135574 99063485 99063520 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;99063484;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A98520256-98520291-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A99063485-99063520&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGAGAPAEVFCLPTGEK Same 511848 chr15:98520256-98520291- 11432 11432 601 0 571 98520256 98520381 869 869;12033 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:98520256-98520381&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.0 18.210225 0.9581 5.80589166667 12.4043333333 0.747731596851 0.965404959616 1876 722 722;1876 21.3600833333 0.461 3.43878333333 17.9213 0.604080225939 0.92388671363 3154 1710 1710;3154 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 12046 552734 chr3:71003497-71003541+ NoOverlap chr3 71003497 71003541 + 4.3114666303 15 0.911768266321 -3.74424660603 8.05571323633 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;71003496;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71003497-71003541%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A71003497-71003541&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00299529778545 0.246749565098 1.03016529058 71052648 71052692 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;71052647;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71003497-71003541%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A71052648-71052692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KAKDNKNKKDGICHK Same 553675 chr3:71003497-71003541+ 12520 12520 -474 0 1139 71003497 71007603 1733 1733;12046;22344;31751;34119;35077;44486;44775 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:71003497-71007603&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.377777777778 0.0 -0.169913333333 1.0 -3.81798666667 3.64807333333 0.0198487811057 0.584394559955 32675 3178 3178;6887;32675;36085;37626;45905;46741;64024 -6.79249333333 0.9801 -10.2285466667 3.43605333333 -0.0287624419642 0.484288160499 55997 10807 10807;16615;30087;31390;48859;55997;64759;66587 0.0 0.0 ENST00000318789.8,ENST00000327590.8 AntiCDSintron,AntiNCintron not annotated putative regulatory region 12048 520742 chr17:28716900-28716941- NoOverlap chr17 28716900 28716941 - 6.89749265569 14 0.943892576486 1.61739979684 5.28009285884 ENST00000301043.10,ENST00000353676.9,ENST00000395242.6,ENST00000395243.7,ENST00000395245.7,ENST00000412625.5,ENST00000415040.6,ENST00000419712.7,ENST00000436730.7,ENST00000450529.5,ENST00000453384.7,ENST00000580843.6,ENST00000582934.1,ENST00000625712.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;28716899;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A28716900-28716941-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A28716900-28716941&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.305276087625 0.246743331769 0.81045408828 27043918 27043959 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;27043917;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A28716900-28716941-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A27043918-27043959&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLRLPGAPDRHRGVS Same 522156 chr17:28716900-28716941- 12252 12252 -204 0 204 28716900 28729058 248 248;2079;2289;12048 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:28716900-28729058&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.738095238095 0.525 6.22533571429 0.9578 -0.392307142857 6.61764285714 0.290920797051 0.808491642125 5830 513 513;2080;5830;56808 -17.0365285714 0.8599 -25.9497357143 8.91320714286 -0.040912172517 0.585471192486 65906 2890 2890;6873;48672;65906 0.0 0.254284090189 chr22:23150063-23150154+ ENST00000301043.10,ENST00000482688.5,ENST00000430132.6 CDS,NC,CDSintron protein-coding gene protein-coding gene ENSG00000109113 12061 479589 chr10:129840820-129840864+ NoOverlap chr10 129840820 129840864 + 6.22949989637 15 0.826971847105 0.617653274536 5.61184662183 ENST00000355311.9,ENST00000368648.7,ENST00000440978.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129840819;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129840820-129840864%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129840820-129840864&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.279015179667 0.246515638709 0.861543483813 131639084 131639128 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131639083;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129840820-129840864%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131639084-131639128&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RVTKTDTYCRRES*R Same 481494 chr10:129840820-129840864+ 11664 11664 397 1 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 1.07142857143 -0.16256 0.9847 -3.85726666667 3.69470666667 0.0145709271035 0.588410641489 34847 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -11.5991466667 0.9316 -14.1667 2.56755333333 -0.0467433451602 0.422867591527 69804 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDS not annotated potentially spurious 12068 493923 chr12:132118828-132118872+ NoOverlap chr12 132118828 132118872 + 9.49082660278 15 0.359745682968 2.26762002508 7.2232065777 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132118827;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132118828-132118872%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132118828-132118872&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.118630391555 0.246457527998 0.950406064542 132603373 132603417 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132603372;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132118828-132118872%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132603373-132603417&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VASLFCCQILGELGLTFFAFAGGMPPTPHAAQLAGQR Same 495914 chr12:132118828-132118872+ 13017 13017 -949 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 0.975232198142 24.5913933333 0.8228 4.57756 20.0138333333 0.629763372446 1.00375397519 2393 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 46.3866266667 0.8375 20.66586 25.7207666667 1.0111479346 0.966642548186 928 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.860421358655 chr12:131982093-131982478+ 0.854404199537 chr12:131982093-131982478+ ENST00000475841.2,ENST00000332441.7 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 12078 577696 chr7:27156672-27156755+ NoOverlap chr7 27156672 27156755 + 4.08557494104 28 0.878728923476 1.33764293364 2.7479320074 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27156671;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27156672-27156755%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27156672-27156755&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.38488838411 0.246287195901 0.663932803331 27196291 27196374 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27196290;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27156672-27156755%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27196291-27196374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSPQHVTAHMTASANLSSPHRWSRSAGPAAA Same 578735 chr7:27156672-27156755+ 11992 11992 86 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.702380952381 0.842105263158 0.363992857143 0.9865 -1.68693214286 2.050925 0.0851552103806 0.541215490326 17607 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -8.39344285714 0.7724 -13.7595785714 5.36613571429 0.0162930715094 0.634772475013 28278 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000519842.1 AntiUTR5 not annotated putative regulatory region 12103 553610 chr3:141738332-141738361+ NoOverlap chr3 141738332 141738361 + 9.35181016922 10 0.729456015869 -0.395420098305 9.74723026752 ENST00000273480.3,ENST00000393000.3,ENST00000480908.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;141738331;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141738332-141738361%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A141738332-141738361&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.212237595637 0.245958634773 1.0194731955 141457174 141457203 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;141457173;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A141738332-141738361%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A141457174-141457203&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PSAFPKPTSPPSAPRRRHGRRGRR Same 554559 chr3:141738332-141738361+ 13169 13169 -1066 0 225 141713327 141738361 281 281;1940;3192;3717;12103 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:141713327-141738361&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.766666666667 1.38461538462 -0.42458 0.8471 -16.21734 15.79276 0.108743613812 1.04622262511 14992 1721 1721;2098;2147;3697;14992 -13.09907 0.7112 -30.74289 17.64382 -0.00219230926702 0.880530483375 36452 2737 2737;2887;3244;3826;36452 0.0 0.0 ENST00000273480.3,ENST00000477012.5 CDS,NC redundant PhyloCSF signals are accounted for elsewhere on the list 12116 516761 chr17:27456338-27456382+ NoOverlap chr17 27456338 27456382 + 4.32645330429 15 0.740693268228 -4.29704678059 8.62350008488 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;27456337;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27456338-27456382%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A27456338-27456382&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000281381710723 0.245723388075 1.04434472077 25783364 25783408 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;25783363;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27456338-27456382%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A25783364-25783408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPEGGGRRQVRGVDYKSQHARPP Same 518150 chr17:27456338-27456382+ 12321 12321 -205 0 384 27456338 27456877 537 537;12116;24649;64231 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:27456338-27456877&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.755555555556 0.989010989011 -1.50233333333 0.7829 -11.8514933333 10.34916 0.0913297574354 1.01272644225 16864 1054 1054;13407;16864;37001 -9.82633333333 0.428 -19.8267666667 10.0004333333 0.00940901223466 0.723004879449 31000 1306 1306;11778;31000;38952 0.0 0.111891102177 chr11:67392654-67392782+ coding exon(s) KSR1 alternative first exons 12200 548685 chr22:38506111-38506194+ NoOverlap chr22 38506111 38506194 + 5.11067513909 28 0.857457846952 4.72196428637 0.388710852712 ENST00000396821.7,ENST00000403230.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;38506110;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A38506111-38506194%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A38506111-38506194&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.581620451158 0.244268921182 0.343864852981 38902116 38902199 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;38902115;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A38506111-38506194%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A38902116-38902199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPMAAAPPLLGRRQAQRSLAPTRCLPSQTPPSPPLSSETGAK Same 550055 chr22:38506111-38506194+ 12460 12460 -260 0 613 38506019 38506525 940 940;2348;12200;25104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:38506019-38506525&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.75 1.48440748441 0.542928571429 0.874 -0.713732142857 1.25666071429 0.0246078841398 0.469048020882 30760 5045 5045;8138;18258;30760 -6.19289642857 0.5059 -8.99272142857 2.799825 -0.000426438362243 0.538791966212 35577 5447 5447;9812;16286;35577 0.0 0.0 ENST00000396821.7,ENST00000216019.11,ENST00000432525.5 AntiCDS,AntiNC,AntiNCintron not annotated putative regulatory region 12214 579829 chr7:149294749-149294802+ NoOverlap chr7 149294749 149294802 + 5.63755557934 18 0.443154209371 -3.03441114558 8.67196672493 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;149294748;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A149294749-149294802%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A149294749-149294802&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0533724696062 0.24403807153 1.05046402512 148991840 148991893 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;148991839;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A149294749-149294802%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A148991840-148991893&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AHVAECTYTRAQCGKTFLQQSTLTPTTAR Same 580799 chr7:149294749-149294802+ 11911 11911 303 0 602 149294749 149295236 926 926;1752;12214 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:149294749-149295236&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.648148148148 1.02272727273 3.42893888889 0.4417 -2.84378333333 6.27272222222 0.039137186599 0.828612808721 25797 2415 2415;5799;25797 21.9364 0.773 -33.3798611111 55.3162611111 0.864039112541 0.893134227105 2257 807 807;817;2257 0.174917441585 chr7:149070423-149072473- 0.353358861136 chr7:149431776-149432932- ENST00000378052.5 NC pseudogene zinc finger family pseudogene (ENSG00000244560) 12261 475835 chr1:214019708-214019782- NoOverlap chr1 214019708 214019782 - 4.40878786564 25 0.737023575189 0.70718001835 3.70160784729 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;214019707;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214019708-214019782-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A214019708-214019782&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.295191599953 0.243296982467 0.758439969781 214193051 214193125 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214193050;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214019708-214019782-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214193051-214193125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SICGVGHLPTQQRRCAWALQMCQGPQSK Same 477725 chr1:214019708-214019782- 12517 12517 -256 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.45 -0.15364 0.9921 -1.009336 0.855696 0.02080984857 0.411682974234 32282 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -6.244328 0.7872 -4.86846 -1.375868 -0.0376987551161 0.352330733897 63479 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000261454.8 AntiCDSintron not annotated potentially spurious 12290 530325 chr19:15442667-15442699- NoOverlap chr19 15442667 15442699 - 7.53513646126 11 0.873272435964 -0.362818119201 7.89795458046 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15442666;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15442667-15442699-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15442667-15442699&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.201014027616 0.242869650407 0.981430793086 15553478 15553510 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15553477;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15442667-15442699-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15553478-15553510&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPPCHLRHPSDQQLVSAMLALTSGR Same 531788 chr19:15442667-15442699- 11618 11618 672 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.55 2.29294545455 0.9979 -5.77573636364 8.06868181818 0.119590988497 0.88048927508 13985 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 0.433281818182 0.4219 -5.14296363636 5.57624545455 0.0114392221685 0.554226687327 30153 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.0562794839826 chr20:63413450-63413581- ENST00000263381.11 CDSintron coding exon(s) WIZ 2 cassette exons 12301 513472 chr16:20721780-20721905- NoOverlap chr16 20721780 20721905 - 4.31039524149 42 0.291683833066 -0.691195281489 5.00159052298 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20721779;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721780-20721905-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20721780-20721905&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0646511639125 0.242640666935 0.979884489753 20733102 20733227 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20733101;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721780-20721905-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20733102-20733227&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFSLSITVLILVTANNLFQLFIE*EGVGIISFLLIS*RYS*ADTNAATLK Same 515119 chr16:20721780-20721905- 12691 12691 -390 24 1174 20720997 20722053 1782 1782;2457;4589;12301;12422;13695;22010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20720997-20722053&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.420634920635 0.182608695652 -1.1946547619 0.0124 -1.57775238095 0.383097619048 0.0197261950316 0.426796884343 32727 26036 26036;26102;32372;32727;36194;41718;53953 33.9433166667 0.6788 6.49831190476 27.4450047619 0.984739580751 1.0403945766 1352 937 937;1188;1352;1485;1530;1845;1949 0.0 0.884353015992 chrM:12337-14148+ ENST00000561584.5,ENST00000501740.6 AntiUTR5intron,AntiNCintron pseudogene mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene (ENSG00000283399) 12304 476957 chr10:23174706-23174753+ NoOverlap chr10 23174706 23174753 + 5.71718120202 16 0.77386224918 -0.18882494187 5.90600614389 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;23174705;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23174706-23174753%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A23174706-23174753&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.234944185462 0.242620119134 0.902004739543 23463635 23463682 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;23463634;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23174706-23174753%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A23463635-23463682&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGGHRGVCRHGDLRAPALK Same 478852 chr10:23174706-23174753+ 12206 12206 98 0 873 23173215 23174753 1346 1346;12304;15950;27589;28990;57664;61491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:23173215-23174753&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.645833333333 0.820512820513 1.96465 0.8778 -5.2662125 7.2308625 0.128125264315 0.875513148777 13233 Best 13233 13233;19886;24016;28278;48646;49514;73112 -5.1003125 0.5676 -14.2110125 9.1107 0.0560041318582 0.72884827305 17548 Best 17548 17548;26780;29885;33897;60100;60114;62222 0.0 0.204720141409 chr20:59191020-59194757+ not annotated putative regulatory region 12307 532017 chr19:52915203-52915304- NoOverlap chr19 52915203 52915304 - 4.79585289429 34 0.32140077821 -0.46257654446 5.25842943875 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;52915202;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A52915203-52915304-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A52915203-52915304&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0579527185866 0.242597038942 0.967931319017 53418456 53418557 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;53418455;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A52915203-52915304-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A53418456-53418557&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DVAIEFSQEEWKCLDPAQRTLYRDVMLENYRNLVSLGEDNFLPGDVPLWIFAFSLVSLGSCILA Same 533494 chr19:52915203-52915304- 12948 12948 -641 0 8473 52915203 52915304 Best 12307 12307 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:52915203-52915304&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.164516129032 7.79940588235 0.4143 -1.00652647059 8.80593235294 0.380781642524 1.04318615158 4252 Best 4252 4252 20.6541558824 0.4476 -8.00154411765 28.6557 1.07967309912 1.01731418997 125 Best 125 125 0.505394787168 chr19:52808007-52808133- 0.557130033478 chr19:52808007-52808133- ENST00000596623.1 NC protein-coding gene protein coding gene ENSG00000213793 12316 527002 chr19:6400159-6400239+ NoOverlap chr19 6400159 6400239 + 3.94644447609 27 0.731941936596 0.0131777127584 3.93326676333 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;6400158;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6400159-6400239%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A6400159-6400239&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.249216179591 0.242404766476 0.802774708332 6400170 6400250 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;6400169;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6400159-6400239%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A6400170-6400250&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IHPLPSQGIIPDMVSDNMLSRPESRGFLIDGFPQEVKQAMEFERIVSGPEVWVWVCACLCACVEV Same 528448 chr19:6400159-6400239+ 12712 12712 -396 0 18 6396383 6424885 18 18;152;1552;1681;2470;11355;12316;12885;15770;20124;36825 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:6396383-6424885&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.604938271605 0.558620689655 5.41659259259 0.8412 -3.11667407407 8.53326666667 0.514019311139 1.01825861088 3049 228 228;1347;1830;2200;3049;3131;9882;24431;37923;50538;67562 13.2433185185 0.4848 -4.1227037037 17.3660222222 0.855390523602 1.01882658195 2298 237 237;2087;2298;2594;2633;2795;14442;22727;50962;60088;60354 0.0 0.219801195292 chr9:127871823-127871939- ENST00000593563.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 12330 534725 chr2:110336203-110336235+ NoOverlap chr2 110336203 110336235 + 10.3949091462 11 0.56771329685 3.14900905978 7.24590008638 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110336202;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110336203-110336235%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110336203-110336235&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.227602092559 0.242206906222 0.886709196415 111093780 111093812 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111093779;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110336203-110336235%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111093780-111093812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VEGPALLPPWPHCGFQNLDPGDIPLSAQGTFRKAPGAAR Same 536077 chr2:110336203-110336235+ 13098 13098 -768 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 0.5 15.6197272727 0.6559 2.81706363636 12.8026636364 0.306302136398 0.99316961651 5475 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 29.2551636364 0.5546 7.29610909091 21.9590545455 0.8047584755 0.96334986847 2455 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 12344 472216 chr1:46466623-46466664- NoOverlap chr1 46466623 46466664 - 8.08264281069 14 0.890985187849 6.09107133746 1.99157147322 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;46466622;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466623-46466664-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A46466623-46466664&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.420694791957 0.242002734765 0.388990958815 46932295 46932336 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;46932294;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466623-46466664-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A46932295-46932336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSAICGLIPRDRSAAAPRGAAR Same 474094 chr1:46466623-46466664- 12240 12240 104 0 1039 46448320 46466815 1586 1586;4166;4364;6954;7001;12344;14948;21944;27913;29912;31134;37875;42326;63692;65303;68731;69308;69969;73272 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:46448320-46466815&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 1.0 2.41651428571 0.7975 2.13750714286 0.279007142857 -0.00696148867502 0.285003099717 45262 4552 4552;6553;11146;21508;25219;29368;31194;34313;35285;35620;41616;45262;45465;48699;48843;51388;55674;57607;70045 0.101078571429 0.3229 -0.916128571429 1.01720714286 -0.0145389510752 0.391229163439 43966 11286 11286;13413;13817;24293;29223;30818;32582;34899;38187;38198;39757;43966;44176;46982;51189;51970;55751;61426;67777 0.0 0.0 ENST00000455247.1 AntiNCintron not annotated putative regulatory region 12378 588882 chr9:35829874-35829960+ NoOverlap chr9 35829874 35829960 + 4.44458965803 29 0.880430830591 2.93192760287 1.51266205516 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35829873;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35829874-35829960%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35829874-35829960&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.482722550626 0.241536597007 0.503971755997 35829871 35829957 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35829870;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35829874-35829960%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35829871-35829957&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLPLVPPISHTLPLSQPRLKSGFQLPPALLLLLLFSVLGPGAGECR Same 589826 chr9:35829874-35829960+ 12368 12368 10 0 277 35829249 35842438 362 362;425;536;1007;2241;12378;33483;41023;50301;66958 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35829249-35842438&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.597701149425 0.128698224852 5.06393793103 1.0 0.657606896552 4.40633103448 0.487770186983 0.771746532731 3226 527 527;571;572;815;1277;3226;54814;57000;63888;72554 -12.2677206897 0.6494 -13.0481482759 0.780427586207 -0.0556538488387 0.425394917225 72919 753 753;986;1017;1241;1441;19083;51774;53783;58586;72919 0.0 0.131215609443 chrX:130012950-130016213+ ENST00000377988.6,ENST00000472010.1,ENST00000377996.5,ENST00000464519.6 UTR5,NC,UTR5intron,NCintron coding exon(s) TMEM8B 5' extension by 5 exons 12393 485953 chr11:111469916-111469942+ NoOverlap chr11 111469916 111469942 + 8.27529999945 9 0.923058925256 -1.21832218435 9.4936221838 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111469915;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111469916-111469942%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111469916-111469942&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.128512212055 0.241329694984 1.02110463318 111340641 111340667 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111340640;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111469916-111469942%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111340641-111340667&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ERDLLSKLIEMK Same 487911 chr11:111469916-111469942+ 11361 11361 1032 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.37037037037 0.0 13.3705888889 0.9792 -3.42897777778 16.7995666667 0.616411094164 1.01345806578 2456 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 15.6842888889 0.4714 -6.35687777778 22.0411666667 0.471528640586 1.00814681286 3648 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000356018.6 AntiCDSintron pseudogene unitary pseudogene ENSG00000255093 12422 513471 chr16:20721724-20721777- NoOverlap chr16 20721724 20721777 - 8.16621114148 18 0.293995574884 -1.41913335522 9.5853444967 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20721723;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721724-20721777-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20721724-20721777&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0665805961789 0.24084127051 1.05129763055 20733046 20733099 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20733045;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721724-20721777-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20733046-20733099&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSNPQAVLYNRISDTDFILAMA Same 515118 chr16:20721724-20721777- 13638 13638 -1216 0 1174 20720997 20722053 1782 1782;2457;4589;12301;12422;13695;22010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20720997-20722053&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.407407407407 0.45 -0.399166666667 0.0125 -1.28835555556 0.889188888889 0.0381733939559 0.369101675329 26102 26036 26036;26102;32372;32727;36194;41718;53953 48.3402055556 0.6839 3.96488333333 44.3753222222 1.0104330689 1.00246741948 937 Best 937 937;1188;1352;1485;1530;1845;1949 0.0 0.884426464683 chrM:12337-14148+ ENST00000561584.5,ENST00000501740.6 AntiUTR5intron,AntiNCintron pseudogene mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene (ENSG00000283399) 12425 521798 chr17:45519111-45519176- NoOverlap chr17 45519111 45519176 - 5.4631818262 22 0.464945865152 -0.330036384477 5.79321821068 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;45519110;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45519111-45519176-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A45519111-45519176&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.103352827103 0.240805827418 0.940254285279 43596477 43596542 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;43596476;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45519111-45519176-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A43596477-43596542&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHLPYFSAVNLDVESMLLPFIKLPTTGNSLAK Same 523223 chr17:45519111-45519176- 12878 12878 -453 0 76 45517900 45519352 86 86;4762;12425;22792 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:45517900-45519352&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.378787878788 0.44 2.1933 0.7791 -6.66203636364 8.85533636364 0.256360529048 1.00817601217 6777 1028 1028;2157;2339;6777 -0.462568181818 0.327 -10.9841136364 10.5215454545 0.164896666325 0.837623565189 7340 2008 2008;3658;3994;7340 0.887755083205 chr17:46548312-46549843+ 0.787604976976 chr17:46548312-46549843+ ENST00000581296.1 NCintron pseudogene LRRC37A4P transcribed unprocessed pseudogene (ENSG00000282331) 12453 548046 chr22:20704305-20704490+ NoOverlap chr22 20704305 20704490 + 3.69534191009 62 0.304812252502 0.197891960221 3.49744994986 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;20704304;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20704305-20704490%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A20704305-20704490&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.12966760225 0.240350501448 0.889998475462 21058593 21058778 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21058592;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20704305-20704490%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21058593-21058778&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPTCPPEPPPTCPPFALQALLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRANGLLPT* Same 549466 chr22:20704305-20704490+ 12011 12011 442 0 1508 20702136 20704490 2244 2244;3957;4169;8406;12453;12907;29209;29720;35559;56010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:20702136-20704490&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.704301075269 0.916901408451 7.00104354839 0.7592 -5.7390016129 12.7400451613 0.988241630423 1.02936454438 847 130 130;847;1263;1735;2520;3116;3637;4021;20091;38948 5.81225967742 0.4284 -7.62852258065 13.4407822581 0.702870864598 1.0050359615 2800 1022 1022;2706;2800;2896;3161;3297;5293;6158;8692;8932 0.583422715929 chr22:18530255-18530459+ 0.650323850229 chr22:18530255-18530459+ ENST00000419950.5 NC pseudogene transmembrane protein 191A pseudogene (ENSG00000226287) 12493 579864 chr7:150329868-150329918+ NoOverlap chr7 150329868 150329918 + 5.4259294438 17 0.52366090863 -2.74921759021 8.17514703401 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;150329867;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A150329868-150329918%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A150329868-150329918&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0721481241089 0.239787522325 1.03833967317 150026957 150027007 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;150026956;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A150329868-150329918%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A150026957-150027007&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AWLEFQGLMLGTLLWMRGLPLEGAAEDWQLQMLEQASLWLGR Same 580834 chr7:150329868-150329918+ 12676 12676 -183 0 66 150329868 150331248 74 74;1780;4082;12493 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:150329868-150331248&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.705882352941 0.485714285714 4.31887058824 0.6182 -10.1362764706 14.4551470588 0.32289739856 1.05328819843 5137 750 750;2072;2985;5137 5.4086 0.2277 -9.85088823529 15.2594882353 0.231794576273 0.952712776318 5518 2637 2637;3557;3566;5518 0.0 0.129874541748 chr17:45396916-45397024- ENST00000343855.5,ENST00000323078.7 UTR5,UTR5intron pseudo-exon ZBED6CL pseudogenic sequence upstream of ATG 12541 585506 chr8:141514697-141514771+ NoOverlap chr8 141514697 141514771 + 4.64925602555 25 0.540038147555 -0.268424001932 4.91768002748 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;141514696;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A141514697-141514771%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A141514697-141514771&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.137561256669 0.239090288644 0.888747058545 142524797 142524871 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;142524796;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A141514697-141514771%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A142524797-142524871&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAGMASSCPGTPSPAGLPPPSVATPGETLGEGGEWTGR Same 586444 chr8:141514697-141514771+ 13209 13209 -668 0 87 141514697 141518615 102 102;12541;53877 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:141514697-141518615&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.653333333333 0.137867647059 3.732272 0.8841 -7.541292 11.273564 0.531849723636 1.07897500588 2921 573 573;2921;10965 4.05492 0.3678 -6.677656 10.732576 0.327547070967 0.861477275435 4375 1525 1525;4375;7152 0.0 0.0 ENST00000427937.1 NC protein-coding gene protein-coding gene ENSG00000226490 12553 591615 chr9:27261849-27261935- NoOverlap chr9 27261849 27261935 - 3.3292793426 29 0.422858014801 -3.34855175327 6.67783109587 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;27261848;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A27261849-27261935-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A27261849-27261935&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0178865507882 0.238905438874 1.03478599644 27261847 27261933 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;27261846;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A27261849-27261935-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A27261847-27261933&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KLCCRCGKIYGVTPSG*HSRVEECNYQFGGVLSHK Same 592571 chr9:27261849-27261935- 12286 12286 267 12 8600 27245683 27261935 Best 12553 12553;13799;24810 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:27245683-27261935&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.436781609195 0.252173913043 -0.336813793103 0.5719 -12.730062069 12.3932482759 0.245687050508 1.10145346452 7096 Best 7096 7096;10355;41406 5.25873103448 0.3835 -16.9557448276 22.2144758621 0.746408340425 1.09514246577 2644 509 509;2264;2644 0.0 0.0 ENST00000425633.1 NC pseudogene REX1, RNA exonuclease 1 homolog (REXO1) unprocessed pseudogene (ENSG00000283945) 12601 572840 chr6:133953198-133953224+ NoOverlap chr6 133953198 133953224 + 11.6195221709 9 0.851519544264 5.30595519808 6.31356697281 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;133953197;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A133953198-133953224%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A133953198-133953224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.278161628654 0.238218675869 0.7332813086 134274336 134274362 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;134274335;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A133953198-133953224%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A134274336-134274362&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIYCRGEAAAASHPEQQSK Same 573867 chr6:133953198-133953224+ 11817 11817 784 0 211 133953198 133953686 259 259;12601;37187 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:133953198-133953686&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 1.22727272727 12.3211777778 0.9846 7.31753333333 5.00364444444 0.379820461341 0.572707075333 4264 1434 1434;4264;65751 10.3514777778 0.3623 5.38165555556 4.96982222222 0.0647124331265 0.487927026673 16045 3973 3973;16045;52796 0.0 0.0 ENST00000237264.8,ENST00000416965.5 UTR5,UTR5intron not annotated putative regulatory region 12637 492603 chr12:89352641-89352730+ NoOverlap chr12 89352641 89352730 + 3.58063332438 30 0.998090079093 -0.0135299841563 3.59416330854 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;89352640;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89352641-89352730%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A89352641-89352730&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.267392433563 0.237556796359 0.785643938915 89746418 89746507 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;89746417;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89352641-89352730%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A89746418-89746507&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RKGISAPDKPQCKQAATAGSAGGRRKKGRR Same 494585 chr12:89352641-89352730+ 14889 14889 -2252 0 1997 89351989 89353104 2898 2898;3067;8028;9679;12637;22392;31672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:89351989-89353104&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.9 3.13423333333 0.9925 -2.21843333333 5.35266666667 0.406999481386 0.853056740168 3934 Best 3934 3934;7220;23441;23638;59195;70262;73002 1.9936 0.7573 -9.56755 11.56115 0.40773657754 0.91591172087 3920 Best 3920 3920;22214;30464;33580;34681;56829;66039 0.0 0.0 ENST00000611513.1,ENST00000279488.7 NC,AntiUTR5 not annotated putative regulatory region 12731 491028 chr12:31015588-31015668+ NoOverlap chr12 31015588 31015668 + 5.98871851409 27 0.291294728008 -0.0311110726109 6.0198295867 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;31015587;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A31015588-31015668%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A31015588-31015668&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0547359009728 0.236175677808 0.98361441634 31168522 31168602 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;31168521;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A31015588-31015668%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A31168522-31168602&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAHPPPAGNPGHAGASVNPTIVSSHQADASVNLTIVSPHQAGASSILPAINFITTIINIKPAAMSQYQPPLFV Same 493005 chr12:31015588-31015668+ 13865 13865 -1134 0 5080 31015442 31015824 7035 7035;12731;13891 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:31015442-31015824&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.45 0.225692592593 0.0267 -0.911907407407 1.1376 0.0331426222553 0.450623373173 27586 Best 27586 27586;33217;38445 53.1417222222 0.6642 19.9609296296 33.1807925926 0.979719690694 1.04447323398 1428 1386 1386;1428;1639 0.0 0.816538231654 chrM:5904-7445+ ENST00000537555.1 NC pseudogene mitochondrially encoded cytochrome c oxidase I (MT-CO1) processed pseudogene (ENSG00000256984) 12743 522794 chr17:64505457-64505594- NoOverlap chr17 64505457 64505594 - 4.00523045141 46 0.73237267839 2.67053695088 1.33469350053 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;64505456;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64505457-64505594-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A64505457-64505594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.479934394871 0.235940373527 0.58057578079 62501575 62501712 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;62501574;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64505457-64505594-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A62501575-62501712&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VQNAGLGHGGGAFVTPPGGGAQNGSVEKMWRREKCETKGEAPPQRERRPADSAR Same 524228 chr17:64505457-64505594- 13540 13540 -797 0 785 64497052 64506947 1219 1219;1314;11116;12743;15272;20390;22680;57720;59551 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:64497052-64506947&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.695652173913 1.14597902098 -1.41023695652 0.9262 -1.67680869565 0.26657173913 -0.0200849407161 0.419458756365 54218 3317 3317;9751;12985;29872;53023;54218;61045;63372;66796 -9.3162326087 0.5514 -7.6311 -1.6851326087 -0.052556090292 0.395083097739 72223 5759 5759;11482;17125;20897;41797;70711;70752;72223;73201 0.0 0.0 ENST00000583239.5,ENST00000225792.9,ENST00000581697.5,ENST00000540698.6 UTR5,CDSintron,UTR5intron,NCintron coding exon(s) DDX5 alternative first exon 12762 511822 chr16:54931929-54931970+ NoOverlap chr16 54931929 54931970 + 7.84088571583 14 0.835904478523 5.11595009054 2.72493562528 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54931928;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54931929-54931970%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54931929-54931970&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.390695683179 0.23567937721 0.486670414453 54965841 54965882 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54965840;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54931929-54931970%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54965841-54965882&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISEKSVELRCIRDFSAGL Same 513463 chr16:54931929-54931970+ 12344 12344 418 0 496 54928752 54938880 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.595238095238 1.4 4.44827857143 0.9889 1.35395 3.09432857143 0.150230213188 0.522135593918 11571 Best 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -0.109392857143 0.4126 -1.46897142857 1.35957857143 -0.0069924139123 0.405072933932 39151 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.0 ENST00000320990.9 CDSintron not annotated putative regulatory region 12781 574599 chr6:34238271-34238306- NoOverlap chr6 34238271 34238306 - 5.65425821921 12 0.647807787188 -5.19176655014 10.8460247694 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34238270;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34238271-34238306-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34238271-34238306&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0100371270333 0.235449577015 1.04356482646 34206048 34206083 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34206047;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34238271-34238306-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34206048-34206083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTLQVSAPGRCRPAGGTRGQGAR Same 575631 chr6:34238271-34238306- 12893 12893 -112 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.888888888889 0.847058823529 3.45600833333 0.8902 -10.5207333333 13.9767416667 0.236524169283 1.04974229382 7401 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 5.62685833333 0.3613 -13.6162916667 19.24315 0.26160198561 1.01188484519 5055 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0 ENST00000311487.9,ENST00000478214.1 AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000186577 12802 498691 chr13:88571997-88572035+ NoOverlap chr13 88571997 88572035 + 10.1859847353 13 0.440604257267 -7.92550002612 18.1114847614 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;88571996;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A88571997-88572035%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A88571997-88572035&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.177808650468 0.235130550124 0.971588497168 89224252 89224290 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;89224251;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A88571997-88572035%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A89224252-89224290&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HRIIFLALIGQPLFTTLLLMK Same 500708 chr13:88571997-88572035+ 11871 11871 931 0 377 88571657 88572214 524 524;1355;2644;12802 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:88571657-88572214&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 1.2 0.778346153846 0.0936 -0.241661538462 1.02000769231 0.0302758213562 0.341264847098 28586 Best 28586 28586;29351;44731;58679 37.7862230769 0.7018 -13.4393538462 51.2255769231 0.976592097995 0.976118274177 1484 1232 1232;1484;1802;1828 0.0 0.800776210657 chrM:12337-14148+ pseudogene mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene (ENSG00000283130) 12816 595228 chrX:56563624-56563650+ NoOverlap chrX 56563624 56563650 + 13.787633578 9 0.769180166662 -8.16327759955 21.9509111775 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;56563623;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A56563624-56563650%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A56563624-56563650&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.309291590235 0.234938641874 0.978600324931 56590057 56590083 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;56590056;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A56563624-56563650%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A56590057-56590083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ITRRRRRRPR Same 595872 chrX:56563624-56563650+ 10802 10802 2014 0 590 56563562 56563899 901 901;12816;20244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:56563562-56563899&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 0.84375 6.89771111111 0.8255 -20.5151888889 27.4129 0.233149769629 0.979574681047 7515 Best 7515 7515;7953;72709 0.826577777778 0.4203 -32.5916222222 33.4182 0.233924023712 1.01615028188 5480 Best 5480 5480;31092;70650 0.0 0.0 ENST00000338222.6 UTR5 under investigation UBQLN2 potential non-ATG start 12827 490393 chr12:3200875-3200934+ NoOverlap chr12 3200875 3200934 + 6.24375984482 20 0.611961547265 2.51862486601 3.72513497882 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3200874;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3200875-3200934%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3200875-3200934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.281690362815 0.234799847155 0.704558271428 3310041 3310100 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3310040;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3200875-3200934%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3310041-3310100&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGRPLRPILGAMPPAPRTPRERREHGEVE Same 492369 chr12:3200875-3200934+ 13242 13242 -415 0 350 3199732 3201193 479 479;12827;29069;61461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3199732-3201193&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 1.0 2.230755 0.9894 -2.41281 4.643565 0.191464339272 0.718402839788 9159 294 294;9159;28137;48160 -5.226105 0.7323 -14.095475 8.86937 0.0808472843322 0.747947938267 13691 506 506;13691;30575;61204 0.0 0.0 ENST00000011898.9,ENST00000444315.6 UTR5intron,NCintron coding exon(s) TSPAN9 alternative 5' exon 12850 577686 chr7:27152504-27152563+ NoOverlap chr7 27152504 27152563 + 5.17213996649 20 0.70539406424 0.586324875057 4.58581509143 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27152503;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27152504-27152563%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27152504-27152563&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.252887063337 0.234569991176 0.812337212484 27192123 27192182 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27192122;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27152504-27152563%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27192123-27192182&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFPSLAISGQSTAEPGWKAELRSRQDGAEQK Same 578725 chr7:27152504-27152563+ 13174 13174 -324 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.65 0.631578947368 -0.29609 0.9798 -2.99531 2.69922 0.0271274558516 0.54210085252 29841 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -7.37955 0.7916 -13.61559 6.23604 0.00802591728592 0.630458388054 31573 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000498652.1 NC,AntiNC not annotated putative regulatory region 12866 577689 chr7:27152765-27152791+ NoOverlap chr7 27152765 27152791 + 13.1319220596 9 0.73740749218 9.23081101312 3.90111104647 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27152764;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27152765-27152791%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27152765-27152791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.287630879516 0.234322037801 0.417874157901 27192384 27192410 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27192383;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27152765-27152791%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27192384-27192410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLLHRRHLTTEAAPTWGLR Same 578728 chr7:27152765-27152791+ 13103 13103 -237 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 1.03846153846 15.4122777778 0.9886 7.92131111111 7.49096666667 0.561928265749 0.725621654916 2757 Best 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 7.12811111111 0.8518 5.2662 1.86191111111 0.0848338209175 0.372188544367 13168 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518947.6 NC not annotated putative regulatory region 12882 527297 chr19:12791718-12791744+ NoOverlap chr19 12791718 12791744 + 10.3931221962 9 0.803145053958 1.08407786985 9.30904432635 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12791717;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12791718-12791744%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12791718-12791744&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.224370698952 0.234119424305 0.980473031131 12902532 12902558 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12902531;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12791718-12791744%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12902532-12902558&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLQRGPERPRRDPPQTAWAAR Same 528743 chr19:12791718-12791744+ 12968 12968 -86 0 96 12775496 12806530 113 113;1182;3126;12882;12916;19147;21814;28171;30495;34266;70783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12775496-12806530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.851851851852 0.818181818182 -8.60311111111 0.8758 -13.3913555556 4.78824444444 0.0304731153889 0.632427333567 28502 845 845;1545;3224;5434;8474;11177;11868;16562;28502;47510;67609 -12.7165666667 0.579 -22.1266333333 9.41006666667 -0.0430310567301 0.623076312634 67420 40 40;3058;6466;7449;7608;8225;15095;31105;55016;67420;71961 0.0 0.0691513109857 chr22:21383859-21388778+ ENST00000302754.5,ENST00000589765.1 UTR5,AntiNCintron not annotated putative regulatory region 12885 527010 chr19:6424801-6424848+ NoOverlap chr19 6424801 6424848 + 5.70691248775 16 0.574958991379 -2.06839994341 7.77531243116 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;6424800;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6424801-6424848%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A6424801-6424848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0999262883444 0.234084065256 1.02003234263 6424812 6424859 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;6424811;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6424801-6424848%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A6424812-6424859&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STRPRSTLGTQPLGGRRGGR Same 528456 chr19:6424801-6424848+ 13518 13518 -633 0 18 6396383 6424885 18 18;152;1552;1681;2470;11355;12316;12885;15770;20124;36825 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:6396383-6424885&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.708333333333 0.727272727273 2.909875 0.7647 -6.12800625 9.03788125 0.17657135033 0.974930457245 9882 228 228;1347;1830;2200;3049;3131;9882;24431;37923;50538;67562 -0.78145 0.3923 -8.91825625 8.13680625 0.0751169636494 0.701737627428 14442 237 237;2087;2298;2594;2633;2795;14442;22727;50962;60088;60354 0.0 0.0453752071553 chr9:111483985-111484261- pseudogene unitary pseudogene ENSG00000214347 12907 548040 chr22:20702852-20702914+ NoOverlap chr22 20702852 20702914 + 6.01563809315 21 0.485247068996 0.99443334341 5.02120474974 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;20702851;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20702852-20702914%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A20702852-20702914&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.145928646767 0.233778090341 0.860987674114 21057140 21057202 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21057139;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20702852-20702914%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21057140-21057202&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLSAGAAQQAAAGQWEELSSQVRAGDGR Same 549460 chr22:20702852-20702914+ 13531 13531 -624 0 1508 20702136 20704490 2244 2244;3957;4169;8406;12453;12907;29209;29720;35559;56010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:20702136-20704490&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.650793650794 0.381818181818 -0.29679047619 0.754 -6.59003809524 6.29324761905 0.0672984506095 0.845990085725 20091 130 130;847;1263;1735;2520;3116;3637;4021;20091;38948 -2.58031428571 0.4482 -12.0563619048 9.47604761905 0.137050947085 0.787887050591 8692 1022 1022;2706;2800;2896;3161;3297;5293;6158;8692;8932 0.436612644039 chr22:18528817-18528867+ 0.431033837303 chr22:18528817-18528867+ ENST00000442222.5,ENST00000436618.5 NC,NCintron pseudogene transmembrane protein 191A pseudogene (ENSG00000226287) 12916 527291 chr19:12791308-12791382+ NoOverlap chr19 12791308 12791382 + 4.03086006641 25 0.793321431296 0.12464400053 3.90621606588 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12791307;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12791308-12791382%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12791308-12791382&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.270038491683 0.233524204769 0.784248442221 12902122 12902196 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12902121;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12791308-12791382%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12902122-12902196&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APPPAAPPSHPARGRCLQGHALPDSDASRLLPFPTLEEGGAGAR Same 528737 chr19:12791308-12791382+ 12866 12866 50 0 96 12775496 12806530 113 113;1182;3126;12882;12916;19147;21814;28171;30495;34266;70783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12775496-12806530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.68 1.0101010101 0.503384 0.9378 -3.01908 3.522464 0.0936755971282 0.655858187121 16562 845 845;1545;3224;5434;8474;11177;11868;16562;28502;47510;67609 -9.620068 0.5028 -8.325884 -1.294184 -0.0517175636017 0.342766127378 71961 40 40;3058;6466;7449;7608;8225;15095;31105;55016;67420;71961 0.0 0.0 ENST00000589765.1 AntiNCintron not annotated putative regulatory region 12968 493933 chr12:132125313-132125408+ NoOverlap chr12 132125313 132125408 + 7.06617183704 32 0.362012664988 5.02406557743 2.04210625961 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132125312;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132125313-132125408%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132125313-132125408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.228275339624 0.232635599773 0.59737523825 132609858 132609953 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132609857;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132125313-132125408%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132609858-132609953&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPQQSPQLTTVTAPRPRALLMGTTMANLQVARLVSVR Same 495924 chr12:132125313-132125408+ 14322 14322 -1354 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.305408271474 16.959453125 0.8589 11.4325625 5.526890625 0.91754237645 0.844844454367 1240 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 36.753221875 0.6454 19.044490625 17.70873125 1.04572498377 0.984277377648 395 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.949187184967 chr12:132064668-132064886+ 0.818434590781 chr12:132064668-132064886+ ENST00000332441.7 NC redundant PhyloCSF signals are accounted for elsewhere on the list 12997 541464 chr2:196990851-196990934- NoOverlap chr2 196990851 196990934 - 4.01358575853 28 0.999492637522 0.966203553336 3.04738220519 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;196990850;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A196990851-196990934-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A196990851-196990934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.321186898538 0.232192367763 0.702842783961 197855575 197855658 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;197855574;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A196990851-196990934-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A197855575-197855658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PLPCLHLRPGHTPALACAPNKDVADCLALILATMMPFSPSSTMMAVNFVCLK Same 542836 chr2:196990851-196990934- 15028 15028 -2031 0 367 196990683 196990934 511 511;12997 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:196990683-196990934&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.607142857143 0.533333333333 2.51284285714 0.9998 2.8368 -0.323957142857 0.124089698118 0.333692172453 13602 160 160;13602 23.0403964286 0.9914 16.4750678571 6.56532857143 0.772021977025 0.678408886484 2576 1213 1213;2576 0.0 0.352172256087 chr3:15670270-15670556- ENST00000493808.1,ENST00000282272.12 NC,CDSintron coding exon(s) ANKRD44 alternative final exon 13026 524090 chr18:26035323-26035367+ NoOverlap chr18 26035323 26035367 + 6.02426679532 15 0.910958520892 0.496406920751 5.52785987457 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26035322;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26035323-26035367%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26035323-26035367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.262287365286 0.231801925934 0.855433631946 23615287 23615331 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;23615286;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26035323-26035367%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A23615287-23615331&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQFCKVELQHFQRLCHTSITFTGTSQS Same 525526 chr18:26035323-26035367+ 12903 12903 123 0 548 26035069 26035971 832 832;4515;13026;18941 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26035069-26035971&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 0.681818181818 1.76741333333 0.9988 -2.72881333333 4.49622666667 0.100481273088 0.65866986328 15794 2301 2301;9434;15794;27273 -10.66978 0.805 -14.4954 3.82562 -0.0440597448421 0.477795230948 68131 3626 3626;17772;65195;68131 0.0 0.0 ENST00000580958.5,ENST00000269137.11,ENST00000269138.9 AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 13029 499799 chr13:51817024-51817074- NoOverlap chr13 51817024 51817074 - 7.29968231215 17 0.49196881774 2.03994118554 5.25974112661 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51817023;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51817024-51817074-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51817024-51817074&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.169563656158 0.231757058553 0.836747389293 52391160 52391210 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;52391159;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51817024-51817074-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A52391160-52391210&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLSKAVVIDDDDDDEYPWR Same 501806 chr13:51817024-51817074- 13814 13814 -785 0 8867 51816907 51817074 Best 13029 13029;44653 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51816907-51817074&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.549019607843 1.04615384615 11.9856411765 0.6959 -0.239870588235 12.2255117647 0.509649760792 1.04041104155 3073 Best 3073 3073;6165 33.8721470588 0.5629 13.3003588235 20.5717882353 0.927214337465 0.963456426431 1958 1788 1788;1958 0.0 0.0 ENST00000626362.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 13043 560727 chr4:185071452-185071478+ NoOverlap chr4 185071452 185071478 + 8.11481114229 9 0.907850766766 -1.36783324348 9.48264438576 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;185071451;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A185071452-185071478%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A185071452-185071478&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.117952302982 0.23163096608 1.02259914359 185992606 185992632 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;185992605;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A185071452-185071478%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A185992606-185992632&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RDEWETLAGIEAWG Same 561715 chr4:185071452-185071478+ 11975 11975 1068 0 3332 185071430 185071645 4626 4626;13043;31204;57826;61815 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:185071430-185071645&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.0 7.27275555556 0.9987 -2.84125555556 10.1140111111 0.316993401364 0.953437037107 5256 Best 5256 5256;7014;8229;65721;70306 -4.14687777778 0.8756 -9.14243333333 4.99555555556 -0.0356641974553 0.508246702662 61981 26011 26011;49583;61981;65284;66794 0.0 0.0 ENST00000509017.5 NCintron not annotated potentially spurious 13077 510863 chr16:20731714-20731740+ NoOverlap chr16 20731714 20731740 + 11.2362333073 9 0.780141230725 3.18555529912 8.05067800813 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20731713;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20731714-20731740%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20731714-20731740&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.248655430028 0.231078351092 0.891247161711 20743036 20743062 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20743035;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20731714-20731740%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20743036-20743062&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STAPYKYPRK Same 512501 chr16:20731714-20731740+ 13277 13277 -200 0 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.37037037037 0.0 19.4708555556 0.967 -0.821544444444 20.2924 0.730810821194 0.97779647365 1971 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 51.8846111111 0.7954 9.07538888889 42.8092222222 1.00637110962 0.993747553233 1006 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.868954601889 chr12:7326976-7327095+ 0.861178508066 chr12:7326976-7327095+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 13115 489709 chr11:118014707-118014742- NoOverlap chr11 118014707 118014742 - 8.46426655849 12 0.697306782635 2.23721651236 6.22705004613 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;118014706;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A118014707-118014742-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A118014707-118014742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.251765250068 0.230603748989 0.856526779744 117885422 117885457 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;117885421;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A118014707-118014742-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A117885422-117885457&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGLLPLEVLTLSFWIVFLGPNFVFNLYQIR Same 491695 chr11:118014707-118014742- 13635 13635 -520 0 296 118013793 118015810 391 391;604;13115 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:118013793-118015810&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.388888888889 0.75 13.407625 0.9518 3.18845833333 10.2191666667 0.588334475779 0.946693619175 2606 122 122;454;2606 20.6641583333 0.4329 6.4072 14.2569583333 0.507337036759 0.824494409412 3505 770 770;2260;3505 0.0 0.0 protein-coding gene protein-coding gene ENSG00000255274 13145 478486 chr10:100882255-100882281+ NoOverlap chr10 100882255 100882281 + 10.3237334887 9 0.94137653332 2.7991222673 7.52461122142 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100882254;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100882255-100882281%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100882255-100882281&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.239491574376 0.230172965593 0.8814195927 102642012 102642038 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102642011;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100882255-100882281%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102642012-102642038&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLGTNLWASPQPMTWWIVRYWSVNWIVR Same 480381 chr10:100882255-100882281+ 11738 11738 1407 0 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.9 -0.238222222222 1.0 -0.672233333333 0.434011111111 -0.042197878294 0.266844913641 67817 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 -5.35518888889 0.5084 -4.93206666667 -0.423122222222 -0.038730396055 0.295715020483 64300 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 13162 588115 chr8:142575875-142575904- NoOverlap chr8 142575875 142575904 - 13.4811099768 10 0.568200198367 -5.88453969955 19.3656496763 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;142575874;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142575875-142575904-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A142575875-142575904&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.275985426767 0.229876198083 0.982786818591 143657236 143657265 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;143657235;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142575875-142575904-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A143657236-143657265&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDPAAASPFPWRPAQNFPFHLYRLVLRDCAGVELVR Same 589060 chr8:142575875-142575904- 12859 12859 303 0 902 142572180 142575904 1386 1386;1889;2097;3879;8408;13162;50093;62741 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:142572180-142575904&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.566666666667 0.833333333333 29.69091 0.8223 -1.28757 30.97848 0.349931399165 1.01667088033 4680 1388 1388;1898;2170;2516;2563;4680;8183;28509 28.04807 0.3878 -8.81316 36.86123 0.448771315485 1.02940372157 3738 2925 2925;3250;3308;3738;3861;3909;7574;37771 0.0 0.132651997001 chr17:28634517-28635609- pseudogene extension MROH4P 6 new exons at 5' end 13175 502129 chr14:75281216-75281245+ NoOverlap chr14 75281216 75281245 + 5.40709992647 10 0.8547035935 -4.73726000637 10.1443599328 ENST00000303562.8,ENST00000535987.5,ENST00000555347.1,ENST00000555686.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;75281215;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75281216-75281245%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A75281216-75281245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0822002767844 0.229773536244 1.04685595635 75747919 75747948 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;75747918;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75281216-75281245%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A75747919-75747948&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QPAPCQTWTYLGPSMQQTGSLCTVAPWGWGPWPQSWSPCALR Same 504031 chr14:75281216-75281245+ 12538 12538 637 0 456 75277155 75281681 653 653;2707;13175;15627;32302;36623;37128;61784;65414 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:75277155-75281681&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.7 0.0 4.11606 1.0 -8.31499 12.43105 0.258367506288 1.03108413579 6703 3768 3768;6703;12830;13388;17137;39238;49903;64236;73058 -15.20505 0.9091 -40.47188 25.26683 -8.63202614789e-05 0.970594302877 35396 9152 9152;14942;21009;33752;35396;56305;59433;66250;68586 0.0 0.323477187295 chr2:28411930-28412448+ ENST00000303562.8 CDS not annotated putative regulatory region 13182 657208 chr17:7910387-7910425- Extension chr17 7910387 7910425 - 7.45676922368 13 0.824994277867 2.35057685238 5.10619237131 chr17:7910387-7910593- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7910386;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7910387-7910425-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7910387-7910425&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.300016301827 0.229694047672 0.772414083382 7813705 7813743 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7813704;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7910387-7910425-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7813705-7813743&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGARATEKEGQEKDR Same 657828 chr17:7910387-7910425- 12557 12557 625 0 320 7909339 7916216 436 436;1938;4281;5688;13182;72031;73071;73673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7909339-7916216&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.615384615385 0.3046875 1.44508461538 0.9972 -5.49852307692 6.94360769231 0.108324511714 0.82785998277 15031 349 349;1564;1761;1828;15031;19061;29084;43318 -3.49399230769 0.6443 -15.6571384615 12.1631461538 0.0960573305708 0.824475113288 11908 2836 2836;3263;3677;4021;11908;12386;65199;71655 0.0 0.0 ENST00000481999.1,ENST00000330494.11,ENST00000470531.5 AntiNC,AntiCDSintron,AntiNCintron protein-coding gene protein-coding gene ENSG00000179859 13227 533637 chr2:61177533-61177625+ NoOverlap chr2 61177533 61177625 + 4.2479032218 31 0.51168816466 0.200316171492 4.04758705031 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;61177532;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A61177533-61177625%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A61177533-61177625&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.135102663015 0.229128084351 0.841840468721 61404668 61404760 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;61404667;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A61177533-61177625%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A61404668-61404760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APRPFLVFRPVHAAMAKWGQGNPHWIVEEREDGTNVNNWRWRGWR Same 535021 chr2:61177533-61177625+ 13872 13872 -645 0 929 61177533 61186081 1432 1432;2951;3231;3681;13227 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:61177533-61186081&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.709677419355 0.706552706553 3.04816451613 0.6904 -3.66936774194 6.71753225806 0.270429760517 0.951852226803 6337 983 983;1603;2853;6337;7813 24.4472419355 0.7966 1.56322903226 22.8840129032 1.04675320293 1.05131752416 374 Best 374 374;473;1570;1744;2201 0.0 0.439048883106 chr14:77458190-77458269+ ENST00000357022.6,ENST00000463681.1 UTR5,NC pseudogene AHSA2 has 4 pseudo exons upstream of the ATG, so switched to pseudogene AHSA2P (ENSG00000173209) 13238 564843 chr5:93602015-93602086+ NoOverlap chr5 93602015 93602086 + 4.54949988921 24 0.83708450955 1.65637077391 2.8931291153 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;93602014;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93602015-93602086%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A93602015-93602086&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.36748835359 0.228994432816 0.647759012438 92937721 92937792 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;92937720;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93602015-93602086%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A92937721-92937792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YTPDGSRLCRLSQLTPRFYSAALCCNYAPC Same 565831 chr5:93602015-93602086+ 12996 12996 242 0 3451 93580856 93603078 4787 4787;9346;11338;11696;13238;18999;26452;26493;26701;27232;28622;33341;37073;38483;40428;50861;66649 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:93580856-93603078&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 1.10485933504 1.2277125 0.9999 -1.2553125 2.483025 0.122852539588 0.558022594229 13700 5022 5022;8932;13700;14826;16126;17841;21763;24145;29213;36125;41771;51124;51917;55188;59615;61664;73562 -10.5466 0.861 -16.557625 6.011025 -0.0130449888454 0.622997843097 42891 5814 5814;6596;9096;16343;18747;24073;27385;33273;39453;40451;41327;42891;44550;46827;53732;65452;67088 0.0 0.0 ENST00000623223.1 NC not annotated potentially spurious 13239 501989 chr14:72553297-72553365+ NoOverlap chr14 72553297 72553365 + 4.77201745044 23 0.997244087958 1.65966092892 3.11235652151 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;72553296;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A72553297-72553365%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A72553297-72553365&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.340810591909 0.228973242021 0.665984664393 73020005 73020073 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;73020004;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A72553297-72553365%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A73020005-73020073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQLPSAAGAESEWPLHFTPEVASFQQWVSDPGVR Same 503891 chr14:72553297-72553365+ 15306 15306 -2067 0 600 72553290 72562586 923 923;2491;2641;13239 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:72553290-72562586&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.608695652174 0.473684210526 0.870656521739 0.9858 -0.558339130435 1.42899565217 0.0613333679558 0.453750786951 21038 639 639;1850;5004;21038 -0.112091304348 0.3459 -1.41584347826 1.30375217391 0.0138036101801 0.463732034408 29220 1893 1893;3067;7481;29220 0.0 0.0 ENST00000554474.5,ENST00000343854.10,ENST00000554300.1,ENST00000555303.1 NC,CDSintron,NCintron,AntiNCintron coding exon(s) RGS6 cassette exon leading to alternative frame final coding exon 13245 524456 chr18:47594846-47594971+ NoOverlap chr18 47594846 47594971 + 1.35710710123 42 0.655198058471 -3.92616904656 5.28327614779 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;47594845;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47594846-47594971%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A47594846-47594971&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.169016542604 0.228925199106 0.99947661423 45121217 45121342 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;45121216;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47594846-47594971%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A45121217-45121342&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPEGTFFRFYAWIYLFNSPFTKTTADDSTNQSLWRKHARMLSYTR Same 525892 chr18:47594846-47594971+ 14886 14886 -1641 0 9000 47594360 47602035 Best 13245 13245;26978;27676;41264;47167;69881;72567 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:47594360-47602035&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.99604743083 0.134869047619 0.9312 -5.36618571429 5.5010547619 0.262085197114 0.898873987284 6593 Best 6593 6593;11265;14639;28210;30783;58565;63900 -5.0293047619 0.7508 -11.9589761905 6.92967142857 0.162740136977 0.769794735867 7430 Best 7430 7430;14557;25346;33451;40777;53603;69649 0.0 0.0 not annotated potentially spurious 13268 572454 chr6:108158940-108158975+ NoOverlap chr6 108158940 108158975 + 5.59316660464 12 0.993392843519 -2.87552504738 8.46869165202 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108158939;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108158940-108158975%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108158940-108158975&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.016350398122 0.228674089172 1.02653948417 108480144 108480179 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108480143;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108158940-108158975%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108480144-108480179&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVFSKISVVKSYNLEK Same 573481 chr6:108158940-108158975+ 15573 15573 -2305 0 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.0 1.500925 0.9996 -5.151875 6.6528 0.0856090539835 0.79762476122 17538 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 -5.33268333333 0.4903 -12.4929416667 7.16025833333 -0.00792927328681 0.617962814113 39701 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000441184.1,ENST00000440575.6,ENST00000492070.1 NC,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 13272 489533 chr11:114163983-114164042- NoOverlap chr11 114163983 114164042 - 4.33106995225 20 0.907392996109 -0.919529938698 5.25059989095 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;114163982;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114163983-114164042-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A114163983-114164042&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.202805715806 0.228619191024 0.884793244453 114034705 114034764 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;114034704;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114163983-114164042-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A114034705-114034764&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLCLAYKNKIQR*TEYKISPLQYRETAT Same 491518 chr11:114163983-114164042- 13542 13542 -270 8 608 114160174 114164042 933 933;13272;22012;22975;35216;64783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:114160174-114164042&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.383333333333 0.454545454545 1.63596 0.9792 -1.766055 3.402015 0.118007887205 0.609869478011 14121 5084 5084;14121;38000;47790;65893;71735 -6.27649 0.9205 -9.61164 3.33515 -0.0117782211282 0.516162789411 42025 4785 4785;23552;42025;54566;64496;66305 0.0 0.0 ENST00000335953.8,ENST00000539918.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 13302 466181 chr1:90535213-90535269+ NoOverlap chr1 90535213 90535269 + 4.10632099603 19 0.96729670365 -2.23881068198 6.34513167802 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90535212;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90535213-90535269%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90535213-90535269&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0966027983272 0.228279066383 0.967282735193 91000770 91000826 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91000769;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90535213-90535269%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91000770-91000826&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCPQGSSPHPLPVAREPQLMLRSACHLLMAEGAK Same 468041 chr1:90535213-90535269+ 15688 15688 -2386 0 1360 90535213 90537888 2040 2040;13302 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90535213-90537888&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.561403508772 0.452380952381 -1.30557368421 0.9906 -5.04055263158 3.73497894737 0.0154292219948 0.620999594386 34464 17599 17599;34464 -9.18684210526 0.9314 -20.2308 11.0439578947 0.0233444984998 0.79619780654 25878 Best 25878 25878;52199 0.0 0.0 not annotated putative regulatory region 13306 476456 chr1:244051185-244051352- NoOverlap chr1 244051185 244051352 - 3.24941251853 56 0.788432843955 1.64186789521 1.60754462332 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244051184;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244051185-244051352-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244051185-244051352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.409064904687 0.228261521936 0.646289138512 244214487 244214654 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244214486;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244051185-244051352-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244214487-244214654&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DRCKVEMMLERNEIPSPPQIRTH*LPVCVLE*KAEGWQAVSCSDIMFRWKCYLQLCSF Same 478350 chr1:244051185-244051352- 13616 13616 -310 32 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.488095238095 0.1004784689 -0.565367857143 0.9994 0.310382142857 -0.87575 0.0332628787757 0.333752021367 27546 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -1.12157678571 0.9214 -0.554578571429 -0.566998214286 0.115253638212 0.479804552705 10209 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0 ENST00000358704.4,ENST00000622512.1 AntiUTR5,AntiUTR5intron not annotated putative regulatory region 13330 579656 chr7:142313632-142313661+ NoOverlap chr7 142313632 142313661 + 9.62719004154 10 0.684802014191 0.249769771099 9.37742027044 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142313631;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142313632-142313661%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142313632-142313661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.206576290623 0.227941278436 1.00565435026 142013455 142013484 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142013454;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142313632-142313661%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142013455-142013484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FSPECPNSSLLNLHLHALQPEDSALYLCASSQDTALQSHR None NA NA 0 235 142308759 142313661 301 301;580;755;2301;6419;13330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142308759-142313661&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.357142857143 17.10002 0.9307 3.47132 13.6287 0.607935845254 0.984861023819 2499 920 920;2287;2398;2499;3331;6365 25.27561 0.48 6.79073 18.48488 0.609094632729 0.901163399597 3138 1287 1287;2253;2669;3117;3138;4592 0.0 0.0 ENST00000390357.3 NC immunoglobulin segment overlaps an immunoglobulin region 13373 548162 chr22:23034170-23034211+ NoOverlap chr22 23034170 23034211 + 7.65753582546 14 0.646799420157 2.30760700628 5.34992881918 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;23034169;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A23034170-23034211%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A23034170-23034211&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.247504051225 0.227126243321 0.807959907871 23376346 23376387 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;23376345;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A23034170-23034211%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A23376346-23376387&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AYSPSSCMENSNGPLLICSLQHCLHFILMLLLVSLSMLGISLLTDPTPDNQVIATR Same 549530 chr22:23034170-23034211+ 13961 13961 -588 0 1041 23034170 23037838 1589 1589;13373 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:23034170-23037838&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.47619047619 0.0 8.24305714286 0.7661 8.07572142857 0.167335714286 0.0804229113205 0.2536366174 18221 2217 2217;18221 15.4597857143 0.3189 10.6568428571 4.80294285714 0.201331900132 0.5138212447 6209 3325 3325;6209 0.0 0.203973079771 chr22:32102022-32102237+ not annotated putative regulatory region 13400 554885 chr3:13047486-13047521- NoOverlap chr3 13047486 13047521 - 8.29455834627 12 0.69413036291 1.79650850842 6.49804983785 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;13047485;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A13047486-13047521-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A13047486-13047521&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.238185326013 0.226724194443 0.883278018868 13088986 13089021 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;13088985;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A13047486-13047521-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A13088986-13089021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSLDTGSSLSTDR Same 555837 chr3:13047486-13047521- 14007 14007 -607 0 650 13042289 13047521 998 998;13400;35128 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:13042289-13047521&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.638888888889 0.3 9.50749166667 0.9433 -0.465708333333 9.9732 0.42948726612 0.964193476253 3707 1537 1537;3707;37259 14.4045583333 0.4424 0.105416666667 14.2991416667 0.416575211126 0.855075552826 3871 381 381;3871;27615 0.0 0.0 ENST00000613206.1 CDSintron coding exon(s) IQSEC1 alternative first exon 13422 573105 chr6:148513599-148513625+ NoOverlap chr6 148513599 148513625 + 7.47433345848 9 0.887786848419 -2.3520777954 9.82641125388 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;148513598;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A148513599-148513625%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A148513599-148513625&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.068392162259 0.226439737912 1.03520519604 148834735 148834761 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;148834734;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A148513599-148513625%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A148834735-148834761&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TAGPEHADSLQSAMGCWGIWTVLYG Same 574132 chr6:148513599-148513625+ 12463 12463 959 0 502 148513599 148520385 746 746;13422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:148513599-148520385&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.0 5.94885555556 0.9532 -2.52237777778 8.47123333333 0.158170159492 0.876617937248 11023 1106 1106;11023 0.817422222222 0.5368 -11.3390333333 12.1564555556 0.0868643250933 0.794863323619 12932 1588 1588;12932 0.0 0.0 ENST00000367467.7 CDSintron coding exon(s) SASH1 splice donor site shift 13435 570016 chr5:176146963-176147109- NoOverlap chr5 176146963 176147109 - 3.58811635995 49 0.277814160684 -1.48547141345 5.07358777341 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;176146962;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176146963-176147109-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A176146963-176147109&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0545901312616 0.226211502464 1.00296388993 175573966 175574112 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;175573965;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176146963-176147109-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A175573966-175574112&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILEIQDSGEDFVVRVDVEVDSPNPTPVLRSIDLQERAERATTPAPRDLQVPSVLPSAFIVLHSD Same 571034 chr5:176146963-176147109- 12887 12887 548 0 6143 176146963 176156969 8635 8635;13435;25692;32992;35007;45549;51680 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:176146963-176156969&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.462585034014 0.254545454545 12.1259122449 0.7109 -0.798916326531 12.9248285714 1.10134978095 1.01606444577 17 Best 17 17;170;306;1893;3127;16509;16641 20.4836836735 0.6171 -0.276636734694 20.7603204082 1.07757708192 1.04509119683 134 11 11;134;388;800;3031;3612;16194 0.926015868006 chr18:13068852-13068991+ 0.870252827372 chr18:13068852-13068991+ ENST00000513919.1,ENST00000510029.1 NC,AntiNCintron pseudogene centrosomal protein 192kDa (CEP192) pseudogene (ENSG00000283559) 13445 515950 chr17:2401131-2401172+ NoOverlap chr17 2401131 2401172 + 7.5062856589 14 0.847318226902 4.32910718875 3.17717847015 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2401130;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401131-2401172%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2401131-2401172&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.366454313577 0.226070698583 0.549904102729 2304425 2304466 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2304424;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401131-2401172%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2304425-2304466&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPRPPPPLLHRGHSQSPDRSPRPQGR Same 517326 chr17:2401131-2401172+ 12889 12889 556 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.809523809524 0.769230769231 0.0623 0.8826 -3.52108571429 3.58338571429 -0.00852367184753 0.570110347901 46224 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -9.47874285714 0.6032 -14.33175 4.85300714286 -0.034747632227 0.519231083521 61269 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 not annotated putative regulatory region 13459 482374 chr10:117551425-117551457- NoOverlap chr10 117551425 117551457 - 8.36193641749 11 0.918052116496 2.21202728965 6.14990912784 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117551424;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551425-117551457-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117551425-117551457&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.26465322354 0.225870391402 0.838580664114 119310936 119310968 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119310935;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551425-117551457-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119310936-119310968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TELLSNPSLGREGGRWSGLR Same 484301 chr10:117551425-117551457- 12659 12659 800 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.727272727273 1.2375 -3.22436363636 0.9878 -7.79401818182 4.56965454545 -0.0452562624035 0.623210545703 69341 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -10.5171272727 0.8928 -16.6468909091 6.12976363636 -0.0518134015566 0.538628701081 71988 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 not annotated putative regulatory region 13504 539829 chr2:110025240-110025269- NoOverlap chr2 110025240 110025269 - 6.01635005474 10 0.611197070268 -8.16550993919 14.1818599939 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110025239;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025240-110025269-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110025240-110025269&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0376890149463 0.225274206637 0.977552423457 110782817 110782846 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110782816;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025240-110025269-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110782817-110782846&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSGAPQATLLSLMLLPPGLSSFEDHPCPPGHWCLGDQGAFFCPPGTFR Same 541189 chr2:110025240-110025269- 11111 11111 2393 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.633333333333 0.333333333333 8.4487 0.8129 -5.85283 14.30153 0.250473757155 1.03587631437 6966 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 22.01979 0.667 -4.58001 26.5998 0.87128941284 1.04100409755 2230 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 13549 518098 chr17:48615200-48615283+ NoOverlap chr17 48615200 48615283 + 3.0631428478 28 0.743093657697 -1.76179647233 4.82493932013 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48615199;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48615200-48615283%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48615200-48615283&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.102225037017 0.224598241905 0.904621954198 46692562 46692645 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46692561;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48615200-48615283%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46692562-46692645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPPGQNAERG*ERERASERES*SERAPGSEER Same 519499 chr17:48615200-48615283+ 14075 14075 -526 17 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.642857142857 1.14871794872 -2.74335714286 0.865 -7.21172857143 4.46837142857 -4.81304319577e-05 0.725862323271 41528 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -17.7042821429 0.6931 -18.3794892857 0.675207142857 -0.0533456558543 0.371848311017 72445 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000567101.2 AntiNCintron not annotated putative regulatory region 13564 483266 chr11:1108009-1108053+ NoOverlap chr11 1108009 1108053 + 7.84500672023 15 0.47724727245 1.64332002004 6.20168670019 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1108008;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1108009-1108053%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1108009-1108053&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.144886706235 0.224445589825 0.897234274544 1101917 1101961 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1101916;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1108009-1108053%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1101917-1101961&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFSQESKGVCVHGNAEYQVSPGLGER Same 485196 chr11:1108009-1108053+ 14320 14320 -756 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.577777777778 0.3125 19.0861733333 0.8416 3.96214666667 15.1240266667 0.650230877548 1.01592745517 2300 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 20.1718466667 0.7215 -2.68589333333 22.85774 0.912850868483 1.03218415573 2040 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.04343464351 chr11:1199087-1199185+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 13570 475827 chr1:214002658-214002768- NoOverlap chr1 214002658 214002768 - 3.35712708573 37 0.994393752874 1.00000538375 2.35712170198 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;214002657;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214002658-214002768-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A214002658-214002768&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.328914628139 0.224407304512 0.673924290463 214176001 214176111 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214176000;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214002658-214002768-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214176001-214176111&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SELTNWLISLLSACAEKQLFFQESTSCFQDTYTRTMTHDGIDSVNIQLY*TR Same 477717 chr1:214002658-214002768- 14567 14567 -997 2 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.405405405405 0.444 -0.26672972973 0.9983 -1.70277297297 1.43604324324 0.0777292338791 0.522604917667 18582 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -5.18699189189 0.7711 -6.59964054054 1.41264864865 0.0225258014406 0.519305675446 26154 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000261454.8 AntiCDSintron not annotated potentially spurious 13580 480334 chr10:26577734-26577838- NoOverlap chr10 26577734 26577838 - 3.36131434441 35 0.3792433705 -2.30160859483 5.66292293923 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;26577733;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26577734-26577838-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A26577734-26577838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0213730247551 0.224315891874 1.00302572921 26866663 26866767 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;26866662;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26577734-26577838-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A26866663-26866767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLSNYNVYLSAHIFYQVHLLQQVLQHPFQKHSTAKEAGYASPTPSWAKDLRLSCLIWEK Same 482243 chr10:26577734-26577838- 13380 13380 200 0 9200 26577734 26577838 Best 13580 13580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:26577734-26577838&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.514285714286 0.308823529412 5.93953714286 0.729 -5.50992 11.4494571429 0.726476852525 1.08062875062 1981 Best 1981 1981 14.9133771429 0.3838 -5.06126 19.9746371429 0.991155253133 1.05494770114 1260 Best 1260 1260 0.0 0.0 ENST00000455612.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 13605 515948 chr17:2401001-2401036+ NoOverlap chr17 2401001 2401036 + 9.08171658218 12 0.874236413113 6.85953330994 2.22218327224 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2401000;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401001-2401036%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2401001-2401036&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.369779261613 0.223884954943 0.375167776229 2304295 2304330 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2304294;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401001-2401036%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2304295-2304330&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLPPRGPRESRR Same 517324 chr17:2401001-2401036+ 13327 13327 278 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.861111111111 0.981818181818 -5.50939166667 0.9302 -5.93226666667 0.422875 -0.0143319428051 0.313392854044 50127 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -8.35238333333 0.4786 -11.534425 3.18204166667 -0.0356596828902 0.445306840261 61975 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 ENST00000174618.4 AntiUTR5 not annotated putative regulatory region 13618 531716 chr19:48469475-48469516- NoOverlap chr19 48469475 48469516 - 4.88425723144 14 0.953005482349 -2.91223581348 7.79649304492 ENST00000427476.4,ENST00000452733.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48469474;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469475-48469516-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48469475-48469516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0317490164264 0.223745295849 1.01445369698 48972732 48972773 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48972731;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469475-48469516-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48972732-48972773&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLQQLPADPAPPRPTIDAVLHGG*EGPRGIRGGPASR Same 533191 chr19:48469475-48469516- 14998 14998 -1380 6 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.738095238095 0.717948717949 -0.189121428571 0.8755 -6.56717857143 6.37805714286 0.024997514529 0.794607759675 30624 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -6.51189285714 0.4695 -14.8276214286 8.31572857143 0.00782628719144 0.674903812925 31672 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.122947434272 chr1:161042833-161042882- ENST00000593476.1,ENST00000427476.4,ENST00000391881.7,ENST00000595676.1 NC,AntiCDS,AntiNC,AntiUTR5intron coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 13626 539281 chr2:74421730-74421765- NoOverlap chr2 74421730 74421765 - 6.64103317261 12 0.885592940159 -0.704200049241 7.34523322185 ENST00000409791.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;74421729;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A74421730-74421765-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A74421730-74421765&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.176171790332 0.223575555939 0.967167685627 74648857 74648892 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;74648856;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A74421730-74421765-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A74648857-74648892&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLQPQIGSPDSWFVGSLQIRRHHRDDARTHGPWAG Same 540659 chr2:74421730-74421765- 12963 12963 663 0 326 74421730 74426760 445 445;13626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:74421730-74426760&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.638888888889 1.8 -3.43500833333 0.9679 -11.5210833333 8.086075 -0.00903142963699 0.877191731816 46513 309 309;46513 -11.546 0.5134 -21.0181583333 9.47215833333 -0.0215769218708 0.662840291313 49401 297 297;49401 0.0 0.0 ENST00000409791.5,ENST00000348227.4,ENST00000461531.5 AntiCDS,AntiUTR5,AntiNC coding exon(s) RTKN 3' extension 13668 592600 chr9:99374155-99374214- NoOverlap chr9 99374155 99374214 - 4.33132992983 20 0.87048065919 -0.784760087729 5.11609001756 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;99374154;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A99374155-99374214-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A99374155-99374214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.206779919799 0.222708575345 0.872003249891 102136437 102136496 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;102136436;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A99374155-99374214-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A102136437-102136496&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DISTATHSSFSQINQEVGISDKCHLLIFQRDKFWWCDQQVPR Same 593552 chr9:99374155-99374214- 13513 13513 155 0 9256 99374155 99374214 Best 13668 13668 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:99374155-99374214&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.0 -0.721925 0.9884 -2.809765 2.08784 0.00552814702903 0.486482283709 38797 Best 38797 38797 -7.024385 0.5166 -9.29317 2.268785 -0.0264281063815 0.46898701851 53856 Best 53856 53856 0.0 0.0 ENST00000604258.5 NC not annotated potentially spurious 13684 593108 chr9:122905089-122905184- NoOverlap chr9 122905089 122905184 - 4.50917186588 32 0.911497196155 4.28286246024 0.22630940564 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;122905088;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905089-122905184-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A122905089-122905184&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.553932573482 0.222548283381 0.351991229019 125667368 125667463 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;125667367;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905089-122905184-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A125667368-125667463&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RLRRQAAPSRGSRERPLATPPGPPQVGRGRAR Same 594061 chr9:122905089-122905184- 13830 13830 -146 0 637 122905081 122905417 981 981;3503;11688;13684;41126;71692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:122905081-122905417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.822916666667 0.985879332478 -2.43883125 0.8916 -3.631265625 1.192434375 -0.0520495387501 0.457745872117 71470 17978 17978;19658;42486;47356;64280;71470 -2.40571875 0.3742 -3.192853125 0.787134375 0.00401224607837 0.482682820824 33390 17127 17127;21574;24738;33390;36324;59653 0.0 0.0 ENST00000335387.9,ENST00000478216.1 UTR5,NC not annotated putative regulatory region 13695 513473 chr16:20721910-20722053- NoOverlap chr16 20721910 20722053 - 3.46837922558 48 0.292952239261 -1.5325103756 5.00088960119 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20721909;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721910-20722053-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20721910-20722053&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0476935124595 0.222448001654 0.996225467189 20733232 20733375 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20733231;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20721910-20722053-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20733232-20733375&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IQTLKPSLSFKLDYFSTIFIPVALFVT*SIIEFSI*HINSDRNINHFFKYLVIFLINNSTHSGYCQQPLSALH Same 515120 chr16:20721910-20722053- 13191 13191 504 28 1174 20720997 20722053 1782 1782;2457;4589;12301;12422;13695;22010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20720997-20722053&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.277777777778 0.451410658307 -1.80974583333 0.0128 -2.02224166667 0.212495833333 0.0113987886156 0.409891272599 36194 26036 26036;26102;32372;32727;36194;41718;53953 30.4038395833 0.684 -7.01175 37.4155895833 0.973552452546 0.939323430717 1530 937 937;1188;1352;1485;1530;1845;1949 0.0 0.883243422859 chrM:12337-14148+ ENST00000561584.5,ENST00000501740.6 AntiUTR5intron,AntiNCintron pseudogene mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene (ENSG00000283399) 13718 482305 chr10:116836225-116836260- NoOverlap chr10 116836225 116836260 - 7.46262489756 12 0.996941837695 1.1194331646 6.34319173296 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;116836224;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A116836225-116836260-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A116836225-116836260&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.227221016808 0.222110951279 0.882743580912 118595736 118595771 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;118595735;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A116836225-116836260-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A118595736-118595771&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLQKMCQSQAGSK Same 484230 chr10:116836225-116836260- 14940 14940 -1222 0 599 116834939 116836390 922 922;13718;25613;56479 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:116834939-116836390&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.0 4.37244166667 0.9919 -2.11135833333 6.4838 0.188900271272 0.782610324753 9282 437 437;6718;9282;51004 -2.56830833333 0.7039 -14.7430333333 12.174725 0.0966417128973 0.819035842125 11846 3518 3518;11846;63529;65009 0.0 0.0 ENST00000434227.1 NCintron coding exon(s) HSPA12A alternative first exon 13729 505784 chr14:105600261-105600329- NoOverlap chr14 105600261 105600329 - 4.06605655732 23 0.465400167849 -2.84929140192 6.91534795924 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105600260;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600261-105600329-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105600261-105600329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0365794537804 0.222043876458 1.02058153115 106066598 106066666 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106066597;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600261-105600329-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106066598-106066666&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLACLIQNFMPEDISVQWLHNEVQLPDAR None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.594202898551 0.495215311005 14.8746478261 0.96 -0.487626086957 15.362273913 0.969819218083 1.03088097662 967 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 13.4493826087 0.4657 -8.5766 22.0259826087 0.84817964651 1.06138278252 2322 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0 ENST00000390541.2 NC immunoglobulin segment overlaps an immunoglobulin region 13743 472687 chr1:62999217-62999297- NoOverlap chr1 62999217 62999297 - 3.70135187882 27 0.939604791333 0.0343851469181 3.6669667319 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;62999216;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62999217-62999297-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A62999217-62999297&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.264656071993 0.221850035877 0.772742423981 63464888 63464968 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;63464887;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62999217-62999297-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A63464888-63464968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WAGASEHDEYRSLHIRMSNYLNMYKNYLQAM Same 474566 chr1:62999217-62999297- 14437 14437 -694 0 668 62997933 63000329 1026 1026;13743;18049;27623;33268;34189;37177;59194;68808 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:62997933-63000329&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.382716049383 0.346153846154 1.05159259259 1.0 -0.939244444444 1.99083703704 0.119978305674 0.533055605695 13946 6220 6220;8200;13946;16945;28973;32781;63612;68420;69109 0.0807703703704 0.9362 -1.74671481481 1.82748518519 0.0862554279604 0.508513364551 12991 6223 6223;11538;12991;22844;28460;29330;40736;45828;71146 0.0 0.0 not annotated putative regulatory region 13758 579701 chr7:142715746-142715778+ NoOverlap chr7 142715746 142715778 + 6.68108194525 11 0.668894483864 -4.0210454464 10.7021273916 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142715745;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142715746-142715778%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142715746-142715778&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0572926900132 0.221550773102 1.04573023364 142423573 142423605 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142423572;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142715746-142715778%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142423573-142423605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDVPEGYKVSR None NA NA 0 499 142715668 142721155 741 741;2270;13758;67177 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142715668-142721155&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.484848484848 0.55 15.8460090909 0.9945 -3.82691818182 19.6729272727 0.792563764281 0.985112277286 1696 1200 1200;1687;1696;2238 16.0882545455 0.5306 -17.3123363636 33.4005909091 0.678630417462 1.02245280511 2888 2138 2138;2262;2888;3019 0.0 0.0 ENST00000390399.3,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 13781 589081 chr9:66183809-66183964+ NoOverlap chr9 66183809 66183964 + 2.75765572689 52 0.317799649042 -2.33594416426 5.09359989115 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;66183808;156;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66183809-66183964%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A66183809-66183964&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.028382610353 0.221175338678 1.00923342439 42337449 42337294 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;42337448;-154;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66183809-66183964%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A42337449-42337294&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FYVTYNFAATNDTVIWDRPSRVGTYHADCNCFRSIDFGWSGFISHQMLKRRSFLKNDDLIMFVDFEGTFLGLPE Same 590027 chr9:66183809-66183964+ 12584 12584 1197 0 3697 66182325 66188394 5129 5129;10383;13781;19517;25319;25601 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:66182325-66188394&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.122738001574 10.0772403846 0.8609 -9.61682692308 19.6940673077 1.08990450555 0.897948846421 27 Best 27 27;119;165;833;1155;1409 31.5529673077 0.8436 -14.2853942308 45.8383615385 1.0185537369 0.92292270884 804 170 170;536;804;927;1082;1686 0.99864857292 chr6:46834578-46834751+ 1.00352812374 chr6:46834578-46834751+ pseudogene MEP1A pseudogene (ENSG00000284706); found after looking at high-scoring intergenic PCCRs 13799 591614 chr9:27250074-27250106- NoOverlap chr9 27250074 27250106 - 5.17859087749 11 0.592614633402 -7.95323614912 13.1318270266 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;27250073;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A27250074-27250106-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A27250074-27250106&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0519599833608 0.221000234862 0.993901671263 27250072 27250104 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;27250071;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A27250074-27250106-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A27250072-27250104&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DVQAILLNLFSADTVLMCH Same 592570 chr9:27250074-27250106- 11536 11536 2263 0 8600 27245683 27261935 12553 12553;13799;24810 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:27245683-27261935&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.393939393939 0.0 -4.81609090909 0.6391 -14.9342181818 10.1181272727 0.000226907382942 0.96380989842 41406 7096 7096;10355;41406 19.5697909091 0.6698 -8.05820909091 27.628 0.862267106896 1.05154211451 2264 509 509;2264;2644 0.0 0.502139635378 chr19:1816431-1816569- ENST00000425633.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 13807 469001 chr1:216518327-216518365+ NoOverlap chr1 216518327 216518365 + 5.07776927604 13 0.906004425116 -3.05464618023 8.13241545627 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;216518326;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A216518327-216518365%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A216518327-216518365&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0282043549886 0.220910927908 1.02183971293 216691669 216691707 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;216691668;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A216518327-216518365%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A216691669-216691707&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ENYWPATKIKFKDR Same 470880 chr1:216518327-216518365+ 13834 13834 -27 0 1433 216503390 216521946 2138 2138;6507;13807;38000;72611 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:216503390-216521946&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.410256410256 0.609375 2.05131538462 1.0 -0.459215384615 2.51053076923 0.0442115844706 0.466016591532 24475 4547 4547;8285;24475;37603;53108 -0.8631 0.993 -5.53397692308 4.67087692308 0.0278902646551 0.533665023656 24382 9393 9393;17814;24382;28116;57830 0.0 0.0 ENST00000359162.6 AntiCDSintron not annotated putative regulatory region 13843 588652 chr9:23826333-23826377+ NoOverlap chr9 23826333 23826377 + 5.47985331217 15 0.964237939015 -0.933426705996 6.41328001817 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23826332;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23826333-23826377%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23826333-23826377&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.16705640608 0.220245298864 0.936627578445 23826331 23826375 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23826330;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23826333-23826377%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23826331-23826375&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TAVCAAALPGSYPGQHARKYTPNR Same 589598 chr9:23826333-23826377+ 15349 15349 -1506 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.40625 0.374486666667 0.9989 -3.05942 3.43390666667 0.0311844228738 0.566530766161 28238 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 1.50988 0.6217 -4.56484666667 6.07472666667 0.107543212514 0.609442152065 10817 Best 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000380117.5 AntiUTR5 not annotated putative regulatory region 13891 491027 chr12:31015442-31015582+ NoOverlap chr12 31015442 31015582 + 5.35544676191 47 0.292980362937 2.91448085295 2.44096590896 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;31015441;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A31015442-31015582%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A31015442-31015582&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.170662548641 0.219603211259 0.738595502917 31168376 31168516 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;31168375;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A31015442-31015582%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A31168376-31168516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVWGQLQGSGVGNRFVPRIIGAPDTASPRTNNRSF*LLRPPF*LLLASPIEAGVGTAEQHILPQQEIR Same 493004 chr12:31015442-31015582+ 15260 15260 -1369 20 5080 31015442 31015824 7035 7035;12731;13891 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:31015442-31015824&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.531914893617 0.528485757121 -1.80181702128 0.0414 -0.984261702128 -0.817555319149 0.00625464751038 0.315717540707 38445 27586 27586;33217;38445 43.7805680851 0.6829 28.1325723404 15.6479957447 0.982496407295 0.969141515839 1386 Best 1386 1386;1428;1639 0.0 0.834361925368 chrM:5904-7445+ ENST00000537555.1 NC pseudogene mitochondrially encoded cytochrome c oxidase I (MT-CO1) processed pseudogene (ENSG00000256984) 13950 485922 chr11:111450415-111450444+ NoOverlap chr11 111450415 111450444 + 9.50893992782 10 0.803350881209 2.80989995003 6.69903997779 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111450414;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111450415-111450444%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111450415-111450444&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.249833778408 0.218870670546 0.850338346973 111321140 111321169 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111321139;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111450415-111450444%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111321140-111321169&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVPLYVVKMDGK Same 487880 chr11:111450415-111450444+ 13510 13510 440 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 10.55187 0.9703 0.46113 10.09074 0.445495169751 0.944627497684 3545 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 8.88632 0.3465 1.69877 7.18755 0.0847605483802 0.594525963937 13173 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000531009.1,ENST00000525890.1 NC,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 13970 482383 chr10:117554621-117554689- NoOverlap chr10 117554621 117554689 - 3.55274344268 23 0.800396734569 -1.6973042825 5.25004772518 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117554620;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117554621-117554689-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117554621-117554689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.128975776374 0.218544196022 0.909971096954 119314132 119314200 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119314131;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117554621-117554689-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119314132-119314200&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WCIFIAVPYVKAMGIV*SLFSHFKDQFQKQER Same 484310 chr10:117554621-117554689- 13958 13958 12 9 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.434782608696 0.0 0.064547826087 0.9929 -5.69422608696 5.75877391304 0.161787645353 0.823669590617 10795 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -2.9751 0.8233 -9.80907391304 6.83397391304 0.0973537382773 0.693605380901 11754 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 not annotated putative regulatory region 13988 516234 chr17:7430507-7430533+ NoOverlap chr17 7430507 7430533 + 12.0432887607 9 0.622903791867 2.84393355581 9.1993552049 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7430506;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7430507-7430533%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7430507-7430533&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.22092046023 0.218270847753 0.932025516612 7333826 7333852 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7333825;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7430507-7430533%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7333826-7333852&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSVPVPTSAPAPPGTLAPATTPVLAPTPAPVPASAPSPAPALVMALTTTPVPDPVPATTPAPIITPIPSTPPAFSHDLSTGHVVYDAR Same 517608 chr17:7430507-7430533+ 15154 15154 -1166 0 708 7420340 7438334 1096 1096;1905;1920;2283;5350;13988;14787;48569;72692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7420340-7438334&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.421875 6.4765 0.9848 -6.80484444444 13.2813444444 0.314112037487 1.03159081305 5308 1008 1008;1355;2074;2394;2819;5308;13112;27391;64992 2.00096666667 0.5529 -13.6380222222 15.6389888889 0.167403203132 0.90823693767 7245 3602 3602;3907;7062;7245;8899;17053;24490;30052;59755 0.0 0.18755105986 chr16:30723584-30725157+ ENST00000575310.1 NCintron protein-coding gene protein-coding gene ENSG00000283439 14000 474042 chr1:149721425-149721538- NoOverlap chr1 149721425 149721538 - 3.83607366211 38 0.381202491236 -0.614972967554 4.45104662966 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;149721424;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A149721425-149721538-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A149721425-149721538&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0567220950225 0.218107732324 0.920284707099 149692960 149307549 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;149692959;-385410;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A149721425-149721538-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A149692960-149307549&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DDQASLPPTSPMSWWFAVGADLLEKNLAEIQNLRQRLEESISLNDRLRERLEHVLSNGDQGK Different 475923 chr1:149721425-149721544- 8190 8190 5810 0 7026 149721425 149729612 9995 9995;14000;42359 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:149721425-149729612&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.552631578947 0.351851851852 3.79072368421 0.5773 -4.08195 7.87267368421 0.354637810892 1.03861376893 4607 3737 3737;4607;21298 15.8789868421 0.5461 -0.214497368421 16.0934842105 1.01143952537 1.01054827508 919 Best 919 919;1895;17008 0.0959202502914 chr1:149017748-149017879+ 0.579269771182 chr1:149017748-149017879+ ENST00000609662.1,ENST00000617878.1 NC,NCintron pseudogene extension pseudogene of PDE4DIP extended (ENSG00000234232) 14044 579715 chr7:142797121-142797165+ NoOverlap chr7 142797121 142797165 + 6.53485329549 15 0.567977416648 -0.557933266958 7.09278656244 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142797120;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142797121-142797165%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142797121-142797165&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132223617958 0.217391860054 0.97505935015 142494805 142494849 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142494804;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142797121-142797165%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142494805-142494849&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQETQYFGPGTRLLVLGER None NA NA 0 213 142791723 142802211 263 263;293;294;589;704;804;3633;3972;3973;4210;5160;7171;14044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142791723-142802211&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.602678571429 20.2939333333 0.7969 6.95644666667 13.3374866667 0.587922386749 0.990746887969 2607 202 202;239;244;463;570;1049;1862;1949;2055;2126;2607;3459;3811 16.4317066667 0.3837 7.37841333333 9.05329333333 0.37850824339 0.689409366189 4072 52 52;75;144;203;567;1432;2847;3039;3439;3615;4072;4122;6306 0.0 0.261444013441 chr17:75588058-75590243+ ENST00000390417.1,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 14080 595157 chrX:49878962-49879033+ NoOverlap chrX 49878962 49879033 + 4.81253736963 24 0.725698736044 1.86669587096 2.94584149867 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;49878961;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A49878962-49879033%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A49878962-49879033&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.32730836415 0.216954162878 0.653221984784 49643565 49643636 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;49643564;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A49878962-49879033%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A49643565-49643636&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEETMKGVRAAIGAESWKRLKETAR Same 595799 chrX:49878962-49879033+ 14336 14336 -256 0 490 49878962 49880307 724 724;6474;8567;14080;37462 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:49878962-49880307&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 1.07196029777 3.060875 0.9148 1.46686666667 1.59400833333 0.127008377981 0.480004260443 13348 671 671;7761;13348;22106;48276 -2.03842916667 0.3529 -3.63661666667 1.5981875 4.58644343503e-05 0.47945082775 35334 433 433;14478;35334;44633;49684 0.0 0.239627512686 chr17:50508657-50508750+ ENST00000437322.2 AntiNCintron pseudo-exon USP27X pseudogenic sequence upstream of ATG 14121 494066 chr12:2770415-2770456- NoOverlap chr12 2770415 2770456 - 8.15587854385 14 0.391302357519 -2.52710000106 10.6829785449 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2770414;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2770415-2770456-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2770415-2770456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0722650360485 0.216388015136 1.04507143631 2879581 2879622 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2879580;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2770415-2770456-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2879581-2879622&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VACQVSLPVLINLLCQPSHISAFVVLSK Same 496060 chr12:2770415-2770456- 13855 13855 266 0 1350 2767965 2775661 2025 2025;14121;16598 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2767965-2775661&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52380952381 0.4 4.97078571429 0.4814 -2.58353571429 7.55432142857 0.059046874576 0.875188889729 21423 9143 9143;18587;21423 6.64535 0.2116 -2.41941428571 9.06476428571 0.0899157777802 0.715128491612 12570 4488 4488;12570;18208 0.0 0.0 ENST00000536497.1,ENST00000540093.1 NC,NCintron pseudogene unitary pseudogene ENSG00000255669 14122 479926 chr10:8050943-8050981- NoOverlap chr10 8050943 8050981 - 8.4602001722 13 0.639250899402 3.71021547914 4.74998469307 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8050942;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8050943-8050981-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8050943-8050981&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.25820336065 0.216377728559 0.716401035736 8092906 8092944 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8092905;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8050943-8050981-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8092906-8092944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATHQSQATGASRRAPRGRGAGR Same 481834 chr10:8050943-8050981- 14758 14758 -636 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.794871794872 0.975 1.15497692308 0.8581 1.53448461538 -0.379507692308 -0.0235398756806 0.229945591474 56524 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -1.81626923077 0.375 -0.784292307692 -1.03197692308 -0.0281824833519 0.303891334687 55485 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.120033728494 chr3:154428635-154429615- ENST00000355358.1,ENST00000420815.5 NC,NCintron not annotated putative regulatory region 14171 491316 chr12:49033428-49033496+ NoOverlap chr12 49033428 49033496 + 3.10310443977 23 0.787957977981 -2.84109558943 5.94420002919 ENST00000301067.11 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;49033427;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49033428-49033496%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A49033428-49033496&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0339663604615 0.215749991441 0.966733543104 49427211 49427279 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49427210;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49033428-49033496%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49427211-49427279&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLLLLLLDCHLS*KVLLLLLLLLLLLQFLGQLHTLLLQLQLPFL Same 493293 chr12:49033428-49033496+ 14358 14358 -187 11 27 49020566 49033910 27 27;1869;2293;3141;4665;5179;14171;29832;59889;70464 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:49020566-49033910&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.594202898551 0.0 4.44087826087 0.8741 -7.86509130435 12.3059695652 0.552386667107 1.07518184118 2802 391 391;2014;2802;4299;4455;6825;32787;42176;48473;48787 -11.8680043478 0.8212 -24.0542173913 12.1862130435 0.0475666437388 0.833658216848 19234 2210 2210;2935;3946;7899;19234;24986;25843;31483;36637;57651 0.0 0.0387957392486 chr20:25195730-25195867+ ENST00000301067.11 AntiCDS not annotated potentially spurious 14197 501036 chr14:28778332-28778418+ NoOverlap chr14 28778332 28778418 + 4.19339310506 29 0.915389249756 2.58314140501 1.61025170006 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28778331;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28778332-28778418%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28778332-28778418&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.428264042259 0.21534302409 0.518109602741 29247538 29247624 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29247537;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28778332-28778418%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29247538-29247624&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQQLVLTCIGVVDSVDLNCCPSFQAFPVNEPENTRQVVNNRFNECAKRATGCTELSG Same 502928 chr14:28778332-28778418+ 14219 14219 -22 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.51724137931 1.61111111111 -0.475524137931 0.9792 -1.51905517241 1.04353103448 0.0200946640375 0.448774327636 32576 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -5.49045172414 0.8706 -5.64806896552 0.157617241379 -0.0115716661974 0.434846666581 41881 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.0 ENST00000552957.5,ENST00000399387.8 NC,NCintron not annotated putative regulatory region 14212 592409 chr9:92157355-92157444- NoOverlap chr9 92157355 92157444 - 6.88300333222 30 0.211347117316 2.37601001064 4.50699332158 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;92157354;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A92157355-92157444-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A92157355-92157444&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0939654839247 0.215162450607 0.876202549636 94919637 94919726 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;94919636;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A92157355-92157444-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A94919637-94919726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSAFSTWEKELHKIVFDPRYLLLNSEERKQVTGWEGTLTAETQHESDCCILDLGSFSLLNNR Same 593361 chr9:92157355-92157444- 16208 16208 -1996 0 9587 92157355 92157444 Best 14212 14212 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:92157355-92157444&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.681818181818 2.93129333333 0.0971 1.44226666667 1.48902666667 0.045294739224 0.512551482165 24231 Best 24231 24231 56.21965 0.5737 16.9141066667 39.3055433333 0.97354298544 1.03518932035 1531 Best 1531 1531 0.622619915812 chr10:131104265-131104354- 0.539947164672 chr10:131104265-131104354- ENST00000415471.2,ENST00000416438.6 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 14238 572459 chr6:108166012-108166092+ NoOverlap chr6 108166012 108166092 + 3.5947962911 27 0.840902655918 -0.12130732448 3.71610361558 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108166011;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108166012-108166092%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108166012-108166092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.245751066297 0.214841235681 0.778930887986 108487216 108487296 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108487215;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108166012-108166092%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108487216-108487296&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSGPGTPYSPPRGCLSERFWRYYRGPSPQRQAQSHGVMNFGDPSPLR Same 573486 chr6:108166012-108166092+ 14069 14069 169 0 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.675 -4.29816296296 0.9892 -8.19414074074 3.89597777778 -0.0390712594593 0.654725437991 66030 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 -10.9813111111 0.5659 -16.9669444444 5.98563333333 -0.00609028125026 0.634745934953 38625 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000368986.8 UTR5 not annotated putative regulatory region 14247 577645 chr7:27130933-27131019+ NoOverlap chr7 27130933 27131019 + 4.01370348088 29 0.736460380476 1.12571032705 2.88799315383 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27130932;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130933-27131019%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27130933-27131019&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.301949084257 0.214751375875 0.689951511541 27170552 27170638 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27170551;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130933-27131019%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27170552-27170638&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FEPLLPSPARAPPRAPRAAPPPMGAPRARTRIRKRAGA Same 578684 chr7:27130933-27131019+ 14739 14739 -492 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.804597701149 1.2325 -4.19155517241 0.8804 -4.65611724138 0.464562068966 -0.0756746618859 0.369713202957 73269 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -8.45123103448 0.4475 -11.5619586207 3.11072758621 -0.0240500011333 0.545013209861 51615 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000317201.6,ENST00000467897.2 NCintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 14256 578733 chr7:99032894-99032944+ NoOverlap chr7 99032894 99032944 + 8.05262357347 17 0.402585955417 3.17740591988 4.87521765359 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;99032893;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A99032894-99032944%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A99032894-99032944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.126127941521 0.214586542626 0.788446008386 98630517 98630567 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;98630516;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A99032894-99032944%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A98630517-98630567&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLQNCHSTLEFLLLSQVLWLLSSDDDKNILAETPSQK Same 579775 chr7:99032894-99032944+ 15613 15613 -1357 0 9609 99032894 99032944 Best 14256 14256 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:99032894-99032944&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.392156862745 0.0 23.9755647059 0.8882 14.1491705882 9.82639411765 0.768507073031 0.857532525381 1795 Best 1795 1795 20.9478764706 0.379 11.3145705882 9.63330588235 0.51374398053 0.712142974216 3479 Best 3479 3479 0.940558936437 chr7:98990455-98990619+ 0.688981078144 chr7:98990455-98990619+ ENST00000360902.1,ENST00000361125.1 NC,AntiCDSintron not annotated potentially spurious 14294 579671 chr7:142400316-142400369+ NoOverlap chr7 142400316 142400369 + 4.7142723004 18 0.717135033867 -1.33503897323 6.04931127363 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142400315;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142400316-142400369%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142400316-142400369&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.140138368044 0.214187850886 0.93615980966 142231634 142231581 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142231633;-52;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142400316-142400369%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142231634-142231581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SNTEDLPLTLESAASSQTSVYFCASSESTVLHSCLLSAHK None NA NA 0 362 142381077 142408131 503 503;2671;2771;4607;6492;14294;16204;21550;22314 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142381077-142408131&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.27 6.81459444444 0.882 -2.59897222222 9.41356666667 0.435235537744 0.997216351007 3654 2259 2259;2284;2682;2903;3300;3654;22326;44473;52081 13.9354222222 0.4717 -3.44723888889 17.3826611111 0.667949862828 0.98106068864 2937 2619 2619;2643;2937;3046;3257;3635;4345;4428;8592 0.0 0.0 ENST00000390364.3 NC immunoglobulin segment overlaps an immunoglobulin region 14312 497651 chr12:130424538-130424564- NoOverlap chr12 130424538 130424564 - 11.9494109286 9 0.8552461365 8.62111155192 3.3282993767 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;130424537;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A130424538-130424564-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A130424538-130424564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.288201255153 0.213957964314 0.38962583874 130909083 130909109 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;130909082;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A130424538-130424564-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A130909083-130909109&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSGAVPHVEDFLLEDRGCRFSR Same 499664 chr12:130424538-130424564- 13994 13994 318 0 478 130414095 130424786 705 705;1088;2060;14312;67443 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:130414095-130424786&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.701298701299 11.6401555556 0.9299 0.207533333333 11.4326222222 0.388116680377 0.976538666727 4152 981 981;1927;2532;4152;47833 48.7374555556 0.9519 -1.85795555556 50.5954111111 0.979077207295 0.980300467307 1440 1381 1381;1440;1513;3885;39756 0.0 0.116270873033 chr17:58308541-58309380- ENST00000261655.8 CDSintron coding exon(s) RIMBP2 3 cassette exons 14342 588656 chr9:23831500-23831562+ NoOverlap chr9 23831500 23831562 + 4.55048087807 21 0.98624362845 0.147109664622 4.40337121345 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23831499;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23831500-23831562%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23831500-23831562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.24225140653 0.213651128008 0.805038393857 23831498 23831560 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23831497;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23831500-23831562%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23831498-23831560&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LRPGETQRLEKQLSYQPAAEMEMA Same 589602 chr9:23831500-23831562+ 16924 16924 -2582 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.587301587302 0.5625 0.796933333333 0.9897 -4.17455714286 4.97149047619 0.145579130732 0.750221830373 11864 Best 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -6.47801428571 0.6258 -10.9078333333 4.42981904762 0.00511181940716 0.567139365143 32893 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000423440.2 NC not annotated putative regulatory region 14345 492533 chr12:79935096-79935122+ NoOverlap chr12 79935096 79935122 + 10.8240557379 9 0.8992260285 4.8842889381 5.93976679982 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;79935095;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A79935096-79935122%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A79935096-79935122&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.258805955568 0.213624410888 0.723194383563 80328876 80328902 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;80328875;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A79935096-79935122%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A80328876-80328902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALGRRTRPSGPPFLPQKPSRPQHGHPSPAANLT Same 494515 chr12:79935096-79935122+ 13084 13084 1261 0 1500 79934559 79935332 2233 2233;6832;14345;23299 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:79934559-79935332&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.851851851852 1.03846153846 7.15733333333 0.9325 3.04867777778 4.10865555556 0.097904828645 0.540159339026 16080 7188 7188;11401;16080;58885 4.58894444444 0.4589 -6.35355555556 10.9425 0.104153872332 0.745477919478 11130 8714 8714;10259;11130;55960 0.0 0.0 ENST00000552885.2,ENST00000450142.6,ENST00000261207.9 NC,AntiUTR5,AntiUTR5intron not annotated putative regulatory region 14365 508737 chr15:45201141-45201221- NoOverlap chr15 45201141 45201221 - 3.53071850262 27 0.755419354656 -0.582733329386 4.11345183201 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;45201140;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45201141-45201221-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A45201141-45201221&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.187686864947 0.213368584117 0.824403759652 45493339 45493419 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;45493338;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45201141-45201221-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A45493339-45493419&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPLPYHCFHNAVTRIRTEVAAATTQSTNHYTITASYR Same 510461 chr15:45201141-45201221- 14753 14753 -388 0 1111 45198578 45201222 1685 1685;3658;6770;7314;14365;15805;20741;57385 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:45198578-45201222&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.592592592593 1.40869565217 -0.954522222222 0.995 -5.7115962963 4.75707407407 0.111592749655 0.76379735659 14727 5595 5595;8787;14727;17218;22093;24393;42532;65917 -1.87116296296 0.3503 -6.7838 4.91263703704 0.0607621951277 0.638355525269 16682 8460 8460;15084;16682;28123;29490;30928;42026;53935 0.0 0.0 ENST00000290894.12 UTR5 not annotated 3 tRNAs 14397 522924 chr17:67993533-67993853- NoOverlap chr17 67993533 67993853 - 2.91787287871 107 0.319545309669 0.777918705908 2.13995417281 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;67993532;321;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A67993533-67993853-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A67993533-67993853&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132749400356 0.213014973878 0.713676382732 65989649 65989969 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;65989648;321;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A67993533-67993853-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A65989649-65989969&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAEVAPAARAWPDPRRRKPPPPADNQASFREAARAPAGPPGPRLAQAENRASPRREPASEDAPRRARSRALRFPAARPPALATEGSAGHAHPNRPRAAALAPGPAPAPPPRFSLSFGLSPPQR Same 524359 chr17:67993533-67993853- 11627 11627 2770 0 538 67993147 67996207 816 816;971;14397;15782;34535 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:67993147-67996207&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.85046728972 1.22491582492 3.78766074766 0.2894 1.18833084112 2.59932990654 0.255855702399 0.695634527426 6794 535 535;740;4772;6794;48625 0.607795327103 0.3069 -0.663218691589 1.27101401869 0.102108926877 0.570447743197 11308 946 946;1766;4259;11308;63387 0.0 0.208617565418 chr16:582883-583634+ ENST00000334461.7 UTR5 coding exon(s) C17orf58 alternative 5' extension 14458 525743 chr18:39841629-39841658- NoOverlap chr18 39841629 39841658 - 6.77931998968 10 0.87116350042 -2.29729998112 9.0766199708 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;39841628;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A39841629-39841658-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A39841629-39841658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0697486547543 0.21227556545 1.02865151114 37421593 37421622 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;37421592;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A39841629-39841658-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A37421593-37421622&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WQQDSEAGAALGSPFWSIFLNR Same 527186 chr18:39841629-39841658- 13632 13632 826 0 9720 39841629 39841658 Best 14458 14458 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:39841629-39841658&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.633333333333 0.340909090909 6.14015 0.9683 -0.18785 6.328 0.174415964756 0.74217598738 10036 Best 10036 10036 3.02486 0.3947 -3.76691 6.79177 0.0306964333345 0.593048577669 23538 Best 23538 23538 0.0 0.0 ENST00000585822.1 NC not annotated potentially spurious 14465 539225 chr2:73071669-73071779- NoOverlap chr2 73071669 73071779 - 3.43768103542 37 0.843390059778 1.41412706391 2.0235539715 ENST00000272433.6,ENST00000410065.5,ENST00000411783.5,ENST00000442582.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;73071668;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73071669-73071779-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A73071669-73071779&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.370128377848 0.21222032267 0.629147561526 73298798 73298908 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;73298797;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73071669-73071779-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A73298798-73298908&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQSGEAAVAGAEEGHFKRAGDCGRQWPWRIQRLQHRRRR Same 540603 chr2:73071669-73071779- 14535 14535 -70 0 311 73071669 73081530 418 418;1129;1310;1891;4235;7622;14465;18194;23824;54581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:73071669-73081530&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.11 -5.43774864865 0.9938 -7.51695405405 2.07920540541 -0.102601123655 0.507902341369 73713 166 166;734;1495;1711;1973;3802;9955;14922;47668;73713 -7.35374324324 0.4236 -8.64512162162 1.29137837838 -0.0308484787115 0.505145376531 57875 2300 2300;2572;2797;3173;3182;4993;30735;31537;41635;57875 0.0 0.0 ENST00000272433.6,ENST00000416579.5,ENST00000485057.5 CDS,NC,NCintron coding exon(s) RAB11FIP5 2kb cassette exon 14466 500745 chr14:22483036-22483062+ NoOverlap chr14 22483036 22483062 + 10.3293443786 9 0.999111585836 3.63369992044 6.69564445813 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22483035;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22483036-22483062%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22483036-22483062&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.230962091243 0.212214470849 0.812512712242 22952025 22952051 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22952024;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22483036-22483062%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22952025-22952051&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTFGKGTLLTVNPSK None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.407407407407 0.9 9.15342222222 0.9965 0.847444444444 8.30597777778 0.360514810906 0.850429384511 4521 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 12.8059111111 0.4227 -1.25311111111 14.0590222222 0.266083557779 0.826614324695 4994 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390485.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 14484 594046 chr9:136253849-136253878- NoOverlap chr9 136253849 136253878 - 11.7358401537 10 0.647104600595 8.37644984722 3.35939030647 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136253848;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136253849-136253878-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136253849-136253878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.276579266187 0.212036455017 0.421544121187 139145695 139145724 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139145694;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136253849-136253878-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139145695-139145724&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGPGGNGAPTVLEEACPLLAGDVLTEILSPVDELLSYGSADLPSSIHR Same 595002 chr9:136253849-136253878- 15127 15127 -643 0 518 136245441 136267514 774 774;1246;1671;1737;14484;26677;40966;49975;52795 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136245441-136267514&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.566666666667 0.833333333333 21.72337 0.8942 12.11329 9.61008 0.541859643279 0.759886768216 2860 109 109;1226;1522;2295;2801;2860;36147;58996;63557 21.23198 0.4818 8.75498 12.477 0.477269100336 0.741436155041 3628 1329 1329;2089;2472;2567;3628;6432;23671;29069;54815 0.0 0.00473306836593 chr2:27102526-27102591- not annotated putative regulatory region 14508 517328 chr17:39410436-39410654+ NoOverlap chr17 39410436 39410654 + 1.82126985184 73 0.907972629913 -0.922043846895 2.74331369874 ENST00000300651.10,ENST00000394287.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;39410435;219;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A39410436-39410654%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A39410436-39410654&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.191740476632 0.21171466482 0.790153407458 37566689 37566907 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;37566688;219;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A39410436-39410654%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A37566689-37566907&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLAEVLPMAHRLMPIFDAHAHIKQGGNGTPRKGVGWCSGTTHWVVACGHAIPWAASRGQVLFHHVFNCLCNEGQCWGVGLNGFSFPPNSPHR Same 518724 chr17:39410436-39410654+ 12221 12221 2287 0 535 39402672 39410654 809 809;14508;23729;24139;52387 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:39402672-39410654&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.538812785388 0.252304147465 -0.930615068493 1.0 -2.30092876712 1.37031369863 0.162220426924 0.526122235599 10767 6041 6041;10767;32183;36588;67635 -22.346760274 0.9271 -27.1206506849 4.77389041096 -0.0385388822933 0.615951143144 64135 4722 4722;27606;32663;35437;64135 0.0 0.0 ENST00000300651.10,ENST00000577831.5 AntiCDS,AntiNC not annotated putative regulatory region 14519 496192 chr12:70448546-70448587- NoOverlap chr12 70448546 70448587 - 4.93775718553 14 0.439427132721 -10.3631785086 15.3009356941 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70448545;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70448546-70448587-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70448546-70448587&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00151750275665 0.21160797106 0.938263183332 70842326 70842367 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70842325;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70448546-70448587-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70842326-70842367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ACQNVGTTTHLAQTFAAMMTGATCYNCGQTGHMAKEC Same 498192 chr12:70448546-70448587- 9678 9678 4841 0 155 70445357 70448659 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.47619047619 0.424242424242 -0.620692857143 0.1394 -4.93057142857 4.30987857143 0.0234258369176 0.63090475562 31236 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 4.28379285714 0.1973 -22.0846785714 26.3684714286 0.292343144828 1.07910064738 4709 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 14522 479625 chr10:129854097-129854132+ NoOverlap chr10 129854097 129854132 + 5.46008312205 12 0.844570331375 -3.06112506986 8.52120819191 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129854096;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129854097-129854132%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129854097-129854132&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0345814221964 0.211593231644 1.0286818629 131652361 131652396 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131652360;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129854097-129854132%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131652361-131652396&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPCPHQSAFIIPPQKHYTKSANACFFSLF Same 481530 chr10:129854097-129854132+ 13997 13997 525 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.361111111111 0.0 0.675166666667 0.9663 -7.090475 7.76564166667 0.0605544937293 0.870944076253 21162 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -3.4075 0.732 -13.5464666667 10.1389666667 0.0506069400855 0.741901250433 18624 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 14541 467697 chr1:160262416-160262472+ NoOverlap chr1 160262416 160262472 + 5.62262109079 19 0.837966855798 3.01238430566 2.61023678513 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;160262415;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160262416-160262472%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A160262416-160262472&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.378764288597 0.211309584005 0.554723180124 160232206 160232262 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;160232205;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160262416-160262472%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A160232206-160232262&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFQAQPPRPLPPPTPPPSYTGQRPPPPPPPLSALAPALPR Same 469563 chr1:160262416-160262472+ 14144 14144 397 0 695 160262310 160262658 1078 1078;1192;6610;14541;28188 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:160262310-160262658&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.701754385965 0.95 7.19841578947 0.8744 1.58795263158 5.61046315789 0.349661710059 0.780253396563 4685 3400 3400;4685;5491;10173;13442 8.49232631579 0.3029 2.30864736842 6.18367894737 0.185699721594 0.635615067883 6638 6373 6373;6638;7045;12631;15012 0.0 0.0 ENST00000442130.1,ENST00000326837.6,ENST00000461888.5,ENST00000485079.1 NC,AntiUTR5,AntiNC,AntiCDSintron not annotated putative regulatory region 14566 541018 chr2:173198401-173198451- NoOverlap chr2 173198401 173198451 - 4.4628999654 17 0.917364318124 -1.93717648352 6.40007644892 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;173198400;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198401-173198451-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A173198401-173198451&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.108629175217 0.211015115498 0.956421802766 174063129 174063179 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;174063128;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198401-173198451-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A174063129-174063179&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DVLNAGDGVKLFPYLGRNGFFHH Same 542389 chr2:173198401-173198451- 15151 15151 -585 0 8077 173198177 173198791 11645 11645;14566;27301;64264;68000;70384;71375 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:173198177-173198791&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.509803921569 0.603550295858 0.838117647059 0.9876 -1.4488 2.28691764706 0.0374944498118 0.483743505092 26281 17915 17915;26281;30225;52527;56025;63590;73136 -0.641276470588 0.5993 -2.48125882353 1.83998235294 0.0224038305103 0.446700479917 26199 Best 26199 26199;30281;33015;38868;44044;58152;65076 0.0 0.0 ENST00000423106.2,ENST00000419609.5,ENST00000338983.7,ENST00000476618.5 NC,NCintron,AntiCDSintron,AntiNCintron not annotated potentially spurious 14586 479916 chr10:8037394-8037456- NoOverlap chr10 8037394 8037456 - 5.99756648853 21 0.56089984632 2.2832856604 3.71428082812 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8037393;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8037394-8037456-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8037394-8037456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.222874826491 0.210820703345 0.715146498243 8079357 8079419 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8079356;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8037394-8037456-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8079357-8079419&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHPHWRRPGAPRTRSRAKMSRKPLEK Same 481824 chr10:8037394-8037456- 15139 15139 -553 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.698412698413 1.04347826087 -0.279638095238 0.9616 -4.7305047619 4.45086666667 0.0693514566707 0.702247661054 19787 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -2.43822857143 0.7886 -12.280752381 9.84252380952 0.154193615051 0.802303123852 7819 Best 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 not annotated putative regulatory region 14589 546545 chr21:26170753-26170881+ NoOverlap chr21 26170753 26170881 + 2.81761162087 43 0.681692190042 -0.391706989255 3.20931861012 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;26170752;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A26170753-26170881%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A26170753-26170881&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.149254361558 0.210794257931 0.809686345221 27543071 27543199 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;27543070;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A26170753-26170881%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A27543071-27543199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLSPTAAEETDGARARRRGSEPGESADPAHPARHPRETPSGAAGELRPLAPGGALAPR Same 547961 chr21:26170753-26170881+ 15749 15749 -1160 0 1496 26169453 26170881 2228 2228;14589;18597;43146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:26169453-26170881&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.759689922481 0.967097042899 -1.9689255814 0.8288 -7.57485813953 5.60593255814 0.102474160524 0.876039445769 15566 8395 8395;15566;16161;55552 -4.55344883721 0.4316 -12.4386906977 7.88524186047 0.164513507456 0.812435352096 7352 7036 7036;7352;11231;16407 0.0 0.0 ENST00000608591.5,ENST00000455275.1,ENST00000357903.7,ENST00000359726.7 NC,NCintron,AntiUTR5,AntiUTR5intron not annotated putative regulatory region 14641 595946 chrX:153483416-153483442+ NoOverlap chrX 153483416 153483442 + 10.9066555434 9 0.685069047074 1.0018222332 9.90483331018 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;153483415;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153483416-153483442%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A153483416-153483442&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.206049464467 0.210088130525 0.989596176903 152748874 152748900 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;152748873;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153483416-153483442%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A152748874-152748900&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELHLGTNLIEEVAEGALSHIHSLSVLVLSHNWLQEHWLAPRAWIHLP Same 596587 chrX:153483416-153483442+ 16459 16459 -1818 0 1397 153481540 153486067 2093 2093;2101;2242;2901;9240;10410;14641;25631 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:153481540-153486067&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.409090909091 11.0006111111 0.8922 -4.69903333333 15.6996444444 0.354547117026 1.02523715908 4610 1899 1899;2169;2617;3156;4527;4610;7126;15622 43.6901777778 0.8019 2.83643333333 40.8537444444 1.0353570443 1.00250295786 550 Best 550 550;891;987;1399;1497;1593;2015;2812 0.0 0.217701766524 chr9:92502513-92502652- ENST00000370210.3 AntiUTR5intron pseudogene unitary pseudogene ENSG00000224963 14705 479636 chr10:129868509-129868535+ NoOverlap chr10 129868509 129868535 + 6.55341119236 9 0.820079177369 -3.9969331291 10.5503443215 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129868508;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129868509-129868535%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129868509-129868535&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.019109858458 0.209309200517 1.04456958399 131666773 131666799 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131666772;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129868509-129868535%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131666773-131666799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAGVTSLCLGSSR Same 481541 chr10:129868509-129868535+ 14122 14122 583 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.771428571429 4.05968888889 0.9488 -2.01245555556 6.07214444444 0.0490422129624 0.718143106331 23377 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 0.0291666666667 0.7371 -6.33716666667 6.36633333333 0.0217675258711 0.568398644402 26398 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 14723 473855 chr1:120620702-120620731- NoOverlap chr1 120620702 120620731 - 10.3076497078 10 0.906875715267 7.10361998081 3.20402972698 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;120620701;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120620702-120620731-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A120620702-120620731&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.305429082112 0.209114156353 0.438596141545 144994938 144994967 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;144994937;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A120620702-120620731-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A144994938-144994967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YLPEVKKESVLR Same 475734 chr1:120620702-120620731- 14294 14294 429 0 206 120620337 120620731 253 253;14723 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:120620337-120620731&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4 0.0 8.57627 0.951 7.39579 1.18048 0.127694308703 0.290668168446 13273 2142 2142;13273 1.71622 0.6751 4.51773 -2.80151 -0.0289468452376 0.21739115348 56178 427 427;56178 0.392064526104 chr1:148889491-148889529+ 0.491113623676 chr1:148889491-148889529+ pseudogene phosphodiesterase 4D interacting protein (PDE4DIP) transcribed unprocessed pseudogene (ENSG00000275131) 14755 585591 chr8:143789199-143789240+ NoOverlap chr8 143789199 143789240 + 5.88927858216 14 0.633276656966 -2.22476425767 8.11404283983 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143789198;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143789199-143789240%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143789199-143789240&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0910864101773 0.208750560487 1.02249250473 144871369 144871410 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144871368;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143789199-143789240%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144871369-144871410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGAGGGAGGSLCPSSFLLLSMTLKVQQLTREQQQCHK Same 586528 chr8:143789199-143789240+ 15684 15684 -929 0 75 143788915 143790593 85 85;88;331;613;845;2035;14755 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143788915-143790593&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.0 14.5213428571 0.875 -4.64082857143 19.1621714286 0.630648170433 0.988600835935 2390 92 92;111;801;1056;1111;2067;2390 8.6916 0.522 -14.9672428571 23.6588428571 0.578492414696 1.06556382584 3235 116 116;127;431;967;1717;2161;3235 0.0 0.0662339866025 chrX:153785081-153785173+ ENST00000527139.5 NC protein-coding gene protein-coding gene ENSG00000203499 14761 546504 chr21:16588653-16588760+ NoOverlap chr21 16588653 16588760 + 3.82910005748 36 0.820989208481 2.42311386102 1.40598619646 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;16588652;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16588653-16588760%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A16588653-16588760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.438949856382 0.208588692444 0.538377154844 17960973 17961080 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;17960972;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16588653-16588760%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A17960973-17961080&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSLCICMPVCARVLARASVSSRGEGVACECVEGKSQSVSEKQRYVGEQLK Same 547920 chr21:16588653-16588760+ 15119 15119 -358 0 5231 16588460 16588760 7260 7260;14761;22254;32313 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:16588460-16588760&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62037037037 1.03404255319 0.14895 0.9775 -0.20265 0.3516 0.0483814022348 0.421459507129 23524 3953 3953;23524;44551;65667 -6.4633 0.6439 -3.57898611111 -2.88431388889 -0.0467888208813 0.333933750605 69840 14629 14629;66878;69840;73603 0.0 0.0 ENST00000602323.1,ENST00000400178.6 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 14787 516239 chr17:7438225-7438260+ NoOverlap chr17 7438225 7438260 + 7.60702501734 12 0.65080364182 -0.245824913184 7.85284993052 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7438224;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7438225-7438260%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7438225-7438260&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.161859588103 0.208198489567 0.985907905152 7341544 7341579 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7341543;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7438225-7438260%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7341544-7341579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHPPISQRLRPLPRPRAGSPR Same 517613 chr17:7438225-7438260+ 15943 15943 -1156 0 708 7420340 7438334 1096 1096;1905;1920;2283;5350;13988;14787;48569;72692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7420340-7438334&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.861111111111 0.909090909091 -0.354525 0.8796 -13.8816083333 13.5270833333 0.129787332561 1.05756907702 13112 1008 1008;1355;2074;2394;2819;5308;13112;27391;64992 -11.1352666667 0.5235 -17.8901666667 6.7549 -0.0329747392692 0.565171452441 59755 3602 3602;3907;7062;7245;8899;17053;24490;30052;59755 0.0 0.087134535839 chr19:55517224-55518998+ ENST00000575310.1 NCintron protein-coding gene protein-coding gene ENSG00000283439 14799 671638 chr19:48469354-48469506- Extension chr19 48469354 48469506 - 3.66785878936 51 0.946781617965 3.60055101181 0.0673077775567 chr19:48469354-48469527- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48469353;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469354-48469506-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48469354-48469506&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.534024166861 0.208109508848 0.420468384613 48972611 48972763 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48972610;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469354-48469506-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48972611-48972763&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPSSMAARKARGESGAVPPVGPGSALARGLG*ARSNAPGATAASSAPVLSAEKTLPFVAQPPLQ Same 672235 chr19:48469354-48469506- 14659 14659 140 24 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.738562091503 0.914150943396 4.08127254902 0.9275 3.96313333333 0.118139215686 0.2975225457 0.476916524898 5683 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -0.599531372549 0.4203 -2.42174313725 1.82221176471 0.104269937921 0.579945393589 11118 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.0272285417853 chr1:161042833-161042882- ENST00000600650.1,ENST00000427476.4,ENST00000391881.7,ENST00000595676.1 NC,AntiUTR5,AntiNC,AntiUTR5intron coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 14809 532006 chr19:51917587-51917661- NoOverlap chr19 51917587 51917661 - 2.88762012362 25 0.505577172503 -4.00803193003 6.89565205365 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51917586;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51917587-51917661-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51917587-51917661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000756584597007 0.208014959445 1.0303024074 52420840 52420914 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52420839;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51917587-51917661-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52420840-52420914&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DVAVGFTWEEWQLLDPVQKNLYQDVMLENYSNLVSLGK Same 533483 chr19:51917587-51917661- 14857 14857 -48 0 163 51914745 51917661 195 195;409;1357;1730;14809 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51914745-51917661&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.44 0.281954887218 3.241152 0.5423 -5.188032 8.429184 0.187606332559 1.00762454047 9331 301 301;1224;3007;3293;9331 16.633408 0.5005 -14.02774 30.661148 0.976898689254 1.0074655134 1476 673 673;959;1476;1923;2031 0.163367654457 chr19:51940209-51940335+ 0.463043336671 chr19:56390375-56390501- ENST00000613007.4 AntiUTR5intron pseudogene zinc finger protein pseudogene (ENSG00000283285) 14824 510483 chr16:3144507-3144533+ NoOverlap chr16 3144507 3144533 + 10.7334000799 9 0.803848664412 3.88758901093 6.84581106901 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3144506;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144507-3144533%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3144507-3144533&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.237720522785 0.2078526721 0.813452573497 3194508 3194534 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3194507;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3144507-3144533%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3194508-3194534&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFLEELAWFQEQLDAHGRPVGCALVALMPPEGS Same 512124 chr16:3144507-3144533+ 14369 14369 455 0 256 3144015 3150751 334 334;814;1899;3328;3506;5705;11798;14824;15461;50287;55094 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3144015-3150751&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.0 12.1504111111 0.9931 -2.26901111111 14.4194222222 0.589305490857 1.02305213907 2601 167 167;1186;1262;1661;1809;1880;2134;2541;2601;5815;43459 5.11817777778 0.6274 -6.2869 11.4050777778 0.186073476733 0.761560390869 6623 1889 1889;2882;2930;3314;3490;3499;6163;6623;16490;31726;59008 0.0 0.172005943728 chr17:49224246-49225124- ENST00000428155.1,ENST00000571356.5,ENST00000575497.5 UTR5,NC,NCintron pseudogene extension CASP16P pseudogene extended (ENSG00000228146) 14859 481631 chr10:100121044-100121079- NoOverlap chr10 100121044 100121079 - 6.51032505433 12 0.81206988632 -1.05693349242 7.56725854675 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100121043;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100121044-100121079-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100121044-100121079&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.149848468221 0.207468304454 0.981386951697 101880801 101880836 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101880800;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100121044-100121079-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101880801-101880836&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CGGCYFLTSAQPFDSTFILASAPCNLPAPSSSR Same 483547 chr10:100121044-100121079- 14405 14405 454 0 90 100105748 100122651 105 105;606;781;1442;2015;3184;14859;17791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100105748-100122651&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.48 7.67018333333 0.7526 -1.69265833333 9.36284166667 0.206104395757 0.946245946775 8530 2120 2120;2485;2770;2888;8530;10411;15939;19257 14.9126333333 0.5458 -6.23865 21.1512833333 0.639151174366 1.0139415941 3020 209 209;267;1101;3020;3409;3819;4117;17036 0.0 0.377148694358 chr10:133532124-133532284+ pseudogene unitary pseudogene ENSG00000283232 14877 577727 chr7:27184794-27184865+ NoOverlap chr7 27184794 27184865 + 4.60056664546 24 0.829557361206 2.21070836236 2.3898582831 ENST00000006015.3,ENST00000517402.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27184793;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184794-27184865%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27184794-27184865&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.373683829347 0.207222112932 0.580823656168 27224413 27224484 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27224412;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184794-27184865%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27224413-27224484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DCGGGVVVDVGRALGQHVARHAGRAGRLQAVSVHELLR Same 578766 chr7:27184794-27184865+ 14691 14691 186 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.736111111111 0.931034482759 -3.44504583333 0.9563 -3.04978333333 -0.3952625 -0.0716145980865 0.288830974545 73132 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -20.9148291667 0.8611 -23.7076375 2.79280833333 -0.0396723826619 0.386031535322 64983 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000520360.5,ENST00000006015.3 NC,AntiCDS not annotated putative regulatory region 14963 591038 chr9:135616938-135617015+ NoOverlap chr9 135616938 135617015 + 3.26743837561 26 0.424673838407 -3.79290003673 7.06033841234 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;135616937;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A135616938-135617015%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A135616938-135617015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0124017716406 0.206107342884 1.03968242388 138508784 138508861 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;138508783;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A135616938-135617015%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A138508784-138508861&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASAGPGSPTVEGGSMHVCFVSTDYSNLILYVRFEDDEITNLWVLLGK Same 591992 chr9:135616938-135617015+ 14178 14178 785 0 846 135614297 135617015 1311 1311;7491;10481;14963 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:135614297-135617015&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.525641025641 0.557142857143 9.68101538462 0.6409 -4.79154230769 14.4725576923 0.724615495862 1.03415520556 1990 1303 1303;1990;3552;3873 5.31896153846 0.291 -12.8277615385 18.1467230769 0.518611099766 1.05642111104 3460 2809 2809;3460;7027;8972 0.0 0.100135428906 chr15:90087439-90087575- protein-coding gene protein coding gene ENSG00000236543 15091 511034 chr16:28259225-28259263+ NoOverlap chr16 28259225 28259263 + 8.57546156186 13 0.779667940208 6.65468460665 1.92077695521 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;28259224;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A28259225-28259263%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A28259225-28259263&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.362950148129 0.204472255385 0.359884624989 28270546 28270584 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;28270545;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A28259225-28259263%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A28270546-28270584&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QTEPPAPPPTEATGNLSEKAQVAGGQVQSPEADGLLTLERPGSGTPAQAGDDAAEATPGHPCPVLELPPAWPMGCGVDDVPAFCFVCFHR Same 512674 chr16:28259225-28259263+ 14837 14837 254 0 360 28259225 28259497 499 499;15091;54523 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:28259225-28259497&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.692307692308 0.722222222222 13.7678769231 0.9771 9.18615384615 4.58172307692 0.538786278934 0.58265531744 2877 135 135;2877;3068 11.4129153846 0.4468 4.17763846154 7.23527692308 0.244811550105 0.617580206065 5298 2069 2069;4819;5298 0.0 0.0 under investigation SBK1 potential non-ATG start 15109 485270 chr11:67539108-67539134+ NoOverlap chr11 67539108 67539134 + 8.2238223503 9 0.656393954036 -5.69853313764 13.9223554879 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;67539107;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67539108-67539134%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A67539108-67539134&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0628942285801 0.204182411697 0.997040515078 67306579 67306605 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;67306578;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A67539108-67539134%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A67306579-67306605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPWSVSPHTSNWNQSCSQEVGKAQCVQELPGTWSLLRPSDPEPGMTGLHCGQQGER Same 487226 chr11:67539108-67539134+ 14975 14975 134 0 418 67538911 67540581 590 590;7079;8327;9330;15109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:67538911-67540581&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.0 22.9298111111 0.9695 -14.1578 37.0876111111 0.329950641084 0.967475271989 5012 51 51;1631;1897;1917;5012 32.0665222222 0.4039 -15.4542333333 47.5207555556 0.388337856015 0.98780069375 4027 118 118;3030;3177;3475;4027 0.252143795835 chr11:67586104-67586211+ 0.432478678514 chr11:67586104-67586211+ pseudogene glutathione S-transferase pi 1 (GSTP1) unprocessed pseudogene (ENSG00000283257) 15135 573885 chr6:15245991-15246077- NoOverlap chr6 15245991 15246077 - 3.83892422606 29 0.844369552463 1.39155860399 2.44736562207 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;15245990;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245991-15246077-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A15245991-15246077&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.343404588771 0.203974370385 0.632724264742 15246222 15246308 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;15246221;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245991-15246077-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A15246222-15246308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VNSSGGGGGGGSTTARARRVSFFQAP*PMR Same 574914 chr6:15245991-15246077- 15020 15020 115 2 1766 15244943 15246114 2604 2604;15135;20464;24558;26329;27078;34912;61691;69748 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:15244943-15246114&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.67816091954 1.00694444444 2.16344827586 0.8837 0.869520689655 1.29392758621 0.0963769775986 0.485682812659 16260 9551 9551;16260;24695;37413;40709;45352;56150;59595;63982 -0.876496551724 0.5761 -4.64396206897 3.76746551724 0.117602549999 0.60114374009 10022 Best 10022 10022;12289;27835;30484;54557;56016;61735;63783;63901 0.0 0.0 not annotated putative regulatory region 15160 482382 chr10:117553506-117553565- NoOverlap chr10 117553506 117553565 - 3.81068495214 20 0.644537270161 -2.79738501906 6.6080699712 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117553505;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117553506-117553565-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117553506-117553565&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0394796042865 0.203741996006 0.990791783412 119313017 119313076 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119313016;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117553506-117553565-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119313017-119313076&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WGAADEWTLRFQAWRRLEFSGAPGPAGEATSR Same 484309 chr10:117553506-117553565- 16144 16144 -984 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.683333333333 1.0 -8.9947 0.9839 -13.442445 4.447745 -0.0526131462032 0.636611431274 71610 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -19.452275 0.6941 -25.4533 6.001025 -0.0350584015987 0.489276798856 61500 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.244838861215 chr20:9580145-9580930- not annotated putative regulatory region 15243 479599 chr10:129845618-129845698+ NoOverlap chr10 129845618 129845698 + 2.71093337072 27 0.897283046379 -2.58330739427 5.294240765 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129845617;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129845618-129845698%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129845618-129845698&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.032737189806 0.20259377364 0.940630318858 131643882 131643962 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131643881;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129845618-129845698%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131643882-131643962&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AIILLVLAWGYEYIEECRAIRCSYFKKRGKEDEF Same 481504 chr10:129845618-129845698+ 15680 15680 -437 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.41975308642 0.320158102767 -1.3589 0.9836 -2.55205555556 1.19315555556 -0.0119314673804 0.445984874894 48427 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -7.21719259259 0.9302 -7.21640740741 -0.000785185185186 -0.0279918284316 0.413023146032 55286 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000614150.1,ENST00000355311.9 NC,AntiCDSintron not annotated potentially spurious 15254 510858 chr16:20728219-20728245+ NoOverlap chr16 20728219 20728245 + 11.4638888041 9 0.6069225096 -2.57947762807 14.0433664322 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20728218;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20728219-20728245%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20728219-20728245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.196062887191 0.202469596878 1.00116674344 20739541 20739567 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20739540;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20728219-20728245%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20739541-20739567&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNGERMLHYDVQVG Same 512496 chr16:20728219-20728245+ 16608 16608 -1354 0 165 20711460 20732984 197 197;672;695;753;964;1002;1904;2458;2715;3096;3429;13077;15254 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20711460-20732984&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.407407407407 0.0 19.0257 0.9704 -7.42656666667 26.4522666667 0.623146441179 0.955082428986 2423 164 164;259;495;580;621;626;651;703;1506;1971;2351;2423;2728 27.0309888889 0.6849 -18.6467111111 45.6777 0.930032913885 0.978899923854 1940 255 255;369;416;421;1006;1014;1023;1076;1341;1482;1764;1940;2098 0.77470161403 chr12:7323234-7323314+ 0.721417814053 chr12:7323234-7323314+ ENST00000561584.5,ENST00000501740.6 UTR5intron,NCintron pseudogene ACSM3 acyl-CoA synthetase medium chain family member 3 (ENSG00000005187) 15272 522795 chr17:64505471-64505500- NoOverlap chr17 64505471 64505500 - 10.5208601266 10 0.759307240406 6.85100007653 3.66986005008 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;64505470;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64505471-64505500-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A64505471-64505500&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.279150916781 0.202233919198 0.490572769033 62501589 62501618 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;62501588;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64505471-64505500-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A62501589-62501618&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GKRRPSGNAARPTPPGPGLLPR Same 524229 chr17:64505471-64505500- 15105 15105 167 0 785 64497052 64506947 1219 1219;1314;11116;12743;15272;20390;22680;57720;59551 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:64497052-64506947&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 1.16883116883 4.58366 0.9262 1.83331 2.75035 0.0270242635489 0.447082591193 29872 3317 3317;9751;12985;29872;53023;54218;61045;63372;66796 5.62298 0.4795 1.1125 4.51048 0.0584098016554 0.493429305422 17125 5759 5759;11482;17125;20897;41797;70711;70752;72223;73201 0.0 0.0 ENST00000583239.5,ENST00000225792.9,ENST00000581697.5,ENST00000540698.6 UTR5,CDSintron,UTR5intron,NCintron coding exon(s) DDX5 alternative first exon 15328 490634 chr12:9540386-9540421+ NoOverlap chr12 9540386 9540421 + 8.03809159994 12 0.600497189797 0.513874893387 7.52421670655 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9540385;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9540386-9540421%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9540386-9540421&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.160693967309 0.201609302675 0.962115920323 9692982 9693017 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9692981;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9540386-9540421%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9692982-9693017&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LYLLFIFQLENGCVSQIVNTKVFQLYRSGLFMTFHVAVIVTESGTGNYCIFWTTWGYMYGNLLGEAC Same 492610 chr12:9540386-9540421+ 16489 16489 -1161 0 10183 9540386 9540421 Best 15328 15328 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9540386-9540421&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 1.33333333333 14.4418666667 0.8758 4.197275 10.2445916667 0.479982828506 0.937555782923 3275 Best 3275 3275 16.2379333333 0.4622 -1.84459166667 18.082525 0.532057389139 0.950268271524 3414 Best 3414 3414 0.920756614791 chr12:31150173-31150293- 0.736543700289 chr12:31150173-31150293- ENST00000518709.5 NCintron pseudo-exon AC092821.1 pseudo exons 15372 479934 chr10:8054525-8054572- NoOverlap chr10 8054525 8054572 - 6.02656243742 16 0.690730144198 0.817618712783 5.20894372463 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8054524;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8054525-8054572-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8054525-8054572&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.211371141354 0.201024323022 0.833526284394 8096488 8096535 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8096487;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8054525-8054572-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8096488-8096535&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQPKPAPGLLPPPRAPPPLLPPLH Same 481842 chr10:8054525-8054572- 15817 15817 -445 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.791666666667 1.10599078341 -0.12945 0.7529 -1.10103125 0.97158125 -0.0204030745253 0.361851654965 54443 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -4.06211875 0.3555 -5.118975 1.05685625 -0.0273404074219 0.403345480319 54662 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 ENST00000481743.1 AntiNCintron not annotated putative regulatory region 15387 519793 chr17:1716294-1716320- NoOverlap chr17 1716294 1716320 - 7.19645574358 9 0.875671185033 -2.41926659561 9.61572233919 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;1716293;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1716294-1716320-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A1716294-1716320&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.044393628028 0.200815767197 1.03354503674 1619588 1619614 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;1619587;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1716294-1716320-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A1619588-1619614&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQGEAPSAPGWAGPRCPAVGGDWPR Same 521200 chr17:1716294-1716320- 14341 14341 1046 0 960 1713893 1724692 1472 1472;3348;6953;15387;36265;37604;43154 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:1713893-1724692&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.75 2.89791111111 0.9792 -5.4855 8.38341111111 0.0748009838928 0.87842873444 18965 5776 5776;16857;18965;26440;56587;71733;73726 -4.82623333333 0.504 -14.1602888889 9.33405555556 -0.0161838275201 0.679252960664 45206 10479 10479;11209;21855;38681;45206;66911;67671 0.0 0.0 ENST00000571595.5,ENST00000577164.1 NC,NCintron not annotated putative regulatory region 15420 497302 chr12:121059614-121059655- NoOverlap chr12 121059614 121059655 - 7.77661430836 14 0.710431721327 4.50073566181 3.27587864654 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;121059613;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121059614-121059655-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A121059614-121059655&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.308154346934 0.200459510645 0.559121470417 121497417 121497458 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;121497416;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121059614-121059655-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A121497417-121497458&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FIPGPTEMAGFQDLYDTPGDRLDVFIK Same 499314 chr12:121059614-121059655- 15391 15391 29 0 1146 121053768 121059655 1742 1742;3390;7126;9195;12027;15420;18584 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:121053768-121059655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.547619047619 0.0 6.03429285714 0.6181 -3.15394285714 9.18823571429 0.173163839589 0.96075755438 10102 2783 2783;4174;4538;6046;10102;15430;23561 8.75604285714 0.2561 -1.02578571429 9.78182857143 0.146725396856 0.73691569615 8163 2866 2866;2878;4226;4741;5525;5554;8163 0.0 0.156101804071 chr12:112907040-112907219+ pseudogene unitary pseudogene, orthlog of mouse 2'-5' oligoadenylate synthetase-like 2 (Oasl2) (ENSG00000283542) 15422 577661 chr7:27143124-27143276+ NoOverlap chr7 27143124 27143276 + 4.32028817663 51 0.857449918245 5.0605274509 -0.740239274268 ENST00000222726.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27143123;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143124-27143276%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27143124-27143276&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.667805683813 0.200437506735 0.316241896207 27182743 27182895 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27182742;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143124-27143276%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27182743-27182895&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAHSPARCWQGRPPRLRTPCQPPLCC*CGCCRRRPRRRWSCLGSFSRRGGCRCR None NA NA 25 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.705882352941 0.83950617284 -5.56628823529 0.9438 -4.24105294118 -1.32523529412 -0.119621964938 0.217624149703 73782 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -29.317827451 0.8839 -22.7993176471 -6.51850980392 0.0325095913434 0.221657016644 23005 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222726.3,ENST00000467897.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 15435 584392 chr8:64377213-64377350+ NoOverlap chr8 64377213 64377350 + 2.80428699242 46 0.813305867094 0.376269567272 2.42801742515 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;64377212;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64377213-64377350%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A64377213-64377350&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.263934386935 0.200364827441 0.724056064894 65289770 65289907 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;65289769;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64377213-64377350%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A65289770-65289907&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLGANICLTGDVSSPCNPLVLKADALFVWLERAINP*FWISKRGGKTGPLRPTPSLPPPPTLK Same 585323 chr8:64377213-64377350+ 15521 15521 -86 11 10245 64377213 64379240 Best 15435 15435;24437 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:64377213-64379240&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.528985507246 0.525914634146 0.177882608696 0.9925 -0.95095 1.1288326087 0.119867871677 0.525151433486 13959 Best 13959 13959;44232 -4.26608913043 0.857 -5.50665869565 1.24056956522 0.0594572342858 0.537241590582 16936 Best 16936 16936;69566 0.0 0.0 ENST00000524060.1,ENST00000520799.5 NC,NCintron not annotated potentially spurious 15461 645376 chr16:3147312-3147338+ Extension chr16 3147312 3147338 + 11.2735554377 9 0.756099794003 5.92062218984 5.35293324788 chr16:3147312-3147419+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3147311;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3147312-3147338%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3147312-3147338&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.242707208188 0.200047391838 0.645191203836 3197313 3197339 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3197312;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3147312-3147338%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3197313-3197339&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPVSCALVALMAHGGPR None NA NA 0 256 3144015 3150751 334 334;814;1899;3328;3506;5705;11798;14824;15461;50287;55094 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3144015-3150751&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.0 18.2311555556 0.9965 5.20976666667 13.0213888889 0.765533058963 0.948160693989 1809 167 167;1186;1262;1661;1809;1880;2134;2541;2601;5815;43459 -0.9957 0.5989 -7.96623333333 6.97053333333 0.00772843535886 0.592933967234 31726 1889 1889;2882;2930;3314;3490;3499;6163;6623;16490;31726;59008 0.0 0.131372965413 chr7:101031601-101043819+ ENST00000428155.1,ENST00000576807.1 Extension5p,NC pseudogene extension CASP16P pseudogene extended (ENSG00000228146) 15490 486195 chr11:117355178-117355243+ NoOverlap chr11 117355178 117355243 + 3.28561819683 22 0.893468445036 -2.52280000123 5.80841819807 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;117355177;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117355178-117355243%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A117355178-117355243&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0497258838283 0.199765716389 0.950358083328 117225894 117225959 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;117225893;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117355178-117355243%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A117225894-117225959&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQPSQIHQVFADMEKILGRAPAQCRRELGDQQGLEK Same 488154 chr11:117355178-117355243+ 15879 15879 -389 0 347 117354932 117356374 476 476;2729;7100;15490;19164;22431 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:117354932-117356374&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.530303030303 0.0 2.57590454545 0.9792 -10.5508636364 13.1267681818 0.546063741177 1.07806604226 2829 650 650;1071;2341;2829;3370;5930 -0.202663636364 0.5413 -16.3879090909 16.1852454545 0.400423360428 1.01227992774 3958 1307 1307;2765;2996;3723;3958;5242 0.0 0.0 ENST00000278935.7 CDSintron coding exon(s) CEP164 cassette exon 15526 475833 chr1:214016896-214016931- NoOverlap chr1 214016896 214016931 - 5.85350833337 12 0.797713689886 -2.4074917535 8.26100008686 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;214016895;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214016896-214016931-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A214016896-214016931&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0743093592512 0.199421979853 1.01818001506 214190239 214190274 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214190238;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214016896-214016931-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214190239-214190274&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VDLTVLECNPMTKKTQGAK Same 477723 chr1:214016896-214016931- 15253 15253 273 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.0 2.392725 0.9793 -6.89404166667 9.28676666667 0.160108794488 0.953930052479 10889 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -1.96020833333 0.6688 -13.33305 11.3728416667 0.0960554862332 0.791533740353 11909 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000261454.8 AntiCDSintron not annotated potentially spurious 15578 518112 chr17:48626275-48626385+ NoOverlap chr17 48626275 48626385 + 3.73211885385 37 0.722707280409 1.701259401 2.03085945285 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48626274;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626275-48626385%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48626275-48626385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.338100362576 0.198772215672 0.630157285185 46703637 46703747 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46703636;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626275-48626385%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46703637-46703747&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WTFSDIIRALAGGREALARRRPSRERWHPDRCEGFRTRPPQPPTLPPPPPAQLLSQQSTVEQPVSALLAK Same 519513 chr17:48626275-48626385+ 16419 16419 -841 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.720720720721 0.9226342711 1.05821621622 0.9222 -1.40579189189 2.46400810811 0.145465800893 0.632626516137 11877 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -6.92226216216 0.5826 -7.06509459459 0.142832432432 -0.0249987508503 0.458475424052 52501 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000311177.6,ENST00000567101.2 AntiUTR5,AntiNCintron not annotated putative regulatory region 15583 479942 chr10:8060192-8060257- NoOverlap chr10 8060192 8060257 - 4.922954581 22 0.827951060155 2.58477285775 2.33818172325 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8060191;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8060192-8060257-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8060192-8060257&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.370510197477 0.198702053447 0.553584066523 8102155 8102220 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8102154;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8060192-8060257-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8102155-8102220&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGFFCQPNRIRTLLKFLAQDKQCNCRVQQSENNWIS Same 481850 chr10:8060192-8060257- 15316 15316 267 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.977777777778 1.04183181818 0.9997 -2.84689090909 3.88872272727 0.140209971489 0.66781206491 12266 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -4.66910454545 0.8362 -8.23585454545 3.56675 0.0156648985967 0.544480993257 28486 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 ENST00000346208.3,ENST00000461472.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 15600 577678 chr7:27147820-27147990+ NoOverlap chr7 27147820 27147990 + 3.15695090043 57 0.783129678931 1.719236891 1.43771400943 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27147819;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147820-27147990%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27147820-27147990&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.387012642795 0.198427174055 0.624329241001 27187439 27187609 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27187438;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147820-27147990%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27187439-27187609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TVICCVLVHLAITISSHRTGLFLDGRTPKATAANRTS*RGGGQWERTPEPAPRGPRRPRQQSYKQPPARPPAARPAD Same 578717 chr7:27147820-27147990+ 15986 15986 -386 21 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.695906432749 1.12051282051 -0.725998245614 0.9311 -1.85514035088 1.12914210526 0.0689971848933 0.520809356866 19834 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -12.2358280702 0.7623 -10.036977193 -2.19885087719 -0.0667218269171 0.380118074119 73675 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NCintron,AntiNCintron not annotated putative regulatory region 15625 483263 chr11:1105855-1105893+ NoOverlap chr11 1105855 1105893 + 8.33703846198 13 0.513694972152 2.14011538029 6.19692308169 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1105854;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1105855-1105893%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1105855-1105893&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.151725229905 0.198136522211 0.868019060594 1099763 1099801 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1099762;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1105855-1105893%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1099763-1099801&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLLTQLVSSLFLGCVGPDNVPREVGPTVLLGDPSTNSEFWGVR Same 485193 chr11:1105855-1105893+ 16531 16531 -906 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.615384615385 0.0 18.6290692308 0.8762 6.94684615385 11.6822230769 0.607920596536 0.950654003919 2500 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 22.7548538462 0.5396 7.82271538462 14.9321384615 0.701262087456 0.844685388199 2805 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.109041758097 chr14:74946733-74946948- ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 15627 636684 chr14:75281425-75281454+ Extension chr14 75281425 75281454 + 5.76651018858 10 0.855307850767 -3.80859999657 9.57511018515 chr14:75280783-75281454+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;75281424;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75281425-75281454%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A75281425-75281454&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0392093434147 0.198108280096 1.04268630786 75748128 75748157 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;75748127;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75281425-75281454%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A75748128-75748157&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGREGEAAGTHK Same 637331 chr14:75281425-75281454+ 14851 14851 776 0 456 75277155 75281681 653 653;2707;13175;15627;32302;36623;37128;61784;65414 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:75277155-75281681&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 0.252100840336 10.1291 0.9551 -1.286 11.4151 0.423568337459 0.99362891484 3768 Best 3768 3768;6703;12830;13388;17137;39238;49903;64236;73058 0.95879 0.6157 -5.32493 6.28372 0.0401128700679 0.574133918068 21009 9152 9152;14942;21009;33752;35396;56305;59433;66250;68586 0.0 0.0 ENST00000303562.8 Extension3p not annotated putative regulatory region 15674 491084 chr12:40419182-40419217+ NoOverlap chr12 40419182 40419217 + 7.4711667498 12 0.79175377025 1.54201668501 5.92915006479 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;40419181;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40419182-40419217%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A40419182-40419217&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.231341249722 0.197523059149 0.844779380964 40812984 40813019 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;40812983;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A40419182-40419217%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A40812984-40813019&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSHIPEATPKYSETNAIIGK Same 493061 chr12:40419182-40419217+ 15192 15192 482 0 149 40419182 40446630 178 178;203;208;213;268;288;318;343;350;355;406;408;434;440;501;615;754;764;847;888;1033;1317;1588;1724;1779;2875;5908;6513;15674 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:40419182-40446630&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.0 11.278625 0.9584 -1.243325 12.52195 0.569600913528 1.02431326867 2719 229 229;245;269;277;299;319;356;368;369;558;587;619;638;744;812;820;837;930;1025;1034;1120;1191;1281;1553;1632;2215;2529;2719;2772 14.2944833333 0.3714 0.693566666667 13.6009166667 0.330476119541 0.833261201174 4353 26 26;140;220;271;337;518;644;652;691;1143;1249;1272;1360;1472;1498;1614;1637;1660;1753;1776;2017;2653;2943;2948;3131;3412;3459;3809;4353 0.0 0.0 ENST00000454784.8,ENST00000552757.1 NC,AntiNCintron redundant PhyloCSF signals are accounted for elsewhere on the list 15695 560449 chr4:157365916-157365960+ NoOverlap chr4 157365916 157365960 + 3.8965265274 15 0.962668294296 -4.12225329677 8.01877982418 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;157365915;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157365916-157365960%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A157365916-157365960&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.100861819456 0.197271019947 1.02968543929 158287068 158287112 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;158287067;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157365916-157365960%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A158287068-158287112&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TYTFYNFY*RYWNFQFFMCTMSENAFDFIFK Same 561433 chr4:157365916-157365960+ 18438 18438 -2743 6 430 157360983 157365960 611 611;15695;15785;16090;17171;20574;21787;68912;71132 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:157360983-157365960&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.244444444444 0.0 -1.01027333333 0.9963 -8.05585333333 7.04558 0.0615489295826 0.846915504535 21003 3893 3893;6182;6226;10710;11582;13344;21003;56071;56585 -11.3945933333 0.5753 -22.3528933333 10.9583 0.00574661195871 0.741536776121 32592 3522 3522;3805;7560;13336;15714;28221;29180;32592;39824 0.0 0.0 ENST00000296526.11 UTR3 coding exon(s) GRIA2 alternative final exon 15741 549699 chr22:26672136-26672180- NoOverlap chr22 26672136 26672180 - 5.96294003328 15 0.745288268355 0.355906649431 5.60703338385 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;26672135;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A26672136-26672180-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A26672136-26672180&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.204114798357 0.196569507471 0.863621355265 27068099 27068143 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;27068098;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A26672136-26672180-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A27068099-27068143&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VRAQHQRTGHLSRHTQESLR Same 551039 chr22:26672136-26672180- 15783 15783 -42 0 10407 26672136 26672180 Best 15741 15741 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:26672136-26672180&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.622222222222 0.234375 0.0125666666667 0.9123 -12.8830933333 12.89566 0.212844656827 1.0655656316 8279 Best 8279 8279 -1.91858666667 0.3659 -15.6096933333 13.6911066667 0.131316978538 0.895984676837 9050 Best 9050 9050 0.0 0.0 ENST00000382641.1,ENST00000613780.4 NC,AntiNC not annotated potentially spurious 15770 527006 chr19:6414855-6414923+ NoOverlap chr19 6414855 6414923 + 4.36117390187 23 0.733821622034 0.597521784513 3.76365211736 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;6414854;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6414855-6414923%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A6414855-6414923&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.237334882209 0.196241434065 0.749470482043 6414866 6414934 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;6414865;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6414855-6414923%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A6414866-6414934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPSSSEVPPASLSAPQHHDSGTQEQAAGAGRPLR Same 528452 chr19:6414855-6414923+ 16060 16060 -290 0 18 6396383 6424885 18 18;152;1552;1681;2470;11355;12316;12885;15770;20124;36825 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:6396383-6424885&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.68115942029 0.907894736842 -1.74594347826 0.8935 -2.61705652174 0.871113043478 -0.0417753059625 0.394822159703 67562 228 228;1347;1830;2200;3049;3131;9882;24431;37923;50538;67562 -5.62834347826 0.442 -5.69762608696 0.0692826086957 -0.0333690328046 0.401740783518 60088 237 237;2087;2298;2594;2633;2795;14442;22727;50962;60088;60354 0.0 0.097263534136 chr16:67660122-67660478- ENST00000594496.5,ENST00000398148.7 AntiUTR3,AntiCDSintron pseudogene unitary pseudogene ENSG00000214347 15779 512283 chr16:72425643-72425732+ NoOverlap chr16 72425643 72425732 + 3.16171667576 30 0.916653187864 -0.444880032539 3.6065967083 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72425642;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425643-72425732%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72425643-72425732&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.204518727243 0.19615078621 0.788135772873 72459542 72459631 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72459541;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425643-72425732%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72459542-72459631&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QATLPQQLLALLRAFPVPLHQCEKQSVPSGWRLYPVGKVNCNSSAFK Same 513927 chr16:72425643-72425732+ 16007 16007 -228 0 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.577777777778 0.533333333333 -2.41878333333 0.9965 -5.74609 3.32730666667 0.0137169771241 0.641636546914 35220 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -12.5338333333 0.7761 -19.9292166667 7.39538333333 0.00331232792757 0.690375757737 33741 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000561611.2,ENST00000624829.3 AntiNC,AntiNCintron not annotated potentially spurious 15782 522923 chr17:67993425-67993478- NoOverlap chr17 67993425 67993478 - 7.43091663635 18 0.509528411451 4.26809990406 3.16281673229 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;67993424;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A67993425-67993478-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A67993425-67993478&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.220029095764 0.196132188122 0.600916807029 65989541 65989594 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;65989540;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A67993425-67993478-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A65989541-65989594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DAEPGAEPCARACRSDLDEREAFCESEFGEPGR Same 524358 chr17:67993425-67993478- 16630 16630 -848 0 538 67993147 67996207 816 816;971;14397;15782;34535 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:67993147-67996207&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.67182662539 9.98761111111 0.8196 5.85803333333 4.12957777778 0.34393152618 0.634648257198 4772 535 535;740;4772;6794;48625 12.67325 0.4812 7.2023 5.47095 0.344963687947 0.586665924606 4259 946 946;1766;4259;11308;63387 0.0 0.196068790495 chr16:582883-583634+ ENST00000334461.7 UTR5 coding exon(s) C17orf58 alternative 5' extension 15785 560436 chr4:157361189-157361215+ NoOverlap chr4 157361189 157361215 + 9.36510001289 9 0.869277654858 1.48274442885 7.88235558404 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;157361188;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157361189-157361215%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A157361189-157361215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.192488120442 0.196037469588 0.930717841069 158282341 158282367 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;158282340;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157361189-157361215%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A158282341-158282367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSSSYAQCGHSVPPSFQR Same 561420 chr4:157361189-157361215+ 14498 14498 1287 0 430 157360983 157365960 611 611;15695;15785;16090;17171;20574;21787;68912;71132 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:157360983-157365960&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.375 6.41736666667 0.9056 -4.31577777778 10.7331444444 0.163159819191 0.979452273595 10710 3893 3893;6182;6226;10710;11582;13344;21003;56071;56585 0.422711111111 0.6325 -15.4786333333 15.9013444444 0.160196050158 0.916339761544 7560 3522 3522;3805;7560;13336;15714;28221;29180;32592;39824 0.0 0.0 ENST00000264426.13,ENST00000323661.10 CDSintron,NCintron coding exon(s) GRIA2 alternative final exon 15805 508738 chr15:45201172-45201222- NoOverlap chr15 45201172 45201222 - 5.28856455403 17 0.741728488145 0.0743116263081 5.21425292772 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;45201171;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45201172-45201222-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A45201172-45201222&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.198639560867 0.195847660401 0.849811640395 45493370 45493420 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;45493369;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45201172-45201222-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A45493370-45493420&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EALAVPLFPQCRDSDSNRGCCGHNAEY Same 510462 chr15:45201172-45201222- 15911 15911 -106 0 1111 45198578 45201222 1685 1685;3658;6770;7314;14365;15805;20741;57385 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:45198578-45201222&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.607843137255 1.275 0.840488235294 0.9934 -1.66702941176 2.50751764706 0.0446350009465 0.503265427324 24393 5595 5595;8787;14727;17218;22093;24393;42532;65917 0.840788235294 0.3498 -1.6681 2.50888823529 0.0167344001215 0.475097761248 28123 8460 8460;15084;16682;28123;29490;30928;42026;53935 0.0 0.0 ENST00000290894.12 UTR5 not annotated 3 tRNAs 15807 515943 chr17:2400001-2400075+ NoOverlap chr17 2400001 2400075 + 4.26109209061 25 0.881237201495 1.80879211187 2.45229997873 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2400000;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400001-2400075%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2400001-2400075&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.348387165183 0.195820977156 0.599686407704 2303295 2303369 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2303294;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400001-2400075%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2303295-2303369&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPAQLWEAGSGGAGQDHKTRDVISFCKGRLRPKRRVDLPGAPPAPSPR Same 517319 chr17:2400001-2400075+ 15625 15625 182 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.586666666667 1.09375 -1.173948 0.9374 -2.998324 1.824376 -0.010221667634 0.492975485164 47267 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -7.242088 0.4533 -9.1387 1.896612 -0.0287359180489 0.48100528308 55977 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.089138866693 chr15:60004964-60005941+ ENST00000174618.4,ENST00000574559.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 15809 578353 chr7:73743038-73743100+ NoOverlap chr7 73743038 73743100 + 3.8477761788 21 0.870816394002 -1.29805242873 5.14582860754 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;73743037;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A73743038-73743100%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A73743038-73743100&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.144433200159 0.195801604773 0.885015012479 73157368 73157430 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;73157367;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A73743038-73743100%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A73157368-73157430&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHLAQYRSRGQGFTCPAEQGQSGCLFCGR Same 579394 chr7:73743038-73743100+ 15710 15710 99 0 117 73735456 73743100 140 140;963;2258;15809 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:73735456-73743100&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.634920634921 0.477272727273 2.11483809524 0.9818 -8.14218571429 10.2570238095 0.399663077625 1.04989573635 4016 284 284;1112;1678;4016 -1.53183333333 0.4656 -10.0210619048 8.48922857143 0.139518187816 0.751421759128 8559 136 136;2383;2522;8559 0.0 0.0 pseudogene unitary pseudogene ENSG00000225969 15824 539905 chr2:111429594-111429623- NoOverlap chr2 111429594 111429623 - 8.05576999187 10 0.771071946288 -0.558110001683 8.61387999356 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;111429593;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A111429594-111429623-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A111429594-111429623&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.150691952521 0.195593528402 1.00114687659 112187171 112187200 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;112187170;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A111429594-111429623-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A112187171-112187200&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATVSVVGSDLCFSCMFLFQNNWEMKQEAL Same 541266 chr2:111429594-111429623- 16084 16084 -260 0 10451 111429594 111429623 Best 15824 15824 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:111429594-111429623&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.433333333333 0.0 5.59086 0.9962 -4.28622 9.87708 0.266526210516 0.957782252159 6448 Best 6448 6448 2.93562 0.428 -9.65156 12.58718 0.11019444059 0.817926097686 10620 Best 10620 10620 0.0 0.0 ENST00000603827.1,ENST00000431385.5 NC,NCintron not annotated potentially spurious 15825 549349 chr22:50705497-50705532+ NoOverlap chr22 50705497 50705532 + 6.32690827052 12 0.815716792554 -1.20713309447 7.53404136499 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50705496;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50705497-50705532%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50705497-50705532&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.131669603923 0.195578832964 0.981098843792 51143925 51143960 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51143924;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50705497-50705532%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51143925-51143960&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RHLREEEKRLLPATTR Same 550705 chr22:50705497-50705532+ 15333 15333 492 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.595041322314 3.36436666667 0.9367 -5.53029166667 8.89465833333 0.15254018198 0.934550942237 11392 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 0.945741666667 0.5242 -11.099425 12.0451666667 0.144569942771 0.818301299949 8264 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.0 ENST00000262795.5 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 15827 539877 chr2:110399832-110399888- NoOverlap chr2 110399832 110399888 - 6.20824738788 19 0.343181827308 -1.48915785865 7.69740524653 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110399831;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110399832-110399888-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110399832-110399888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0302963062247 0.195553326065 1.02821495947 111157409 111157465 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111157408;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110399832-110399888-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111157409-111157465&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ICRAFQSLQNTLPNILYVFYCSCSVC Same 541237 chr2:110399832-110399888- 16009 16009 -182 0 1194 110397399 110408025 1806 1806;2085;2438;3107;4591;8217;15827;15899 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110397399-110408025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.508771929825 0.0 19.3034789474 0.779 2.33938947368 16.9640894737 0.713559978303 1.01759382846 2030 48 48;279;480;726;1001;1821;1905;2030 52.1295578947 0.805 11.4410421053 40.6885157895 1.0137445596 1.02233733903 877 350 350;364;877;881;1131;1304;1506;1758 0.0 0.0 ENST00000488671.1 NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000184115) 15830 577731 chr7:27185432-27185509+ NoOverlap chr7 27185432 27185509 + 4.42925009361 26 0.846549993838 2.69088471394 1.73836537966 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27185431;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27185432-27185509%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27185432-27185509&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.401235062572 0.195525797335 0.510832589978 27225051 27225128 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27225050;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27185432-27185509%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27225051-27225128&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPFFVATSGEATDRHSVFSPKARNRRCNSCWLGGLPARAER Same 578770 chr7:27185432-27185509+ 15739 15739 91 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.653846153846 1.32 0.61505 0.9756 -2.00791538462 2.62296538462 0.0970184998666 0.582326951283 16188 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -2.17625384615 0.5372 -4.66814230769 2.49188846154 0.0487396192418 0.528310654622 18984 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000522674.1,ENST00000520360.5 NC,NCintron not annotated putative regulatory region 15880 500672 chr14:21869326-21869364+ NoOverlap chr14 21869326 21869364 + 6.95103072662 13 0.769442047995 1.29123063758 5.65980008904 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21869325;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21869326-21869364%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21869326-21869364&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.227452005093 0.19494796291 0.837179675817 22337507 22337545 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22337506;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21869326-21869364%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22337507-22337545&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFSLHITETQPEDSAVYFCAASTHCFPGTCYPYTNLR None NA NA 0 130 21846938 21869364 157 157;319;1640;6119;15880;30074 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21846938-21869364&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.512820512821 0.393939393939 8.38493846154 0.9155 -0.421438461538 8.80637692308 0.356837137924 0.925239590065 4576 19 19;1154;2028;2765;4576;5725 11.0898615385 0.3814 -0.247507692308 11.3373692308 0.274707952462 0.777707417211 4897 746 746;1536;2871;3379;4344;4897 0.0 0.0 ENST00000390436.2 NC immunoglobulin segment overlaps an immunoglobulin region 15899 539876 chr2:110399770-110399829- NoOverlap chr2 110399770 110399829 - 5.57123993784 20 0.378773937591 -1.53285503387 7.10409497172 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110399769;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110399770-110399829-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110399770-110399829&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.034221288343 0.194661866798 1.01063794453 111157347 111157406 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111157346;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110399770-110399829-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111157347-111157406&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFVSIDLQGFPKPPEHPAQYPLCLLLFMFSVLMFCLMALKLFGNR Same 541236 chr2:110399770-110399829- 15841 15841 58 0 1194 110397399 110408025 1806 1806;2085;2438;3107;4591;8217;15827;15899 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110397399-110408025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.45 0.352941176471 18.394595 0.7788 -3.265585 21.66018 0.743859988548 0.969099829342 1905 48 48;279;480;726;1001;1821;1905;2030 41.690185 0.8043 -4.96724 46.657425 1.04757218229 0.977703993201 364 350 350;364;877;881;1131;1304;1506;1758 0.0 0.0 ENST00000488671.1 NCintron pseudogene two-pore calcium channel 3 (TPCN3) pseudogene (ENSG00000184115) 15940 530970 chr19:35789038-35789073- NoOverlap chr19 35789038 35789073 - 6.37912503878 12 0.814324406806 -1.06859998157 7.44772502035 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35789037;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35789038-35789073-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35789038-35789073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.136826597677 0.194077688027 0.975714997429 36279940 36279975 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36279939;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35789038-35789073-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36279940-36279975&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MDLLEEIIAELQK Same 532437 chr19:35789038-35789073- 15454 15454 486 0 212 35784826 35806955 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.0 8.69089166667 0.9359 -7.05465 15.7455416667 0.482116713844 1.02987007787 3259 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 2.40783333333 0.3958 -11.0850083333 13.4928416667 0.146065416632 0.867110685828 8191 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.0549914639579 chr12:56433026-56433127- ENST00000433059.1 NC pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 15950 476950 chr10:23173292-23173363+ NoOverlap chr10 23173292 23173363 + 2.56797495236 24 0.828254622212 -3.56798319022 6.13595814258 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;23173291;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23173292-23173363%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A23173292-23173363&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0582376493832 0.193978906838 0.985955887675 23462221 23462292 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;23462220;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23173292-23173363%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A23462221-23462292&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAHPLPTASSTSGDIPMERPRRSLPHSAR Same 478845 chr10:23173292-23173363+ 16038 16038 -88 0 873 23173215 23174753 1346 1346;12304;15950;27589;28990;57664;61491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:23173215-23174753&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.708333333333 0.914285714286 -2.58350833333 0.9589 -8.38602916667 5.80252083333 0.0461788871283 0.811520184019 24016 13233 13233;19886;24016;28278;48646;49514;73112 -6.69845833333 0.592 -11.6959291667 4.99747083333 0.0205889787179 0.607892343893 26780 17548 17548;26780;29885;33897;60100;60114;62222 0.0 0.056786089199 chr20:59191020-59194757+ not annotated putative regulatory region 15956 494106 chr12:3303870-3303908- NoOverlap chr12 3303870 3303908 - 7.15580013967 13 0.544865632574 -1.02536922464 8.18116936431 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3303869;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3303870-3303908-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3303870-3303908&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.103326460156 0.193908554385 1.01192579594 3413036 3413074 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3413035;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3303870-3303908-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3413036-3413074&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSDWQRSTYLLSWEVR Same 496101 chr12:3303870-3303908- 16669 16669 -713 0 531 3298233 3307795 799 799;1890;3339;6900;15956;21198;23499 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3298233-3307795&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.73125 15.3249615385 0.9951 -1.50680769231 16.8317692308 0.838316720775 1.01568636499 1520 197 197;419;1376;1520;1852;2555;9275 26.4659461538 0.7561 -0.266307692308 26.7322538462 0.994228902146 1.04072421809 1207 223 223;711;903;924;1207;1939;10886 1.03662368928 chr12:30982532-30982690+ 0.989060325195 chr12:30982532-30982690+ pseudogene tetraspanin 11 (TSPAN11) pseudogene (ENSG00000250770); single locus on multiple rows 15978 572456 chr6:108165947-108166069+ NoOverlap chr6 108165947 108166069 + 2.94368536298 41 0.838370113159 0.560880450214 2.38280491276 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108165946;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108165947-108166069%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108165947-108166069&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.279702429532 0.193556634886 0.697639795748 108487151 108487273 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108487150;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108165947-108166069%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108487151-108487273&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLTPSLFPSPPRTWLTSDPARSWGKS*VGQGRPIPLPAAACQSASGDITGDPAR Same 573483 chr6:108165947-108166069+ 15948 15948 30 19 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.634146341463 0.572093023256 0.10676097561 0.9897 -1.61637560976 1.72313658537 0.119513519822 0.567966256736 13992 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 -6.56653658537 0.5586 -5.36735609756 -1.1991804878 -0.0327656693643 0.414719944396 59593 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000368986.8 UTR5 not annotated putative regulatory region 16090 560445 chr4:157363519-157363572+ NoOverlap chr4 157363519 157363572 + 3.98311676582 18 0.922674058815 -2.38410551349 6.36722227931 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;157363518;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157363519-157363572%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A157363519-157363572&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0555453774687 0.192110396169 0.96292069832 158284671 158284724 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;158284670;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157363519-157363572%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A158284671-158284724&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VMTPEFPKAVHAVPYVSPGMGMNVSVTDLS Same 561429 chr4:157363519-157363572+ 17094 17094 -1004 0 430 157360983 157365960 611 611;15695;15785;16090;17171;20574;21787;68912;71132 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:157360983-157365960&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.276923076923 1.30953888889 0.9864 -3.60718888889 4.91672777778 0.127029918017 0.721537660342 13344 3893 3893;6182;6226;10710;11582;13344;21003;56071;56585 11.9183277778 0.9737 -0.272816666667 12.1911444444 0.503413249595 0.845471923338 3522 Best 3522 3522;3805;7560;13336;15714;28221;29180;32592;39824 0.0 0.196468812909 chr11:105979575-105979739+ ENST00000264426.13,ENST00000471736.5 UTR3,NC coding exon(s) GRIA2 alternative final exon 16115 540152 chr2:131379743-131379817- NoOverlap chr2 131379743 131379817 - 4.2672200346 25 0.321293965057 -3.67382394265 7.94104397725 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131379742;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131379743-131379817-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131379743-131379817&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00500535025741 0.191775493463 1.056707888 132137316 132137390 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;132137315;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131379743-131379817-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A132137316-132137390&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NHPTATLTMSPSNNLTLIISTSLMLVIILILGLPYE*TQKGLD*TELVSSLSQNK Same 541514 chr2:131379743-131379817- 15336 15336 779 9 643 131370351 131386316 988 988;1634;5892;16115;21323;24702;26053;30266;32713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131370351-131386316&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.0 10.86328 0.6545 -14.035184 24.898464 0.756054394915 0.995173305994 1841 1235 1235;1643;1841;2007;2369;2922;4039;4272;46168 39.53078 0.8812 -20.346376 59.877156 0.984136423256 1.01476613643 1359 939 939;1359;1734;1945;2052;2301;2444;3194;23136 0.945905574055 chrM:10059-10404+ 0.976922081566 chrM:10059-10404+ pseudogene extension mitochondrial pseudogene region extended (e.g. ENSG00000284003) 16204 579664 chr7:142381149-142381178+ NoOverlap chr7 142381149 142381178 + 9.49776979685 10 0.634970626383 1.26365996599 8.23410983086 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142381148;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142381149-142381178%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142381149-142381178&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.176477546566 0.190544518825 0.959643491261 142250815 142250786 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142250814;-28;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142381149-142381178%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142250815-142250786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEVPDGYSVSR None NA NA 0 362 142381077 142408131 503 503;2671;2771;4607;6492;14294;16204;21550;22314 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142381077-142408131&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.0 11.71334 0.9173 -6.40356 18.1169 0.476129055311 1.00167754808 3300 2259 2259;2284;2682;2903;3300;3654;22326;44473;52081 11.01587 0.4689 -20.84442 31.86029 0.475677444164 1.03269527411 3635 2619 2619;2643;2937;3046;3257;3635;4345;4428;8592 0.0 0.0 ENST00000390360.3 NC immunoglobulin segment overlaps an immunoglobulin region 16285 476439 chr1:244048122-244048250- NoOverlap chr1 244048122 244048250 - 3.16390926651 43 0.687428872553 0.677346534507 2.486562732 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244048121;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048122-244048250-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244048122-244048250&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.229607915301 0.189674311315 0.720697444383 244211424 244211552 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244211423;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048122-244048250-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244211424-244211552&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEAARGGVLGRSGGGSSGAPLGDLAVRK*KEPAGGGDSCAGRGLFPGSEAPR Same 478333 chr1:244048122-244048250- 17465 17465 -1180 18 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.728682170543 0.864942528736 0.421274418605 0.8742 -0.203130232558 0.624404651163 0.0455025529446 0.472701667142 24171 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -8.74180232558 0.5755 -14.0778906977 5.33608837209 0.0429666633683 0.686588623834 20268 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0580603500794 chr16:31466079-31466889+ not annotated putative regulatory region 16302 500756 chr14:22520424-22520459+ NoOverlap chr14 22520424 22520459 + 6.96875831485 12 0.98954248366 0.636125038067 6.33263327678 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22520423;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22520424-22520459%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22520424-22520459&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.183012765427 0.189538568274 0.888487731654 22989402 22989437 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22989401;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22520424-22520459%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22989402-22989437&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSVIYNQGGKLIFGQGTELSVKPSK None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.857142857143 7.01784166667 0.9787 -1.52865 8.54649166667 0.344316815693 0.90769699234 4765 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 7.33345 0.3818 -4.5914 11.92485 0.193982726855 0.802857335005 6416 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390514.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 16322 512435 chr16:75434355-75434393+ NoOverlap chr16 75434355 75434393 + 7.93753838539 13 0.466618542059 0.122969164298 7.81456922109 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;75434354;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A75434355-75434393%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A75434355-75434393&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0955845601419 0.189311582794 0.987757531333 75468253 75468291 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;75468252;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A75434355-75434393%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A75468253-75468291&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DICGHVTQSQRNAKPFSASAGR Same 514079 chr16:75434355-75434393+ 16767 16767 -445 0 10710 75434051 75434393 Best 16322 16322;19512;68618 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:75434051-75434393&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.538461538462 0.709090909091 10.1577307692 0.5674 -2.17958461538 12.3373153846 0.268838435343 1.0310212413 6381 Best 6381 6381;8027;17844 10.1577307692 0.1774 -2.17958461538 12.3373153846 0.13576583648 0.816675321996 8776 Best 8776 8776;10537;17082 0.0 0.0 ENST00000621929.1,ENST00000566594.1,ENST00000561887.1 NC,AntiCDSintron,AntiNCintron not annotated potentially spurious 16402 535534 chr2:159396918-159396992+ NoOverlap chr2 159396918 159396992 + 4.27223603129 25 0.853283283742 1.93383999586 2.33839603543 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;159396917;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159396918-159396992%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A159396918-159396992&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.346189779848 0.188254848749 0.584374902941 160253429 160253503 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;160253428;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159396918-159396992%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A160253429-160253503&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TDKQMYAMHCAVKPCSSM*YDSSQCYTLCIAMTTISQPNHNAVLDVQK Same 536895 chr2:159396918-159396992+ 16224 16224 178 7 10752 159396069 159397027 Best 16402 16402;27175;69754 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:159396069-159397027&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.0 -0.934172 0.9994 -0.656952 -0.27722 -0.0224105475332 0.310880996302 55784 31372 31372;37922;55784 -6.634004 0.9861 -7.958468 1.324464 -0.0122011605906 0.459967520904 42310 38148 38148;42310;66741 0.0 0.0 ENST00000420020.5,ENST00000294905.4,ENST00000551504.5 NCintron,AntiCDSintron,AntiNCintron not annotated potentially spurious 16413 538851 chr2:62091304-62091363- NoOverlap chr2 62091304 62091363 - 5.21932003796 20 0.386368352789 -2.14686001949 7.36618005745 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62091303;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62091304-62091363-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62091304-62091363&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0270954730408 0.188102530691 1.0235143578 62318439 62318498 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62318438;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62091304-62091363-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62318439-62318498&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CDLTGGVGAGLGILGQAEFMTNEERHSLEK Same 540229 chr2:62091304-62091363- 16043 16043 370 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4 0.46875 0.13569 0.0432 -1.18404 1.31973 0.032725958928 0.420978032229 27716 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 0.13569 0.0135 -1.18404 1.31973 -0.0161939587704 0.445921922853 45212 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 16427 505555 chr14:102052637-102052690- NoOverlap chr14 102052637 102052690 - 5.09148897148 18 0.513533904699 -1.73326669799 6.82475566947 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;102052636;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A102052637-102052690-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A102052637-102052690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0623620901084 0.188028203876 0.987136266006 102518974 102519027 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;102518973;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A102052637-102052690-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A102518974-102519027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAEPFLTPMEPPETGRHVPSRARGAWPPPRFGR Same 507405 chr14:102052637-102052690- 16780 16780 -353 0 2437 102052554 102052995 3470 3470;16427;44225 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:102052554-102052995&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 0.397058823529 7.35736111111 0.8018 0.797355555556 6.56000555556 0.313575604607 0.840295502331 5325 1675 1675;5325;9569 6.12988888889 0.3843 -4.88666111111 11.01655 0.283930858513 0.822806999986 4802 3358 3358;4106;4802 0.0 0.0 ENST00000557242.1,ENST00000553701.1 NC,NCintron not annotated potentially spurious 16489 493949 chr12:132509946-132509972+ NoOverlap chr12 132509946 132509972 + 5.94695553515 9 0.749089121165 -5.36425590515 11.3112114403 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132509945;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509946-132509972%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132509946-132509972&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0828150764214 0.187292214949 1.03952746216 133086532 133086558 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;133086531;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509946-132509972%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A133086532-133086558&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFLAPCQYGQPRRSLLGQPSRPR Same 495940 chr12:132509946-132509972+ 16276 16276 213 0 98 132509173 132510440 116 116;202;637;794;2162;3860;16489;25303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132509173-132510440&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 0.272727272727 18.2601666667 0.9065 -4.82072222222 23.0808888889 0.528328523916 0.959957790865 2944 6 6;93;263;1110;1440;2944;5926;7480 0.0956222222222 0.6304 -16.2052666667 16.3008888889 0.159302966938 0.927492036937 7601 2003 2003;2026;2435;2663;4003;7601;8523;55779 0.0 0.177567676671 chr14:104927673-104927866+ ENST00000542061.2,ENST00000434748.2 NC,CDSintron coding exon(s) FBRSL1 alternative final coding exon 16499 487456 chr11:20277217-20277249- NoOverlap chr11 20277217 20277249 - 5.12760003047 11 0.995918905235 -3.78034539656 8.90794542703 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;20277216;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A20277217-20277249-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A20277217-20277249&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.10345480013 0.187184568228 1.03583062632 20298763 20298795 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;20298762;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A20277217-20277249-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A20298763-20298795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MERVMGQPAGDLTLINCLLVSDGAQEWAGGCR Same 489426 chr11:20277217-20277249- 19736 19736 -3237 0 743 20274456 20277249 1144 1144;16499;34687;35486;44462 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:20274456-20277249&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.636363636364 0.673469387755 -3.03837272727 0.9962 -6.5771 3.53872727273 -0.0475624067088 0.540351580221 70242 7832 7832;14487;49634;64437;70242 -6.85235454545 0.7692 -9.08563636364 2.23328181818 -0.0459944601816 0.406991384669 69341 8350 8350;41275;47988;61181;69341 0.0 0.0 not annotated putative regulatory region 16551 491698 chr12:53675846-53675878+ NoOverlap chr12 53675846 53675878 + 6.40901830115 11 0.979873350118 -1.4541636868 7.86318198795 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;53675845;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53675846-53675878%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A53675846-53675878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0694900479902 0.186590022264 0.990972300374 54069630 54069662 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;54069629;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53675846-53675878%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A54069630-54069662&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSSPCETSKMAPGPRGWR Same 493676 chr12:53675846-53675878+ 17809 17809 -1258 0 511 53675817 53677539 760 760;1200;7057;16551;24062;35589 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:53675817-53677539&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 1.0 1.12674545455 0.9549 -3.86687272727 4.99361818182 0.00478869199007 0.659403736917 39125 2429 2429;5561;6811;18771;39125;47754 0.772572727273 0.3349 -3.60320909091 4.37578181818 -0.00551795345723 0.504270925691 38314 4274 4274;6621;14008;15709;25359;38314 0.0 0.0 ENST00000338662.5,ENST00000549164.5 AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 16598 494065 chr12:2767965-2768021- NoOverlap chr12 2767965 2768021 - 4.13272104452 19 0.477985648488 -3.82884726713 7.96156831164 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;2767964;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2767965-2768021-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A2767965-2768021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0189150096594 0.186090609823 1.04237544989 2877131 2877187 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;2877130;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A2767965-2768021-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A2877131-2877187&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NTLKLLYAPHPIASLHPVIK Same 496059 chr12:2767965-2768021- 15882 15882 716 0 1350 2767965 2775661 2025 2025;14121;16598 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:2767965-2775661&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.543859649123 0.678571428571 5.56994736842 0.4696 -5.39693157895 10.9668789474 0.191908954426 1.04892221962 9143 Best 9143 9143;18587;21423 7.90133684211 0.242 -7.02397894737 14.9253157895 0.314270216964 0.948973540221 4488 Best 4488 4488;12570;18208 0.0 0.0 ENST00000536497.1,ENST00000540093.1 NC,NCintron pseudogene unitary pseudogene ENSG00000255669 16637 497417 chr12:122226504-122226563- NoOverlap chr12 122226504 122226563 - 5.15654493868 20 0.802059205005 2.39430993497 2.76223500371 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;122226503;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A122226504-122226563-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A122226504-122226563&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.3275707004 0.185705735633 0.588887203203 122711051 122711110 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;122711050;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A122226504-122226563-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A122711051-122711110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CRPRPPSTCCSCCGSCSPSCSSATR Same 499429 chr12:122226504-122226563- 16384 16384 253 0 223 122226015 122226567 279 279;8793;16637 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:122226015-122226567&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.716666666667 0.921052631579 -2.96847 0.9427 -2.90164 -0.06683 -0.057368675864 0.299998331514 72254 882 882;50874;72254 -22.471805 0.7587 -18.19958 -4.272225 0.0131023383456 0.151893549565 29503 1045 1045;29503;42979 0.0 0.0975432835407 chr3:196947157-196948685- ENST00000413918.5,ENST00000475784.1,ENST00000485724.1,ENST00000535844.1 UTR5,NC,UTR5intron,NCintron protein-coding gene protein-coding gene ENSG00000284934 16639 483258 chr11:1103972-1104007+ NoOverlap chr11 1103972 1104007 + 6.67945003013 12 0.608909997203 -2.55906665325 9.23851668338 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1103971;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1103972-1104007%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1103972-1104007&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0729629370281 0.185687076025 1.04054305156 1097880 1097915 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1097879;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1103972-1104007%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1097880-1097915&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DCTPSPLCQLIKDR Same 485188 chr11:1103972-1104007+ 17619 17619 -980 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.0 17.1722083333 0.8742 -0.509541666667 17.68175 0.586855634619 1.00410579613 2614 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 26.638475 0.8258 -9.02599166667 35.6644666667 1.00066944158 1.03001169796 1103 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.0550867786983 chr11:1255041-1255266+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 16714 490639 chr12:9566305-9566349+ NoOverlap chr12 9566305 9566349 + 6.21852669915 15 0.685925586837 0.792079782486 5.42644691666 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9566304;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9566305-9566349%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9566305-9566349&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.1900953576 0.184982905993 0.843580843188 9718901 9718945 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9718900;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9566305-9566349%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9718901-9718945&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSLDHCLCCSVQETAVCLLAITRYITR Same 492615 chr12:9566305-9566349+ 17266 17266 -552 0 598 9552442 9566349 921 921;2868;3582;16714 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9552442-9566349&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.459183673469 13.90858 0.8407 0.136913333333 13.7716666667 0.586999041258 1.03669355585 2612 1470 1470;2031;2243;2612 13.90858 0.2628 0.136913333333 13.7716666667 0.310416381139 0.865800323826 4527 1430 1430;2479;2486;4527 0.0 0.0 ENST00000518709.5 NCintron pseudo-exon AC092821.1 pseudo exons 16723 518003 chr17:48311217-48311264+ NoOverlap chr17 48311217 48311264 + 5.29423759412 16 0.959615091173 -0.0694686565548 5.36370625068 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48311216;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48311217-48311264%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48311217-48311264&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.188030784271 0.184890838737 0.855363860792 46388579 46388626 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46388578;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48311217-48311264%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46388579-46388626&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MEEHSAQVTDMELLIWV Same 519404 chr17:48311217-48311264+ 18250 18250 -1527 0 10925 48307328 48313286 Best 16723 16723;17599;22434;62115;67342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48307328-48313286&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.479166666667 0.4 -0.51 0.9995 -2.32804375 1.81804375 -0.00797473282324 0.433843911893 45878 9986 9986;10392;16724;44437;45878 -8.10608125 0.7176 -7.6209125 -0.48516875 -0.044543376181 0.332233461058 68455 16697 16697;17787;63179;68455;70554 0.0 0.0 ENST00000336915.10,ENST00000581400.2 AntiCDSintron,AntiNCintron not annotated potentially spurious 16747 564626 chr5:81851926-81852135+ NoOverlap chr5 81851926 81852135 + 3.90558137715 70 0.75163260635 3.98925999403 -0.083678616876 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;81851925;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A81851926-81852135%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A81851926-81852135&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.58616866187 0.184661974482 0.437838385839 81147745 81147954 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;81147744;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A81851926-81852135%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A81147745-81147954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SRSSTTVIPQLGRLETARAE*HLLFRPAAASRRGCRAPCKAALIIPEVVLTQSRCHQKFVNIKLLLCGVR Same 565614 chr5:81851926-81852135+ 16784 16784 -37 21 10939 81851608 81852135 Best 16747 16747;21219;69158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:81851608-81852135&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.585714285714 0.901771336554 0.66739 0.8845 0.795738571429 -0.128348571429 0.116253305323 0.420737414958 14281 Best 14281 14281;41058;41828 -1.36689571429 0.5583 -1.56252714286 0.195631428571 0.12391990569 0.516267114569 9556 Best 9556 9556;42118;64012 0.0 0.0 ENST00000512859.1 NC not annotated potentially spurious 16752 472838 chr1:70043885-70043935- NoOverlap chr1 70043885 70043935 - 4.41213526971 17 0.947375223836 -1.79223533238 6.20437060209 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;70043884;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A70043885-70043935-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A70043885-70043935&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0874301321049 0.18462703907 0.942444945128 70509568 70509618 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;70509567;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A70043885-70043935-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A70509568-70509618&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNNHVTGCEHMLNKLINYMNMFK Same 474717 chr1:70043885-70043935- 18410 18410 -1658 0 3 70039113 70043935 3 3;16752;69498 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:70039113-70043935&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.392156862745 0.0 -0.0129470588235 0.9729 -6.56892352941 6.55597647059 0.0982710462437 0.83415424101 16037 4066 4066;8099;16037 -11.3700470588 0.7655 -15.1602529412 3.79020588235 -0.0420543164862 0.484525966822 66705 11883 11883;14040;66705 0.0 0.0 ENST00000035383.9 AntiCDSintron not annotated potentially spurious 16771 494779 chr12:31005780-31005848- NoOverlap chr12 31005780 31005848 - 6.91753919909 23 0.401007095445 4.05170440674 2.86583479235 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;31005779;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A31005780-31005848-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A31005780-31005848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.148544301112 0.184403439502 0.622598553873 31158715 31158783 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;31158714;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A31005780-31005848-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A31158715-31158783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLPCVFQILGLAFSITITQHIHWTGKK*DVCVGWPECPHKPLPTPR Same 496776 chr12:31005780-31005848- 18140 18140 -1369 2 10951 31005780 31005848 Best 16771 16771 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:31005780-31005848&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.536231884058 0.205357142857 13.8970565217 0.9118 7.16209565217 6.73496086957 0.780973884887 0.86606767402 1751 Best 1751 1751 18.0747695652 0.3568 9.58647391304 8.48829565217 0.55388653268 0.728590236717 3333 Best 3333 3333 0.969709530926 chr12:3283045-3283116+ 0.975861953594 chr12:3283045-3283116+ ENST00000222396.9 NC pseudogene tetraspanin family pseuodgene (ENSG00000226472) 16789 584702 chr8:78649224-78649262+ NoOverlap chr8 78649224 78649262 + 5.9523461037 13 0.436568832861 -9.45611520914 15.4084613128 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78649223;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78649224-78649262%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78649224-78649262&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0063822908971 0.184265721589 0.948634331354 79561459 79561497 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79561458;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78649224-78649262%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79561459-79561497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGIPYNSTGQTIVER Same 585633 chr8:78649224-78649262+ 11949 11949 4840 0 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.410256410256 0.619047619048 0.0920307692308 0.0285 -2.50110769231 2.59313846154 0.0384859299124 0.475698296045 26017 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 18.2074307692 0.1627 0.908523076923 17.2989076923 0.254591542667 0.930461630564 5151 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 16805 539825 chr2:110024163-110024210- NoOverlap chr2 110024163 110024210 - 6.7811063081 16 0.45810826276 0.647762574255 6.13334373385 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110024162;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110024163-110024210-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110024163-110024210&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0902107390592 0.184132375258 0.912240678086 110781740 110781787 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110781739;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110024163-110024210-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110781740-110781787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCPHSAPGGYACPVSSSTYSGLGQR Same 541185 chr2:110024163-110024210- 17395 17395 -590 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.0 14.262175 0.761 6.75303125 7.50914375 0.459654127373 0.840860203344 3427 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 27.9427 0.5287 8.33785 19.60485 0.870946717662 0.961838457663 2232 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 16816 482197 chr10:113120036-113120113- NoOverlap chr10 113120036 113120113 - 3.84515006611 26 0.861741523907 0.897396248121 2.94775381799 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113120035;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113120036-113120113-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113120036-113120113&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.283343939271 0.183948043396 0.67515662582 114879795 114879872 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114879794;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113120036-113120113-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114879795-114879872&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TVTFYWRSLWSHQSMKFSARGNSLAEGHRPMR Same 484121 chr10:113120036-113120113- 16627 16627 189 0 719 113118964 113126911 1110 1110;6516;16816;37245;38490;54651;58469;62875;67669;70173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118964-113126911&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.576923076923 0.770750988142 -0.296496153846 0.998 -0.933123076923 0.636626923077 0.0166622204457 0.397319192018 33940 4406 4406;18572;33940;40718;63931;65767;72176;72358;72407;73429 -3.78234615385 0.9096 -5.91595769231 2.13361153846 0.024723036642 0.509064233751 25415 6655 6655;10141;25415;26332;35901;38764;51629;51984;53928;72240 0.0 0.0 ENST00000346198.5 AntiCDSintron not annotated putative regulatory region 16817 505802 chr14:105626031-105626066- NoOverlap chr14 105626031 105626066 - 8.83953334639 12 0.419647262277 -0.934791684151 9.77432503055 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105626030;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105626031-105626066-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105626031-105626066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.080997310757 0.183947935749 1.03515737926 106092368 106092403 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106092367;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105626031-105626066-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106092368-106092403&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHGTTSLAASTKGPSVFPLAPCSR None NA NA 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.694444444444 0.5 14.1388916667 0.7595 -2.460775 16.5996666667 0.419118220945 1.01831372573 3810 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 18.7979333333 0.5201 -4.17410833333 22.9720416667 0.698098844959 1.02543534095 2818 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.070012183826 chr16:67661896-67662647+ ENST00000390543.3 NC immunoglobulin segment overlaps an immunoglobulin region 16835 531718 chr19:48469536-48469562- NoOverlap chr19 48469536 48469562 - 7.91031111611 9 0.806198553784 -1.70127746794 9.61158858405 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48469535;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469536-48469562-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48469536-48469562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0895430027665 0.183833716043 1.02764353777 48972793 48972819 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48972792;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469536-48469562-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48972793-48972819&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGENAPATPSRPRPSPTYHR Same 533193 chr19:48469536-48469562- 16653 16653 182 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 0.794117647059 -3.1549 0.8044 -6.9765 3.8216 -0.0123172746103 0.548095506769 48700 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -5.64492222222 0.4003 -10.2582666667 4.61334444444 -0.0336836519096 0.48896606281 60369 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.0 ENST00000593476.1,ENST00000427476.4,ENST00000595676.1,ENST00000391881.7 NC,AntiCDSintron,AntiUTR5intron,AntiNCintron coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 16856 512301 chr16:72427959-72428006+ NoOverlap chr16 72427959 72428006 + 3.34995630383 16 0.945904859998 -4.61989373527 7.96985003911 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72427958;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427959-72428006%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72427959-72428006&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.159936796017 0.18347787613 1.03268453874 72461858 72461905 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72461857;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427959-72428006%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72461858-72461905&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLCQLLWVSITLQSKWMVGKDYYTE*SLRC Same 513945 chr16:72427959-72428006+ 19286 19286 -2430 4 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.75 -0.5372875 0.9978 -5.3164375 4.77915 0.0387291948684 0.687532254043 25936 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -5.90346875 0.8166 -13.5715375 7.66806875 0.0159434907231 0.667957411443 28400 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000564508.2,ENST00000561611.2 NC,AntiNCintron not annotated potentially spurious 16859 500742 chr14:22478901-22478927+ NoOverlap chr14 22478901 22478927 + 9.49781121148 9 0.901701380941 2.54152229428 6.9562889172 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22478900;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22478901-22478927%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22478901-22478927&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.202170416091 0.183425440587 0.858541911936 22947890 22947916 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22947889;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22478901-22478927%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22947890-22947916&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVFGKGTKLTVNPCK None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.407407407407 1.125 11.7915111111 0.9827 -0.135333333333 11.9268444444 0.515803766592 0.989385978072 3038 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 15.0028777778 0.4238 -3.2958 18.2986777778 0.358495515127 0.93779370249 4185 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390482.1,ENST00000611204.4,ENST00000514473.2 NC,NCintron,AntiNCintron immunoglobulin segment overlaps an immunoglobulin region 16907 505797 chr14:105624758-105624790- NoOverlap chr14 105624758 105624790 - 6.60924553329 11 0.503807125963 -9.82567271319 16.4349182465 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105624757;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105624758-105624790-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105624758-105624790&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00907577483679 0.182852301651 0.950230208288 106091095 106091127 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106091094;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105624758-105624790-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106091095-106091127&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQLGPPSALGVTAVPTSVPTGQPREPQVYTLPPSQEEMTK None NA NA 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.314285714286 13.4702090909 0.7669 -10.4477636364 23.9179727273 0.383242393817 0.959458985693 4222 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 13.7775727273 0.4672 -13.0307090909 26.8082818182 0.541553352685 1.05739886414 3381 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.0993951039564 chr22:23573266-23573585- ENST00000390543.3 NC immunoglobulin segment overlaps an immunoglobulin region 16922 564630 chr5:82304822-82304848+ NoOverlap chr5 82304822 82304848 + 9.20697768529 9 0.836102845808 1.27038904031 7.93658864498 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;82304821;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A82304822-82304848%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A82304822-82304848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.177946113945 0.182672268389 0.937633830569 81600641 81600667 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;81600640;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A82304822-82304848%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A81600641-81600667&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTVDPDNSNCSEESAR Same 565618 chr5:82304822-82304848+ 16018 16018 904 0 579 82304663 82304848 881 881;16922 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:82304663-82304848&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.37037037037 0.0 8.89714444444 0.9827 -3.16215555556 12.0593 0.396837349201 1.00777475031 4049 559 559;4049 22.1313666667 0.8276 0.117722222222 22.0136444444 0.840856691732 0.982660846969 2348 999 999;2348 0.0 0.0893435153444 chrX:154434208-154434446+ ENST00000380167.8 UTR5 pseudogene ATP6AP1L has been switched to pseudogene ENSG00000205464 from coding based on the discovery of pseudo exons 16923 507795 chr15:90943503-90943589+ NoOverlap chr15 90943503 90943589 + 5.05667587395 29 0.363839275144 0.896451701892 4.16022417206 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;90943502;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A90943503-90943589%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A90943503-90943589&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0642244069177 0.182670299043 0.838488203629 91486733 91486819 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;91486732;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A90943503-90943589%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A91486733-91486819&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VCTEVRPVAQEDAGAEKIFQSNGIQLLQHLLDTRATLR Same 509526 chr15:90943503-90943589+ 17719 17719 -796 0 295 90934338 90943589 390 390;3142;16923;17834 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:90934338-90943589&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.505747126437 0.0 14.3835827586 0.8707 5.48496551724 8.89861724138 0.916700270884 1.00877620537 1242 1212 1212;1242;1842;27563 14.3835827586 0.2722 5.48496551724 8.89861724138 0.49688886133 0.791126197211 3539 849 849;3153;3539;18232 0.917433522558 chr15:90940306-90940473+ 0.917285968836 chr15:90940306-90940473+ ENST00000394275.6,ENST00000556704.1 CDSintron,NCintron coding exon(s) UNC45A 5' exons 16962 577666 chr7:27143727-27143804+ NoOverlap chr7 27143727 27143804 + 3.73308457778 26 0.864194705119 0.546792271046 3.18629230673 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27143726;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143727-27143804%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27143727-27143804&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.258897333028 0.182263836619 0.706112392131 27183346 27183423 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27183345;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143727-27143804%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27183346-27183423&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGHVLGSLLRRHPNMGYDFESRAFVVQS*ILPDDL Same 578705 chr7:27143727-27143804+ 16783 16783 179 6 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 1.03174603175 0.104480769231 1.0 -0.447630769231 0.552111538462 0.0310067086636 0.391671057397 28298 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -4.16815769231 0.9324 -2.87311923077 -1.29503846154 -0.0139195160994 0.365722395673 43523 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NCintron,AntiNCintron not annotated putative regulatory region 16967 485919 chr11:111449753-111449803+ NoOverlap chr11 111449753 111449803 + 3.42975284597 17 0.788165282135 -4.04838240848 7.47813525445 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111449752;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111449753-111449803%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111449753-111449803&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0653702531666 0.182202379847 1.01954449345 111320478 111320528 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111320477;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111449753-111449803%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111320478-111320528&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CVPHQEMPMDMTQALGLCLCWGQQSSRMCSPLCPER Same 487877 chr11:111449753-111449803+ 17052 17052 -85 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.627450980392 0.0 1.75861764706 0.9574 -4.63965882353 6.39827647059 0.153621459526 0.827598688475 11325 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 11.3701 0.5837 -4.77885294118 16.1489529412 0.624437507292 0.956569560553 3082 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000531398.1,ENST00000525890.1 AntiUTR5intron,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 16980 509062 chr15:62246165-62246323- NoOverlap chr15 62246165 62246323 - 2.72971698431 53 0.284022796403 -2.24886603014 4.97858301445 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;62246164;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A62246165-62246323-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A62246165-62246323&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.026548887773 0.181973859332 1.00287499926 62538364 62538522 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;62538363;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A62246165-62246323-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A62538364-62538522&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLSQLNPYPEPPAGPSEVEQQLQAEAEHLRKELENLAGQL*AQVEENEGLSRLNEEQEEVAEIVGTR Same 510786 chr15:62246165-62246323- 15007 15007 1973 20 698 62246165 62256086 1081 1081;16980;22956 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:62246165-62256086&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.584905660377 0.38038277512 8.9956 0.6283 -2.82424150943 11.8198415094 0.990416405905 1.04305967478 830 49 49;830;7857 3.79507924528 0.6502 -11.7736716981 15.5687509434 0.748464908033 1.05392979269 2638 462 462;2638;4690 0.946825309091 chr9:128260465-128260802- 0.500808971967 chr15:75290381-75290889+ ENST00000570077.1,ENST00000562306.5 NC,NCintron pseudogene extension golgin subfamily A pseudogene extended (ENSG00000166104) 16983 534724 chr2:110335605-110335634+ NoOverlap chr2 110335605 110335634 + 8.33679986 10 0.56757457847 -4.53490972519 12.8717095852 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110335604;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110335605-110335634%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110335605-110335634&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0829910177853 0.181924831714 1.01634880659 111093182 111093211 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111093181;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110335605-110335634%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111093182-111093211&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAWPWAMTCRPGHYCPAQGLLSIPCPMVSLSPGIPSWCFWFGMGR Same 536076 chr2:110335605-110335634+ 16749 16749 234 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.7 0.576923076923 9.14939 0.6499 -7.89795 17.04734 0.252634167849 1.01396862115 6898 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 21.55938 0.6073 -5.19194 26.75132 0.81263900966 1.04288648167 2438 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 17001 531719 chr19:48469676-48469705- NoOverlap chr19 48469676 48469705 - 10.0077901125 10 0.770849164569 6.38961984515 3.61817026734 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48469675;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469676-48469705-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48469676-48469705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.261712083236 0.181755476082 0.496909069924 48972933 48972962 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48972932;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469676-48469705-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48972933-48972962&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSPNNGLERPAFGPRRKPVQRPTK Same 533194 chr19:48469676-48469705- 16706 16706 295 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 1.0 2.79555 0.8211 -3.24711 6.04266 0.00742081668219 0.730237101971 37926 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -3.16484 0.4059 -8.06196 4.89712 -0.0246033298544 0.514836981327 52160 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.0 ENST00000593476.1,ENST00000325139.9,ENST00000427476.4,ENST00000595676.1,ENST00000391881.7 NC,AntiUTR5,AntiCDSintron,AntiUTR5intron,AntiNCintron coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 17029 481137 chr10:75708193-75708225- NoOverlap chr10 75708193 75708225 - 8.91070010445 11 1.0 5.52775479447 3.38294530999 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75708192;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75708193-75708225-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75708193-75708225&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.278365452971 0.181503971574 0.508744232752 77467951 77467983 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77467950;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75708193-75708225-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77467951-77467983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QCGIHPAWWSRRPASGSRQR Same 483051 chr10:75708193-75708225- 18299 18299 -1270 0 1239 75708158 75708438 1870 1870;17029;18044;18790;19389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75708158-75708438&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.545454545455 6.68097272727 1.0 6.32605454545 0.354918181818 0.121985371924 0.246232620499 13782 3862 3862;13782;42906;49661;52248 8.17256363636 0.9357 1.27264545455 6.89991818182 0.216021610998 0.595145148791 5843 Best 5843 5843;8667;44155;48068;65299 0.0 0.0 ENST00000611255.4,ENST00000593699.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 17103 585798 chr8:9555878-9555970- NoOverlap chr8 9555878 9555970 - 3.39810958985 31 0.846542477917 0.775558065984 2.62255152387 ENST00000310430.10,ENST00000520408.5,ENST00000522110.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;9555877;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A9555878-9555970-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A9555878-9555970&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.278519534577 0.180735436596 0.671461389518 9413388 9413480 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;9413387;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A9555878-9555970-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A9413388-9413480&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGAVVDDGGDDAESDATPPSSDSPSTVTAATAPTARPHFR Same 586735 chr8:9555878-9555970- 17010 17010 93 0 992 9555878 9556023 1519 1519;17103 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:9555878-9556023&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.677419354839 1.11195652174 1.00955483871 0.9552 -2.60067741935 3.61023225806 0.174743860659 0.705762622898 10018 9756 9756;10018 -7.47554193548 0.6385 -12.1554 4.67985806452 0.027699578257 0.625911980586 24446 17041 17041;24446 0.0 0.0 ENST00000607598.2,ENST00000310430.10 NC,AntiCDS not annotated putative regulatory region 17115 500754 chr14:22518478-22518504+ NoOverlap chr14 22518478 22518504 + 10.8372111718 9 0.945452387613 7.43792250421 3.39928866757 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22518477;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22518478-22518504%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22518478-22518504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.259507406736 0.180606891539 0.429077229644 22987456 22987482 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22987455;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22518478-22518504%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22987456-22987482&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HCGDNYGQNFVFGPGTRLSVLPCK None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.701298701299 6.87954444444 0.9353 7.09685555556 -0.217311111111 0.0266641557748 0.182598998203 29988 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 6.06793333333 0.3857 8.01595555556 -1.94802222222 -0.0151501945215 0.231768579108 44419 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390511.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 17131 582915 chr7:143646671-143646697- NoOverlap chr7 143646671 143646697 - 10.1925667213 9 0.612649729152 -1.91624437438 12.1088110957 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143646670;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143646671-143646697-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143646671-143646697&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.149259961559 0.180417453735 1.02275658489 143343764 143343790 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143343763;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143646671-143646697-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143343764-143343790&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ENPVASDSYEAAVLSLATGLAHSGTDCSQLAQGLGTWTCSSSLYPSKHPITVEINGINPGMK Same 583844 chr7:143646671-143646697- 18830 18830 -1699 0 72 143639739 143647639 81 81;258;270;395;400;502;966;2158;2403;4982;5614;17131 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143639739-143647639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.518518518519 0.675 23.2809222222 0.9271 7.36815555556 15.9127666667 0.668145836018 0.943215759002 2210 55 55;237;401;406;444;543;877;972;1189;1192;2210;3094 26.6643222222 0.5708 -1.94603333333 28.6103555556 0.79961996103 1.03769419241 2474 160 160;415;779;798;950;1051;1244;1273;1585;1738;2308;2474 0.968657403063 chr7:143719683-143720674+ 0.886907834013 chr7:143719683-143720674+ ENST00000518791.5,ENST00000357344.8 AntiCDSintron,AntiUTR5intron protein-coding gene protein-coding gene ENSG00000283528 17171 560438 chr4:157361368-157361397+ NoOverlap chr4 157361368 157361397 + 8.87274017334 10 0.978554970626 3.21539981365 5.65734035969 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;157361367;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157361368-157361397%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A157361368-157361397&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.222869344894 0.180071665387 0.764532584182 158282520 158282549 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;158282519;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157361368-157361397%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A158282520-158282549&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LMDLLQTVAPAGYFQRYINAHLALQILPFA Same 561422 chr4:157361368-157361397+ 17018 17018 153 0 430 157360983 157365960 611 611;15695;15785;16090;17171;20574;21787;68912;71132 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:157360983-157365960&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.366666666667 1.07142857143 8.04792 0.9996 -2.90304 10.95096 0.410723732808 0.989159711514 3893 Best 3893 3893;6182;6226;10710;11582;13344;21003;56071;56585 9.28922 0.9344 -10.24352 19.53274 0.435399463387 0.99383352898 3805 3522 3522;3805;7560;13336;15714;28221;29180;32592;39824 0.0 0.0 ENST00000264426.13,ENST00000323661.10 CDSintron,NCintron coding exon(s) GRIA2 alternative final exon 17264 501754 chr14:62127863-62127889+ NoOverlap chr14 62127863 62127889 + 9.50397776233 9 0.924193179217 2.82645567258 6.67752208975 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;62127862;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A62127863-62127889%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A62127863-62127889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.202432786069 0.179140607055 0.834087880838 62594581 62594607 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;62594580;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A62127863-62127889%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A62594581-62594607&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ENMQKKKIYIK Same 503654 chr14:62127863-62127889+ 15679 15679 1585 0 221 62127829 62128391 275 275;6410;17264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:62127829-62128391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 6.21172222222 0.9616 -0.963733333333 7.17545555556 0.153818400836 0.792177638164 11309 220 220;10643;11309 5.56464444444 0.874 0.278055555556 5.28658888889 0.10625928324 0.515860612789 10933 398 398;3869;10933 0.0 0.0 ENST00000334389.5 NC pseudogene unitary pseudogene ENSG00000186369 17351 491555 chr12:52264108-52264227+ NoOverlap chr12 52264108 52264227 + 3.26062750164 40 0.365978866255 -1.14750495553 4.40813245717 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52264107;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52264108-52264227%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52264108-52264227&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0275307769798 0.178129094737 0.924939251747 52657892 52658011 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52657891;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52264108-52264227%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52657892-52658011&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FSYHSGSTCGPSTACNTIVLIKESLLMPLNLEIAQCIKQEEEKIKCLNSRFTAFLHKVGVLDHTLPEPPPCAQPGLGTEER Same 493533 chr12:52264108-52264227+ 17184 17184 167 0 489 52264108 52277736 722 722;766;1062;1070;1290;2405;17351 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52264108-52277736&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.525 0.0 8.74864 0.9637 -3.993765 12.742405 1.0234063972 1.04240821157 546 Best 546 546;672;709;783;1453;1608;1712 37.765965 0.8615 -7.46501 45.230975 1.01566882718 0.942206234269 839 783 783;839;1030;1208;1231;1471;2431 0.504339232555 chr12:52320952-52321335- 0.436243024687 chr12:52320952-52321335- ENST00000553310.6 UTR5intron pseudogene keratin family pseudogene (ENSG00000284883) 17354 589755 chr9:106616132-106616185+ NoOverlap chr9 106616132 106616185 + 5.34661672182 18 0.883497367819 2.15746112333 3.18915559848 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;106616131;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A106616132-106616185%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A106616132-106616185&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.305517449522 0.178088410634 0.622589468505 109378413 109378466 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;109378412;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A106616132-106616185%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A109378413-109378466&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFITNSLEALKRGWQKLKLKWSLT Same 590702 chr9:106616132-106616185+ 16998 16998 356 0 11253 106616132 106621609 Best 17354 17354;52586 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:106616132-106621609&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.28125 0.755627777778 1.0 -1.67856666667 2.43419444444 0.0523141290922 0.505136877635 22661 12480 12480;22661 -0.901666666667 0.6645 -4.27717777778 3.37551111111 0.0487221675435 0.518019072828 18990 14179 14179;18990 0.0 0.0 ENST00000444985.6 NC not annotated potentially spurious 17370 521949 chr17:47896413-47896544- NoOverlap chr17 47896413 47896544 - 4.26320677386 44 0.844590329942 4.86972270432 -0.606515930458 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;47896412;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896413-47896544-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A47896413-47896544&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.619965154591 0.177921955973 0.307495808132 45973779 45973910 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;45973778;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896413-47896544-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A45973779-45973910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPPEAPPSRPAGSEGAGSRTPPSGCLRPAGQPRSSSGRESSLPRPS*SRAPTPDPAPGGNPRPR None NA NA 4 443 47896176 47896544 633 633;10409;17370;20193;30561;56450;73094;73160 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:47896176-47896544&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.810606060606 0.767441860465 -0.231543181818 0.9116 -0.0200113636364 -0.211531818182 0.00773063244354 0.388461554518 37782 6473 6473;12368;17549;37782;39868;58958;68592;73642 -5.10296818182 0.3957 -3.77531818182 -1.32765 -0.0301555399916 0.420718428966 57233 14976 14976;26600;36070;36380;45476;50232;50264;57233 0.0 0.0 ENST00000376741.4,ENST00000613139.1 AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 17455 559230 chr4:76639563-76639595+ NoOverlap chr4 76639563 76639595 + 7.53794546561 11 0.894340983652 1.35609983856 6.18184562705 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;76639562;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A76639563-76639595%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A76639563-76639595&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.202205566251 0.176816489245 0.855824717799 77560716 77560748 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;77560715;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A76639563-76639595%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A77560716-77560748&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLFLFPLGCPPLPCQSHCWPVVDMVVSKGGCLALMLPR Same 560215 chr4:76639563-76639595+ 16433 16433 1022 0 874 76639563 76639640 1347 1347;17455 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:76639563-76639640&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.636363636364 0.336734693878 8.71385454545 0.982 0.566190909091 8.14766363636 0.383151461422 0.866303373698 4224 Best 4224 4224;10062 7.6258 0.3501 -1.2001 8.8259 0.11104030121 0.674878101081 10543 Best 10543 10543;10909 0.0 0.0 ENST00000425645.1,ENST00000296043.6,ENST00000469923.5 NC,CDSintron,NCintron coding exon(s) SHROOM3 alternative first exon 17559 495348 chr12:52721510-52721650- NoOverlap chr12 52721510 52721650 - 2.68464048873 47 0.450223284943 -0.880900000995 3.56554048972 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52721509;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52721510-52721650-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52721510-52721650&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0317960007246 0.17565744453 0.863754348416 53115294 53115434 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;53115293;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52721510-52721650-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A53115294-53115434&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QWCQATAGSAPSCPPLPPAQEGLVVGGSAACAMMGGGFCSQSLHGLGGKKTIPISVAGGGTWASGFSGAGGFGGPGGGCFGGSGFGGGGR Same 497346 chr12:52721510-52721650- 17881 17881 -322 0 536 52721165 52729639 810 810;1910;17559;33017;63856 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52721165-52729639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.63829787234 0.239118145845 8.34060638298 0.831 -4.51370425532 12.8543106383 1.01259832895 1.03030866511 632 67 67;82;632;969;1304 15.2507276596 0.5891 -3.50497234043 18.7557 1.05182449136 1.04762094985 301 120 120;301;726;749;1933 0.327157230553 chr12:52776692-52777291- 0.345868715197 chr12:52795398-52796042- pseudogene extension KRT125P (ENSG00000258036) and KRT126P (ENSG00000257402) extended, i.e. two distinct keratin pseudogenes within the same genomic window 17582 591956 chr9:41053753-41053896- NoOverlap chr9 41053753 41053896 - 5.46628542555 48 0.345601586938 4.41495418362 1.05133124193 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;41053752;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41053753-41053896-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A41053753-41053896&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.237037646383 0.175433096857 0.557077443738 69126982 69127125 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;69126981;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41053753-41053896-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A69126982-69127125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IG*LIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGGMWFSICLNNHDFLPLILL Same 592910 chr9:41053753-41053896- 18806 18806 -1224 2 171 41039613 41053896 205 205;261;1694;3615;17582;51960 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:41039613-41053896&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.506944444444 0.111627906977 17.8425645833 0.8873 12.3845729167 5.45799166667 1.03937147524 0.904658263288 371 187 187;248;261;371;844;4863 57.6088583333 0.9648 27.49863125 30.1102270833 0.974929707583 1.03487199119 1512 Best 1512 1512;1518;1550;1553;1648;1663 0.99627621755 chr9:68378199-68378361+ 0.99890173285 chr9:68378199-68378361+ ENST00000613141.1,ENST00000617940.1 NC,AntiNCintron pseudogene PGM5P2 unprocessed pseudogene (ENSG00000277778) 17598 479308 chr10:123517645-123517671+ NoOverlap chr10 123517645 123517671 + 8.98527786467 9 0.751123657418 -0.280288736025 9.26556660069 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;123517644;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A123517645-123517671%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A123517645-123517671&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.139767070089 0.175182855582 1.00504688587 125277161 125277187 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;125277160;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A123517645-123517671%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A125277161-125277187&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INGTCGESAPSLIMSSEPLVPTPAGGPWAQHSA Same 481213 chr10:123517645-123517671+ 18587 18587 -989 0 11374 123517645 123517671 Best 17598 17598 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:123517645-123517671&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.0 3.49781111111 0.9826 -1.04112222222 4.53893333333 0.0370454864429 0.594746564125 26419 Best 26419 26419 -6.91751111111 0.462 -11.6034111111 4.6859 -0.0389326646073 0.487339130837 64452 Best 64452 64452 0.0 0.0 ENST00000448347.5 NC not annotated potentially spurious 17599 517999 chr17:48307328-48307372+ NoOverlap chr17 48307328 48307372 + 5.16490674019 15 0.903522290888 -0.837826649348 6.00273338954 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48307327;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48307328-48307372%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48307328-48307372&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.140886565042 0.175149351932 0.906010435257 46384690 46384734 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46384689;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48307328-48307372%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46384690-46384734&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EYTNLFCFVLFCLECGEKREKGREESWTLLYGCHGCK Same 519400 chr17:48307328-48307372+ 17566 17566 33 0 10925 48307328 48313286 16723 16723;17599;22434;62115;67342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48307328-48313286&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488888888889 0.0 1.19599333333 0.9977 -3.92622 5.12221333333 0.0924487629084 0.710118058211 16724 9986 9986;10392;16724;44437;45878 -4.97670666667 0.5674 -14.5521333333 9.57542666667 0.0547601574983 0.739564578409 17787 16697 16697;17787;63179;68455;70554 0.0 0.0 ENST00000581362.1,ENST00000336915.10,ENST00000581400.2 NC,AntiCDSintron,AntiNCintron not annotated potentially spurious 17625 584632 chr8:76526118-76526198+ NoOverlap chr8 76526118 76526198 + 2.60362586007 27 0.910800844333 -2.60409258582 5.20771844588 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;76526117;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A76526118-76526198%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A76526118-76526198&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00145619192106 0.174917297137 0.933586182394 77438353 77438433 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;77438352;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A76526118-76526198%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A77438353-77438433&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MIQWFHFLGNE*QKKMKKDTTDRARMMGAG Same 585563 chr8:76526118-76526198+ 18421 18421 -796 12 1477 76526118 76535635 2199 2199;17625;44003 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:76526118-76535635&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.395061728395 0.0 -0.792022222222 0.9978 -6.17728888889 5.38526666667 0.145020199773 0.815275991776 11909 5647 5647;11909;17282 -3.12064814815 0.7189 -10.6541814815 7.53353333333 0.147357802853 0.744962972019 8140 Best 8140 8140;11951;23455 0.0 0.0 ENST00000522961.1 AntiNCintron not annotated putative regulatory region 17642 468013 chr1:173636908-173636934+ NoOverlap chr1 173636908 173636934 + 9.05395545728 9 0.776394293126 0.354755706257 8.69919975102 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;173636907;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A173636908-173636934%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A173636908-173636934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.152295732156 0.174811115575 0.981793108368 173606047 173606073 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;173606046;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A173636908-173636934%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A173606047-173606073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QASLEKPGNDLESPLINNIDQTLHRVATTASVIYK Same 469879 chr1:173636908-173636934+ 18014 18014 -372 0 1014 173635609 173636934 1550 1550;3537;17642 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:173635609-173636934&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.0 11.2359777778 0.9524 -1.1084 12.3443777778 0.43321377776 1.00271428076 3671 1682 1682;3137;3671 14.1078444444 0.3681 -0.340866666667 14.4487111111 0.236000240909 0.833279601187 5448 3453 3453;3847;5448 0.0 0.0 ENST00000417563.1,ENST00000333279.2 NC,AntiCDSintron protein-coding gene protein coding gene ENSG00000232113 17657 534728 chr2:110337521-110337574+ NoOverlap chr2 110337521 110337574 + 3.61746650934 18 0.680275171028 -3.53770560026 7.1551721096 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110337520;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110337521-110337574%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110337521-110337574&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0155979879038 0.174672652168 1.00980564455 111095098 111095151 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111095097;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110337521-110337574%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111095098-111095151&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAQDISWCLPRPPGLFCATTGQAAPGGPYAPGK Same 536080 chr2:110337521-110337574+ 18651 18651 -994 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.759259259259 0.264705882353 11.0044277778 0.7782 4.60272222222 6.40170555556 0.421179552192 0.811633923484 3789 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 23.3773444444 0.6871 11.4473111111 11.9300333333 0.838466882285 0.792285859739 2356 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 17708 563916 chr5:37840660-37840692+ NoOverlap chr5 37840660 37840692 + 5.69118174098 11 0.86178377966 -2.79252717305 8.48370891403 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;37840659;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37840660-37840692%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A37840660-37840692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00922979105014 0.17397861649 1.02188488703 37840762 37840794 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;37840761;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37840660-37840692%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A37840762-37840794&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RALQWLF*FAF Same 564904 chr5:37840660-37840692+ 16999 16999 709 3 1098 37834655 37842122 1665 1665;3432;9737;17708;23431;43248;66339;67574 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:37834655-37842122&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.545454545455 0.857142857143 -1.55145454545 0.9978 -5.18514545455 3.63369090909 -0.0380040587532 0.54736000243 65427 4518 4518;14736;23580;58453;64403;65427;67583;67906 -1.47669090909 0.4614 -5.22131818182 3.74462727273 -0.0137011391714 0.478057979738 43350 5584 5584;29735;41849;43350;44494;45609;51811;60370 0.0 0.0 ENST00000503382.6 NCintron not annotated putative regulatory region 17729 522312 chr17:50761366-50761416- NoOverlap chr17 50761366 50761416 - 5.10374707334 17 0.688180989951 -0.437070523991 5.54081759733 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;50761365;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A50761366-50761416-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A50761366-50761416&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.139956135173 0.173812399192 0.882542570496 48838727 48838777 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;48838726;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A50761366-50761416-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A48838727-48838777&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTEYVPSLTERPCYDSKAAKMTY Same 523740 chr17:50761366-50761416- 18424 18424 -695 0 11440 50750924 50761416 Best 17729 17729;20331;30313;39578;68410 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:50750924-50761416&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.411764705882 0.0 9.31374117647 0.9295 -5.08525882353 14.399 0.66027084247 1.04484083895 2260 Best 2260 2260;17611;40644;48115;53652 29.2871647059 0.7535 5.36843529412 23.9187294118 1.03118538048 1.02558860892 607 Best 607 607;33223;37013;53407;69870 0.367221788667 chr17:50695997-50696143- 0.713154735896 chr17:50695997-50696143- ENST00000300458.1 NC protein-coding gene protein-coding gene ENSG00000167117; found after examing lncRNAs for coding potential 17791 481626 chr10:100108360-100108389- NoOverlap chr10 100108360 100108389 - 7.29050997496 10 0.779047837034 -1.44235981703 8.73286979198 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100108359;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100108360-100108389-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100108360-100108389&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0960021282918 0.17316023649 1.01403001553 101868117 101868146 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;101868116;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100108360-100108389-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A101868117-101868146&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TDYFLPFSLGK Same 483542 chr10:100108360-100108389- 17899 17899 -108 0 90 100105748 100122651 105 105;606;781;1442;2015;3184;14859;17791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100105748-100122651&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.366666666667 1.0 1.95866 0.8178 -9.5967 11.55536 0.0728507496606 1.01724778725 19257 2120 2120;2485;2770;2888;8530;10411;15939;19257 0.34099 0.3867 -12.06861 12.4096 0.0589274792199 0.813228178574 17036 209 209;267;1101;3020;3409;3819;4117;17036 0.0 0.159964458545 chr10:133537751-133537892+ pseudogene unitary pseudogene ENSG00000283232 17834 507793 chr15:90935124-90935150+ NoOverlap chr15 90935124 90935150 + 6.97147801187 9 0.75446707866 -3.65453328027 10.6260112921 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;90935123;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A90935124-90935150%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A90935124-90935150&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00442627926201 0.17259182293 1.0435876952 91478354 91478380 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;91478353;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A90935124-90935150%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A91478354-91478380&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELPAGLCGDSLGAPGACLHLR Same 509524 chr15:90935124-90935150+ 18253 18253 -419 0 295 90934338 90943589 390 390;3142;16923;17834 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:90934338-90943589&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 0.818181818182 -9.29925555556 0.9229 -13.286 3.98674444444 0.0332085577851 0.582229676509 27563 1212 1212;1242;1842;27563 -20.3406555556 0.4193 -20.5724777778 0.231822222222 0.0525140800695 0.233523986901 18232 849 849;3153;3539;18232 0.0 0.0 ENST00000394275.6,ENST00000448987.1 UTR5,AntiNC coding exon(s) UNC45A 5' exons 17846 531955 chr19:50786078-50786107- NoOverlap chr19 50786078 50786107 - 7.02740002871 10 0.734712748913 -2.51103996634 9.53843999505 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;50786077;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A50786078-50786107-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A50786078-50786107&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0592503518188 0.172488388704 1.03707273208 51289335 51289364 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;51289334;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A50786078-50786107-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A51289335-51289364&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMNFQEVRRGLAGK Same 533431 chr19:50786078-50786107- 18645 18645 -799 0 1690 50785936 50790413 2506 2506;17846;72432 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:50785936-50790413&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.0 11.89886 0.9625 -4.932 16.83086 0.566791514829 1.0166172769 2734 1481 1481;2734;6730 8.25737 0.3964 -7.61549 15.87286 0.223405760726 0.90942580482 5677 4002 4002;5486;5677 0.0 0.0 ENST00000562076.1 NC protein-coding gene protein coding gene ENSG00000261341 17863 520373 chr17:8222239-8222295- NoOverlap chr17 8222239 8222295 - 5.79569468373 19 0.656861540438 2.64833160764 3.14736307608 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8222238;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8222239-8222295-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8222239-8222295&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.253831698343 0.172247271462 0.624056245246 8125557 8125613 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8125556;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8222239-8222295-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8125557-8125613&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLLVSIVVSIPACHAGDRGSIPRRGEY Same 521783 chr17:8222239-8222295- 18229 18229 -366 0 1341 8221594 8227025 2014 2014;17863;26203;31694;31965;37522;40474;40990;66443;67460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8221594-8227025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.684210526316 1.06684491979 1.46717368421 0.9948 -1.35777894737 2.82495263158 0.0948261498311 0.549446678755 16441 2913 2913;4601;11583;16441;20948;21333;25351;28719;65647;67294 1.46717368421 0.3109 -1.35777894737 2.82495263158 0.0274371267703 0.502885712567 24536 5986 5986;8484;15863;24228;24536;28672;31456;32683;52097;52689 0.0 0.0 ENST00000315707.3 NC not annotated 6 tRNAs 17966 557793 chr3:184499610-184499639- NoOverlap chr3 184499610 184499639 - 6.39392004013 10 0.787899595636 -2.94906008244 9.34298012257 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;184499609;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184499610-184499639-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A184499610-184499639&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0195479341202 0.171113842144 1.03682964692 184217398 184217427 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;184217397;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A184499610-184499639-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A184217398-184217427&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FFSWHLGLGAAVLAAVYGLCSLWHR Same 558764 chr3:184499610-184499639- 17846 17846 120 0 22 184499610 184500370 22 22;541;811;1939;2622;7155;17966 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:184499610-184500370&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.633333333333 0.0 20.57361 0.9856 -3.63488 24.20849 0.766091936086 0.962918380565 1807 35 35;97;1016;1294;1807;1985;2257 25.5491 0.4964 -5.0471 30.5962 0.689200087578 1.04740757344 2852 17 17;96;2057;2581;2827;2852;3634 0.0 0.233206934577 chr1:182399664-182400485- ENST00000444495.1 AntiCDSintron pseudogene transmembrane epididymal protein 1 (TEDDM1) pseudogene (ENSG00000283625) 17969 558394 chr4:6674405-6674539+ NoOverlap chr4 6674405 6674539 + 2.5821733132 45 0.296963285098 -2.9930533535 5.5752266667 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;6674404;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6674405-6674539%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A6674405-6674539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00597918932458 0.171093773311 1.02662416909 6676132 6676266 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;6676131;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6674405-6674539%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A6676132-6676266&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEVEAEERGARAPAPRPRAEAEERVARLCAEAERKAAEAARMGRRIVELHQR Same 559370 chr4:6674405-6674539+ 16149 16149 1820 0 11567 6673946 6674539 Best 17969 17969;38432 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:6673946-6674539&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.77037037037 0.915071770335 6.76986 0.5712 -4.73539111111 11.5052511111 0.75369633932 1.06994244639 1851 Best 1851 1851;35645 7.40243555556 0.333 -3.39327555556 10.7957111111 0.563566783604 0.921569051544 3288 Best 3288 3288;39694 0.391265553276 chr4:6640863-6641246+ 0.20978058962 chr4:6640863-6641246+ ENST00000307533.10 NC protein-coding gene protein-coding gene ENSG00000170846; found after examing lncRNAs for coding potential 17970 572445 chr6:108157673-108157888+ NoOverlap chr6 108157673 108157888 + 2.91245976877 72 0.6018020481 1.44663746779 1.46582230098 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108157672;216;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108157673-108157888%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108157673-108157888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.264439939534 0.171082398366 0.640386698252 108478877 108479092 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108478876;216;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108157673-108157888%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108478877-108479092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLFGVCEKWGSGPSQWGAPRRGLSGASANRSAAAPINPPFVRPARPPPPQPHQRPIVRPRRAAGFTLFKQPVLSRAVR Same 573472 chr6:108157673-108157888+ 15502 15502 2468 0 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 1.0125 0.839279166667 0.937 -2.13263333333 2.9719125 0.321189065086 0.71610553573 5179 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 -5.3543375 0.8779 -8.51608194444 3.16174444444 0.157374109814 0.632810845491 7685 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000441184.1,ENST00000440575.6,ENST00000492070.1 NC,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 17985 512379 chr16:73232217-73232264+ NoOverlap chr16 73232217 73232264 + 3.77366866358 16 0.852796215763 -3.52656880021 7.30023746379 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;73232216;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73232217-73232264%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A73232217-73232264&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0450475608907 0.170927059091 1.00608066017 73266116 73266163 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;73266115;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73232217-73232264%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A73266116-73266163&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GALQCRPPRASLPLLLIPFQEFTNIFPR Same 514023 chr16:73232217-73232264+ 17880 17880 105 0 7878 73227024 73232264 11316 11316;17985 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:73227024-73232264&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.645833333333 0.457142857143 0.9520375 0.9962 -3.42669375 4.37873125 0.0791507432478 0.657625136253 18391 Best 18391 18391;55608 -11.922475 0.7102 -14.38669375 2.46421875 -0.0441168656325 0.423017418817 68174 57779 57779;68174 0.0 0.0 ENST00000577171.1 NC not annotated putative regulatory region 18019 489525 chr11:114083087-114083125- NoOverlap chr11 114083087 114083125 - 7.92755367478 13 0.833364438263 6.4332078787 1.49434579608 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;114083086;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114083087-114083125-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A114083087-114083125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.341752050939 0.170621654228 0.314930095595 113953809 113953847 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;113953808;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114083087-114083125-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A113953809-113953847&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KASVEPARGPGTAFPRPAR Same 491510 chr11:114083087-114083125- 17682 17682 337 0 1340 114076681 114083125 2013 2013;18019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:114076681-114083125&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.692307692308 0.886363636364 8.84395384615 0.9708 7.0283 1.81565384615 0.252345622801 0.377604708941 6905 Best 6905 6905;16817 1.03049230769 0.4797 -0.657192307692 1.68768461538 0.00543195437947 0.410335067048 32750 20234 20234;32750 0.0 0.0 ENST00000335953.8,ENST00000539918.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 18044 481136 chr10:75708158-75708187- NoOverlap chr10 75708158 75708187 - 8.58815999031 10 1.0 2.62383989096 5.96432009935 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75708157;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75708158-75708187-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75708158-75708187&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.197081153512 0.17025804383 0.802457080145 77467916 77467945 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77467915;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75708158-75708187-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77467916-77467945&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IKGSRSCTYSLLHPR Same 483050 chr10:75708158-75708187- 18621 18621 -577 0 1239 75708158 75708438 1870 1870;17029;18044;18790;19389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75708158-75708438&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.47619047619 1.3149 1.0 -0.24375 1.55865 -0.017294647251 0.358032342517 52248 3862 3862;13782;42906;49661;52248 -3.21501 0.9363 -9.24857 6.03356 -0.0147861630584 0.56115106543 44155 5843 5843;8667;44155;48068;65299 0.0 0.0 ENST00000611255.4,ENST00000593699.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 18049 472686 chr1:62999128-62999199- NoOverlap chr1 62999128 62999199 - 3.97979585066 24 0.939604791333 0.73113334924 3.24866250142 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;62999127;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62999128-62999199-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A62999128-62999199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.248522760074 0.170214548793 0.696539864993 63464799 63464870 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;63464798;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62999128-62999199-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A63464799-63464870&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFTSNVIDRGQGEMLKNGQVDKFLFHTNRKDLLISLAVIEFLK Same 474565 chr1:62999128-62999199- 18802 18802 -753 0 668 62997933 63000329 1026 1026;13743;18049;27623;33268;34189;37177;59194;68808 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:62997933-63000329&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.472222222222 0.272727272727 0.107333333333 1.0 -0.700783333333 0.808116666667 0.0292878929607 0.402459775528 28973 6220 6220;8200;13946;16945;28973;32781;63612;68420;69109 -4.390575 0.9306 -6.78191666667 2.39134166667 0.0135120130796 0.507383407789 29330 6223 6223;11538;12991;22844;28460;29330;40736;45828;71146 0.0 0.0 not annotated putative regulatory region 18118 485674 chr11:85663486-85663515+ NoOverlap chr11 85663486 85663515 + 7.54793977737 10 0.902227817197 0.136200040579 7.4117397368 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;85663485;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663486-85663515%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A85663486-85663515&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.139801560938 0.169464917359 0.943384455613 85374530 85374559 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;85374529;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663486-85663515%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A85374530-85374559&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAEHERYGKRWILTR Same 487633 chr11:85663486-85663515+ 16967 16967 1151 0 640 85662411 85665175 984 984;2049;2813;3027;18118;20011;21291;24329;58708;71875 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:85662411-85665175&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.566666666667 1.15384615385 3.05403 0.9652 -1.14789 4.20192 0.0286738035641 0.578925640494 29218 2447 2447;10858;11498;16615;27666;29218;29965;35821;36919;48364 -8.96024 0.6087 -9.6641 0.70386 -0.0412169715125 0.334609550979 66127 5807 5807;12876;35731;45741;53410;58313;62812;66127;69825;72999 0.0 0.0 ENST00000527447.1,ENST00000534224.1,ENST00000260058.9 AntiUTR3,AntiCDSintron,AntiNCintron not annotated putative regulatory region 18127 539842 chr2:110035076-110035237- NoOverlap chr2 110035076 110035237 - 1.73793519813 54 0.410341943378 -2.50123704032 4.23917223844 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110035075;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110035076-110035237-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110035076-110035237&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0303559846782 0.169432135648 0.941740313021 110792653 110792814 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110792652;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110035076-110035237-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110792653-110792814&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VEGPALLPPWPHCGFQNLDPGDIPLSAQGTFRKAPGAARVEYCQPCHLGAFCGKAGLAEPQGLCHPGHHCGPGSNTSSLVSAGPIGPSQGGGQGHHR Same 541202 chr2:110035076-110035237- 17028 17028 1099 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.679012345679 0.322281167109 5.56991851852 0.6721 -3.05540555556 8.62532407407 0.710251015687 1.07530138826 2045 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 17.1391407407 0.5606 -3.77904074074 20.9181814815 1.07320662902 1.04927578912 152 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 18140 515934 chr17:2392678-2392707+ NoOverlap chr17 2392678 2392707 + 7.90918015242 10 0.680704966812 -1.47263011932 9.38181027174 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2392677;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2392678-2392707%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2392678-2392707&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.102949311246 0.169319656256 1.02731816524 2295972 2296001 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2295971;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2392678-2392707%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2295972-2296001&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPEAPPRSTRAPTRPR Same 517310 chr17:2392678-2392707+ 19733 19733 -1593 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 1.40625 -2.8072 0.9269 -9.68215 6.87495 -0.0355963501002 0.787179525946 64071 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -5.44654 0.4504 -14.52709 9.08055 -0.0127426525428 0.676022616628 42682 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.1366909745 chr11:1443106-1443139+ ENST00000572892.5,ENST00000174618.4,ENST00000571232.1 AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 18142 534538 chr2:104430374-104430472+ NoOverlap chr2 104430374 104430472 + 3.61059689928 33 0.917846350897 2.21857569525 1.39202120403 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;104430373;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A104430374-104430472%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A104430374-104430472&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.368516196688 0.169286646743 0.517824026658 105046832 105046930 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;105046831;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A104430374-104430472%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A105046832-105046930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QGPGFPFGAGNIKTWGHRADPEGLLSIMASPSLLPFTPGSWTHRCQPGNNPQTIAA Same 535890 chr2:104430374-104430472+ 18061 18061 81 0 4171 104430374 104434436 5767 5767;7541;18142;33869;59911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:104430374-104434436&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.626262626263 0.528846153846 -0.16516969697 0.9958 -3.05063939394 2.88546969697 0.118396182987 0.641394540107 14084 9209 9209;10532;13016;14084;50022 -2.80566666667 0.7096 -3.23706969697 0.431403030303 0.032692686495 0.470451300655 22956 9820 9820;22956;28260;33042;50064 0.0 0.0 not annotated potentially spurious 18194 539235 chr2:73081261-73081344- NoOverlap chr2 73081261 73081344 - 2.43736425255 28 0.876768139162 -2.66706783258 5.10443208513 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;73081260;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73081261-73081344-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A73081261-73081344&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0158427301571 0.168808439389 0.930631109627 73308389 73308472 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;73308388;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73081261-73081344-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A73308389-73308472&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLSSLGINQEAHGFVSLHSLDVSPQVESDPAALPHHLPCSPWAPAPPTPAPTAAPMLSTNLFAAASPAAATAAAAATTAAPEATPPGLLGLTNPFLTSLQSNPFFEELIADIALNSPSPAPSLPSASRASPTPLASPGKALPEWDNTFNVFAASR Same 540613 chr2:73081261-73081344- 18383 18383 -189 0 311 73071669 73081530 418 418;1129;1310;1891;4235;7622;14465;18194;23824;54581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:73071669-73081530&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.678571428571 0.222222222222 -1.818925 0.9897 -7.51870714286 5.69978214286 0.109465692555 0.834155141184 14922 166 166;734;1495;1711;1973;3802;9955;14922;47668;73713 -9.71342857143 0.7081 -15.5024571429 5.78902857143 0.0081361647031 0.642619873546 31537 2300 2300;2572;2797;3173;3182;4993;30735;31537;41635;57875 0.0 0.0209369156702 chr8:37871278-37873179- ENST00000479196.1,ENST00000258098.6,ENST00000482554.5 NC,CDSintron,NCintron coding exon(s) RAB11FIP5 2kb cassette exon 18244 518114 chr17:48626433-48626546+ NoOverlap chr17 48626433 48626546 + 2.06523421159 38 0.724815586689 -2.0811763296 4.14641054119 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48626432;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626433-48626546%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48626433-48626546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0259071883227 0.168266495759 0.890597569121 46703795 46703908 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46703794;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626433-48626546%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46703795-46703908&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLSDATPPAPHPPTPTPCSTSQPTKYSGAARLSSPCKMIGQSFSDCLIKRQLRHKSIGRGGCALAVIRPHR Same 519515 chr17:48626433-48626546+ 19522 19522 -1278 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.517543859649 0.786206896552 -2.7856 0.9447 -5.66435789474 2.87875789474 -0.013836827294 0.623855147721 49770 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -9.76086315789 0.7904 -14.4323368421 4.67147368421 0.012291986338 0.637586402465 29821 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000567101.2 AntiNCintron not annotated putative regulatory region 18250 479923 chr10:8045434-8045466- NoOverlap chr10 8045434 8045466 - 7.60485442254 11 0.96752741422 1.69569988684 5.90915453569 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8045433;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8045434-8045466-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8045434-8045466&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.194363161398 0.168218250034 0.828729263984 8087397 8087429 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8087396;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8045434-8045466-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8087397-8087429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LARRSEGRNDR Same 481831 chr10:8045434-8045466- 18505 18505 -255 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575757575758 0.75 4.20870909091 0.9664 -3.69073636364 7.89944545455 0.159194647727 0.868174124441 10954 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 2.26513636364 0.4988 -7.53735454545 9.80249090909 0.104897552564 0.724750609372 11067 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 not annotated putative regulatory region 18280 479627 chr10:129854788-129854823+ NoOverlap chr10 129854788 129854823 + 7.83390843868 12 0.831815060655 4.296866633 3.53704180568 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129854787;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129854788-129854823%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129854788-129854823&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.276650765018 0.167863816308 0.563189163396 131653052 131653087 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131653051;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129854788-129854823%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131653052-131653087&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVFSSQSQYFAAFLINFSINLAMNFNHSTRQGEPGIVVCTGSTK Same 481532 chr10:129854788-129854823+ 17444 17444 836 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.444444444444 2.44645833333 0.9924 2.367825 0.0786333333333 0.00816421684043 0.252601255691 37593 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -1.09573333333 0.8709 -7.41640833333 6.320675 0.0310703701115 0.593481672026 23432 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 18288 535054 chr2:131355599-131355781+ NoOverlap chr2 131355599 131355781 + 3.70411476542 61 0.229007400626 0.313898370403 3.39021639501 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131355598;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131355599-131355781%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131355599-131355781&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0977394120028 0.167799413997 0.87793529988 132113172 132113354 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;132113171;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131355599-131355781%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A132113172-132113354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLDDAVIDEITPKLIRDPPNSCTYSKALGEMVVQQESRNLTIAIIRPSTVGATWHDPFPVSPLTWILCFASK Same 536407 chr2:131355599-131355781+ 17149 17149 1139 0 11733 131355599 131355781 Best 18288 18288 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131355599-131355781&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.546448087432 0.442028985507 14.7637163934 0.6818 3.51184262295 11.2518737705 1.13912770492 1.03274484932 2 Best 2 2 44.4321032787 0.8849 9.16022131148 35.2718819672 0.96875276119 0.983654455993 1586 Best 1586 1586 0.916160110294 chr12:29307658-29307835+ 0.793161902867 chr12:29307658-29307835+ pseudogene FAR2 pseudogene (ENSG00000284706); found after looking at high-scoring intergenic PCCRs 18295 586812 chr8:60793006-60793155- NoOverlap chr8 60793006 60793155 - 2.44286210775 50 1.0 0.102345997095 2.34051611066 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;60793005;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A60793006-60793155-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A60793006-60793155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.206641888871 0.167711933734 0.724002798162 61705565 61705714 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;61705564;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A60793006-60793155-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A61705565-61705714&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSISSIYFRSNCHKLYNTTAEHWAPFLSSARQEQSDYPGNQRSHDQHLLFWLDATD Same 587753 chr8:60793006-60793155- 18288 18288 7 0 615 60792790 60793155 943 943;7038;18295;58454 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:60792790-60793155&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.493333333333 0.360576923077 -1.646112 0.9999 -3.089526 1.443414 0.0415226210813 0.530353828856 25144 4570 4570;12228;13553;25144 -6.53044 0.8459 -6.327824 -0.202616 0.00495608880347 0.473479111364 32971 6888 6888;10907;32971;41586 0.0 0.0 ENST00000423902.6,ENST00000527900.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 18339 578137 chr7:57169000-57169044+ NoOverlap chr7 57169000 57169044 + 6.90968001286 15 0.339107347219 -6.07891326845 12.9885932813 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57168999;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57169000-57169044%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57169000-57169044&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0170095399439 0.167192951727 0.995081856833 57236707 57236751 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57236706;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57169000-57169044%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57236707-57236751&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALQTSNLTLTNSTALILVIILVLGLTDE Same 579176 chr7:57169000-57169044+ 16925 16925 1414 0 244 57167069 57169403 311 311;1064;1719;18339;30405;36290 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57167069-57169403&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.355555555556 0.0 4.24132 0.3628 -10.4649666667 14.7062866667 0.0774682554068 1.04898364188 18611 1605 1605;1729;3056;18611;18962;23881 32.3599666667 0.7924 -23.8965266667 56.2564933333 0.946250747156 0.993240362063 1843 484 484;596;1739;1843;2085;2580 0.77496661709 chrM:10059-10404+ 0.936967540336 chrM:10059-10404+ pseudogene MTCO3P10 mitochondrially encoded cytochrome c oxidase III pseudogene 10 (ENSG00000231537) 18349 519571 chr17:81181609-81181668+ NoOverlap chr17 81181609 81181668 + 4.09641007185 20 0.543886472877 -2.26701998338 6.36343005523 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;81181608;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A81181609-81181668%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A81181609-81181668&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0374693497955 0.16707288551 0.974646972153 79155409 79155468 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;79155408;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A81181609-81181668%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A79155409-79155468&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHASGQLDDAIHTAFQSLDKDKSGFIEWNEIK Same 520975 chr17:81181609-81181668+ 18927 18927 -578 0 5269 81181263 81182071 7315 7315;9975;18349 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:81181263-81182071&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.672268907563 5.533325 0.8119 -5.014055 10.54738 0.428682752687 1.04521235539 3712 2180 2180;2603;3712 7.24186 0.5213 -9.25696 16.49882 0.567005465371 0.995675573185 3277 2288 2288;3208;3277 0.0 0.0847780002828 chr10:98431131-98431291- ENST00000414089.5 NC protein-coding gene protein coding gene ENSG00000225180 18412 496184 chr12:70445910-70445942- NoOverlap chr12 70445910 70445942 - 8.87512711503 11 0.449461425886 -6.10474525798 14.979872373 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70445909;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70445910-70445942-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70445910-70445942&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.078376431108 0.16647196636 0.977344479728 70839690 70839722 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70839689;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70445910-70445942-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70839690-70839722&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HHPLYITHIRSHSGLPGPCQK Same 498184 chr12:70445910-70445942- 16393 16393 2019 0 155 70445357 70448659 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.545454545455 0.458333333333 6.37225454545 0.1647 -1.90536363636 8.27761818182 0.0476455350423 0.884874086232 23676 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 25.8314545455 0.198 -0.719909090909 26.5513636364 0.259090150261 1.03446126232 5094 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 18460 482375 chr10:117551523-117551600- NoOverlap chr10 117551523 117551600 - 4.45185771814 26 0.920607309071 3.63279614082 0.81906157732 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117551522;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551523-117551600-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117551523-117551600&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.409761339909 0.16590380251 0.387005208525 119311034 119311111 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119311033;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551523-117551600-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119311034-119311111&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRKDSKVRQICLQWIKASRLCFTFFILIPT Same 484302 chr10:117551523-117551600- 18476 18476 -16 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.512820512821 0.977443609023 -1.48622692308 0.9965 -0.457523076923 -1.02870384615 -0.045925557174 0.252598876342 69617 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -7.57738461538 0.8638 -4.56493461538 -3.01245 -0.0492755252166 0.290537107581 71052 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 not annotated putative regulatory region 18502 558844 chr4:41748419-41748457+ NoOverlap chr4 41748419 41748457 + 6.77170768609 13 0.860593575952 2.2132922411 4.558415445 ENST00000226382.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41748418;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748419-41748457%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41748419-41748457&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.244596331788 0.165515354426 0.71955063562 41750436 41750474 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41750435;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748419-41748457%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41750436-41750474&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TALVVPEGAQAAGSRREGRAAGRGPK Same 559827 chr4:41748419-41748457+ 17618 17618 884 0 2000 41745545 41752242 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.769230769231 0.722222222222 -3.02043076923 0.9885 -6.05997692308 3.03954615385 -0.0447867744101 0.513919243088 69096 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 -22.6150923077 0.9722 -32.1271615385 9.51206923077 -0.0230770749947 0.496081983046 50766 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0 ENST00000508038.1,ENST00000226382.3 NC,AntiCDS not annotated putative regulatory region 18528 518071 chr17:48597884-48597925+ NoOverlap chr17 48597884 48597925 + 6.6660572333 14 0.941802090486 3.189092932 3.4769643013 ENST00000225648.3,ENST00000484302.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48597883;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48597884-48597925%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48597884-48597925&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.280687905678 0.165291861012 0.599484912258 46675246 46675287 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46675245;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48597884-48597925%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46675246-46675287&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLLVGAGECAGRLFLAVEGRRRPVVAGR Same 519472 chr17:48597884-48597925+ 18860 18860 -332 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.714285714286 1.3125 -3.08236428571 0.9623 -4.69308571429 1.61072142857 -0.0466013232231 0.403157985353 69874 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -20.8068428571 0.8797 -30.0573642857 9.25052142857 -0.0311115156139 0.530602274347 58132 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000225648.3,ENST00000552000.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 18550 548081 chr22:21469278-21469355+ NoOverlap chr22 21469278 21469355 + 4.89853835106 26 0.445875075562 1.06153466954 3.83700368152 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21469277;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21469278-21469355%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21469278-21469355&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.091475046778 0.165017668753 0.780348635335 21823567 21823644 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21823566;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21469278-21469355%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21823567-21823644&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CDGQLRGVQYSTESLMEEMARADRVSACAGPGGVGWSGTTLPVPPAVPPPPPPGNR Same 549501 chr22:21469278-21469355+ 19140 19140 -590 0 857 21467445 21469818 1328 1328;2227;3023;6657;7795;18550;21659 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21467445-21469818&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.958525345622 4.47631153846 0.7435 -2.24031538462 6.71662692308 0.312485603076 0.921631560204 5351 1035 1035;1287;1331;1719;1904;4183;5351 0.0875115384615 0.5137 -4.25997307692 4.34748461538 0.126311863396 0.6117434555 9390 2446 2446;2467;2733;2842;3549;4935;9390 0.492868060194 chr22:18529936-18530008+ 0.888430585976 chr22:18529936-18530008+ ENST00000425458.5 NC protein-coding gene protein coding gene ENSG00000206140 18552 490521 chr12:6672418-6672450+ NoOverlap chr12 6672418 6672450 + 6.63763637976 11 0.892360085173 -0.621963538907 7.25959991867 ENST00000361959.7,ENST00000396801.7,ENST00000417772.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;6672417;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A6672418-6672450%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A6672418-6672450&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.116641253447 0.165008525158 0.953604929862 6781584 6781616 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;6781583;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A6672418-6672450%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A6781584-6781616&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSPLPCVLLEVGELAEGLLAVGTVVGLGPRVDTEVLGQVGGVGEGLGAVR Same 492497 chr12:6672418-6672450+ 17650 17650 902 0 12 6667963 6700148 12 12;12158;18552;20045;33854;38909;39562;56088 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:6667963-6700148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.727272727273 0.488888888889 -1.5115 0.9844 -6.16529090909 4.65379090909 -0.0335826524548 0.63125419923 62765 2774 2774;6809;9420;13385;14558;25605;62765;71889 -14.4033636364 0.9932 -20.4737909091 6.07042727273 -0.0469172336775 0.499357091393 69914 3069 3069;6299;29969;40306;41399;41916;69914;73517 0.0 0.0 ENST00000361959.7,ENST00000537383.1,ENST00000319770.7 AntiCDS,AntiNC,AntiCDSintron not annotated potentially spurious 18584 497296 chr12:121053873-121053899- NoOverlap chr12 121053873 121053899 - 7.2835554017 9 0.66259250782 -4.87656686041 12.1601222621 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;121053872;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121053873-121053899-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A121053873-121053899&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0060372271617 0.164583665203 1.02882349186 121491676 121491702 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;121491675;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A121053873-121053899-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A121491676-121491702&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELVHCSKSLAYNITVVR Same 499308 chr12:121053873-121053899- 19069 19069 -485 0 1146 121053768 121059655 1742 1742;3390;7126;9195;12027;15420;18584 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:121053768-121059655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.0 5.27057777778 0.6127 -7.60135555556 12.8719333333 0.103949706096 1.02957959325 15430 2783 2783;4174;4538;6046;10102;15430;23561 15.1774111111 0.3352 -12.3261111111 27.5035222222 0.28891989593 1.05332626028 4741 2866 2866;2878;4226;4741;5525;5554;8163 0.0 0.336534354229 chr12:121033461-121033743- pseudogene unitary pseudogene, orthlog of mouse 2'-5' oligoadenylate synthetase-like 2 (Oasl2) (ENSG00000283542) 18586 574031 chr6:19804902-19804943- NoOverlap chr6 19804902 19804943 - 6.57667851448 14 0.704457814254 1.57564290014 5.00103561434 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;19804901;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A19804902-19804943-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A19804902-19804943&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.197773709058 0.164568000981 0.784403411383 19805133 19805174 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;19805132;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A19804902-19804943-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A19805133-19805174&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSRRIPAPSSRAPRCAASPGQLIHWLGRPDCLAPAA Same 575060 chr6:19804902-19804943- 18958 18958 -372 0 1616 19804719 19804943 2401 2401;18586 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:19804719-19804943&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.761904761905 1.09090909091 -2.69729285714 0.7545 -0.330057142857 -2.36723571429 -0.00174567139763 0.119077245965 42383 8968 8968;42383 -9.48265714286 0.4483 -4.32679285714 -5.15586428571 -0.0161460248838 0.161484744477 45182 6334 6334;45182 0.0 0.0 ENST00000432171.2 NCintron not annotated putative regulatory region 18597 546546 chr21:26170800-26170868+ NoOverlap chr21 26170800 26170868 + 5.16026507512 23 0.693835686872 3.23779993213 1.922465143 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;26170799;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A26170800-26170868%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A26170800-26170868&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.320614724314 0.164464498991 0.505586999899 27543118 27543186 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;27543117;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A26170800-26170868%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A27543118-27543186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARRVS*SGPPRSAPERDP*RRRR Same 547962 chr21:26170800-26170868+ 18945 18945 -348 10 1496 26169453 26170881 2228 2228;14589;18597;43146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:26169453-26170881&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.768115942029 0.9 -1.41402173913 0.8324 -3.65329130435 2.23926956522 -0.0221045677383 0.516662094287 55552 8395 8395;15566;16161;55552 -2.82734347826 0.436 -10.3311521739 7.50380869565 0.1030091164 0.721584499671 11231 7036 7036;7352;11231;16407 0.0 0.0 ENST00000455275.1,ENST00000359726.7 NCintron,AntiUTR5intron not annotated putative regulatory region 18618 563465 chr5:113239-113412+ NoOverlap chr5 113239 113412 + 2.92263971269 58 0.278200382528 -1.11586030258 4.03850001527 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;113238;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A113239-113412%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A113239-113412&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0489215826773 0.164299340825 0.934275095912 113354 113527 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;113353;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A113239-113412%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A113354-113527&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSEFSLSFQDLESLDACIQRTLSALYPPFEATAATVLWQLFSVAERCHGGDGLHCLTSFLLPAK Same 564453 chr5:113239-113412+ 16712 16712 1906 0 11909 113239 113412 Best 18618 18618 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:113239-113412&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.609195402299 0.5 4.37171724138 0.3271 -1.8644862069 6.23620344828 0.3100086377 0.996293456702 5396 Best 5396 5396 41.5530465517 0.7744 5.77606034483 35.7769862069 0.951934041051 0.982924911964 1806 Best 1806 1806 0.0 0.403562808917 chr14:21073045-21073242+ ENST00000512035.1 NC coding exon(s) PLEKHG4B 5' extended. This CDS was not subject to further analysis as it was reclassified as coding once this work was completed. 18675 539832 chr2:110025524-110025556- NoOverlap chr2 110025524 110025556 - 7.78087258339 11 0.562337959591 -1.51389987089 9.29477245428 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110025523;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025524-110025556-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110025524-110025556&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0866035993528 0.163673960549 1.03109676339 110783101 110783133 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110783100;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025524-110025556-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110783101-110783133&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEGSPCSAGTPATQACPSGHYCPGGSETHSGAPQACPEHTYLATDGGHSQAECLPCPAGYHCPWPGK Same 541192 chr2:110025524-110025556- 19556 19556 -881 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.69696969697 0.0 15.1935636364 0.8072 1.57077272727 13.6227909091 0.402482995586 1.00954726927 3977 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 29.6098909091 0.682 -1.07065454545 30.6805454545 0.985561876698 1.04286386069 1337 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 18685 482362 chr10:117543413-117543442- NoOverlap chr10 117543413 117543442 - 6.92827994823 10 0.918420691234 -0.989710140228 7.91799008846 ENST00000442245.5,ENST00000553456.4 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117543412;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117543413-117543442-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117543413-117543442&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0818859251728 0.163580543123 0.981642553063 119302924 119302953 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119302923;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117543413-117543442-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119302924-119302953&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRRRRPSGSR Same 484289 chr10:117543413-117543442- 17816 17816 869 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 1.45833333333 -11.2372 0.8423 -13.0056 1.7684 0.054984316541 0.463218985365 22156 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -20.89126 0.6553 -20.40581 -0.48545 0.0283472015668 0.213902019044 24261 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000551288.5,ENST00000442245.5 NCintron,AntiCDS not annotated putative regulatory region 18695 502025 chr14:73612685-73612723+ NoOverlap chr14 73612685 73612723 + 7.25038457834 13 0.727397573816 2.82221541955 4.42816915879 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;73612684;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73612685-73612723%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A73612685-73612723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.228757743528 0.163477145521 0.697377753292 74079389 74079427 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;74079388;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73612685-73612723%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A74079389-74079427&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SARPGPGAASHAAHVPARRRGRALPGPRALPCR Same 503927 chr14:73612685-73612723+ 18695 18695 0 0 238 73612572 73617174 305 305;369;18695;18948;54211;63382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:73612572-73617174&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.794871794872 1.4625 -5.38858461538 0.9196 -9.02583076923 3.63724615385 -0.0304777004717 0.561713668405 60824 503 503;685;4788;45597;60715;60824 -52.5726923077 0.9273 -40.9305692308 -11.6421230769 -0.0972023437911 0.0893446332174 73789 1326 1326;1373;1540;31312;62655;73789 0.468174424491 chr14:73591960-73592416+ 0.445263622157 chr14:73591960-73592416+ ENST00000554229.1 UTR5intron pseudo-exon ACOT6 untranscribed pseudo-exon 18732 543796 chr20:49318436-49318561+ NoOverlap chr20 49318436 49318561 + 4.19506428107 42 0.329425207178 1.05265711887 3.1424071622 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;49318435;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49318436-49318561%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A49318436-49318561&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0739191040367 0.163083297098 0.79969781445 47934973 47935098 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;47934972;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49318436-49318561%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A47934973-47935098&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPLGVLLPWQGSAALGRCCPGRDPMFVARGPPRCFCDQACGAARRGTAAQTIR Same 545187 chr20:49318436-49318561+ 19362 19362 -630 0 1366 49318436 49340428 2047 2047;3687;18732;36370;50172;50543;57104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:49318436-49340428&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.785714285714 1.08 0.818888095238 0.4831 -1.29515952381 2.11404761905 0.0102686093948 0.616638298469 36672 3238 3238;3385;16849;16867;36672;53077;54154 2.62641904762 0.3233 -1.48547857143 4.11189761905 0.171120249935 0.667229247476 7110 70 70;869;3100;3618;7110;19303;47365 0.0 0.00651865270421 chr10:133272957-133273019- pseudogene somatomedin B and thrombospondin type 1 domain containing (SBSPON) transcribed_unprocessed_pseudogene (ENSG00000283529) 18768 476795 chr10:14842801-14842830+ NoOverlap chr10 14842801 14842830 + 6.58412003517 10 0.919401846342 -1.63029022515 8.21441026032 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;14842800;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14842801-14842830%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A14842801-14842830&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0466629389372 0.162672657807 0.999580178673 14884800 14884829 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;14884799;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A14842801-14842830%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A14884800-14884829&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETSDLEDSWDESSGAGNSQACEGVGSQSLVALNI Same 478689 chr10:14842801-14842830+ 18056 18056 712 0 39 14838293 14843891 43 43;332;2288;5649;18768 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:14838293-14843891&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.0 6.94165 0.9882 1.02457 5.91708 0.225315530537 0.706250762833 7784 141 141;644;2902;7592;7784 8.91748 0.3807 2.18531 6.73217 0.0956854154686 0.575765589451 11944 1661 1661;2005;4606;11944;25459 0.0 0.0 ENST00000493863.5,ENST00000378372.7 NC,CDSintron protein-coding gene protein-coding gene ENSG00000284024 18790 481139 chr10:75708261-75708368- NoOverlap chr10 75708261 75708368 - 2.59549995098 36 0.985528513178 -0.87585276862 3.4713527196 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75708260;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75708261-75708368-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75708261-75708368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.122820238645 0.162338415329 0.808108030571 77468019 77468126 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77468018;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75708261-75708368-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77468019-77468126&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IQTLCSVKNKYEKGIKIMKDCLCILA*NGNVL*EREQWRRQIDEADSVVFILR Same 483053 chr10:75708261-75708368- 20747 20747 -1957 16 1239 75708158 75708438 1870 1870;17029;18044;18790;19389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75708158-75708438&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.37037037037 0.72 -1.48804444444 0.9969 -2.35704722222 0.869002777778 -0.00274004689099 0.452271596048 42906 3862 3862;13782;42906;49661;52248 -10.0857194444 0.9299 -12.3986638889 2.31294444444 -0.0199711790036 0.529844589365 48068 5843 5843;8667;44155;48068;65299 0.0 0.0 ENST00000611255.4,ENST00000593699.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 18798 530417 chr19:18263924-18263956- NoOverlap chr19 18263924 18263956 - 9.59835451299 11 0.654763242403 6.60863616792 2.98971834508 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;18263923;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18263924-18263956-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A18263924-18263956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.242976184645 0.162260038856 0.445576023927 18374734 18374766 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;18374733;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18263924-18263956-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A18374734-18374766&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSHMQPPPSLWQPLIANCVGPSMNQPSVIYGTAPSCHRPHVVSR Same 531880 chr19:18263924-18263956- 19291 19291 -493 0 692 18236900 18263956 1071 1071;2349;2964;6293;18798;31506 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:18236900-18263956&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575757575758 0.0 20.4439 0.8964 6.27811818182 14.1657818182 0.619211272472 0.966090489205 2444 1074 1074;2068;2444;2621;2710;8481 17.0861272727 0.3592 3.36065454545 13.7254727273 0.327702236066 0.815079237335 4374 2208 2208;2924;3816;3839;4374;14268 0.0 0.127155606239 chr3:56682676-56683006- ENST00000392413.4 CDSintron protein-coding gene protein-coding gene ENSG00000284797; found after looking at high-scoring intergenic PCCRs 18821 582316 chr7:115674576-115674626- NoOverlap chr7 115674576 115674626 - 5.18637063223 17 0.915618506501 1.04470591598 4.14166471625 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;115674575;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115674576-115674626-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A115674576-115674626&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.233028849356 0.162044576791 0.732616382862 115314630 115314680 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;115314629;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115674576-115674626-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A115314630-115314680&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHTDMDSTCTAACQMPAWIK Same 583277 chr7:115674576-115674626- 18972 18972 -151 0 5672 115673834 115679526 7911 7911;18821;19702;21896;25172;45048;57068 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:115673834-115679526&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.490196078431 0.326923076923 4.39934117647 1.0 1.99442352941 2.40491764706 0.191807987017 0.491231613725 9148 Best 9148 9148;20280;33321;35228;35655;36146;49962 4.80881176471 0.8949 -0.623352941176 5.43216470588 0.17815437002 0.595672654065 6859 Best 6859 6859;16053;21757;25065;26080;28039;62910 0.0 0.0 ENST00000471672.1 NCintron not annotated potentially spurious 18828 479595 chr10:129844834-129844884+ NoOverlap chr10 129844834 129844884 + 4.77713530554 17 0.909697108415 -0.288541218814 5.06567652436 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129844833;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129844834-129844884%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129844834-129844884&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.16638912285 0.161995058758 0.83869811416 131643098 131643148 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131643097;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129844834-129844884%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131643098-131643148&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FR*PEQLSVSKIKCFSEVLIITHNLSYHIAR Same 481500 chr10:129844834-129844884+ 19051 19051 -223 2 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.450980392157 0.404761904762 1.46422352941 0.9875 0.446794117647 1.01742941176 0.0342900850386 0.37267316525 27206 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 2.85322352941 0.9251 -0.972229411765 3.82545294118 0.107513192661 0.529943634663 10824 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 18914 515955 chr17:2402086-2402115+ NoOverlap chr17 2402086 2402115 + 9.42976996899 10 0.894128328374 6.56387993097 2.86589003801 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2402085;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2402086-2402115%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2402086-2402115&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.265029482656 0.161187199676 0.415849382804 2305380 2305409 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2305379;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2402086-2402115%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2305380-2305409&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPNREQQRGGRKPGPPR Same 517331 chr17:2402086-2402115+ 18380 18380 534 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.9375 0.8369 0.9785 0.43376 0.40314 -0.0337005096824 0.267453784819 62839 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -3.31163 0.45 -5.91573 2.6041 -0.0324324066506 0.421799525647 59274 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 not annotated putative regulatory region 18927 530522 chr19:28708008-28708211- NoOverlap chr19 28708008 28708211 - 2.03890587532 68 0.367094816869 -1.36024705934 3.39915293466 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28708007;204;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28708008-28708211-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28708008-28708211&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0169476289324 0.16104708719 0.868823353885 29198915 29199118 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29198914;204;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28708008-28708211-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29198915-29199118&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DYDILEN*VPSGRDYHNLLSQCEESYSKFFNLRSSLANCSSEQENISMVEGLKLYSEIEQVKQKLKLMESPLLR Same 531986 chr19:28708008-28708211- 16203 16203 2724 7 1328 28700946 28722771 1997 1997;8891;9090;18927;37310;39699 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28700946-28722771&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.382352941176 0.140013726836 5.02506764706 0.8042 -0.936920588235 5.96198823529 0.66188963337 0.98308037106 2244 1227 1227;2244;3295;3647;4332;8998 25.6076617647 0.763 4.34204264706 21.2656191176 0.995969190346 1.03955621463 1173 214 214;954;1173;1175;1695;2440 0.809910322465 chr16:46604228-46604461- 0.977915093676 chr16:46604228-46604461- ENST00000590072.1 NCintron not annotated potentially spurious 18941 524092 chr18:26035892-26035957+ NoOverlap chr18 26035892 26035957 + 4.54830008203 22 0.892499497146 2.22189087218 2.32640920986 ENST00000415083.6,ENST00000542420.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26035891;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26035892-26035957%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26035892-26035957&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.315711843273 0.160949361197 0.554485421696 23615856 23615921 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;23615855;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26035892-26035957%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A23615856-23615921&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IRRLLITVIIMTYINSTRDRKKR Same 525528 chr18:26035892-26035957+ 18782 18782 159 0 548 26035069 26035971 832 832;4515;13026;18941 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26035069-26035971&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.424242424242 1.68367346939 0.100486363636 1.0 -1.35055 1.45103636364 0.0340756347442 0.446497725382 27273 2301 2301;9434;15794;27273 -9.39839090909 0.8468 -11.0528136364 1.65442272727 -0.0399466873223 0.443810441125 65195 3626 3626;17772;65195;68131 0.0 0.0 ENST00000415083.6,ENST00000269138.9,ENST00000269137.11,ENST00000579640.5 AntiCDS,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 18948 502026 chr14:73612736-73612783+ NoOverlap chr14 73612736 73612783 + 5.68486264162 16 0.727397573816 1.12151849736 4.56334414426 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;73612735;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73612736-73612783%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A73612736-73612783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.200475351596 0.160874024216 0.766839776377 74079440 74079487 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;74079439;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73612736-73612783%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A74079440-74079487&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPRRAGPGARARAGRQLR Same 503928 chr14:73612736-73612783+ 19097 19097 -149 0 238 73612572 73617174 305 305;369;18695;18948;54211;63382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:73612572-73617174&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8125 1.14285714286 -6.8542125 0.8877 -6.396125 -0.4580875 -0.0075189639877 0.27447296042 45597 503 503;685;4788;45597;60715;60824 -43.019725 0.9051 -41.6829875 -1.3367375 0.00862485342193 0.0640677433548 31312 1326 1326;1373;1540;31312;62655;73789 0.474218507117 chr14:73591960-73592416+ 0.446363818256 chr14:73591960-73592416+ ENST00000554229.1 UTR5intron pseudo-exon ACOT6 untranscribed pseudo-exon 18994 500705 chr14:22086679-22086708+ NoOverlap chr14 22086679 22086708 + 6.30521001816 10 0.758374914168 -3.22626006603 9.53147008419 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22086678;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22086679-22086708%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22086679-22086708&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00434841985352 0.160317406128 1.04042235353 22554956 22554985 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22554955;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22086679-22086708%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22554956-22554985&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SDQQQVKQSPQSLIVQK None NA NA 0 300 22086679 22096605 401 401;4479;18994;21810 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22086679-22096605&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 -1.36754 0.86 -4.92071 3.55317 -0.033616145401 0.531784422651 62785 1541 1541;23184;43077;62785 1.82858 0.3558 -6.10832 7.9369 0.0209363509447 0.641335528957 26667 2482 2482;8294;14730;26667 0.0 0.0 ENST00000390451.2 NC immunoglobulin segment overlaps an immunoglobulin region 18999 564845 chr5:93602441-93602485+ NoOverlap chr5 93602441 93602485 + 6.02060662905 15 0.780135805295 1.74730667075 4.27329995831 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;93602440;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93602441-93602485%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A93602441-93602485&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.231880467739 0.160298810835 0.718576425348 92938147 92938191 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;92938146;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93602441-93602485%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A92938147-92938191&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSPHWLILGAGVLERRRANEDAS Same 565833 chr5:93602441-93602485+ 18585 18585 414 0 3451 93580856 93603078 4787 4787;9346;11338;11696;13238;18999;26452;26493;26701;27232;28622;33341;37073;38483;40428;50861;66649 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:93580856-93603078&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.711111111111 1.23529411765 1.95935333333 0.9917 -10.8050933333 12.7644466667 0.329660065085 1.0613376027 5022 Best 5022 5022;8932;13700;14826;16126;17841;21763;24145;29213;36125;41771;51124;51917;55188;59615;61664;73562 -7.64152666667 0.4953 -27.6900533333 20.0485266667 0.187071704629 1.02790403027 6596 5814 5814;6596;9096;16343;18747;24073;27385;33273;39453;40451;41327;42891;44550;46827;53732;65452;67088 0.0 0.0 ENST00000623223.1 NC not annotated potentially spurious 19021 518099 chr17:48615234-48615278+ NoOverlap chr17 48615234 48615278 + 6.82276010513 15 0.738944584319 4.19970672528 2.62305337985 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48615233;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48615234-48615278%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48615234-48615278&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.290965166767 0.160034713174 0.498689692443 46692596 46692640 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46692595;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48615234-48615278%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46692596-46692640&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQSEGESERERARERARARERQGVR Same 519500 chr17:48615234-48615278+ 18836 18836 185 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.622222222222 1.22448979592 -1.00293333333 0.8377 0.839753333333 -1.84268666667 -0.025365850874 0.147263433675 57658 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -11.1952466667 0.6727 -8.2654 -2.92984666667 -0.0336379103604 0.230018017376 60334 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000567101.2 AntiNCintron not annotated putative regulatory region 19027 577681 chr7:27150950-27150991+ NoOverlap chr7 27150950 27150991 + 7.17205005778 14 0.864575090737 5.69026436125 1.48178569653 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27150949;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27150950-27150991%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27150950-27150991&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.339888351948 0.159945999878 0.334530282997 27190569 27190610 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27190568;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27150950-27150991%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27190569-27190610&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQEAGCSWRRSRRRPRRGSSER Same 578720 chr7:27150950-27150991+ 18736 18736 291 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.809523809524 1.17894736842 -7.77805714286 0.9267 -6.93667857143 -0.841378571429 0.00859375817215 0.258017762605 37407 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -13.5063785714 0.3968 -10.3354571429 -3.17092142857 0.000341527443123 0.208007265183 35178 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000524304.1,ENST00000518848.5,ENST00000467897.2 NC,NCintron,AntiNCintron not annotated putative regulatory region 19080 540701 chr2:161266080-161266178- NoOverlap chr2 161266080 161266178 - 4.01513321472 33 0.839071419158 3.50790900082 0.507224213896 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;161266079;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A161266080-161266178-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A161266080-161266178&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.450494263376 0.159540760265 0.396351446184 162122591 162122689 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;162122590;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A161266080-161266178-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A162122591-162122689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YQLVFTFSALRIVILFSAHRASARVHAPIRHQED Same 542067 chr2:161266080-161266178- 19666 19666 -586 0 12128 161266080 161266178 Best 19080 19080;30339 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:161266080-161266178&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.535353535354 1.00434782609 0.816621212121 0.9998 1.71847878788 -0.901857575758 0.0465185244585 0.302406789419 23932 Best 23932 23932;52342 -0.691396969697 0.5489 -0.776533333333 0.0851363636364 0.0532243321961 0.459883740739 18077 Best 18077 18077;39998 0.0 0.0 ENST00000435692.6,ENST00000628617.2 NC,NCintron not annotated potentially spurious 19091 544151 chr20:58854210-58854257+ NoOverlap chr20 58854210 58854257 + 6.05322500318 16 0.777203021286 2.92259995639 3.13062504679 ENST00000306120.3,ENST00000371099.6,ENST00000371100.8,ENST00000371102.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;58854209;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58854210-58854257%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A58854210-58854257&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.278377010097 0.159430849654 0.585932376987 57429265 57429312 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;57429264;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58854210-58854257%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A57429265-57429312&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DWQRPRWGRRHSRQHGQPPNR Same 545542 chr20:58854210-58854257+ 18712 18712 379 0 305 58839591 58856213 410 410;1778;7945;12986;19091;20890;24880;65020;71495 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:58839591-58856213&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.0 -5.287425 0.9884 -5.45784375 0.17041875 -0.0492723363204 0.307326746438 70767 115 115;1018;3966;4263;7912;16426;32661;49033;70767 -11.7809125 0.5729 -14.76391875 2.98300625 -0.0403631289178 0.443767700136 65521 366 366;3178;7236;8695;17364;24762;29540;46544;65521 0.0 0.0962041781169 chr22:41176773-41178956+ ENST00000306120.3,ENST00000464624.6,ENST00000313949.11,ENST00000462499.5 CDS,NC,UTR3intron,NCintron coding exon(s) GNAS cassette exon 19116 557407 chr3:164020478-164020513- NoOverlap chr3 164020478 164020513 - 8.78744161626 12 0.378348719514 -3.50760005911 12.2950416754 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;164020477;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164020478-164020513-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A164020478-164020513&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0541545894919 0.159102662139 1.02482702084 163738266 163738301 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;163738265;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164020478-164020513-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A163738266-163738301&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PPPDSQLGAYLPTLSLIHHLLR Same 558376 chr3:164020478-164020513- 18385 18385 731 0 515 164020256 164021752 771 771;1003;8769;19116;25346;28404;49038 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:164020256-164021752&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.0 -1.41889166667 0.0261 -3.69208333333 2.27319166667 0.039152682852 0.44164428959 25790 19419 19419;24940;25790;26229;28407;40126;56143 -1.41889166667 0.0082 -3.69208333333 2.27319166667 0.0117964680991 0.426223367101 30001 13932 13932;30001;32108;33417;45789;56644;69776 0.0 0.0 not annotated fragments of a reteroviral ORF 19129 561548 chr4:41879383-41879442- NoOverlap chr4 41879383 41879442 - 4.1734551847 20 0.822862592508 -0.271950018406 4.4454052031 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41879382;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41879383-41879442-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41879383-41879442&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.169652090287 0.158980564334 0.803404387088 41881400 41881459 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41881399;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41879383-41879442-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41881400-41881459&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVLCAAHLLVMDGYEDLPILLSVIQSNKVNIYCIYIKNYPGIEWRR Same 562539 chr4:41879383-41879442- 18851 18851 278 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.366666666667 2.0 -2.288345 0.9527 -4.44623 2.157885 -0.0363624403422 0.486816986663 64506 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -9.75052 0.8993 -9.44259 -0.30793 -0.0470433203688 0.354633081019 69989 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 ENST00000504870.1 NCintron not annotated putative regulatory region 19139 530517 chr19:28683249-28683329- NoOverlap chr19 28683249 28683329 - 4.53989635684 27 0.55282193004 1.47223714325 3.06765921359 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28683248;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28683249-28683329-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28683249-28683329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.162147865056 0.158869859156 0.695637974451 29174156 29174236 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29174155;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28683249-28683329-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29174156-29174236&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VDPEELMQCAPAKMEFYARSDLSEQVEGNCK Same 531981 chr19:28683249-28683329- 19832 19832 -693 0 627 28683074 28687844 962 962;19139;33342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28683074-28687844&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.0 5.41951481481 0.7298 -2.25789259259 7.67740740741 0.406703939059 0.980248659594 3937 2512 2512;3937;6495 -6.45992962963 0.6054 -15.5737777778 9.11384814815 0.120012746996 0.793268925848 9825 1113 1113;2292;9825 0.787877715576 chr16:46581729-46582054- 0.958955954058 chr16:46581729-46582054- ENST00000592347.5 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 19141 478895 chr10:113119039-113119089+ NoOverlap chr10 113119039 113119089 + 4.7916588082 17 0.920721302941 -0.218247133143 5.00990594135 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113119038;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119039-113119089%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113119039-113119089&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.165809064768 0.158857399911 0.832859499583 114878798 114878848 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114878797;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119039-113119089%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114878798-114878848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CHSFLPIFGLLIDVFDVSKKIEENVMCEPVRK Same 480796 chr10:113119039-113119089+ 19618 19618 -477 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.411764705882 0.566666666667 0.588323529412 0.9984 -0.0489235294118 0.637247058824 0.00846042337726 0.340917852449 37467 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 0.632064705882 0.9304 -0.809423529412 1.44148823529 0.0380088841769 0.430617469476 21490 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 19147 527309 chr19:12806492-12806530+ NoOverlap chr19 12806492 12806530 + 6.17689227542 13 0.644052796216 -1.26279222421 7.43968449963 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12806491;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12806492-12806530%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12806492-12806530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0862336868377 0.158788447324 0.98401254723 12917306 12917344 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12917305;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12806492-12806530%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12917306-12917344&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DYNSQEGARQRRRRRLRKRPR Same 528755 chr19:12806492-12806530+ 20334 20334 -1187 0 96 12775496 12806530 113 113;1182;3126;12882;12916;19147;21814;28171;30495;34266;70783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12775496-12806530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.74358974359 1.72058823529 11.4774307692 0.913 1.62381538462 9.85361538462 0.487975454082 0.9564174635 3224 845 845;1545;3224;5434;8474;11177;11868;16562;28502;47510;67609 10.1859692308 0.36 3.41345384615 6.77251538462 0.16238754923 0.6029359742 7449 40 40;3058;6466;7449;7608;8225;15095;31105;55016;67420;71961 0.0 0.0 ENST00000589765.1 AntiNCintron not annotated putative regulatory region 19158 558846 chr4:41748687-41748743+ NoOverlap chr4 41748687 41748743 + 4.18238944756 19 0.887006942855 -0.758957963241 4.9413474108 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41748686;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748687-41748743%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41748687-41748743&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.141365870547 0.158693895105 0.847422017401 41750704 41750760 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41750703;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748687-41748743%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41750704-41750760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DGYGEGGWSGEMCTAQRLPPNWPPYYQQSLVL Same 559829 chr4:41748687-41748743+ 19139 19139 19 0 2000 41745545 41752242 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.578947368421 0.22619047619 -1.07465789474 1.0 -2.47868421053 1.40402631579 -0.0143266667359 0.418929529958 50122 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 -9.36311578947 0.9119 -6.81156315789 -2.55155263158 -0.0475377117445 0.26936184363 70270 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0 ENST00000508038.1,ENST00000226382.3 NCintron,AntiUTR5 not annotated putative regulatory region 19164 486192 chr11:117354932-117354982+ NoOverlap chr11 117354932 117354982 + 4.70927658151 17 0.881357514395 -0.390270531178 5.09954711269 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;117354931;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117354932-117354982%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A117354932-117354982&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.159269289952 0.158598732989 0.842646909727 117225648 117225698 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;117225647;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117354932-117354982%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A117225648-117225698&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETQPEEGLLPPSSFLCSLSPPSAPGLADLDLDQEMQAISEGSYNK Same 488151 chr11:117354932-117354982+ 18944 18944 220 0 347 117354932 117356374 476 476;2729;7100;15490;19164;22431 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:117354932-117356374&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.56862745098 0.25 4.59893529412 0.9789 -1.24305294118 5.84198823529 0.28748875418 0.785806216931 5930 650 650;1071;2341;2829;3370;5930 5.53724117647 0.5572 -2.15121176471 7.68845294118 0.247577938458 0.687968290498 5242 1307 1307;2765;2996;3723;3958;5242 0.0 0.0 ENST00000278935.7 CDSintron coding exon(s) CEP164 cassette exon 19244 549539 chr22:21013042-21013083- NoOverlap chr22 21013042 21013083 - 6.43679280153 14 0.655895977068 0.791078729289 5.64571407224 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21013041;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21013042-21013083-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21013042-21013083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.151896720198 0.157833281556 0.8526015533 21367331 21367372 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21367330;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21013042-21013083-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21367331-21367372&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCWIHSIVPIFCFLCQGSAPELNLLHGGLGPQVPLEGHWVQAYR Same 550896 chr22:21013042-21013083- 20117 20117 -873 0 122 21011391 21013083 147 147;1701;4461;19244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21011391-21013083&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.738095238095 0.175 6.55705714286 0.9018 -7.22487857143 13.7819357143 0.417928556175 1.04902593905 3817 445 445;1499;1647;3817 9.75778571429 0.4479 -8.36819285714 18.1259785714 0.457690149149 0.989362822841 3696 542 542;1095;2798;3696 0.835248889921 chr22:21047356-21047498+ 0.68599043908 chr22:21047356-21047498+ ENST00000292748.7,ENST00000422086.5,ENST00000591411.5 NC,NCintron,AntiNCintron pseudogene TUBA3FP transcribed unprocessed pseudogene (ENSG00000161149) 19248 481119 chr10:75405182-75405280- NoOverlap chr10 75405182 75405280 - 3.43333632296 33 0.777750496496 1.29307278223 2.14026354073 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75405181;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75405182-75405280-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75405182-75405280&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.278412830114 0.157803323745 0.620495758525 77164940 77165038 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77164939;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75405182-75405280-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77164940-77165038&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLIERLRRARDEREAAVKGGPPALRPQY*LAISTVNSSR Same 483033 chr10:75405182-75405280- 19871 19871 -623 6 3027 75401238 75417825 4228 4228;6685;19248;23964;26231;42519;58489;66465;71052;72621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75401238-75417825&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.636363636364 0.997983870968 0.0450181818182 1.0 0.133345454545 -0.0883272727273 0.0339851678512 0.368681301206 27311 9680 9680;11699;11870;23869;27311;40902;43730;53944;63556;72593 -4.4691 0.9292 -6.27778787879 1.80868787879 0.0343446352694 0.524812562387 22472 8483 8483;11906;14750;22472;22714;29979;35309;42843;42916;72930 0.0 0.0 ENST00000425916.4 AntiNCintron not annotated putative regulatory region 19273 534726 chr2:110336260-110336310+ NoOverlap chr2 110336260 110336310 + 3.72754110571 17 0.499092985787 -5.10073524407 8.82827634978 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110336259;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110336260-110336310%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110336260-110336310&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00320383993177 0.157578062787 1.05223037298 111093837 111093887 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111093836;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110336260-110336310%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111093837-111093887&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VEYCQPCHLGAFCGKAGLAEPQGLCHPGHHCGPGSNTSSLVSAGPIRPSQGR Same 536078 chr2:110336260-110336310+ 17818 17818 1455 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.686274509804 0.0 8.57488235294 0.6352 -3.66803529412 12.2429176471 0.399103742221 1.04957283884 4022 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 25.5429941176 0.6303 -6.39239411765 31.9353882353 1.00007732942 1.04106370265 1109 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 19286 574581 chr6:34235466-34235546- NoOverlap chr6 34235466 34235546 - 5.19675924739 27 0.409922885425 1.80861479265 3.38814445475 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34235465;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34235466-34235546-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34235466-34235546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0903284419246 0.157461643881 0.733408174214 34203243 34203323 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34203242;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34235466-34235546-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34203243-34203323&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGGPSPHPCGGKRSGPGQHVLDRVGAGAPGREGARGR Same 575613 chr6:34235466-34235546- 20085 20085 -799 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.827160493827 0.818181818182 -1.3550962963 0.6102 -3.62918518519 2.27408888889 -0.0383261199826 0.543430205763 65608 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -6.14100740741 0.2878 -6.75668888889 0.615681481481 -0.0447294637849 0.442448787842 68550 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.030788652183 chr6:122789347-122789458+ protein-coding gene protein-coding gene ENSG00000186577 19289 556704 chr3:125014720-125014746- NoOverlap chr3 125014720 125014746 - 8.70039992862 9 0.578820477607 -7.02397791545 15.7243778441 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;125014719;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A125014720-125014746-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A125014720-125014746&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0655426049288 0.157426949523 0.968600307697 124733564 124733590 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;124733563;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A125014720-125014746-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A124733564-124733590&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVTLTNTSMSTTSGEAGSPAAAMHQETEGASLHVNVTDDMGLVSRSLAASSALGGGVSSTVSFNTSLQLIY Same 557673 chr3:125014720-125014746- 16867 16867 2422 0 520 125014720 125014926 776 776;19289;33579 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:125014720-125014926&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.701298701299 11.6802666667 0.817 -10.6782777778 22.3585444444 0.304428848251 0.959163935933 5514 1326 1326;5514;42047 9.09611111111 0.3219 -14.9835666667 24.0796777778 0.20935127308 1.0504113068 6004 2620 2620;6004;42528 0.0 0.0 ENST00000477536.1,ENST00000311127.8 NC,CDSintron coding exon(s) HEG1 cassette exon 19389 481141 chr10:75708406-75708438- NoOverlap chr10 75708406 75708438 - 8.13680892641 11 0.980605783169 3.75943620638 4.37737272002 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75708405;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75708406-75708438-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75708406-75708438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.232776272141 0.156556121185 0.648423057237 77468164 77468196 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77468163;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75708406-75708438-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77468164-77468196&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VKPQTRKMVECVEIM Same 483055 chr10:75708406-75708438- 20144 20144 -755 0 1239 75708158 75708438 1870 1870;17029;18044;18790;19389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75708158-75708438&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.424242424242 1.0 1.48262727273 1.0 1.26496363636 0.217663636364 -0.0136890329802 0.258694652933 49661 3862 3862;13782;42906;49661;52248 -4.29263636364 0.7274 -5.12610909091 0.833472727273 -0.0400691821798 0.358687841186 65299 5843 5843;8667;44155;48068;65299 0.0 0.0 ENST00000611255.4,ENST00000593699.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 19409 473172 chr1:90834182-90834265- NoOverlap chr1 90834182 90834265 - 3.97099648656 28 0.94690514338 2.55113565815 1.4198608284 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90834181;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90834182-90834265-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90834182-90834265&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.346150027554 0.156340136258 0.48536278139 91299739 91299822 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91299738;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90834182-90834265-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91299739-91299822&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QIKAYWGSLGAAAQPCFDFAFPQEHKMNSN Same 475051 chr1:90834182-90834265- 19610 19610 -201 0 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52380952381 0.347107438017 0.708742857143 0.9993 0.6635 0.0452428571429 0.0504544672257 0.360573796727 23052 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -5.11682142857 0.9229 -6.13358214286 1.01676071429 0.00187706731893 0.467501813674 34431 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 19512 512432 chr16:75434051-75434122+ NoOverlap chr16 75434051 75434122 + 2.92812913656 24 0.547344294397 -3.12585424259 6.05398337916 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;75434050;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A75434051-75434122%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A75434051-75434122&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00702896953958 0.155559515702 0.980135299439 75467949 75468020 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;75467948;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A75434051-75434122%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A75467949-75468020&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLDKLQSGMSYSAVGHELNVNESTIR Same 514076 chr16:75434051-75434122+ 20245 20245 -733 0 10710 75434051 75434393 16322 16322;19512;68618 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:75434051-75434393&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 0.514285714286 -1.77907083333 0.7123 -9.80299583333 8.023925 0.0833626640944 0.962858228017 17844 6381 6381;8027;17844 -1.77907083333 0.2227 -9.80299583333 8.023925 0.0587167677469 0.751311998204 17082 8776 8776;10537;17082 0.0 0.0 ENST00000621929.1,ENST00000566594.1,ENST00000561887.1 NC,AntiCDSintron,AntiNCintron not annotated potentially spurious 19517 589082 chr9:66184640-66184759+ NoOverlap chr9 66184640 66184759 + 4.24033998577 40 0.31714961471 0.909847496636 3.33049248913 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;66184639;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66184640-66184759%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A66184640-66184759&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0601542416412 0.155510535858 0.812262060444 42336618 42336499 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;42336617;-118;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66184640-66184759%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A42336618-42336499&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") *QKPSVKNTGPLEDHNWPQYFRDPCDPNPCQNDGICVNLK Different 590028 chr9:66184640-66184768+ 16859 16859 2658 1 3697 66182325 66188394 5129 5129;10383;13781;19517;25319;25601 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:66182325-66188394&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.525 0.121703853955 16.0645925 0.8781 -0.2481225 16.312715 1.05897995844 0.973867390018 165 27 27;119;165;833;1155;1409 23.7535 0.6397 -2.9726175 26.7261175 1.07028758304 1.03214529118 170 Best 170 170;536;804;927;1082;1686 0.998659129819 chr6:46835249-46835549+ 0.96211264775 chr6:46835249-46835549+ pseudogene MEP1A pseudogene (ENSG00000284706); found after looking at high-scoring intergenic PCCRs 19561 533872 chr2:66700358-66700411+ NoOverlap chr2 66700358 66700411 + 4.9013555083 18 0.97473868925 0.651988926861 4.24936658144 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;66700357;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A66700358-66700411%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A66700358-66700411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.201133404933 0.155209799538 0.75768737342 66927490 66927543 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;66927489;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A66700358-66700411%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A66927490-66927543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WELWYNQVLNLFQPLIKQGMNLKWINQAPEEAAQK Same 535256 chr2:66700358-66700411+ 21842 21842 -2281 0 4061 66695564 66700411 5616 5616;19561;59741;72084 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:66695564-66700411&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.537037037037 0.0 2.02326666667 0.9993 -1.37906666667 3.40233333333 0.125445071917 0.592548837877 13483 Best 13483 13483;24924;65088;65347 -4.62285 0.7412 -9.62785555556 5.00500555556 0.0181481753569 0.578692601339 27624 Best 27624 27624;34537;43215;50700 0.0 0.0 ENST00000412944.1,ENST00000433432.1,ENST00000432410.5 NCintron,AntiNC,AntiNCintron not annotated potentially spurious 19580 546252 chr21:8215101-8215373+ NoOverlap chr21 8215101 8215373 + 3.22449227671 91 0.387186949009 2.66231428439 0.562177992318 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8215100;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215101-8215373%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8215101-8215373&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.213597790776 0.155071483192 0.515640417845 114566 114838 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;114565;273;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215101-8215373%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A114566-114838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVGPGGRFSRGHARVPRRGGRRSERTGSAATSATHPTRLETRTKESNTCASRGLARKPPWRNEGEGRRARRPRWDPEASPVRRGRTTGPSRPPRRGGGAR Different 547666 chr21:8215113-8215373+ 15557 15557 4023 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.74358974359 1.19480645789 -0.472598901099 0.2528 -0.857303296703 0.384704395604 -0.00682735422017 0.42567999775 45174 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -2.10301098901 0.2956 -0.836805494505 -1.26620549451 0.0160936111753 0.453519158496 28343 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 19687 478481 chr10:100877282-100877428+ NoOverlap chr10 100877282 100877428 + 2.34835508466 49 0.844358288062 -0.146920399398 2.49527548406 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100877281;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100877282-100877428%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100877282-100877428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.169641350627 0.153907199989 0.740646839626 102637039 102637185 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102637038;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100877282-100877428%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102637039-102637185&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAMFQKFSVCTQSRPREGGWVRNNPAALSISPVDQC*YQEAPEDGWNRQEP Same 480376 chr10:100877282-100877428+ 19197 19197 490 13 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.544217687075 0.643125 -2.76585510204 0.9929 -4.95254285714 2.1866877551 0.00349124782709 0.57642587321 39752 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 -16.9586163265 0.8422 -18.9968530612 2.03823673469 -0.0660939647684 0.505809776216 73656 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 19702 582315 chr7:115673954-115674064- NoOverlap chr7 115673954 115674064 - 1.98805944017 37 0.902630119247 -2.25766760755 4.24572704773 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;115673953;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115673954-115674064-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A115673954-115674064&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0177633401178 0.153794965803 0.896107501148 115314008 115314118 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;115314007;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115673954-115674064-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A115314008-115314118&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVKFICPFLTGYPLCMREKRIYFSSLIYFHDSLIMTVMQVVHQN Same 583276 chr7:115673954-115674064- 19616 19616 86 0 5672 115673834 115679526 7911 7911;18821;19702;21896;25172;45048;57068 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:115673834-115679526&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.36036036036 0.280303030303 -0.740805405405 1.0 -2.54172432432 1.80091891892 0.0661048195786 0.551420548707 20280 9148 9148;20280;33321;35228;35655;36146;49962 -2.8440972973 0.9262 -4.15237837838 1.30828108108 0.0646709583528 0.522148196649 16053 6859 6859;16053;21757;25065;26080;28039;62910 0.0 0.0 ENST00000471672.1 NCintron not annotated potentially spurious 19708 530311 chr19:15428334-15428402- NoOverlap chr19 15428334 15428402 - 4.68852610562 23 0.764067657176 2.73156526555 1.95696084007 ENST00000545156.5,ENST00000599910.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15428333;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15428334-15428402-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15428334-15428402&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.317232639274 0.153750167998 0.513008022051 15539145 15539213 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15539144;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15428334-15428402-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15539145-15539213&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PRPCPPAPPGRQRSGRQGIPHRRAPRAHQEGR Same 531774 chr19:15428334-15428402- 19849 19849 -141 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.68115942029 0.878181818182 -1.90542173913 0.9996 -5.48448695652 3.57906521739 0.0165801164468 0.631314735809 33971 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -42.3664434783 0.9199 -45.9892869565 3.62284347826 0.00651001092316 0.148647506656 32260 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.128134528503 chr19:15429586-15430089- 0.141005847594 chr19:15429586-15430089- ENST00000545156.5,ENST00000263381.11 CDS,CDSintron coding exon(s) WIZ 2 cassette exons 19832 574088 chr6:21523586-21523618- NoOverlap chr6 21523586 21523618 - 6.89387280833 11 0.864143379318 0.167518115856 6.72635469247 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;21523585;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A21523586-21523618-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A21523586-21523618&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.141825513009 0.152515276313 0.911884561869 21523817 21523849 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;21523816;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A21523586-21523618-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A21523817-21523849&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLLTWQREFSAEQVLLGDL Same 575117 chr6:21523586-21523618- 18713 18713 1119 0 12511 21523586 21523618 Best 19832 19832 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:21523586-21523618&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.515151515152 0.458333333333 3.20723636364 0.9545 -6.55823636364 9.76547272727 0.150157128079 0.965836643836 11575 Best 11575 11575 -3.35727272727 0.6355 -13.7781090909 10.4208363636 0.0439716934239 0.743919851438 20003 Best 20003 20003 0.0 0.0 ENST00000447728.1 NC not annotated potentially spurious 19868 577729 chr7:27185013-27185081+ NoOverlap chr7 27185013 27185081 + 3.95913477825 23 0.876707103075 0.680299981781 3.27883479647 ENST00000006015.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27185012;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27185013-27185081%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27185013-27185081&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.228829576461 0.152206843425 0.691986174528 27224632 27224700 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27224631;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27185013-27185081%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27224632-27224700&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVAVGQIAAGVPFSGGLNGVLSEGHFAHGLDLGQVGGVGVCHWARRRGLGQKRREAGEIWTRDVVSTTWQIHVR Same 578768 chr7:27185013-27185081+ 19598 19598 270 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.594202898551 0.793103448276 -0.672247826087 1.0 -1.3845 0.712252173913 -0.00248224155881 0.385256386193 42758 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -15.4108521739 0.9299 -17.5327869565 2.12193478261 -0.047720258772 0.420692829381 70368 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000520360.5,ENST00000006015.3,ENST00000517402.1 NC,AntiCDS,AntiCDSintron not annotated putative regulatory region 19906 536449 chr2:200764538-200764567+ NoOverlap chr2 200764538 200764567 + 5.63927984238 10 0.810292210269 -3.69811000973 9.33738985211 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;200764537;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A200764538-200764567%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A200764538-200764567&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.054724869137 0.151895251077 1.03951004508 201629261 201629290 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;201629260;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A200764538-200764567%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A201629261-201629290&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISHLFQIREKNMYKTYLQICR Same 537815 chr2:200764538-200764567+ 19277 19277 629 0 266 200764538 200764715 347 347;19906 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:200764538-200764715&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.266666666667 0.0 6.52819 0.8681 -7.14179 13.66998 0.225737043128 1.0378007254 7768 579 579;7768 6.32628 0.4484 -11.4555 17.78178 0.25704639933 0.965172714899 5118 713 713;5118 0.0 0.100905046228 chr2:200650974-200651201+ ENST00000467645.1 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 19913 505800 chr14:105625773-105625820- NoOverlap chr14 105625773 105625820 - 6.42612496018 16 0.441669527733 0.47616243735 5.94996252283 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105625772;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105625773-105625820-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105625773-105625820&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0622437083979 0.151796712071 0.899919268141 106092110 106092157 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106092109;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105625773-105625820-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106092110-106092157&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TYTCNVDHKPSNTKVDKRVGERPAQGGR None NA NA 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.333333333333 8.11780625 0.7525 -0.3607625 8.47856875 0.319287001859 0.936149863709 5213 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 9.53515625 0.4552 -7.207325 16.74248125 0.491581214388 0.97147136703 3564 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.0419969284362 chr16:67661896-67662647+ ENST00000390543.3 NC immunoglobulin segment overlaps an immunoglobulin region 19918 505783 chr14:105600084-105600140- NoOverlap chr14 105600084 105600140 - 4.50547899698 19 0.428486987668 -2.83134749061 7.33682648759 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105600083;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600084-105600140-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105600084-105600140&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0188291236649 0.151694445542 1.02032810482 106066421 106066477 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106066420;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105600084-105600140-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106066421-106066477&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DEFICRAVHEAASPSQTVQRAVSVNPGK None NA NA 0 493 105584148 105601713 727 727;960;1061;1075;1360;1510;1623;2676;3635;4553;4773;10201;11692;13729;19918 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105584148-105601713&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.649122807018 0.670588235294 9.66831052632 0.9083 -14.6179 24.2862105263 0.745079093349 0.965058454364 1896 58 58;100;182;262;563;645;788;967;1151;1635;1844;1870;1896;2274;6232 12.0350210526 0.4193 -18.0998736842 30.1348947368 0.727748927598 1.02930647042 2721 272 272;304;399;525;1125;1998;2118;2203;2322;2721;2752;2787;2891;3396;3969 0.0 0.0304431207741 chr20:45899622-45899685- ENST00000390541.2,ENST00000420153.1 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 19922 539517 chr2:89622313-89622426- NoOverlap chr2 89622313 89622426 - 4.45522107262 38 0.333304421502 1.38199998479 3.07322108784 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89622312;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89622313-89622426-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89622313-89622426&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0687829402812 0.151650927699 0.771227465833 91884578 91884691 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91884577;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89622313-89622426-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91884578-91884691&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NESLNLYSWDFVILDPPKTYTQDGVCLTESGMTQLQSLTVTVPRRKLSKPKLR Different 540872 chr2:89622214-89622426- 9554 9554 10368 0 1126 89622214 89637657 1710 1710;1943;6332;11544;19922;20755;36821;56146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89622214-89637657&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.447368421053 0.0 9.95623421053 0.7318 5.29471052632 4.66152368421 0.642031071431 0.833622715998 2340 23 23;45;328;857;1530;2184;2340;8004 37.8702973684 0.8509 12.1256473684 25.74465 0.990475850786 1.04975339141 1274 334 334;1274;1390;1454;1567;1631;1812;2090 0.989627949568 chr7:152220523-152220735- 0.930044950383 chr7:152220523-152220735- pseudogene lysine (K)-specific methyltransferase 2C (KMT2C) pseudogene (ENSG00000283132) 19942 462837 chr1:1034466-1034504+ NoOverlap chr1 1034466 1034504 + 4.66018453011 13 0.605985057896 -4.86916166085 9.52934619097 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;1034465;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A1034466-1034504%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A1034466-1034504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.034529641384 0.15146409965 1.04965989434 969846 969884 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;969845;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A1034466-1034504%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A969846-969884&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MGRAALKRPKGTP Same 464701 chr1:1034466-1034504+ 19921 19921 21 0 44 1034466 1042172 50 50;19942;30067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:1034466-1042172&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.717948717949 0.4 0.621546153846 0.8714 -5.22869230769 5.85023846154 0.0186203656999 0.747424874077 33141 526 526;33141;60896 -3.25837692308 0.4813 -12.5853153846 9.32693846154 0.0436698130278 0.719617875329 20095 1035 1035;20095;26835 0.0 0.0883864551204 chr17:4499048-4499417+ ENST00000477585.1,ENST00000379370.6 NC,CDSintron coding exon(s) AGRN intronic alternative START 19953 585613 chr8:144050020-144050055+ NoOverlap chr8 144050020 144050055 + 8.58721651882 12 0.498405432212 3.39035010338 5.19686641544 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144050019;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144050020-144050055%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144050020-144050055&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.124382447727 0.151361396623 0.750219991888 145104921 145104956 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145104920;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144050020-144050055%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145104921-145104956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IVGFLHCTHLQALAGEPCGWVLGTGPASP Same 586551 chr8:144050020-144050055+ 21113 21113 -1160 0 591 144049161 144051191 902 902;1476;2944;3502;6411;8419;8554;19953;27554 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144049161-144051191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.36 12.357775 0.9205 6.89934166667 5.45843333333 0.388495229721 0.654924011366 4144 822 822;1234;1275;2096;2721;3466;4144;4232;11683 22.3265333333 0.6612 3.05313333333 19.2734 0.83701993884 0.950439462329 2359 1010 1010;1721;1924;2036;2359;2452;2682;3550;3684 0.0 0.263577733174 chr16:68365017-68365092- ENST00000528912.1 NC pseudogene unitary pseudogene (ENSG00000204791) 19970 589758 chr9:106697944-106698006+ NoOverlap chr9 106697944 106698006 + 5.20751423495 21 0.763569448532 3.6680094174 1.53950481755 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;106697943;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A106697944-106698006%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A106697944-106698006&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.340595031631 0.151173068654 0.434916859897 109460225 109460287 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;109460224;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A106697944-106698006%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A109460225-109460287&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTATTTTTTKHATCALAYTNTPTEPNQADK Same 590705 chr9:106697944-106698006+ 19995 19995 -25 0 12581 106697944 106698006 Best 19970 19970 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:106697944-106698006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.460317460317 0.75 4.79630952381 0.9524 4.34357619048 0.452733333333 0.162934733583 0.351994425433 10728 Best 10728 10728 -6.3010952381 0.4702 -5.68401428571 -0.617080952381 -0.0393997795068 0.361639891086 64776 Best 64776 64776 0.0 0.0 ENST00000411451.2 NC not annotated potentially spurious 19984 525061 chr18:78294316-78294342+ NoOverlap chr18 78294316 78294342 + 9.46563345856 9 0.930800335698 4.01068898042 5.45494447814 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;78294315;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A78294316-78294342%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A78294316-78294342&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.200104043996 0.151029219654 0.711849403285 76054316 76054342 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;76054315;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A78294316-78294342%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A76054316-76054342&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSLGFFSLKLMGRDR Same 526504 chr18:78294316-78294342+ 18603 18603 1381 0 1056 78294316 78294424 1610 1610;19984 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:78294316-78294424&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.482142857143 5.58358888889 0.9442 2.84605555556 2.73753333333 0.0413629009336 0.429386280202 25186 15241 15241;25186 1.75196666667 0.8292 -1.08342222222 2.83538888889 0.011115917302 0.422238146623 30287 15254 15254;30287 0.0 0.0 not annotated putative regulatory region 19990 468356 chr1:199041714-199041770+ NoOverlap chr1 199041714 199041770 + 5.136899934 19 0.953819774889 2.65931570618 2.47758422782 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;199041713;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A199041714-199041770%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A199041714-199041770&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.293538762186 0.150971272739 0.541011129534 199010843 199010899 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;199010842;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A199041714-199041770%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A199010843-199010899&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFVVLMGNSR*GKAASPHRKQK Same 470223 chr1:199041714-199041770+ 20766 20766 -776 9 12591 199041659 199041770 Best 19990 19990;57024 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:199041659-199041770&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.491228070175 0.316666666667 2.3947 0.9581 0.179231578947 2.21546842105 0.0942820264714 0.495192039552 16501 Best 16501 16501;28782 2.11126315789 0.6844 -3.86695789474 5.97822105263 0.16326745685 0.636556450455 7412 Best 7412 7412;32096 0.0 0.0 ENST00000432488.1 NCintron not annotated potentially spurious 20011 485671 chr11:85662411-85662491+ NoOverlap chr11 85662411 85662491 + 4.17393710326 27 0.744368431909 2.25212229899 1.92181480428 ENST00000534224.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;85662410;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85662411-85662491%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A85662411-85662491&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.302592373403 0.150749659918 0.545069606495 85373455 85373535 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;85373454;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85662411-85662491%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A85373455-85373535&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGNVASSWSRLFCPNSCIHFSTKKNKDAKYVYTLSSSDVSQR Same 487630 chr11:85662411-85662491+ 20538 20538 -527 0 640 85662411 85665175 984 984;2049;2813;3027;18118;20011;21291;24329;58708;71875 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:85662411-85665175&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.493827160494 0.2109375 0.193644444444 0.9781 0.458881481481 -0.265237037037 0.00972443333247 0.326281880924 36919 2447 2447;10858;11498;16615;27666;29218;29965;35821;36919;48364 -5.99431851852 0.8806 -1.71307037037 -4.28124814815 -0.0467698230159 0.252662797304 69825 5807 5807;12876;35731;45741;53410;58313;62812;66127;69825;72999 0.0 0.0 ENST00000534224.1,ENST00000527447.1,ENST00000260058.9 AntiCDS,AntiUTR3,AntiNC not annotated putative regulatory region 20012 528220 chr19:37822686-37822721+ NoOverlap chr19 37822686 37822721 + 6.45809163153 12 0.495307850767 -4.20323323955 10.6613248711 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37822685;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37822686-37822721%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37822686-37822721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0218028854974 0.150728298158 1.04629906621 38313326 38313361 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38313325;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37822686-37822721%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38313326-38313361&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DVAIDFSQQEWECLDHVQKTLYWDVMMENCSNLVCFLPQTI Same 529669 chr19:37822686-37822721+ 18590 18590 1422 0 2752 37822686 37830193 3865 3865;20012;66021;67001 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37822686-37830193&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.0 3.343375 0.553 -4.541875 7.88525 0.0387316620934 0.878645114873 25935 16693 16693;25935;53649;54524 7.28650833333 0.2693 -8.010025 15.2965333333 0.16948839385 0.912493911917 7167 7159 7159;7167;27389;47287 0.469063829495 chr19:37709696-37709822- 0.301072053407 chr19:37709696-37709822- ENST00000586819.1 NCintron pseudogene zinc finger protein pseudogene (ENSG00000267640) 20015 475838 chr1:214031493-214031537- NoOverlap chr1 214031493 214031537 - 4.65421310266 15 0.75543348338 -2.13614010662 6.79035320928 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;214031492;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214031493-214031537-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A214031493-214031537&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0467927894126 0.150712354496 0.968161031778 214204836 214204880 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214204835;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214031493-214031537-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214204836-214204880&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QSIKSLECKTMQAAGEGGR Same 477728 chr1:214031493-214031537- 20212 20212 -197 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.577777777778 0.294117647059 6.55979333333 0.9298 -1.58397333333 8.14376666667 0.345525010776 0.915150638516 4743 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -4.94711333333 0.5439 -15.19906 10.2519466667 0.0640717422236 0.765476504648 16140 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000261454.8 AntiCDSintron not annotated potentially spurious 20045 625413 chr12:6672245-6672349+ Extension chr12 6672245 6672349 + 3.75272282703 35 0.883447231032 3.29410002883 0.458622798197 chr12:6672245-6672436+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;6672244;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A6672245-6672349%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A6672245-6672349&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.433417184608 0.150416015699 0.402330569457 6781411 6781515 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;6781410;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A6672245-6672349%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A6781411-6781515&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLLQPGLSPAPRMRVVVCVRGGGGEGMPAGRGQ*PATLPYR Same 626088 chr12:6672245-6672349+ 20224 20224 -179 6 12 6667963 6700148 12 12;12158;18552;20045;33854;38909;39562;56088 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:6667963-6700148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.571428571429 1.7004 0.9712 -0.287794285714 1.98819428571 0.185719002098 0.58313304886 9420 2774 2774;6809;9420;13385;14558;25605;62765;71889 -10.9851285714 0.7475 -9.49481714286 -1.49031142857 -0.0618507816754 0.367576484527 73517 3069 3069;6299;29969;40306;41399;41916;69914;73517 0.0 0.0 ENST00000537383.1,ENST00000319770.7 AntiNC,AntiCDSintron not annotated potentially spurious 20071 582684 chr7:135307168-135307194- NoOverlap chr7 135307168 135307194 - 9.25089979172 9 0.830304417487 2.77226666941 6.47863312231 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;135307167;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A135307168-135307194-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A135307168-135307194&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.178897389541 0.150176367331 0.822365454301 134991920 134991946 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;134991919;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A135307168-135307194-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A134991920-134991946&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VELEATTSHACSSHSLPTALPHSPGGPHGGAIHPGQGPVPAAGPPDTELPHQHHFLCSSICMLLQVFLGVR Same 583646 chr7:135307168-135307194- 18928 18928 1143 0 153 135307168 135310600 183 183;3391;20071 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:135307168-135310600&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.0 11.9224666667 0.9982 0.196155555556 11.7263111111 0.555094772207 0.983046501011 2784 118 118;1627;2784 60.5999555556 0.9995 5.22206666667 55.3778888889 0.980017369807 1.00389067279 1421 597 597;1421;1711 0.0 0.0767665062339 chr5:139381892-139382049- pseudogene solute carrier family 23 (ascorbic acid transporter), member 1 (SLC23A1) pseudogene (ENSG00000276067) 20082 531724 chr19:48485546-48485635- NoOverlap chr19 48485546 48485635 - 5.89540002644 30 0.590557208616 5.64734001358 0.248060012857 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48485545;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48485546-48485635-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48485546-48485635&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.420882654982 0.150099952801 0.339836795792 48988803 48988892 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48988802;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48485546-48485635-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48988803-48988892&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MESSVDDGATATTADAASGEAPEAGPSPSHSPTMCQTGGPGPPPPSPPDGSPDPPDPLGAK Same 533199 chr19:48485546-48485635- 19683 19683 399 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 0.367346938776 12.4097466667 0.8843 12.6919866667 -0.28224 0.525881634104 0.34455603219 2959 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 7.88919 0.4288 9.82078 -1.93159 0.138434612949 0.366786631844 8613 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.0 ENST00000270238.3 UTR3 coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 20124 527011 chr19:6424859-6424885+ NoOverlap chr19 6424859 6424885 + 10.8927554025 9 0.615452302841 6.27623344378 4.61652195868 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;6424858;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6424859-6424885%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A6424859-6424885&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.179174929064 0.149642359441 0.573583868544 6424870 6424896 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;6424869;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6424859-6424885%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A6424870-6424896&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WEDDEGGESRPSRRRRDGRLR Same 528457 chr19:6424859-6424885+ 21040 21040 -916 0 18 6396383 6424885 18 18;152;1552;1681;2470;11355;12316;12885;15770;20124;36825 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:6396383-6424885&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 1.6875 4.79934444444 0.7807 -3.72232222222 8.52166666667 0.0444817565059 0.882959332312 24431 228 228;1347;1830;2200;3049;3131;9882;24431;37923;50538;67562 2.63322222222 0.3526 -7.79304444444 10.4262666667 0.0334796262557 0.729254838507 22727 237 237;2087;2298;2594;2633;2795;14442;22727;50962;60088;60354 0.0 0.0 pseudogene unitary pseudogene ENSG00000214347 20137 483247 chr11:1092397-1092429+ NoOverlap chr11 1092397 1092429 + 6.18407271667 11 0.483984269336 -8.27991840514 14.4639911218 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1092396;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1092397-1092429%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1092397-1092429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00806556973695 0.149512279801 0.970070780715 1090335 1090367 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1090334;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1092397-1092429%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1090335-1090367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVSGVGLVAMCLLCSVCTNSSQVVCRPEEGK Same 485177 chr11:1092397-1092429+ 15013 15013 5124 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575757575758 0.785714285714 8.69041818182 0.7961 -17.8866090909 26.5770272727 0.341102510355 0.98016464231 4816 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 1.48955454545 0.5716 -24.0285545455 25.5181090909 0.373514881081 1.07796907581 4097 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.0799060422692 chr16:721275-721436+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 20193 521950 chr17:47896456-47896524- NoOverlap chr17 47896456 47896524 - 4.60096521222 23 0.851542322224 3.17704338094 1.42392183128 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;47896455;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896456-47896524-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A47896456-47896524&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.352990559016 0.148994840078 0.441767305717 45973822 45973890 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;45973821;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896456-47896524-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A45973822-45973890&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGESNAPFRVPPPGWPAPLLLR Same 523375 chr17:47896456-47896524- 20001 20001 192 0 443 47896176 47896544 633 633;10409;17370;20193;30561;56450;73094;73160 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:47896176-47896544&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.811594202899 0.712258064516 1.04855217391 0.915 1.41828695652 -0.369734782609 0.00325082713351 0.297480846808 39868 6473 6473;12368;17549;37782;39868;58958;68592;73642 -2.27103043478 0.3959 -3.458 1.18696956522 -0.00139739062209 0.456005796729 36070 14976 14976;26600;36070;36380;45476;50232;50264;57233 0.0 0.0 ENST00000376741.4,ENST00000613139.1 AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 20244 595229 chrX:56563828-56563899+ NoOverlap chrX 56563828 56563899 + 4.78222512205 24 0.871130566364 4.5033501486 0.278874973456 ENST00000338222.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;56563827;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A56563828-56563899%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A56563828-56563899&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.421099225875 0.148487932368 0.300367221379 56590261 56590332 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;56590260;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A56563828-56563899%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A56590261-56590332&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CGGASFLPPSLALSLSPARAFPARLRHRGRHG*EWREQRPPAPLPRPCCGPR None NA NA 6 590 56563562 56563899 901 901;12816;20244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:56563562-56563899&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.763888888889 1.06451612903 -4.27475 0.9256 -2.32175 -1.953 -0.0631305775682 0.175660201178 72709 7515 7515;7953;72709 -12.7846875 0.5227 -11.1946791667 -1.59000833333 -0.0483046323131 0.311136543159 70650 5480 5480;31092;70650 0.0 0.16764562212 chr9:83707500-83707679- ENST00000338222.6 CDS under investigation UBQLN2 potential non-ATG start 20291 588194 chr8:144060060-144060086- NoOverlap chr8 144060060 144060086 - 7.86647767491 9 0.753322652018 -1.59759995672 9.46407763163 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144060059;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144060060-144060086-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144060060-144060086&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0705896430043 0.147966379222 1.02469772138 145114963 145114989 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145114962;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144060060-144060086-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145114963-145114989&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LRPVFPGLPAEELLWDSSPTTMGSPEGR Same 589140 chr8:144060060-144060086- 21066 21066 -775 0 441 144060060 144063934 630 630;5684;20291;40487 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144060060-144063934&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.518518518519 0.0 16.5384222222 0.9417 6.84217777778 9.69624444444 0.527467739758 0.844549012046 2948 1144 1144;2250;2948;21092 4.38294444444 0.5254 -12.2371888889 16.6201333333 0.220708282668 0.93235408894 5734 685 685;2819;5734;26413 0.0 0.282687488063 chr15:74132755-74133168+ ENST00000567871.1 UTR5 coding exon(s) OPLAH alternative first exon 20324 479928 chr10:8052002-8052070- NoOverlap chr10 8052002 8052070 - 6.39488704827 23 0.553538932067 5.22425215659 1.17063489168 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8052001;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8052002-8052070-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8052002-8052070&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.294159389685 0.147621352957 0.399173763558 8093965 8094033 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8093964;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8052002-8052070-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8093965-8094033&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EDVALLMARAGQSRRRHTGFDVTGPAPEPGAQGSGEGK Same 481836 chr10:8052002-8052070- 20283 20283 41 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.753623188406 0.940909090909 2.31202608696 0.9386 0.47567826087 1.83634782609 0.10674804693 0.493758145091 15176 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -4.27763913043 0.6164 -3.44382608696 -0.833813043478 -0.0239913848289 0.369060554442 51559 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 ENST00000355358.1,ENST00000418270.1 NCintron,AntiNCintron not annotated putative regulatory region 20331 522307 chr17:50750924-50750956- NoOverlap chr17 50750924 50750956 - 7.22212727368 11 0.908733015668 1.28207269582 5.94005457786 ENST00000393227.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;50750923;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A50750924-50750956-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A50750924-50750956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.173355364443 0.147568859786 0.837838936751 48828285 48828317 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;48828284;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A50750924-50750956-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A48828285-48828317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFNGDYITNVGDNFQR Same 523735 chr17:50750924-50750956- 19348 19348 983 0 11440 50750924 50761416 17729 17729;20331;30313;39578;68410 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:50750924-50761416&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.393939393939 0.785714285714 3.57841818182 0.9857 -0.9407 4.51911818182 0.0851352232257 0.615913267295 17611 2260 2260;17611;40644;48115;53652 -18.3968909091 0.819 -17.0798363636 -1.31705454545 0.00439690452964 0.217724677271 33223 607 607;33223;37013;53407;69870 0.0 0.0 ENST00000393227.6,ENST00000505658.5,ENST00000508482.5,ENST00000503728.1,ENST00000240304.5 AntiCDS,AntiUTR3,AntiNC,AntiCDSintron,AntiUTR3intron protein-coding gene protein-coding gene ENSG00000167117; found after examing lncRNAs for coding potential 20359 514858 chr16:72425869-72425898- NoOverlap chr16 72425869 72425898 - 7.43552007675 10 0.839661249714 0.0923099815845 7.34321009517 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72425868;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425869-72425898-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72425869-72425898&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.125043454227 0.147347590106 0.940349828603 72459768 72459797 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72459767;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425869-72425898-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72459768-72459797&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APYHIPAAAITRNCGVAPEWMAR Same 516508 chr16:72425869-72425898- 19244 19244 1115 0 5346 72425674 72429311 7419 7419;20359;21636;23849;24685;27931;29808;67419;67757;69819;71722 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425674-72429311&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.566666666667 0.857142857143 0.3448 0.9994 0.24835 0.09645 -0.0340343145654 0.24635677193 63064 9185 9185;30001;30975;34321;44342;61179;63064;63782;69032;69981;73105 -2.55686 0.8513 -4.4823 1.92544 -0.0313519679314 0.395515441567 58331 15117 15117;16880;44158;45925;52647;58331;62919;63425;64625;67483;67573 0.0 0.0 ENST00000561611.2,ENST00000624829.3 NC,NCintron not annotated potentially spurious 20390 522787 chr17:64500762-64500791- NoOverlap chr17 64500762 64500791 - 9.08238010406 10 0.96580453193 5.72201004028 3.36037006378 ENST00000225792.9,ENST00000450599.6,ENST00000578804.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;64500761;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64500762-64500791-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A64500762-64500791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.239034043551 0.147089054526 0.485472587047 62496880 62496909 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;62496879;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64500762-64500791-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A62496880-62496909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPYIAILPHCNTLQMWKM Same 524221 chr17:64500762-64500791- 20636 20636 -246 0 785 64497052 64506947 1219 1219;1314;11116;12743;15272;20390;22680;57720;59551 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:64497052-64506947&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.0 1.42324 0.9301 1.56081 -0.13757 -0.0345423726287 0.224316247566 63372 3317 3317;9751;12985;29872;53023;54218;61045;63372;66796 -8.09154 0.9084 -7.78615 -0.30539 -0.0485575743361 0.301095815474 70752 5759 5759;11482;17125;20897;41797;70711;70752;72223;73201 0.0 0.0595078934984 chr22:38487879-38488115- ENST00000225792.9,ENST00000581230.5 CDS,NC coding exon(s) DDX5 alternative first exon 20397 577684 chr7:27152388-27152447+ NoOverlap chr7 27152388 27152447 + 4.74761993326 20 0.678711375601 0.860749894381 3.88687003888 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27152387;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27152388-27152447%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27152388-27152447&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.173935952248 0.147048337775 0.735006446176 27192007 27192066 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27192006;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27152388-27152447%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27192007-27192066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQEISQVASCKAAAAAPGTERAQSPAGAARPGLAGASLR Same 578723 chr7:27152388-27152447+ 21003 21003 -606 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.22762148338 1.788495 0.9447 -1.498765 3.28726 0.101026532329 0.599904486954 15731 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -6.650025 0.7542 -8.313155 1.66313 -0.0266512544065 0.445837503183 54061 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NC,AntiNC not annotated putative regulatory region 20464 573880 chr6:15245294-15245326- NoOverlap chr6 15245294 15245326 - 8.71747281335 11 0.558209700576 2.92343615402 5.79403665933 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;15245293;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245294-15245326-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A15245294-15245326&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.13690808143 0.146462505449 0.796683434346 15245525 15245557 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;15245524;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245294-15245326-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A15245525-15245557&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LARDWPAERVVRER Same 574909 chr6:15245294-15245326- 21601 21601 -1137 0 1766 15244943 15246114 2604 2604;15135;20464;24558;26329;27078;34912;61691;69748 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:15244943-15246114&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.757575757576 1.375 2.46396363636 0.7168 -0.121881818182 2.58584545455 -0.00710335652512 0.451466701045 45352 9551 9551;16260;24695;37413;40709;45352;56150;59595;63982 -0.543863636364 0.3697 0.370663636364 -0.914527272727 -0.0272253960462 0.293953477178 54557 10022 10022;12289;27835;30484;54557;56016;61735;63783;63901 0.0 0.0 not annotated putative regulatory region 20538 558837 chr4:41745734-41745796+ NoOverlap chr4 41745734 41745796 + 4.96313809355 21 0.564636853444 1.0008094623 3.96232863125 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41745733;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41745734-41745796%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41745734-41745796&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.129628433323 0.145651300501 0.751858724589 41747751 41747813 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41747750;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41745734-41745796%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41747751-41747813&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMAAATTIALGLPARPLARPGPGSPAVAAAAAAAGFQIR Same 559820 chr4:41745734-41745796+ 21235 21235 -697 0 2000 41745545 41752242 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.873015873016 1.19736842105 2.4383952381 0.6038 0.629976190476 1.80841904762 0.000839675043435 0.475327458563 41091 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 -0.335295238095 0.4484 -2.47607619048 2.14078095238 0.0360781799609 0.486626140368 22009 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0655336134039 chr8:144528761-144528916- ENST00000226382.3 AntiUTR3 not annotated putative regulatory region 20553 490043 chr11:126101394-126101435- NoOverlap chr11 126101394 126101435 - 6.37212850366 14 0.776286390042 2.21992852858 4.15219997508 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;126101393;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A126101394-126101435-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A126101394-126101435&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.222656917341 0.145467688203 0.688145693064 125971289 125971330 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125971288;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A126101394-126101435-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125971289-125971330&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQWGMQVGSAANAVCRAR Same 492037 chr11:126101394-126101435- 20019 20019 534 0 12857 126101394 126101435 Best 20553 20553 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:126101394-126101435&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.547619047619 0.823529411765 8.62578571429 0.9661 -0.0335714285714 8.65935714286 0.468137461554 0.925757967301 3361 Best 3361 3361 7.79001428571 0.5365 -2.06602142857 9.85603571429 0.29363770687 0.742732209238 4699 Best 4699 4699 0.0 0.0 ENST00000567082.1 NC not annotated putative regulatory region 20568 525008 chr18:76931069-76931110+ NoOverlap chr18 76931069 76931110 + 6.71595715944 14 0.512772891258 0.451014373984 6.26494278546 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;76931068;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A76931069-76931110%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A76931069-76931110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0838394787413 0.145309161978 0.905434894062 74643025 74643066 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;74643024;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A76931069-76931110%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A74643025-74643066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YHNINFHLGQELIQHNSNGNSELLINGSIR Same 526451 chr18:76931069-76931110+ 21254 21254 -686 0 514 76931069 76931224 769 769;20568 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:76931069-76931224&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.285714285714 0.0 5.6448 0.6744 -3.70944285714 9.35424285714 0.19036124484 0.969050727935 9211 939 939;9211 17.4579142857 0.6418 -2.85282142857 20.3107357143 0.796885641231 1.00217493848 2488 689 689;2488 0.0 0.0 ENST00000253159.12,ENST00000543926.6 CDSintron,NCintron coding exon(s) ZNF236 cassette exon 20574 560432 chr4:157360983-157361015+ NoOverlap chr4 157360983 157361015 + 6.76146358793 11 0.935774776837 0.101036537777 6.66042705016 ENST00000264426.13 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;157360982;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157360983-157361015%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A157360983-157361015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.123197478337 0.145277326308 0.908306651433 158282135 158282167 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;158282134;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157360983-157361015%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A158282135-158282167&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ICSPCLTSMFYRFKKCG Same 561416 chr4:157360983-157361015+ 20216 20216 358 0 430 157360983 157365960 611 611;15695;15785;16090;17171;20574;21787;68912;71132 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:157360983-157365960&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 1.1 0.384572727273 1.0 -1.16150909091 1.54608181818 -0.0236370542035 0.368900033384 56585 3893 3893;6182;6226;10710;11582;13344;21003;56071;56585 -1.15576363636 0.9556 -6.64026363636 5.4845 0.0138969278731 0.550063780259 29180 3522 3522;3805;7560;13336;15714;28221;29180;32592;39824 0.0 0.0418391341474 chr11:105965947-105966061+ ENST00000264426.13,ENST00000503980.1,ENST00000296526.11,ENST00000471736.5 CDS,NC,CDSintron,NCintron coding exon(s) GRIA2 alternative final exon 20584 543105 chr20:31722928-31722960+ NoOverlap chr20 31722928 31722960 + 4.98392731493 11 0.933982535356 -3.53554549813 8.51947281306 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;31722927;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A31722928-31722960%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A31722928-31722960&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0999992107026 0.145189698712 1.02585298989 30310731 30310763 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;30310730;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A31722928-31722960%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A30310731-30310763&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLLPPGSPAPSLLHAPWLSASYWEPGVLSR Same 544494 chr20:31722928-31722960+ 21170 21170 -586 0 1635 31722888 31724001 2432 2432;20584;65424 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:31722888-31724001&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 0.55 -2.45873636364 0.9938 -3.92521818182 1.46648181818 -0.0463486675348 0.370874797236 69771 15736 15736;50767;69771 -8.4013 0.4541 -11.6673727273 3.26607272727 -0.0344256808052 0.440919083209 60988 28732 28732;59986;60988 0.0 0.0 ENST00000629058.1,ENST00000422920.1,ENST00000420488.5 NC,AntiUTR5,AntiUTR5intron not annotated putative regulatory region 20617 536870 chr2:219279398-219279448+ NoOverlap chr2 219279398 219279448 + 6.07033531806 17 0.813629896912 4.89215891151 1.17817640655 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;219279397;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219279398-219279448%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A219279398-219279448&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.345397469425 0.144813905322 0.340980287685 220144120 220144170 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;220144119;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219279398-219279448%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A220144120-220144170&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MPARTAGPGASYAAAASRAAGAR Same 538238 chr2:219279398-219279448+ 20326 20326 291 0 220 219269630 219279492 274 274;812;10599;20617;42437;70571 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:219269630-219279492&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.803921568627 1.09285714286 5.85163529412 0.7954 4.26628823529 1.58534705882 0.0996721108236 0.413377416867 15870 408 408;491;1561;1860;15870;51627 4.18318235294 0.3805 1.64292352941 2.54025882353 0.0638244584341 0.474487821128 16190 1012 1012;1034;1527;1616;16190;55697 0.0 0.0 ENST00000336576.9,ENST00000477917.5 UTR5,NC pseudo-exon TUBA4B pseudo-exon 20633 591987 chr9:61108221-61108253- NoOverlap chr9 61108221 61108253 - 10.0179999091 11 0.549492637522 7.37902730161 2.63897260753 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61108220;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61108221-61108253-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61108221-61108253&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.197588105719 0.144612656164 0.39386480111 43849850 43849818 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;43849849;-31;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61108221-61108253-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A43849850-43849818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSCKPHTSLSFLSASLCHFILISCLYVSAYLQSCK Different 592938 chr9:61108221-61108325- 2242 2242 18391 0 412 61096906 61113907 579 579;1316;6725;6965;20633;21300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61096906-61113907&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.636363636364 0.6 7.71925454545 0.457 5.21182727273 2.50742727273 0.00910515400888 0.420983327204 37173 3401 3401;4265;9880;14496;15960;37173 36.1160272727 0.8056 15.2068 20.9092272727 1.01067198206 0.906202446878 935 634 634;935;978;1145;1930;2566 0.942505731047 chr9:41964538-41964644- 0.817782430919 chr9:41964538-41964644- redundant PhyloCSF signals are accounted for elsewhere on the list 20670 475575 chr1:205448289-205448330- NoOverlap chr1 205448289 205448330 - 4.97279291494 14 0.662401770047 -2.69291438375 7.66570729869 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;205448288;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205448289-205448330-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A205448289-205448330&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0209319133129 0.144314865631 1.00844305381 205417417 205417458 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;205417416;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205448289-205448330-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A205417417-205417458&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AMGYSEGRAPSPAQLHLPWDQVR Same 477461 chr1:205448289-205448330- 21701 21701 -1031 0 426 205429956 205457273 602 602;5870;20670;25343;28258;42315;54500 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:205429956-205457273&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.430769230769 -0.882078571429 0.9228 -8.83228571429 7.95020714286 0.0465221221971 0.895855737514 23930 1075 1075;10557;16883;23930;42062;54053;60191 -3.54012142857 0.6502 -15.6311785714 12.0910571429 0.108423451335 0.830013590301 10748 283 283;9691;10748;23486;28634;42041;49407 0.0 0.0 ENST00000362189.2,ENST00000367154.5,ENST00000625854.1 NC,UTR5intron,NCintron under investigation; now made coding Finds a 33aa single exon CDS within a 5' exon of LEMD1 in GENCODE [chr1:205441026-205440925], although this exon is part of lncRNA BLACAT1 in RefSeq. Transcriptomics data make it clear that the locus should indeed be considered an independent gene from LEMD1, with an indication of potential brain / neuronal specificity (e.g. SRR486241). The CDS was initially considered hard to appraise because of its small size, although the reading frame is conserved across vertebrates with only 3mer indels in the genomic alignments. Following the analytical work presented here, it was decided to convert this gene (i.e. BLACAT1) to protein-coding, and ENSG00000281406 appeared in GENCODEv31. 20711 577664 chr7:27143479-27143568+ NoOverlap chr7 27143479 27143568 + 3.74097989599 30 0.863661656621 2.4065498809 1.33443001509 ENST00000222726.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27143478;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143479-27143568%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27143479-27143568&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.346309693274 0.143936916589 0.489209559941 27183098 27183187 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27183097;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143479-27143568%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27183098-27183187&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AADAEIHAIVAVAVPAGVHARRVPELLAHGTMISIIMQLVVRAIWIATAK Same 578703 chr7:27143479-27143568+ 20672 20672 39 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.544444444444 0.9 0.465866666667 1.0 -0.17689 0.642756666667 0.0642648922881 0.423498683935 20542 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -10.23085 0.9343 -11.80054 1.56969 -0.0342890104044 0.474817826331 60878 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222726.3,ENST00000467897.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 20741 508729 chr15:45198579-45198653- NoOverlap chr15 45198579 45198653 - 3.71864002228 25 0.855315785458 0.801363945007 2.91727607727 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;45198578;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45198579-45198653-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A45198579-45198653&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.229750109956 0.143596115182 0.663765509745 45490777 45490851 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;45490776;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45198579-45198653-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A45490777-45490851&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLVLCVVAAATSVRIRVTALWEQWHGKGLGIFFPFFVTFYINR Same 510453 chr15:45198579-45198653- 20466 20466 275 0 1111 45198578 45201222 1685 1685;3658;6770;7314;14365;15805;20741;57385 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:45198578-45201222&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.613333333333 1.00961538462 -1.295092 0.958 -1.20314 -0.091952 -0.0388718043554 0.324899007115 65917 5595 5595;8787;14727;17218;22093;24393;42532;65917 -3.857196 0.4183 -3.27698 -0.580216 -0.026512390668 0.390423697862 53935 8460 8460;15084;16682;28123;29490;30928;42026;53935 0.0 0.0 ENST00000568314.1,ENST00000290894.12,ENST00000561278.1,ENST00000560034.1 NC,CDSintron,UTR5intron,AntiNCintron not annotated 3 tRNAs 20755 539521 chr2:89631587-89631700- NoOverlap chr2 89631587 89631700 - 3.51157627765 38 0.400230893094 0.0595947856966 3.45198149195 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89631586;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89631587-89631700-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89631587-89631700&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0456691313428 0.143492874047 0.816173461739 91893838 91893951 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91893837;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89631587-89631700-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91893838-91893951&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQDICVVCGSFGQGAEGRLLACSQCGQCYHPYCVSIKVNILK Same 540876 chr2:89631587-89631700- 20958 20958 -203 0 1126 89622214 89637657 1710 1710;1943;6332;11544;19922;20755;36821;56146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89622214-89637657&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.429824561404 0.0 13.3850631579 0.7647 3.76834210526 9.61672105263 0.9868121424 1.04688416225 857 23 23;45;328;857;1530;2184;2340;8004 42.3889894737 0.922 11.2992131579 31.0897763158 0.965088410147 1.03557353424 1631 334 334;1274;1390;1454;1567;1631;1812;2090 0.915916651532 chr7:152229923-152230027- 0.785824996203 chr7:152229923-152230027- pseudogene lysine (K)-specific methyltransferase 2C (KMT2C) pseudogene (ENSG00000283132) 20890 544146 chr20:58852721-58852780+ NoOverlap chr20 58852721 58852780 + 5.13901510686 20 0.705725185016 2.45890998542 2.68010512143 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;58852720;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58852721-58852780%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A58852721-58852780&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.248728575645 0.142266409308 0.578136355682 57427776 57427835 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;57427775;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58852721-58852780%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A57427776-57427835&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPNQSGRGVEGAKTSLRGLRSPAPLPK Same 545537 chr20:58852721-58852780+ 21125 21125 -235 0 305 58839591 58856213 410 410;1778;7945;12986;19091;20890;24880;65020;71495 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:58839591-58856213&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.5625 3.357735 0.9905 -4.889905 8.24764 0.379943366843 0.967027909233 4263 115 115;1018;3966;4263;7912;16426;32661;49033;70767 2.364895 0.3619 -6.157295 8.52219 0.167499028098 0.748139594404 7236 366 366;3178;7236;8695;17364;24762;29540;46544;65521 0.0 0.0 ENST00000371100.8,ENST00000313949.11,ENST00000462499.5 UTR5,UTR3intron,NCintron coding exon(s) GNAS cassette exon 20942 470921 chr1:26360081-26360113- NoOverlap chr1 26360081 26360113 - 8.78140024705 11 0.656701138184 4.7660727826 4.01532746445 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;26360080;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26360081-26360113-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A26360081-26360113&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.197404031416 0.141792458573 0.591113199252 26686572 26686604 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;26686571;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26360081-26360113-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A26686572-26686604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGGISPQMQRMRVAPAVRCSDGR Same 472797 chr1:26360081-26360113- 21493 21493 -551 0 1345 26354279 26360113 2019 2019;2765;11776;20942 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:26354279-26360113&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.757575757576 0.857142857143 -6.86300909091 0.9554 -13.1987181818 6.33570909091 -0.0211552883659 0.745053630767 54936 1489 1489;2433;6796;54936 -12.0670909091 0.3835 -15.5713 3.50420909091 -0.0149768125135 0.427303005126 44290 3180 3180;5046;25356;44290 0.0 0.0715038089821 chr14:21522008-21522244- coding exon(s) CRYBG2 3 alternative first coding exons 20968 567848 chr5:77946424-77946450- NoOverlap chr5 77946424 77946450 - 7.72995548778 9 0.90061629494 -0.214755389425 7.94471087721 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;77946423;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77946424-77946450-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A77946424-77946450&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0890358939782 0.14152987845 0.964728643997 77242248 77242274 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;77242247;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77946424-77946450-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A77242248-77242274&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TDCKRGPCTTEGK Same 568852 chr5:77946424-77946450- 19367 19367 1601 0 10817 77946424 77958262 16522 16522;20968;49271 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:77946424-77958262&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.592592592593 0.45 5.62173333333 0.9944 -6.74742222222 12.3691555556 0.276837780503 1.02203511371 6158 5139 5139;6158;12726 -10.5270333333 0.8557 -24.0931333333 13.5661 -0.0413580866396 0.789616940975 66232 5598 5598;11296;66232 0.0 0.0 ENST00000523413.2 NC not annotated potentially spurious 21020 546238 chr21:8211002-8211430+ NoOverlap chr21 8211002 8211430 + 1.83514264497 143 0.562981399466 1.2241699285 0.610972716467 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8211001;429;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8211002-8211430%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8211002-8211430&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.329516254627 0.141046516045 0.596123581885 110449 110877 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;110448;429;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8211002-8211430%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A110449-110877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFLDSVGGGAWPFLVGGAICLVNSDNERDSGMLTSYATPERSASPNFLEGQVAFSHPRLSNNRSVMPLDVRGCTRATLTGSACAYPTPAGAGNPLNPIRDGDRGLQLFPMNEEFPVSAGHKLALIKSLPFVHTARRYYRLDGLVRPSDRPRRGRPTALAER*EDGR Same 547652 chr21:8211002-8211430+ 5503 5503 15517 4 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.599067599068 1.03924418605 -1.90985454545 0.2692 -2.54049090909 0.630636363636 -0.00494769414328 0.599852628676 44122 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -3.43812587413 0.1916 -3.67501118881 0.236885314685 -0.00595222955833 0.540760268657 38547 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1,ENST00000631211.1 NCintron,AntiNC not annotated SSU-rRNA_Hsa repeat sequence 21077 591983 chr9:61072984-61073097- NoOverlap chr9 61072984 61073097 - 2.36311584868 38 0.408601269711 -2.29130791206 4.65442376074 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61072983;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61072984-61073097-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61072984-61073097&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00695073537178 0.140488392017 0.939095592961 43885077 43884964 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;43885076;-112;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61072984-61073097-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A43885077-43884964&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSDTIVLSQKEHLPVTQIVMTDAGQPHSEADYTLGPLLCRGDSK Same 592934 chr9:61072984-61073097- 20456 20456 621 0 51 61063756 61073097 57 57;497;1416;2274;21077 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61063756-61073097&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.535087719298 0.496732026144 2.97257631579 0.4318 -3.06704473684 6.03962105263 0.155526174491 0.94191605096 11180 1534 1534;1928;3000;3904;11180 33.6914526316 0.8142 7.31055263158 26.3809 1.00337645795 1.04850192555 1059 Best 1059 1059;1309;1336;1510;1854 0.95608819706 chr9:39109160-39109287- 0.864322843737 chr9:39109160-39109287- pseudogene contactin associated protein-like 3B (CNTNAP3B) unprocessed pseudogene (ENSG00000283541) 21079 512312 chr16:72787623-72787727+ NoOverlap chr16 72787623 72787727 + 2.72271713827 35 0.623464887901 -0.805302876873 3.52802001515 ENST00000268489.9,ENST00000397992.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72787622;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72787623-72787727%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72787623-72787727&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0443555248422 0.140465274207 0.809395595755 72821522 72821626 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72821521;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72787623-72787727%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72821522-72821626&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DCSVFVQGRLEMLTQSFLPTERALARQAVVRAAAAAAAATAAAAATATAAAAGGDVK Same 513956 chr16:72787623-72787727+ 23040 23040 -1961 0 1044 72786749 72802320 1595 1595;21079;37333;39725;51719;54149;65275;67341;70055 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72786749-72802320&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.742857142857 1.153054221 -0.898357142857 0.9013 -4.39648857143 3.49813142857 0.0652676307914 0.697495042717 20402 2453 2453;8633;10458;20402;20517;20622;22628;49851;70811 -12.6251 0.8475 -25.2373257143 12.6122257143 0.106570941026 0.899094536257 10906 1956 1956;9416;10906;18989;19008;25678;39101;45598;59430 0.0 0.0 ENST00000563328.4,ENST00000268489.9,ENST00000584072.1 NC,AntiCDS,AntiNC not annotated putative regulatory region 21082 559056 chr4:56410528-56410578+ NoOverlap chr4 56410528 56410578 + 3.14144709356 17 0.840351137022 -4.11320590272 7.25465299627 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;56410527;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56410528-56410578%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A56410528-56410578&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.12590785741 0.140434484456 1.01020850729 57276694 57276744 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;57276693;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A56410528-56410578%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A57276694-57276744&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETKPWLEIVNHFQVTFNMESGAGKHWTEEEVKALLSVWAEK Same 560041 chr4:56410528-56410578+ 21027 21027 55 0 775 56410528 56419951 1197 1197;2551;4102;21082 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:56410528-56419951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.509803921569 0.0 -1.19575882353 0.9848 -10.8621647059 9.66640588235 0.152877481664 1.00136047054 11374 1822 1822;5450;9723;11374 20.9763058824 0.9116 -5.65435882353 26.6306647059 0.902336177824 1.05510096804 2092 651 651;699;700;2092 0.0 0.0 ENST00000264220.6,ENST00000507724.1 AntiCDSintron,AntiNCintron pseudogene Transcribed unprocessed pseudogene. Myb/SANT-like DNA-binding domain containing (ENSG00000283156) 21198 494103 chr12:3298233-3298262- NoOverlap chr12 3298233 3298262 - 7.89044998884 10 0.631006332494 -1.1650200367 9.05547002554 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3298232;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3298233-3298262-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3298233-3298262&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0821156479114 0.139282667612 1.01871730959 3407399 3407428 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3407398;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3298233-3298262-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3407399-3407428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QPQGVLISLCSFALSTCRMGLICCLHR Same 496098 chr12:3298233-3298262- 23005 23005 -1807 0 531 3298233 3307795 799 799;1890;3339;6900;15956;21198;23499 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3298233-3307795&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.566666666667 0.416666666667 4.86679 0.9352 -6.47271 11.3395 0.189043544022 1.00834050184 9275 197 197;419;1376;1520;1852;2555;9275 1.90174 0.4452 -11.06758 12.96932 0.106733115482 0.832265570955 10886 223 223;711;903;924;1207;1939;10886 0.868087036069 chr12:30991856-30991915+ 0.779279424211 chr12:30991856-30991915+ ENST00000505276.2 NC pseudogene tetraspanin 11 (TSPAN11) pseudogene (ENSG00000250770); single locus on multiple rows 21219 564625 chr5:81851895-81851960+ NoOverlap chr5 81851895 81851960 + 4.59859096225 22 0.741167453893 2.10458647257 2.49400448968 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;81851894;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A81851895-81851960%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A81851895-81851960&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.256273053376 0.139071936718 0.57657687594 81147714 81147779 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;81147713;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A81851895-81851960%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A81147714-81147779&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LESSPLGALCLQLPPLTRAQIQRRW*EP*LDYSNSPAR Same 565613 chr5:81851895-81851960+ 21480 21480 -261 12 10939 81851608 81852135 16747 16747;21219;69158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:81851608-81852135&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.651515151515 1.14782608696 -0.170227272727 0.8823 -2.10700454545 1.93677727273 0.000899849966519 0.488990967034 41058 14281 14281;41058;41828 -6.6441 0.5932 -9.52840454545 2.88430454545 -0.01193883458 0.508084947487 42118 9556 9556;42118;64012 0.0 0.0 ENST00000512859.1 NC not annotated potentially spurious 21291 485680 chr11:85664258-85664293+ NoOverlap chr11 85664258 85664293 + 6.49542508523 12 0.824177920195 0.536475022634 5.95895006259 ENST00000527447.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;85664257;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85664258-85664293%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A85664258-85664293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.151917792956 0.138484165815 0.860822694781 85375302 85375337 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;85375301;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85664258-85664293%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A85375302-85375337&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPGTLCRRLVVVVTAAATAASSWGLSPPLFGAATVTAAAAASDTV Same 487639 chr11:85664258-85664293+ 20363 20363 928 0 640 85662411 85665175 984 984;2049;2813;3027;18118;20011;21291;24329;58708;71875 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:85662411-85665175&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.694444444444 1.2 -0.230658333333 0.7839 1.54146666667 -1.772125 -0.0118669728096 0.134001140219 48364 2447 2447;10858;11498;16615;27666;29218;29965;35821;36919;48364 0.670691666667 0.5841 4.28616666667 -3.615475 -0.0313358156955 0.204514294159 58313 5807 5807;12876;35731;45741;53410;58313;62812;66127;69825;72999 0.0 0.189485095087 chr7:72941837-72943522+ ENST00000527447.1,ENST00000260058.9,ENST00000534224.1,ENST00000531515.5 AntiCDS,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 21300 591984 chr9:61096906-61096959- NoOverlap chr9 61096906 61096959 - 4.70538339019 18 0.376033162941 -3.77258887225 8.47797226244 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;61096905;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61096906-61096959-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A61096906-61096959&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00562349561862 0.138442142085 1.04933084095 43861136 43861083 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;43861135;-52;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A61096906-61096959-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A43861136-43861083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAVSFAYAAGAGQLRAAVNLAER Same 592935 chr9:61096906-61096959- 19343 19343 1957 0 412 61096906 61113907 579 579;1316;6725;6965;20633;21300 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:61096906-61113907&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 1.27058823529 7.33035 0.3574 -0.895172222222 8.22552222222 0.113999422741 0.942308247735 14496 3401 3401;4265;9880;14496;15960;37173 15.6213944444 0.5332 -3.32813333333 18.9495277778 0.774484530577 1.00517827867 2566 634 634;935;978;1145;1930;2566 1.03763099188 chr9:41953183-41953383- 1.07510062604 chr9:41953183-41953383- redundant PhyloCSF signals are accounted for elsewhere on the list 21323 679673 chr2:131370351-131370419- Extension chr2 131370351 131370419 - 2.28637389061 23 0.316616743128 -8.54894784028 10.8353217309 chr2:131370351-131370440- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131370350;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131370351-131370419-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131370351-131370419&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0312588108031 0.138178531856 1.02110393831 132127924 132127992 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;132127923;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131370351-131370419-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A132127924-132127992&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TISQTQITASVTITTQKGLIKSYFLFFCSILFDFTLK Same 680260 chr2:131370351-131370419- 16381 16381 4942 0 643 131370351 131386316 988 988;1634;5892;16115;21323;24702;26053;30266;32713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131370351-131386316&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.31884057971 0.0 5.57667826087 0.6387 -25.3512608696 30.9279391304 0.531785621329 1.14971885979 2922 1235 1235;1643;1841;2007;2369;2922;4039;4272;46168 19.2575347826 0.864 -50.3138913043 69.571426087 0.591488586556 1.16379057147 3194 939 939;1359;1734;1945;2052;2301;2444;3194;23136 0.987344454344 chrM:12337-14148+ 1.03392347533 chrM:12337-14148+ pseudogene extension mitochondrial pseudogene region extended (e.g. ENSG00000284003) 21487 496188 chr12:70447636-70447662- NoOverlap chr12 70447636 70447662 - 10.6650777393 9 0.562927358579 -9.09727768103 19.7623554203 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70447635;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70447636-70447662-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70447636-70447662&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.147120169919 0.136547753243 0.965037571754 70841416 70841442 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70841415;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70447636-70447662-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70841416-70841442&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAQVQPFILEIPFSLWGQDALEQWGLNLSVLPPFW Same 498188 chr12:70447636-70447662- 17181 17181 4306 0 155 70445357 70448659 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.0 0.264477777778 0.1637 -4.4806 4.74507777778 0.0228839030398 0.618920060075 31433 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 12.0583666667 0.2064 -12.7805222222 24.8388888889 0.151914464811 1.04872212332 7929 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 21525 479594 chr10:129844645-129844689+ NoOverlap chr10 129844645 129844689 + 6.28069342176 15 0.966981511152 3.84199330012 2.43870012164 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129844644;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129844645-129844689%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129844645-129844689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.27517274683 0.136255171451 0.480336674664 131642909 131642953 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131642908;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129844645-129844689%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131642909-131642953&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LITTGITFCACHTFPGTALNPESSRMGGSDNGHLPLK Same 481499 chr10:129844645-129844689+ 22696 22696 -1171 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488888888889 0.769230769231 6.0792 0.9851 4.08509333333 1.99410666667 0.204896706976 0.428694955994 8576 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -0.733586666667 0.9214 0.967793333333 -1.70138 -0.0146969556696 0.292416639594 44090 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 21550 579670 chr7:142400262-142400291+ NoOverlap chr7 142400262 142400291 + 8.75383000374 10 0.716340886549 3.26604005694 5.48778994679 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142400261;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142400262-142400291%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142400262-142400291&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.172416398126 0.135960724368 0.749039418904 142231688 142231659 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142231687;-28;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142400262-142400291%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142231688-142231659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEVSDGYSVSR None NA NA 0 362 142381077 142408131 503 503;2671;2771;4607;6492;14294;16204;21550;22314 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142381077-142408131&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 20.88501 0.8853 3.78705 17.09796 0.574715125238 0.984413320581 2682 2259 2259;2284;2682;2903;3300;3654;22326;44473;52081 16.77379 0.4774 -13.2578 30.03159 0.57144027304 1.04981818982 3257 2619 2619;2643;2937;3046;3257;3635;4345;4428;8592 0.0 0.0 ENST00000390364.3 NC immunoglobulin segment overlaps an immunoglobulin region 21586 577709 chr7:27169442-27169546+ NoOverlap chr7 27169442 27169546 + 2.06994565896 35 0.862234574764 -2.02573716811 4.09568282706 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27169441;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27169442-27169546%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27169442-27169546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0149648065268 0.135671188495 0.871727786451 27209061 27209165 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27209060;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27169442-27169546%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27209061-27209165&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVMPRPARPPRAEVPGDDFN*SNEGSVVLSRERWIPTTGNYLNHRPVLVLPAK Same 578748 chr7:27169442-27169546+ 21313 21313 273 15 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.552380952381 0.878136200717 -1.34128 0.9883 -3.20398857143 1.86270857143 0.0261448626317 0.542543071838 30183 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -7.14804857143 0.6569 -7.65262857143 0.50458 -0.0223253037363 0.466239030913 50076 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000519935.1,ENST00000519694.1,ENST00000489695.1,ENST00000470747.4,ENST00000465941.1 NC,NCintron,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 21636 514865 chr16:72427437-72427466- NoOverlap chr16 72427437 72427466 - 6.85875003934 10 0.910016021973 -0.619719839096 7.47846987844 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72427436;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427437-72427466-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72427437-72427466&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0761290475954 0.135121970269 0.956757197256 72461336 72461365 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72461335;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427437-72427466-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72461336-72461365&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAINIPIESLYFFVSPFCFQRLPLAQRPVPTEHLSGSTATQTT Same 516515 chr16:72427437-72427466- 20562 20562 1074 0 5346 72425674 72429311 7419 7419;20359;21636;23849;24685;27931;29808;67419;67757;69819;71722 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425674-72429311&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.7 0.576923076923 -3.68285 0.9981 -11.58032 7.89747 -0.0310444496176 0.850064458502 61179 9185 9185;30001;30975;34321;44342;61179;63064;63782;69032;69981;73105 -7.4177 0.7023 -16.63535 9.21765 -0.0251469098093 0.670981273626 52647 15117 15117;16880;44158;45925;52647;58331;62919;63425;64625;67483;67573 0.0 0.0 ENST00000561611.2,ENST00000564508.2 NC,AntiNC not annotated potentially spurious 21659 548080 chr22:21469127-21469186+ NoOverlap chr22 21469127 21469186 + 5.10666499287 20 0.46259250782 0.248214989528 4.85845000334 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;21469126;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21469127-21469186%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A21469127-21469186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0603492327247 0.134976686646 0.841630468542 21823416 21823475 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21823415;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A21469127-21469186%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21823416-21823475&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLSPHSHPLQEVQVKVMEAAEELDAWQSGR Same 549500 chr22:21469127-21469186+ 22034 22034 -375 0 857 21467445 21469818 1328 1328;2227;3023;6657;7795;18550;21659 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:21467445-21469818&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.4 7.025815 0.8 -0.697495 7.72331 0.386021841484 0.931885682891 4183 1035 1035;1287;1331;1719;1904;4183;5351 2.81402 0.5058 -7.136605 9.950625 0.270855403184 0.803255755292 4935 2446 2446;2467;2733;2842;3549;4935;9390 0.522121025176 chr22:18529792-18529856+ 0.694394552568 chr22:18529792-18529856+ ENST00000413877.5,ENST00000425458.5 NC,NCintron protein-coding gene protein coding gene ENSG00000206140 21712 493926 chr12:132119122-132119163+ NoOverlap chr12 132119122 132119163 + 7.02433567388 14 0.345971073254 -2.4041927542 9.42852842808 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132119121;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132119122-132119163%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132119122-132119163&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0134678888893 0.134659418101 1.04727551192 132603667 132603708 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132603666;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132119122-132119163%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132603667-132603708&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LALHLPTQEQAAPQAR Same 495917 chr12:132119122-132119163+ 20983 20983 729 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.714285714286 0.222222222222 9.9258 0.5292 -4.33304285714 14.2588428571 0.290358993051 1.04270877326 5846 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 17.6568285714 0.4868 -14.5704071429 32.2272357143 0.722899327844 1.02872596613 2736 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.943536461236 chr12:131982093-131982478+ 0.925930074448 chr12:131982093-131982478+ ENST00000475841.2,ENST00000332441.7 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 21750 498458 chr13:63746939-63746998+ NoOverlap chr13 63746939 63746998 + 4.97599999756 20 0.322339971008 -2.54069489539 7.51669489294 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;63746938;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A63746939-63746998%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A63746939-63746998&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00183545912317 0.134325054825 1.03007284806 64321072 64321131 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;64321071;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A63746939-63746998%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A64321072-64321131&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NPSQFSPLDNMCCNYYGNSCGYGSSYGCGYGSGYGYGYGSSYGCGYGTGYSCGYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGYSCGYGSGSGCGYGTGFGCGYGCGYGTGYGCGCGSGSGYCGYRPFCFR Same 500474 chr13:63746939-63746998+ 20874 20874 876 0 13409 63746801 63746998 Best 21750 21750;26620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:63746801-63746998&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.55 0.0 3.57555 0.0985 -2.89105 6.4666 0.0602339194805 0.859989718017 21215 Best 21215 21215;28062 3.756275 0.0861 -3.54118 7.297455 0.0448003118036 0.697563000872 19813 Best 19813 19813;34234 0.0 0.58968199013 chr21:30491712-30491957- ENST00000453638.2 NC not annotated potentially spurious 21763 474110 chr1:150364589-150364813- NoOverlap chr1 150364589 150364813 - 1.72513730119 75 0.780216169477 -0.535177323023 2.26031462421 ENST00000369067.7,ENST00000369068.4,ENST00000401000.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;150364588;225;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A150364589-150364813-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A150364589-150364813&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.116193897655 0.134207537314 0.728075383977 150337065 150337289 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;150337064;225;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A150364589-150364813-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A150337065-150337289&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QALNGLHGVGYRLEFSIQRGLQSPCRRGRRGGGLTAASAAAGRHLPGLHKRCCSSGGGGGGGGGSGQNNHCECVKAVGGEGS*GVGMVHALGSSGGTDGNTSCWAR Same 475991 chr1:150364589-150364813- 18274 18274 3489 3 451 150364575 150365278 648 648;949;21763 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:150364575-150365278&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.684444444444 0.96500257334 -0.50954 0.8572 -2.32124266667 1.81170266667 0.139829000988 0.575336662941 12300 3551 3551;5445;12300 -2.40690133333 0.5884 -8.47140666667 6.06450533333 0.287106357301 0.761764637261 4759 Best 4759 4759;6267;10462 0.0 0.0 ENST00000401000.8,ENST00000492220.1 AntiCDS,AntiNCintron not annotated putative regulatory region 21787 560443 chr4:157363420-157363455+ NoOverlap chr4 157363420 157363455 + 6.50000820557 12 0.876806286717 0.857558270295 5.64244993528 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;157363419;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157363420-157363455%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A157363420-157363455&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.1607946411 0.133969585079 0.830092878067 158284572 158284607 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;158284571;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157363420-157363455%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A158284572-158284607&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLFLSFPPLSFKMTLNDAMR Same 561427 chr4:157363420-157363455+ 20723 20723 1064 0 430 157360983 157365960 611 611;15695;15785;16090;17171;20574;21787;68912;71132 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:157360983-157365960&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.416666666667 0.0 6.885725 0.9814 0.895683333333 5.99004166667 0.276360397685 0.736376439344 6182 3893 3893;6182;6226;10710;11582;13344;21003;56071;56585 1.63843333333 0.8791 0.54345 1.09498333333 0.0164648950583 0.377999902754 28221 3522 3522;3805;7560;13336;15714;28221;29180;32592;39824 0.0 0.126939652477 chr11:105979575-105979739+ ENST00000264426.13,ENST00000471736.5 UTR3,NC coding exon(s) GRIA2 alternative final exon 21810 500708 chr14:22086919-22086954+ NoOverlap chr14 22086919 22086954 + 6.27222496271 12 0.761593041886 -0.417858302593 6.6900832653 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22086918;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22086919-22086954%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22086919-22086954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.10648947182 0.133736322743 0.925628112483 22555196 22555231 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22555195;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22086919-22086954%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22555196-22555231&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QFSSHIMDSQPGDSATYFCAASTQCSPGT None NA NA 0 300 22086679 22096605 401 401;4479;18994;21810 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22086679-22096605&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.0 0.488233333333 0.8763 -4.74518333333 5.23341666667 -0.0030464586178 0.689007848187 43077 1541 1541;23184;43077;62785 3.894425 0.3826 -3.45525 7.349675 0.0728474814153 0.633588799725 14730 2482 2482;8294;14730;26667 0.0 0.0 ENST00000390451.2 NC immunoglobulin segment overlaps an immunoglobulin region 21814 527284 chr19:12775496-12775525+ NoOverlap chr19 12775496 12775525 + 8.27006004453 10 0.872391851682 3.18779993057 5.08226011395 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12775495;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12775496-12775525%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12775496-12775525&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.193839892031 0.133714319425 0.714230314095 12886310 12886339 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12886309;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12775496-12775525%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12886310-12886339&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPGAAAASGSATSERPQPRPPARPR Same 528730 chr19:12775496-12775525+ 20380 20380 1434 0 96 12775496 12806530 113 113;1182;3126;12882;12916;19147;21814;28171;30495;34266;70783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12775496-12806530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 0.857142857143 3.76128 0.9551 -6.87898 10.64026 0.155565700011 0.989647522847 11177 845 845;1545;3224;5434;8474;11177;11868;16562;28502;47510;67609 -1.75281 0.4871 -15.09483 13.34202 0.0705993817957 0.843333581396 15095 40 40;3058;6466;7449;7608;8225;15095;31105;55016;67420;71961 0.0 0.105996202958 chr12:54499403-54499465+ ENST00000264827.9,ENST00000586284.5,ENST00000589400.5,ENST00000586719.5 AntiUTR5,AntiNC,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 21825 546240 chr21:8211372-8211437+ NoOverlap chr21 8211372 8211437 + 4.55414082923 22 0.590091346054 0.784563579343 3.76957724988 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8211371;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8211372-8211437%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8211372-8211437&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.125281877303 0.133593194627 0.740377421038 110819 110884 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;110818;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8211372-8211437%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A110819-110884&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPRIGPAGVGPRPWRSAEKTVELDYLEEVK Same 547654 chr21:8211372-8211437+ 22728 22728 -903 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.742424242424 1.10367892977 0.338640909091 0.2674 -0.926354545455 1.26499545455 0.00380474632485 0.430634775472 39595 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 1.76563181818 0.2118 -0.396236363636 2.16186818182 0.00587815263913 0.494893385052 32516 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 21896 582317 chr7:115679104-115679175- NoOverlap chr7 115679104 115679175 - 3.49335826437 24 0.876493476768 -0.180554237217 3.67391250158 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;115679103;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115679104-115679175-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A115679104-115679175&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.154854117929 0.132971601991 0.751480044522 115319158 115319229 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;115319157;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115679104-115679175-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A115319158-115319229&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLLRPESVEMLNLA*HPSWIIVGVGANQQKMSPQFK Same 583278 chr7:115679104-115679175- 21699 21699 197 8 5672 115673834 115679526 7911 7911;18821;19702;21896;25172;45048;57068 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:115673834-115679526&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.472222222222 0.0 -0.183291666667 1.0 -0.634225 0.450933333333 0.0115072725529 0.370147206009 36146 9148 9148;20280;33321;35228;35655;36146;49962 -1.55361666667 0.9201 -1.88021666667 0.3266 0.0258358805407 0.426775100124 25065 6859 6859;16053;21757;25065;26080;28039;62910 0.0 0.0 not annotated potentially spurious 21941 515305 chr16:86476526-86476564- NoOverlap chr16 86476526 86476564 - 5.75880769583 13 0.76722948982 -0.608230712895 6.36703840872 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;86476525;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A86476526-86476564-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A86476526-86476564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.102730280279 0.13255384542 0.914048953256 86510132 86510170 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;86510131;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A86476526-86476564-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A86510132-86510170&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCLCNQAATNEGKTAFMWHNIHR Same 516957 chr16:86476526-86476564- 21818 21818 123 0 13504 86476526 86476564 Best 21941 21941 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:86476526-86476564&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.487179487179 0.0 8.32325384615 0.974 -3.70209230769 12.0253461538 0.509527275599 1.03198205078 3074 Best 3074 3074 6.83398461538 0.5191 -10.8021692308 17.6361538462 0.406383853611 0.981739163512 3925 Best 3925 3925 0.0 0.0 ENST00000595886.1 NC not annotated potentially spurious 21977 547216 chr21:8399166-8399918- NoOverlap chr21 8399166 8399918 - 1.77362428499 251 0.133532186961 1.50783939998 0.265784885007 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8399165;753;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399166-8399918-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8399166-8399918&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.036465262057 0.132231087491 0.615756327404 159575 160327 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159574;753;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399166-8399918-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159575-160327&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGAGEGREGGAPGVGGAAAPRPAAARAQPRFAPQPDRPSP*SQSLSRSYGSGLPTSLTYIVPTCQRLFTLETCCGYGYGPARDLHPLPRIFKGQRELTGRRRNRDAFQGTGPSLGANPFQGALPFTKKRELSPGLPPASPGSVALPHWTPRGAHLRHSGFGDLNPTPFRSAEGNGGHRPSLRNGARPSLRTD*PMFNCCSHGTLLHFGLQSSRLNICYYHQDLHLRRLHPGPRPRLQGSPQRPSYSSRRSVRGAPGAGSGAWAGGGEEAWGGGGGGPHTPPPPPPPSDAHHTR Same 548618 chr21:8399166-8399918- 7373 7373 14604 99 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.667994687915 1.02032520325 -0.170380079681 0.2298 -0.574552589641 0.40417250996 0.0241220656586 0.620203780093 30955 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -2.57374860558 0.195 -3.58318565737 1.00943705179 0.0651037671105 0.487576403587 15978 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0866591020531 chr12:56601180-56601402- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 21978 547312 chr21:8443401-8444153- NoOverlap chr21 8443401 8444153 - 1.77362428499 251 0.133532186961 1.50783939998 0.265784885007 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8443400;753;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443401-8444153-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8443401-8444153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.036465262057 0.132231087491 0.615756327404 159575 160327 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159574;753;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443401-8444153-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159575-160327&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGAGEGREGGAPGVGGAAAPRPAAARAQPRFAPQPDRPSP*SQSLSRSYGSGLPTSLTYIVPTCQRLFTLETCCGYGYGPARDLHPLPRIFKGQRELTGRRRNRDAFQGTGPSLGANPFQGALPFTKKRELSPGLPPASPGSVALPHWTPRGAHLRHSGFGDLNPTPFRSAEGNGGHRPSLRNGARPSLRTD*PMFNCCSHGTLLHFGLQSSRLNICYYHQDLHLRRLHPGPRPRLQGSPQRPSYSSRRSVRGAPGAGSGAWAGGGEEAWGGGR Same 548715 chr21:8443401-8444153- 7374 7374 14604 99 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.667994687915 1.02032520325 -0.165610756972 0.2156 -0.534435458167 0.368824701195 0.0239333241319 0.618269189706 31034 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -1.58172948207 0.2147 -2.79850159363 1.21677211155 0.0919038949218 0.500868744437 12362 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 21987 520687 chr17:22519261-22519326- NoOverlap chr17 22519261 22519326 - 6.4579044445 22 0.419018290019 4.11737271872 2.34053172578 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;22519260;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A22519261-22519326-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A22519261-22519326&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.124912737908 0.132179757224 0.544888864943 22018587 22018652 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;22018586;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A22519261-22519326-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A22018587-22018652&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WFFLIYLGGTMVVFGYTMAMAIEEYPETWGSGIEVLVSVLVGLAMEVGLVSSVGTI Same 522101 chr17:22519261-22519326- 23320 23320 -1333 0 595 22519261 22522960 918 918;21987;31911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:22519261-22522960&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.439393939394 0.392857142857 5.54285 0.2307 2.51690454545 3.02594545455 0.0557727732035 0.59268347807 22004 8593 8593;22004;48706 17.4921681818 0.7014 7.55265454545 9.93951363636 0.724451272988 0.776308720768 2731 Best 2731 2731;2868;28944 0.0 0.772251602372 chrM:14149-14673- pseudogene mitochondrially encoded NADH dehydrogenase 6 (MT-ND6) pseudogene (ENSG00000283879) 21990 564511 chr5:77852273-77852299+ NoOverlap chr5 77852273 77852299 + 9.67155578401 9 0.810498207065 5.32836663723 4.34318914678 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;77852272;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77852273-77852299%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A77852273-77852299&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.194771057074 0.132135912327 0.576146490592 77148097 77148123 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;77148096;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77852273-77852299%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A77148097-77148123&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FQWRAVVPRMK Same 565499 chr5:77852273-77852299+ 20994 20994 996 0 1311 77844392 77852299 1970 1970;21990;36224;37985;59349;64374;70990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:77844392-77852299&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 1.15714285714 2.03482222222 0.9984 1.95835555556 0.0764666666667 -0.0229353216054 0.229217276453 56140 7731 7731;27249;28623;33111;43677;53467;56140 -10.0694666667 0.9253 -14.1007666667 4.0313 -0.0556677008028 0.446035056895 72923 5174 5174;34772;36018;49756;55548;66524;72923 0.0 0.0 ENST00000522370.1 AntiUTR5intron not annotated putative regulatory region 22010 513467 chr16:20720997-20721044- NoOverlap chr16 20720997 20721044 - 7.55976239778 16 0.275209811551 1.69218132645 5.86758107133 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;20720996;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20720997-20721044-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A20720997-20721044&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0243908316915 0.131924562437 0.881588316539 20732319 20732366 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;20732318;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A20720997-20721044-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A20732319-20732366&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HIVHQHLSPFYYSFTTFLTAVYSTHIIFFALNR Same 515114 chr16:20720997-20721044- 23960 23960 -1950 0 1174 20720997 20722053 1782 1782;2457;4589;12301;12422;13695;22010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:20720997-20722053&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.354166666667 0.923076923077 -0.179525 0.0191 -0.4248 0.245275 0.0383942527175 0.302249403254 26036 Best 26036 26036;26102;32372;32727;36194;41718;53953 42.1879125 0.6727 10.36769375 31.82021875 0.99532178173 1.02924346811 1188 937 937;1188;1352;1485;1530;1845;1949 0.0 0.894997667393 chrM:12337-14148+ ENST00000561584.5,ENST00000501740.6 AntiUTR5intron,AntiNCintron pseudogene mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene (ENSG00000283399) 22012 489530 chr11:114162936-114163040- NoOverlap chr11 114162936 114163040 - 4.06036003317 35 0.765069047074 3.72657707078 0.33378296239 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;114162935;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114162936-114163040-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A114162936-114163040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.42957924684 0.131903725135 0.385337683127 114033658 114033762 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;114033657;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114162936-114163040-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A114033658-114033762&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QFLFSFSSLPCTGLDGSQACINFCFGYSVFLEAHLQAIINSLECWQNIQTCRQASDDTTLGK Same 491515 chr11:114162936-114163040- 23503 23503 -1491 0 608 114160174 114164042 933 933;13272;22012;22975;35216;64783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:114160174-114164042&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.542857142857 0.518518518519 -0.606922857143 0.94 -1.34555428571 0.738631428571 0.00725203299005 0.446317022785 38000 5084 5084;14121;38000;47790;65893;71735 -4.12338 0.9007 -5.05970571429 0.936325714286 0.0306616877717 0.495754129398 23552 4785 4785;23552;42025;54566;64496;66305 0.0 0.0 ENST00000335953.8,ENST00000539918.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 22028 515946 chr17:2400736-2400792+ NoOverlap chr17 2400736 2400792 + 4.16565255115 19 0.860176763722 -0.332178837375 4.49783138852 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2400735;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400736-2400792%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2400736-2400792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.139585896682 0.131805070779 0.800529824947 2304030 2304086 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2304029;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400736-2400792%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2304030-2304086&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELPGARRGRGCGPRAGHRSGWRAGR Same 517322 chr17:2400736-2400792+ 21628 21628 400 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.842105263158 0.814285714286 -5.20183684211 0.984 -8.03376315789 2.83192631579 -0.0601914825776 0.52675522959 72507 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -7.15001052632 0.5572 -11.9688578947 4.81884736842 -0.00569242133982 0.566890390238 38406 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 ENST00000174618.4 AntiUTR5 not annotated putative regulatory region 22029 505796 chr14:105624689-105624730- NoOverlap chr14 105624689 105624730 - 5.76757842302 14 0.50008392462 -2.11787132706 7.88544975008 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105624688;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105624689-105624730-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105624689-105624730&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0307372997863 0.131795633462 1.01424429896 106091026 106091067 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106091025;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105624689-105624730-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106091026-106091067&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NQVSLTCLVKGFYPSDIAVEWESNGQPENNYK None NA NA 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.595238095238 0.291666666667 11.3254428571 0.743 -8.65594285714 19.9813857143 0.489938165773 0.971918333383 3210 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 13.1408428571 0.5681 -13.8291714286 26.9700142857 0.740659956046 1.06062632544 2665 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.126974923378 chr22:22895375-22895694+ ENST00000390543.3 NC immunoglobulin segment overlaps an immunoglobulin region 22048 577694 chr7:27156417-27156605+ NoOverlap chr7 27156417 27156605 + 2.37909522889 63 0.8597996224 0.853787311013 1.52530791788 ENST00000242159.4,ENST00000519842.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27156416;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27156417-27156605%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27156417-27156605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.255950947867 0.13171447642 0.637859281163 27196036 27196224 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27196035;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27156417-27156605%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27196036-27196224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEGAGARPVAASL*VGSKGARSRLGILEQRSPRRIFAKKRVHIIRRTHNFDL*FVVRQLSVSVLRGRVIYDNITPPDLHQTPFSFGR Same 578733 chr7:27156417-27156605+ 20867 20867 1181 24 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.502645502646 1.0988372093 -2.2786968254 0.992 -4.46172380952 2.18302698413 0.0718223103126 0.581297848855 19418 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -12.583031746 0.9883 -18.2078904762 5.62485873016 0.0603471475659 0.702002142394 16761 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000242159.4 AntiCDS not annotated putative regulatory region 22058 515947 chr17:2400996-2401112+ NoOverlap chr17 2400996 2401112 + 3.44285134474 39 0.859645560309 2.85732560318 0.585525741562 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2400995;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400996-2401112%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2400996-2401112&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.398743292237 0.131621670702 0.441649229387 2304290 2304406 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2304289;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400996-2401112%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2304290-2304406&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGTASLLPLPLYLPSDASRPAAPGSPADKKGLCNKMARRHRHTQQGKEPRCPRPPPPLLHR Same 517323 chr17:2400996-2401112+ 22599 22599 -541 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.692307692308 0.862407862408 1.26337692308 0.9102 -0.360633333333 1.62401025641 0.125677927877 0.563435522192 13464 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -3.6283974359 0.5712 -8.0276 4.3992025641 0.112062934321 0.660300530249 10448 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 ENST00000174618.4 AntiUTR5 not annotated putative regulatory region 22059 509511 chr15:75229590-75229646- NoOverlap chr15 75229590 75229646 - 4.1855210156 19 0.53961442861 -1.89415793042 6.07967894603 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;75229589;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A75229590-75229646-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A75229590-75229646&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0310656445344 0.13161795146 0.948067808493 75521931 75521987 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;75521930;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A75229590-75229646-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A75521931-75521987&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGPSPCELLWALYRKVKTSGHMLGNLSLAENSLTSDGESHPQPPLPQCLFTSPGGALGGLPGGIQLLP Same 511242 chr15:75229590-75229646- 22587 22587 -528 0 13552 75228852 75229646 Best 22059 22059;30056 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:75228852-75229646&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.561403508772 0.2375 2.58446315789 0.7219 -5.47041052632 8.05487368421 0.175659640763 0.949639850497 9959 5222 5222;9959 0.612705263158 0.3135 -7.48745263158 8.10015789474 0.097730406787 0.724155956745 11714 5529 5529;11714 0.0 0.0 ENST00000563803.1,ENST00000567079.1 NC,NCintron pseudogene unitary pseuodgene ENSG00000260660 22072 477085 chr10:27745779-27745817+ NoOverlap chr10 27745779 27745817 + 7.31705386822 13 0.717737439184 4.18222304491 3.13483082331 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;27745778;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A27745779-27745817%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A27745779-27745817&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.228074417009 0.131492735894 0.533196287183 28034708 28034746 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;28034707;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A27745779-27745817%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A28034708-28034746&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AHSHPRRMFSTRAPARSPPPPPSSR Same 478978 chr10:27745779-27745817+ 21915 21915 157 0 230 27741453 27745817 290 290;22072 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:27741453-27745817&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.74358974359 1.23157894737 4.48797692308 0.9473 2.05373846154 2.43423846154 0.0857768413889 0.452672093064 17519 3135 3135;17519 -5.89354615385 0.7326 -5.79652307692 -0.0970230769231 -0.0425091284704 0.334300311307 67029 11216 11216;67029 0.0 0.0 ENST00000419777.1,ENST00000375790.9 NCintron,AntiUTR5 not annotated putative regulatory region 22158 588989 chr9:38456161-38456193+ NoOverlap chr9 38456161 38456193 + 8.16858190298 11 0.801693751431 4.95141807469 3.21716382829 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;38456160;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A38456161-38456193%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A38456161-38456193&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.231169635564 0.130709622425 0.50121668283 38456158 38456190 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;38456157;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A38456161-38456193%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A38456158-38456190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLNGTCTSSVDMELFLHYSLIPSVSK Same 589933 chr9:38456161-38456193+ 21303 21303 855 0 144 38456161 38469956 172 172;271;22158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:38456161-38469956&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.454545454545 0.0 12.6668272727 0.9334 3.7676 8.89922727273 0.465273232128 0.879269177269 3383 185 185;508;3383 23.1885818182 0.5083 3.79860909091 19.3899727273 0.673380357087 0.941375139126 2913 21 21;39;2913 0.0 0.0 pseudogene STRA6-like (Stra6l) pseudogene (ENSG00000283162) 22229 483272 chr11:1109647-1109697+ NoOverlap chr11 1109647 1109697 + 5.8166824027 17 0.496934282983 0.900952922947 4.91572947975 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1109646;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1109647-1109697%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1109647-1109697&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0801659950258 0.130101789656 0.814713489823 1103555 1103605 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1103554;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1109647-1109697%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1103555-1103605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSITFMPNGCCKTCEYR Same 485202 chr11:1109647-1109697+ 22936 22936 -707 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.529411764706 0.0 11.1642705882 0.9342 -4.5069 15.6711705882 0.735127964222 1.0296628369 1956 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 13.0071882353 0.6499 -5.81757058824 18.8247588235 0.737582927914 1.00760698431 2683 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.0778738538838 chrX:50915757-50916607+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 22254 546501 chr21:16588460-16588516+ NoOverlap chr21 16588460 16588516 + 4.24391057303 19 0.808072022583 -0.123036859851 4.36694743288 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;16588459;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16588460-16588516%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A16588460-16588516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.144584837931 0.129879768465 0.785396759849 17960780 17960836 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;17960779;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16588460-16588516%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A17960780-17960836&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LE*QRHANAAVQQVWERVDAR Same 547917 chr21:16588460-16588516+ 21898 21898 356 2 5231 16588460 16588760 7260 7260;14761;22254;32313 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:16588460-16588760&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.578947368421 0.235537190083 -1.94543684211 0.9693 -3.29656842105 1.35113157895 -0.038412467456 0.412509966113 65667 3953 3953;23524;44551;65667 -9.26315789474 0.6879 -10.5559526316 1.29279473684 -0.042304907013 0.413058053688 66878 14629 14629;66878;69840;73603 0.0 0.0 ENST00000400178.6 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 22255 515951 chr17:2401142-2401189+ NoOverlap chr17 2401142 2401189 + 5.92448742315 16 0.845227740902 3.97408752702 1.95039989613 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2401141;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401142-2401189%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2401142-2401189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.294396297949 0.129874967155 0.431299798843 2304436 2304483 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2304435;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401142-2401189%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2304436-2304483&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGAALPPAAAPATTPGPQPKPGPEPPPAGPRRLAK Same 517327 chr17:2401142-2401189+ 21663 21663 592 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8125 0.913043478261 3.1550125 0.8779 1.3580125 1.797 0.0454189555986 0.429873108588 24203 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -0.7266125 0.5743 -5.49335 4.7667375 0.0538847761982 0.561975395494 17961 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 not annotated putative regulatory region 22257 473675 chr1:114091905-114091934- NoOverlap chr1 114091905 114091934 - 10.4524400592 10 0.591551079576 8.22406015396 2.22837990522 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;114091904;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A114091905-114091934-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A114091905-114091934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.199652820161 0.129866196935 0.317750019392 114634527 114634556 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;114634526;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A114091905-114091934-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A114634527-114634556&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QCCAVAVAAAAAAVR None NA NA 0 501 114091905 114092085 743 743;22257 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:114091905-114092085&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 0.692307692308 3.95749 0.7802 6.73799 -2.7805 -0.012532623447 0.0498251222792 48876 366 366;48876 -0.18127 0.4475 4.37027 -4.55154 -0.0313395980088 0.162582059479 58318 1317 1317;58318 0.0 0.0 ENST00000369547.5,ENST00000610096.1 UTR3,NC coding exon(s) SYT6 alternative final exon 22277 546254 chr21:8215162-8215530+ NoOverlap chr21 8215162 8215530 + 1.99647478384 123 0.402788555237 0.875593480056 1.12088130378 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8215161;369;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215162-8215530%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8215162-8215530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0705214625112 0.12973632176 0.593759716325 114627 114995 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;114626;369;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215162-8215530%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A114627-114995&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASPEEGDGGASARGRRRRRLPTRPVLKHGPRSLTRARVGGSHESRRGAMKVKAGALAGRGGIPRPLQSAEGAPPARLARRAGEVEHERTC*DPKDGELCLGRAKPEETLVEVRSGPDVQIGRPTWV*GRKTNRTI Same 547667 chr21:8215162-8215530+ 15501 15501 6776 44 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.672086720867 1.15946582875 -1.23468211382 0.269 -1.4536398374 0.218957723577 -0.0147125789582 0.462218438453 50405 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -3.16319918699 0.2843 -3.3124601626 0.14926097561 0.0132603267291 0.528563526991 29437 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 22295 539484 chr2:88814284-88814436- NoOverlap chr2 88814284 88814436 - 3.61089608219 51 0.23224979318 0.157956918081 3.45293916411 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;88814283;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88814284-88814436-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A88814284-88814436&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0568303885273 0.129589443122 0.865779958493 89113798 89113950 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;89113797;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88814284-88814436-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A89113798-89113950&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESAHLSDMAICGSALHFHDSLYHGTTGILYMSAAVLQVHVMIMSEAQDLRNYCINTAALVSELAVDSK Same 540862 chr2:88814284-88814436- 21535 21535 760 0 13661 88811636 88818414 Best 22295 22295;30258;34396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:88811636-88818414&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.516339869281 0.196153846154 4.39575882353 0.2696 0.251066666667 4.14469215686 0.1804477032 0.848303874302 9685 Best 9685 9685;15690;17244 12.5749921569 0.2795 -0.0584137254902 12.6334058824 0.742864891597 0.963753074077 2655 677 677;2655;3050 0.75207135806 chr2:110087572-110087697- 0.825831314077 chr2:110087572-110087697- ENST00000624935.3 NCintron pseudogene mal, T-cell differentiation protein-like (MALL) unprocessed pseudogene (ENSG00000283270) 22298 546499 chr21:16539102-16539161+ NoOverlap chr21 16539102 16539161 + 5.16534004956 20 0.871396963455 4.47888513207 0.68645491749 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;16539101;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16539102-16539161%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A16539102-16539161&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.354974015692 0.129560731173 0.315280358752 17911422 17911481 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;17911421;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16539102-16539161%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A17911422-17911481&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TRRSDLVVKWTAQARFYGSVSVW Same 547915 chr21:16539102-16539161+ 22155 22155 143 0 5108 16534450 16539161 7083 7083;22298;38303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:16534450-16539161&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.55 0.888888888889 4.709505 0.9999 3.888415 0.82109 0.199337046061 0.376169183154 8805 Best 8805 8805;11748;56400 -0.34087 0.9134 -4.132425 3.791555 0.070235964274 0.550193350422 15150 Best 15150 15150;17720;61409 0.0 0.0 ENST00000384906.1,ENST00000400178.6 NC,NCintron not annotated ancient miRNA 22308 560663 chr4:183797108-183797137+ NoOverlap chr4 183797108 183797137 + 8.47638995647 10 0.638951705196 1.39712008238 7.0792698741 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;183797107;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A183797108-183797137%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A183797108-183797137&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.121145030207 0.129483210181 0.903951421017 184718261 184718290 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;184718260;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A183797108-183797137%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A184718261-184718290&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WEVGAGVERGEERHSPLR Same 561651 chr4:183797108-183797137+ 23923 23923 -1615 0 258 183797080 183798363 336 336;22308;39732;60389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:183797080-183798363&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 1.02564102564 -0.84854 0.9277 -17.29123 16.44269 0.119591549876 1.04178590673 13984 532 532;13984;57259;61548 -3.78659 0.432 -20.28403 16.49744 0.0717545222018 0.933833233315 14910 649 649;14910;57149;60548 0.0 0.0739016035691 chr1:6578653-6579584+ coding exon(s) STOX2 alternative first coding exon 22314 579673 chr7:142408099-142408131+ NoOverlap chr7 142408099 142408131 + 7.05431816795 11 0.761206017603 0.477790930054 6.57652723789 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142408098;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142408099-142408131%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142408099-142408131&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.126480753562 0.129427766519 0.897619406498 142223857 142223825 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142223856;-31;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142408099-142408131%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142223857-142223825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IQPAELGDSAMYLCASSLATALQR None NA NA 0 362 142381077 142408131 503 503;2671;2771;4607;6492;14294;16204;21550;22314 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142381077-142408131&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.636363636364 0.3 -1.28611818182 0.9099 -9.16944545455 7.88332727273 -0.00559216189326 0.865072794704 44473 2259 2259;2284;2682;2903;3300;3654;22326;44473;52081 8.70849090909 0.4943 -6.61 15.3184909091 0.331912679722 0.900291970591 4345 2619 2619;2643;2937;3046;3257;3635;4345;4428;8592 0.0 0.0 ENST00000390367.3 NC immunoglobulin segment overlaps an immunoglobulin region 22343 573825 chr6:12585160-12585219- NoOverlap chr6 12585160 12585219 - 4.14222003371 20 0.975272755016 -0.183090028167 4.32531006187 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;12585159;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A12585160-12585219-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A12585160-12585219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.135068093426 0.12916558325 0.790219388993 12585392 12585451 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;12585391;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A12585160-12585219-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A12585392-12585451&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STDGFIKYNHFLEFLGQCSRSR Same 574854 chr6:12585160-12585219- 25546 25546 -3203 0 13675 12585160 12585219 Best 22343 22343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:12585160-12585219&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.803571428571 -3.03004 0.9994 -5.09361 2.06357 -0.044711081442 0.475765407062 69071 Best 69071 69071 -7.627495 0.7107 -10.992415 3.36492 -0.020185349238 0.51104082356 48246 Best 48246 48246 0.0 0.0 ENST00000457945.1 NC not annotated potentially spurious 22344 552739 chr3:71005901-71005975+ NoOverlap chr3 71005901 71005975 + 3.51078400135 25 0.98001373312 -0.0455680537224 3.55635205507 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;71005900;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71005901-71005975%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A71005901-71005975&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.1485352341 0.129163249985 0.745090899752 71055052 71055126 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;71055051;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71005901-71005975%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A71055052-71055126&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YILGWLRKNKIILDLYL*VWDFLDS Same 553680 chr3:71005901-71005975+ 25276 25276 -2932 7 1139 71003497 71007603 1733 1733;12046;22344;31751;34119;35077;44486;44775 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:71003497-71007603&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.44 0.281954887218 -0.971788 1.0 -2.606808 1.63502 0.0116597415297 0.47720455632 36085 3178 3178;6887;32675;36085;37626;45905;46741;64024 -3.438132 0.6441 -7.623656 4.185524 0.0611626405046 0.592333758108 16615 10807 10807;16615;30087;31390;48859;55997;64759;66587 0.0 0.0 ENST00000318789.8,ENST00000327590.8 AntiCDSintron,AntiNCintron not annotated putative regulatory region 22392 492604 chr12:89353060-89353104+ NoOverlap chr12 89353060 89353104 + 4.19003313904 15 0.858060578317 -2.58724671205 6.77727985109 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;89353059;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89353060-89353104%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A89353060-89353104&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0126617786587 0.128630224945 0.969551357453 89746837 89746881 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;89746836;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89353060-89353104%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A89746837-89746881&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPSSVCSDVLLAEAVLGLVN*LGFSDR Same 494586 chr12:89353060-89353104+ 22058 22058 334 6 1997 89351989 89353104 2898 2898;3067;8028;9679;12637;22392;31672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:89351989-89353104&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.577777777778 0.338345864662 -3.92411333333 0.9914 -9.3108 5.38668666667 -0.0278558582002 0.713330791963 59195 3934 3934;7220;23441;23638;59195;70262;73002 -6.10015333333 0.3959 -13.39842 7.29826666667 0.00360686535173 0.644432715245 33580 3920 3920;22214;30464;33580;34681;56829;66039 0.0 0.0 ENST00000611513.1,ENST00000279488.7 NC,AntiUTR5 not annotated putative regulatory region 22411 474680 chr1:161314361-161314396- NoOverlap chr1 161314361 161314396 - 6.7105752031 12 0.7605808601 0.992574941367 5.71800026173 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;161314360;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A161314361-161314396-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A161314361-161314396&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.148690733656 0.128506149275 0.834872034666 161284151 161284186 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;161284150;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A161314361-161314396-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A161284151-161284186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHLGFRSGRK*RQAAPPPEGGGAPAGGR Same 476559 chr1:161314361-161314396- 22212 22212 199 6 359 161305675 161314396 498 498;22411 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:161305675-161314396&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.75 0.989010989011 -2.35296666667 0.9184 -2.55796666667 0.205 -0.0347169757618 0.279130092375 63498 1139 1139;63498 3.34376666667 0.4064 2.47774166667 0.866025 0.00394211198911 0.366956425991 33422 2112 2112;33422 0.0 0.0 ENST00000367975.6,ENST00000515731.1 AntiUTR5,AntiNC not annotated MPZ known STOP codon readthrough event 22431 486201 chr11:117356027-117356089+ NoOverlap chr11 117356027 117356089 + 2.81336184059 21 0.852726460234 -3.19950968311 6.0128715237 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;117356026;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117356027-117356089%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A117356027-117356089&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0773824289913 0.128316773187 0.960441107451 117226743 117226805 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;117226742;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A117356027-117356089%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A117226743-117226805&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQKPSLSGPDLESSSSSSSNSNLASHLGSPVLDEVNNFPWNLQSSR Same 488160 chr11:117356027-117356089+ 22589 22589 -158 0 347 117354932 117356374 476 476;2729;7100;15490;19164;22431 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:117354932-117356374&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.571428571429 0.0 3.30523333333 0.9672 -7.46173809524 10.7669714286 0.467169439401 1.05957223395 3370 650 650;1071;2341;2829;3370;5930 11.176547619 0.5083 -6.67915714286 17.8557047619 0.713703767632 1.01439800884 2765 1307 1307;2765;2996;3723;3958;5242 0.0 0.0 ENST00000533675.5,ENST00000278935.7 NC,CDSintron coding exon(s) CEP164 cassette exon 22434 518000 chr17:48310888-48310998+ NoOverlap chr17 48310888 48310998 + 3.1345621581 37 0.950153724335 1.81611890567 1.31844325243 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48310887;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48310888-48310998%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48310888-48310998&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.29522328539 0.128304853664 0.532272778164 46388250 46388360 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46388249;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48310888-48310998%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46388250-46388360&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGEMMEFIATHINTETK*LCCHLSPTERRMVNLTCRWYYPIAIFYSPFAAPPG Same 519401 chr17:48310888-48310998+ 22217 22217 217 16 10925 48307328 48313286 16723 16723;17599;22434;62115;67342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48307328-48313286&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.423423423423 0.403636363636 -0.700389189189 0.9991 -0.0191081081081 -0.681281081081 -0.0055326745387 0.323909651617 44437 9986 9986;10392;16724;44437;45878 -6.48358108108 0.6617 -3.33282162162 -3.15075945946 -0.0481029863262 0.326298989216 70554 16697 16697;17787;63179;68455;70554 0.0 0.0 ENST00000336915.10,ENST00000581400.2 AntiCDSintron,AntiNCintron not annotated potentially spurious 22455 483315 chr11:1991242-1991307+ NoOverlap chr11 1991242 1991307 + 3.44448173215 22 0.607872268115 -1.86134079099 5.30582252314 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1991241;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1991242-1991307%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1991242-1991307&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0209379194651 0.128164724477 0.908500211249 2012472 2012537 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;2012471;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1991242-1991307%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A2012472-2012537&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAPSQQAGLQVGFQEGAPAGFPQPWK Same 485246 chr11:1991242-1991307+ 23928 23928 -1473 0 13721 1991242 1991307 Best 22455 22455 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1991242-1991307&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.712121212121 0.239130434783 1.64365454545 0.7938 -7.25673181818 8.90038636364 0.241559824162 1.00953845534 7230 Best 7230 7230 -5.15797727273 0.4036 -17.9180818182 12.7601045455 0.162909881125 0.902830492594 7427 Best 7427 7427 0.0 0.15358409696 chr1:1599335-1600015- ENST00000418612.1 NC not annotated potentially spurious 22491 497200 chr12:120219198-120219236- NoOverlap chr12 120219198 120219236 - 6.02362309396 13 0.830656548761 0.637646225783 5.38597686818 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;120219197;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A120219198-120219236-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A120219198-120219236&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.154880977915 0.127947029535 0.820716020505 120657001 120657039 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;120657000;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A120219198-120219236-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A120657001-120657039&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EQPELPCAMAMGTPSTTERISTSGQAGTSSHGCWAWPLAGLSVGR Same 499208 chr12:120219198-120219236- 21524 21524 967 0 288 120216252 120219548 378 378;1189;3047;10568;22491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:120216252-120219548&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.641025641026 0.253246753247 8.87212307692 0.9657 2.06354615385 6.80857692308 0.396493721848 0.799008451704 4055 479 479;873;2418;4055;5885 15.1824 0.6786 4.61333076923 10.5690692308 0.526848977913 0.732688608664 3435 428 428;560;1751;2468;3435 0.0 0.0 ENST00000323871.9,ENST00000228307.11,ENST00000538144.5 NC,CDSintron,NCintron coding exon(s) PXN 2 cassette exons 22533 518067 chr17:48596023-48596055+ NoOverlap chr17 48596023 48596055 + 5.46485471184 11 0.891049196474 -2.47129982168 7.93615453352 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48596022;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48596023-48596055%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48596023-48596055&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0220927379677 0.127668179229 1.00122931476 46673385 46673417 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46673384;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48596023-48596055%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46673385-46673417&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESSRPPLRGQRIYH*TVHGGHGQNETR Same 519468 chr17:48596023-48596055+ 21808 21808 725 3 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.545454545455 0.814814814815 -2.96958181818 0.966 -11.5162454545 8.54666363636 -0.0104380724451 0.897736791364 47407 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -8.13330909091 0.4762 -19.7606909091 11.6273818182 0.00146465449919 0.763510377671 34639 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000460041.5,ENST00000429755.8,ENST00000225648.3,ENST00000552000.2 NC,NCintron,AntiUTR3,AntiNCintron not annotated putative regulatory region 22537 531725 chr19:48485639-48485755- NoOverlap chr19 48485639 48485755 - 3.02140250649 39 0.643164251633 0.549607700262 2.47179480623 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48485638;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48485639-48485755-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48485639-48485755&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.13460217987 0.127630960419 0.699637355112 48988896 48989012 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48988895;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48485639-48485755-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48988896-48989012&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPDPAAPSEEGLRMESSVDDGATATTADAASGEAPEAGPSPSHSPTMCQTGGPGPPPPSPPDGSPDPPDPLGAK Same 533200 chr19:48485639-48485755- 24347 24347 -1810 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.700854700855 0.494565217391 6.15831794872 0.872 2.17770512821 3.98061282051 0.516828217172 0.794247261823 3033 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 3.38923333333 0.411 -1.59811282051 4.98734615385 0.262668721202 0.696370119628 5042 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.0 ENST00000270238.3 UTR3 coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 22580 732312 chrX:12717136-12717162+ Extension chrX 12717136 12717162 + 8.43731105824 9 0.80426743979 1.06188903915 7.3754220191 chrX:12716068-12717162+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;12717135;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A12717136-12717162%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A12717136-12717162&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.124507038349 0.12721624101 0.915440140918 12735255 12735281 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;12735254;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A12717136-12717162%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A12735255-12735281&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLDNAVVSTLGALEALSVSEEQQTSDNSGSFTIVTFIH Same 732913 chrX:12717136-12717162+ 21862 21862 718 0 228 12717136 12721843 286 286;461;7085;22580 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:12717136-12721843&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.296296296296 0.0 11.3014 0.9226 -3.15554444444 14.4569444444 0.403062926273 1.02639749209 3972 475 475;724;3972;5318 23.6277222222 0.9082 -8.32214444444 31.9498666667 0.88861645841 1.04676803342 2159 309 309;1117;2159;2328 0.0 0.0 ENST00000380682.5 ExtensionMid coding exon(s) FRMPD4 3' extended final exon 22616 508108 chr15:24212417-24212452- NoOverlap chr15 24212417 24212452 - 6.99375840028 12 0.399631240304 -9.51883308093 16.5125914812 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;24212416;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A24212417-24212452-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A24212417-24212452&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0094816750971 0.126865059791 0.952080638828 24457564 24457599 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;24457563;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A24212417-24212452-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A24457564-24457599&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VHLSLDPCLANGRAFTS*ITQK Same 509827 chr15:24212417-24212452- 17123 17123 5493 3 1352 24212291 24212452 2027 2027;22616 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:24212291-24212452&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.388888888889 0.0 -0.415025 0.1271 -4.52983333333 4.11480833333 0.0259991019247 0.596536056101 30244 20493 20493;30244 1.53345833333 0.0722 -2.31420833333 3.84766666667 -0.000499807555238 0.49067946369 35617 12108 12108;35617 0.0 0.0 ENST00000568541.1 AntiNCintron not annotated putative regulatory region 22680 522792 chr17:64501803-64501862- NoOverlap chr17 64501803 64501862 - 5.20543987155 20 0.989030289158 4.49044981599 0.714990055561 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;64501802;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64501803-64501862-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A64501803-64501862&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.32076319833 0.126338089944 0.318571386105 62497921 62497980 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;62497920;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64501803-64501862-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A62497921-62497980&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HDNRRTRGGWRTSDRLAASSR Same 524226 chr17:64501803-64501862- 23743 23743 -1063 0 785 64497052 64506947 1219 1219;1314;11116;12743;15272;20390;22680;57720;59551 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:64497052-64506947&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.833333333333 0.694385 0.946 2.11313 -1.418745 -0.0183939470856 0.198514911255 53023 3317 3317;9751;12985;29872;53023;54218;61045;63372;66796 -9.919785 0.9068 -7.68997 -2.229815 -0.0484222234021 0.28352618953 70711 5759 5759;11482;17125;20897;41797;70711;70752;72223;73201 0.0 0.0 ENST00000580026.5,ENST00000225792.9,ENST00000540698.6 NC,CDSintron,NCintron coding exon(s) DDX5 alternative first exon 22696 481953 chr10:102395633-102395692- NoOverlap chr10 102395633 102395692 - 4.4518801108 20 0.706900129702 0.629130008817 3.82275010198 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102395632;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102395633-102395692-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102395633-102395692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.154336489894 0.126225948331 0.72935257609 104155390 104155449 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104155389;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102395633-102395692-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104155390-104155449&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESPENTKGRRGRRGRAWK*R Same 483870 chr10:102395633-102395692- 23361 23361 -665 1 470 102395633 102432561 680 680;6932;11855;22696;25308;48284;57642;69925;70124;70146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102395633-102432561&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.854700854701 -1.260355 0.9015 -6.183295 4.92294 0.0265170987069 0.727991289133 30034 2246 2246;9900;30034;37715;42789;48132;52915;53220;64824;73530 -5.32532 0.4332 -12.442925 7.117605 0.0390853221976 0.677239194758 21243 715 715;21243;24877;42637;43017;45832;46589;56731;57300;70842 0.0 0.0347901696145 chr2:113201158-113201415+ ENST00000369966.7,ENST00000593908.5 AntiUTR5intron,AntiNCintron coding exon(s) PSD alternative first exon 22742 542615 chr2:241897179-241897295- NoOverlap chr2 241897179 241897295 - 2.57866408848 39 0.325315695469 -2.40098204922 4.9796461377 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;241897178;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A241897179-241897295-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A241897179-241897295&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000230639694293 0.125779173428 0.970068967443 242839330 242839446 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;242839329;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A241897179-241897295-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A242839330-242839446&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAYDSGGIKMFWEKKIEHHARHLQNEDIRVRRSALNK*VGVCSASGTPMPEPR Same 543993 chr2:241897179-241897295- 21012 21012 1730 1 13856 241897179 241897295 Best 22742 22742 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:241897179-241897295&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.487179487179 1.04731457801 6.32178205128 0.4151 -3.46654358974 9.78832564103 0.414201351634 1.07737551597 3850 Best 3850 3850 7.37352051282 0.3473 -6.1269025641 13.5004230769 0.643034573129 0.98701012427 3012 Best 3012 3012 0.0 0.363995101789 chr14:103126458-103126692+ ENST00000401641.2,ENST00000415434.5 NC,AntiNCintron protein-coding gene protein coding gene ENSG00000216921 22792 521799 chr17:45519176-45519232- NoOverlap chr17 45519176 45519232 - 5.62694734335 19 0.5065031542 1.83339479566 3.79355254769 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;45519175;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45519176-45519232-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A45519176-45519232&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.106163548652 0.125380184729 0.707281626965 43596542 43596598 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;43596541;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45519176-45519232-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A43596542-43596598&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NYTSTELTVEPEEPSDSSGINLSGFGSEQLDTNDESDVISALSYICHISQQ Same 523224 chr17:45519176-45519232- 23534 23534 -742 0 76 45517900 45519352 86 86;4762;12425;22792 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:45517900-45519352&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.421052631579 0.407142857143 11.8400631579 0.7863 -1.27860526316 13.1186684211 0.642190244613 1.05039402604 2339 1028 1028;2157;2339;6777 10.3334315789 0.3221 -6.34987368421 16.6833052632 0.468338341586 0.984276635147 3658 2008 2008;3658;3994;7340 0.883342384751 chr17:46548312-46549843+ 0.780422108955 chr17:46548312-46549843+ ENST00000581296.1 NCintron pseudogene LRRC37A4P transcribed unprocessed pseudogene (ENSG00000282331) 22826 487331 chr11:16807082-16807204- NoOverlap chr11 16807082 16807204 - 3.04114638596 41 0.916717375002 1.97372683592 1.06741955004 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;16807081;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A16807082-16807204-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A16807082-16807204&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.320471070685 0.125051269025 0.517908266903 16828629 16828751 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;16828628;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A16807082-16807204-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A16828629-16828751&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TFDQRALQSAEEVSTGLSAQEKRKMI*SVSPSGVIPLLLARCR Same 489303 chr11:16807082-16807204- 22464 22464 362 16 102 16807082 16815297 122 122;22826;24982 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:16807082-16815297&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.552845528455 0.863157894737 -1.75846829268 0.996 -2.83114878049 1.0726804878 2.2484992401e-05 0.480835216579 41496 113 113;21779;41496 -9.33502682927 0.6894 -13.0032926829 3.66826585366 0.00505211654051 0.607287962212 32924 790 790;6548;32924 0.0 0.0 ENST00000355661.7,ENST00000525581.2,ENST00000525049.5 CDSintron,UTR5intron,NCintron coding exon(s) PLEKHA7 multiple coding exons 22905 529349 chr19:58581769-58581825+ NoOverlap chr19 58581769 58581825 + 5.83683155712 19 0.433305626162 1.70682092089 4.13001063623 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;58581768;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58581769-58581825%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A58581769-58581825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0671704262468 0.124429419785 0.746226748529 59093136 59093192 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;59093135;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58581769-58581825%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A59093136-59093192&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PESFGAGRG*FAGFKARHSLSSIGASGPR Same 530808 chr19:58581769-58581825+ 23751 23751 -846 9 462 58578105 58581980 664 664;10695;22905;23620;29825;45792 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:58578105-58581980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.684210526316 1.06684491979 16.2331894737 0.4888 3.91733684211 12.3158526316 0.442969988119 1.03193125306 3572 12 12;3572;4861;7429;7858;42404 37.4050368421 0.5007 9.57202631579 27.8330105263 0.878765799449 1.0386994272 2199 2070 2070;2199;2636;3032;3216;7342 0.0 0.352669463419 chr16:89971359-89971922- ENST00000493504.1,ENST00000473164.1 NC,NCintron pseudogene CENPBD1P1 CENPB DNA-binding domains containing 1 pseudogene 1 (ENSG00000285138) 22914 555623 chr3:49115888-49115917- NoOverlap chr3 49115888 49115917 - 7.25655999184 10 1.0 0.43984991312 6.81671007872 ENST00000306026.5,ENST00000398888.6,ENST00000398892.7,ENST00000398896.5,ENST00000398898.6,ENST00000417901.5,ENST00000434032.6,ENST00000453664.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;49115887;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A49115888-49115917-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A49115888-49115917&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0899723688991 0.124343844547 0.903857469142 49153321 49153350 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;49153320;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A49115888-49115917-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A49153321-49153350&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPCRQVQPLWIQPHQEVLPTP Same 556577 chr3:49115888-49115917- 24690 24690 -1776 0 525 49108464 49120972 782 782;6927;11608;22914;38563 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:49108464-49120972&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.566666666667 0.454545454545 3.20716 0.9926 0.93797 2.26919 0.0257937123604 0.411119552425 30342 1900 1900;11326;19488;30342;47390 -19.58682 0.9172 -21.19281 1.60599 -0.0053603665801 0.286063927869 38234 2475 2475;12326;33524;38234;67129 0.0 0.0 ENST00000306026.5 CDS under investigation USP19 potential non-ATG start 22956 509064 chr15:62256060-62256086- NoOverlap chr15 62256060 62256086 - 11.0608888732 9 0.391724523791 2.85675560104 8.20413327217 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;62256059;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A62256060-62256086-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A62256060-62256086&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0661471104077 0.124031227594 0.906673516302 62548259 62548285 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;62548258;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A62256060-62256086-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A62548259-62548285&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPAKPGRALKRQLEVSGGCEVPSCPLENVAFLLFQHLLGFSPK Same 510788 chr15:62256060-62256086- 23052 23052 -96 0 698 62246165 62256086 1081 1081;16980;22956 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:62246165-62256086&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.518518518519 0.0 21.8012222222 0.6484 6.14462222222 15.6566 0.223535041153 0.955098912945 7857 49 49;830;7857 19.7190333333 0.3564 5.15688888889 14.5621444444 0.29419850436 0.808743858288 4690 462 462;2638;4690 0.848413279329 chr9:128265970-128266020- 0.637392368663 chr15:75287929-75287979+ ENST00000562660.1 NCintron pseudogene extension golgin subfamily A pseudogene extended (ENSG00000166104) 22975 489532 chr11:114163901-114163954- NoOverlap chr11 114163901 114163954 - 4.21806659798 18 0.907392996109 -0.694433311621 4.9124999096 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;114163900;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114163901-114163954-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A114163901-114163954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.106228751667 0.12387280273 0.835744728443 114034623 114034676 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;114034622;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114163901-114163954-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A114034623-114034676&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLSNEGALKPRCSTGSKICRACWANDK Same 491517 chr11:114163901-114163954- 23351 23351 -376 0 608 114160174 114164042 933 933;13272;22012;22975;35216;64783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:114160174-114164042&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.89010989011 -3.30964444444 0.9791 -4.78565555556 1.47601111111 -0.0533265162756 0.414805567341 71735 5084 5084;14121;38000;47790;65893;71735 -16.03195 0.7939 -17.2882166667 1.25626666667 -0.0389933892613 0.356543702312 64496 4785 4785;23552;42025;54566;64496;66305 0.0 0.0 ENST00000335953.8,ENST00000539918.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 22982 561230 chr4:17884568-17884726- NoOverlap chr4 17884568 17884726 - 2.05030941851 53 0.825300897835 -0.501003775956 2.55131319446 ENST00000382224.5,ENST00000382226.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17884567;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17884568-17884726-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17884568-17884726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0962257873789 0.123814127444 0.756093346103 17886191 17886349 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17886190;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17884568-17884726-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17886191-17886349&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TMWKEVLSLQMVCSQKL*KTFSLEHWT*IKQAYFMAYLKKLYFFT*KPYQQGSLHLLK Same 562221 chr4:17884568-17884726- 22326 22326 656 35 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.415094339623 0.0 -0.598488679245 1.0 -2.38133018868 1.78284150943 0.128512999576 0.584825257083 13202 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 -12.0788698113 0.922 -12.5996943396 0.520824528302 -0.0368179527041 0.484256082845 62820 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0450504878521 chr10:96954953-96955922+ ENST00000382224.5,ENST00000326877.8,ENST00000510121.5 CDS,CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 22997 504795 chr14:76134284-76134358- NoOverlap chr14 76134284 76134358 - 3.32480802655 25 0.883582818341 -0.236620054245 3.5614280808 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;76134283;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76134284-76134358-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A76134284-76134358&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.141055559829 0.123710560509 0.746550373103 76600627 76600701 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;76600626;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76134284-76134358-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A76600627-76600701&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WSMPPALCLHLLCQRQHGREASAEEISLHFGKVMKAGLGGG Same 506641 chr14:76134284-76134358- 22906 22906 91 0 1204 76131383 76139120 1818 1818;4345;22997;27107;30537;31486;38498;41376;68067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:76131383-76139120&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586666666667 0.961538461538 -1.120128 0.996 -3.8649 2.744772 0.031009262828 0.576006325747 28296 4515 4515;9493;16210;27689;28296;48242;62795;67676;71399 -7.401364 0.8963 -10.217996 2.816632 -0.0124522351765 0.518512420894 42486 13549 13549;42486;43506;45749;54311;55020;58474;69721;73189 0.0 0.0 not annotated putative regulatory region 23010 529197 chr19:53204022-53204120+ NoOverlap chr19 53204022 53204120 + 3.9365242521 33 0.314198519875 -0.261324205182 4.19784845728 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;53204021;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A53204022-53204120%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A53204022-53204120&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0171822951095 0.12360476667 0.870384505516 53707275 53707373 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;53707274;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A53204022-53204120%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A53707275-53707373&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTFRDVAIEFSQEEWKCLDPAQRALYRDVMLENYR Same 530656 chr19:53204022-53204120+ 22977 22977 33 0 5132 53204022 53212191 7119 7119;23010;34818;59931 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:53204022-53212191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.535353535354 0.45 11.2969787879 0.5841 -2.31142727273 13.6084060606 0.828866984545 1.0350506693 1567 Best 1567 1567;2158;4633;8326 25.1544818182 0.5275 -7.96654242424 33.1210242424 1.04925721045 0.981692628061 332 Best 332 332;671;880;1494 0.353425677715 chr19:53075057-53075183- 0.498709539215 chr19:53075057-53075183- ENST00000597550.5 NC pseudogene zinc finger protein pseudogene (ENSG00000269001) 23079 522543 chr17:58328649-58328684- NoOverlap chr17 58328649 58328684 - 5.74996676544 12 0.698097708604 -2.04058341682 7.79055018226 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;58328648;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A58328649-58328684-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A58328649-58328684&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0315038021978 0.123124782331 0.998715405448 56406010 56406045 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;56406009;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A58328649-58328684-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A56406010-56406045&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QAAHRPRPP*DQPSHPASER Same 523971 chr17:58328649-58328684- 24172 24172 -1093 3 927 58324435 58331258 1430 1430;23079;35188;45808;68388 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:58324435-58331258&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.694444444444 0.264705882353 6.74395 0.975 -4.68760833333 11.4315583333 0.392736780032 1.01949639849 4098 3022 3022;4098;31103;33297;53580 2.43558333333 0.4396 -10.6069833333 13.0425666667 0.158931032023 0.852069088588 7618 4412 4412;7618;50126;62080;66751 0.0 0.0 ENST00000268893.10,ENST00000579527.5 UTR5,AntiNCintron not annotated putative regulatory region 23081 547215 chr21:8399165-8399917- NoOverlap chr21 8399165 8399917 - 1.70878404498 251 0.133532186961 1.58559039674 0.123193648232 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8399164;753;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399165-8399917-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8399165-8399917&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0408086006591 0.123109925679 0.603084423268 159574 160326 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159573;753;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399165-8399917-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159574-160326&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVGRGRAARGVPRAWGGRRRLVQPRRAPSPASRPSPTDPALRANPYPEVTDPACRLPLPTLFQHARGCSPWRPAADMGTARREIYTLSPGFSRASESSPDAAGTATLSKARAPLSGRTHSRAPCPSQRKENSPRGSRRLLRDRSRYRTGRLAAPISATPDSGI*TRLPFDRPRATEAIARPFGTALAHLSGPTDPCSTAVHMEPFSTSAFKVLV*IFATTTKICTCGGSTRARALGFKAHRSGPPTRRGVASAGLR Same 548617 chr21:8399165-8399917- 7744 7744 15337 90 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.667994687915 1.02032520325 0.0241964143426 0.2299 -0.146464541833 0.170660956175 0.0224145009845 0.60780973584 31637 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -2.00155179283 0.1952 -2.41533984064 0.413788047809 0.0626248188767 0.477256875006 16372 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0865703119895 chr12:56601180-56601402- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 23082 547311 chr21:8443400-8444152- NoOverlap chr21 8443400 8444152 - 1.70878404498 251 0.133532186961 1.58559039674 0.123193648232 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8443399;753;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443400-8444152-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8443400-8444152&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0408086006591 0.123109925679 0.603084423268 159574 160326 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159573;753;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443400-8444152-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159574-160326&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVGRGRAARGVPRAWGGRRRLVQPRRAPSPASRPSPTDPALRANPYPEVTDPACRLPLPTLFQHARGCSPWRPAADMGTARREIYTLSPGFSRASESSPDAAGTATLSKARAPLSGRTHSRAPCPSQRKENSPRGSRRLLRDRSRYRTGRLAAPISATPDSGI*TRLPFDRPRATEAIARPFGTALAHLSGPTDPCSTAVHMEPFSTSAFKVLV*IFATTTKICTCGGSTRARALGFKAHRSGPPTRRGVASAGLR Same 548714 chr21:8443400-8444152- 7745 7745 15337 90 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.667994687915 1.02032520325 0.00149482071713 0.2157 -0.102699203187 0.104194023904 0.0208936209052 0.604011512425 32240 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -1.19402828685 0.2147 -1.53441553785 0.340387250996 0.0800841844378 0.481762819968 13799 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 23157 586888 chr8:64380061-64380096- NoOverlap chr8 64380061 64380096 - 7.00793329875 12 0.917600010173 2.97458337449 4.03334992426 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;64380060;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64380061-64380096-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A64380061-64380096&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.211524609031 0.122542944115 0.639199016024 65292618 65292653 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;65292617;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64380061-64380096-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A65292618-65292653&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAPRTAPGREGAATLVHPLSSSPLFPTPAGQGR Same 587829 chr8:64380061-64380096- 22608 22608 549 0 5341 64368369 64380096 7413 7413;23157;28942;34300;70170;70979;72036 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:64368369-64380096&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 0.9375 5.64160833333 0.9733 0.711333333333 4.930275 0.184882577841 0.655474607652 9455 Best 9455 9455;23665;25300;33558;51744;54451;62241 3.48196666667 0.423 1.766525 1.71544166667 0.0143769777892 0.400846222129 29002 Best 29002 29002;44391;44674;45945;47356;48925;63213 0.0 0.0 ENST00000519741.1 AntiNCintron not annotated potentially spurious 23189 479586 chr10:129839157-129839207+ NoOverlap chr10 129839157 129839207 + 5.73706479809 17 0.918973696139 4.74474705317 0.992317744914 ENST00000440978.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129839156;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129839157-129839207%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129839157-129839207&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.316035027106 0.122219836278 0.320409183039 131637421 131637471 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131637420;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129839157-129839207%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131637421-131637471&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASLSSPRLRPQHPAESLVHSR Same 481491 chr10:129839157-129839207+ 23198 23198 -9 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.588235294118 0.708333333333 1.70242352941 0.9775 -3.10267058824 4.80509411765 0.120460083397 0.703759125715 13899 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 2.41330588235 0.3459 -3.02070588235 5.43401176471 0.0724576936945 0.598271340251 14793 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000440978.1,ENST00000355311.9 AntiCDS,AntiCDSintron not annotated potentially spurious 23248 495282 chr12:51810574-51810603- NoOverlap chr12 51810574 51810603 - 6.09973004758 10 0.894421301595 -1.96680980921 8.06653985679 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;51810573;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51810574-51810603-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A51810574-51810603&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00319624322801 0.121661617075 0.996750302463 52204358 52204387 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52204357;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51810574-51810603-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52204358-52204387&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WIVEYKYCTKDLATK Same 497280 chr12:51810574-51810603- 22183 22183 1065 0 145 51807534 51814833 173 173;1274;1566;23248;41728 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:51807534-51814833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4 0.0 -0.3902 1.0 -1.90284 1.51264 -0.0391088900148 0.360115979278 66049 290 290;1358;1512;2640;66049 -11.14109 0.4958 -6.53861 -4.60248 0.000200727925993 0.155230184772 35256 69 69;2037;2228;5219;35256 0.0 0.0 ENST00000565518.1,ENST00000354534.10 NC,AntiUTR3 protein-coding gene protein-coding gene ENSG00000284730 23299 492528 chr12:79934559-79934609+ NoOverlap chr12 79934559 79934609 + 5.31991755261 17 0.792435115497 2.35801768303 2.96189986958 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;79934558;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A79934559-79934609%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A79934559-79934609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.233597820879 0.121370562732 0.582390219678 80328339 80328389 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;80328338;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A79934559-79934609%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A80328339-80328389&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGLKPSALPSTSSPSRPLGKPPPHPAAGSLPPPPASR Same 494510 chr12:79934559-79934609+ 22821 22821 478 0 1500 79934559 79935332 2233 2233;6832;14345;23299 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:79934559-79935332&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.745098039216 0.728571428571 4.56138235294 0.9374 -1.18036470588 5.74174705882 0.242774980932 0.778160988644 7188 Best 7188 7188;11401;16080;58885 1.46583529412 0.5097 -4.61835294118 6.08418823529 0.114507975711 0.625959321992 10259 8714 8714;10259;11130;55960 0.0 0.0 ENST00000261207.9 AntiCDSintron not annotated putative regulatory region 23312 503434 chr14:23094851-23094910- NoOverlap chr14 23094851 23094910 - 4.60911988989 20 0.897878995956 2.18327505067 2.42584483922 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23094850;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23094851-23094910-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23094851-23094910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.257317742569 0.12131499571 0.548384731835 23564060 23564119 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23564059;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23094851-23094910-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23564060-23564119&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DEPLPRRRRSIRARRELAQAASASLWIR Same 505273 chr14:23094851-23094910- 23094 23094 218 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.783333333333 1.19565217391 0.531935 0.991 -5.707525 6.23946 0.162992261468 0.838452202326 10725 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 -4.752145 0.553 -12.45284 7.700695 0.0706820992452 0.703423385308 15078 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 ENST00000262710.5,ENST00000319074.5 CDSintron,AntiUTR5 protein-coding gene protein-coding gene ENSG00000283654 23389 478479 chr10:100876667-100876708+ NoOverlap chr10 100876667 100876708 + 5.22990708692 14 0.776897840848 -0.784742819411 6.01464990633 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100876666;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100876667-100876708%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100876667-100876708&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.088277009277 0.120728881888 0.897910960409 102636424 102636465 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102636423;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100876667-100876708%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102636424-102636465&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETGSSWGLQAFVRVM*ATSDKGPETQLDQTHK Same 480374 chr10:100876667-100876708+ 23180 23180 209 5 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52380952381 0.0 2.10219285714 0.9999 -0.0411928571429 2.14338571429 0.051855943493 0.443427826441 22740 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 2.58290714286 0.4655 -2.26957142857 4.85247857143 0.0687598430484 0.549097905216 15364 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 23393 577682 chr7:27150955-27151002+ NoOverlap chr7 27150955 27151002 + 5.3409749344 16 0.864089799344 1.79393128306 3.54704365134 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27150954;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27150955-27151002%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27150955-27151002&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.216383878168 0.120700642478 0.647036325953 27190574 27190621 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27190573;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27150955-27151002%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27190574-27190621&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGLQLAPVPATATAWQQRAPAR Same 578721 chr7:27150955-27151002+ 22632 22632 761 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8125 1.13684210526 4.97808125 0.9154 2.91606875 2.0620125 0.12318619352 0.448907046701 13677 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 2.3000375 0.3866 2.31694375 -0.01690625 0.00723771878428 0.363634100919 31942 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000524304.1,ENST00000518848.5,ENST00000467897.2 NC,NCintron,AntiNCintron not annotated putative regulatory region 23431 563915 chr5:37840558-37840587+ NoOverlap chr5 37840558 37840587 + 7.11781024337 10 0.824380865187 -0.101829969883 7.21964021325 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;37840557;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37840558-37840587%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A37840558-37840587&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0946375220156 0.120430818218 0.936152325351 37840660 37840689 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;37840659;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37840558-37840587%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A37840660-37840689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELPAGVLAPRRRGAERPGEGSR Same 564903 chr5:37840558-37840587+ 22366 22366 1065 0 1098 37834655 37842122 1665 1665;3432;9737;17708;23431;43248;66339;67574 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:37834655-37842122&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 1.14285714286 -2.94217 0.908 -9.07367 6.1315 -0.0361773923135 0.734538958966 64403 4518 4518;14736;23580;58453;64403;65427;67583;67906 -12.83609 0.4252 -16.70311 3.86702 -0.0167400338861 0.427393007279 45609 5584 5584;29735;41849;43350;44494;45609;51811;60370 0.0 0.0 ENST00000503382.6 NC not annotated putative regulatory region 23464 577302 chr7:10940506-10940532+ NoOverlap chr7 10940506 10940532 + 6.76055550575 9 0.78774530997 -2.489533431 9.25008893675 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;10940505;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A10940506-10940532%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A10940506-10940532&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00573832799805 0.120149229737 1.02860663231 10980133 10980159 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;10980132;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A10940506-10940532%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A10980133-10980159&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPGPRAEALGARVPGAR Same 578341 chr7:10940506-10940532+ 23308 23308 156 0 14188 10940506 10940532 Best 23464 23464 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:10940506-10940532&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.851851851852 1.07142857143 -3.03172222222 0.8438 -17.1621888889 14.1304666667 0.0357530750284 1.05112452251 26765 Best 26765 26765 -5.32313333333 0.3413 -19.3837444444 14.0606111111 0.0106305234065 0.846101296278 30503 Best 30503 30503 0.0 0.0 ENST00000604183.1 NC not annotated potentially spurious 23472 538845 chr2:62090379-62090462- NoOverlap chr2 62090379 62090462 - 2.66696068857 28 0.280043379219 -5.61979287969 8.28675356827 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62090378;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62090379-62090462-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62090379-62090462&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00502593244645 0.120082002712 1.06760631818 62317514 62317597 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62317513;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62090379-62090462-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62317514-62317597&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCDNLDIEDQAFLAFDLYPPQDVISMETNWPEETLNVLDSDLVSVLQSSNKIYHR Same 540223 chr2:62090379-62090462- 20118 20118 3354 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.345238095238 0.0 -0.198764285714 0.0448 -1.23844642857 1.03968214286 0.0275045100062 0.444973784089 29681 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 -0.198764285714 0.014 -1.23844642857 1.03968214286 -0.0343015212895 0.479469548759 60891 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 23498 588343 chr9:8437052-8437081+ NoOverlap chr9 8437052 8437081 + 6.22533010244 10 0.965944914931 -1.60887010694 7.83420020938 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;8437051;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A8437052-8437081%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A8437052-8437081&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00541010936366 0.119926874099 0.984048552646 8437052 8437081 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;8437051;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A8437052-8437081%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A8437052-8437081&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VMTFMPFQTPSPALCEMEIVWN Same 589289 chr9:8437052-8437081+ 24373 24373 -875 0 934 8437052 8438823 1439 1439;10011;23498;48565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:8437052-8438823&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.0 -0.81109 0.9973 -2.97938 2.16829 -0.0421994466429 0.415279716344 67818 18912 18912;32674;56844;67818 -19.90554 0.904 -22.001 2.09546 -0.00508952018342 0.297020842523 38054 17802 17802;21160;38054;45986 0.0 0.0 ENST00000355233.9 AntiCDSintron coding exon(s) PTPRD cassette exon 23499 494107 chr12:3303911-3303937- NoOverlap chr12 3303911 3303937 - 11.1618668371 9 0.542107270924 8.41051108307 2.751355754 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3303910;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3303911-3303937-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3303911-3303937&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.154617351014 0.119923440084 0.343529218313 3413077 3413103 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3413076;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3303911-3303937-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3413077-3413103&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLTSSLCLPLQFKCYGCNSSATGSAAR Same 496102 chr12:3303911-3303937- 25467 25467 -1968 0 531 3298233 3307795 799 799;1890;3339;6900;15956;21198;23499 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3298233-3307795&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.75 20.9657777778 0.9909 16.0967555556 4.86902222222 0.597891754325 0.431692684693 2555 197 197;419;1376;1520;1852;2555;9275 33.7417777778 0.7548 16.8752 16.8665777778 0.930400894917 0.797400641397 1939 223 223;711;903;924;1207;1939;10886 0.874811488998 chr12:30982532-30982690+ 0.918312139871 chr12:30982532-30982690+ pseudogene tetraspanin 11 (TSPAN11) pseudogene (ENSG00000250770); single locus on multiple rows 23504 577653 chr7:27140286-27140351+ NoOverlap chr7 27140286 27140351 + 4.23062267087 22 0.962124333285 1.63060465455 2.60001801632 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27140285;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27140286-27140351%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27140286-27140351&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.228551691544 0.119878950859 0.593185083977 27179905 27179970 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27179904;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27140286-27140351%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27179905-27179970&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTLMAPRDVL*PVSRSVCAMDDFTI Same 578692 chr7:27140286-27140351+ 24821 24821 -1317 8 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.484848484848 1.03529411765 -0.231895454545 0.9901 -0.452277272727 0.220381818182 -0.00382968887801 0.338484934743 43500 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -4.39354545455 0.9116 -1.76075 -2.63279545455 -0.0322790543541 0.294175438328 59145 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NCintron,AntiNCintron not annotated putative regulatory region 23556 551736 chr3:28576153-28576206+ NoOverlap chr3 28576153 28576206 + 3.81738893191 18 0.744374083399 -1.95398881369 5.7713777456 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;28576152;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576153-28576206%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A28576153-28576206&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.023051528933 0.119429299599 0.918373505809 28617644 28617697 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;28617643;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A28576153-28576206%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A28617644-28617697&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAEGRARGRRPLLGEPCVPR Same 552673 chr3:28576153-28576206+ 24137 24137 -581 0 983 28576036 28576517 1505 1505;5038;5448;7957;10074;23556 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:28576036-28576517&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.875 4.26273333333 0.7611 -2.26467777778 6.52741111111 0.182294582346 0.846057689278 9594 2378 2378;7891;9594;33970;37362;68747 0.719088888889 0.3896 -8.94926111111 9.66835 0.149113239455 0.778766703482 8065 2933 2933;5925;8065;10942;38452;44104 0.0 0.0 ENST00000432518.6 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 23607 501055 chr14:29390288-29390314+ NoOverlap chr14 29390288 29390314 + 8.82857807477 9 0.893810771174 3.30948891242 5.51908916235 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;29390287;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A29390288-29390314%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A29390288-29390314&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.164934028825 0.11899195515 0.73522990874 29859494 29859520 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29859493;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A29390288-29390314%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29859494-29859520&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLISFEPSSQMWWERGQDEGP Same 502947 chr14:29390288-29390314+ 21739 21739 1868 0 14267 29380951 29390501 Best 23607 23607;27512;35606;68965;71384 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:29380951-29390501&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 1.38461538462 -4.082 0.9706 -4.51216666667 0.430166666667 -0.024307869069 0.290007109203 57031 16283 16283;37208;54952;57031;73776 -3.03816666667 0.7689 -4.08262222222 1.04445555556 -0.0418843083955 0.352810988828 66595 24002 24002;41979;56295;66595;73483 0.0 0.0 not annotated potentially spurious 23620 529352 chr19:58581942-58581980+ NoOverlap chr19 58581942 58581980 + 6.78625388644 13 0.374897735209 -3.34148469223 10.1277385787 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;58581941;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58581942-58581980%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A58581942-58581980&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0079238354922 0.118848325658 1.04915382927 59093309 59093347 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;59093308;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58581942-58581980%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A59093309-59093347&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LWLVFTMNKPRFLCK Same 530811 chr19:58581942-58581980+ 21726 21726 1894 0 462 58578105 58581980 664 664;10695;22905;23620;29825;45792 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:58578105-58581980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.538461538462 0.0 15.3148615385 0.4623 -13.1848 28.4996615385 0.235881863816 1.00363355216 7429 12 12;3572;4861;7429;7858;42404 22.9199615385 0.3963 -8.93116923077 31.8511307692 0.582132516496 1.04390101382 3216 2070 2070;2199;2636;3032;3216;7342 0.0 0.046769164373 chr16:89971359-89971922- ENST00000493504.1,ENST00000473164.1 NC,NCintron pseudogene CENPBD1P1 CENPB DNA-binding domains containing 1 pseudogene 1 (ENSG00000285138) 23728 491874 chr12:54262548-54262583+ NoOverlap chr12 54262548 54262583 + 5.70862484972 12 1.0 -1.14249161383 6.85111646354 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;54262547;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A54262548-54262583%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A54262548-54262583&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0286683473205 0.118083249339 0.942850228141 54656332 54656367 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;54656331;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A54262548-54262583%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A54656332-54656367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEAGKDDDIVLMECVLS Same 493852 chr12:54262548-54262583+ 27991 27991 -4263 0 3518 54259577 54262648 4874 4874;23728;33864 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:54259577-54262648&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 0.6 1.48483333333 0.9931 -0.379216666667 1.86405 0.00545918905867 0.401759238786 38827 15707 15707;31997;38827 -7.35249166667 0.4376 -3.02875833333 -4.32373333333 -0.0207369719001 0.180192221378 48702 13904 13904;48702;50672 0.0 0.0 ENST00000209875.8 AntiUTR5intron not annotated potentially spurious 23729 517326 chr17:39410286-39410357+ NoOverlap chr17 39410286 39410357 + 4.09261252483 24 0.857748404161 2.36010424544 1.73250827938 ENST00000300651.10 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;39410285;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A39410286-39410357%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A39410286-39410357&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.283425730702 0.118081975033 0.495095687435 37566539 37566610 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;37566538;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A39410286-39410357%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A37566539-37566610&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VHEHRVVLGVAGHRRDRWRRVMRRGR Same 518722 chr17:39410286-39410357+ 23487 23487 242 0 535 39402672 39410654 809 809;14508;23729;24139;52387 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:39402672-39410654&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.638888888889 1.05882352941 -1.72477083333 1.0 -1.53172916667 -0.193041666667 -0.0418779634685 0.310286258386 67635 6041 6041;10767;32183;36588;67635 -32.35655 0.9862 -30.6028291667 -1.75372083333 0.0182203850276 0.148904123425 27606 4722 4722;27606;32663;35437;64135 0.0 0.0 ENST00000300651.10,ENST00000577831.5,ENST00000394287.7 AntiCDS,AntiNC,AntiCDSintron not annotated putative regulatory region 23742 479195 chr10:121951751-121951777+ NoOverlap chr10 121951751 121951777 + 9.30789989895 9 0.753505760281 3.90664437082 5.40125552813 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;121951750;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A121951751-121951777%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A121951751-121951777&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.158117844214 0.117969566914 0.710083522435 123711266 123711292 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;123711265;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A121951751-121951777%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A123711266-123711292&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SEGENSKQRHAQK Same 481100 chr10:121951751-121951777+ 23527 23527 215 0 763 121951540 121951927 1171 1171;1532;3401;23742 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:121951540-121951927&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.642857142857 7.43681111111 0.9335 6.62914444444 0.807666666667 0.0516736381943 0.256523550952 22772 1494 1494;1612;3896;22772 7.53302222222 0.3344 2.75728888889 4.77573333333 0.0254387663363 0.489318101186 25178 2854 2854;2954;4862;25178 0.0 0.0 ENST00000437593.1 NC pseudogene unitary pseudogene ENSG00000226864 23798 512287 chr16:72425830-72425943+ NoOverlap chr16 72425830 72425943 + 3.06395793883 38 0.839597161822 1.64483947032 1.4191184685 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72425829;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425830-72425943%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72425830-72425943&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.284555554217 0.117477144233 0.551660032419 72459729 72459842 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72459728;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425830-72425943%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72459729-72459842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KLQGRMAEELAPCHPFRGNATVSCDSSSGYMIRGPVCGPDSAVKPR Same 513931 chr16:72425830-72425943+ 24136 24136 -338 0 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.587719298246 0.748592870544 0.0642078947368 0.9989 -0.417326315789 0.481534210526 0.0662433428082 0.439985796291 20251 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -5.35511052632 0.8187 -2.86127894737 -2.49383157895 -0.0280461953771 0.358143397518 55348 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000561611.2,ENST00000624829.3 AntiNC,AntiNCintron not annotated potentially spurious 23824 539230 chr2:73080301-73080339- NoOverlap chr2 73080301 73080339 - 6.28054607144 13 0.907645356856 1.9129383713 4.36760770014 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;73080300;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73080301-73080339-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A73080301-73080339&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.190142988067 0.117289742383 0.703299690861 73307429 73307467 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;73307428;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73080301-73080339-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A73307429-73307467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESEESDSCSSATLLGQPGLEELVEDASPPVSGPCLSAPASCPEGPAPIPCHSK Same 540608 chr2:73080301-73080339- 23261 23261 563 0 311 73071669 73081530 418 418;1129;1310;1891;4235;7622;14465;18194;23824;54581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:73071669-73081530&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.0 4.80677692308 0.9837 0.260515384615 4.54626153846 0.175717493286 0.637302105965 9955 166 166;734;1495;1711;1973;3802;9955;14922;47668;73713 -3.8029 0.4487 -10.9933769231 7.19047692308 0.010065261763 0.632788874754 30735 2300 2300;2572;2797;3173;3182;4993;30735;31537;41635;57875 0.0 0.0 ENST00000258098.6,ENST00000482554.5 CDSintron,NCintron coding exon(s) RAB11FIP5 2kb cassette exon 23849 514859 chr16:72425938-72425979- NoOverlap chr16 72425938 72425979 - 5.16669284446 14 0.841702906844 -0.631564182895 5.79825702735 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72425937;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425938-72425979-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72425938-72425979&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0952459416209 0.117103319664 0.879212222293 72459837 72459878 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72459836;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425938-72425979-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72459837-72459878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AHSWSSLGCNPGTCAFGCCLLFAPGGLDNLPWLYRTVWPAYR Same 516509 chr16:72425938-72425979- 23038 23038 811 0 5346 72425674 72429311 7419 7419;20359;21636;23849;24685;27931;29808;67419;67757;69819;71722 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425674-72429311&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.571428571429 0.622222222222 -2.8129 0.9992 -2.93819285714 0.125292857143 -0.0468648775165 0.285856736632 69981 9185 9185;30001;30975;34321;44342;61179;63064;63782;69032;69981;73105 -8.43929285714 0.6475 -8.6452 0.205907142857 -0.043241966372 0.344526659456 67573 15117 15117;16880;44158;45925;52647;58331;62919;63425;64625;67483;67573 0.0 0.0 ENST00000561611.2,ENST00000624829.3,ENST00000564508.2 NC,NCintron,AntiNC not annotated potentially spurious 23891 553773 chr3:151803778-151803810+ NoOverlap chr3 151803778 151803810 + 8.27296358889 11 0.704961262892 4.77217266776 3.50079092112 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;151803777;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A151803778-151803810%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A151803778-151803810&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.191362776812 0.11672572694 0.535788441863 151521566 151521598 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;151521565;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A151803778-151803810%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A151521566-151521598&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPPTSDENVTVR Same 554722 chr3:151803778-151803810+ 23924 23924 -33 0 3981 151803778 151803906 5501 5501;23891 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:151803778-151803906&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.393939393939 0.0 9.89964545455 0.8366 7.15444545455 2.7452 0.133244494848 0.427470807379 12818 3175 3175;12818 12.4029545455 0.4371 9.0513 3.35165454545 0.139679738382 0.435379205949 8549 3109 3109;8549 0.613004343907 chr3:151817366-151817588+ 0.7099507316 chr3:151817366-151817588+ ENST00000485020.1,ENST00000475855.1 NC,AntiNCintron pseudogene arylacetamide deacetylase (esterase) (AADAC) unprocessed pseudogene (ENSG00000250271) 23912 490584 chr12:7621220-7621318+ NoOverlap chr12 7621220 7621318 + 4.68739396695 33 0.232511426927 0.783015183879 3.90437878307 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;7621219;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7621220-7621318%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A7621220-7621318&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0277094712152 0.116618305917 0.837840851498 7773816 7773914 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;7773815;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7621220-7621318%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A7773816-7773914&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TALLAGNLAQAGASVDQTIFSLHLANISSMLDATNFNSY Same 492560 chr12:7621220-7621318+ 24706 24706 -794 0 1000 7620539 7637633 1528 1528;3369;23912;30341;31797;32931;38172;38567;44054;46877;50926 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:7620539-7637633&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.353535353535 0.0 -1.43411818182 0.0816 -2.20584242424 0.771724242424 0.0126627120862 0.433624326992 35677 27370 27370;27482;29856;29976;30397;31757;32126;32399;32690;35677;37405 50.9120030303 0.6761 24.522769697 26.3892333333 0.954782381259 1.04602836642 1765 310 310;676;714;1056;1511;1634;1765;1772;2213;2416;4434 0.0 0.77680027693 chrM:5904-7445+ pseudogene mitochondrial protein pseudogene region (ENSG00000284591) 23940 536004 chr2:175441588-175441614+ NoOverlap chr2 175441588 175441614 + 7.77520007557 9 0.97369344625 0.595799909698 7.17940016588 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;175441587;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441588-175441614%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A175441588-175441614&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0815077294007 0.116345970542 0.913056755965 176306316 176306342 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;176306315;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441588-175441614%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A176306316-176306342&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AIMTDGNWHRCSAFAHHR Same 537367 chr2:175441588-175441614+ 23550 23550 390 0 2593 175431262 175442589 3667 3667;23940;24312;30353;42328;47431;68426;71581;72593 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:175431262-175442589&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.675 -0.8823 1.0 -1.51078888889 0.628488888889 -0.0447991823791 0.284723113514 69104 9400 9400;12533;13565;26288;43072;56059;57986;61202;69104 -3.47496666667 0.913 -6.51756666667 3.0426 -0.0371965711396 0.430827979452 63121 6205 6205;6835;9148;28284;38003;50257;61246;63121;67251 0.0 0.0 ENST00000438963.1 NCintron not annotated potentially spurious 23964 481120 chr10:75405184-75405432- NoOverlap chr10 75405184 75405432 - 1.66603615844 83 0.77288471809 -0.133477110461 1.7995132689 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75405183;249;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75405184-75405432-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75405184-75405432&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.161593610693 0.116152130876 0.661623446448 77164942 77165190 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77164941;249;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75405184-75405432-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77164942-77165190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QSGTVWVLWARLSSSPGLTCQADYLRGRLIGEAGCNNNRFV*CDNSDRR*FTYKLIGF*LSASAEPEMKGKRR*KAARLPSGLNTD*PSRQ Same 483034 chr10:75405184-75405432- 18002 18002 5962 49 3027 75401238 75417825 4228 4228;6685;19248;23964;26231;42519;58489;66465;71052;72621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75401238-75417825&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.542168674699 0.937749224634 -0.967606024096 1.0 -1.3562313253 0.388625301205 0.148198726042 0.42029672233 11699 9680 9680;11699;11870;23869;27311;40902;43730;53944;63556;72593 -5.19414337349 0.927 -6.10238313253 0.908239759036 0.140879756832 0.535925271686 8483 Best 8483 8483;11906;14750;22472;22714;29979;35309;42843;42916;72930 0.0 0.0 ENST00000425916.4 AntiNCintron not annotated putative regulatory region 23976 500749 chr14:22493948-22493977+ NoOverlap chr14 22493948 22493977 + 6.19114017487 10 0.913298237583 -1.65352995396 7.84467012882 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22493947;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22493948-22493977%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22493948-22493977&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00452579104733 0.11608954087 0.984902658262 22962934 22962963 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22962933;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22493948-22493977%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22962934-22962963&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLAQSVYSGGGADGLTFGKGTHLIIQPCK None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 9.29084 0.9827 -5.09966 14.3905 0.489607882961 1.03453649295 3213 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 15.09995 0.3933 -3.8439 18.94385 0.366200360192 0.959884949612 4142 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390492.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 24016 588654 chr9:23826500-23826604+ NoOverlap chr9 23826500 23826604 + 2.50014854074 35 0.962363840478 -0.645894294977 3.14604283571 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23826499;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23826500-23826604%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23826500-23826604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.092761132202 0.115833695724 0.763882258803 23826498 23826602 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23826497;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23826500-23826604%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23826498-23826602&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DDWLWACVTLESSMESRFKVSCAGRYTLNTGGEGKCKKQKEMWREQRGR Same 589600 chr9:23826500-23826604+ 25140 25140 -1124 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.504761904762 0.886824324324 -0.422982857143 0.9937 -3.56552571429 3.14254285714 0.12236480289 0.671323713323 13744 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -3.47245428571 0.5387 -4.83288 1.36042571429 0.0334325286219 0.515965959447 22739 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 not annotated putative regulatory region 24060 497010 chr12:114895933-114895968- NoOverlap chr12 114895933 114895968 - 5.66147505213 12 0.908372116681 -1.00611675034 6.66759180247 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;114895932;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A114895933-114895968-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A114895933-114895968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.056788206634 0.115452075532 0.929782313286 115333738 115333773 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;115333737;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A114895933-114895968-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A115333738-115333773&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVYIQHHYRQGRQAK Same 499018 chr12:114895933-114895968- 23630 23630 430 0 1355 114895933 114896645 2030 2030;24060;26560 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:114895933-114896645&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.654545454545 -0.53645 0.9935 -10.8878333333 10.3513833333 0.0955628928731 0.994989922179 16359 4432 4432;4802;16359 -9.43905833333 0.6002 -20.5852083333 11.14615 -0.00360570527648 0.744024277555 37215 7292 7292;15708;37215 0.0 0.0 not annotated putative regulatory region 24062 491705 chr12:53677193-53677399+ NoOverlap chr12 53677193 53677399 + 3.11540433289 69 0.79503263551 2.94847243895 0.166931893946 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;53677192;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53677193-53677399%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A53677193-53677399&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.440195655641 0.115437665566 0.461326726798 54070977 54071183 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;54070976;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53677193-53677399%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A54070977-54071183&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAVCPPLLGPVLPAAPSRLPGPAAPRPRAPPFNRIWEKGRINHGSSFTVPEERRAADRHTPAGDKNRR*KPTEQFPGTPSDAITGM Same 493683 chr12:53677193-53677399+ 24057 24057 5 17 511 53675817 53677539 760 760;1200;7057;16551;24062;35589 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:53675817-53677539&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.657004830918 1.03051948052 -1.71195217391 0.9578 -0.751413043478 -0.960539130435 -0.0109813620103 0.294793846607 47754 2429 2429;5561;6811;18771;39125;47754 -4.63149710145 0.4601 -4.11511594203 -0.51638115942 0.0249081354278 0.476914777829 25359 4274 4274;6621;14008;15709;25359;38314 0.0 0.0 ENST00000552242.5 AntiUTR5 not annotated putative regulatory region 24071 561549 chr4:41879454-41879489- NoOverlap chr4 41879454 41879489 - 6.29951665799 12 0.820735739172 0.525633310278 5.77388334771 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41879453;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41879454-41879489-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41879454-41879489&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.130108870888 0.115383965749 0.845572291252 41881471 41881506 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41881470;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41879454-41879489-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41881471-41881506&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WMDMKICRYYCLSFNLTK Same 562540 chr4:41879454-41879489- 23049 23049 1022 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.361111111111 1.2 -3.91758333333 0.9542 -2.65553333333 -1.26205 -0.023504906357 0.186915556853 56504 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -11.0179416667 0.8762 -8.492725 -2.52521666667 -0.0360472395226 0.228127022202 62284 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 ENST00000504870.1 NCintron not annotated putative regulatory region 24095 493774 chr12:123762213-123762248+ NoOverlap chr12 123762213 123762248 + 8.56179177264 12 0.341691462577 2.51239993796 6.04939183469 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;123762212;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A123762213-123762248%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A123762213-123762248&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0304370651615 0.115142335879 0.838281007089 124246760 124246795 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;124246759;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A123762213-123762248%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A124246760-124246795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GALPSLQPPAPAPSAGRAAAVSGAPIAR Same 495764 chr12:123762213-123762248+ 25706 25706 -1611 0 37 123762213 123762579 39 39;24095;62478 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:123762213-123762579&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.861111111111 1.05 1.70049166667 0.4094 1.94230833333 -0.241816666667 -0.00783955564963 0.230951060178 45787 899 899;44723;45787 7.281025 0.2978 7.29785833333 -0.0168333333333 0.0126494724509 0.325191963866 29676 2014 2014;29676;44601 0.0 0.0 ENST00000409039.7 UTR5 coding exon(s) DNAH10 5' extension 24139 517327 chr17:39410303-39410383+ NoOverlap chr17 39410303 39410383 + 3.92298516548 27 0.849022151013 2.84347035377 1.07951481171 ENST00000300651.10 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;39410302;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A39410303-39410383%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A39410303-39410383&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.320867531435 0.114943519696 0.431914633577 37566556 37566636 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;37566555;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A39410303-39410383%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A37566556-37566636&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASGGSWCCRPSKRQVAACDEEGSDSSQW*TPR Same 518723 chr17:39410303-39410383+ 24190 24190 -51 3 535 39402672 39410654 809 809;14508;23729;24139;52387 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:39402672-39410654&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641975308642 0.904306220096 -0.45342962963 1.0 -1.36946296296 0.916033333333 0.0210422464777 0.426876574584 32183 6041 6041;10767;32183;36588;67635 -27.5112481481 0.9809 -24.8022555556 -2.70899259259 -0.00017685393465 0.183560745841 35437 4722 4722;27606;32663;35437;64135 0.0 0.0 ENST00000300651.10,ENST00000577831.5,ENST00000394287.7 AntiCDS,AntiNC,AntiCDSintron not annotated putative regulatory region 24190 530789 chr19:31966815-31966868- NoOverlap chr19 31966815 31966868 - 4.97362772624 18 0.908979934386 2.31870002237 2.65492770386 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;31966814;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A31966815-31966868-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A31966815-31966868&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.242079113395 0.11462605474 0.55569615172 32457721 32457774 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;32457720;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A31966815-31966868-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A32457721-32457774&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SFHMIEPPASDALLNSFPPVGCEVWRASRQNFGGLCQFEKNMTFK Same 532252 chr19:31966815-31966868- 24009 24009 181 0 1495 31961652 31966868 2226 2226;24190;29221;31471 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:31961652-31966868&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.321428571429 -1.57996111111 0.9982 -3.3143 1.73433888889 -0.0247079656085 0.43965797082 57262 4902 4902;20668;24363;57262 -3.18603888889 0.913 -6.02753888889 2.8415 0.00756663720864 0.492077317773 31804 8446 8446;24608;25248;31804 0.0 0.0 ENST00000590021.1 NC not annotated potentially spurious 24254 510980 chr16:24609769-24609810+ NoOverlap chr16 24609769 24609810 + 5.57409297143 14 0.626593205376 -0.816178645406 6.39027161683 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;24609768;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A24609769-24609810%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A24609769-24609810&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0617899158478 0.114123658275 0.926049870332 24621090 24621131 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;24621089;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A24609769-24609810%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A24621090-24621131&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YPVGAPPDSYCSWGVEGLEGSAGVVSPSAAPVSPPPTPTATAP Same 512618 chr16:24609769-24609810+ 25509 25509 -1255 0 14580 24609769 24610266 Best 24254 24254;59917 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:24609769-24610266&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.690476190476 0.0 -5.16423571429 0.7762 -2.95248571429 -2.21175 0.014818762408 0.146427113623 34722 24277 24277;34722 -5.57633571429 0.3182 -4.03867857143 -1.53765714286 -0.0274893979174 0.287970113666 54804 11436 11436;54804 0.0 0.0 not annotated potentially spurious 24256 531764 chr19:49019728-49019760- NoOverlap chr19 49019728 49019760 - 6.58003643697 11 0.6728410218 -1.31112735922 7.89116379619 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49019727;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49019728-49019760-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49019728-49019760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0508772228032 0.114108935549 0.990905358525 49522985 49523017 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49522984;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49019728-49019760-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49522985-49523017&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YQSSETRAQYTGSPSGDPR Same 533239 chr19:49019728-49019760- 25738 25738 -1482 0 33 49017965 49020515 34 34;193;1195;1825;2425;7512;24256 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49017965-49020515&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.818181818182 9.73458181818 0.981 -10.4435 20.1780818182 0.575096107022 0.970941695328 2679 18 18;246;307;1538;2029;2679;3404 7.3603 0.4336 -14.9187 22.279 0.355616879751 1.04691461329 4203 76 76;2096;2562;2564;4203;4229;5297 0.0 0.120385592412 chr11:6600669-6600775- protein-coding gene protein-coding gene ENSG00000268655 24312 536006 chr2:175441592-175441768+ NoOverlap chr2 175441592 175441768 + 1.87845764019 59 0.971890036764 -0.45779487819 2.33625251838 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;175441591;177;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441592-175441768%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A175441592-175441768&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.114357315263 0.113614785836 0.736978341503 176306320 176306496 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;176306319;177;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441592-175441768%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A176306320-176306496&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QMETGTDVQLSPITGDLPPLFCRAQLCNLPPSDESRGWHC*IVHLCELDFSDESIRQTR Same 537369 chr2:175441592-175441768+ 22203 22203 2109 18 2593 175431262 175442589 3667 3667;23940;24312;30353;42328;47431;68426;71581;72593 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:175431262-175442589&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.525423728814 0.327777777778 -0.83446440678 0.9998 -3.68333559322 2.84887118644 0.186171156419 0.680745971647 9400 Best 9400 9400;12533;13565;26288;43072;56059;57986;61202;69104 -5.15252542373 0.9101 -8.55556271186 3.40303728814 0.129744063501 0.642358010039 9148 6205 6205;6835;9148;28284;38003;50257;61246;63121;67251 0.0 0.0 ENST00000438963.1 NCintron not annotated potentially spurious 24314 481846 chr10:101331018-101331146- NoOverlap chr10 101331018 101331146 - 2.75500002755 43 0.915254231274 1.32766046514 1.42733956241 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;101331017;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A101331018-101331146-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A101331018-101331146&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.259596042396 0.113605513411 0.576511937966 103090775 103090903 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;103090774;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A101331018-101331146-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A103090775-103090903&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RTRCMIFF*FMGLETDYS*QSSCVERFIRCKM*LYIRQCVGTEL Same 483763 chr10:101331018-101331146- 23668 23668 646 29 5961 101322790 101331146 8363 8363;24314;33173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:101322790-101331146&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.457364341085 0.826923076923 -0.956774418605 1.0 -0.72931627907 -0.227458139535 0.00578339660917 0.37568211501 38701 14302 14302;21427;38701 -4.29531162791 0.7101 -3.1505 -1.14481162791 0.00359043700442 0.428745204408 33590 11247 11247;17236;33590 0.0 0.0 not annotated potentially spurious 24329 485672 chr11:85663213-85663278+ NoOverlap chr11 85663213 85663278 + 4.25000899759 22 0.938200961318 2.01201811162 2.23799088597 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;85663212;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663213-85663278%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A85663213-85663278&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.244758801629 0.113523432468 0.544677025029 85374257 85374322 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;85374256;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663213-85663278%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A85374257-85374322&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVSVYSWNRCHPRPCPHWGQKS Same 487631 chr11:85663213-85663278+ 24729 24729 -400 0 640 85662411 85665175 984 984;2049;2813;3027;18118;20011;21291;24329;58708;71875 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:85662411-85665175&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.530303030303 0.217105263158 0.111436363636 0.9652 -0.952513636364 1.06395 0.0122669473561 0.412220487862 35821 2447 2447;10858;11498;16615;27666;29218;29965;35821;36919;48364 -4.68483636364 0.4017 -5.47066818182 0.785831818182 -0.0259456671833 0.428197140287 53410 5807 5807;12876;35731;45741;53410;58313;62812;66127;69825;72999 0.0 0.0 ENST00000527447.1,ENST00000534224.1,ENST00000260058.9 AntiUTR3,AntiCDSintron,AntiNCintron not annotated putative regulatory region 24334 477235 chr10:38199286-38199408+ NoOverlap chr10 38199286 38199408 + 3.34189026676 41 0.365743123671 0.263219525901 3.07867074085 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;38199285;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38199286-38199408%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A38199286-38199408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0348152052936 0.113481448307 0.786400321152 38488214 38488336 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;38488213;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38199286-38199408%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A38488214-38488336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FFLQWILTLHPFFFQ*EDVLEEYFKYDP*HKLVFSFVCILFKAIRLTAEFAIVSLVR Same 479128 chr10:38199286-38199408+ 24281 24281 53 16 6185 38199286 38210798 8695 8695;24334 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:38199286-38210798&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.308943089431 0.366071428571 13.1854560976 0.9399 8.14562682927 5.03982926829 0.97575676563 0.865660093432 929 490 490;929 28.2621317073 0.582 15.7493707317 12.5127609756 1.08535715317 0.913990717182 103 Best 103 103;658 0.91755371172 chr2:207742223-207742342+ 0.932584760074 chr2:207742223-207742342+ ENST00000423162.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 24418 572446 chr6:108157678-108157842+ NoOverlap chr6 108157678 108157842 + 2.29478727904 55 0.589916560894 -0.0930327198722 2.38781999891 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108157677;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108157678-108157842%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108157678-108157842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0452592779199 0.112943810138 0.740962647645 108478882 108479046 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108478881;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108157678-108157842%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108478882-108479046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGLGAQSMGRPAARAEWS*REPLSRGPN*SALCAARPAAPAAAAPAAHCSASPGR Same 573473 chr6:108157678-108157842+ 25202 25202 -784 29 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.775757575758 0.972733971997 -1.41856 0.9319 -2.81647636364 1.39791636364 0.0363555488903 0.532356083862 26589 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 -5.44604 0.8699 -7.84582909091 2.39978909091 0.0858153527792 0.595290660756 13045 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000441184.1,ENST00000440575.6,ENST00000492070.1 NC,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 24437 584397 chr8:64379211-64379240+ NoOverlap chr8 64379211 64379240 + 8.55101003647 10 0.931447318227 5.56717988849 2.98383014798 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;64379210;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64379211-64379240%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A64379211-64379240&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.212457501284 0.112830636288 0.448255396873 65291768 65291797 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;65291767;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64379211-64379240%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A65291768-65291797&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CHTIKARGECQERSLR Same 585328 chr8:64379211-64379240+ 24035 24035 402 0 10245 64377213 64379240 15435 15435;24437 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:64377213-64379240&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 1.07142857143 2.12332 1.0 0.93352 1.1898 -0.00515142569045 0.324654288906 44232 13959 13959;44232 -6.59799 0.9317 -4.55345 -2.04454 -0.046333578462 0.243659112675 69566 16936 16936;69566 0.0 0.0 ENST00000385081.1,ENST00000519741.1 NC,NCintron not annotated potentially spurious 24438 577643 chr7:27130908-27130943+ NoOverlap chr7 27130908 27130943 + 6.76411667466 12 0.697365275553 1.02346665909 5.74065001557 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27130907;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130908-27130943%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27130908-27130943&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.121591696746 0.11282093325 0.836399514659 27170527 27170562 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27170526;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130908-27130943%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27170527-27170562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VRAAPPQPSARPAPCPTCSAPTNGR Same 578682 chr7:27130908-27130943+ 25115 25115 -677 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.861111111111 1.09090909091 -0.7504 0.7188 -7.338225 6.587825 0.00457362271275 0.789931951036 39239 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -2.14628333333 0.3583 -13.8070916667 11.6608083333 0.0516701808861 0.801633717993 18433 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000317201.6,ENST00000467897.2 NCintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 24447 552965 chr3:101676348-101676410+ NoOverlap chr3 101676348 101676410 + 4.16937127851 21 0.646566175108 0.136395175542 4.03297610297 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;101676347;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A101676348-101676410%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A101676348-101676410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.101237703809 0.112757310761 0.76523305363 101395192 101395254 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;101395191;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A101676348-101676410%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A101395192-101395254&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPGVRPLPAAGPASGEAPLVPPRARARPQLR Same 553917 chr3:101676348-101676410+ 25611 25611 -1164 0 1295 101676348 101677166 1953 1953;24447 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:101676348-101677166&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.825396825397 0.381818181818 1.02478095238 0.7683 -0.4994 1.52418095238 0.00288282821241 0.448099558956 40033 13433 13433;40033 -1.15655714286 0.332 -1.22340952381 0.0668523809524 -0.0148701741085 0.399348114262 44199 40655 40655;44199 0.0 0.0 ENST00000312938.4 AntiCDSintron not annotated putative regulatory region 24462 518091 chr17:48613046-48613084+ NoOverlap chr17 48613046 48613084 + 6.99242302088 13 0.478169621635 0.974384690707 6.01803833017 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48613045;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48613046-48613084%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48613046-48613084&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0578362552689 0.112648385338 0.870727475471 46690408 46690446 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46690407;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48613046-48613084%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46690408-46690446&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGLARRGTLRWEAR Same 519492 chr17:48613046-48613084+ 25163 25163 -701 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.846153846154 1.01739130435 -2.72426153846 0.7267 -6.4839 3.75963846154 -0.01544487129 0.57351101057 50903 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -10.2394153846 0.4994 -14.5872846154 4.34786923077 -0.0348389611086 0.486989673085 61334 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000239144.4,ENST00000498634.2,ENST00000567101.2 AntiUTR3,AntiCDSintron,AntiNCintron not annotated putative regulatory region 24476 611067 chr1:213996442-213996534- Extension chr1 213996442 213996534 - 3.36730638435 31 0.941957634064 1.86379673644 1.5035096479 chr1:213996442-213998124- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;213996441;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213996442-213996534-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A213996442-213996534&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.267133789138 0.112535341747 0.520477950145 214169785 214169877 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214169784;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213996442-213996534-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214169785-214169877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVLSWSGITGRLLCHLQKLVSWAQLKNPGTLANRTKGLMNHFL Same 611784 chr1:213996442-213996534- 24376 24376 100 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52688172043 0.465 2.1424483871 1.0 0.43145483871 1.71099354839 0.19800542576 0.537048554193 8865 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -3.62753548387 0.884 -5.34925806452 1.72172258065 0.0374980588549 0.515556085161 21642 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000261454.8 AntiUTR5 not annotated potentially spurious 24524 479935 chr10:8054572-8054742- NoOverlap chr10 8054572 8054742 - 2.28488946843 57 0.743127483774 0.222900003718 2.06198946472 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8054571;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8054572-8054742-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8054572-8054742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.135168076381 0.112204757606 0.701861422659 8096535 8096705 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8096534;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8054572-8054742-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8096535-8096705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSLCLALPPSLSLLLSLSPSLSIFFFFLQGMHSF*KYQDGARQLSVRRQLWRDAT*GGSSVIRAGGEEPGAGE*GTGSPAQGNCNPNPLQDFSPRPAHPRPSSRPSTDR Same 481843 chr10:8054572-8054742- 24822 24822 -298 36 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.602339181287 0.795348837209 -0.331350877193 0.9003 -1.11686842105 0.78551754386 0.0647680850642 0.495338424035 20474 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -6.49449473684 0.7239 -7.1503754386 0.655880701754 0.0248914725693 0.517514897685 25366 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 ENST00000379328.7,ENST00000481743.1 AntiUTR5,AntiNCintron not annotated putative regulatory region 24529 577646 chr7:27130983-27131030+ NoOverlap chr7 27130983 27131030 + 4.92030008882 16 0.754248683909 0.0595062077045 4.86079388112 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27130982;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130983-27131030%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27130983-27131030&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.119795789449 0.11216234819 0.806718059634 27170602 27170649 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27170601;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130983-27131030%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27170602-27170649&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TARADPDQETRGCVMDAAVRPLGWGR Same 578685 chr7:27130983-27131030+ 24481 24481 48 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.708333333333 1.58241758242 -1.144025 0.9328 -1.46359375 0.31956875 -0.0381556288752 0.309117097695 65510 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -6.242 0.4579 -10.50911875 4.26711875 -0.0167517834275 0.527666076484 45613 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000317201.6,ENST00000467897.2 NCintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 24534 493927 chr12:132119853-132120002+ NoOverlap chr12 132119853 132120002 + 2.91913203554 50 0.235806515602 -1.33095600605 4.25008804159 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132119852;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132119853-132120002%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132119853-132120002&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0264082532836 0.11211519486 0.940445759091 132604398 132604547 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132604397;150;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132119853-132120002%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132604398-132604547&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARPAAPLSIGSMQTSSTPPASHKAASPGAFRLAGVAVAMASRAQSTAPPAPPHPPPGPMAIESP Same 495918 chr12:132119853-132120002+ 22141 22141 2393 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.626666666667 0.217917675545 6.36372 0.4276 -0.256182 6.619902 0.432599264198 1.0032389734 3677 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 9.084056 0.451 -2.801424 11.88548 0.760020821811 0.954000058725 2604 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.869099092564 chr12:131986514-131986807+ 0.761356143557 chr12:131986514-131986807+ ENST00000332441.7 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 24536 482356 chr10:117542643-117542714- NoOverlap chr10 117542643 117542714 - 3.86540838704 24 0.818696752372 1.47275836642 2.39265002062 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117542642;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542643-117542714-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117542643-117542714&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.224982184684 0.112107181003 0.58544485059 119302154 119302225 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119302153;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542643-117542714-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119302154-119302225&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CGDHINSFLRSLVNGLMIGRYYSP Same 484283 chr10:117542643-117542714- 24362 24362 174 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.513888888889 0.842105263158 0.058625 0.957 -1.543475 1.6021 0.0268822472606 0.473300853394 29922 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -3.72365833333 0.8537 -3.68004166667 -0.0436166666667 -0.00640232523486 0.407501328448 38813 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000551288.5,ENST00000442245.5 NCintron,AntiUTR5 not annotated putative regulatory region 24558 573876 chr6:15245105-15245179- NoOverlap chr6 15245105 15245179 - 3.70495196939 25 0.551136949722 -0.237139878869 3.94209184825 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;15245104;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245105-15245179-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A15245105-15245179&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0586065173347 0.111914203383 0.789822919156 15245336 15245410 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;15245335;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245105-15245179-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A15245336-15245410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPPVESRNRARAARSRGGGTRGFPGEGLGAWR Same 574905 chr6:15245105-15245179- 25542 25542 -984 0 1766 15244943 15246114 2604 2604;15135;20464;24558;26329;27078;34912;61691;69748 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:15244943-15246114&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.76 1.16883116883 0.525592 0.6361 -2.892028 3.41762 0.00858321352987 0.646662950754 37413 9551 9551;16260;24695;37413;40709;45352;56150;59595;63982 -3.958204 0.3691 -7.627832 3.669628 0.010687851158 0.568716720433 30484 10022 10022;12289;27835;30484;54557;56016;61735;63783;63901 0.0 0.126830544873 chr14:74921277-74921541- not annotated putative regulatory region 24613 518094 chr17:48614569-48614853+ NoOverlap chr17 48614569 48614853 + 2.53061999271 95 0.396952532395 1.76901575198 0.761604240733 ENST00000239144.4,ENST00000576562.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48614568;285;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48614569-48614853%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48614569-48614853&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.118810377682 0.111422243133 0.529245493593 46691931 46692215 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46691930;285;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48614569-48614853%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46691931-46692215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPGFATGAGSCRRCWDRTPRWVGRPGPGRSRSHNNWGAGTPRFCIWRTVS*RNKSSFY*ILRRRRRRRL*LGAVGEGVGRGKGREREKKTRIRRLLVTLARKGEGK Same 519495 chr17:48614569-48614853+ 20319 20319 4294 55 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.59649122807 0.929203539823 -2.03566526316 0.8291 -2.39256105263 0.356895789474 0.0402077710392 0.387969307471 25518 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -21.3981221053 0.7229 -21.1540284211 -0.244093684211 -0.0623361509639 0.477848854767 73546 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000239144.4,ENST00000567101.2 AntiCDS,AntiNCintron not annotated putative regulatory region 24630 534741 chr2:110347175-110347228+ NoOverlap chr2 110347175 110347228 + 6.15007215738 18 0.601507252274 4.16648346186 1.98358869553 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110347174;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110347175-110347228%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110347175-110347228&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.208623512409 0.111282363607 0.456043314601 111104752 111104805 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111104751;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110347175-110347228%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111104752-111104805&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCPHSAPGGYACPVSSSTYSGLGQR Same 536093 chr2:110347175-110347228+ 24808 24808 -178 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 0.15 11.3509388889 0.7344 5.61556111111 5.73537777778 0.382732658345 0.759855148051 4226 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 29.9234388889 0.6395 8.78615555556 21.1372833333 1.00291201181 0.99338909738 1065 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 24643 549362 chr22:50731633-50731692+ NoOverlap chr22 50731633 50731692 + 3.98259503543 20 0.775893797208 -0.155734982714 4.13833001815 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50731632;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50731633-50731692%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50731633-50731692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.118747270191 0.111218976195 0.769922735892 51170061 51170120 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51170060;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50731633-50731692%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51170061-51170120&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSMRGQDPPW*LGGRGETLGFSMGAK Same 550712 chr22:50731633-50731692+ 24655 24655 -12 10 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.65 0.555555555556 -2.016445 0.9749 -5.0736 3.057155 -0.0154015197173 0.566054131001 50878 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -6.24087 0.4043 -8.871185 2.630315 -0.0236081474158 0.487123541477 51219 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.1144739149 chrX:72142232-72142364+ ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 24647 546386 chr21:8399166-8399918+ NoOverlap chr21 8399166 8399918 + 1.62000832662 251 0.133532186961 1.680627072 -0.0606187453783 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8399165;753;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399166-8399918%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8399166-8399918&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0466932824158 0.111193578665 0.586830196998 159575 160327 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159574;753;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399166-8399918%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159575-160327&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPADATPRRVGGPLR*ALKPRARARVEPPQVQILVVVANIQTRTLKAEVEKGSM*TAVEHGSVGPERWASAVPKGRAMASVALGRSKGSRVQIPESGVAEMGAARRPVR*RDRSRRSRREPRGEFSFLCEGQGALEWVRPERGARALESVAVPAASGELSLALENPGERV*ISRRAVPISAAGLQGEQPLACWNNVGKGSRQAGSVTSG*GLALRAGSVGLGREAGLGARRGWTRRRRPPHARGTPLAALPRPTPR Same 547799 chr21:8399166-8399918+ 8221 8221 16426 190 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.667994687915 1.02032520325 -0.123687250996 0.2298 0.0132505976096 -0.136937848606 0.0107470325954 0.590180280685 36463 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -2.4007063745 0.195 -1.99288486056 -0.407821513944 0.0396592940224 0.453673248377 21115 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.054125795608 chr3:9840184-9840335- ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 24648 546447 chr21:8443401-8444153+ NoOverlap chr21 8443401 8444153 + 1.62000832662 251 0.133532186961 1.680627072 -0.0606187453783 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8443400;753;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443401-8444153%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8443401-8444153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0466932824158 0.111193578665 0.586830196998 159575 160327 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159574;753;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443401-8444153%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159575-160327&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPADATPRRVGGPLR*ALKPRARARVEPPQVQILVVVANIQTRTLKAEVEKGSM*TAVEHGSVGPERWASAVPKGRAMASVALGRSKGSRVQIPESGVAEMGAARRPVR*RDRSRRSRREPRGEFSFLCEGQGALEWVRPERGARALESVAVPAASGELSLALENPGERV*ISRRAVPISAAGLQGEQPLACWNNVGKGSRQAGSVTSG*GLALRAGSVGLGREAGLGARRGWTRRRRPPHARGTPLAALPRPTPR Same 547860 chr21:8443401-8444153+ 8222 8222 16426 190 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.667994687915 1.02032520325 -0.078893625498 0.2156 0.00518247011952 -0.0840760956175 0.0143546402231 0.593237151296 34953 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -1.59096215139 0.2147 -1.21642191235 -0.374540239044 0.0583568819987 0.46050943765 17132 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0279226089468 chr19:18613872-18614016+ not annotated LSU-rRNA_Hsa 24649 516766 chr17:27456733-27456768+ NoOverlap chr17 27456733 27456768 + 6.17629176875 12 0.742871493604 -0.28161662817 6.45790839692 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;27456732;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27456733-27456768%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A27456733-27456768&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0891491618264 0.111192218449 0.908259111498 25783759 25783794 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;25783758;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27456733-27456768%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A25783759-25783794&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGRGQPGAAAVR Same 518155 chr17:27456733-27456768+ 24837 24837 -188 0 384 27456338 27456877 537 537;12116;24649;64231 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:27456338-27456877&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.833333333333 0.833333333333 -7.22209166667 0.8182 -15.1757333333 7.95364166667 0.00952375317608 0.84710160059 37001 1054 1054;13407;16864;37001 -23.7893666667 0.7667 -31.7296083333 7.94024166667 -0.00667106923375 0.421395490535 38952 1306 1306;11778;31000;38952 0.0 0.24617908243 chr12:117968076-117968255- ENST00000580163.5,ENST00000579309.1 UTR5,NC coding exon(s) KSR1 alternative first exons 24685 514860 chr16:72426154-72426234- NoOverlap chr16 72426154 72426234 - 4.12021111449 27 0.825169474044 3.58218519334 0.538025921142 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72426153;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72426154-72426234-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72426154-72426234&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.352907635684 0.1108396884 0.359222130252 72460053 72460133 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72460052;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72426154-72426234-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72460053-72460133&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPASAWNGTVSWRRRRPLSCWV*KHPLCWLHCGRIK Same 516510 chr16:72426154-72426234- 25166 25166 -481 13 5346 72425674 72429311 7419 7419;20359;21636;23849;24685;27931;29808;67419;67757;69819;71722 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425674-72429311&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.58024691358 0.75 -2.74254814815 1.0 -1.64133333333 -1.10121481481 -0.0709706101085 0.245700940714 73105 9185 9185;30001;30975;34321;44342;61179;63064;63782;69032;69981;73105 -8.57845185185 0.6391 -9.60437037037 1.02591851852 -0.0369358360293 0.448568502843 62919 15117 15117;16880;44158;45925;52647;58331;62919;63425;64625;67483;67573 0.0 0.0 ENST00000561611.2,ENST00000624829.3,ENST00000564508.2 NC,NCintron,AntiNC not annotated potentially spurious 24697 549665 chr22:25375820-25375852- NoOverlap chr22 25375820 25375852 - 9.03839087486 11 0.339604791333 -2.7327544337 11.7711453086 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;25375819;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25375820-25375852-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A25375820-25375852&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0287534243119 0.110752802221 1.03258581291 25771787 25771819 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;25771786;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25375820-25375852-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A25771787-25771819&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLERPLLSMDIQVLSQEQQPFCECR Same 551005 chr22:25375820-25375852- 24203 24203 494 0 503 25374157 25381577 747 747;1980;4988;24697 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:25374157-25381577&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575757575758 0.0 14.8294181818 0.7292 -3.79410909091 18.6235272727 0.369751047115 0.996202172862 4401 15 15;22;147;4401 50.8170727273 0.9129 -5.31946363636 56.1365363636 0.990952627801 0.976377660615 1264 656 656;1152;1264;1743 0.996288978736 chr11:68363747-68363943+ 0.97304456492 chr11:68363747-68363943+ ENST00000402859.6 UTR5 pseudogene LRP5L converted to pseudogene (ENSG00000100068) after 3 exons added. This is still a protein-locus in GENCODEv28; it will be updated as a pseudogene in v29 24702 540150 chr2:131379483-131379524- NoOverlap chr2 131379483 131379524 - 5.20042859656 14 0.369690132862 -7.09819277695 12.2986213735 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131379482;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131379483-131379524-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131379483-131379524&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00644989309175 0.110728607175 1.00721458596 132137056 132137097 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;132137055;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131379483-131379524-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A132137056-132137097&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPALLYINTTFFLLCLEGIILSLFIINTLITLFTYLFIYFIIIIL Same 541512 chr2:131379483-131379524- 19648 19648 5054 0 643 131370351 131386316 988 988;1634;5892;16115;21323;24702;26053;30266;32713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131370351-131386316&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.285714285714 0.0 18.5151857143 0.5578 -9.90766428571 28.42285 0.378932161585 0.985920368697 4272 1235 1235;1643;1841;2007;2369;2922;4039;4272;46168 40.18095 0.6245 -16.0789357143 56.2598857143 0.808749343172 0.978216576378 2444 939 939;1359;1734;1945;2052;2301;2444;3194;23136 0.935533079777 chrM:10470-10766+ 0.942466654117 chrM:10470-10766+ pseudogene extension mitochondrial pseudogene region extended (e.g. ENSG00000284003) 24749 540661 chr2:159712300-159712326- NoOverlap chr2 159712300 159712326 - 7.62711114354 9 0.807814314658 -0.353488869137 7.98060001267 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;159712299;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159712300-159712326-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A159712300-159712326&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0691791386044 0.110386869656 0.968265934632 160568811 160568837 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;160568810;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159712300-159712326-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A160568811-160568837&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGALTAGTVEELPPGSQRGATGKRQR Same 542027 chr2:159712300-159712326- 23972 23972 777 0 3512 159712300 159712541 4866 4866;24749;27109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:159712300-159712541&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.740740740741 1.125 0.124455555556 0.8927 -8.48477777778 8.60923333333 -0.0171807981206 0.891408965045 52172 6812 6812;24038;52172 -1.54674444444 0.3091 -8.29743333333 6.75068888889 -0.0192615053404 0.583587611558 47510 13743 13743;35317;47510 0.0 0.0 ENST00000453016.5 NC not annotated putative regulatory region 24810 591613 chr9:27245683-27245742- NoOverlap chr9 27245683 27245742 - 3.93566507027 20 0.651509880217 -0.898460049927 4.83412512019 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;27245682;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A27245683-27245742-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A27245683-27245742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0563510238144 0.110048096238 0.846165974005 27245681 27245740 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;27245680;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A27245683-27245742-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A27245681-27245740&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSVLFGGHNASENAKACMDLVIWKVKEDVKGKK Same 592569 chr9:27245683-27245742- 26150 26150 -1340 0 8600 27245683 27261935 12553 12553;13799;24810 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:27245683-27261935&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.433333333333 0.451127819549 0.158045 0.7346 -9.54508 9.703125 0.168931633262 1.02561300222 10355 7096 7096;10355;41406 23.564345 0.728 -7.516975 31.08132 1.03790099021 1.03684409215 509 Best 509 509;2264;2644 0.0 0.50080812276 chr19:1816066-1816154- ENST00000425633.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 24953 528167 chr19:35775513-35775593+ NoOverlap chr19 35775513 35775593 + 3.99758150401 27 0.687642735434 2.03585552728 1.96172597673 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35775512;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35775513-35775593%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35775513-35775593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.217440087993 0.108962535568 0.551264981708 36266415 36266495 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36266414;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35775513-35775593%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36266415-36266495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APEPRAAVRGGVCSRPRAARALPFVSPWRR Same 529616 chr19:35775513-35775593+ 25995 25995 -1042 0 630 35767600 35790402 970 970;24953;37997;48990;61514;64238;71528 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35767600-35790402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.79012345679 1.0283203125 -3.28004444444 0.8636 -4.42758888889 1.14754444444 -0.0607746633695 0.428037435826 72541 432 432;4773;28957;32900;57014;70882;72541 -9.6672962963 0.4325 -10.0953333333 0.428037037037 -0.0497837143356 0.418703287047 71253 633 633;9309;48569;62013;62367;64507;71253 0.0 0.0294767174888 chr11:124896198-124896318- ENST00000378944.9,ENST00000590893.5,ENST00000589133.5 UTR5,NC,NCintron coding exon(s) PROSER3 retained intron CDS 24974 547214 chr21:8399164-8399919- NoOverlap chr21 8399164 8399919 - 1.44141941494 252 0.133457040404 1.40556465533 0.0358547596113 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8399163;756;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399164-8399919-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8399164-8399919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0566998045677 0.108860677112 0.596455955564 159573 160328 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159572;756;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399164-8399919-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159573-160328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGWGGGGPRGGCPGRGGGGGASSSRGARPAPLRAPARPTQPLEPILIPKLRIRLADFPYLHCSNMPEAVHLGDLLRIWVRPGARFTPSPPDFQGPARAHRTPPEPRRFPRHGPLSRGEPIPGRPALHKEKRTLPGAPAGFSGIGRVTALDASRRPSPPLRIRGSEPDSLSIGRGQRRPSPVPSERRSPISQDRLTHVQLLFTWNPSPLRPSKFSFEYLLLPPRSAPAAAPPGPAP*ASRLTAAALLLVAA*RPRGSGGGER Same 548616 chr21:8399164-8399919- 8136 8136 16838 19 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.669312169312 1.01146788991 -0.0717869047619 0.2297 -0.343675793651 0.271888888889 0.0226604354086 0.610808611972 31522 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -2.13449285714 0.1949 -2.21611428571 0.0816214285714 0.0531190359531 0.467215737306 18101 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0863595036525 chr12:56601180-56601402- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 24975 547310 chr21:8443399-8444154- NoOverlap chr21 8443399 8444154 - 1.44141941494 252 0.133457040404 1.40556465533 0.0358547596113 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8443398;756;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443399-8444154-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8443399-8444154&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0566998045677 0.108860677112 0.596455955564 159573 160328 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159572;756;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443399-8444154-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159573-160328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGWGGGGPRGGCPGRGGGGGASSSRGARPAPLRAPARPTQPLEPILIPKLRIRLADFPYLHCSNMPEAVHLGDLLRIWVRPGARFTPSPPDFQGPARAHRTPPEPRRFPRHGPLSRGEPIPGRPALHKEKRTLPGAPAGFSGIGRVTALDASRRPSPPLRIRGSEPDSLSIGRGQRRPSPVPSERRSPISQDRLTHVQLLFTWNPSPLRPSKFSFEYLLLPPRSAPAAAPPGPAP*ASRLTAAALLLVAA*RPRGSGGGER Same 548713 chr21:8443399-8444154- 8137 8137 16838 19 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.669312169312 1.01146788991 -0.11046031746 0.2153 -0.333386111111 0.222925793651 0.0210768301579 0.607958284769 32172 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -1.57274126984 0.2145 -1.79248849206 0.219747222222 0.0702035687403 0.475004291145 15153 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 24982 487332 chr11:16807153-16807245- NoOverlap chr11 16807153 16807245 - 2.75566121443 31 0.922657432497 -0.335622575975 3.09128379041 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;16807152;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A16807153-16807245-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A16807153-16807245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.114622224109 0.10881030111 0.733019169163 16828700 16828792 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;16828699;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A16807153-16807245-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A16828700-16828792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLTCYVLLYLPFCLEQIKNNEPLINVLYKVLKKSARGCRPR Same 489304 chr11:16807153-16807245- 25142 25142 -160 0 102 16807082 16815297 122 122;22826;24982 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:16807082-16815297&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.440860215054 0.667464114833 -0.760919354839 0.9982 -2.98633870968 2.22541935484 0.0568950591857 0.565045962008 21779 113 113;21779;41496 -2.19722580645 0.7299 -9.54296451613 7.34573870968 0.188799831697 0.759213092958 6548 790 790;6548;32924 0.0 0.0 ENST00000355661.7,ENST00000525581.2,ENST00000525049.5 CDSintron,UTR5intron,NCintron coding exon(s) PLEKHA7 multiple coding exons 24988 562801 chr4:145761968-145762054- NoOverlap chr4 145761968 145762054 - 2.71227930743 29 0.849158254473 -0.841231087158 3.55351039459 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;145761967;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A145761968-145762054-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A145761968-145762054&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0740736165112 0.108761525823 0.776356998543 146683120 146683206 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;146683119;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A145761968-145762054-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A146683120-146683206&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLLAFLRVLGVVHEKSILCVAPI*RGGQEV*TSALSGR Same 563797 chr4:145761968-145762054- 24731 24731 257 10 216 145760752 145763106 266 266;24988;47053;73636 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:145760752-145763106&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.528735632184 0.54375 1.13151034483 0.9776 -3.93254482759 5.06405517241 0.242475845898 0.816860440484 7199 268 268;7199;31923;70489 -8.16562413793 0.5488 -17.7183655172 9.55274137931 0.106653174286 0.808944525074 10893 626 626;10893;21541;65202 0.0 0.103164426703 chr7:149474384-149475483- ENST00000503462.1,ENST00000379448.8,ENST00000510096.1 CDSintron,UTR3intron,AntiNCintron pseudo-exon ZNF827 has pseudo repeats downstream of the STOP codon. 25015 541855 chr2:216606912-216606938- NoOverlap chr2 216606912 216606938 - 8.64956669013 9 0.775906004425 2.17789999644 6.47166669369 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;216606911;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A216606912-216606938-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A216606912-216606938&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.128770670055 0.108556115038 0.83607193686 217471635 217471661 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;217471634;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A216606912-216606938-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A217471635-217471661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRRGRVRRATGR Same 543229 chr2:216606912-216606938- 24537 24537 478 0 14913 216606912 216606938 Best 25015 25015 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:216606912-216606938&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.5 9.10227777778 0.9654 -2.48611111111 11.5883888889 0.363433848662 0.995685574361 4480 Best 4480 4480 7.34605555556 0.3754 -6.56326666667 13.9093222222 0.138132385082 0.843121970888 8632 Best 8632 8632 0.0 0.0 ENST00000449783.1,ENST00000441803.1 NC,AntiNCintron not annotated potentially spurious 25045 514146 chr16:50386980-50387009- NoOverlap chr16 50386980 50387009 - 7.65574002266 10 0.879411001755 2.06920986772 5.58653015494 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;50386979;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A50386980-50387009-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A50386980-50387009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.148467496186 0.108387013993 0.781996320394 50420891 50420920 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;50420890;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A50386980-50387009-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A50420891-50420920&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGTSGLAQLPEATDMK Same 515798 chr16:50386980-50387009- 23313 23313 1732 0 6446 50386980 50391447 9104 9104;25045;26626;71071 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:50386980-50391447&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 0.230769230769 5.18924 0.9832 -3.73274 8.92198 0.209473381065 0.913975684135 8394 2539 2539;8394;15399;20670 -1.80075 0.4839 -9.85827 8.05752 0.00962071232394 0.645598148518 30914 4491 4491;17207;30914;55618 0.0 0.0 not annotated potentially spurious 25104 548690 chr22:38506493-38506525+ NoOverlap chr22 38506493 38506525 + 7.46525466442 11 0.86500343328 3.46756374836 3.99769091606 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;38506492;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A38506493-38506525%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A38506493-38506525&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.194133084038 0.107947588435 0.613379272152 38902498 38902530 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;38902497;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A38506493-38506525%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A38902498-38902530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SERRVLAPPELER Same 550060 chr22:38506493-38506525+ 23666 23666 1438 0 613 38506019 38506525 940 940;2348;12200;25104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:38506019-38506525&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575757575758 1.875 7.55620909091 0.9124 0.342845454545 7.21336363636 0.216197385846 0.81182699501 8138 5045 5045;8138;18258;30760 5.62501818182 0.4102 0.310709090909 5.31430909091 0.0632047356784 0.536412101487 16286 5447 5447;9812;16286;35577 0.0 0.0 ENST00000432525.5 AntiNCintron not annotated putative regulatory region 25172 582313 chr7:115673834-115673911- NoOverlap chr7 115673834 115673911 - 3.29784230086 26 0.901792935073 0.266046109108 3.03179619175 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;115673833;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115673834-115673911-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A115673834-115673911&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.156384769045 0.107412483901 0.688458798693 115313888 115313965 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;115313887;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115673834-115673911-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A115313888-115313965&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GILR*QSTTHFTYTKGIFFPFYNHPQWLK Same 583274 chr7:115673834-115673911- 25064 25064 108 2 5672 115673834 115679526 7911 7911;18821;19702;21896;25172;45048;57068 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:115673834-115679526&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.435897435897 0.590909090909 -0.955042307692 1.0 -2.46943076923 1.51438846154 0.0127084595594 0.472165286443 35655 9148 9148;20280;33321;35228;35655;36146;49962 -4.10374615385 0.9277 -6.37568076923 2.27193461538 0.0227313107229 0.51401596783 26080 6859 6859;16053;21757;25065;26080;28039;62910 0.0 0.0 ENST00000471672.1 NCintron not annotated potentially spurious 25197 577712 chr7:27170414-27170473+ NoOverlap chr7 27170414 27170473 + 3.76540011764 20 0.97520561532 -1.0500798285 4.81547994614 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27170413;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27170414-27170473%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27170414-27170473&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0575445216849 0.10723273594 0.845199031512 27210033 27210092 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27210032;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27170414-27170473%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27210033-27210092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNKSRQTLRHQGYRAQTNYDR Same 578751 chr7:27170414-27170473+ 29212 29212 -4015 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.516666666667 1.02564102564 -2.05451 0.9997 -4.848475 2.793965 -0.0146608403248 0.543032071414 50368 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -9.59403 0.7767 -13.47493 3.8809 -0.0307057210494 0.520315842551 57753 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000519694.1,ENST00000487384.5,ENST00000470747.4,ENST00000465941.1 NCintron,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 25269 577725 chr7:27184649-27184729+ NoOverlap chr7 27184649 27184729 + 2.98586284231 27 0.799349513548 -0.491292556127 3.47715539844 ENST00000006015.3,ENST00000517402.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27184648;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184649-27184729%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27184649-27184729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0935576478845 0.106648847333 0.7526063526 27224268 27224348 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27224267;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184649-27184729%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27224268-27224348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPWPPGAPSRRSCPRGSRRRRGFPGCRRLSRKTGRKPVAGR Same 578764 chr7:27184649-27184729+ 25470 25470 -201 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 1.19901315789 -3.64642962963 0.9251 -12.4234592593 8.77702962963 0.126217119755 0.993456895506 13423 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -29.4687777778 0.8791 -41.5594074074 12.0906296296 -0.0169698153352 0.507373933452 45784 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000520360.5,ENST00000006015.3 NC,AntiCDS not annotated putative regulatory region 25275 485329 chr11:69157426-69157476+ NoOverlap chr11 69157426 69157476 + 5.27287054982 17 0.536869836055 0.375211806858 4.89765874296 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;69157425;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A69157426-69157476%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A69157426-69157476&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0691508766223 0.106591764091 0.817324493716 68924894 68924944 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;68924893;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A69157426-69157476%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A68924894-68924944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LRQRWRAGGAGTARGAGSR Same 487285 chr11:69157426-69157476+ 25957 25957 -682 0 181 69157426 69157993 219 219;25275 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:69157426-69157993&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.823529411765 0.910714285714 1.19144705882 0.5752 0.490194117647 0.701252941176 -0.0267687423792 0.34595259808 58540 156 156;58540 -4.23890588235 0.4746 -7.76448823529 3.52558235294 -0.00446197526899 0.511083719284 37704 182 182;37704 0.0 0.0 ENST00000565145.1,ENST00000562772.1 NCintron,AntiNCintron protein-coding gene protein-coding gene ENSG00000284713 25303 493944 chr12:132509173-132509274+ NoOverlap chr12 132509173 132509274 + 3.309502961 34 0.668804276116 1.18895889558 2.12054406543 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132509172;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509173-132509274%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132509173-132509274&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.169254637882 0.106376806222 0.624398332841 133085759 133085860 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;133085758;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132509173-132509274%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A133085759-133085860&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CAPQKGGRSQPATGTRTARPSASNSSSPASPASPRGPSQPR Same 495935 chr12:132509173-132509274+ 27015 27015 -1712 0 98 132509173 132510440 116 116;202;637;794;2162;3860;16489;25303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132509173-132510440&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.745098039216 0.29247311828 1.99213235294 0.8643 -2.51673823529 4.50887058824 0.234383654971 0.805812583821 7480 6 6;93;263;1110;1440;2944;5926;7480 -5.29613235294 0.5121 -13.1614441176 7.86531176471 0.140073528176 0.781886131759 8523 2003 2003;2026;2435;2663;4003;7601;8523;55779 0.0 0.109720628154 chr7:100790942-100791113+ ENST00000542061.2,ENST00000434748.2 NC,CDSintron coding exon(s) FBRSL1 alternative final coding exon 25308 481963 chr10:102418734-102418811- NoOverlap chr10 102418734 102418811 - 4.17648075979 26 0.799057461955 3.41435769888 0.762123060914 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102418733;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102418734-102418811-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102418734-102418811&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.325930942153 0.106362206503 0.380825321683 104178491 104178568 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104178490;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102418734-102418811-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104178491-104178568&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") D*EAGGPGANGSRAAFTAQLGPASPLSLLGLSSGR Same 483880 chr10:102418734-102418811- 25842 25842 -534 2 470 102395633 102432561 680 680;6932;11855;22696;25308;48284;57642;69925;70124;70146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102395633-102432561&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.705128205128 0.515873015873 0.465215384615 0.9807 1.21879615385 -0.753580769231 0.00789902302612 0.281266968116 37715 2246 2246;9900;30034;37715;42789;48132;52915;53220;64824;73530 -3.35913461538 0.4194 -3.65937307692 0.300238461538 -0.0132278148374 0.432789150023 43017 715 715;21243;24877;42637;43017;45832;46589;56731;57300;70842 0.0 0.0 ENST00000020673.5,ENST00000472685.5 UTR5,NC coding exon(s) PSD alternative first exon 25319 589080 chr9:66182647-66182721+ NoOverlap chr9 66182647 66182721 + 5.39148393154 25 0.317799649042 2.01858003885 3.3729038927 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;66182646;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66182647-66182721%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A66182647-66182721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0305234072695 0.106300545419 0.713766527066 42338617 42338543 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;42338616;-73;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66182647-66182721%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A42338617-42338543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAFYMCSGENDAILEWPVENRQVIITIFDQDLMSGTGCP Different 590026 chr9:66182461-66182724+ 2054 2054 23265 0 3697 66182325 66188394 5129 5129;10383;13781;19517;25319;25601 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:66182325-66188394&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.493333333333 0.465838509317 18.132108 0.8783 2.892888 15.23922 0.937759344768 1.03460060662 1155 27 27;119;165;833;1155;1409 41.617736 0.8533 11.237948 30.379788 1.00187478412 1.04744372594 1082 170 170;536;804;927;1082;1686 0.998596154249 chr6:46833074-46833538+ 0.999510619355 chr6:46833074-46833538+ pseudogene MEP1A pseudogene (ENSG00000284706); found after looking at high-scoring intergenic PCCRs 25343 475581 chr1:205457057-205457206- NoOverlap chr1 205457057 205457206 - 2.69428606272 50 0.497897611963 0.399196027741 2.29509003498 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;205457056;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205457057-205457206-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A205457057-205457206&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0571562505959 0.106050558528 0.719416195041 205426185 205426334 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;205426184;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205457057-205457206-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A205426185-205426334&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EQIIYSLIPVRVPGAGEWRG*EGWVSSSSVPSPAPAGSRPHTHTFPDN*RTHLGRAASGGGAAAFVSRPPGCEVR Same 477467 chr1:205457057-205457206- 25804 25804 -461 22 426 205429956 205457273 602 602;5870;20670;25343;28258;42315;54500 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:205429956-205457273&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.706666666667 0.811395600433 -3.022548 0.6761 -5.299846 2.277298 -0.029461125464 0.579383135161 60191 1075 1075;10557;16883;23930;42062;54053;60191 -5.09137 0.3133 -9.123704 4.032334 0.015286309587 0.662037489607 28634 283 283;9691;10748;23486;28634;42041;49407 0.0 0.103275297277 chr13:38687345-38692517+ ENST00000629113.1,ENST00000442318.1 NC,AntiNC under investigation; now made coding Finds a 33aa single exon CDS within a 5' exon of LEMD1 in GENCODE [chr1:205441026-205440925], although this exon is part of lncRNA BLACAT1 in RefSeq. Transcriptomics data make it clear that the locus should indeed be considered an independent gene from LEMD1, with an indication of potential brain / neuronal specificity (e.g. SRR486241). The CDS was initially considered hard to appraise because of its small size, although the reading frame is conserved across vertebrates with only 3mer indels in the genomic alignments. Following the analytical work presented here, it was decided to convert this gene (i.e. BLACAT1) to protein-coding, and ENSG00000281406 appeared in GENCODEv31. 25346 557411 chr3:164021385-164021459- NoOverlap chr3 164021385 164021459 - 4.17649998665 25 0.26302464332 -2.28820002437 6.46470001101 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;164021384;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164021385-164021459-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A164021385-164021459&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00288826169672 0.10602214346 1.00659989414 163739173 163739247 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;163739172;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164021385-164021459-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A163739173-163739247&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHTCQGHQTGSDKISRGNKKANEAAKQASLSSIPAPILLATPAV Same 558380 chr3:164021385-164021459- 24459 24459 887 0 515 164020256 164021752 771 771;1003;8769;19116;25346;28404;49038 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:164020256-164021752&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.413333333333 0.0 -1.040728 0.0223 -1.91308 0.872352 0.0307077739649 0.408953284941 28407 19419 19419;24940;25790;26229;28407;40126;56143 -1.040728 0.007 -1.91308 0.872352 -0.0294761855545 0.455806125124 56644 13932 13932;30001;32108;33417;45789;56644;69776 0.0 0.0 not annotated fragments of a reteroviral ORF 25404 546736 chr21:35072890-35072925+ NoOverlap chr21 35072890 35072925 + 6.72862492005 12 0.828595407034 2.3388999477 4.38972497235 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;35072889;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A35072890-35072925%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A35072890-35072925&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.177071992847 0.105578939245 0.687275408143 36445187 36445222 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;36445186;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A35072890-35072925%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A36445187-36445222&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LYVYEMFSFIWRQGNQNQLK Same 548152 chr21:35072890-35072925+ 24098 24098 1306 0 1025 35072749 35072925 1565 1565;25404 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:35072749-35072925&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 1.02857142857 1.92670833333 1.0 0.798008333333 1.1287 0.011067320155 0.338615169116 36340 8955 8955;36340 1.37380833333 0.5812 0.755991666667 0.617816666667 -0.000282292457139 0.359274662836 35503 11411 11411;35503 0.0 0.0 ENST00000475045.6 AntiUTR5intron not annotated putative regulatory region 25430 500743 chr14:22479534-22479563+ NoOverlap chr14 22479534 22479563 + 6.92062005997 10 0.952193484398 0.145879921317 6.77474013865 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22479533;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22479534-22479563%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22479534-22479563&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0739158077657 0.10539555362 0.905317785321 22948523 22948552 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22948522;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22479534-22479563%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22948523-22948552&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILVSLCYTGANSKLTFGKGITLSVRPGMF None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.3 0.0 6.73875 0.9662 0.10846 6.63029 0.202468724845 0.762223731339 8664 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 10.51383 0.4062 2.57431 7.93952 0.149589574038 0.619213279115 8050 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390483.1,ENST00000611204.4,ENST00000514473.2 NC,NCintron,AntiNCintron immunoglobulin segment overlaps an immunoglobulin region 25501 525528 chr18:26549763-26549801- NoOverlap chr18 26549763 26549801 - 5.34894619538 13 0.807501569919 -0.907907683116 6.2568538785 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26549762;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26549763-26549801-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26549763-26549801&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0659492938192 0.104880618754 0.908634879425 24129727 24129765 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;24129726;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26549763-26549801-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A24129727-24129765&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARPGELFGCFSSFRGARPRAPEAAQPGGR Same 526971 chr18:26549763-26549801- 24735 24735 766 0 513 26546760 26549891 768 768;8399;25501;30998;36827;39211;40894;58515;70807;71876 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26546760-26549891&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.846153846154 0.87969924812 1.60436923077 0.9445 -8.061 9.66536923077 0.1418475254 0.978513702481 12141 2222 2222;11084;12141;14614;15029;28171;62885;67707;71661;73517 -3.69795384615 0.4022 -10.6007230769 6.90276923077 0.00445654760989 0.621371714266 33196 2942 2942;16429;16512;26392;33196;52681;55735;64991;73449;73633 0.0 0.167954626319 chr17:42673176-42673296- ENST00000417602.5,ENST00000580191.5,ENST00000317932.11 UTR5,CDSintron,UTR5intron coding exon(s) KCTD1 5' extension 25531 588649 chr9:23826090-23826149+ NoOverlap chr9 23826090 23826149 + 3.8762150526 20 0.912221713588 -0.331260019541 4.20747507215 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23826089;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23826090-23826149%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23826090-23826149&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.110058235008 0.104632543951 0.778558194165 23826088 23826147 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23826087;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23826090-23826149%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23826088-23826147&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GKKNKPRNKEKRRKNVFSKRR Same 589595 chr9:23826090-23826149+ 25936 25936 -405 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.316666666667 2.04545454545 -0.09914 0.9958 -3.65384 3.5547 0.0607703337528 0.61833653175 21118 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -9.442925 0.6304 -17.26811 7.825185 0.0126049427695 0.679515391637 29698 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000380117.5,ENST00000462649.1 AntiUTR5,AntiNC not annotated putative regulatory region 25549 572063 chr6:84707256-84707297+ NoOverlap chr6 84707256 84707297 + 6.01273575851 14 0.859494926375 2.68135712828 3.33137863023 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;84707255;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A84707256-84707297%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A84707256-84707297&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.210956222522 0.104481244394 0.588696294366 85416974 85417015 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;85416973;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A84707256-84707297%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A85416974-85417015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KHTDFKEMSCGICNIYR Same 573088 chr6:84707256-84707297+ 24464 24464 1085 0 15162 84707256 84707297 Best 25549 25549 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:84707256-84707297&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.380952380952 0.0 4.55051428571 0.9871 -0.145035714286 4.69555 0.194244242339 0.66181403118 9030 Best 9030 9030 0.7263 0.5347 -4.55166428571 5.27796428571 0.0602073141584 0.567872464848 16787 Best 16787 16787 0.0 0.0 ENST00000591225.5,ENST00000423086.2,ENST00000606784.5 NC,NCintron,AntiCDSintron not annotated potentially spurious 25599 540175 chr2:132670257-132670304- NoOverlap chr2 132670257 132670304 - 5.06966877962 16 0.679827573053 0.18655001279 4.88311876683 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;132670256;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A132670257-132670304-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A132670257-132670304&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0999466851688 0.104122388911 0.807842376468 133427830 133427877 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;133427829;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A132670257-132670304-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A133427830-133427877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SDRPSLPRPPPPPQLGSRHVMPGVGGGEK Same 541537 chr2:132670257-132670304- 26444 26444 -845 0 268 132668677 132673137 349 349;4819;25599;29906;42467 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:132668677-132673137&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6875 0.553846153846 1.81309375 0.9015 -3.120525 4.93361875 0.0758413064085 0.704964402106 18835 117 117;11448;18835;33618;70710 -0.73553125 0.4184 -4.15846875 3.4229375 0.017043504381 0.505423988087 28002 183 183;28002;37490;38224;49163 0.0 0.117047438403 chr19:1487218-1487313- ENST00000345008.6 UTR5intron coding exon(s) NCKAP5 alternative final exon 25601 589083 chr9:66188329-66188394+ NoOverlap chr9 66188329 66188394 + 4.42724545977 22 0.317799649042 -1.73972720687 6.16697266664 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;66188328;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66188329-66188394%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A66188329-66188394&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000332751097353 0.104110605414 0.972099514121 42332932 42332867 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;42332931;-64;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A66188329-66188394%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A42332932-42332867&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WERCQAMQLHGSVLGMVIGGTAGVIFLTFSIIAILSQRPR Same 590029 chr9:66188329-66188394+ 24576 24576 1025 0 3697 66182325 66188394 5129 5129;10383;13781;19517;25319;25601 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:66182325-66188394&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.651515151515 0.611111111111 16.5494772727 0.8683 -7.10025454545 23.6497318182 0.864378556752 0.969428280235 1409 27 27;119;165;833;1155;1409 26.6274954545 0.6402 -10.9636 37.5910954545 1.03621511457 0.978043962968 536 170 170;536;804;927;1082;1686 0.998672181357 chr6:46838980-46839136+ 0.965625716843 chr6:46838980-46839136+ pseudogene MEP1A pseudogene (ENSG00000284706); found after looking at high-scoring intergenic PCCRs 25613 482306 chr10:116836328-116836390- NoOverlap chr10 116836328 116836390 - 3.56143343449 21 0.967796197597 -1.12062855845 4.68206199294 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;116836327;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A116836328-116836390-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A116836328-116836390&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0509519525613 0.103991281298 0.840469220768 118595839 118595901 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;118595838;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A116836328-116836390-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A118595839-118595901&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHGGTQCHWPFKTMTMLPPPLPPPPL Same 484231 chr10:116836328-116836390- 29133 29133 -3520 0 599 116834939 116836390 922 922;13718;25613;56479 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:116834939-116836390&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.539682539683 0.249011857708 0.141752380952 0.9548 0.565204761905 -0.423452380952 -0.0155790655636 0.280107897958 51004 437 437;6718;9282;51004 -7.85534761905 0.5783 -8.37469047619 0.519342857143 -0.0397136932059 0.400743768861 65009 3518 3518;11846;63529;65009 0.0 0.0 ENST00000434227.1 NCintron coding exon(s) HSPA12A alternative first exon 25620 467305 chr1:153922869-153922955+ NoOverlap chr1 153922869 153922955 + 3.14117925845 29 0.734832400691 0.302431012022 2.83874824643 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;153922868;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922869-153922955%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A153922869-153922955&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.128135136237 0.103945237797 0.686432895434 153895345 153895431 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;153895344;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922869-153922955%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A153895345-153895431&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAGRTGAGGRSRHCGTDGGSGGGDGCTGGGGTTQTR Same 469172 chr1:153922869-153922955+ 26838 26838 -1218 0 442 153922296 153923335 631 631;25620;45644;48477;49099;61066;66023;69687 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:153922296-153923335&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.83908045977 1.12077294686 0.397772413793 0.6947 -0.587096551724 0.984868965517 -0.0171906789666 0.449006664494 52177 8425 8425;19724;29638;38385;45793;48574;52177;55960 -4.49983448276 0.3088 -7.07352413793 2.57368965517 -0.0165282146047 0.540491094288 45459 6002 6002;12984;19687;42340;44124;45459;47982;71255 0.0 0.0 ENST00000368655.4 AntiUTR5 not annotated putative regulatory region 25631 595945 chrX:153483299-153483340+ NoOverlap chrX 153483299 153483340 + 2.83394998312 14 0.660239348658 -6.26322856712 9.09717855024 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;153483298;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153483299-153483340%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A153483299-153483340&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.163206279472 0.103825471619 1.04633367771 152748757 152748798 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;152748756;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A153483299-153483340%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A152748757-152748798&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PRP*ELHLGTNLIEEVAEGALSHIHSLSVLVLSHNWLQEHWLAPR Same 596586 chrX:153483299-153483340+ 25752 25752 -121 2 1397 153481540 153486067 2093 2093;2101;2242;2901;9240;10410;14641;25631 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:153481540-153486067&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.642857142857 0.230769230769 -0.817814285714 0.8774 -11.47335 10.6555357143 0.102061787587 1.01820701288 15622 1899 1899;2169;2617;3156;4527;4610;7126;15622 9.53737142857 0.7546 -16.8842285714 26.4216 0.69870240963 1.06757025144 2812 550 550;891;987;1399;1497;1593;2015;2812 0.0 0.161139008413 chr9:92502513-92502652- ENST00000370210.3 AntiUTR5intron pseudogene unitary pseudogene ENSG00000224963 25634 546963 chr21:46324103-46324132+ NoOverlap chr21 46324103 46324132 + 8.34661009312 10 0.735097276265 3.66384004354 4.68277004957 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;46324102;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A46324103-46324132%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A46324103-46324132&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.155253695082 0.103818129354 0.665834907354 47744017 47744046 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;47744016;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A46324103-46324132%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A47744017-47744046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSGAGPRLRDSCRGGR Same 548380 chr21:46324103-46324132+ 25465 25465 169 0 336 46324103 46326488 460 460;25634 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:46324103-46326488&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 1.25 2.74835 0.7934 -2.25927 5.00762 -0.00185852226984 0.647550704247 42448 460 460;42448 -4.31112 0.3488 -8.53688 4.22576 -0.0268407162755 0.485343751877 54217 558 558;54217 0.0 0.0 ENST00000359568.9 UTR5 under investigation Identifies a prospective 68aa single exon CDS at chr21:46,326,288-46,326,491, which overlaps with a coding exon of PCNT in a different frame. Conservation of the 68aa CDS is apparent across vertebrates, as is conservation of the PCNT exonic translation. There is currently no evidence to support the transcription of the 68aa CDS in human or mouse. The candidate ORF includes the variant RCV000147149, which is linked in ClinVar to Microcephalic osteodysplastic primordial dwarfism type II, a condition that develops in-utero. If the transcript is only be expressed in utero, that might explain the lack of support from existing transcription databases. 25676 546229 chr21:8209806-8210150+ NoOverlap chr21 8209806 8210150 + 1.94302608941 115 0.558710148245 1.32876785155 0.614258237855 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8209805;345;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8209806-8210150%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8209806-8210150&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.186515411567 0.103496748747 0.511457946453 109253 109597 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;109252;345;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8209806-8210150%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A109253-109597&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ANTCRRALTPFAGGMRAFIRSKPTRSAPLRPRPGGGRRRLW*L*ITSGRSHAPRGGDDPFERLPYQLSMVVAVPTMVTTGDGESGFDSGEGA*ETATTSKEGSRRANYPLPTRGGSDEK Same 547643 chr21:8209806-8210150+ 9681 9681 15995 66 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.649275362319 1.01761798469 -1.27087130435 0.2504 -1.06780695652 -0.203064347826 -0.0270099405412 0.394230781775 58705 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -1.8042573913 0.178 -1.41168608696 -0.392571304348 -0.0121523584161 0.504214169274 42279 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 25692 570017 chr5:176147727-176147867- NoOverlap chr5 176147727 176147867 - 3.13425535962 47 0.279697871366 -0.244589363324 3.37884472295 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;176147726;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176147727-176147867-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A176147727-176147867&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0270993504842 0.103373420532 0.844465180875 175574730 175574870 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;175574729;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176147727-176147867-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A175574730-175574870&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DFVNTVHVLIAIGFTDTESSLSEQSTVAWQDRTFSEEPG*APVRAAPCTDVVPWLAGCSVINQVTPACYEGQVGEDGLSIK Same 571035 chr5:176147727-176147867- 24586 24586 1106 15 6143 176146963 176156969 8635 8635;13435;25692;32992;35007;45549;51680 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:176146963-176156969&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.602836879433 0.391666666667 13.074487234 0.7154 2.95149361702 10.122993617 1.05872952744 1.05029483601 170 17 17;170;306;1893;3127;16509;16641 14.8558212766 0.5125 -0.941929787234 15.7977510638 1.0188956576 1.01642184546 800 11 11;134;388;800;3031;3612;16194 0.966644255892 chr18:13068094-13068237+ 0.98527617846 chr18:13068094-13068237+ ENST00000513919.1,ENST00000510029.1 NC,AntiNCintron pseudogene centrosomal protein 192kDa (CEP192) pseudogene (ENSG00000283559) 25779 512857 chr16:88884148-88884180+ NoOverlap chr16 88884148 88884180 + 7.88053628531 11 0.799952835751 5.18231806972 2.6982182156 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;88884147;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A88884148-88884180%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A88884148-88884180&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.209532938276 0.102707826431 0.439125204918 88950556 88950588 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;88950555;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A88884148-88884180%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A88950556-88950588&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLAFISVLAESGGSQHLPDPAAACQTPSPAAWALEPSAR Same 514504 chr16:88884148-88884180+ 24797 24797 982 0 15260 88884148 88887214 Best 25779 25779;31089 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:88884148-88887214&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 0.52380952381 3.05760909091 0.8725 4.04093636364 -0.983327272727 -0.0203812324346 0.165061353158 54425 37903 37903;54425 -0.361472727273 0.4154 0.299236363636 -0.660709090909 -0.0274318195158 0.303360943357 54757 19181 19181;54757 0.0 0.0644793212055 chr3:49717951-49719465- ENST00000565053.1,ENST00000268679.8 NC,AntiCDSintron not annotated potentially spurious 25810 571751 chr6:50093702-50093758+ NoOverlap chr6 50093702 50093758 + 3.92477889751 19 0.973093525758 -0.98084215114 4.90562104865 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;50093701;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A50093702-50093758%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A50093702-50093758&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0566811883205 0.102535821572 0.845338401975 50061415 50061471 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;50061414;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A50093702-50093758%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A50061415-50061471&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NMMERW*EAN*MDGWLTDSSLVLR Same 572778 chr6:50093702-50093758+ 29704 29704 -3894 11 15272 50093305 50093758 Best 25810 25810;47856;68461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:50093305-50093758&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.438596491228 0.0 -1.49407368421 0.9926 -1.29137894737 -0.202694736842 -0.040016900701 0.285224966302 66555 11547 11547;40188;66555 -8.61938947368 0.8702 -7.32754210526 -1.29184736842 -0.0470697412797 0.317336076728 70015 18779 18779;64706;70015 0.0 0.0 ENST00000415106.1 NC not annotated putative regulatory region 25900 475812 chr1:213987602-213987679- NoOverlap chr1 213987602 213987679 - 4.16024225377 26 0.473476885516 0.854353913894 3.30588833988 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;213987601;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213987602-213987679-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A213987602-213987679&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0629937477736 0.101879805255 0.719241108294 214160945 214161022 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214160944;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213987602-213987679-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214160945-214161022&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DDWIAAPGPERAICGHYAKRETARAAPGSH Same 477702 chr1:213987602-213987679- 26271 26271 -371 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.74358974359 1.21146953405 2.86747307692 0.7391 1.07871153846 1.78876153846 0.0658072680866 0.512867168478 20329 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -1.45675384615 0.4103 -4.63767692308 3.18092307692 0.0497785593614 0.559326484317 18788 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000625209.2,ENST00000433082.6,ENST00000471129.1 NC,NCintron,AntiUTR5intron not annotated potentially spurious 26018 549775 chr22:29080202-29080234- NoOverlap chr22 29080202 29080234 - 6.69482722066 11 0.929564354925 0.94989999316 5.7449272275 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;29080201;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A29080202-29080234-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A29080202-29080234&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.117625156219 0.100840829404 0.826383016811 29476190 29476222 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;29476189;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A29080202-29080234-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A29476190-29476222&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NTLMKEQNMEGGKD Same 551116 chr22:29080202-29080234- 25475 25475 543 0 1230 29080202 29080576 1857 1857;26018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:29080202-29080576&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.454545454545 0.0 0.239818181818 0.9988 -2.95560909091 3.19542727273 -0.0152494860148 0.508776162909 50758 20519 20519;50758 -8.91635454545 0.5032 -11.5339727273 2.61761818182 -0.037834505074 0.413429394406 63595 40784 40784;63595 0.0 0.0 ENST00000327813.9 AntiCDSintron not annotated putative regulatory region 26019 552907 chr3:88467191-88467220+ NoOverlap chr3 88467191 88467220 + 9.00530004501 10 0.685069047074 6.02325014174 2.98204990327 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;88467190;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88467191-88467220%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A88467191-88467220&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.172993314569 0.100835998802 0.439092523887 88516341 88516370 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;88516340;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A88467191-88467220%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A88516341-88516370&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NNSQPQSLLPSTSSSTSSSSTTSSSSSVASASSDSSSSSSSSSSFSISSSSSPSK Same 553849 chr3:88467191-88467220+ 26247 26247 -228 0 416 88466612 88467418 585 585;2207;4312;26019 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:88466612-88467418&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.0 22.4748 0.9569 24.94505 -2.47025 0.280378021855 0.0135403411109 6077 907 907;1471;2699;6077 21.48899 0.3236 23.70978 -2.22079 0.0900132494822 0.193073574219 12555 2570 2570;3552;4407;12555 0.0 0.0 protein-coding gene protein-coding gene ENSG00000283434 26026 547965 chr22:18985824-18986033+ NoOverlap chr22 18985824 18986033 + 3.22329573206 70 0.126312439373 0.0864085499729 3.13688718208 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;18985823;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A18985824-18986033%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A18985824-18986033&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0912114471581 0.100769511421 0.852128562238 18973337 18973546 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;18973336;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A18985824-18986033%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A18973337-18973546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLSDQNIIHSGSALLAPATRAAWEQIQRSEGGTAQLLRRLEGYFSNVARNVQWTYLQPFVIVTTNMSKALAALGVEACNPQGCAQELGPHGWSR Same 549385 chr22:18985824-18986033+ 21754 21754 4272 0 6645 18985824 18997940 9432 9432;26026;32176;36938;37917 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:18985824-18997940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.638095238095 0.609375 0.745955714286 0.0247 0.0651842857143 0.680771428571 0.0158177888573 0.50032201019 34296 27214 27214;29320;33193;33239;34296 21.9820185714 0.5961 -2.76966571429 24.7516842857 0.963667990256 1.04048633538 1654 175 175;616;1654;2214;58981 0.0 0.704514071162 chr22:46386402-46386585- ENST00000399539.3,ENST00000438934.5 NC,NCintron pseudogene DiGeorge syndrome critical region gene 5 (non-protein coding) unprocessed pseudogene (ENSG00000237517) 26034 518060 chr17:48593872-48593979+ NoOverlap chr17 48593872 48593979 + 2.60088051028 36 0.938361181048 0.153283367554 2.44759714272 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48593871;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593872-48593979%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48593872-48593979&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.141946535746 0.100704554459 0.680423801735 46671234 46671341 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46671233;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593872-48593979%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46671234-46671341&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AHLGDFGGLDLWIVVVITLCFTIYDVLMNYSDALYFVLLCMRPNMGGGLEGGWGALGNHVLLLTSRKFSLMTSRGNSCSMVTNNDDPRIVRADSMRASERGGK Same 519461 chr17:48593872-48593979+ 25947 25947 87 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 1.34161490683 0.4544 0.9996 -0.64565 1.10005 0.102530944296 0.494136709834 15564 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -2.64107777778 0.868 -7.46928888889 4.82821111111 0.132908803258 0.672144420983 8953 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000239151.5,ENST00000552000.2 NCintron,AntiUTR5,AntiNCintron not annotated putative regulatory region 26042 546385 chr21:8399165-8399917+ NoOverlap chr21 8399165 8399917 + 1.39628005212 251 0.133532186961 1.41800594603 -0.0217258939111 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8399164;753;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399165-8399917%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8399165-8399917&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0611933920508 0.100643178749 0.591972705438 159574 160326 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159573;753;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399165-8399917%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159574-160326&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPPEPRGRYAATSRRAAAVSLEA*GAGPGGAAAGADLGGSSKYSNENFEGRSGEGFHVNSS*TWVSRS*EMGERRSEGTGDGLRCPRPIERESGSDPRIRSGGDGRREASSAVTRPIPEKPAGAPGRVLFSL*RAGRPGMGSPRERGPCLGKRRGSGGVR*ALAGP*KSGGEGVNLAPGRTHIRSRSPR*TASGMLEQCR*GKSASRIRNFGIRIGSKGWVGRAGARSGAGRAPRLDEAPPPPPRPGHPPRGPPPPHPAR Same 547798 chr21:8399165-8399917+ 8599 8599 17443 187 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.667994687915 1.02032520325 -0.32061752988 0.2299 -0.107998007968 -0.212619521912 0.00421042508808 0.585590821991 39396 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -2.21268844622 0.1952 -2.17886294821 -0.033825498008 0.0501134675462 0.46441178081 18713 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0540703388502 chr3:9840184-9840335- ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 26043 546446 chr21:8443400-8444152+ NoOverlap chr21 8443400 8444152 + 1.39628005212 251 0.133532186961 1.41800594603 -0.0217258939111 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8443399;753;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443400-8444152%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8443400-8444152&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0611933920508 0.100643178749 0.591972705438 159574 160326 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159573;753;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443400-8444152%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159574-160326&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPPEPRGRYAATSRRAAAVSLEA*GAGPGGAAAGADLGGSSKYSNENFEGRSGEGFHVNSS*TWVSRS*EMGERRSEGTGDGLRCPRPIERESGSDPRIRSGGDGRREASSAVTRPIPEKPAGAPGRVLFSL*RAGRPGMGSPRERGPCLGKRRGSGGVR*ALAGP*KSGGEGVNLAPGRTHIRSRSPR*TASGMLEQCR*GKSASRIRNFGIRIGSKGWVGRAGARSGAGRAPRLDEAPPPPPRPGHPPRGPPPPHPAR Same 547859 chr21:8443400-8444152+ 8600 8600 17443 187 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.667994687915 1.02032520325 -0.349598804781 0.2157 -0.120935856574 -0.228662948207 0.00482029502877 0.584646153847 39107 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -1.79829043825 0.2147 -1.59256533865 -0.205725099602 0.0581101802003 0.463220153636 17184 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0279226089468 chr19:18613872-18614016+ not annotated LSU-rRNA_Hsa 26053 540154 chr2:131381679-131381744- NoOverlap chr2 131381679 131381744 - 3.62804996222 22 0.3190626799 -3.97077732195 7.59882728417 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131381678;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131381679-131381744-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131381679-131381744&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00169302585588 0.100501299056 1.04309957065 132139252 132139317 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;132139251;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131381679-131381744-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A132139252-132139317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MPQLDTST*PIIVSIIVTLFSIIQLK Same 541516 chr2:131381679-131381744- 23207 23207 2846 9 643 131370351 131386316 988 988;1634;5892;16115;21323;24702;26053;30266;32713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131370351-131386316&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.318181818182 0.733333333333 17.8551136364 0.658 -14.2057272727 32.0608409091 0.635962715965 1.10838458039 2369 1235 1235;1643;1841;2007;2369;2922;4039;4272;46168 39.9593954545 0.8808 -30.18485 70.1442454545 0.854497121019 1.1187406796 2301 939 939;1359;1734;1945;2052;2301;2444;3194;23136 0.989387659199 chrM:8366-8572+ 1.0212235401 chrM:8366-8572+ pseudogene extension mitochondrial pseudogene region extended (e.g. ENSG00000284003) 26141 536998 chr2:225399685-225399729+ NoOverlap chr2 225399685 225399729 + 5.39789326986 15 0.999086493222 0.922013421853 4.475879848 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;225399684;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A225399685-225399729%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A225399685-225399729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.13455972137 0.0998833095236 0.749003275028 226264401 226264445 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;226264400;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A225399685-225399729%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A226264401-226264445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLPSLPKQQPEVRQQ*LCAWLGCAGR Same 538368 chr2:225399685-225399729+ 30697 30697 -4556 5 15405 225399685 225399729 Best 26141 26141 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:225399685-225399729&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 0.346153846154 -1.51890666667 0.9986 -4.30959333333 2.79068666667 -0.0223674421989 0.508840535279 55751 Best 55751 55751 -6.13671333333 0.7046 -9.16280666667 3.02609333333 -0.0268036899193 0.470245760465 54191 Best 54191 54191 0.0 0.0 ENST00000431435.1 NC not annotated potentially spurious 26203 520376 chr17:8222832-8222900- NoOverlap chr17 8222832 8222900 - 3.28617826752 23 0.732766759216 -0.907386997472 4.19356526499 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8222831;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8222832-8222900-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8222832-8222900&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0524171407014 0.099448911638 0.804805840473 8126150 8126218 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8126149;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8222832-8222900-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8126150-8126218&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSARWSRGMILASGARGPGFKSRTSPPLPFTETR Same 521786 chr17:8222832-8222900- 27221 27221 -1018 0 1341 8221594 8227025 2014 2014;17863;26203;31694;31965;37522;40474;40990;66443;67460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8221594-8227025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.608695652174 1.11805555556 3.94394782609 0.999 -1.08034347826 5.02429130435 0.355216201336 0.776759399093 4601 2913 2913;4601;11583;16441;20948;21333;25351;28719;65647;67294 3.94655652174 0.3434 -1.09087826087 5.03743478261 0.140867888777 0.623536885706 8484 5986 5986;8484;15863;24228;24536;28672;31456;32683;52097;52689 0.0 0.0 ENST00000315707.3 NC not annotated 6 tRNAs 26231 481123 chr10:75417787-75417825- NoOverlap chr10 75417787 75417825 - 6.18276157746 13 0.819259233175 1.95847701109 4.22428456637 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75417786;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75417787-75417825-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75417787-75417825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.170174341381 0.0992129857961 0.687192485086 77177545 77177583 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77177544;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75417787-75417825-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77177545-77177583&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIYITKPHRAAEVTETVKCVFR Same 483037 chr10:75417787-75417825- 25114 25114 1117 0 3027 75401238 75417825 4228 4228;6685;19248;23964;26231;42519;58489;66465;71052;72621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75401238-75417825&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.564102564103 0.742857142857 4.77152307692 0.9902 1.66607692308 3.10544615385 0.145559251803 0.511216920596 11870 9680 9680;11699;11870;23869;27311;40902;43730;53944;63556;72593 1.97773076923 0.3813 0.652069230769 1.32566153846 9.76360237581e-05 0.395023569784 35309 8483 8483;11906;14750;22472;22714;29979;35309;42843;42916;72930 0.0 0.0 not annotated putative regulatory region 26300 584686 chr8:78645309-78645443+ NoOverlap chr8 78645309 78645443 + 1.95053996278 45 0.224167577969 -4.47862668037 6.42916664316 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78645308;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78645309-78645443%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78645309-78645443&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00668928920116 0.0987956799632 1.06496521338 79557544 79557678 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79557543;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78645309-78645443%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79557544-79557678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDPEALFGAFPAIVQNNRRQHESLPVTVFKESKKSICENGVHSSFTR Same 585617 chr8:78645309-78645443+ 21328 21328 4972 0 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.42962962963 0.321428571429 -0.388368888889 0.0306 -1.34068222222 0.952313333333 0.0196789560134 0.498160331831 32748 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 2.98973111111 0.1095 -4.20334222222 7.19307333333 0.0895300031215 0.800554803534 12609 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 26329 573877 chr6:15245118-15245186- NoOverlap chr6 15245118 15245186 - 2.70692171351 23 0.547696716988 -3.015991404 5.72291311751 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;15245117;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245118-15245186-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A15245118-15245186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.023916438862 0.098611814074 0.951318246781 15245349 15245417 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;15245348;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245118-15245186-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A15245349-15245417&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TACGIEESRACGPEPRGRDARLPR Same 574906 chr6:15245118-15245186- 27154 27154 -825 0 1766 15244943 15246114 2604 2604;15135;20464;24558;26329;27078;34912;61691;69748 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:15244943-15246114&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.753623188406 1.25454545455 -0.605682608696 0.624 -7.29132173913 6.68563913043 0.0432592653157 0.885264247847 24695 9551 9551;16260;24695;37413;40709;45352;56150;59595;63982 -2.8909 0.3729 -10.8208434783 7.92994347826 0.0925723208735 0.73872923607 12289 10022 10022;12289;27835;30484;54557;56016;61735;63783;63901 0.0 0.118394299323 chr14:74921277-74921541- not annotated putative regulatory region 26371 577667 chr7:27143750-27143776+ NoOverlap chr7 27143750 27143776 + 8.77226646741 9 0.864194705119 4.066822052 4.70544441541 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27143749;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143750-27143776%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27143750-27143776&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.158691431419 0.0982973020152 0.642879920633 27183369 27183395 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27183368;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143750-27143776%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27183369-27183395&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YGVRLRITCFCCPVVNPA Same 578706 chr7:27143750-27143776+ 24511 24511 1860 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 2.25 -0.0583444444444 1.0 -0.996166666667 0.937822222222 -0.0420184055332 0.304724635429 67718 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -6.55711111111 0.9317 -3.91206666667 -2.64504444444 -0.0455388766954 0.21754044697 69051 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NCintron,AntiNCintron not annotated putative regulatory region 26383 577671 chr7:27144037-27144075+ NoOverlap chr7 27144037 27144075 + 4.98147697632 13 0.801554072692 -1.75226149651 6.73373847283 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27144036;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27144037-27144075%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27144037-27144075&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0168432973895 0.0981710200782 0.948012304418 27183656 27183694 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27183655;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27144037-27144075%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27183656-27183694&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GYSPLWQNYCISLAVPLGCTNC*AVSCRSR Same 578710 chr7:27144037-27144075+ 25855 25855 528 6 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.589743589744 1.18181818182 -0.0210307692308 0.9957 -4.4569 4.43586923077 0.0137295116509 0.633029327955 35211 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -5.95145384615 0.6501 -13.2284615385 7.27700769231 -0.00203874224797 0.628310778168 36370 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NCintron,AntiNCintron not annotated putative regulatory region 26442 516716 chr17:19580044-19580118+ NoOverlap chr17 19580044 19580118 + 4.67455204487 25 0.531774471656 2.39775203466 2.2768000102 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;19580043;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A19580044-19580118%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A19580044-19580118&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132991265978 0.0977027097132 0.574055814502 19483357 19483431 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;19483356;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A19580044-19580118%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A19483357-19483431&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DGLWGLRGALPPDLRGEAAELAALAGPVVSAASSRPAR Same 518098 chr17:19580044-19580118+ 26908 26908 -466 0 323 19580044 19580344 441 441;26442 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:19580044-19580344&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 0.793184488837 3.31478 0.6721 1.084176 2.230604 0.0625765855002 0.546751720232 20839 428 428;20839 1.17736 0.509 -0.82556 2.00292 0.0891381551259 0.506023348378 12650 786 786;12650 0.0 0.152652064731 chr17:19716433-19716555- ENST00000420951.1,ENST00000574267.1 NC,AntiNCintron pseudogene extension SLC47A1P1 pseudogene extended (ENSG00000228983) 26452 564842 chr5:93602010-93602036+ NoOverlap chr5 93602010 93602036 + 8.83808885018 9 0.848798352026 4.29916659991 4.53892225027 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;93602009;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93602010-93602036%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A93602010-93602036&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.159980313753 0.0976393710535 0.621166270435 92937716 92937742 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;92937715;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93602010-93602036%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A92937716-92937742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPCALIEADNALALSNIYSTTLNTHQMVRDCAASASSLLDFTR Same 565830 chr5:93602010-93602036+ 24719 24719 1733 0 3451 93580856 93603078 4787 4787;9346;11338;11696;13238;18999;26452;26493;26701;27232;28622;33341;37073;38483;40428;50861;66649 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:93580856-93603078&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.0125 1.57148888889 0.9998 -0.375666666667 1.94715555556 -0.0215248181878 0.379894844289 55188 5022 5022;8932;13700;14826;16126;17841;21763;24145;29213;36125;41771;51124;51917;55188;59615;61664;73562 -0.326522222222 0.8655 -3.65126666667 3.32474444444 -0.0092256299795 0.443674797392 40451 5814 5814;6596;9096;16343;18747;24073;27385;33273;39453;40451;41327;42891;44550;46827;53732;65452;67088 0.0 0.0 ENST00000623223.1 NC not annotated potentially spurious 26481 524600 chr18:54415951-54415986+ NoOverlap chr18 54415951 54415986 + 4.85891658068 12 0.753960987767 -3.0777083089 7.93662488957 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;54415950;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54415951-54415986%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A54415951-54415986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0492391213006 0.0974087619498 1.00993411832 51942321 51942356 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;51942320;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54415951-54415986%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A51942321-51942356&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFDFLDGTIQWAR Same 526036 chr18:54415951-54415986+ 26764 26764 -283 0 663 54415278 54424623 1020 1020;1399;1951;1974;2187;2640;3987;7059;26481;56311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:54415278-54424623&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 11.7853083333 0.8706 -4.30754166667 16.09285 0.482749991212 1.0254642131 3255 1312 1312;1532;1793;1867;1963;3255;3308;3468;3714;4481 26.379325 0.5915 -5.09676666667 31.4760916667 0.896533464354 1.04753931239 2121 85 85;217;311;1380;1426;2121;2398;2457;2578;2838 0.0 0.0 pseudogene unitary pseudogene ENSG00000283613 26493 564849 chr5:93603028-93603078+ NoOverlap chr5 93603028 93603078 + 4.75395877221 17 0.798397802701 0.889041101231 3.86491767098 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;93603027;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93603028-93603078%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A93603028-93603078&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.152807608182 0.0973512655759 0.702983968611 92938734 92938784 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;92938733;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93603028-93603078%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A92938734-92938784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MIREKINICFPKIKCAK Same 565837 chr5:93603028-93603078+ 25966 25966 527 0 3451 93580856 93603078 4787 4787;9346;11338;11696;13238;18999;26452;26493;26701;27232;28622;33341;37073;38483;40428;50861;66649 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:93580856-93603078&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.313725490196 0.796875 0.355052941176 1.0 -1.95048235294 2.30553529412 0.0286803458425 0.484985438996 29213 5022 5022;8932;13700;14826;16126;17841;21763;24145;29213;36125;41771;51124;51917;55188;59615;61664;73562 -6.95104705882 0.7009 -11.3662823529 4.41523529412 -0.0153060770147 0.537634237262 44550 5814 5814;6596;9096;16343;18747;24073;27385;33273;39453;40451;41327;42891;44550;46827;53732;65452;67088 0.0 0.0 ENST00000623223.1 NC not annotated potentially spurious 26560 497011 chr12:114896133-114896162- NoOverlap chr12 114896133 114896162 - 5.5418700695 10 0.760677500572 -3.42683005454 8.96870012404 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;114896132;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A114896133-114896162-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A114896133-114896162&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0685949820333 0.0967306742987 1.03216578703 115333938 115333967 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;115333937;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A114896133-114896162-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A115333938-115333967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLTDLPTSNFCHCVYSTRNPEKKAVEK Same 499019 chr12:114896133-114896162- 26704 26704 -144 0 1355 114895933 114896645 2030 2030;24060;26560 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:114895933-114896645&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.433333333333 0.0 5.59502 0.9884 -8.88981 14.48483 0.341833773571 1.0390972756 4802 4432 4432;4802;16359 -3.80711 0.5066 -18.7129 14.90579 0.0665168781319 0.887969995958 15708 7292 7292;15708;37215 0.0 0.0 not annotated putative regulatory region 26566 515917 chr17:2215697-2215813+ NoOverlap chr17 2215697 2215813 + 1.54732557214 39 0.862910208481 -2.61377702004 4.16110259218 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2215696;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2215697-2215813%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2215697-2215813&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.130841930951 0.096690831438 0.894905892264 2118991 2119107 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2118990;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2215697-2215813%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2118991-2119107&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSTVLVCVGGDLTAFQILREVKKSAKTQREKEREKKIPHPAFSCQQCEVPRD*FYVWPGNATLK Same 517293 chr17:2215697-2215813+ 25960 25960 606 4 7511 2213699 2215813 10766 10766;26566;59469 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2213699-2215813&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.4875 -1.33652307692 0.9874 -4.95466666667 3.61814358974 0.103182064159 0.716364397606 15508 Best 15508 15508;18461;64284 -7.02578205128 0.8073 -10.188425641 3.16264358974 0.0290859171962 0.59297915365 24030 8934 8934;24030;43013 0.0 0.0 ENST00000263073.10,ENST00000572205.5,ENST00000413674.1 AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated potentially spurious 26602 473168 chr1:90832085-90832138- NoOverlap chr1 90832085 90832138 - 4.54882775082 18 0.821974686978 1.02258351445 3.52624423636 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90832084;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90832085-90832138-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90832085-90832138&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.165447743524 0.0964588583389 0.672708636734 91297642 91297695 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91297641;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90832085-90832138-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91297642-91297695&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EQALNYCQKNKRSSTVLLGDLRGQLVTTPR Same 475047 chr1:90832085-90832138- 25985 25985 617 0 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 1.05882352941 -0.504316666667 1.0 -4.62378333333 4.11946666667 0.0452739418797 0.649398528729 24241 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -7.69906666667 0.9267 -12.5693166667 4.87025 -0.0196111480384 0.55924694831 47783 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NC not annotated putative regulatory region 26620 498457 chr13:63746801-63746863+ NoOverlap chr13 63746801 63746863 + 3.64128098034 21 0.32759812096 -4.17134293772 7.81262391806 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;63746800;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A63746801-63746863%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A63746801-63746863&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0032375595623 0.0963184612179 1.04566510946 64320934 64320996 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;64320933;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A63746801-63746863%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A64320934-64320996&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NPSQFSPLDNMCCNYYGNSCGYGSSYGCGYGSGYGYGYGSSYGCGYGTGYSCGYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGYSCGYGSGSGCGYGTGFGCGYGCGYGTGYGCGCGSGSGYCGYRPFCFR Same 500473 chr13:63746801-63746863+ 23455 23455 3165 0 13409 63746801 63746998 21750 21750;26620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:63746801-63746998&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539682539683 0.21875 0.38039047619 0.0798 -3.52945714286 3.90984761905 0.0316833209857 0.659134549552 28062 21215 21215;28062 0.326138095238 0.0779 -5.36281428571 5.68895238095 0.0022506102168 0.638221868402 34234 19813 19813;34234 0.214044381378 chr21:30755139-30755378- 0.536552747487 chr21:30491831-30491957- ENST00000453638.2 NC not annotated potentially spurious 26624 531723 chr19:48479256-48479282- NoOverlap chr19 48479256 48479282 - 9.04248889287 9 0.923577732001 5.60683342814 3.43565546473 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48479255;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48479256-48479282-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48479256-48479282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.177377042298 0.0962825209495 0.478463795372 48982513 48982539 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48982512;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48479256-48479282-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48982513-48982539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IFQTGNQDPQPQGPGVRPPR Same 533198 chr19:48479256-48479282- 25733 25733 891 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.814814814815 0.241071428571 3.96093333333 0.9673 -1.92095555556 5.88188888889 0.05796940379 0.70355472269 21592 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -6.73536666667 0.5409 -13.8311888889 7.09582222222 -0.0378671981156 0.583474938173 63614 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.0 ENST00000427476.4,ENST00000391881.7,ENST00000620214.1 AntiUTR3,AntiNC,AntiCDSintron coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 26626 514148 chr16:50391136-50391195- NoOverlap chr16 50391136 50391195 - 3.95065503567 20 0.80141451133 0.116174985468 3.83448005021 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;50391135;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A50391136-50391195-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A50391136-50391195&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.122300431324 0.0962586496654 0.734274806838 50425047 50425106 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;50425046;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A50391136-50391195-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A50425047-50425106&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSYKKD*RLLFSLCF*FQPSLYLAFIR Same 515800 chr16:50391136-50391195- 26416 26416 210 11 6446 50386980 50391447 9104 9104;25045;26626;71071 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:50386980-50391447&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.45 0.394736842105 0.249525 0.9985 -4.34733 4.596855 0.104305587983 0.709004064184 15399 2539 2539;8394;15399;20670 -8.96876 0.8044 -12.734165 3.765405 -0.0283298309676 0.5197274692 55618 4491 4491;17207;30914;55618 0.0 0.0 ENST00000566876.1 NC not annotated potentially spurious 26656 509996 chr15:95464791-95464832- NoOverlap chr15 95464791 95464832 - 6.20544296929 14 0.956694895857 3.6521857466 2.55325722269 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;95464790;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95464791-95464832-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A95464791-95464832&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.219990903387 0.0960280975443 0.484161110841 96008020 96008061 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;96008019;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95464791-95464832-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A96008020-96008061&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YHIISVFFLTRYRRFKDKW Same 511731 chr15:95464791-95464832- 27596 27596 -940 0 5012 95454977 95464832 6935 6935;26656;62257;72347 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:95454977-95464832&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.380952380952 1.33333333333 -1.95482857143 1.0 -2.06536428571 0.110535714286 -0.0431008135023 0.282180573208 68270 30292 30292;68270;69892;73588 -12.5391785714 0.93 -11.9801 -0.559078571429 -0.0408681030584 0.297518077138 65875 17131 17131;65875;68290;73140 0.0 0.0 ENST00000554412.2,ENST00000554837.5 NC,AntiNCintron not annotated potentially spurious 26677 594047 chr9:136254542-136254577- NoOverlap chr9 136254542 136254577 - 6.6447499916 12 0.609975585565 0.334600061178 6.31014993042 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136254541;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136254542-136254577-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136254542-136254577&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0709970901204 0.0959519385889 0.890569134067 139146388 139146423 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139146387;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136254542-136254577-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139146388-139146423&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGSELSEASSKVWEEDCEEDLPEPCTGAKPASGSSLPAGGSLGLGSGVEPQVAPPSPR Same 595003 chr9:136254542-136254577- 28086 28086 -1409 0 518 136245441 136267514 774 774;1246;1671;1737;14484;26677;40966;49975;52795 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136245441-136267514&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.0 15.7653 0.9283 8.125975 7.639325 0.552444672789 0.778692006928 2801 109 109;1226;1522;2295;2801;2860;36147;58996;63557 8.34746666667 0.4298 -0.824375 9.17184166667 0.193491214132 0.696001852152 6432 1329 1329;2089;2472;2567;3628;6432;23671;29069;54815 0.0 0.0 not annotated putative regulatory region 26717 496186 chr12:70446123-70446164- NoOverlap chr12 70446123 70446164 - 4.18667852879 14 0.406510152699 -7.13252852644 11.3192070552 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70446122;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70446123-70446164-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70446123-70446164&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000805026078921 0.0957143281171 1.02781399667 70839903 70839944 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70839902;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70446123-70446164-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70839903-70839944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IQEHFKTMQQAKLGALMLALQTFPHQDINIISDSSYAVCSITHLDLAHLK Same 498186 chr12:70446123-70446164- 20450 20450 6267 0 155 70445357 70448659 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.428571428571 0.0 -1.05167142857 0.1379 -2.74455714286 1.69288571429 0.024723045334 0.40804099796 30715 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 6.74356428571 0.1414 1.87037142857 4.87319285714 0.0282364666419 0.543134280824 24292 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 26726 518085 chr17:48610729-48610767+ NoOverlap chr17 48610729 48610767 + 4.26791540476 13 0.697398336767 -3.87021551224 8.138130917 ENST00000239165.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48610728;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48610729-48610767%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48610729-48610767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0761170674699 0.0956584619386 1.02433560123 46688091 46688129 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46688090;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48610729-48610767%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46688091-46688129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGPPCPPRRGTSPASRRR Same 519486 chr17:48610729-48610767+ 27659 27659 -933 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.769230769231 0.882352941176 -5.48548461538 0.9682 -13.5391923077 8.05370769231 -0.0127189830631 0.869898181058 49005 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -37.7510307692 0.9406 -52.4533153846 14.7022846154 0.028375190755 0.282865251883 24247 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000239165.8,ENST00000567101.2 AntiCDS,AntiNCintron not annotated putative regulatory region 26782 492396 chr12:69359661-69359687+ NoOverlap chr12 69359661 69359687 + 7.38521114985 9 0.672244686893 -2.2101777792 9.59538892905 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;69359660;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A69359661-69359687%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A69359661-69359687&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0147005090504 0.0952490556039 1.03178260925 69753441 69753467 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;69753440;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A69359661-69359687%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A69753441-69753467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHLLFPAFHFFFGLELLHWSCDVTAAARRVRSVHCVR Same 494378 chr12:69359661-69359687+ 28814 28814 -2032 0 625 69353147 69360016 958 958;26782;65226 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:69353147-69360016&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 1.09090909091 10.5949666667 0.7859 -0.350888888889 10.9458555556 0.190455011953 0.967956728686 9208 7219 7219;9208;65690 11.1521888889 0.2709 -0.870811111111 12.023 0.0969356095872 0.763563879239 11806 3841 3841;11806;70149 0.0 0.0 not annotated putative regulatory region 26785 559139 chr4:71236180-71236209+ NoOverlap chr4 71236180 71236209 + 7.82411015034 10 0.881803616388 3.21817989349 4.60593025684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;71236179;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A71236180-71236209%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A71236180-71236209&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.161956727875 0.0952419039681 0.667182086815 72101897 72101926 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;72101896;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A71236180-71236209%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A72101897-72101926&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDFHKRSSRALQTHQTSSLGIFFFFLLSSFLK Same 560124 chr4:71236180-71236209+ 25137 25137 1648 0 245 71236180 71236576 312 312;26785 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:71236180-71236576&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 1.36363636364 2.61695 1.0 -5.01259 7.62954 0.0988012977894 0.843015353213 15976 771 771;15976 -9.25697 0.731 -14.83813 5.58116 -0.0489926300659 0.518477544614 70936 971 971;70936 0.0 0.0 ENST00000264485.9 UTR5intron coding exon(s) SLC4A4 5' exons 26802 512399 chr16:73885110-73885160+ NoOverlap chr16 73885110 73885160 + 4.21575880051 17 0.837560531193 -0.767847019083 4.98360581959 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;73885109;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73885110-73885160%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A73885110-73885160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0731715191339 0.0951079749853 0.834353447515 73919009 73919059 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;73919008;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73885110-73885160%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A73919009-73919059&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IWKEFGVDWPTPFHFLQMFTI Same 514043 chr16:73885110-73885160+ 26217 26217 585 0 802 73871387 73890893 1245 1245;5929;26802;45887 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:73871387-73890893&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.509803921569 0.0 -2.25251176471 0.9997 -3.0719 0.819388235294 -0.0440365337609 0.35598619186 68737 10495 10495;22286;51299;68737 -3.77925882353 0.5508 -4.22622352941 0.446964705882 -0.022884064527 0.386094330391 50590 6191 6191;30661;47708;50590 0.0 0.0 not annotated putative regulatory region 26845 542440 chr2:236238735-236238773- NoOverlap chr2 236238735 236238773 - 5.93283077845 13 0.727554859118 0.534977030296 5.39785374816 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;236238734;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A236238735-236238773-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A236238735-236238773&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.104035438451 0.0947498815397 0.822961907599 237147378 237147416 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;237147377;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A236238735-236238773-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A237147378-237147416&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFLPCEILPLDVYSPGTTSPISTSAPGR Same 543819 chr2:236238735-236238773- 27114 27114 -269 0 542 236208836 236241502 822 822;6974;25987;26845;30832;31542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:236208836-236241502&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.589743589744 0.764705882353 -2.9053 0.8896 -4.72889230769 1.82359230769 -0.0338487796928 0.413936941651 62940 615 615;4249;12585;50927;61830;62940 -11.3771076923 0.4519 -11.0740461538 -0.303061538462 -0.0241537318148 0.3068697539 51714 201 201;4904;10592;24510;51714;55952 0.0 0.0 ENST00000409749.7,ENST00000415226.1 CDSintron,AntiNCintron coding exon(s) ASB18 intronic alternative ATG 26874 518063 chr17:48594060-48594086+ NoOverlap chr17 48594060 48594086 + 7.14915552404 9 0.908400091554 -0.376477956772 7.52563348081 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48594059;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48594060-48594086%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48594060-48594086&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0393592397581 0.0945255315707 0.947182103576 46671422 46671448 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46671421;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48594060-48594086%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46671422-46671448&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RERGRETAMAAGGCLPAGSLQAPCSR Same 519464 chr17:48594060-48594086+ 25122 25122 1752 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 1.29807692308 -1.92072222222 0.9864 -9.60913333333 7.68841111111 -0.0349764173967 0.833837691 63666 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -11.1832 0.5893 -17.3798222222 6.19662222222 -0.0464386472987 0.519954988582 69627 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000552000.2 NCintron,AntiNCintron not annotated putative regulatory region 26978 524452 chr18:47594690-47594737+ NoOverlap chr18 47594690 47594737 + 6.0630061808 16 0.595029373617 2.99094361835 3.07206256245 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;47594689;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47594690-47594737%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A47594690-47594737&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.141612412586 0.0938998932283 0.578167904133 45121061 45121108 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;45121060;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47594690-47594737%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A45121061-45121108&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGTCNANGLTQAEQTFLQHNHSSQSKGLWGAEMRQDR Same 525888 chr18:47594690-47594737+ 27578 27578 -600 0 9000 47594360 47602035 13245 13245;26978;27676;41264;47167;69881;72567 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:47594360-47602035&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5625 0.282352941176 2.08978125 0.9478 1.25626875 0.8335125 0.0245297477148 0.348091942998 30783 6593 6593;11265;14639;28210;30783;58565;63900 -7.0251125 0.8013 -10.90708125 3.88196875 -0.026153197393 0.508475700042 53603 7430 7430;14557;25346;33451;40777;53603;69649 0.0 0.0 not annotated potentially spurious 26982 488618 chr11:66728902-66728928- NoOverlap chr11 66728902 66728928 - 6.48913338449 9 0.800503547723 -2.33924453788 8.82837792238 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;66728901;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66728902-66728928-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A66728902-66728928&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0277297992555 0.0938528989256 1.01834815701 66496373 66496399 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;66496372;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66728902-66728928-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A66496373-66496399&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TNLHCAMEMFWEGEPAQLPEGGRESEGTGER Same 490606 chr11:66728902-66728928- 26395 26395 587 0 533 66718423 66728928 806 806;4911;26982;44139;59450;60343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:66718423-66728928&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.703703703704 1.15714285714 -1.05257777778 0.9546 -10.9567222222 9.90414444444 -0.00796148573169 0.953434939803 45869 593 593;16712;20471;28103;45869;62074 -1.00688888889 0.4193 -10.8438555556 9.83696666667 0.0100108428491 0.707405035176 30758 1083 1083;7192;12271;30758;47247;67889 0.0 0.0 ENST00000527010.1 UTR5 coding exon(s) SPTBN2 alternative first coding exon. 27078 573878 chr6:15245158-15245196- NoOverlap chr6 15245158 15245196 - 7.50733835193 13 0.53813875146 4.35273086108 3.15460749085 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;15245157;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245158-15245196-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A15245158-15245196&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.120580855105 0.0932659707437 0.533095652424 15245389 15245427 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;15245388;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245158-15245196-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A15245389-15245427&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVWSASEELPTPALLRPPGPGPPPLAAASPLPARPAPTRGANRLWNRGIAR Same 574907 chr6:15245158-15245196- 28259 28259 -1181 0 1766 15244943 15246114 2604 2604;15135;20464;24558;26329;27078;34912;61691;69748 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:15244943-15246114&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.717948717949 1.8 -1.17780769231 0.5984 -3.94616153846 2.76835384615 -0.0229475226668 0.491238193767 56150 9551 9551;16260;24695;37413;40709;45352;56150;59595;63982 -7.69576923077 0.3734 -8.3801 0.684330769231 -0.0287842539473 0.358728824951 56016 10022 10022;12289;27835;30484;54557;56016;61735;63783;63901 0.0 0.120548066913 chr14:74921277-74921541- not annotated putative regulatory region 27107 504794 chr14:76131383-76131418- NoOverlap chr14 76131383 76131418 - 4.37902491291 12 0.664231581089 -4.60525003076 8.98427494367 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;76131382;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76131383-76131418-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A76131383-76131418&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0909668623453 0.0930958841002 1.04169998904 76597726 76597761 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;76597725;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76131383-76131418-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A76597726-76597761&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EVTVNIGTRHCRSDRSHAVFPLPSPPPPSSEAPGSALPPSPPTGK Same 506640 chr14:76131383-76131418- 27775 27775 -668 0 1204 76131383 76139120 1818 1818;4345;22997;27107;30537;31486;38498;41376;68067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:76131383-76139120&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 1.125 -1.93615833333 0.9407 -4.369925 2.43376666667 -0.0419513817934 0.455720588083 67676 4515 4515;9493;16210;27689;28296;48242;62795;67676;71399 -4.82700833333 0.7241 -8.42496666667 3.59795833333 -0.0277296377408 0.474980283013 55020 13549 13549;42486;43506;45749;54311;55020;58474;69721;73189 0.0 0.0 not annotated putative regulatory region 27109 540666 chr2:159712512-159712541- NoOverlap chr2 159712512 159712541 - 8.61409020424 10 0.820840772107 6.78863985389 1.82545035034 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;159712511;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159712512-159712541-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A159712512-159712541&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.205352133506 0.0930835284466 0.30250623663 160569023 160569052 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;160569022;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159712512-159712541-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A160569023-160569052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNAVGSEAQWRPPLSRIRR None NA NA 0 3512 159712300 159712541 4866 4866;24749;27109 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:159712300-159712541&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 1.04166666667 3.30357 0.9447 -2.53156 5.83513 0.0460795200796 0.713153684107 24038 6812 6812;24038;52172 0.69395 0.3265 -6.19047 6.88442 8.33510027345e-05 0.598994432132 35317 13743 13743;35317;47510 0.0 0.0 ENST00000259050.8,ENST00000473749.1 AntiUTR5,AntiNC not annotated putative regulatory region 27168 494600 chr12:22116662-22116733- NoOverlap chr12 22116662 22116733 - 2.86578756385 24 0.78626115816 -1.56149169058 4.42727925442 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;22116661;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22116662-22116733-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A22116662-22116733&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00579095502323 0.0926948473487 0.839305475139 22269596 22269667 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;22269595;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A22116662-22116733-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A22269596-22269667&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KISFSEMRNDAAKENCDPNHTICASHLAGTWYLGK Same 496597 chr12:22116662-22116733- 27561 27561 -393 0 58 22116633 22134940 65 65;1060;2224;6558;10486;27168 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:22116633-22134940&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.361111111111 0.428571428571 6.02357083333 0.9553 -2.83639166667 8.8599625 0.597286599735 1.01387516152 2558 904 904;2475;2558;2619;3486;6653 20.2301041667 0.5847 -0.150008333333 20.3801125 0.99956746014 1.03215713751 1118 88 88;1118;2424;2918;3483;7533 0.0 0.0 ENST00000537795.1 NCintron pseudogene unitary pseudogene ENSG00000283582 27175 535533 chr2:159396069-159396179+ NoOverlap chr2 159396069 159396179 + 1.77539190247 37 0.822397769708 -2.10380279051 3.87919469299 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;159396068;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159396069-159396179%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A159396069-159396179&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0834016436775 0.0926429601469 0.857815290248 160252580 160252690 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;160252579;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159396069-159396179%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A160252580-160252690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TWRQCKQKHTRFTYGQL*CSFKSWQNKKHNGWLEQVSYLTSAIR Same 536894 chr2:159396069-159396179+ 27088 27088 87 17 10752 159396069 159397027 16402 16402;27175;69754 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:159396069-159397027&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.414414414414 0.0 -1.13202432432 0.9967 -2.27211081081 1.14008648649 0.0230485814492 0.484830254623 31372 Best 31372 31372;37922;55784 -7.1960972973 0.8067 -8.5511972973 1.3551 -0.0052344014982 0.508579416464 38148 Best 38148 38148;42310;66741 0.0 0.0 ENST00000594921.1,ENST00000420020.5,ENST00000294905.4,ENST00000551504.5 NC,NCintron,AntiCDSintron,AntiNCintron not annotated potentially spurious 27214 574894 chr6:41531895-41531924- NoOverlap chr6 41531895 41531924 - 7.74070001245 10 0.928300907912 3.00001030564 4.7406897068 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;41531894;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A41531895-41531924-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A41531895-41531924&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.153264718817 0.0923326960743 0.68493644035 41499633 41499662 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;41499632;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A41531895-41531924-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A41499633-41499662&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWLQEIVYFFRTVA Same 575927 chr6:41531895-41531924- 26196 26196 1018 0 15867 41523976 41531924 Best 27214 27214;51214 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:41523976-41531924&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4 1.875 -0.18423 0.9965 -3.37721 3.19298 -0.0323563805377 0.499764404672 61993 27564 27564;61993 -6.86197 0.5775 -5.80217 -1.0598 -0.0394571440024 0.277285022001 64817 49410 49410;64817 0.0 0.0 ENST00000414386.5 NCintron not annotated potentially spurious 27284 473184 chr1:90835627-90835662- NoOverlap chr1 90835627 90835662 - 4.46902499596 12 0.477011011927 -6.94339994589 11.4124249419 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90835626;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835627-90835662-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90835627-90835662&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0226518561297 0.0917508022022 1.03006586219 91301184 91301219 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91301183;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835627-90835662-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91301184-91301219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVAWGSGFGGCSSSASRPLARARGSSPGQPR Same 475063 chr1:90835627-90835662- 21557 21557 5727 0 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.722222222222 1.09090909091 -11.0064666667 0.6034 -18.6142083333 7.60774166667 -0.019521658474 0.800473773918 53824 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -17.4142833333 0.3176 -23.753225 6.33894166667 0.0261688027436 0.477980510426 24947 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 27299 478468 chr10:100864660-100864824+ NoOverlap chr10 100864660 100864824 + 2.30945464806 55 0.870814623692 0.771549111605 1.53790553646 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100864659;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100864660-100864824%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100864660-100864824&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.19881220944 0.091665166882 0.627370499631 102624417 102624581 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102624416;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100864660-100864824%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102624417-102624581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LERVPRSFIPHHMGPKAKSSAKRLNQVCRTKCYELTLWVYNFMPFVAICLSKQPPFHTDIQTHTFPPTLHPSGAPTPNQGQR Same 480363 chr10:100864660-100864824+ 26288 26288 1011 0 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.430303030303 0.798387096774 0.446267272727 1.0 -1.50639818182 1.95266545455 0.215452701741 0.620984894273 8167 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 -0.863070909091 0.6992 -4.79882363636 3.93575272727 0.226530241493 0.674874322079 5621 Best 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 27301 541021 chr2:173198665-173198760- NoOverlap chr2 173198665 173198760 - 3.27300307155 32 0.956703955901 2.10298134154 1.17002173001 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;173198664;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198665-173198760-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A173198665-173198760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.254840349656 0.0916522597334 0.481654007715 174063393 174063488 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;174063392;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198665-173198760-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A174063393-174063488&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGTQHKRCLRH*SSFEMERLCMKKRTVMPLPRQFQ Same 542392 chr2:173198665-173198760- 27146 27146 155 9 8077 173198177 173198791 11645 11645;14566;27301;64264;68000;70384;71375 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:173198177-173198791&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.479166666667 0.727272727273 -2.759634375 0.9991 -2.283321875 -0.4763125 -0.0717056015019 0.309460180244 73136 17915 17915;26281;30225;52527;56025;63590;73136 -8.046 0.6059 -8.01403125 -0.03196875 -0.0398010370069 0.429189284663 65076 26199 26199;30281;33015;38868;44044;58152;65076 0.0 0.0 ENST00000423106.2,ENST00000419609.5,ENST00000338983.7,ENST00000476618.5 NC,NCintron,AntiCDSintron,AntiNCintron not annotated potentially spurious 27401 489905 chr11:122309284-122309334- NoOverlap chr11 122309284 122309334 - 4.65478824167 17 0.841359130056 0.804411860073 3.85037638159 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;122309283;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A122309284-122309334-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A122309284-122309334&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.148428826562 0.0910272796787 0.702088384527 122179992 122180042 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;122179991;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A122309284-122309334-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A122179992-122180042&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EHGAEVAPDTLELRCHCCGCYSPR Same 491899 chr11:122309284-122309334- 26637 26637 764 0 15954 122309284 122309334 Best 27401 27401 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:122309284-122309334&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.490196078431 0.326923076923 0.2662 0.963 -0.657158823529 0.923358823529 -0.00719574753901 0.365073142214 45404 Best 45404 45404 -2.90917058824 0.4716 -2.73158235294 -0.177588235294 -0.0235174799195 0.362636913393 51153 Best 51153 51153 0.0 0.0 ENST00000529804.5,ENST00000526674.1 NC,NCintron not annotated potentially spurious 27432 597263 chrX:135119106-135119168- NoOverlap chrX 135119106 135119168 - 3.7686857496 21 0.326298924239 -3.59352867376 7.36221442336 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;135119105;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A135119106-135119168-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A135119106-135119168&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00174382702665 0.0908535710234 1.0315446056 134253032 134253094 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;134253031;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A135119106-135119168-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A134253032-134253094&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPTENVLIFLINRQLGRHRSDIDLSR Same 597913 chrX:135119106-135119168- 24550 24550 2882 0 15966 135119106 135119168 Best 27432 27432 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:135119106-135119168&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.321428571429 5.18689047619 0.4742 -6.36908095238 11.5559714286 0.227772614829 1.06508652296 7701 Best 7701 7701 5.18689047619 0.1482 -6.36908095238 11.5559714286 0.163706128493 0.864528449777 7393 Best 7393 7393 0.0 0.0 ENST00000423661.1,ENST00000453528.1 NC,AntiNCintron protein-coding gene protein coding gene ENSG00000224107 27447 518051 chr17:48590257-48590364+ NoOverlap chr17 48590257 48590364 + 3.13823045625 36 0.917009570798 2.31466672321 0.823563733035 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48590256;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48590257-48590364%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48590257-48590364&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.292366729884 0.0907552539863 0.458381604968 46667619 46667726 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46667618;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48590257-48590364%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46667619-46667726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSGECEIYCAVSTPQNHKTNFMDLT*LSRASEGYLSDFSAIFTI Same 519452 chr17:48590257-48590364+ 26986 26986 461 13 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.462962962963 0.869565217391 -0.371097222222 0.991 -0.435525 0.0644277777778 0.0223019787179 0.390379254848 31683 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -9.99090555556 0.9256 -9.93617777778 -0.0547277777778 -0.0398959643222 0.432809851188 65145 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000465846.6,ENST00000498678.5,ENST00000552000.2 NCintron,AntiUTR5,AntiNCintron not annotated putative regulatory region 27488 577675 chr7:27147698-27147730+ NoOverlap chr7 27147698 27147730 + 8.13919091496 11 0.728206301976 6.04650003531 2.09269087965 ENST00000222728.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27147697;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147698-27147730%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27147698-27147730&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.194509146448 0.0905054874182 0.357921079919 27187317 27187349 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27187316;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147698-27147730%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27187317-27187349&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPGRWEGSRGKWDSQNR Same 578714 chr7:27147698-27147730+ 27116 27116 372 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 0.589285714286 -1.71801818182 0.9829 -2.54701818182 0.829 -0.0440882830469 0.317937051166 68767 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -24.3446454545 0.9157 -26.9989454545 2.6543 0.0161784951992 0.261931075313 28320 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222728.3,ENST00000467897.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 27512 501052 chr14:29389901-29389954+ NoOverlap chr14 29389901 29389954 + 4.49540549186 18 0.944106202792 0.774183359411 3.72122213244 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;29389900;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A29389901-29389954%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A29389901-29389954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.145063129004 0.0903415739724 0.697511042076 29859107 29859160 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29859106;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A29389901-29389954%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29859107-29859160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MFVKQGEKSDWHCRDSKR Same 502944 chr14:29389901-29389954+ 28745 28745 -1233 0 14267 29380951 29390501 23607 23607;27512;35606;68965;71384 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:29380951-29390501&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.407407407407 1.02857142857 -0.170277777778 1.0 -1.84517777778 1.6749 0.00903359008087 0.436924375771 37208 16283 16283;37208;54952;57031;73776 -5.16142222222 0.7331 -11.5478055556 6.38638333333 0.0291644698898 0.633972621846 24002 Best 24002 24002;41979;56295;66595;73483 0.0 0.0 not annotated potentially spurious 27537 547901 chr22:16845049-16845078+ NoOverlap chr22 16845049 16845078 + 7.79464001656 10 0.576394293126 0.209819972515 7.58482004404 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;16845048;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A16845049-16845078%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A16845049-16845078&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0569597269547 0.0901832502163 0.951095107203 17325939 17325968 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;17325938;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A16845049-16845078%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A17325939-17325968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPNLGPDWAVITGTD Same 549315 chr22:16845049-16845078+ 29059 29059 -1522 0 702 16844398 16846040 1086 1086;1985;4677;27537 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:16844398-16846040&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.0 3.53218 0.1836 0.29774 3.23444 0.0234290608699 0.493624530396 31233 14497 14497;19551;22883;31233 13.24689 0.5018 0.27275 12.97414 0.362241058382 0.798020177343 4162 45 45;67;2554;4162 0.0 0.0 pseudogene uncharacterised pseudogene (ENSG00000283535) 27554 585614 chr8:144050302-144050370+ NoOverlap chr8 144050302 144050370 + 3.15987392353 23 0.578096005785 -1.67235207558 4.83222599911 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144050301;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144050302-144050370%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144050302-144050370&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00200026098562 0.090084373249 0.872349081361 145105203 145105271 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145105202;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144050302-144050370%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145105203-145105271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELTAQDAGPNLEPSPPHPPLPHAEDGPLRSKQLTPLLDWAEKFGAEK Same 586552 chr8:144050302-144050370+ 28993 28993 -1439 0 591 144049161 144051191 902 902;1476;2944;3502;6411;8419;8554;19953;27554 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144049161-144051191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.80701754386 1.44997826087 0.7842 -4.85913043478 6.30910869565 0.148428066888 0.870015788234 11683 822 822;1234;1275;2096;2721;3466;4144;4232;11683 6.6732 0.5977 -5.12920434783 11.8024043478 0.494306911634 0.881667913598 3550 1010 1010;1721;1924;2036;2359;2452;2682;3550;3684 0.0 0.24127022183 chr16:68364751-68364906- ENST00000528912.1 NC pseudogene unitary pseudogene (ENSG00000204791) 27589 476955 chr10:23174552-23174599+ NoOverlap chr10 23174552 23174599 + 3.95050632209 16 0.531426909285 -3.46311864257 7.41362496465 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;23174551;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23174552-23174599%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A23174552-23174599&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0107420570811 0.0898110951413 1.01091705008 23463481 23463528 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;23463480;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23174552-23174599%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A23463481-23463528&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVNQRRAGRGRPGWGRAGWSQSPAPAPPASR Same 478850 chr10:23174552-23174599+ 27036 27036 553 0 873 23173215 23174753 1346 1346;12304;15950;27589;28990;57664;61491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:23173215-23174753&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.854166666667 0.61935483871 -6.75725625 0.7354 -10.06478125 3.307525 -0.013490468385 0.549202454356 49514 13233 13233;19886;24016;28278;48646;49514;73112 -7.96736875 0.3838 -9.4283125 1.46094375 -0.033399470409 0.407306182326 60114 17548 17548;26780;29885;33897;60100;60114;62222 0.0 0.37702144638 chr20:59191020-59194757+ not annotated putative regulatory region 27623 472681 chr1:62997933-62997977- NoOverlap chr1 62997933 62997977 - 5.40293988387 15 0.863489738308 1.86604002913 3.53689985474 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;62997932;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62997933-62997977-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A62997933-62997977&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.178923632364 0.0895410933344 0.633946769854 63463604 63463648 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;63463603;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62997933-62997977-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A63463604-63463648&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSLPLSRSGAAACRALSFMRK Same 474560 chr1:62997933-62997977- 26668 26668 955 0 668 62997933 63000329 1026 1026;13743;18049;27623;33268;34189;37177;59194;68808 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:62997933-63000329&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.577777777778 0.798816568047 3.09531333333 0.9938 -3.73653333333 6.83184666667 0.214751055119 0.839959299296 8200 6220 6220;8200;13946;16945;28973;32781;63612;68420;69109 -0.845953333333 0.9197 -10.3945666667 9.54861333333 0.0997432373506 0.74963537125 11538 6223 6223;11538;12991;22844;28460;29330;40736;45828;71146 0.0 0.0 not annotated putative regulatory region 27629 478469 chr10:100866615-100866641+ NoOverlap chr10 100866615 100866641 + 9.2504334516 9 0.817768283275 6.65497793092 2.59545552068 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100866614;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100866615-100866641%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100866615-100866641&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.175620804079 0.0894971656151 0.368345660092 102626372 102626398 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102626371;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100866615-100866641%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102626372-102626398&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDAAGGRGCPR Same 480364 chr10:100866615-100866641+ 26677 26677 952 0 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.6 -2.18572222222 0.8735 -4.22914444444 2.04342222222 -0.0287375908474 0.401723811223 59752 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 -3.88145555556 0.368 -9.87578888889 5.99433333333 -0.0278757032298 0.54925189549 55169 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 27659 482370 chr10:117546684-117546764- NoOverlap chr10 117546684 117546764 - 2.90777035996 27 0.84942058103 -0.433918427538 3.3416887875 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117546683;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117546684-117546764-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117546684-117546764&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0855818094462 0.0893191173139 0.736366132462 119306195 119306275 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119306194;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117546684-117546764-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119306195-119306275&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RASVRSGLDTHTKTPGSVGSEADKDHR Same 484297 chr10:117546684-117546764- 27375 27375 284 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.691358024691 1.13793103448 -3.15706666667 0.982 -5.14991481481 1.99284814815 -0.0491284151692 0.502826633013 70726 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -12.6817185185 0.7643 -15.5573925926 2.87567407407 -0.0455401717709 0.495156886732 69052 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000442245.5,ENST00000546446.2 AntiCDSintron,AntiNCintron not annotated putative regulatory region 27676 524451 chr18:47594360-47594419+ NoOverlap chr18 47594360 47594419 + 3.37944000959 20 0.689204242008 -1.84548504353 5.22492505312 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;47594359;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47594360-47594419%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A47594360-47594419&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00409498451266 0.0891991753639 0.8870956847 45120731 45120790 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;45120730;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47594360-47594419%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A45120731-45120790&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AIKQQ*ERLRVIKWLTHRRSRYK Same 525887 chr18:47594360-47594419+ 29242 29242 -1566 4 9000 47594360 47602035 13245 13245;26978;27676;41264;47167;69881;72567 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:47594360-47602035&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.483333333333 0.606060606061 -1.469985 0.9644 -2.25016 0.780175 -0.0353407757399 0.371138610203 63900 6593 6593;11265;14639;28210;30783;58565;63900 -6.614295 0.8163 -10.453035 3.83874 -0.00974649668357 0.535560930754 40777 7430 7430;14557;25346;33451;40777;53603;69649 0.0 0.0 ENST00000586905.3 NC not annotated potentially spurious 27704 464267 chr1:29070358-29070390+ NoOverlap chr1 29070358 29070390 + 6.29660003294 11 0.900602731365 0.115918170322 6.18068186261 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;29070357;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A29070358-29070390%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A29070358-29070390&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.078684674304 0.0890056266443 0.873167430855 29396870 29396902 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;29396869;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A29070358-29070390%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A29396870-29396902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KQTQERALLVQDEEK Same 466124 chr1:29070358-29070390+ 26580 26580 1124 0 485 29069160 29070606 715 715;1266;27704 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:29069160-29070606&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.484848484848 0.52380952381 2.3085 0.9984 -4.06664545455 6.37514545455 0.0862357981135 0.76687212884 17473 1659 1659;1714;17473 2.51082727273 0.7313 -12.6797909091 15.1906181818 0.245619684637 0.911663611407 5276 791 791;1123;5276 0.0 0.0 ENST00000343067.8,ENST00000488277.1 CDSintron,NCintron coding exon(s) EPB41 alternative final exon 27845 561551 chr4:41881526-41881579- NoOverlap chr4 41881526 41881579 - 4.17642223835 18 0.715559963717 -0.515588760376 4.69201099873 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41881525;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41881526-41881579-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41881526-41881579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0659768565888 0.087932945838 0.81277432296 41883543 41883596 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41883542;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41881526-41881579-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41883543-41883596&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DPCSDPLPSPARAITKETRPPALPSPR Same 562542 chr4:41881526-41881579- 28653 28653 -808 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.703703703704 1.07386363636 2.14645555556 0.8938 -2.81928888889 4.96574444444 0.111933739857 0.726857312034 14687 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -1.68926666667 0.4928 -8.51886111111 6.82959444444 0.0807759686698 0.662317485303 13702 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0679084533767 chr12:6523262-6523346+ ENST00000498940.1,ENST00000499082.2 NC,NCintron not annotated putative regulatory region 27856 588645 chr9:23824294-23824338+ NoOverlap chr9 23824294 23824338 + 4.43006661733 15 0.898138907963 -1.39557992617 5.8256465435 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23824293;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23824294-23824338%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23824294-23824338&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0216355445162 0.0878681243965 0.895990114928 23824292 23824336 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23824291;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23824294-23824338%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23824292-23824336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WVRSNVLGIN*ATMATR Same 589591 chr9:23824294-23824338+ 27882 27882 -26 6 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 1.36363636364 -3.87182 0.9827 -6.89572 3.0239 -0.0475913769775 0.525046946195 70256 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -12.6117733333 0.4975 -13.8507666667 1.23899333333 -0.033071480158 0.366458672736 59821 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000380117.5,ENST00000462649.1 AntiUTR5intron,AntiNCintron not annotated putative regulatory region 27914 561544 chr4:41873995-41874021- NoOverlap chr4 41873995 41874021 - 7.64623340633 9 0.885801480125 0.87688876854 6.76934463779 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41873994;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41873995-41874021-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41873995-41874021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0823581848944 0.0874720524567 0.882562558479 41876012 41876038 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41876011;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41873995-41874021-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41876012-41876038&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIPSLEEDEGK Same 562535 chr4:41873995-41874021- 25801 25801 2113 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.592592592593 0.0 4.14868888889 0.998 2.58388888889 1.5648 0.0288795561418 0.336652559056 29140 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -15.1287888889 0.8974 -15.7389222222 0.610133333333 -0.0248001872433 0.290311385651 52324 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 not annotated putative regulatory region 27931 514871 chr16:72429285-72429311- NoOverlap chr16 72429285 72429311 - 8.00646670659 9 0.885982892941 1.8890109592 6.11745574739 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72429284;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72429285-72429311-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72429285-72429311&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.109928499618 0.0873864065608 0.816045824853 72463184 72463210 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72463183;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72429285-72429311-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72463184-72463210&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFIKNNSDICMCR Same 516521 chr16:72429285-72429311- 25767 25767 2164 0 5346 72425674 72429311 7419 7419;20359;21636;23849;24685;27931;29808;67419;67757;69819;71722 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425674-72429311&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.642857142857 -0.414411111111 1.0 -9.87646666667 9.46205555556 0.0157677904765 0.934463999775 34321 9185 9185;30001;30975;34321;44342;61179;63064;63782;69032;69981;73105 -3.39452222222 0.9363 -20.2197777778 16.8252555556 0.0597199744651 0.935573057153 16880 15117 15117;16880;44158;45925;52647;58331;62919;63425;64625;67483;67573 0.0 0.0 ENST00000561611.2,ENST00000564508.2 NCintron,AntiNC not annotated potentially spurious 27936 569175 chr5:140591663-140591701- NoOverlap chr5 140591663 140591701 - 6.32837669265 13 0.928171088849 3.09365402735 3.2347226653 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;140591662;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140591663-140591701-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A140591663-140591701&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.19167182133 0.0873581521464 0.559667710053 139971248 139971286 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;139971247;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A140591663-140591701-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A139971248-139971286&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQDLLSPGVENLSVLDVSPLGL*VFR Same 570188 chr5:140591663-140591701- 27834 27834 102 1 59 140590883 140594367 66 66;3111;5039;6920;27936 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:140590883-140594367&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.641025641026 0.52 10.6380307692 0.9789 3.80898461538 6.82904615385 0.49564679788 0.78884097064 3172 89 89;1580;2076;2463;3172 11.6123307692 0.3771 -0.223576923077 11.8359076923 0.289641622155 0.79353341979 4734 1915 1915;3790;4044;4161;4734 0.0 0.0 ENST00000510304.2,ENST00000507279.5 NC,NCintron pseudogene unitary pseudogene ENSG00000283602 27979 475499 chr1:204359938-204359982- NoOverlap chr1 204359938 204359982 - 5.3517266651 15 0.838297093156 1.68460659981 3.66712006529 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204359937;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204359938-204359982-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204359938-204359982&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.168121054432 0.0871166183929 0.651065915221 204329066 204329110 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204329065;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204359938-204359982-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204329066-204329110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESHVALKSPGEPMEHAQLPLPGK Same 477384 chr1:204359938-204359982- 26935 26935 1044 0 537 204359879 204378165 815 815;1426;2477;10157;27979;29433;67476 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204359879-204378165&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.688888888889 0.5625 -0.221346666667 0.9828 -2.81646666667 2.59512 -0.00311966691522 0.493182431732 43122 683 683;986;1894;9248;41567;43122;51633 -0.336753333333 0.4213 -6.25642666667 5.91967333333 0.0453564345172 0.602697149845 19689 208 208;1881;2415;9734;19689;34362;42976 0.0 0.0 ENST00000564627.1 NCintron not annotated putative regulatory region 28058 500297 chr13:99724077-99724160- NoOverlap chr13 99724077 99724160 - 2.86122858458 28 0.990839682176 -0.704003534147 3.56523211872 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;99724076;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A99724077-99724160-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A99724077-99724160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.054907235862 0.0865608215592 0.770603282204 100376331 100376414 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;100376330;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A99724077-99724160-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A100376331-100376414&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETLLFETQRNIPTTGHNCSLMHEWERDERKDGLLR Same 502310 chr13:99724077-99724160- 32212 32212 -4154 0 1155 99723905 99724160 1756 1756;8678;28058 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:99723905-99724160&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.464285714286 0.221052631579 0.245153571429 0.9984 -3.48619285714 3.73134642857 0.144530770789 0.692756872965 11947 2481 2481;7507;11947 -3.17856071429 0.9358 -6.697525 3.51896428571 0.0613331958941 0.580410250996 16588 3720 3720;8545;16588 0.0 0.0 ENST00000339105.8 AntiCDSintron not annotated putative regulatory region 28106 577710 chr7:27169456-27169536+ NoOverlap chr7 27169456 27169536 + 3.22388893587 27 0.862676715015 0.739981441586 2.48390749428 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27169455;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27169456-27169536%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27169456-27169536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.163389938624 0.0863204424143 0.625012868069 27209075 27209155 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27209074;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27169456-27169536%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27209075-27209155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DAPPGPTPARRGTWRRFQLK**RQCRAVERKVDPNNR Same 578749 chr7:27169456-27169536+ 27757 27757 349 13 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.506172839506 0.81 -2.56971481481 0.9919 -0.181355555556 -2.38835925926 -0.0727963381186 0.153876488083 73183 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -9.80878148148 0.6827 -4.68373703704 -5.12504444444 -0.0544521110413 0.214317733383 72704 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000519935.1,ENST00000519694.1,ENST00000489695.1,ENST00000470747.4,ENST00000465941.1 NC,NCintron,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 28138 505819 chr14:105737771-105737851- NoOverlap chr14 105737771 105737851 - 5.60861478912 27 0.284394824366 3.29830363062 2.3103111585 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105737770;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105737771-105737851-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105737771-105737851&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0373969363283 0.0860782021597 0.592357944558 106204108 106204188 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106204107;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105737771-105737851-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106204108-106204188&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQGCGLAHPCAVPCLQVKWIFSSVVDLKQTIIPDYRNMIGQGA None NA NA 0 546 105737771 105743011 829 829;1682;2080;6140;6600;28138 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105737771-105743011&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.543209876543 0.502066115702 12.298537037 0.6736 1.89241111111 10.4061259259 0.742044288654 1.04553143532 1915 5 5;31;57;114;876;1915 8.73314814815 0.4378 -8.90135555556 17.6345037037 0.728895205256 1.03936732407 2712 82 82;224;483;1691;2370;2712 0.0 0.105695396411 chr3:49124190-49124286- ENST00000390548.6,ENST00000618756.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 28171 527286 chr19:12782520-12782573+ NoOverlap chr19 12782520 12782573 + 6.57876117072 18 0.490992938464 5.05583333969 1.52292783103 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12782519;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12782520-12782573%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12782520-12782573&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.140362885046 0.085852874882 0.392120974614 12893334 12893387 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12893333;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12782520-12782573%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12893334-12893387&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPGGALPALRGRVRRA*RETRRGSLR Same 528732 chr19:12782520-12782573+ 28929 28929 -758 7 96 12775496 12806530 113 113;1182;3126;12882;12916;19147;21814;28171;30495;34266;70783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12775496-12806530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.759259259259 1.66153846154 -0.722905555556 0.9085 -3.36902222222 2.64611666667 -0.0106256469216 0.520915071985 47510 845 845;1545;3224;5434;8474;11177;11868;16562;28502;47510;67609 -1.66153888889 0.3949 -4.62671666667 2.96517777778 0.00917103574194 0.499849604459 31105 40 40;3058;6466;7449;7608;8225;15095;31105;55016;67420;71961 0.0 0.0 ENST00000589765.1 AntiNCintron not annotated putative regulatory region 28180 574597 chr6:34238107-34238196- NoOverlap chr6 34238107 34238196 - 3.76584997376 30 0.540102235447 1.42802671095 2.33782326281 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34238106;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34238107-34238196-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34238107-34238196&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0992164874231 0.0858061786036 0.625676320263 34205884 34205973 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34205883;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34238107-34238196-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34205884-34205973&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPTACTATRVHPAPLPARGGTQARLGAGNLARAGAGER Same 575629 chr6:34238107-34238196- 28998 28998 -818 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.788888888889 0.714285714286 -0.907206666667 0.8784 -3.20352 2.29631333333 0.00751540972815 0.565167219295 37883 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -3.30619333333 0.3666 -4.81366666667 1.50747333333 -0.00236398332301 0.502901411675 36549 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0 ENST00000311487.9,ENST00000478214.1 AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000186577 28188 467695 chr1:160262388-160262504+ NoOverlap chr1 160262388 160262504 + 2.59980001835 39 0.846694954546 0.705823074549 1.89397694381 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;160262387;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160262388-160262504%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A160262388-160262504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.17239818219 0.0857375150572 0.621947016127 160232178 160232294 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;160232177;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A160262388-160262504%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A160232178-160232294&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPSWVILLLAAAPTVPGPAAPSTATTNAAAILHWPAAATTTASALCACACAATLSGPVCDDVLEK Same 469561 chr1:160262388-160262504+ 28120 28120 68 0 695 160262310 160262658 1078 1078;1192;6610;14541;28188 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:160262310-160262658&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.726495726496 1.014 2.36818205128 0.9007 0.994215384615 1.37396666667 0.17203821225 0.547724948609 10173 3400 3400;4685;5491;10173;13442 2.25751025641 0.3122 0.525225641026 1.73228461538 0.08929273932 0.55567207238 12631 6373 6373;6638;7045;12631;15012 0.0 0.0 ENST00000442130.1,ENST00000326837.6,ENST00000461888.5,ENST00000485079.1 NC,AntiUTR5,AntiNC,AntiCDSintron not annotated putative regulatory region 28222 486542 chr11:125951827-125951910+ NoOverlap chr11 125951827 125951910 + 3.01884288394 28 0.796260449705 0.20892865743 2.80991422651 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125951826;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125951827-125951910%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125951827-125951910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.117877268559 0.0854591248163 0.675999835344 125821722 125821805 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125821721;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125951827-125951910%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125821722-125821805&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGTAKPFLLPQGHTEPSFLPGEPLGRPTCWSTATMGDQFIMLSCEWPGGEPPATLGWLDEQQQPLGGSSSSMAVHLLQAQEDLAGR Same 488504 chr11:125951827-125951910+ 28600 28600 -378 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.321428571429 5.64414642857 0.8874 -2.71862142857 8.36276785714 0.570201306187 1.01556762242 2716 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 19.1992535714 0.5501 -0.112925 19.3121785714 1.02193667812 1.03087105886 759 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0 ENST00000529072.1 NC protein-coding gene protein-coding gene ENSG00000283703 28290 490629 chr12:9497707-9497760+ NoOverlap chr12 9497707 9497760 + 3.99729451868 18 0.519620558989 -2.02871107393 6.02600559261 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9497706;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9497707-9497760%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9497707-9497760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00987997205402 0.0850870453244 0.937969218321 9650303 9650356 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9650302;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9497707-9497760%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9650303-9650356&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTLTSVIVLLLYSSIRYTYGEPVDGKVQLSVCR Same 492605 chr12:9497707-9497760+ 28230 28230 60 0 666 9480562 9518314 1023 1023;1860;2492;4418;4887;28290;30014;57029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9480562-9518314&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.352941176471 8.60814444444 0.6054 -2.11606666667 10.7242111111 0.366608194676 1.03089019101 4447 7 7;32;190;2502;3527;4447;12142;19347 19.4252555556 0.3861 -1.36912777778 20.7943833333 0.710028258949 1.02102427213 2774 4 4;8;122;2361;2406;2774;2953;4665 0.337506791009 chr12:31154333-31154450- 0.425554573531 chr12:31154333-31154450- ENST00000518709.5 NCintron pseudo-exon AC092821.1 pseudo exons 28404 557410 chr3:164021175-164021216- NoOverlap chr3 164021175 164021216 - 6.72697851062 14 0.271305409323 -5.06347147269 11.7904499833 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;164021174;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164021175-164021216-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A164021175-164021216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0047037077008 0.0843231876762 1.02627560666 163738963 163739004 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;163738962;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164021175-164021216-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A163738963-163739004&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EILTSLHQSFHIGGRPLYLLLHPYFSSPHLFTSVK Same 558379 chr3:164021175-164021216- 27630 27630 774 0 515 164020256 164021752 771 771;1003;8769;19116;25346;28404;49038 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:164020256-164021752&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.571428571429 0.705882352941 -3.23267142857 0.0218 -2.71898571429 -0.513685714286 0.0422420726491 0.240788376229 24940 19419 19419;24940;25790;26229;28407;40126;56143 -3.23267142857 0.0068 -2.71898571429 -0.513685714286 0.00687487666216 0.329436037613 32108 13932 13932;30001;32108;33417;45789;56644;69776 0.0 0.0 not annotated fragments of a reteroviral ORF 28622 564846 chr5:93602455-93602484+ NoOverlap chr5 93602455 93602484 + 6.44150987864 10 0.78387426566 -1.13863010406 7.5801399827 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;93602454;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93602455-93602484%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A93602455-93602484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0231149101976 0.0828836317157 0.967624394098 92938161 92938190 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;92938160;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93602455-93602484%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A92938161-92938190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPRATQGK*GRFLSIFLGWEPR Same 565834 chr5:93602455-93602484+ 28184 28184 438 3 3451 93580856 93603078 4787 4787;9346;11338;11696;13238;18999;26452;26493;26701;27232;28622;33341;37073;38483;40428;50861;66649 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:93580856-93603078&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 1.36363636364 -0.68011 0.9927 -7.00763 6.32752 -0.0157480942538 0.752353645329 51124 5022 5022;8932;13700;14826;16126;17841;21763;24145;29213;36125;41771;51124;51917;55188;59615;61664;73562 -8.18929 0.4906 -21.55008 13.36079 0.00428101219463 0.813579643645 33273 5814 5814;6596;9096;16343;18747;24073;27385;33273;39453;40451;41327;42891;44550;46827;53732;65452;67088 0.0 0.0 ENST00000623223.1 NC not annotated potentially spurious 28811 570724 chr6:22149922-22149960+ NoOverlap chr6 22149922 22149960 + 5.65917690901 13 0.83990234226 0.651330782817 5.00784612619 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;22149921;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A22149922-22149960%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A22149922-22149960&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.11187153959 0.0817564538808 0.784640513613 22150151 22150189 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;22150150;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A22149922-22149960%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A22150151-22150189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDSMSLCHQAIEVIMGQGRQTGQWGY Same 571748 chr6:22149922-22149960+ 27499 27499 1312 0 16540 22149922 22149960 Best 28811 28811 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:22149922-22149960&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.589743589744 0.433333333333 2.6342 0.9783 -0.395707692308 3.02990769231 0.057392434017 0.510468323242 21685 Best 21685 21685 -4.95373076923 0.7682 -3.91880769231 -1.03492307692 -0.0422116063831 0.301063315394 66808 Best 66808 66808 0.0 0.0 ENST00000605917.1,ENST00000444265.6 NC,NCintron not annotated potentially spurious 28812 486457 chr11:123591518-123591550+ NoOverlap chr11 123591518 123591550 + 6.53942737254 11 0.773026210838 0.461863653226 6.07756371932 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;123591517;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A123591518-123591550%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A123591518-123591550&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0846334330701 0.0817487216923 0.860624097846 123462226 123462258 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;123462225;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A123591518-123591550%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A123462226-123462258&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CWHGSEEIPAVSV Same 488419 chr11:123591518-123591550+ 28262 28262 550 0 639 123591392 123591550 983 983;28812 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:123591392-123591550&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575757575758 0.75 7.57159090909 0.9866 2.63350909091 4.93808181818 0.256592162483 0.634683555834 6766 838 838;6766 5.46556363636 0.5947 4.71103636364 0.754527272727 0.0400371011469 0.350502368567 21023 870 870;21023 0.0 0.0 ENST00000322282.11,ENST00000532581.5 CDSintron,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 28942 586878 chr8:64368897-64368947- NoOverlap chr8 64368897 64368947 - 4.804270562 17 0.930800335698 1.50567057904 3.29859998296 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;64368896;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64368897-64368947-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A64368897-64368947&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.164525965487 0.0808385300884 0.631183563726 65281454 65281504 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;65281453;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64368897-64368947-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A65281454-65281504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RSAGCVRVSAWGPGPKAPFSACHNKPAQGLVLTGSPAILYYSTLHNK Same 587819 chr8:64368897-64368947- 29410 29410 -468 0 5341 64368369 64380096 7413 7413;23157;28942;34300;70170;70979;72036 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:64368369-64380096&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.705882352941 0.809523809524 2.45158235294 0.9792 2.54087647059 -0.0892941176471 0.0409657136216 0.279069318505 25300 9455 9455;23665;25300;33558;51744;54451;62241 -2.89123529412 0.8991 -3.08375294118 0.192517647059 -0.0151132567607 0.377342802176 44391 29002 29002;44391;44674;45945;47356;48925;63213 0.0 0.0 not annotated potentially spurious 28990 476949 chr10:23173215-23173259+ NoOverlap chr10 23173215 23173259 + 5.61249330441 15 0.867024745047 3.17396005268 2.43853325173 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;23173214;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23173215-23173259%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A23173215-23173259&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.208789925117 0.0805586728822 0.487720117254 23462144 23462188 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;23462143;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23173215-23173259%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A23462144-23462188&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FDLPGNLQSDRTSFIMFIEHFA Same 478844 chr10:23173215-23173259+ 28041 28041 949 0 873 23173215 23174753 1346 1346;12304;15950;27589;28990;57664;61491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:23173215-23174753&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 1.36363636364 2.59042 0.9943 0.854773333333 1.73564666667 0.0686722786141 0.416227444128 19886 13233 13233;19886;24016;28278;48646;49514;73112 -1.63531333333 0.6136 -3.68771333333 2.0524 0.00294609118225 0.44019964149 33897 17548 17548;26780;29885;33897;60100;60114;62222 0.0 0.0 not annotated putative regulatory region 29061 469676 chr1:248692176-248692208+ NoOverlap chr1 248692176 248692208 + 7.66098186103 11 0.394258446215 0.205218065869 7.45576379516 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;248692175;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A248692176-248692208%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A248692176-248692208&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0114743991129 0.0800156012761 0.953978283907 248855477 248855509 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;248855476;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A248692176-248692208%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A248855477-248855509&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLACSLTFMPFFTGER Same 471557 chr1:248692176-248692208+ 28859 28859 202 0 3711 248692176 248697161 5148 5148;29061 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:248692176-248697161&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575757575758 0.0 8.4056 0.4178 -1.15344545455 9.55904545455 0.0727130999033 0.942975704052 19279 15417 15417;19279 9.21237272727 0.2879 -0.998090909091 10.2104636364 0.115465265643 0.723713965851 10188 Best 10188 10188;21660 0.0 0.0 ENST00000611154.1 NC pseudogene unitary pseudogene ENSG00000229703 29069 490388 chr12:3199732-3199782+ NoOverlap chr12 3199732 3199782 + 5.82877056388 17 0.648687948514 4.14618831172 1.68258225217 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3199731;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3199732-3199782%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3199732-3199782&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.190252669298 0.0799429639426 0.408123020246 3308898 3308948 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3308897;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3199732-3199782%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3308898-3308948&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVCAPVRARRGGGEGGAHPAEAPGAFR Same 492364 chr12:3199732-3199782+ 29169 29169 -100 0 350 3199732 3201193 479 479;12827;29069;61461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3199732-3201193&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.882352941176 0.918 1.05948235294 0.7887 -3.11615294118 4.17563529412 0.0315013142963 0.649737442463 28137 294 294;9159;28137;48160 -2.94042941176 0.3965 -7.51976470588 4.57933529412 0.0104502945979 0.558353667332 30575 506 506;13691;30575;61204 0.0 0.214484321285 chr17:40126183-40126406+ ENST00000011898.9,ENST00000444315.6 UTR5intron,NCintron coding exon(s) TSPAN9 alternative 5' exon 29079 478908 chr10:113125570-113125617+ NoOverlap chr10 113125570 113125617 + 3.86965619028 16 0.8807059205 -2.13711880893 6.0067749992 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113125569;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125570-113125617%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113125570-113125617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0326310243998 0.079881016137 0.922494801102 114885329 114885376 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114885328;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125570-113125617%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114885329-114885376&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NNCVLNLVPDG*LGVQQRAGSNDKYNINIH Same 480809 chr10:113125570-113125617+ 29001 29001 78 3 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.541666666667 0.857142857143 0.4262375 0.9875 -1.141775 1.5680125 0.0069163975472 0.412466118723 38152 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -0.03688125 0.9231 -1.8626875 1.82580625 0.0270796415668 0.439141870061 24668 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 29159 476451 chr1:244049244-244049453- NoOverlap chr1 244049244 244049453 - 3.63485286438 70 0.20587036371 3.25932429518 0.3755285692 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244049243;210;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244049244-244049453-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244049244-244049453&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.115006607442 0.0793712154735 0.498131581471 244212546 244212755 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244212545;210;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244049244-244049453-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244212546-244212755&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APSPAGPLPRAPLQLHRSPEPRPSRAPLQLRLLPSPLPQPAALRTREAPPQLHRPGARPAPQLHRPAGARRGAGNPHPARPR Same 478345 chr1:244049244-244049453- 30820 30820 -1661 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.838095238095 0.877358490566 1.40182571429 0.2641 1.67752571429 -0.2757 0.0233821107324 0.420190139025 31250 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -5.52341285714 0.4105 -6.09557714286 0.572164285714 0.0148682722806 0.521009069314 28780 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0678657379565 chr5:157743751-157744198+ ENST00000622512.1 AntiUTR5intron not annotated putative regulatory region 29209 548043 chr22:20703645-20703695+ NoOverlap chr22 20703645 20703695 + 5.68642934631 17 0.459098191806 1.90727646386 3.77915288245 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;20703644;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20703645-20703695%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A20703645-20703695&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0525361697808 0.0790810702845 0.683847631274 21057933 21057983 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21057932;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20703645-20703695%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21057933-21057983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ACRPAPAESNPGVHTQDALQTAEAWAIFQEQTVVLQVRPHSDAK Same 549463 chr22:20703645-20703695+ 29881 29881 -672 0 1508 20702136 20704490 2244 2244;3957;4169;8406;12453;12907;29209;29720;35559;56010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:20702136-20704490&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.627450980392 0.404761904762 13.5202823529 0.7809 -0.300511764706 13.8207941176 0.605444085378 1.04308085788 2520 130 130;847;1263;1735;2520;3116;3637;4021;20091;38948 8.81898235294 0.5376 -10.2305470588 19.0495294118 0.601010488118 1.02605187979 3161 1022 1022;2706;2800;2896;3161;3297;5293;6158;8692;8932 0.524804706604 chr22:18529606-18529724+ 0.898974332534 chr22:18529606-18529724+ ENST00000414022.5 NC pseudogene transmembrane protein 191A pseudogene (ENSG00000226287) 29221 530787 chr19:31962598-31962678- NoOverlap chr19 31962598 31962678 - 3.2061481807 27 0.913627154277 0.755325911222 2.45082226948 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;31962597;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A31962598-31962678-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A31962598-31962678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.154498261325 0.0789805487162 0.620701553656 32453504 32453584 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;32453503;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A31962598-31962678-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A32453504-32453584&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HCEMNVLTGHCVSSCHSVMVTYFSWIEVVLVGGGLGK Same 532250 chr19:31962598-31962678- 29091 29091 130 0 1495 31961652 31966868 2226 2226;24190;29221;31471 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:31961652-31966868&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.294545454545 0.630055555556 0.9995 -0.182985185185 0.813040740741 0.0635437430094 0.423143620533 20668 4902 4902;20668;24363;57262 -1.77648148148 0.7784 -1.89997777778 0.123496296296 0.0272490769248 0.433470578789 24608 8446 8446;24608;25248;31804 0.0 0.0 not annotated potentially spurious 29276 485913 chr11:111448458-111448505+ NoOverlap chr11 111448458 111448505 + 4.32690003328 16 0.772396429389 -0.963343751617 5.2902437849 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111448457;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111448458-111448505%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111448458-111448505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0422584277768 0.0786494199738 0.855571142142 111319183 111319230 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111319182;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111448458-111448505%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111319183-111319230&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLHGCPPTGSLCPNSPPAPCPPGTFLSGAGPHNASFCHLCPPR Same 487871 chr11:111448458-111448505+ 29200 29200 76 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.604166666667 0.311688311688 7.69400625 0.9182 -0.2083125 7.90231875 0.405484658216 0.906361406121 3947 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 27.6731875 0.5999 11.506275 16.1669125 0.894981485804 0.884121028361 2128 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000531398.1,ENST00000525890.1 AntiUTR5intron,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 29291 507871 chr15:95931143-95931169+ NoOverlap chr15 95931143 95931169 + 8.47709992197 9 0.809002822919 3.50940002667 4.9676998953 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;95931142;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95931143-95931169%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A95931143-95931169&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.128381620252 0.0785236038259 0.680962393708 96474372 96474398 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;96474371;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95931143-95931169%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A96474372-96474398&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGVWGQPGSWDQPLDLEVQQLCVVFEAEDQAENMR Same 509602 chr15:95931143-95931169+ 27763 27763 1528 0 724 95929520 95940999 1117 1117;29291;60545 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:95929520-95940999&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.0 6.79871111111 1.0 3.58298888889 3.21572222222 0.144294590263 0.464164553538 11963 10418 10418;11963;40919 2.54335555556 0.8742 -1.20147777778 3.74483333333 0.03245685935 0.458271350119 23021 13463 13463;23021;52225 0.0 0.0 not annotated putative regulatory region 29405 482359 chr10:117543188-117543226- NoOverlap chr10 117543188 117543226 - 5.81961542597 13 0.829796174681 1.30007698903 4.51953843694 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117543187;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117543188-117543226-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117543188-117543226&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.130078951605 0.0777189216409 0.727177437647 119302699 119302737 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119302698;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117543188-117543226-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119302699-119302737&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APWAPSSWRPPHAASAARCPR Same 484286 chr10:117543188-117543226- 28097 28097 1308 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.871794871795 1.32954545455 -5.34004615385 0.8997 -10.8115153846 5.47146923077 -0.0232661767903 0.700999120152 56350 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -13.6092384615 0.6205 -18.9474 5.33816153846 -0.0389125808045 0.495644113662 64433 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000551288.5,ENST00000442245.5 NCintron,AntiUTR5 not annotated putative regulatory region 29433 475498 chr1:204359879-204359944- NoOverlap chr1 204359879 204359944 - 3.59770901095 22 0.834307136367 0.336045418273 3.26166359267 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204359878;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204359879-204359944-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204359879-204359944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.120174988547 0.0775298930193 0.683443057164 204329007 204329072 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204329006;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204359879-204359944-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204329007-204329072&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPEIPGGADGACPAASAWERCWILQ*PQQHPLPAPGTCQPER Same 477383 chr1:204359879-204359944- 29023 29023 410 7 537 204359879 204378165 815 815;1426;2477;10157;27979;29433;67476 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204359879-204378165&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575757575758 0.0 2.48203181818 0.9861 -1.02072727273 3.50275909091 0.189593290045 0.637291677829 9248 683 683;986;1894;9248;41567;43122;51633 2.80494545455 0.4166 -1.30498181818 4.10992727273 0.121415671005 0.578050138104 9734 208 208;1881;2415;9734;19689;34362;42976 0.0 0.0 ENST00000272203.7,ENST00000564627.1 UTR5,NCintron not annotated putative regulatory region 29524 584687 chr8:78645445-78645585+ NoOverlap chr8 78645445 78645585 + 2.10921066746 47 0.223039824424 -3.0831787656 5.19238943305 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78645444;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78645445-78645585%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78645445-78645585&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00814435447682 0.0770025051916 1.00675387668 79557680 79557820 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79557679;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78645445-78645585%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79557680-79557820&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MVYIHPLLGMVEALGNGYEMILHDWKTLVKVLVSAAEYTV*WSEYSDLAMQQSLQNLDNNIPIQLDMLLGTGPFALAQAQVHSHLFPQCSQLVIQAWK Same 585618 chr8:78645445-78645585+ 24712 24712 4812 13 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.432624113475 0.176691729323 -0.418370212766 0.0306 -1.26046808511 0.84209787234 0.0178702894171 0.490862410132 33442 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 -0.563 0.1394 -9.03483617021 8.47183617021 0.0763443974324 0.85145282096 14289 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 29532 478484 chr10:100879886-100879924+ NoOverlap chr10 100879886 100879924 + 6.29983841914 13 0.944242360219 3.29371522023 3.00612319891 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100879885;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100879886-100879924%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100879886-100879924&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.183332367563 0.0769546974039 0.530121664151 102639643 102639681 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102639642;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100879886-100879924%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102639643-102639681&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPLGPGPHPSPSWWLQPSLVDQLSPAAGSAEGAR Same 480379 chr10:100879886-100879924+ 29928 29928 -396 0 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.692307692308 0.428571428571 5.73583846154 1.0 2.63769230769 3.09814615385 0.196226068795 0.506834358331 8935 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 2.66394615385 0.3752 -0.626023076923 3.28996923077 0.0216127230155 0.47507815033 26440 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 29639 506369 chr15:40323786-40323944+ NoOverlap chr15 40323786 40323944 + 3.75043772512 53 0.473842437643 3.11767165841 0.632766066717 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;40323785;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323786-40323944%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A40323786-40323944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.203227662498 0.0762582008131 0.506123439359 40615987 40616145 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;40615986;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323786-40323944%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A40615987-40616145&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAVAAVAAVAVAAAGKQLTGRRRRRRWRR*LVQAPAAAAATRWRAAGGRREERRRSAGPPGTEGAGPPPAQSLQAARPPPAGAVEHR Same 508080 chr15:40323786-40323944+ 29061 29061 578 26 1677 40313687 40324514 2488 2488;29639;48301;50245;50817;59923;62142;66647;67529;68396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:40313687-40324514&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.830188679245 1.13716475096 2.59463207547 0.413 0.717156603774 1.8774754717 0.0848012523826 0.639820103828 17663 2234 2234;17663;29719;32124;51811;55466;56351;56933;64873;66727 -5.50276603774 0.4195 -4.16375283019 -1.33901320755 -0.0206370434152 0.432230605449 48619 2097 2097;14593;22796;39510;43273;44464;48619;53899;64626;73766 0.0 0.121996977425 chr3:8767266-8768187- not annotated putative regulatory region 29705 577659 chr7:27142045-27142092+ NoOverlap chr7 27142045 27142092 + 4.04552492127 16 0.774063477531 -1.7037313804 5.74925630167 ENST00000222726.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27142044;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27142045-27142092%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27142045-27142092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000226783993076 0.0758843438521 0.899922151163 27181664 27181711 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27181663;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27142045-27142092%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27181664-27181711&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGRPGPFAFRAAYVVCNR Same 578698 chr7:27142045-27142092+ 29717 29717 -12 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.645833333333 0.806722689076 -0.2609 0.9909 -5.80968125 5.54878125 0.0607703969353 0.749972095282 21117 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -18.08969375 0.9643 -28.8582875 10.76859375 -0.0354481530647 0.643369678536 61819 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222726.3,ENST00000520854.1,ENST00000467897.2 NCintron,AntiCDS,AntiNC,AntiNCintron not annotated putative regulatory region 29720 548045 chr22:20704002-20704046+ NoOverlap chr22 20704002 20704046 + 7.36528657277 15 0.45646245009 5.67742010156 1.68786647121 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;20704001;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20704002-20704046%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A20704002-20704046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.10131627647 0.0758006020814 0.371103126896 21058290 21058334 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21058289;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20704002-20704046%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21058290-21058334&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VQYSTESLMEEMARADRVSACAGPGGVGWSGTPLPIPPAVPPPPPPGNR Same 549465 chr22:20704002-20704046+ 31510 31510 -1790 0 1508 20702136 20704490 2244 2244;3957;4169;8406;12453;12907;29209;29720;35559;56010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:20702136-20704490&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.861244019139 11.92144 0.7649 3.43370666667 8.48773333333 0.399146980727 0.906871003253 4021 130 130;847;1263;1735;2520;3116;3637;4021;20091;38948 9.11075333333 0.5045 2.81582 6.29493333333 0.244899612623 0.605125468579 5293 1022 1022;2706;2800;2896;3161;3297;5293;6158;8692;8932 0.468815368673 chr22:18529936-18530008+ 0.560359921151 chr22:18529936-18530008+ ENST00000422715.1 NC pseudogene transmembrane protein 191A pseudogene (ENSG00000226287) 29808 514870 chr16:72428246-72428278- NoOverlap chr16 72428246 72428278 - 5.52994543314 11 0.864513757395 -1.58805447275 7.11799990589 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72428245;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72428246-72428278-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72428246-72428278&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0109595220142 0.0752471386654 0.954693204827 72462145 72462177 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72462144;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72428246-72428278-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72462145-72462177&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YTALQELEESK Same 516520 chr16:72428246-72428278- 28448 28448 1360 0 5346 72425674 72429311 7419 7419;20359;21636;23849;24685;27931;29808;67419;67757;69819;71722 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425674-72429311&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.424242424242 0.0 1.72894545455 0.9997 0.881881818182 0.847063636364 -0.00536277410715 0.307366706525 44342 9185 9185;30001;30975;34321;44342;61179;63064;63782;69032;69981;73105 -11.1457181818 0.7034 -13.0494090909 1.90369090909 -0.0431111093788 0.37459049767 67483 15117 15117;16880;44158;45925;52647;58331;62919;63425;64625;67483;67573 0.0 0.0 ENST00000561611.2,ENST00000564508.2 NCintron,AntiNC not annotated potentially spurious 29825 529348 chr19:58581703-58581729+ NoOverlap chr19 58581703 58581729 + 8.69464444452 9 0.466349618101 -10.7196110491 19.4142554936 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;58581702;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58581703-58581729%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A58581703-58581729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0281962708258 0.0751051531601 0.968470623384 59093070 59093096 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;59093069;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58581703-58581729%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A59093070-59093096&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NMPLSVVLIREKAHSPFENR Same 530807 chr19:58581703-58581729+ 21081 21081 8744 0 462 58578105 58581980 664 664;10695;22905;23620;29825;45792 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:58578105-58581980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.771428571429 22.5832666667 0.4864 -10.6464666667 33.2297333333 0.223512661044 0.967894204537 7858 12 12;3572;4861;7429;7858;42404 31.3837555556 0.5087 -15.7111888889 47.0949444444 0.636632902043 0.987928785783 3032 2070 2070;2199;2636;3032;3216;7342 0.0 0.265829855916 chr16:89971359-89971922- ENST00000493504.1,ENST00000473164.1 NC,NCintron pseudogene CENPBD1P1 CENPB DNA-binding domains containing 1 pseudogene 1 (ENSG00000285138) 29832 491310 chr12:49024063-49024134+ NoOverlap chr12 49024063 49024134 + 2.70265434931 24 0.907896543832 -1.94487494603 4.64752929534 ENST00000526209.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;49024062;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49024063-49024134%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A49024063-49024134&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0402185214724 0.0750676625338 0.862523691352 49417846 49417917 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49417845;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49024063-49024134%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49417846-49417917&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCCEDQMR*WM*KRFEKKSIKCYTNVR Same 493287 chr12:49024063-49024134+ 30651 30651 -819 11 27 49020566 49033910 27 27;1869;2293;3141;4665;5179;14171;29832;59889;70464 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:49020566-49033910&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.291666666667 0.9 -0.434695833333 0.9997 -1.71435833333 1.2796625 0.0195776661546 0.442184697785 32787 391 391;2014;2802;4299;4455;6825;32787;42176;48473;48787 -0.839170833333 0.3489 -2.10352083333 1.26435 0.00826713714644 0.467100349182 31483 2210 2210;2935;3946;7899;19234;24986;25843;31483;36637;57651 0.0 0.0 ENST00000526209.1,ENST00000301067.11 AntiCDS,AntiCDSintron not annotated potentially spurious 29906 540171 chr2:132669111-132669137- NoOverlap chr2 132669111 132669137 - 6.8880554835 9 0.617266431 -3.44776671463 10.3358221981 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;132669110;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A132669111-132669137-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A132669111-132669137&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.024227013274 0.0745887655324 1.04326096022 133426684 133426710 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;133426683;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A132669111-132669137-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A133426684-133426710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRPRRRAADPGSGTCGAAALGVWHLHPSCSQVVAQGSSEPWHR Same 541533 chr2:132669111-132669137- 30982 30982 -1076 0 268 132668677 132673137 349 349;4819;25599;29906;42467 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:132668677-132673137&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.851851851852 0.818181818182 2.0463 0.6764 -6.73027777778 8.77657777778 0.0174747836906 0.901009505009 33618 117 117;11448;18835;33618;70710 -7.68502222222 0.3384 -11.0575444444 3.37252222222 -0.0212969922688 0.432850969713 49163 183 183;28002;37490;38224;49163 0.0 0.0 ENST00000397463.2,ENST00000345008.6,ENST00000449209.1 CDSintron,UTR5intron,NCintron coding exon(s) NCKAP5 alternative final exon 30014 490630 chr12:9503064-9503144+ NoOverlap chr12 9503064 9503144 + 2.69262223774 27 0.29084317399 -3.91795928169 6.61058151943 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;9503063;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9503064-9503144%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A9503064-9503144&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00654837020777 0.0739053066829 1.02570915972 9655660 9655740 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;9655659;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A9503064-9503144%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A9655660-9655740&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YIYIDSSVVKISFENMDMSYKQGLPYFGQVR Same 492606 chr12:9503064-9503144+ 26214 26214 3800 0 666 9480562 9518314 1023 1023;1860;2492;4418;4887;28290;30014;57029 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:9480562-9518314&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.395061728395 0.0 2.33548888889 0.4157 -7.79093333333 10.1264222222 0.141827725176 1.07241616809 12142 7 7;32;190;2502;3527;4447;12142;19347 6.51864814815 0.3311 -14.2237259259 20.7423740741 0.66385813096 1.08274920432 2953 4 4;8;122;2361;2406;2774;2953;4665 0.32564295673 chr12:31149315-31149424- 0.463822539836 chr12:31149315-31149424- ENST00000518709.5 NCintron pseudo-exon AC092821.1 pseudo exons 30056 509510 chr15:75228852-75228920- NoOverlap chr15 75228852 75228920 - 3.25206083318 23 0.452345742899 -1.76150433395 5.01356516714 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;75228851;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A75228852-75228920-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A75228852-75228920&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.010337206647 0.0736761714973 0.889439063562 75521193 75521261 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;75521192;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A75228852-75228920-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A75521193-75521261&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSSQARPDLQGFPQVTPVVSGFYKASPQERPLLLFR Same 511241 chr15:75228852-75228920- 29076 29076 980 0 13552 75228852 75229646 22059 22059;30056 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:75228852-75229646&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.623188405797 0.302631578947 2.51621304348 0.7078 -8.03771304348 10.553926087 0.319006844594 1.06540557804 5222 Best 5222 5222;9959 3.23233913043 0.3029 -7.19083478261 10.423173913 0.231166096403 0.839867484798 5529 Best 5529 5529;11714 0.0 0.0 ENST00000563803.1 NC pseudogene unitary pseuodgene ENSG00000260660 30067 462839 chr1:1042143-1042172+ NoOverlap chr1 1042143 1042172 + 7.73805001378 10 0.725645838102 2.59286987782 5.14518013597 ENST00000379370.6,ENST00000620552.4 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;1042142;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A1042143-1042172%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A1042143-1042172&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.109642764195 0.0736042181702 0.731999546667 977523 977552 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;977522;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A1042143-1042172%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A977523-977552&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPAAACHPQQAPGPVW*APR Same 464703 chr1:1042143-1042172+ 30105 30105 -38 2 44 1034466 1042172 50 50;19942;30067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:1034466-1042172&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.495867768595 1.37973 0.8914 -1.50885 2.88858 -0.0305910781584 0.470363216834 60896 526 526;33141;60896 -25.98691 0.8133 -31.72375 5.73684 0.0204471193322 0.310120426527 26835 1035 1035;20095;26835 0.0 0.00211615866517 chrX:49176903-49177202- ENST00000379370.6 CDS coding exon(s) AGRN intronic alternative START 30074 500665 chr14:21846938-21846982+ NoOverlap chr14 21846938 21846982 + 4.91499985059 15 0.547096971084 -1.23448007902 6.14947992961 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21846937;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21846938-21846982%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21846938-21846982&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0180043980349 0.0735672193375 0.919971370738 22315120 22315164 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22315119;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21846938-21846982%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22315120-22315164&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQSVTQLDSHVSVSEGTPVLLR None NA NA 0 130 21846938 21869364 157 157;319;1640;6119;15880;30074 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21846938-21869364&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.511363636364 12.45632 0.7826 -7.75098666667 20.2073066667 0.560438629761 0.970769175457 2765 19 19;1154;2028;2765;4576;5725 15.6794666667 0.4479 -13.62374 29.3032066667 0.682715255314 1.0482554249 2871 746 746;1536;2871;3379;4344;4897 0.0 0.0 ENST00000390434.3 NC immunoglobulin segment overlaps an immunoglobulin region 30161 543319 chr20:36205843-36205878+ NoOverlap chr20 36205843 36205878 + 5.71284168462 12 0.817204547189 -0.204425111413 5.91726679603 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;36205842;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36205843-36205878%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A36205843-36205878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0625109940555 0.0730494242115 0.865917400119 34793765 34793800 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;34793764;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A36205843-36205878%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A34793765-34793800&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YFMLTLLAPIETQGSEHWVFIER Same 544708 chr20:36205843-36205878+ 28974 28974 1187 0 105 36205843 36208375 125 125;723;906;1185;1244;1425;3209;4167;4835;30161 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:36205843-36208375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.388888888889 0.0 6.03505 0.9652 2.04478333333 3.99026666667 0.169508705764 0.572913197449 10311 172 172;398;1291;1366;1423;1562;1733;1995;6918;10311 11.9731666667 0.7664 6.04896666667 5.9242 0.312050736068 0.552153628268 4506 1508 1508;2023;2148;2169;2610;3152;3488;3607;4506;5668 0.0 0.0 ENST00000202028.9 CDSintron coding exon(s) EPB41L1 three consectutive cassette exons 30239 548219 chr22:25111740-25111781+ NoOverlap chr22 25111740 25111781 + 4.0150000304 14 0.687840739409 -3.39392870665 7.40892873704 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;25111739;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25111740-25111781%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A25111740-25111781&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0706430651065 0.0726189948704 0.999783929407 25507707 25507748 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;25507706;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A25111740-25111781%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A25507707-25507748&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSEDEGAQRPPPPPPPPSPSPAFR Same 549587 chr22:25111740-25111781+ 31470 31470 -1231 0 222 25111740 25112471 278 278;30239 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:25111740-25112471&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.761904761905 0.269230769231 0.0498285714286 0.5135 -1.85302857143 1.90285714286 -0.0243405087263 0.425042615939 57052 705 705;57052 -1.15830714286 0.215 -3.08717142857 1.92886428571 -0.0196008669362 0.427958906574 47776 261 261;47776 0.0 0.0 ENST00000358431.7,ENST00000494730.2,ENST00000366110.4 CDSintron,NCintron,AntiNCintron coding exon(s) KIAA1671 5' coding exon 30258 539485 chr2:88818310-88818414- NoOverlap chr2 88818310 88818414 - 4.11465716362 35 0.229410674776 1.12453140276 2.99012576086 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;88818309;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88818310-88818414-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A88818310-88818414&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0191942444447 0.0725362234881 0.74350899709 89117824 89117928 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;89117823;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88818310-88818414-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A89117824-89117928&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSFFYAFIFQIFGFWVWILVATTQVANPLLQGWVMYVSLTLFLISLVFLLSSLFGFESWR Same 540863 chr2:88818310-88818414- 30344 30344 -86 0 13661 88811636 88818414 22295 22295;30258;34396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:88811636-88818414&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52380952381 0.0 4.09961428571 0.2771 0.461325714286 3.63828857143 0.0881505552429 0.744149169052 17244 9685 9685;15690;17244 20.4111457143 0.3854 3.46776 16.9433857143 1.02634856764 1.00772261444 677 Best 677 677;2655;3050 0.911907296613 chr2:110091603-110091770- 0.792555039906 chr2:110091603-110091770- ENST00000434790.1 NC pseudogene mal, T-cell differentiation protein-like (MALL) unprocessed pseudogene (ENSG00000283270) 30266 679676 chr2:131382613-131382642- Extension chr2 131382613 131382642 - 0.556730002165 10 0.240534065766 -1.34468996227 1.90141996443 chr2:131382613-131382969- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131382612;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131382613-131382642-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131382613-131382642&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.18859011145 0.0724802490439 0.44427490135 132140186 132140215 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;132140185;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131382613-131382642-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A132140186-132140215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") *VKKEGIEPPR Same 680263 chr2:131382613-131382642- 28785 28785 1481 1 643 131370351 131386316 988 988;1634;5892;16115;21323;24702;26053;30266;32713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131370351-131386316&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.535714285714 -4.10124 0.6337 -8.01073 3.90949 -0.00842706256944 0.563914373609 46168 1235 1235;1643;1841;2007;2369;2922;4039;4272;46168 -1.9627 0.8353 -11.31864 9.35594 0.0320539225 0.696918415915 23136 939 939;1359;1734;1945;2052;2301;2444;3194;23136 0.144539911201 chrM:5904-7445+ 0.120917185164 chrM:5904-7445+ pseudogene extension mitochondrial pseudogene region extended (e.g. ENSG00000284003) 30313 522311 chr17:50751360-50751404- NoOverlap chr17 50751360 50751404 - 4.28792665799 15 0.929771877623 -1.612133346 5.900060004 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;50751359;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A50751360-50751404-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A50751360-50751404&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0136457720356 0.0721440806331 0.90337144416 48828721 48828765 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;48828720;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A50751360-50751404-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A48828721-48828765&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSNMDVGRERSTWHEYLLSLTESLIFNLAFHGPLTTPTLCEVW Same 523739 chr17:50751360-50751404- 31699 31699 -1386 0 11440 50750924 50761416 17729 17729;20331;30313;39578;68410 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:50750924-50761416&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.488888888889 0.0 0.502626666667 0.9596 -0.53594 1.03856666667 -0.0114953309659 0.359373558607 48115 2260 2260;17611;40644;48115;53652 -2.04994666667 0.9195 -3.75218 1.70223333333 -0.00321045043984 0.425466834697 37013 607 607;33223;37013;53407;69870 0.0 0.0 ENST00000393227.6,ENST00000503798.1,ENST00000513969.5,ENST00000240304.5 AntiUTR3,AntiNC,AntiCDSintron,AntiUTR3intron protein-coding gene protein-coding gene ENSG00000167117; found after examing lncRNAs for coding potential 30339 540702 chr2:161266087-161266164- NoOverlap chr2 161266087 161266164 - 3.60108077068 26 0.838983279633 2.1747115839 1.42636918678 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;161266086;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A161266087-161266164-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A161266087-161266164&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.224210501531 0.0720128600243 0.472760221162 162122598 162122675 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;162122597;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A161266087-161266164-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A162122598-162122675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPQTASHTIIPACVYIFSSPDRDPIQCTQSECSCTRAHPPSGGLK Same 542068 chr2:161266087-161266164- 30272 30272 67 0 12128 161266080 161266178 19080 19080;30339 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:161266080-161266178&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.551282051282 1.23529411765 -1.14046153846 0.9997 -1.46699615385 0.326534615385 -0.0174335512242 0.365996545901 52342 23932 23932;52342 -4.28437692308 0.5491 -4.77880769231 0.494430769231 -0.00842841832217 0.438548991403 39998 18077 18077;39998 0.0 0.0 ENST00000435692.6,ENST00000628617.2 NC,NCintron not annotated potentially spurious 30341 490586 chr12:7621464-7621520+ NoOverlap chr12 7621464 7621520 + 4.80682098866 19 0.236780667622 -2.83410524538 7.64092623403 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;7621463;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7621464-7621520%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A7621464-7621520&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00655491683939 0.0720013256119 1.03110550046 7774060 7774116 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;7774059;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7621464-7621520%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A7774060-7774116&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HNLNTTMFDPTKRGHLILYQCFFLIFSLTEVYILILFR Same 492562 chr12:7621464-7621520+ 29660 29660 681 0 1000 7620539 7637633 1528 1528;3369;23912;30341;31797;32931;38172;38567;44054;46877;50926 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:7620539-7637633&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.280701754386 0.0 -0.904415789474 0.0826 -5.0982 4.19378421053 0.0270759074942 0.661976664604 29856 27370 27370;27482;29856;29976;30397;31757;32126;32399;32690;35677;37405 58.7586526316 0.6979 10.4640421053 48.2946105263 0.954470049444 1.02402501512 1772 310 310;676;714;1056;1511;1634;1765;1772;2213;2416;4434 0.0 0.774003941349 chrM:5904-7445+ pseudogene mitochondrial protein pseudogene region (ENSG00000284591) 30405 578132 chr7:57167069-57167101+ NoOverlap chr7 57167069 57167101 + 6.93880003149 11 0.376487234441 -5.69314526428 12.6319452958 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57167068;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57167069-57167101%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57167069-57167101&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00859380817533 0.07153033969 1.01530634583 57234776 57234808 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57234775;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57167069-57167101%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57234776-57234808&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PIIIISTIITLFSVIQLK Same 579171 chr7:57167069-57167101+ 25703 25703 4702 0 244 57167069 57169403 311 311;1064;1719;18339;30405;36290 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57167069-57169403&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.151515151515 0.0 9.33935454545 0.3311 -8.6813 18.0206545455 0.074813693195 0.999725928911 18962 1605 1605;1729;3056;18611;18962;23881 19.7018727273 0.7787 -25.0130636364 44.7149363636 0.904118091054 0.91431778034 2085 484 484;596;1739;1843;2085;2580 0.849163058533 chrM:8366-8572+ 0.969546186357 chrM:8366-8572+ pseudogene MTCO3P10 mitochondrially encoded cytochrome c oxidase III pseudogene 10 (ENSG00000231537) 30409 551496 chr3:14810490-14810543+ NoOverlap chr3 14810490 14810543 + 7.33533332869 18 0.357924094843 6.08936109642 1.24597223227 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;14810489;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A14810490-14810543%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A14810490-14810543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0707237851645 0.0715053900488 0.351352303091 14851997 14852050 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;14851996;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A14810490-14810543%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A14851997-14852050&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLGGGGGAAAAQAEAQAEARRPER Same 552433 chr3:14810490-14810543+ 32987 32987 -2578 0 175 14810490 14819071 211 211;30409;44113;45247 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:14810490-14819071&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.814814814815 0.993103448276 4.01827222222 0.4228 1.99515 2.02312222222 -2.23165751888e-05 0.467185250931 41521 440 440;41521;52016;56426 3.64641111111 0.2087 0.545111111111 3.1013 0.02094207949 0.506274813474 26665 893 893;26665;62854;71416 0.0 0.260523705533 chr6:42104463-42107583- ENST00000566553.1 AntiNCintron coding exon(s) FGD5 alternative 5' CDS 30495 527287 chr19:12782533-12782595+ NoOverlap chr19 12782533 12782595 + 4.73808091027 21 0.485749890099 1.7048237267 3.03325718357 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12782532;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12782533-12782595%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12782533-12782595&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0632414662722 0.0709419119648 0.637332241579 12893347 12893409 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12893346;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12782533-12782595%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12893347-12893409&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CGGACVVRDVRHDGGRCVRGTRR Same 528733 chr19:12782533-12782595+ 30862 30862 -367 0 96 12775496 12806530 113 113;1182;3126;12882;12916;19147;21814;28171;30495;34266;70783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12775496-12806530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.730158730159 1.625 -0.817980952381 0.9147 -8.93591428571 8.11793333333 0.145561373364 0.95704955067 11868 845 845;1545;3224;5434;8474;11177;11868;16562;28502;47510;67609 -2.21346666667 0.3819 -13.2905285714 11.0770619048 0.159111073229 0.848663161241 7608 40 40;3058;6466;7449;7608;8225;15095;31105;55016;67420;71961 0.0 0.0 ENST00000589765.1 AntiNCintron not annotated putative regulatory region 30512 496189 chr12:70448007-70448036- NoOverlap chr12 70448007 70448036 - 10.7425299406 10 0.566504921035 -18.5246602058 29.2671901464 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70448006;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70448007-70448036-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70448007-70448036&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.197376909865 0.0708665858187 1.00758272283 70841787 70841816 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70841786;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70448007-70448036-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70841787-70841816&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTRLAQTILIPYLQGNTQQK Same 498189 chr12:70448007-70448036- 22944 22944 7568 0 155 70445357 70448659 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.433333333333 0.75 -4.44493 0.1397 -12.60776 8.16283 0.0265507498022 0.862699817432 30027 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 10.31625 0.191 -20.08418 30.40043 0.198714760464 1.04613129979 6284 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 30535 587648 chr8:105139340-105139429- NoOverlap chr8 105139340 105139429 - 2.71111003359 30 0.9305689072 -0.167319953442 2.87842998703 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;105139339;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A105139340-105139429-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A105139340-105139429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0826935820363 0.0707088906282 0.699668716405 106151568 106151657 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;106151567;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A105139340-105139429-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A106151568-106151657&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SMTMGRRND*WYLFPDFISLILFIPWPVYLD Same 588592 chr8:105139340-105139429- 30787 30787 -252 9 5467 105139340 105143726 7615 7615;9563;30535 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:105139340-105143726&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.455555555556 0.441176470588 -2.53850333333 1.0 -3.93875333333 1.40025 -0.0368124636357 0.468060839388 64761 25321 25321;26372;64761 -9.11963666667 0.9939 -10.0627166667 0.94308 -0.0245300860319 0.455750744696 52092 11489 11489;17672;52092 0.0 0.0 ENST00000518180.1 AntiNCintron not annotated potentially spurious 30537 504802 chr14:76138915-76138950- NoOverlap chr14 76138915 76138950 - 6.87368317445 12 0.889492891839 4.96421680351 1.90946637094 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;76138914;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76138915-76138950-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A76138915-76138950&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.200383135289 0.0706949985752 0.36660988015 76605258 76605293 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;76605257;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76138915-76138950-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A76605258-76605293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALPGPSRRGLGEPALPAALFGPAR Same 506648 chr14:76138915-76138950- 29698 29698 839 0 1204 76131383 76139120 1818 1818;4345;22997;27107;30537;31486;38498;41376;68067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:76131383-76139120&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 0.642857142857 6.30115833333 0.8411 2.09276666667 4.20839166667 0.0968558672041 0.590757112718 16210 4515 4515;9493;16210;27689;28296;48242;62795;67676;71399 -6.766925 0.7964 -12.4451666667 5.67824166667 -0.0315062120085 0.552131305551 58474 13549 13549;42486;43506;45749;54311;55020;58474;69721;73189 0.0 0.0 not annotated putative regulatory region 30561 521947 chr17:47896365-47896391- NoOverlap chr17 47896365 47896391 - 7.86264441411 9 0.870511940185 1.98944449425 5.87319991986 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;47896364;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896365-47896391-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A47896365-47896391&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.09819766474 0.07054681916 0.794394578067 45973731 45973757 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;45973730;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896365-47896391-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A45973731-45973757&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APTPDPAPGGNPRPRLPLPAASAR Same 523372 chr17:47896365-47896391- 28227 28227 2334 0 443 47896176 47896544 633 633;10409;17370;20193;30561;56450;73094;73160 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:47896176-47896544&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 0.551020408163 1.91266666667 0.9221 -2.44542222222 4.35808888889 -0.0274407413479 0.583901114334 58958 6473 6473;12368;17549;37782;39868;58958;68592;73642 1.38086666667 0.3966 -0.6414 2.02226666667 -0.0225106320558 0.389961419429 50232 14976 14976;26600;36070;36380;45476;50232;50264;57233 0.0 0.104534358401 chr7:100359337-100359537+ ENST00000376741.4,ENST00000613139.1 AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 30603 538847 chr2:62090719-62090826- NoOverlap chr2 62090719 62090826 - 2.30438615009 36 0.269309444487 -3.00072500358 5.30511115367 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62090718;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62090719-62090826-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62090719-62090826&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00134651504514 0.0703041533373 0.983676726405 62317854 62317961 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62317853;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62090719-62090826-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62317854-62317961&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WAILADNNTWHPISLSDCENRKGEWLCPQTTWNPDSSQTWPLISNGT Same 540225 chr2:62090719-62090826- 26924 26924 3679 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.0 -0.966780555556 0.0455 -1.66072777778 0.693947222222 0.0186489787869 0.442032684324 33131 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 -0.966780555556 0.0142 -1.66072777778 0.693947222222 -0.0464121958659 0.496450426014 69618 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000425966.6,ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NC,NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 30643 515940 chr17:2399714-2399746+ NoOverlap chr17 2399714 2399746 + 7.14845452525 11 0.859709939866 3.84567263993 3.30278188532 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2399713;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2399714-2399746%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2399714-2399746&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.16535568957 0.0700762420081 0.529588215058 2303008 2303040 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2303007;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2399714-2399746%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2303008-2303040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAPSPAGVSPVHVVGGGARPR Same 517316 chr17:2399714-2399746+ 29079 29079 1564 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.757575757576 0.970588235294 6.76482727273 0.9233 4.61090909091 2.15391818182 0.0941484887561 0.395531063311 16515 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 6.34655454545 0.563 4.76249090909 1.58406363636 0.0590296240568 0.381512452311 17017 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0849553096573 chr15:60004964-60005941+ ENST00000174618.4,ENST00000574559.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 30732 592467 chr9:95426721-95426765- NoOverlap chr9 95426721 95426765 - 5.7426866293 15 0.760116985835 3.59911338116 2.14357324814 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;95426720;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A95426721-95426765-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A95426721-95426765&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.187433902435 0.0695357815237 0.447274960541 98189003 98189047 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;98189002;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A95426721-95426765-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A98189003-98189047&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAAAHGRQASRCQQTAFVSPFMLINFCENLHVN Same 593419 chr9:95426721-95426765- 30232 30232 500 0 17314 95426721 95426765 Best 30732 30732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:95426721-95426765&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.255681818182 4.76724 0.8832 4.5508 0.21644 0.0504191587144 0.281166325547 23060 Best 23060 23060 3.03525333333 0.3154 3.67522 -0.639966666667 -0.00426100826151 0.331270881293 37581 Best 37581 37581 0.0 0.0 ENST00000433644.2 NC not annotated potentially spurious 30796 489045 chr11:76719816-76719866- NoOverlap chr11 76719816 76719866 - 6.38844697616 17 0.416580273675 4.02083542066 2.36761155549 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;76719815;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76719816-76719866-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A76719816-76719866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0581133138235 0.0692177813194 0.493579225775 76430860 76430910 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;76430859;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A76719816-76719866-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A76430860-76430910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTLPPLAPVVVLWMHSAVLGGLEMTTLLSR Same 491034 chr11:76719816-76719866- 32422 32422 -1626 0 85 76712306 76719866 98 98;1554;2355;2775;9069;9723;10637;30796 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:76712306-76719866&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.647058823529 0.472222222222 14.9051941176 0.9219 8.31771176471 6.58748235294 0.660324595123 0.785206693766 2258 88 88;186;1371;1479;2258;2338;2434;2689 42.4886705882 0.855 11.6219235294 30.8667470588 1.01568244586 1.03011984227 838 Best 838 838;995;1128;1187;1347;1571;1780;2549 0.0 0.413443159518 chrX:109465142-109465443- pseudogene extension GUCY2EP extended [ENSG00000204529] 30805 561558 chr4:41882745-41882783- NoOverlap chr4 41882745 41882783 - 6.31043835443 13 0.881012494791 4.03345381297 2.27698454146 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41882744;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41882745-41882783-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41882745-41882783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.195465326602 0.069174750183 0.434168165446 41884762 41884800 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41884761;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41882745-41882783-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41884762-41884800&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IVNFLLSLCLAAARPIRNYRSIN Same 562549 chr4:41882745-41882783- 29764 29764 1041 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.615384615385 1.08333333333 -0.613730769231 0.9938 -2.16092307692 1.54719230769 -0.0280492796966 0.387665776454 59319 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -10.0008 0.7603 -11.7693538462 1.76855384615 -0.0460069317013 0.389548714566 69350 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 not annotated putative regulatory region 30838 531854 chr19:49642181-49642300- NoOverlap chr19 49642181 49642300 - 3.24053001665 40 0.65663729305 2.00367251337 1.23685750328 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49642180;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49642181-49642300-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49642181-49642300&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.195287254044 0.0690035645904 0.536858399248 50145438 50145557 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;50145437;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49642181-49642300-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A50145438-50145557&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPNSAPPTPIGPSPAARTAAAILPRRSGCGSGPGAGRGGLGRGS Same 533329 chr19:49642181-49642300- 32974 32974 -2136 0 570 49639968 49642300 868 868;30838;31024;64121 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49639968-49642300&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.841666666667 0.898345153664 -0.36467 0.7522 -3.551425 3.186755 0.0494339413114 0.695145397924 23278 Best 23278 23278;28431;64936;67214 -3.6445825 0.308 -6.4325925 2.78801 0.00587163697298 0.593158562617 32520 Best 32520 32520;39162;57433;69715 0.0 0.0 ENST00000360565.7 AntiUTR5 not annotated putative regulatory region 30847 561537 chr4:41863913-41863960- NoOverlap chr4 41863913 41863960 - 5.29738131166 16 0.980605783169 2.73710011598 2.56028119568 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41863912;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41863913-41863960-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41863913-41863960&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.176701759499 0.0689325452383 0.518537480832 41865930 41865977 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41865929;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41863913-41863960-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41865930-41865977&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPIQPVIKAG*WQGWAPSKAVAQMHWEETGR Same 562528 chr4:41863913-41863960- 33346 33346 -2499 4 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.625 0.459330143541 1.46944375 0.9956 -0.4882125 1.95765625 0.0468957959782 0.44609146735 23856 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 0.1167 0.8735 -5.74915 5.86585 0.0800614649894 0.608724747807 13801 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 not annotated putative regulatory region 30920 570928 chr6:30934623-30934661+ NoOverlap chr6 30934623 30934661 + 5.86873854124 13 0.604772552541 0.122453827124 5.74628471411 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;30934622;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30934623-30934661%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A30934623-30934661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0465340873061 0.0684743718483 0.858160692777 30902400 30902438 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;30902399;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A30934623-30934661%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A30902400-30902438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLGDGPGQHTSTGAMDTVLVLLLGLQALAGPSEHLGPDR Same 571952 chr6:30934623-30934661+ 32182 32182 -1262 0 517 30934623 30937307 773 773;30920 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:30934623-30937307&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.0 6.35177692308 0.7622 -7.61847692308 13.9702538462 0.307267925697 1.04669874886 5452 1445 1445;5452 5.30222307692 0.3495 -9.64507692308 14.9473 0.213532006021 0.915643648871 5913 2735 2735;5913 0.0 0.260989108865 chr19:17331088-17331215- coding exon(s) DPCR1 3 cassette exons 30970 549342 chr22:50697523-50697726+ NoOverlap chr22 50697523 50697726 + 2.57421763833 68 0.383299673726 1.33429556778 1.23992207055 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50697522;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50697523-50697726%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50697523-50697726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0739336136895 0.0681649124113 0.604000571349 51135951 51136154 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51135950;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50697523-50697726%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51135951-51136154&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAAAAWSEPGAPRSCIRIRARFPAPPAPPAPPPRGPKRKLYSAVPGRKFIAVKAHSPQGEGEIPLHRGEAVKGEGR None NA NA 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.730392156863 1.06980108499 4.62631470588 0.6094 2.51479117647 2.11152352941 0.324344316357 0.691895645804 5116 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 16.4165161765 0.6703 1.91845147059 14.4980647059 0.979392275869 0.994406463493 1436 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.188526236754 chr19:50702467-50702660- ENST00000414786.6 NC redundant PhyloCSF signals are accounted for elsewhere on the list 30998 525522 chr18:26548427-26548666- NoOverlap chr18 26548427 26548666 - 3.02870503422 80 0.607116807813 3.05042748855 -0.0217224543332 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26548426;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26548427-26548666-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26548427-26548666&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.333162365262 0.0679657408732 0.435598131053 24128391 24128630 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;24128390;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26548427-26548666-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A24128391-24128630&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGMTIGARLL*EPGFASR*LKVIKHKSSQRCGPI*RMRPARGLAERRQYGENAWQRGL*HQRGRQRQRCRRRRREQWGAGRGRAR Same 526965 chr18:26548427-26548666- 22879 22879 8119 54 513 26546760 26549891 768 768;8399;25501;30998;36827;39211;40894;58515;70807;71876 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26546760-26549891&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.02031176193 -4.1906575 0.8143 -4.10978375 -0.08087375 -0.0529216800963 0.304174846769 71661 2222 2222;11084;12141;14614;15029;28171;62885;67707;71661;73517 -9.354915 0.6418 -12.2750675 2.9201525 0.0622848714882 0.609226538089 16429 2942 2942;16429;16512;26392;33196;52681;55735;64991;73449;73633 0.0 0.0101178146575 chr1:58576185-58577156- ENST00000580191.5,ENST00000317932.11 CDSintron,UTR5intron coding exon(s) KCTD1 5' extension 30999 584701 chr8:78648982-78649011+ NoOverlap chr8 78648982 78649011 + 6.09742980003 10 0.452597848478 -7.22179012299 13.319219923 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78648981;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78648982-78649011%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78648982-78649011&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0258311020991 0.0679618982514 0.997869014237 79561217 79561246 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79561216;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78648982-78649011%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79561217-79561246&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLVPNAIWQTDITQHSPFGR Same 585632 chr8:78648982-78649011+ 23665 23665 7334 0 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.666666666667 -3.2653 0.0306 -4.6141 1.3488 0.0435070856765 0.358595136637 24647 Best 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 5.62033 0.1614 -24.54929 30.16962 0.195488884703 1.05107650282 6371 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 31018 561554 chr4:41882497-41882553- NoOverlap chr4 41882497 41882553 - 3.90094742022 19 0.817475595604 -0.0252841767904 3.92623159701 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41882496;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41882497-41882553-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41882497-41882553&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0852938978872 0.067885343136 0.736594241604 41884514 41884570 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41884513;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41882497-41882553-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41884514-41884570&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VYRREMYKIIETGGGRSEPSGMR Same 562545 chr4:41882497-41882553- 30450 30450 568 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.543859649123 1.5 -2.73619473684 0.985 -4.12107368421 1.38487894737 -0.048161297802 0.413623091279 70445 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -9.24497368421 0.7704 -17.1696526316 7.92467894737 0.00410025456963 0.678255612927 33351 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 ENST00000499082.2 NC not annotated putative regulatory region 31024 531855 chr19:49642197-49642280- NoOverlap chr19 49642197 49642280 - 4.33407854608 28 0.663223577369 3.94201075605 0.392067790031 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49642196;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49642197-49642280-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49642197-49642280&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.263303156092 0.0678582809002 0.346615842421 50145454 50145537 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;50145453;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49642197-49642280-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A50145454-50145537&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPGQLATQLRPAHPNRPEPRGPDCRRHLTPPLGLRLRPRRGAGR Same 533330 chr19:49642197-49642280- 31952 31952 -928 0 570 49639968 49642300 868 868;30838;31024;64121 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49639968-49642300&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.869047619048 1.01818181818 -5.10228214286 0.7434 -4.49461785714 -0.607664285714 -0.0371590611045 0.277781506747 64936 23278 23278;28431;64936;67214 -5.937675 0.3024 -5.67493928571 -0.262735714286 -0.0465889603434 0.411612067586 69715 32520 32520;39162;57433;69715 0.0 0.0 ENST00000360565.7 AntiUTR5 not annotated putative regulatory region 31089 512858 chr16:88887170-88887214+ NoOverlap chr16 88887170 88887214 + 5.25916006565 15 0.572907097988 0.147360098362 5.11179996729 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;88887169;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A88887170-88887214%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A88887170-88887214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0445501597125 0.0675461174121 0.820609706291 88953578 88953622 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;88953577;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A88887170-88887214%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A88953578-88953622&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AATPPSPASASPFPTSASTRPSSSAGCRPVFLFGWLNR Same 514505 chr16:88887170-88887214+ 32028 32028 -939 0 15260 88884148 88887214 25779 25779;31089 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:88884148-88887214&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.711111111111 0.46875 -1.35746666667 0.7912 -7.15482 5.79735333333 0.00747147079867 0.75644573084 37903 Best 37903 37903;54425 -1.44920666667 0.3997 -8.86617333333 7.41696666667 0.0478218184373 0.663564463158 19181 Best 19181 19181;54757 0.0 0.0 ENST00000268679.8 AntiCDSintron not annotated potentially spurious 31104 482369 chr10:117546674-117546760- NoOverlap chr10 117546674 117546760 - 2.93771384502 29 0.850805702665 0.574200001256 2.36351384377 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117546673;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117546674-117546760-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117546674-117546760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.131262349406 0.0674341176951 0.624752789781 119306185 119306271 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119306184;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117546674-117546760-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119306185-119306271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TVHFSPALAQGARRCARGLTRTQRLQAAWAARRTKTTAASAVQEK Same 484296 chr10:117546674-117546760- 30774 30774 330 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.689655172414 1.06333333333 -2.72691034483 0.9801 -5.66162068966 2.93471034483 -0.0159469420246 0.598989328502 51268 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -11.7093344828 0.7531 -11.3820827586 -0.327251724138 -0.0569455373731 0.38612714695 73138 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000442245.5,ENST00000546446.2 AntiCDSintron,AntiNCintron not annotated putative regulatory region 31159 633696 chr13:51452057-51452302+ Extension chr13 51452057 51452302 + 2.61547441612 82 0.323684979354 1.8552122147 0.760262201427 chr13:51451991-51452302+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51452056;246;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51452057-51452302%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51452057-51452302&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0860868322936 0.0671029760247 0.536542438253 52026193 52026438 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;52026192;246;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51452057-51452302%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A52026193-52026438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCGTGGGTGRATGKHRGEVTRRRRGAQRPRRPHSTAHAAATPPRRPPHTDRSPHTARGRSPGPGRTRLAAPARPRGGGGGPRAR Same 634352 chr13:51452057-51452302+ 30079 30079 1080 0 1692 51451954 51453308 2509 2509;31159;43962;47923;61724;62277 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51451954-51453308&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.784552845528 0.848093083387 -3.63732317073 0.5767 -7.16327926829 3.52595609756 0.0315555955351 0.62907826701 28117 13006 13006;20772;28117;30456;57539;72100 -7.2824097561 0.3447 -12.4568719512 5.17446219512 0.0367188128881 0.710037298448 21846 8845 8845;20580;21846;25121;49423;71224 0.0 0.0629769745591 chr12:57737079-57738246- ENST00000461515.5,ENST00000311234.8,ENST00000469430.5 AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 31185 574584 chr6:34236757-34236873- NoOverlap chr6 34236757 34236873 - 2.90309495956 39 0.742074014081 1.49963078476 1.40346417481 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34236756;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34236757-34236873-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34236757-34236873&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.189836942579 0.0669603002694 0.554652134926 34204534 34204650 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34204533;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34236757-34236873-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34204534-34204650&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ERPRGRGDGPARASRVTQGAGPCK*ARGFKRAAARQPPPPLPR Same 575616 chr6:34236757-34236873- 33394 33394 -2209 14 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.769230769231 0.815331010453 -1.54146666667 0.7275 -2.02876153846 0.487294871795 -0.0429699986781 0.424960431926 68214 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -7.58590769231 0.3472 -7.10205897436 -0.483848717949 -0.0508303016173 0.435390877059 71682 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.156620352933 chr16:77212282-77212369+ ENST00000311487.9 AntiUTR5 protein-coding gene protein-coding gene ENSG00000186577 31190 561535 chr4:41857708-41857761- NoOverlap chr4 41857708 41857761 - 3.86115562088 18 0.980193789578 -1.19527225362 5.0564278745 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41857707;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41857708-41857761-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41857708-41857761&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00281891292082 0.0669377286528 0.852621678493 41859725 41859778 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41859724;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41857708-41857761-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41859725-41859778&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPRTQKIIVDNSMFRFDNGCSNK Same 562526 chr4:41857708-41857761- 37444 37444 -6254 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.351851851852 1.22727272727 -0.133738888889 0.9792 -1.21751111111 1.08377222222 -0.00572311368236 0.385859436747 44549 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -4.99867777778 0.906 -7.18452222222 2.18584444444 -0.0160041579669 0.460301721265 45070 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 not annotated putative regulatory region 31192 526070 chr18:56873607-56873714- NoOverlap chr18 56873607 56873714 - 3.19109167324 36 0.877038562939 2.8429971983 0.348094474938 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;56873606;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A56873607-56873714-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A56873607-56873714&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.306208100125 0.0669129399607 0.393687991924 54540838 54540945 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;54540837;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A56873607-56873714-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A54540838-54540945&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQLWLWISILMY*SRP*KKPMKQLLEHGTAGILINRQGIDPSRSASAMATA Same 527514 chr18:56873607-56873714- 31318 31318 -126 7 17506 56873607 56873950 Best 31192 31192;32944;35519;70244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:56873607-56873950&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.546296296296 0.248847926267 0.0147166666667 0.9931 -1.83767777778 1.85239444444 0.101382366152 0.560852310292 15694 Best 15694 15694;38183;55401;69108 -7.31429166667 0.7402 -10.4797583333 3.16546666667 0.0172467216372 0.582041129422 27950 22856 22856;27950;34366;55463 0.0 0.0 ENST00000586391.1,ENST00000254442.7,ENST00000589935.1 NC,AntiCDSintron,AntiUTR5intron not annotated potentially spurious 31196 537028 chr2:227614620-227614718+ NoOverlap chr2 227614620 227614718 + 3.56861512589 33 0.706709576886 2.71106359453 0.857551531358 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227614619;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227614620-227614718%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227614620-227614718&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.24356632899 0.0668902329827 0.444573796362 228479336 228479434 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228479335;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227614620-227614718%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228479336-228479434&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVRRQQQITGVLQQPPQQPRQQGQQLEQQPTR*HLQVVQLPQTPPQPPPQPPPQPPPQPPQPPPQPPQLPQPQQPMVSVER Same 538398 chr2:227614620-227614718+ 33230 33230 -2034 2 561 227598893 227617809 853 853;1652;2344;9463;10241;31196;35213 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227598893-227617809&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 0.415966386555 1.61098787879 0.9154 6.28453939394 -4.67355151515 -0.03160500216 0.0456603218561 61544 692 692;818;1157;2569;3216;3360;61544 1.14915151515 0.5393 5.28791212121 -4.13876060606 0.010322247627 0.290302826242 30629 2617 2617;3136;3286;3380;3692;5489;30629 0.0 0.159745646965 chr12:52691165-52691439- ENST00000264387.8 AntiCDSintron protein-coding gene (shared cluster) protein-coding genes ENSG00000284643, ENSG00000284622, ENSG00000284704, ENSG00000284631 31204 560728 chr4:185071567-185071605+ NoOverlap chr4 185071567 185071605 + 5.52634613331 13 0.895868913264 0.60763849318 4.91870764013 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;185071566;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A185071567-185071605%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A185071567-185071605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0946834819957 0.0668585088112 0.776315165572 185992721 185992759 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;185992720;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A185071567-185071605%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A185992721-185992759&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGDECGNVEWMFLFFGFELTVVSVCFLELIREDREVSVGGSK Same 561716 chr4:185071567-185071605+ 30267 30267 937 0 3332 185071430 185071645 4626 4626;13043;31204;57826;61815 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:185071430-185071645&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.615384615385 0.655462184874 -1.62766923077 0.9999 -0.131084615385 -1.49658461538 -0.0385115468884 0.162388848024 65721 5256 5256;7014;8229;65721;70306 -10.0711461538 0.8883 -7.22284615385 -2.8483 -0.040043463826 0.226189299586 65284 26011 26011;49583;61981;65284;66794 0.0 0.0 ENST00000509017.5 NC not annotated potentially spurious 31237 546264 chr21:8216131-8216598+ NoOverlap chr21 8216131 8216598 + 1.29183653112 156 0.389068769282 0.594131424183 0.697705106934 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8216130;468;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8216131-8216598%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8216131-8216598&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.108026742331 0.0665823688564 0.661110230013 115602 116069 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;115601;468;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8216131-8216598%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A115602-116069&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPPEPRGRYAATSRRAAAVSLEA*GAGPGGAAAGADLGGSSKYSNENFEGRSGEGFHVNSS*TWVSRS*EMGERRSEGTGDGLRCPRPIERESGSDPRIRSGGDGRREASSAVTRPIPEKPAGAPGRVLFSL*RAGRPGMGSPRERGPCLGKRRGSGGVR Same 547677 chr21:8216131-8216598+ 22317 22317 8920 92 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.655982905983 1.09597030753 -0.120251923077 0.2482 -0.181712820513 0.0614608974359 0.0453898807879 0.640428450705 24212 Best 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -1.81465641026 0.1713 -2.12570192308 0.311045512821 0.0322140123421 0.550031527278 23093 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0446809392882 chr3:9840184-9840335- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 31257 538855 chr2:62097033-62097272- NoOverlap chr2 62097033 62097272 - 1.47196120862 80 0.249224078737 -2.5043374938 3.97629870242 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62097032;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62097033-62097272-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62097033-62097272&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00802932453969 0.0664507257441 0.911489798108 62324168 62324407 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62324167;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62097033-62097272-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62324168-62324407&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVIQDDLDKGLIIPCTSPWNTPIIPVKKPNGTSWRLVQDLRAINKIIIPRHPVVPNPHTLLSNIPITASHFSVTDLCSAFFSIPVEQNSQYLFAFTWANHQYMWTVLPQGYSESPTYFSQILKPDLDDIEFPNESTLIQYVIYCCAYPPYQNAEK Same 540233 chr2:62097033-62097272- 19813 19813 11444 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4125 0.0 -1.3385125 0.0306 -2.08859625 0.75008375 -0.0184117120379 0.448370735346 53045 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 -1.3385125 0.0096 -2.08859625 0.75008375 -0.0273127953114 0.539315977017 54635 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 31264 549327 chr22:50674582-50674707+ NoOverlap chr22 50674582 50674707 + 3.25198574506 42 0.218000559497 -0.0560119059824 3.30799765104 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50674581;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674582-50674707%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50674582-50674707&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0187546574811 0.0663894483378 0.817928472541 51113010 51113135 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51113009;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674582-50674707%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51113010-51113135&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AESPGAPFPGASGPGPGPGAGMDGPGASAVVVRVGIPDLQQTVSPAALGPAVPLR Different 689503 chr22:50674582-50674641+ 46963 46963 -15699 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.825396825397 1.02552719201 2.75963571429 0.3831 -2.43027380952 5.18990952381 0.132869531087 0.897491243421 12843 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 3.30155 0.5378 -10.7141261905 14.0156761905 0.649636428917 1.01559682734 2997 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.00118326304024 chr19:50716665-50716919- 0.33046193108 chr11:71147120-71147326- ENST00000414786.6 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 31465 514458 chr16:56191504-56191677- NoOverlap chr16 56191504 56191677 - 3.21673448872 58 0.489393401262 2.43107245914 0.785662029581 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;56191503;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191504-56191677-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A56191504-56191677&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.167027698833 0.0651915714691 0.535702345929 56225416 56225589 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;56225415;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191504-56191677-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A56225416-56225589&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CMCIAALQPSVRPRRLRRPPRAGQGWAGGRAEGQVSSGRRRRCLPELASLGEPTGERGRAPGSRSQPGAR Same 516110 chr16:56191504-56191677- 30320 30320 1145 0 1286 56191313 56194112 1942 1942;3444;31465;36646;38456;47043;50502;59548;64898;65693 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:56191313-56194112&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.758620689655 0.895438596491 -5.97783793103 0.7459 -6.28733793103 0.3095 -0.0391356223637 0.332928144897 66065 5744 5744;16309;26528;60646;61684;66065;68363;69167;72514;73281 -12.7779913793 0.3839 -10.7820293103 -1.99596206897 -0.0271229249464 0.387492199426 54474 7040 7040;17639;26908;52826;54474;57942;62845;66974;67638;71986 0.0 0.0324640115421 chr15:43421025-43421174- ENST00000262493.10 AntiUTR5 not annotated putative regulatory region 31471 530786 chr19:31962199-31962255- NoOverlap chr19 31962199 31962255 - 2.84489996182 19 0.93209735256 -3.32201038536 6.16691034719 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;31962198;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A31962199-31962255-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A31962199-31962255&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.157011738931 0.0651832207866 0.958930218152 32453105 32453161 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;32453104;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A31962199-31962255-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A32453105-32453161&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FFFNIFSYYTASRTNHVNYNCQPVTVK Same 532249 chr19:31962199-31962255- 34648 34648 -3177 0 1495 31961652 31966868 2226 2226;24190;29221;31471 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:31961652-31966868&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.385964912281 0.508928571429 -0.5536 1.0 -4.36495789474 3.81135789474 0.0447490761531 0.630885593242 24363 4902 4902;20668;24363;57262 -6.29982105263 0.8444 -13.7005473684 7.40072631579 0.0252258676944 0.677081293043 25248 8446 8446;24608;25248;31804 0.0 0.0 not annotated potentially spurious 31486 504798 chr14:76136692-76136841- NoOverlap chr14 76136692 76136841 - 1.47732599288 50 0.812916456855 -1.64133601867 3.11866201155 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;76136691;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76136692-76136841-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A76136692-76136841&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.093642078654 0.0650847518674 0.81515274015 76603035 76603184 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;76603034;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76136692-76136841-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A76603035-76603184&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ENCVEGEGKGGGRRGRKEAEGSNRVINRVPFISKYSDCHQ*DERLINAGSREVIR Same 506644 chr14:76136692-76136841- 30512 30512 974 12 1204 76131383 76139120 1818 1818;4345;22997;27107;30537;31486;38498;41376;68067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:76131383-76139120&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.513333333333 0.564971751412 -2.023364 0.9899 -3.923014 1.89965 0.0328445969209 0.565863181977 27689 4515 4515;9493;16210;27689;28296;48242;62795;67676;71399 -8.936246 0.5731 -10.4857 1.549454 -0.0169281631544 0.538273119391 45749 13549 13549;42486;43506;45749;54311;55020;58474;69721;73189 0.0 0.0 not annotated putative regulatory region 31491 584700 chr8:78648874-78648900+ NoOverlap chr8 78648874 78648900 + 7.81459996435 9 0.449064537185 -8.22203365962 16.036633624 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78648873;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78648874-78648900%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78648874-78648900&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00450232932228 0.0650334202264 0.960989319656 79561109 79561135 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79561108;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78648874-78648900%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79561109-79561135&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TAASLTLAQACMIIKTCPDCQQHSLSSFSLGLGANPR Same 585631 chr8:78648874-78648900+ 24005 24005 7486 0 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.296296296296 0.0 -1.63131111111 0.0306 -2.73914444444 1.10783333333 0.0419815656562 0.325244459751 25022 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 14.1753222222 0.1635 -3.28285555556 17.4581777778 0.107002567139 0.920480327161 10862 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 31506 530410 chr19:18247666-18247713- NoOverlap chr19 18247666 18247713 - 4.57133127749 16 0.412298771649 -2.30906876735 6.88040004484 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;18247665;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18247666-18247713-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A18247666-18247713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0040041187712 0.0649700128075 0.980672216018 18358476 18358523 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;18358475;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A18247666-18247713-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A18358476-18358523&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATDASSMRHSRTTLSFLLSEVSR Same 531873 chr19:18247666-18247713- 29127 29127 2379 0 692 18236900 18263956 1071 1071;2349;2964;6293;18798;31506 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:18236900-18263956&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.520833333333 0.0 9.1270375 0.8406 -8.1277875 17.254825 0.571497084444 1.00347981099 2710 1074 1074;2068;2444;2621;2710;8481 10.9667375 0.3183 -7.65754375 18.62428125 0.424510004198 1.00625281187 3839 2208 2208;2924;3816;3839;4374;14268 0.0 0.0 ENST00000355502.7 UTR5intron protein-coding gene protein-coding gene ENSG00000284797; found after looking at high-scoring intergenic PCCRs 31542 542439 chr2:236237283-236237312- NoOverlap chr2 236237283 236237312 - 8.43112000227 10 0.475889219501 4.11834998727 4.312770015 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;236237282;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A236237283-236237312-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A236237283-236237312&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0486481478047 0.0646430204648 0.619091465381 237145926 237145955 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;237145925;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A236237283-236237312-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A237145926-237145955&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LRARAGGATPR Same 543818 chr2:236237283-236237312- 33726 33726 -2184 0 542 236208836 236241502 822 822;6974;25987;26845;30832;31542 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:236208836-236241502&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.866666666667 1.45454545455 1.50477 0.726 0.15738 1.34739 -0.0154824334268 0.339930537193 50927 615 615;4249;12585;50927;61830;62940 -3.49143 0.3484 -4.99953 1.5081 -0.0287162115379 0.378270007124 55952 201 201;4904;10592;24510;51714;55952 0.0 0.124774917191 chr5:95620276-95621580+ ENST00000409749.7,ENST00000415226.1 CDSintron,AntiNCintron coding exon(s) ASB18 intronic alternative ATG 31595 518089 chr17:48611229-48611258+ NoOverlap chr17 48611229 48611258 + 6.00279998779 10 0.658455786984 -2.88139013052 8.88419011831 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48611228;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48611229-48611258%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48611229-48611258&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0374915773974 0.064260550888 1.02796868616 46688591 46688620 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46688590;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48611229-48611258%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46688591-46688620&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLEAACRRDLGRK Same 519490 chr17:48611229-48611258+ 33233 33233 -1638 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.857142857143 -0.76087 0.9657 -10.68058 9.91971 0.0224961244013 0.962643631945 31595 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -9.07751 0.4434 -14.1025 5.02499 -0.0332796707688 0.497988148472 60017 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000567101.2 AntiNCintron not annotated putative regulatory region 31604 479602 chr10:129846338-129846370+ NoOverlap chr10 129846338 129846370 + 5.45392733812 11 0.975118084022 -1.58599996296 7.03992730108 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129846337;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129846338-129846370%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129846338-129846370&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0487138195277 0.0641881880106 0.950064954496 131644602 131644634 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131644601;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129846338-129846370%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131644602-131644634&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSIQANPPLSEATLFACIQNNVCAMYWLSVAPQLPIKPRALRSFKKIAAK Same 481507 chr10:129846338-129846370+ 35014 35014 -3410 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.424242424242 1.34693877551 7.70076363636 0.9816 -1.54054545455 9.24130909091 0.36222392829 0.931188802556 4494 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 1.66795454545 0.9356 -11.0405545455 12.7085090909 0.144675420315 0.832484112216 8256 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 31639 462827 chr1:923849-923884+ NoOverlap chr1 923849 923884 + 6.93335017562 12 0.494953078508 1.9282749941 5.00507518152 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;923848;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A923849-923884%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A923849-923884&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0417368751231 0.0640132895233 0.756247706842 859229 859264 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;859228;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A923849-923884%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A859229-859264&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HAPPAGARAARRAGAV Same 464691 chr1:923849-923884+ 32762 32762 -1123 0 169 923849 924956 201 201;31639;35146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:923849-924956&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.944444444444 1.09090909091 5.05816666667 0.5867 2.45966666667 2.5985 0.00894038530674 0.454137475684 37252 322 322;37252;64576 -1.713775 0.6072 -8.464 6.750225 0.0313206154119 0.610531169435 23360 775 775;23237;23360 0.0 0.101264679439 chr7:149791302-149791393+ coding exon(s) SAMD11 5' extension 31672 492599 chr12:89352475-89352528+ NoOverlap chr12 89352475 89352528 + 4.59205554922 18 1.0 1.41086675061 3.18118879861 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;89352474;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89352475-89352528%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A89352475-89352528&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.129789620232 0.0637849039257 0.628231107854 89746252 89746305 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;89746251;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A89352475-89352528%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A89746252-89746305&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPPARGSSSMDTNSERLNGYILR Same 494581 chr12:89352475-89352528+ 37263 37263 -5591 0 1997 89351989 89353104 2898 2898;3067;8028;9679;12637;22392;31672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:89351989-89353104&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.964285714286 -2.85952777778 0.9927 -4.43657777778 1.57705 -0.0476021520802 0.423898626757 70262 3934 3934;7220;23441;23638;59195;70262;73002 -6.23436111111 0.8373 -7.77691666667 1.54255555556 -0.0296740327838 0.430111405297 56829 3920 3920;22214;30464;33580;34681;56829;66039 0.0 0.0 ENST00000611513.1,ENST00000279488.7 NC,AntiUTR5 not annotated putative regulatory region 31683 500651 chr14:21736943-21736969+ NoOverlap chr14 21736943 21736969 + 8.08391115401 9 0.706268914829 1.51332226064 6.57058889336 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;21736942;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21736943-21736969%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A21736943-21736969&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0697891216411 0.0637190818488 0.857067708649 22205225 22205251 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22205224;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A21736943-21736969%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22205225-22205251&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSLSDTAVYYCLVGDTQ None NA NA 0 231 21736694 21736969 291 291;5329;31683 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:21736694-21736969&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.482142857143 7.07763333333 0.724 -3.72231111111 10.7999444444 0.113474703671 0.979720110618 14549 1450 1450;14549;18625 17.2482222222 0.4556 3.42754444444 13.8206777778 0.373260111343 0.797310122258 4102 882 882;4102;12418 0.0 0.0 ENST00000390426.2 NC immunoglobulin segment overlaps an immunoglobulin region 31694 520382 chr17:8226990-8227025- NoOverlap chr17 8226990 8227025 - 6.14818347494 12 0.686321558455 0.513766606649 5.63441686829 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8226989;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8226990-8227025-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8226990-8227025&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.063166572374 0.0636568462634 0.833679406993 8130308 8130343 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8130307;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8226990-8227025-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8130308-8130343&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RQGRGFEPRTGQWVAFFCVCFVF Same 521792 chr17:8226990-8227025- 32661 32661 -967 0 1341 8221594 8227025 2014 2014;17863;26203;31694;31965;37522;40474;40990;66443;67460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8221594-8227025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.722222222222 1.27810650888 1.83676666667 0.9985 -2.91146666667 4.74823333333 0.0595621646856 0.649192172029 21333 2913 2913;4601;11583;16441;20948;21333;25351;28719;65647;67294 1.83676666667 0.3121 -2.91146666667 4.74823333333 0.00830418378877 0.527989603368 31456 5986 5986;8484;15863;24228;24536;28672;31456;32683;52097;52689 0.0 0.0 ENST00000315684.12,ENST00000449476.6 UTR3,NC not annotated 6 tRNAs 31699 546259 chr21:8215696-8215980+ NoOverlap chr21 8215696 8215980 + 1.66391053168 95 0.387301923841 0.285805258312 1.37810527337 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8215695;285;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215696-8215980%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8215696-8215980&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0074376215952 0.0636149546354 0.597587463657 115161 115445 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;115160;285;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215696-8215980%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A115161-115445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPARWRGAGRGMRVPSGPLLVSRTGAAG*TERRVKAPDADAHQTPEKVLVDIDSRTVAMEVGIR*GVCNNSPAESTSPENGWRWSVGPIPGRRRQSRVDGSGGGGAR Same 547672 chr21:8215696-8215980+ 24131 24131 7568 59 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.60701754386 1.01146601147 -0.813581052632 0.2687 -0.7161 -0.0974810526316 -0.0202270593063 0.37410669943 54312 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -3.49123894737 0.1976 -2.96272 -0.528518947368 -0.020082426354 0.481877979836 48165 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.142118224642 chr3:9841908-9842082- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 31738 538850 chr2:62091202-62091267- NoOverlap chr2 62091202 62091267 - 2.78771807795 22 0.37847923039 -3.76811817695 6.5558362549 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62091201;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62091202-62091267-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62091202-62091267&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0182578579292 0.0634059553176 1.00050815615 62318337 62318402 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62318336;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62091202-62091267-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62318337-62318402&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IGHIEGMLFQEEGKGWEAALKDNTALIKWIEETR Same 540228 chr2:62091202-62091267- 27745 27745 3993 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.409090909091 0.0 -0.353972727273 0.0438 -1.69745909091 1.34348636364 0.0304061113125 0.435476426255 28529 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 -0.353972727273 0.0137 -1.69745909091 1.34348636364 -0.0221005570953 0.459189817291 49875 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 31751 552740 chr3:71006455-71006541+ NoOverlap chr3 71006455 71006541 + 2.68554141604 29 0.92469672694 -0.381755036527 3.06729645256 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;71006454;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71006455-71006541%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A71006455-71006541&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0590256997282 0.06330656281 0.71697261656 71055606 71055692 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;71055605;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71006455-71006541%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A71055606-71055692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STSYTFMKYQQSKLWIF*KVFNYFY*KENRCLR Same 553681 chr3:71006455-71006541+ 32022 32022 -271 14 1139 71003497 71007603 1733 1733;12046;22344;31751;34119;35077;44486;44775 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:71003497-71007603&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.287356321839 1.11538461538 -2.34804827586 1.0 -3.54945172414 1.20140344828 -0.0355293586667 0.448123717645 64024 3178 3178;6887;32675;36085;37626;45905;46741;64024 -4.51805517241 0.7062 -5.83205862069 1.31400344828 0.0115809282232 0.486623628446 30087 10807 10807;16615;30087;31390;48859;55997;64759;66587 0.0 0.0 ENST00000318789.8,ENST00000327590.8 AntiCDSintron,AntiNCintron not annotated putative regulatory region 31797 490580 chr12:7620539-7620643+ NoOverlap chr12 7620539 7620643 + 2.88278573241 35 0.236093254422 -1.83329998425 4.71608571666 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;7620538;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7620539-7620643%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A7620539-7620643&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00207438354828 0.0630609008134 0.931807356343 7773135 7773239 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;7773134;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7620539-7620643%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A7773135-7773239&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TNAHSAIFTLLLPMFINR*LFSTNHKNTDTL*FGA*ARIVGTAFHLLFVFLFL Same 492556 chr12:7620539-7620643+ 29361 29361 2436 22 1000 7620539 7637633 1528 1528;3369;23912;30341;31797;32931;38172;38567;44054;46877;50926 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:7620539-7637633&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.380952380952 0.28 -2.16364857143 0.0793 -2.08039142857 -0.0832571428571 0.00859591215789 0.356248050615 37405 27370 27370;27482;29856;29976;30397;31757;32126;32399;32690;35677;37405 32.9137 0.6745 10.8795485714 22.0341514286 1.05102287641 1.04253265816 310 Best 310 310;676;714;1056;1511;1634;1765;1772;2213;2416;4434 0.0 0.80348937339 chrM:5904-7445+ pseudogene mitochondrial protein pseudogene region (ENSG00000284591) 31841 560799 chr4:575824-576240- NoOverlap chr4 575824 576240 - 2.40957838103 139 0.208839474541 1.87332802132 0.536250359707 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;575823;417;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575824-576240-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A575824-576240&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0669622663456 0.062722801191 0.572104562594 569613 570029 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;569612;417;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575824-576240-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A569613-570029&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGGGGGGGRRRMRAPAAAARAREDAGG*GGGRRSGRAAPGGGAGGGGGGGRRRARGVRAGSGAEDEVERPRGLRRALLLPPARLRAQRRRRRPQVLLVGLGAARGAVPPGGRRRRLLLRAAAGRRPLTARRRPALLRTPGRAPR Same 561787 chr4:575824-576240- 42992 42992 -11151 23 477 574887 576356 703 703;6245;31841;46311;49193;54444;54931;56343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:574887-576356&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.820143884892 1.05547657848 0.572621582734 0.2579 0.401714388489 0.170907194245 0.0507419210453 0.554077865344 22990 1278 1278;5393;22990;30652;31516;37018;38104;57044 -13.2481086331 0.5196 -15.3763798561 2.12827122302 -0.00085979621549 0.558128397484 35804 1826 1826;3252;19289;35804;46734;55036;61815;71601 0.0 0.0657694392057 chr19:7869033-7869544- protein-coding gene protein-coding gene ENSG00000273238 31910 482357 chr10:117542656-117542823- NoOverlap chr10 117542656 117542823 - 1.95815003025 56 0.821731299524 -0.00132320501975 1.95947323527 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117542655;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542656-117542823-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117542656-117542823&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0830116436422 0.0622610093138 0.683871861187 119302167 119302334 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119302166;168;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542656-117542823-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119302167-119302334&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FFLLCKRRAGRPKSKDNPWKCSLLHKLCKRFVSS*A*LVRGSHKQLPPKPGKWLDDWSLLLALR Same 484284 chr10:117542656-117542823- 30965 30965 945 23 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.494047619048 0.685314685315 -1.2825375 0.9547 -0.743267857143 -0.539269642857 -0.00889919910002 0.351868031134 46442 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -7.16112321429 0.8083 -5.44763571429 -1.7134875 -0.0187928704761 0.414215253722 47171 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000551288.5,ENST00000442245.5 NCintron,AntiUTR5 not annotated putative regulatory region 31911 520690 chr17:22522934-22522960- NoOverlap chr17 22522934 22522960 - 9.0289444526 9 0.573296711681 4.8027999666 4.226144486 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;22522933;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A22522934-22522960-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A22522934-22522960&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0798436768244 0.0622580287026 0.578119305682 22022260 22022286 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;22022259;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A22522934-22522960-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A22022260-22022286&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NILEEGDGWCVR Same 522104 chr17:22522934-22522960- 33714 33714 -1803 0 595 22519261 22522960 918 918;21987;31911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:22519261-22522960&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 1.6875 -1.40943333333 0.7686 -3.41935555556 2.00992222222 -0.0123246511352 0.39600515414 48706 8593 8593;22004;48706 -1.0695 0.9162 -8.70836666667 7.63886666667 0.0145135037856 0.620051979152 28944 2731 2731;2868;28944 0.0 0.0 pseudogene mitochondrially encoded NADH dehydrogenase 6 (MT-ND6) pseudogene (ENSG00000283879) 31965 520372 chr17:8222235-8222276- NoOverlap chr17 8222235 8222276 - 6.23709284408 14 0.621574077102 3.14051429927 3.0965785448 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8222234;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8222235-8222276-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8222235-8222276&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.113623630287 0.0619729123036 0.55532645635 8125553 8125594 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8125552;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8222235-8222276-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8125553-8125594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSPPVTRETGVRFPDGESTSSFETSIFLLSLNPSWSLGWSYK Same 521782 chr17:8222235-8222276- 32548 32548 -583 0 1341 8221594 8227025 2014 2014;17863;26203;31694;31965;37522;40474;40990;66443;67460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8221594-8227025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.690476190476 1.27272727273 -3.30745 0.9938 -12.5215642857 9.21411428571 0.0407822779208 0.951378558985 25351 2913 2913;4601;11583;16441;20948;21333;25351;28719;65647;67294 -3.30745 0.3106 -12.5215642857 9.21411428571 0.0284392938188 0.723458223625 24228 5986 5986;8484;15863;24228;24536;28672;31456;32683;52097;52689 0.0 0.0 ENST00000315707.3 NCintron not annotated 6 tRNAs 32008 492173 chr12:57604808-57604906+ NoOverlap chr12 57604808 57604906 + 3.54551215786 33 0.518689296259 1.66209997959 1.88341217827 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;57604807;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57604808-57604906%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A57604808-57604906&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0839184431434 0.0617574348198 0.585407377888 57998591 57998689 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;57998590;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57604808-57604906%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A57998591-57998689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVLSSLLPFSSACTPCNPPPFGVSPSLLLRPGPSSQQQPQSCDRQWRR*REVGEPGAPHTHRAPPGPR Same 494154 chr12:57604808-57604906+ 32718 32718 -710 15 115 57604808 57624781 137 137;276;887;2361;32008;57382;64750;68543 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:57604808-57624781&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.737373737374 0.767441860465 -0.1577 0.7848 -2.59806969697 2.44036969697 0.0232160976751 0.600495622753 31301 192 192;198;227;1040;9332;22257;31301;59213 -4.0666 0.4058 -6.65323636364 2.58663636364 0.0174085719992 0.559738407772 27890 667 667;1211;1268;2339;27890;29446;30873;52552 0.0 0.00357313351335 chr14:64727593-64727756+ ENST00000548198.5 UTR5 coding exon(s) SLC26A10 alternative final exon 32052 476455 chr1:244049813-244049884- NoOverlap chr1 244049813 244049884 - 2.97424586366 24 0.707022964828 -0.906679153442 3.8809250171 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244049812;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244049813-244049884-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244049813-244049884&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00848906917011 0.0614593467603 0.77831413344 244213115 244213186 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244213114;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244049813-244049884-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244213115-244213186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPGTAMGQQLPLHKSTPSRLATADP Same 478349 chr1:244049813-244049884- 34075 34075 -2023 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.625 1.03846153846 0.935545833333 0.9324 -6.01438333333 6.94992916667 0.224239287974 0.917850598697 7829 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -3.0339375 0.433 -11.2417 8.2077625 0.121113550743 0.755588684496 9756 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.263135261147 chr16:31464394-31465201+ ENST00000622512.1 AntiUTR5intron not annotated putative regulatory region 32176 547968 chr22:18994363-18994509+ NoOverlap chr22 18994363 18994509 + 3.49642245654 49 0.200106813153 1.56685714393 1.92956531261 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;18994362;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A18994363-18994509%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A18994363-18994509&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0462871738669 0.060743858085 0.67166353794 18981876 18982022 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;18981875;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A18994363-18994509%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A18981876-18982022&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DCPQQTWAEGTVSPLPLLPSLRSVSGTGGWSARGFKLLSRNRTHVVRQCSHTASFEVLMDVSRCEMGIFLWPLCPLSLPPNLPLLK Same 549388 chr22:18994363-18994509+ 31631 31631 545 0 6645 18985824 18997940 9432 9432;26026;32176;36938;37917 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:18985824-18997940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.632653061224 0.615348837209 -0.212289795918 0.0191 -0.0816795918367 -0.130610204082 0.0184874448547 0.404409086007 33193 27214 27214;29320;33193;33239;34296 24.7960877551 0.6083 2.96537142857 21.8307163265 1.06847787712 1.04325020018 175 Best 175 175;616;1654;2214;58981 0.0209493036686 chr1:109269694-109269820+ 0.645989395289 chr22:46378591-46378717- ENST00000438934.5,ENST00000440005.6 NC,NCintron pseudogene DiGeorge syndrome critical region gene 5 (non-protein coding) unprocessed pseudogene (ENSG00000237517) 32191 503811 chr14:35688390-35688578- NoOverlap chr14 35688390 35688578 - 2.37987615192 63 0.94641976116 1.93202229104 0.447853860874 ENST00000382366.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;35688389;189;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A35688390-35688578-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A35688390-35688578&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.275264544608 0.0606585684101 0.487419180043 36157596 36157784 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;36157595;189;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A35688390-35688578-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A36157596-36157784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLYMLFRSRRQMFPHRGRTECHQRLH*GICTVM*WAILEGKLQVSTNSVQSAKGERQHQFGLMQLK Same 505654 chr14:35688390-35688578- 29612 29612 2579 31 433 35688390 35689833 619 619;1406;1746;5165;32191 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:35688390-35689833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.492063492063 0.267452830189 -0.368814285714 0.9987 -1.11158888889 0.742774603175 0.130974780248 0.488944131429 13014 554 554;1849;2725;3200;13014 -7.5923015873 0.8906 -10.6674555556 3.07515396825 0.0827038960593 0.620701251818 13447 277 277;2355;2616;3577;13447 0.0 0.0 ENST00000382366.7,ENST00000307138.10,ENST00000554652.5 CDS,CDSintron,NCintron coding exon(s) RALGAPA1 intronic CDS 32199 493937 chr12:132134005-132134115+ NoOverlap chr12 132134005 132134115 + 1.95068649666 37 0.215649982782 -4.46950271565 6.4201892123 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132134004;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132134005-132134115%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132134005-132134115&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0100689666494 0.0606347455247 1.04956895889 132618550 132618660 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132618549;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132134005-132134115%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132618550-132618660&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QESGLASVAHRPRPTRKALFLPSPMSQVPKATGTAPVQAYMQVGAAHTVPLPHGHTGSGQWLLCSLLSLSYFQDLPPSSVEVR Same 495928 chr12:132134005-132134115+ 27131 27131 5068 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.657657657658 0.50762195122 4.03754594595 0.2911 -4.87307837838 8.91062432432 0.195274985832 1.06952961026 8974 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 7.07295945946 0.2939 -11.5635702703 18.6365297297 0.728282581725 1.0744412706 2715 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.534974581552 chr12:132069495-132069641+ 0.560251395033 chr12:132069495-132069641+ redundant PhyloCSF signals are accounted for elsewhere on the list 32302 502121 chr14:75278528-75278563+ NoOverlap chr14 75278528 75278563 + 6.49837499609 12 0.797152920831 3.00819994013 3.49017505596 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;75278527;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75278528-75278563%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A75278528-75278563&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.143473366429 0.0601074135084 0.577553023974 75745231 75745266 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;75745230;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75278528-75278563%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A75745231-75745266&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MSILGHLRQQVSTAFPCSPGGSHPR Same 504023 chr14:75278528-75278563+ 31002 31002 1300 0 456 75277155 75281681 653 653;2707;13175;15627;32302;36623;37128;61784;65414 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:75277155-75281681&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.615384615385 -0.300933333333 0.9512 -6.44754166667 6.14660833333 0.00457597252348 0.758759605707 39238 3768 3768;6703;12830;13388;17137;39238;49903;64236;73058 -6.50760833333 0.5719 -10.6670416667 4.15943333333 -0.0326129612755 0.492162699277 59433 9152 9152;14942;21009;33752;35396;56305;59433;66250;68586 0.0 0.0 not annotated putative regulatory region 32313 546503 chr21:16588649-16588756+ NoOverlap chr21 16588649 16588756 + 3.31501674155 36 0.820709035884 3.13185288053 0.18316386102 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;16588648;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16588649-16588756%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A16588649-16588756&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.316993683315 0.0600386869566 0.371512174992 17960969 17961076 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;17960968;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16588649-16588756%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A17960969-17961076&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CFASPLAVYLYACVRARARSGIRV*PRGGGGV*VRGG*KPVSQ*EAKVRWR Same 547919 chr21:16588649-16588756+ 34064 34064 -1751 25 5231 16588460 16588760 7260 7260;14761;22254;32313 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:16588460-16588760&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.638888888889 1.14893617021 -0.961541666667 0.9775 -1.14914444444 0.187602777778 -0.00572609002566 0.395754600842 44551 3953 3953;23524;44551;65667 -11.4314888889 0.6414 -7.97666666667 -3.45482222222 -0.0639105618619 0.295158055101 73603 14629 14629;66878;69840;73603 0.0 0.0 ENST00000602323.1,ENST00000400178.6 NC,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 32325 505125 chr14:93927274-93927414- NoOverlap chr14 93927274 93927414 - 1.6240999724 47 0.715178343877 -1.3816468145 3.0057467869 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;93927273;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A93927274-93927414-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A93927274-93927414&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.094557196626 0.0599693532141 0.794770795607 94393620 94393760 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;94393619;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A93927274-93927414-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A94393620-94393760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPTADLGQAPAQPAELRPAGSSCATLEWAEWRTTPRSWGAPQANQER Same 506972 chr14:93927274-93927414- 34714 34714 -2389 0 3263 93926359 93927414 4529 4529;5519;7892;32325;72262 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:93926359-93927414&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.687943262411 0.479591836735 -1.63104255319 0.9197 -3.8443212766 2.2132787234 0.0278617410513 0.600348611596 29537 8144 8144;12586;16200;29537;58582 -9.18984680851 0.6948 -13.015306383 3.82545957447 0.0204433821485 0.628802112262 26837 8416 8416;20263;26837;36661;44192 0.0 0.0 ENST00000556222.1,ENST00000267594.5,ENST00000557719.1 AntiUTR5,AntiCDSintron,AntiUTR5intron not annotated potentially spurious 32440 479642 chr10:129871007-129871105+ NoOverlap chr10 129871007 129871105 + 1.88501214981 33 0.978139370357 -2.36543332718 4.25044547699 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129871006;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129871007-129871105%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129871007-129871105&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.116193304262 0.0593573579008 0.877480168165 131669271 131669369 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131669270;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129871007-129871105%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131669271-131669369&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MSCNCAWDVQMAG*YSS**DYTFTSPRAICSL*LAKAPQPGFSCPYCINLTALR Same 481547 chr10:129871007-129871105+ 37480 37480 -5040 19 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.525252525253 0.45 -0.0977727272727 0.9786 -3.07205151515 2.97427878788 0.114746689519 0.650166198598 14415 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -3.22214848485 0.9187 -6.22086060606 2.99871212121 0.0726167191046 0.580200455215 14767 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 32480 475837 chr1:214030725-214030778- NoOverlap chr1 214030725 214030778 - 4.03009452754 18 0.814396039436 -0.0308110283481 4.06090555588 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;214030724;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214030725-214030778-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A214030725-214030778&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0742583107172 0.0590833027116 0.74241798573 214204068 214204121 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214204067;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214030725-214030778-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214204068-214204121&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAVTGSVLAGPNLAKRSWQLNECHR Same 477727 chr1:214030725-214030778- 31866 31866 614 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.488687782805 -0.85895 0.9945 -1.05437777778 0.195427777778 -0.0267786055162 0.311437435186 58552 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -5.65996111111 0.7936 -8.66057777778 3.00061666667 -0.0147681528237 0.491693956428 44139 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000607258.2,ENST00000261454.8 NC,AntiCDSintron not annotated potentially spurious 32533 476458 chr1:244052131-244052187- NoOverlap chr1 244052131 244052187 - 4.03676305868 19 0.999220986777 0.0202263530932 4.01653670559 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244052130;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244052131-244052187-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244052131-244052187&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0628920657197 0.0587942702603 0.746345149765 244215433 244215489 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244215432;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244052131-244052187-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244215433-244215489&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LWPYGSCCPDKEIKNRGVRLQLSGQFR Same 478352 chr1:244052131-244052187- 40709 40709 -8176 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.456140350877 0.372549019608 -0.3652 1.0 -0.720810526316 0.355610526316 -0.0105878618362 0.331057001949 47494 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -0.502952631579 0.931 -0.807321052632 0.304368421053 0.0201383469918 0.397138141296 26945 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0 ENST00000358704.4,ENST00000622512.1 AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 32588 715777 chr7:27185226-27185321+ Extension chr7 27185226 27185321 + 1.96455004811 32 0.930231937133 -2.09599691257 4.06054696068 chr7:27185214-27185321+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27185225;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27185226-27185321%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27185226-27185321&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0929017103874 0.0584898227046 0.852457490034 27224845 27224940 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27224844;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27185226-27185321%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27224845-27224940&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EVEIWRRKLTWKSIPILSREVLVM*PDVEIDK Same 716375 chr7:27185226-27185321+ 33691 33691 -1103 7 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.46875 0.605042016807 0.20830625 1.0 -0.381121875 0.589428125 0.0578736757693 0.426831071249 21603 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -7.1222875 0.9279 -6.7520125 -0.370275 -0.0236795161333 0.419239490442 51282 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000522863.1,ENST00000520360.5 NC,NCintron not annotated putative regulatory region 32639 539840 chr2:110033857-110033913- NoOverlap chr2 110033857 110033913 - 4.53821580034 19 0.518935241514 0.806863100905 3.73135269943 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110033856;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110033857-110033913-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110033857-110033913&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0456259561423 0.0581657088528 0.708126343106 110791434 110791490 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110791433;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110033857-110033913-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110791434-110791490&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAQDISWCLPRPPGLFCATTGQAAPGGPYAPGK Same 541200 chr2:110033857-110033913- 33145 33145 -506 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.701754385965 0.145780051151 9.23595789474 0.7944 3.16159473684 6.07436315789 0.388104575194 0.806977014373 4153 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 19.0161894737 0.7476 6.16535789474 12.8508315789 0.789473322003 0.846799835412 2516 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 32713 540155 chr2:131386275-131386316- NoOverlap chr2 131386275 131386316 - 5.78152861127 14 0.400601641435 -0.152621472288 5.93415008356 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131386274;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131386275-131386316-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131386275-131386316&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00402835498427 0.0577939804919 0.886029178725 132143848 132143889 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;132143847;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131386275-131386316-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A132143848-132143889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IAIYFIL*SG*ATYSNYD Same 541517 chr2:131386275-131386316- 32098 32098 615 7 643 131370351 131386316 988 988;1634;5892;16115;21323;24702;26053;30266;32713 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131370351-131386316&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.357142857143 0.0 24.1001357143 0.6388 7.39667142857 16.7034642857 0.397673184292 0.99194271995 4039 1235 1235;1643;1841;2007;2369;2922;4039;4272;46168 68.9981071429 0.8734 27.5542571429 41.44385 0.957429607489 0.94296540212 1734 939 939;1359;1734;1945;2052;2301;2444;3194;23136 0.946946617238 chrM:3307-4262+ 0.977864941686 chrM:3307-4262+ pseudogene extension mitochondrial pseudogene region extended (e.g. ENSG00000284003) 32799 476459 chr1:244052174-244052209- NoOverlap chr1 244052174 244052209 - 6.94536654154 12 0.998766562397 5.48941660921 1.45594993234 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244052173;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244052174-244052209-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244052174-244052209&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.175886256505 0.0572883904712 0.308952415287 244215476 244215511 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244215475;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244052174-244052209-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244215476-244215511&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLIQLTVAIWQLLPR None NA NA 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.0 1.89951666667 1.0 1.20194166667 0.697575 0.00604844419547 0.30340679917 38562 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 2.687375 0.9324 1.87575833333 0.811616666667 0.0303788304673 0.365639347251 23640 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0 ENST00000358704.4,ENST00000622512.1 AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 32931 490585 chr12:7621364-7621432+ NoOverlap chr12 7621364 7621432 + 4.07244775477 23 0.232905749002 -1.40521734953 5.4776651043 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;7621363;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7621364-7621432%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A7621364-7621432&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00396077684779 0.0566126307222 0.927591259588 7773960 7774028 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;7773959;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7621364-7621432%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A7773960-7774028&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSTTNYIQHQKLIFI*SVLITAVLLLLSLLVLALALLHLCYSQT Same 492561 chr12:7621364-7621432+ 32024 32024 907 6 1000 7620539 7637633 1528 1528;3369;23912;30341;31797;32931;38172;38567;44054;46877;50926 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:7620539-7637633&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.304347826087 0.627272727273 -1.93712173913 0.083 -2.42323913043 0.486117391304 0.0205156029581 0.361262336339 32399 27370 27370;27482;29856;29976;30397;31757;32126;32399;32690;35677;37405 46.4172608696 0.6784 5.87027391304 40.5469869565 1.02420157995 1.01197759065 714 310 310;676;714;1056;1511;1634;1765;1772;2213;2416;4434 0.0 0.789385493643 chrM:5904-7445+ pseudogene mitochondrial protein pseudogene region (ENSG00000284591) 32944 526071 chr18:56873698-56873754- NoOverlap chr18 56873698 56873754 - 3.42910527556 19 0.876707103075 -1.41196845864 4.8410737342 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;56873697;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A56873698-56873754-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A56873698-56873754&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00884693759582 0.0565492660713 0.841570374959 54540929 54540985 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;54540928;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A56873698-56873754-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A54540929-54540985&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLIQDCFIPFNLVSSPAWMSTALVMDFYSNVLKQALK Same 527515 chr18:56873698-56873754- 32769 32769 175 0 17506 56873607 56873950 31192 31192;32944;35519;70244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:56873607-56873950&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.456140350877 0.0 -0.210021052632 0.9986 -1.54496842105 1.33494736842 0.00686103892972 0.414566959545 38183 15694 15694;38183;55401;69108 -1.31521578947 0.7538 -3.66323157895 2.34801578947 0.0330303454499 0.481210871565 22856 Best 22856 22856;27950;34366;55463 0.0 0.0 ENST00000586391.1,ENST00000254442.7,ENST00000589935.1 NC,AntiCDSintron,AntiUTR5intron not annotated potentially spurious 32989 518059 chr17:48593709-48593873+ NoOverlap chr17 48593709 48593873 + 2.01353809942 55 0.901162321313 0.33697450906 1.67656359036 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48593708;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593709-48593873%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48593709-48593873&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.120582987219 0.0563250792519 0.644194317105 46671071 46671235 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46671070;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593709-48593873%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46671071-46671235&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FVDRGRYNPVLHDL*CINEL*RCTVLRFAMYAAKYGGGVGRGVGGVRESRAFVDQS Same 519460 chr17:48593709-48593873+ 30704 30704 2285 20 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.490909090909 1.08552631579 -0.991301818182 0.9931 -1.47947272727 0.488170909091 0.0531911167602 0.453966657635 22497 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -10.6887254545 0.871 -5.53111818182 -5.15760727273 -0.0678577847739 0.270796285736 73692 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000239151.5,ENST00000552000.2 NCintron,AntiUTR5,AntiNCintron not annotated putative regulatory region 32992 570018 chr5:176148043-176148111- NoOverlap chr5 176148043 176148111 - 3.61292166911 23 0.279697871366 -2.26750437591 5.88042604502 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;176148042;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176148043-176148111-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A176148043-176148111&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00199329582947 0.0563100468838 0.960753753284 175575046 175575114 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;175575045;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176148043-176148111-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A175575046-175575114&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AILDFGDWSCGGWKSLPIKALNWTHTTYQSS Same 571036 chr5:176148043-176148111- 30517 30517 2475 0 6143 176146963 176156969 8635 8635;13435;25692;32992;35007;45549;51680 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:176146963-176156969&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.492753623188 0.0 13.2320652174 0.7155 0.151756521739 13.0803086957 0.745412845925 1.05279948776 1893 17 17;170;306;1893;3127;16509;16641 24.5732086957 0.6408 1.1875826087 23.385626087 1.0461794744 1.04724015764 388 11 11;134;388;800;3031;3612;16194 0.966509155367 chr18:13067831-13067956+ 0.981855565069 chr18:13067831-13067956+ ENST00000515403.5,ENST00000510029.1 NC,AntiNCintron pseudogene centrosomal protein 192kDa (CEP192) pseudogene (ENSG00000283559) 33017 495349 chr12:52721655-52721750- NoOverlap chr12 52721655 52721750 - 2.46789067984 32 0.45241521706 -1.08750624955 3.55539692938 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52721654;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52721655-52721750-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52721655-52721750&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00636977583566 0.0561664568421 0.795783056174 53115439 53115534 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;53115438;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52721655-52721750-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A53115439-53115534&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSGGAYCQTFSSHLAVVSGHSWISSIMSSFASSSGRAGGGWVCCLCHDGGR Same 497347 chr12:52721655-52721750- 32681 32681 336 0 536 52721165 52729639 810 810;1910;17559;33017;63856 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52721165-52729639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.0 12.786396875 0.8849 2.164746875 10.62165 0.969430710499 1.05490633722 969 67 67;82;632;969;1304 22.9654375 0.54 4.902565625 18.062871875 1.08115410587 1.0134792196 120 Best 120 120;301;726;749;1933 0.298122097351 chr12:52776692-52777291- 0.341820938834 chr12:52795398-52796042- pseudogene extension KRT125P (ENSG00000258036) and KRT126P (ENSG00000257402) extended, i.e. two distinct keratin pseudogenes within the same genomic window 33066 582009 chr7:100895788-100895952- NoOverlap chr7 100895788 100895952 - 3.12787454399 55 0.407616193984 2.08869089389 1.0391836501 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100895787;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100895788-100895952-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100895788-100895952&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0938239538538 0.0558779882594 0.564047536567 100493409 100493573 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100493408;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100895788-100895952-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100493409-100493573&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGAGAETVGGGGRGRCEARRGCVRGAGGGGCQSRLSLRRGTSAASSSRRGPARPGSAASGESPSPPGTLLK Same 582969 chr7:100895788-100895952- 32811 32811 255 0 402 100882699 100896048 564 564;2139;2309;3733;10134;33066;33794;47001;47408;61791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100882699-100896048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.812121212121 0.786070780399 -1.09048 0.5846 -1.68599636364 0.595516363636 -0.0182473014819 0.462302301684 52932 1085 1085;2762;12277;14242;15089;33604;35393;48431;52932;53395 -6.60149818182 0.3193 -5.99784545455 -0.603652727273 -0.0364953300427 0.461701753656 62610 1829 1829;3172;9515;15507;19629;23787;40273;49567;60478;62610 0.0 0.00810896279567 chr16:67247210-67247410- ENST00000302913.8,ENST00000428317.5 UTR5,UTR5intron pseudo-exon UFSP1 is a retrogene that has apparently evolved to use a downstream ATG, so this is 5' pseudo-exon sequence 33136 496464 chr12:95405471-95405503- NoOverlap chr12 95405471 95405503 - 5.62640900504 11 0.778113013865 -1.36650009589 6.99290910092 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;95405470;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95405471-95405503-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A95405471-95405503&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00679135073383 0.0555062263534 0.945357851797 95799247 95799279 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;95799246;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95405471-95405503-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A95799247-95799279&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IIIVNEYQFLNLDCIYPSGHLAVCQSYSDLPSGGVYTSVFSDLPNPVILGTFTPFGCGSISFPK Same 498466 chr12:95405471-95405503- 32665 32665 471 0 1078 95405372 95408124 1638 1638;2059;7365;33136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:95405372-95408124&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.545454545455 0.0 7.03867272727 0.9036 2.46314545455 4.57552727273 0.134965252731 0.606699273752 12683 2635 2635;6398;9658;12683 12.5725 0.5989 0.8428 11.7297 0.413926685682 0.766967894012 3887 2962 2962;3484;3887;4565 0.0 0.0 ENST00000548194.1 NC pseudogene unitary pseudogene ENSG00000257943 33173 481844 chr10:101322790-101323044- NoOverlap chr10 101322790 101323044 - 1.49690708202 85 0.699223495303 -0.0117199981914 1.50862708022 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;101322789;255;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A101322790-101323044-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A101322790-101323044&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0785518917124 0.055327333143 0.61881645299 103082547 103082801 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;103082546;255;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A101322790-101323044-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A103082547-103082801&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APPALPPPAPLPDRCLRAPGRS*GDEMQQFFMNISFLLATRRKLDGVLHSGNKRDMSPRRWPIGWRG*SCREFHYCFYIDRISSVTASLIVFH Same 483761 chr10:101322790-101323044- 22292 22292 10881 40 5961 101322790 101331146 8363 8363;24314;33173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:101322790-101331146&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.509803921569 0.728571428571 -1.34222 0.9727 -1.74272588235 0.400505882353 0.116025011498 0.410668624205 14302 Best 14302 14302;21427;38701 -6.74800117647 0.7272 -8.07824352941 1.33024235294 0.102830081024 0.549795466728 11247 Best 11247 11247;17236;33590 0.0 0.0 ENST00000450669.2 NC not annotated potentially spurious 33200 496187 chr12:70446218-70446253- NoOverlap chr12 70446218 70446253 - 6.67610834539 12 0.353115383637 -0.511566776782 7.18767512217 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70446217;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70446218-70446253-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70446218-70446253&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00804527293679 0.0551850024632 0.956819349038 70839998 70840033 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70839997;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70446218-70446253-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70839998-70840033&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FVSIVVSEPLPHATTVFTDDSGKTKKAGIVCK Same 498187 chr12:70446218-70446253- 32363 32363 837 0 155 70445357 70448659 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.0 -2.65774166667 0.1186 -2.83194166667 0.1742 0.0315412028004 0.278171172608 28123 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 11.2637666667 0.1729 -8.55216666667 19.8159333333 0.202305231474 1.00485461674 6184 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 33268 472690 chr1:62999370-62999405- NoOverlap chr1 62999370 62999405 - 5.17390855153 12 0.939604791333 -1.22698332866 6.40089188019 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;62999369;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62999370-62999405-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A62999370-62999405&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0200669590036 0.0549069282375 0.913175324046 63465041 63465076 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;63465040;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62999370-62999405-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A63465041-63465076&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") INILDGAMMNPLW*WAPISIITSISISLTAE Same 474569 chr1:62999370-62999405- 34470 34470 -1202 2 668 62997933 63000329 1026 1026;13743;18049;27623;33268;34189;37177;59194;68808 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:62997933-63000329&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.527777777778 0.428571428571 -0.641391666667 1.0 -1.08574166667 0.44435 -0.0348962788579 0.291185051251 63612 6220 6220;8200;13946;16945;28973;32781;63612;68420;69109 -0.364566666667 0.9359 -0.5911 0.226533333333 -0.00967129471504 0.344824504503 40736 6223 6223;11538;12991;22844;28460;29330;40736;45828;71146 0.0 0.0 not annotated putative regulatory region 33341 564844 chr5:93602278-93602367+ NoOverlap chr5 93602278 93602367 + 2.34023000201 30 0.776210167595 -1.04935325881 3.38958326081 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;93602277;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93602278-93602367%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A93602278-93602367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0165499929426 0.0545418509217 0.764042402332 92937984 92938073 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;92937983;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A93602278-93602367%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A92937984-92938073&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSKPDRHKYSGHYVCSLTPVCQTPTDSTRR Same 565832 chr5:93602278-93602367+ 34553 34553 -1212 0 3451 93580856 93603078 4787 4787;9346;11338;11696;13238;18999;26452;26493;26701;27232;28622;33341;37073;38483;40428;50861;66649 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:93580856-93603078&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.910931174089 -2.05597 0.9856 -6.39620333333 4.34023333333 0.0569734631842 0.733286066769 21763 5022 5022;8932;13700;14826;16126;17841;21763;24145;29213;36125;41771;51124;51917;55188;59615;61664;73562 -11.6779933333 0.4659 -15.2304566667 3.55246333333 -0.0402727783856 0.545028103969 65452 5814 5814;6596;9096;16343;18747;24073;27385;33273;39453;40451;41327;42891;44550;46827;53732;65452;67088 0.0 0.0 ENST00000623223.1 NC not annotated potentially spurious 33342 530518 chr19:28687812-28687844- NoOverlap chr19 28687812 28687844 - 7.05055462908 11 0.354211836839 -2.27131831646 9.32187294554 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28687811;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28687812-28687844-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28687812-28687844&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0106850243246 0.0545412012208 1.03668677684 29178719 29178751 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29178718;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28687812-28687844-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29178719-29178751&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIVIISNCNLQGAGIEIYPGSK Same 531982 chr19:28687812-28687844- 30923 30923 2419 0 627 28683074 28687844 962 962;19139;33342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28683074-28687844&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.454545454545 0.0 9.55599090909 0.7237 -3.31473636364 12.8707272727 0.26479867665 1.03001946121 6495 2512 2512;3937;6495 24.1207181818 0.6151 0.0656909090909 24.0550272727 0.855937544115 1.01625412154 2292 1113 1113;2292;9825 0.833353538537 chr16:46584003-46584089- 0.86560199635 chr16:46584003-46584089- ENST00000592347.5 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 33483 588878 chr9:35829371-35829445+ NoOverlap chr9 35829371 35829445 + 4.04878390193 25 0.766418554971 3.82890798897 0.219875912964 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35829370;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35829371-35829445%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35829371-35829445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.255147485999 0.0537879884038 0.304486336371 35829368 35829442 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35829367;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35829371-35829445%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35829368-35829442&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWGAEPRASSASAPRWPVRPRPRPGPWPSPCPGPSSYPNPR None NA NA 0 277 35829249 35842438 362 362;425;536;1007;2241;12378;33483;41023;50301;66958 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35829249-35842438&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.866666666667 0.78125 -2.424444 0.9285 0.861484 -3.285928 -0.0609326639231 0.0945524877785 72554 527 527;571;572;815;1277;3226;54814;57000;63888;72554 -13.995148 0.5605 -9.03476 -4.960388 -0.0316288675005 0.198219836555 58586 753 753;986;1017;1241;1441;19083;51774;53783;58586;72919 0.0 0.192163709582 chr19:39515213-39516021+ ENST00000439587.6,ENST00000377991.8,ENST00000464519.6 UTR5,UTR5intron,NCintron coding exon(s) TMEM8B 5' extension by 5 exons 33532 479927 chr10:8051983-8052060- NoOverlap chr10 8051983 8052060 - 2.78585380545 26 0.543972979794 -1.12569622122 3.91155002667 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8051982;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8051983-8052060-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8051983-8052060&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00796841841318 0.0535531284911 0.797212987668 8093946 8094023 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8093945;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8051983-8052060-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8093946-8094023&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WPAPASLADATLGLTSRAQPRSPEHRAAGK Same 481835 chr10:8051983-8052060- 34977 34977 -1445 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.75641025641 0.806896551724 -1.17600769231 0.9336 -5.20035769231 4.02435 0.0450844237841 0.694286476717 24286 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -4.34075384615 0.587 -8.57385769231 4.23310384615 0.0495306954941 0.596990907705 18833 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 ENST00000355358.1,ENST00000418270.1 NCintron,AntiNCintron not annotated putative regulatory region 33559 500746 chr14:22486248-22486277+ NoOverlap chr14 22486248 22486277 + 7.30766009092 10 0.971255054551 2.69205006361 4.61561002731 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22486247;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22486248-22486277%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22486248-22486277&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.105280849299 0.0534486897839 0.678059577029 22955236 22955265 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22955235;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22486248-22486277%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22955236-22955265&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLQCSANAGGTSYGKLTFGQGTILTVHPSK None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.0 7.80526 0.9744 1.01376 6.7915 0.26254807448 0.768511903367 6572 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 9.96263 0.4147 -1.39895 11.36158 0.199996020691 0.754320461868 6246 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390486.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 33579 556705 chr3:125014810-125014842- NoOverlap chr3 125014810 125014842 - 5.97421814095 11 0.610972623928 -1.71564524824 7.68986338919 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;125014809;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A125014810-125014842-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A125014810-125014842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00714969332837 0.0533437166935 0.985468588436 124733654 124733686 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;124733653;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A125014810-125014842-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A124733654-124733686&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVTLTNTSMSTTSGEAGSPAAAMHQETEGASLHVNVTDDMGLVSR Same 557674 chr3:125014810-125014842- 35318 35318 -1739 0 520 125014720 125014926 776 776;19289;33579 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:125014720-125014926&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.69696969697 0.25 1.18857272727 0.837 -4.52890909091 5.71748181818 -0.00110699999813 0.717264456705 42047 1326 1326;5514;42047 -1.38885454545 0.3545 -6.28306363636 4.89420909091 -0.0125081920202 0.525501880672 42528 2620 2620;6004;42528 0.0 0.0 ENST00000477536.1,ENST00000311127.8 NC,CDSintron coding exon(s) HEG1 cassette exon 33611 513693 chr16:28974152-28974178- NoOverlap chr16 28974152 28974178 - 8.86374444432 9 0.33987775828 0.438555637995 8.42518880632 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;28974151;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A28974152-28974178-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A28974152-28974178&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00260870062783 0.053138972077 0.972097514966 28985473 28985499 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;28985472;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A28974152-28974178-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A28985473-28985499&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EASPPAAPGAYFSSLQSGLEPLRPPVGFCR Same 515346 chr16:28974152-28974178- 33354 33354 257 0 18440 28974152 28974178 Best 33611 33611 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:28974152-28974178&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.740740740741 0.89010989011 -0.967688888889 0.6952 -13.1686333333 12.2009444444 0.0347968252914 1.02583662305 27036 Best 27036 27036 -0.967688888889 0.2173 -13.1686333333 12.2009444444 0.0115941723002 0.79568539513 30076 Best 30076 30076 0.0 0.0 ENST00000567209.2 NC not annotated potentially spurious 33643 547917 chr22:17046358-17046447+ NoOverlap chr22 17046358 17046447 + 3.17635662804 30 0.10659952697 -0.343503357967 3.51985998601 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;17046357;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A17046358-17046447%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A17046358-17046447&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0385966055806 0.0529949854832 0.777854100139 17527248 17527337 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;17527247;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A17046358-17046447%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A17527248-17527337&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HWATEVQRALVDHPVVAESATVSSPDPIQGEVR Same 549331 chr22:17046358-17046447+ 33937 33937 -294 0 7836 17044888 17047449 11264 11264;33643;41243 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:17044888-17047449&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.622222222222 0.355731225296 0.3196 0.0395 -1.78047333333 2.10007333333 0.0324957285641 0.557187720512 27793 Best 27793 27793;29910;31309 17.06269 0.3118 3.86887666667 13.1938133333 0.745253431629 0.92392271199 2648 2371 2371;2648;3089 0.0 0.57578273078 chr12:7324499-7324598+ ENST00000414401.5 NCintron pseudogene cat eye syndrome chromosome region, candidate 7 unprocessed pseudogene (ENSG00000237438) 33668 511824 chr16:54934765-54934824+ NoOverlap chr16 54934765 54934824 + 3.56462005973 20 0.918448920424 -0.502585053444 4.06720511317 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54934764;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54934765-54934824%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54934765-54934824&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0419095789888 0.0529101364739 0.764383829899 54968677 54968736 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54968676;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54934765-54934824%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54968677-54968736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PNYFQSVSCFMQSNQLVNFANEFDFMPDLALITISR Same 513465 chr16:54934765-54934824+ 34474 34474 -806 0 496 54928752 54938880 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.383333333333 1.0 -0.714885 0.9973 -2.5782 1.863315 0.00500063519885 0.466703110229 39029 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -4.14584 0.8007 -5.836445 1.690605 -0.00543504067526 0.455041133593 38272 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.0 not annotated putative regulatory region 33765 512647 chr16:85169289-85169495+ NoOverlap chr16 85169289 85169495 + 3.58622756492 69 0.239772530001 4.04305942961 -0.456831864689 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;85169288;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85169289-85169495%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A85169289-85169495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.118269760071 0.0524132592356 0.381410369704 85202895 85203101 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;85202894;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85169289-85169495%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A85202895-85203101&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSRPGPAAAAAAAAAAAAFRARSPRRRLGPRRRRGVLGRPGGAPLRGAVRPRPRRPPAAKLCGAHTCSKLGAAAAAWAGAEGGPGRAGAR Same 514292 chr16:85169289-85169495+ 38090 38090 -4325 0 247 85169288 85171795 315 315;1225;4037;33765;48559;52041;63398 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:85169288-85171795&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.859903381643 1.12727963526 0.0689391304348 0.2051 0.179786956522 -0.110847826087 -0.00481845985377 0.411369097462 44051 686 686;1182;1519;35870;37426;44051;65700 -4.71413623188 0.3669 -4.1281884058 -0.585947826087 0.00169662835094 0.473725061862 34536 912 912;1310;2378;23905;34536;69575;73658 0.0 0.187990253577 chr2:73291457-73292781- coding exon(s) GSE1 5' extension 33773 484363 chr11:47326311-47326373+ NoOverlap chr11 47326311 47326373 + 3.65434767803 21 0.881262284421 0.534571494375 3.11977618365 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;47326310;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A47326311-47326373%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A47326311-47326373&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.102999600859 0.0523499107619 0.656229766129 47347862 47347924 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;47347861;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A47326311-47326373%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A47347862-47347924&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQSEGSFAPVPALCAGGGCMEG Same 486305 chr11:47326311-47326373+ 33199 33199 574 0 491 47323975 47326737 725 725;7074;33773;69571;73021 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:47323975-47326737&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.68253968254 0.570135746606 1.77765714286 0.9863 0.0639857142857 1.71367142857 0.0920255738006 0.466230158764 16774 8028 8028;16774;35166;46166;60522 -1.9081952381 0.7953 -3.22342380952 1.31522857143 0.0201876559392 0.450060007498 26924 1626 1626;8192;19804;26924;68134 0.0 0.0 ENST00000311027.9,ENST00000460452.5 CDSintron,NCintron pseudogene Mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) unprocessed pseudogene (ENSG00000283338) 33783 561231 chr4:17884750-17884833- NoOverlap chr4 17884750 17884833 - 3.09955717836 28 0.870157712891 1.22640702873 1.87315014963 ENST00000382224.5,ENST00000382226.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17884749;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17884750-17884833-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17884750-17884833&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.154225377985 0.0523033988446 0.550922341948 17886373 17886456 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17886372;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17884750-17884833-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17886373-17886456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIIKEWTLPFHSCVRVSHASVYHRFIPSIQETTQK Same 562222 chr4:17884750-17884833- 33288 33288 495 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.197647058824 -0.438532142857 0.9982 -1.34813571429 0.909603571429 0.0237525494424 0.43171827225 31117 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 -1.70895 0.9026 -8.3155 6.60655 0.1435557066 0.715532703828 8337 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.00221458409166 chr10:96954953-96955922+ ENST00000382224.5,ENST00000326877.8,ENST00000510121.5 CDS,CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 33792 547192 chr21:8396485-8396583- NoOverlap chr21 8396485 8396583 - 4.67214244423 33 0.210173143659 2.92623336026 1.74590908397 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8396484;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396485-8396583-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8396485-8396583&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0286171481281 0.0522219590719 0.565019251662 156878 156976 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156877;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396485-8396583-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156878-156976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPEAGARRRTTPRRPAGRRRGHANPGAAATGAAGRAAGR Same 548596 chr21:8396485-8396583- 34398 34398 -606 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.888888888889 1.33575505968 3.46595757576 0.2297 1.6445030303 1.82145454545 0.0471153434149 0.563907105951 23799 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 4.24912424242 0.2825 1.42584242424 2.82328181818 0.119585023914 0.582011043035 9860 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.102736903433 chr12:56599129-56599358- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 33793 547288 chr21:8440704-8440802- NoOverlap chr21 8440704 8440802 - 4.67214244423 33 0.210173143659 2.92623336026 1.74590908397 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8440703;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440704-8440802-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8440704-8440802&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0286171481281 0.0522219590719 0.565019251662 156878 156976 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156877;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440704-8440802-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156878-156976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPEAGARRRTTPRRPAGRRRGHANPGAAATGAAGRAAGR Same 548691 chr21:8440704-8440802- 34399 34399 -606 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.888888888889 1.33575505968 5.23695757576 0.2482 2.44882121212 2.78813636364 0.0901999142661 0.656184899964 17007 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 10.0380151515 0.3204 5.75618181818 4.28183333333 0.327044899752 0.639209022551 4379 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0171311717583 chr19:1042662-1042826+ not annotated SSU-rRNA_Hsa 33794 582010 chr7:100895964-100895999- NoOverlap chr7 100895964 100895999 - 6.58962500095 12 0.498835227995 1.24562504888 5.34399995208 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100895963;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100895964-100895999-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100895964-100895999&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.028229972662 0.0522148596862 0.798122272336 100493585 100493620 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100493584;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100895964-100895999-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100493585-100493620&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEVATRESGEGRGR Same 582970 chr7:100895964-100895999- 34728 34728 -934 0 402 100882699 100896048 564 564;2139;2309;3733;10134;33066;33794;47001;47408;61791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100882699-100896048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.861111111111 0.782608695652 -2.79741666667 0.6539 -4.322075 1.52465833333 -0.0119402112784 0.383158057939 48431 1085 1085;2762;12277;14242;15089;33604;35393;48431;52932;53395 -10.8130583333 0.3808 -14.3758916667 3.56283333333 -0.0217491807323 0.445670398289 49567 1829 1829;3172;9515;15507;19629;23787;40273;49567;60478;62610 0.0 0.0 ENST00000428317.5 UTR5intron pseudo-exon UFSP1 is a retrogene that has apparently evolved to use a downstream ATG, so this is 5' pseudo-exon sequence 33847 531733 chr19:48498307-48498405- NoOverlap chr19 48498307 48498405 - 2.84160007582 33 0.55369857883 0.308415256949 2.53318481887 ENST00000270238.3,ENST00000600059.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48498306;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48498307-48498405-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48498307-48498405&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0255144982699 0.0519752117146 0.673899176337 49001564 49001662 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49001563;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48498307-48498405-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49001564-49001662&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQEGGERPREQRESPGPEQGPDSPGQRETSPKPEPPSER Same 533208 chr19:48498307-48498405- 35858 35858 -2011 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.656565656566 0.474137931034 3.58061818182 0.8807 -2.53066969697 6.11128787879 0.408861943227 0.924618319034 3908 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -11.5866666667 0.7219 -15.9672484848 4.38058181818 -0.021309924875 0.592649674415 49177 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.144270356036 chr17:81120201-81122823- ENST00000270238.3 CDS coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 33864 491873 chr12:54262535-54262648+ NoOverlap chr12 54262535 54262648 + 2.35538680695 38 0.999613304261 0.147731631994 2.20765517495 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;54262534;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A54262535-54262648%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A54262535-54262648&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0754887169797 0.0518933721783 0.659126953062 54656319 54656432 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;54656318;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A54262535-54262648%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A54656319-54656432&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QSQIRSWQG*RHSSDGMCLILTLKLQICSGAAVRNEKCTQTSEGT Same 493851 chr12:54262535-54262648+ 35538 35538 -1674 8 3518 54259577 54262648 4874 4874;23728;33864 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:54259577-54262648&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.429824561404 0.196551724138 -1.81111052632 0.9926 -3.92161315789 2.11050263158 0.0215392195702 0.569124442687 31997 15707 15707;31997;38827 -7.24897894737 0.435 -8.96252368421 1.71354473684 -0.022976168436 0.526728867565 50672 13904 13904;48702;50672 0.0 0.0 ENST00000547177.1,ENST00000209875.8 NC,AntiUTR5intron not annotated potentially spurious 33869 534544 chr2:104434362-104434436+ NoOverlap chr2 104434362 104434436 + 3.58756006241 25 0.963996032654 2.05390396357 1.53365609884 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;104434361;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A104434362-104434436%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A104434362-104434436&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.175886384037 0.0518690025195 0.47952957821 105050820 105050894 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;105050819;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A104434362-104434436%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A105050820-105050894&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLFLLQFHMQSMHQPHPCYLLKQSF*NPIWGQCR Same 535896 chr2:104434362-104434436+ 34487 34487 -618 7 4171 104430374 104434436 5767 5767;7541;18142;33869;59911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:104430374-104434436&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.48 0.0 1.913984 0.9979 -1.281892 3.195876 0.190424449257 0.632593951576 9209 Best 9209 9209;10532;13016;14084;50022 -3.709684 0.7102 -5.376716 1.667032 0.0163604675131 0.484167517045 28260 9820 9820;22956;28260;33042;50064 0.0 0.0 ENST00000429464.1 NC not annotated potentially spurious 33901 475831 chr1:214010044-214010097- NoOverlap chr1 214010044 214010097 - 4.35537768404 18 0.92601578461 1.26379990578 3.09157777826 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;214010043;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214010044-214010097-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A214010044-214010097&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.126373199357 0.051741220935 0.618730711424 214183387 214183440 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214183386;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214010044-214010097-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214183387-214183440&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PIQELYFHSVCLLCLYSASRGTRLKRQLKDPHYLIFWLPISIELKPITIC Same 477721 chr1:214010044-214010097- 34255 34255 -354 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.642857142857 -1.91816666667 0.9997 -2.82878888889 0.910622222222 -0.0382790093439 0.36952990081 65575 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -6.99821111111 0.8073 -7.59355 0.595338888889 -0.0382519423461 0.389661806768 63933 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000261454.8 AntiCDSintron not annotated potentially spurious 33906 546247 chr21:8214073-8214147+ NoOverlap chr21 8214073 8214147 + 3.23201997995 25 0.533806363012 -0.247200009823 3.47921998978 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8214072;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8214073-8214147%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8214073-8214147&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0177667840685 0.0517147021024 0.736977822233 113533 113607 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;113532;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8214073-8214147%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A113533-113607&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPAPLVGGPSPSDRGPARGRCEAGSGPRRAGPGSSR Same 547661 chr21:8214073-8214147+ 34918 34918 -1012 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.76 0.744416873449 -0.676888 0.2618 -2.757608 2.08072 0.000916874744596 0.519133755661 41047 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -6.684272 0.3782 -8.484656 1.800384 -0.0317490826394 0.479500484262 58703 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 33934 503473 chr14:23352900-23352971- NoOverlap chr14 23352900 23352971 - 2.50503337135 24 0.673725235879 -2.10271253188 4.60774590323 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23352899;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352900-23352971-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23352900-23352971&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0670083440348 0.0515708194018 0.859057975533 23822109 23822180 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23822108;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352900-23352971-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23822109-23822180&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRVWTEGSADVGRGGESRGRGGESSAEIAETK Same 505312 chr14:23352900-23352971- 37280 37280 -3346 0 605 23352215 23352971 930 930;2839;33934;60530;60698;63662 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23352215-23352971&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.597222222222 0.705882352941 -0.514716666667 0.9637 -4.81505416667 4.3003375 0.0793452458561 0.710015615133 18367 1342 1342;1960;18367;45222;70218;73449 -1.34891666667 0.3847 -6.10186666667 4.75295 0.064375987869 0.615590242563 16098 3678 3678;4381;6108;16098;43094;60471 0.0 0.0265957158758 chr6:3455906-3456559- ENST00000354772.7,ENST00000474057.5 UTR5,NC under investigation SLC22A17 potential non-ATG start 33955 588635 chr9:23821632-23821694+ NoOverlap chr9 23821632 23821694 + 4.11476658498 21 0.46910883679 0.482147645383 3.63261893959 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23821631;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821632-23821694%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23821632-23821694&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0284307958839 0.0514705214857 0.717570992972 23821630 23821692 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23821629;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821632-23821694%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23821630-23821692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LEAAATTARAAGRQHCRGGVARGELRGEAVAAAAAGK Same 589581 chr9:23821632-23821694+ 33872 33872 83 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.761904761905 1.21153846154 -4.41217619048 0.7104 -5.08044761905 0.668271428571 -0.0335341092651 0.360888886761 62734 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -3.82273809524 0.3367 -10.4257285714 6.60299047619 0.0351941984581 0.668605308926 22240 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.154772048599 chr17:38509944-38510972+ ENST00000544538.5,ENST00000380117.5,ENST00000462649.1 AntiUTR5,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 34026 546265 chr21:8216268-8216624+ NoOverlap chr21 8216268 8216624 + 1.89498065205 119 0.389801331382 1.52842940328 0.366551248779 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8216267;357;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8216268-8216624%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8216268-8216624&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0392842354185 0.0511319383149 0.486310202586 115739 116095 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;115738;357;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8216268-8216624%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A115739-116095&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPKWRRVPCEQQLNMGQSVLRDGRAPF*RDGRWPPLPSADRKGVGFRSPNPEWRRWAPRGVQCGNATDPGEAGGSPGESSLFFVKGRAPWNGFAPREGPVPWKASRFRRRPVSSRWPLKIR Same 547678 chr21:8216268-8216624+ 26620 26620 7406 27 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.652661064426 1.06201372998 0.118146218487 0.248 -0.00758151260504 0.125727731092 0.0160794279321 0.454561250132 34169 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -2.68351092437 0.166 -1.86311008403 -0.820400840336 -0.0221662814153 0.488840117245 49937 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0708321616277 chr3:9840184-9840335- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 34106 569626 chr5:157690412-157690597- NoOverlap chr5 157690412 157690597 - 2.39623225168 62 0.399002749085 0.95064513911 1.44558711257 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;157690411;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A157690412-157690597-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A157690412-157690597&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0415144630658 0.0506601497267 0.626103821771 157117420 157117605 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;157117419;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A157690412-157690597-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A157117420-157117605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QFRPDLRLLLPPASSEGAPCRPELHPVQPRALHVKAKK*ELGACLDASVRPRGAVETGRRASR Same 570644 chr5:157690412-157690597- 32528 32528 1578 23 835 157689958 157690896 1295 1295;1973;10238;34106 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:157689958-157690896&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.709677419355 0.725895316804 4.92083870968 0.7715 0.422185483871 4.49865322581 0.532429638878 0.890499917017 2918 938 938;1196;2643;2918 4.90866129032 0.3738 -1.23337741935 6.14203870968 0.373399579357 0.774471337411 4099 405 405;2510;4099;5825 0.952802858992 chr5:157651112-157652078- 0.85842628778 chr5:157651112-157652078- pseudogene SRY-box 30 (SOX30) pseuodgene (ENSG00000253798) 34107 554445 chr3:187739883-187739924+ NoOverlap chr3 187739883 187739924 + 4.82840715136 14 0.854234923541 -0.29262149334 5.1210286447 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;187739882;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187739883-187739924%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A187739883-187739924&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0460163429848 0.0506561119879 0.815697220539 187457671 187457712 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;187457670;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A187739883-187739924%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A187457671-187457712&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLFTLMKMEGTNCPWK Same 555395 chr3:187739883-187739924+ 32787 32787 1320 0 576 187739883 187745776 875 875;1104;7504;8158;11541;34107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:187739883-187745776&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.404761904762 0.6 0.802971428571 1.0 -3.22516428571 4.02813571429 0.0440801748205 0.608701402342 24508 3665 3665;8409;10256;24508;44991;56743 -7.51243571429 0.4811 -10.5816214286 3.06918571429 -0.0327103429795 0.459276002863 59538 5778 5778;12942;12969;14939;33269;59538 0.0 0.0 ENST00000406870.6,ENST00000470319.1 AntiUTR5intron,AntiNCintron under investigation Finds a putative 38aa CDS antisense to the 5' UTR of BCL6. However, it is difficult to interpret the accuracy of the PhyloCSF signal here as the region has deep conservation over a wider region, presumptively due to being the promoter of BCL6, and the 38aa CDS has very low complexity. There is also very little transcriptional support for the locus in human or mouse. 34119 552735 chr3:71003704-71003769+ NoOverlap chr3 71003704 71003769 + 3.40890910951 22 0.933917337717 -0.0606546022675 3.46956371177 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;71003703;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71003704-71003769%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A71003704-71003769&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.064724657523 0.0506111656697 0.710650454301 71052855 71052920 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;71052854;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71003704-71003769%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A71052855-71052920&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YDWRIFISLCMNYCLKMLMQEHFINHLIIILAGCLN Same 553676 chr3:71003704-71003769+ 35397 35397 -1278 0 1139 71003497 71007603 1733 1733;12046;22344;31751;34119;35077;44486;44775 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:71003497-71007603&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.378787878788 0.0 -0.365968181818 0.9999 -1.31166363636 0.945695454545 0.0080932810996 0.400471489747 37626 3178 3178;6887;32675;36085;37626;45905;46741;64024 -7.88189545455 0.9988 -4.11695 -3.76494545455 -0.0418685448362 0.245712566481 66587 10807 10807;16615;30087;31390;48859;55997;64759;66587 0.0 0.0 ENST00000318789.8,ENST00000327590.8 AntiCDSintron,AntiNCintron not annotated putative regulatory region 34189 472692 chr1:63000261-63000329- NoOverlap chr1 63000261 63000329 - 2.7560479019 23 0.891996643015 -1.73039565916 4.48644356106 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;63000260;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A63000261-63000329-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A63000261-63000329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0473420660836 0.0502551000919 0.838688333342 63465932 63466000 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;63465931;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A63000261-63000329-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A63465932-63466000&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNHDFHKDNEALKDGENVAINLPFCYLVIR Same 474571 chr1:63000261-63000329- 34536 34536 -347 0 668 62997933 63000329 1026 1026;13743;18049;27623;33268;34189;37177;59194;68808 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:62997933-63000329&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.478260869565 0.766666666667 0.603491304348 1.0 -2.03737391304 2.64086521739 0.09069578037 0.562673581374 16945 6220 6220;8200;13946;16945;28973;32781;63612;68420;69109 -3.30272173913 0.934 -6.51483913043 3.2121173913 0.0330725246355 0.539553319913 22844 6223 6223;11538;12991;22844;28460;29330;40736;45828;71146 0.0 0.0 not annotated putative regulatory region 34266 527288 chr19:12786693-12786737+ NoOverlap chr19 12786693 12786737 + 4.5716199557 15 0.655871417309 -0.959026714166 5.53064666986 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12786692;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12786693-12786737%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12786693-12786737&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0106270292034 0.0499635159873 0.868097902348 12897507 12897551 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12897506;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12786693-12786737%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12897507-12897551&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTLAEAWNRLYQLGWAPALPVWPNLHPVLK Same 528734 chr19:12786693-12786737+ 36026 36026 -1760 0 96 12775496 12806530 113 113;1182;3126;12882;12916;19147;21814;28171;30495;34266;70783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12775496-12806530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.333333333333 -3.7096 0.9238 -4.47618 0.76658 -0.0418438461784 0.342655437583 67609 845 845;1545;3224;5434;8474;11177;11868;16562;28502;47510;67609 -8.00738666667 0.3534 -6.25092 -1.75646666667 -0.0277243982183 0.280427886706 55016 40 40;3058;6466;7449;7608;8225;15095;31105;55016;67420;71961 0.0 0.0537410122749 chr19:15160662-15161714- ENST00000589765.1 AntiNCintron not annotated putative regulatory region 34300 586886 chr8:64379162-64379194- NoOverlap chr8 64379162 64379194 - 6.4385453571 11 0.932087642273 1.52351822094 4.91502713615 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;64379161;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64379162-64379194-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A64379162-64379194&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0890569739287 0.0498113959665 0.740812412221 65291719 65291751 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;65291718;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64379162-64379194-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A65291719-65291751&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IKVRCEHGEQSL Same 587827 chr8:64379162-64379194- 33757 33757 543 0 5341 64368369 64380096 7413 7413;23157;28942;34300;70170;70979;72036 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:64368369-64380096&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.575757575758 0.75 1.04142727273 0.9872 -0.00426363636364 1.04569090909 -0.0204169065039 0.325806932832 54451 9455 9455;23665;25300;33558;51744;54451;62241 -1.99417272727 0.9165 -4.17774545455 2.18357272727 -0.0190609826736 0.414257047697 47356 29002 29002;44391;44674;45945;47356;48925;63213 0.0 0.0610679114367 chr7:92447730-92447978+ ENST00000385081.1,ENST00000519741.1 AntiNC,AntiNCintron not annotated potentially spurious 34338 518052 chr17:48590312-48590386+ NoOverlap chr17 48590312 48590386 + 3.53525985925 25 0.908784618906 2.08770396471 1.44755589454 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48590311;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48590312-48590386%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48590312-48590386&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.186274251684 0.0496659725482 0.468242132946 46667674 46667748 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46667673;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48590312-48590386%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46667674-46667748&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTLWTSRDFLEPVRGICLTSRRFLRSNFEIKPLSI Same 519453 chr17:48590312-48590386+ 33737 33737 601 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.493333333333 1.09649122807 -1.129948 0.9909 -2.230304 1.100356 -0.00808983180202 0.428612425176 45941 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -10.413732 0.9148 -12.69544 2.281708 -0.0371930994122 0.478722707392 63115 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000465846.6,ENST00000552000.2 NCintron,AntiNCintron not annotated putative regulatory region 34396 539483 chr2:88811636-88811692- NoOverlap chr2 88811636 88811692 - 4.5605000383 19 0.226504921035 -1.68826316846 6.24876320676 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;88811635;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88811636-88811692-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A88811636-88811692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00562327084565 0.0494448986907 0.958644667732 89111150 89111206 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;89111149;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A88811636-88811692-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A89111150-89111206&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FFAFVTMLLYILHAFSIYYH Same 540861 chr2:88811636-88811692- 33790 33790 606 0 13661 88811636 88818414 22295 22295;30258;34396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:88811636-88818414&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.491228070175 0.863636363636 6.812 0.2624 -1.82830526316 8.64030526316 0.10140110268 0.97174870825 15690 9685 9685;15690;17244 18.6917315789 0.3132 -1.02232631579 19.7140578947 0.633714644812 1.01167372715 3050 677 677;2655;3050 0.96299356666 chr2:110085695-110085757- 0.979924942284 chr2:110085695-110085757- ENST00000624935.3 NC pseudogene mal, T-cell differentiation protein-like (MALL) unprocessed pseudogene (ENSG00000283270) 34439 588648 chr9:23825871-23825930+ NoOverlap chr9 23825871 23825930 + 4.0468300283 20 0.947510490578 1.38341501951 2.66341500878 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23825870;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23825871-23825930%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23825871-23825930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.131241778503 0.0491975314303 0.584524743285 23825869 23825928 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23825868;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23825871-23825930%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23825869-23825928&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MSKKLLDSSLKTARNLNCAR Same 589594 chr9:23825871-23825930+ 35674 35674 -1235 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.615384615385 0.71575 0.9998 -0.06526 0.78101 0.0313323109567 0.374897826727 28187 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -4.452365 0.5952 -6.303535 1.85117 -0.00721811347136 0.460881701579 39281 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000380117.5,ENST00000462649.1 AntiUTR5,AntiNC not annotated putative regulatory region 34457 500795 chr14:22929716-22929775+ NoOverlap chr14 22929716 22929775 + 3.77533497214 20 0.889997711147 0.476504953206 3.29883001894 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22929715;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22929716-22929775%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22929716-22929775&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0944994347075 0.0490861816404 0.669208070137 23398925 23398984 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23398924;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22929716-22929775%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23398925-23398984&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSAISGPVAQWITRLTTDQKIPGSTPGWLGGVPR Same 502687 chr14:22929716-22929775+ 33965 33965 492 0 1511 22928522 22929775 2247 2247;5015;34457 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22928522-22929775&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.55 1.11111111111 -0.139735 0.9917 -4.02913 3.889395 0.0655579347725 0.647258029156 20365 4477 4477;20365;26902 -0.791285 0.4485 -4.88346 4.092175 0.0547572990867 0.562542754054 17788 4571 4571;17788;54896 0.0 0.0 ENST00000548322.1 NC not annotated potentially spurious 34516 547231 chr21:8434648-8434698- NoOverlap chr21 8434648 8434698 - 5.08825290028 17 0.204358694725 -1.26308819652 6.35134109679 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8434647;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8434648-8434698-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8434648-8434698&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00272063662147 0.0488005408433 0.949577202518 150822 150872 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;150821;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8434648-8434698-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A150822-150872&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QRRRPGGSGTPKARLSDR Same 548634 chr21:8434648-8434698- 35287 35287 -771 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.745098039216 0.85 -1.80801176471 0.2733 -6.66200588235 4.85399411765 0.0039049090718 0.696691410753 39549 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -3.70815882353 0.2821 -9.28042352941 5.57226470588 -4.16761543222e-05 0.597977765065 35374 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0972550771728 chr19:19245313-19245457+ not annotated SSU-rRNA_Hsa 34535 522926 chr17:67995759-67995818- NoOverlap chr17 67995759 67995818 - 5.1199700621 20 0.478481727321 3.14335505068 1.97661501141 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;67995758;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A67995759-67995818-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A67995759-67995818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.069965508389 0.0487128490087 0.484209512201 65991875 65991934 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;65991874;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A67995759-67995818-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A65991875-65991934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRGAPFGSRARAGLAGRRGVRPPR Same 524361 chr17:67995759-67995818- 34966 34966 -431 0 538 67993147 67996207 816 816;971;14397;15782;34535 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:67993147-67996207&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.816666666667 1.12244897959 1.443585 0.6427 -0.032635 1.47622 -0.0122135636398 0.43670543587 48625 535 535;740;4772;6794;48625 -5.55202 0.3421 -5.21471 -0.33731 -0.0376069231921 0.369221861771 63387 946 946;1766;4259;11308;63387 0.0 0.0 ENST00000580729.1 NCintron coding exon(s) C17orf58 alternative 5' extension 34542 518093 chr17:48614468-48614626+ NoOverlap chr17 48614468 48614626 + 2.52924901359 53 0.420628182262 0.834056616392 1.6951923972 ENST00000239144.4,ENST00000576562.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48614467;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48614468-48614626%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48614468-48614626&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0308453693218 0.0486546697404 0.646063170021 46691830 46691988 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46691829;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48614468-48614626%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46691830-46691988&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVAVEIAGVPVARHGARVLLVGSRGQRRRPVVELLDLRRVLEAAAAAGTVHHGGSAAQVLGEAAVIIIGAQGLPGFVFGEQ Same 519494 chr17:48614468-48614626+ 33946 33946 596 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.704402515723 0.927113702624 -1.41883962264 0.8573 -2.92836037736 1.50952075472 0.0146456288045 0.542654775019 34807 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -21.1644301887 0.9496 -35.377190566 14.2127603774 0.0740797076181 0.876189245758 14562 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000239144.4,ENST00000567101.2 AntiCDS,AntiNCintron not annotated putative regulatory region 34549 573469 chr6:168002105-168002143+ NoOverlap chr6 168002105 168002143 + 2.38080774133 13 0.100999465934 0.49636932749 1.88443841384 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;168002104;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A168002105-168002143%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A168002105-168002143&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0449627871182 0.0486124472392 0.436949756175 168402785 168402823 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;168402784;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A168002105-168002143%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A168402785-168402823&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KTPEAWPRAGEKTPEAWPR Same 574497 chr6:168002105-168002143+ 36691 36691 -2142 0 327 167976938 168002143 446 446;1208;2908;3125;34549;35422;36527;37043;41869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:167976938-168002143&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.615384615385 0.577777777778 1.33589230769 0.0244 1.23921538462 0.0966769230769 0.0403909100432 0.265652035938 25456 1167 1167;2159;2163;3104;6372;25026;25456;26766;27130 1.64386153846 0.2932 -0.0574307692308 1.70129230769 -0.00865138773235 0.410515634488 40134 139 139;2661;3543;3691;4447;13096;13690;18631;40134 0.0 0.199259173941 chrX:108732571-108736344- ENST00000443060.6,ENST00000515361.5 UTR5intron,NCintron pseudo-exon KIF25 has 8 exons upstream that are coding as part of this locus in other mammals. At least two of these exons are clearly pseudogenic. This suggests the locus may be a pseudogene, although it has been maintained as coding due to published experimental support for its functionality. 34553 518102 chr17:48621307-48621348+ NoOverlap chr17 48621307 48621348 + 5.12970716613 14 0.900389105058 0.750314184598 4.37939298153 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48621306;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48621307-48621348%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48621307-48621348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0875746439748 0.0486002816388 0.729751956748 46698669 46698710 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46698668;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48621307-48621348%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46698669-46698710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSETITPKEITKHKHNFTTATDK Same 519503 chr17:48621307-48621348+ 33792 33792 761 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.428571428571 1.29230769231 0.0736857142857 0.9573 -3.89081428571 3.9645 0.00613476083955 0.602730865564 38508 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -2.07162857143 0.3549 -5.22929285714 3.15766428571 -0.0118734399494 0.477749295527 42081 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000311177.6,ENST00000567101.2 AntiUTR3,AntiNCintron not annotated putative regulatory region 34569 577691 chr7:27156210-27156266+ NoOverlap chr7 27156210 27156266 + 3.10996843639 19 0.867923528207 -2.22143165218 5.33140008857 ENST00000242159.4 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27156209;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27156210-27156266%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27156210-27156266&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0743502086393 0.0485151194356 0.890577369603 27195829 27195885 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27195828;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27156210-27156266%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27195829-27195885&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPHPGVDAEIGLSRAMQRALVRLVAGAFGEVTAEPGDVLVVGGAGQVAVGVGAQAVAGR Same 578730 chr7:27156210-27156266+ 34472 34472 97 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.701754385965 1.29545454545 -7.13568947368 0.9583 -8.7553 1.61961052632 -0.053329641435 0.430034713286 71736 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -13.8151315789 0.8556 -16.4202947368 2.60516315789 -0.0466266840351 0.431082209194 69740 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000242159.4 AntiCDS not annotated putative regulatory region 34578 578613 chr7:92916975-92917136+ NoOverlap chr7 92916975 92917136 + 1.56814632316 54 0.954886136613 -0.993950026869 2.56209635003 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;92916974;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A92916975-92917136%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A92916975-92917136&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0119877165291 0.0484624602488 0.755909451485 92546289 92546450 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;92546288;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A92916975-92917136%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A92546289-92546450&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLECGSR**CLLSVCLTESFLFSEQQSKAWEPGQMPATYLKLISHFEIKTPESCHTVK Same 579654 chr7:92916975-92917136+ 31612 31612 2966 9 18813 92916975 92917136 Best 34578 34578 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:92916975-92917136&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.106789716546 -1.80552037037 0.9996 -3.09288518519 1.28736481481 0.0378633806775 0.51366810037 26177 Best 26177 26177 -9.45459074074 0.6452 -10.7421037037 1.28751296296 -0.0174050364877 0.529985344515 46113 Best 46113 46113 0.0 0.0 ENST00000419668.1 NC not annotated potentially spurious 34687 487449 chr11:20274456-20274497- NoOverlap chr11 20274456 20274497 - 4.61231428385 14 0.995549815257 -1.28885034152 5.90116462537 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;20274455;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A20274456-20274497-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A20274456-20274497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.034549778754 0.0479114202855 0.892846003978 20296002 20296043 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;20296001;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A20274456-20274497-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A20296002-20296043&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QCHFFSTLLQTFIYSSPGKLGCSVHWAFSCTEVK Same 489419 chr11:20274456-20274497- 45627 45627 -10940 0 743 20274456 20277249 1144 1144;16499;34687;35486;44462 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:20274456-20277249&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.47619047619 0.4375 1.84512142857 0.9963 -3.89502142857 5.74014285714 0.114136000996 0.749858565683 14487 7832 7832;14487;49634;64437;70242 -4.77442857143 0.7289 -9.28123571429 4.50680714286 -0.0105773391579 0.527897153413 41275 8350 8350;41275;47988;61181;69341 0.0 0.0 not annotated putative regulatory region 34729 510362 chr16:1433005-1433046+ NoOverlap chr16 1433005 1433046 + 4.45687135415 14 0.577422097244 -2.47034288304 6.9272142372 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;1433004;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A1433005-1433046%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A1433005-1433046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0226033017768 0.0477219229177 0.971104522293 1483006 1483047 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;1483005;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A1433005-1433046%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A1483006-1483047&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LARGGSLEDEDTPEPR Same 512003 chr16:1433005-1433046+ 35505 35505 -776 0 250 1432591 1433358 320 320;530;5454;34729 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:1432591-1433358&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.785714285714 0.617647058824 5.89385714286 0.8491 -10.9991357143 16.8929928571 0.415121339618 1.01275331204 3844 321 321;892;1694;3844 7.09743571429 0.7323 -13.5042142857 20.60165 0.545415558894 1.04105931254 3365 417 417;1698;1787;3365 0.0 0.0831111450523 chr19:1483838-1483941- protein-coding gene protein-coding gene ENSG00000284395 34818 529200 chr19:53212144-53212191+ NoOverlap chr19 53212144 53212191 + 4.99258128417 16 0.38181029221 -0.425274968147 5.41785625232 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;53212143;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A53212144-53212191%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A53212144-53212191&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00201799102168 0.0472761426362 0.863017842763 53715397 53715444 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;53715396;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A53212144-53212191%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A53715397-53715444&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IHTREKSYRCNECGKTFNK Same 530659 chr19:53212144-53212191+ 33593 33593 1225 0 5132 53204022 53212191 7119 7119;23010;34818;59931 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:53204022-53212191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.395833333333 0.0 6.12744375 0.4903 -7.19448125 13.321925 0.211679591678 1.05507385595 8326 1567 1567;2158;4633;8326 54.04418125 0.836 -3.59394375 57.638125 0.976226001888 0.989608549929 1494 332 332;671;880;1494 0.373059806006 chr19:53164453-53166294- 0.485976856074 chr19:36747767-36750804- pseudogene zinc finger protein pseudogene (ENSG00000269001) 34837 478906 chr10:113125290-113125319+ NoOverlap chr10 113125290 113125319 + 6.95279978216 10 0.826504921035 1.60508005321 5.34771972895 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113125289;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125290-113125319%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113125290-113125319&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0804030872252 0.0471833371614 0.768568788726 114885049 114885078 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114885048;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125290-113125319%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114885049-114885078&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLDSCRKRYAVCIFF Same 480807 chr10:113125290-113125319+ 32631 32631 2206 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 1.07142857143 6.02118 0.9981 0.74553 5.27565 0.184640637369 0.658701834809 9466 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 1.53299 0.7298 -8.42421 9.9572 0.110479201652 0.721900882018 10596 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 34885 515942 chr17:2399997-2400035+ NoOverlap chr17 2399997 2400035 + 6.13864603409 13 0.878474802073 4.32560779957 1.81303823453 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2399996;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2399997-2400035%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2399997-2400035&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.175015723948 0.046990612079 0.376151661354 2303291 2303329 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2303290;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2399997-2400035%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2303291-2303329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGWPGS*DTRCHFILQRPPPPQAAR Same 517318 chr17:2399997-2400035+ 33696 33696 1189 6 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.564102564103 0.975 -1.44499230769 0.9481 -1.44286153846 -0.00213076923077 -0.0404823916929 0.266181464903 66847 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -5.75988461538 0.4772 -4.25085384615 -1.50903076923 -0.0363383968013 0.28249064438 62505 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0746329300378 chr15:60004964-60005941+ ENST00000174618.4,ENST00000574559.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 34912 573875 chr6:15244943-15244996- NoOverlap chr6 15244943 15244996 - 4.71143891414 18 0.622357857972 1.76385002004 2.9475888941 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;15244942;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15244943-15244996-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A15244943-15244996&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0854930559459 0.0468885157176 0.596713337121 15245174 15245227 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;15245173;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15244943-15244996-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A15245174-15245227&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAAPAACAVQPVSPQDSASR Same 574904 chr6:15244943-15244996- 35974 35974 -1062 0 1766 15244943 15246114 2604 2604;15135;20464;24558;26329;27078;34912;61691;69748 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:15244943-15246114&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.703703703704 0.9 5.84622222222 0.7622 1.12777777778 4.71844444444 0.182948985825 0.7023443486 9551 Best 9551 9551;16260;24695;37413;40709;45352;56150;59595;63982 -1.00366111111 0.4504 -3.42183333333 2.41817222222 0.017528392229 0.477601959125 27835 10022 10022;12289;27835;30484;54557;56016;61735;63783;63901 0.0 0.0 ENST00000607711.1 NC not annotated putative regulatory region 34925 485912 chr11:111447053-111447100+ NoOverlap chr11 111447053 111447100 + 5.33712495863 16 0.408804455634 1.07518127561 4.26194368303 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;111447052;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111447053-111447100%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A111447053-111447100&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0127080951796 0.0468262794366 0.735125440902 111317778 111317825 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;111317777;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A111447053-111447100%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A111317778-111317825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCPPTGSLCHNSPPAPCAPGTFLSGAGPYNASFCHLCPFEK Same 487870 chr11:111447053-111447100+ 35109 35109 -184 0 298 111447053 111473375 394 394;430;459;466;487;540;586;632;757;948;972;1068;1094;1309;1341;1348;1487;1972;1981;1991;1993;2114;2318;2404;2469;2711;2936;3030;3043;5110;5591;8119;12393;13950;16967;29276;34925 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:111447053-111473375&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.625 0.22966507177 5.3938125 0.8825 4.3104125 1.0834 0.0963317627065 0.361123760661 16266 169 169;225;390;598;679;707;863;1020;1052;1069;1190;1297;1311;1350;1501;1514;1521;1565;1683;1773;1921;1968;2042;2146;2227;2277;2361;2456;2661;2761;2813;3345;3545;3947;4906;11325;16266 5.3854625 0.3155 4.6034125 0.78205 0.0317260011235 0.392561656303 23236 143 143;181;396;409;526;618;619;698;781;837;847;867;910;1100;1265;1384;1659;1674;1775;2054;2128;2165;2417;2877;3082;3097;3343;3493;3648;3682;3933;4414;4888;7044;7536;13173;23236 0.0 0.0 ENST00000531398.1,ENST00000525890.1 AntiUTR5intron,AntiNCintron pseudogene unitary pseudogene ENSG00000255093 34981 475825 chr1:213997166-213997207- NoOverlap chr1 213997166 213997207 - 4.76534262353 14 0.980193789578 -0.755007100957 5.52034972448 ENST00000261454.8,ENST00000366958.8,ENST00000435016.2,ENST00000471129.1,ENST00000498508.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;213997165;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213997166-213997207-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A213997166-213997207&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000968299807576 0.046577076968 0.856505470243 214170509 214170550 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214170508;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213997166-213997207-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214170509-214170550&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NQLLETLLLLLGKLLLAFVFSVTFSGTHR Same 477715 chr1:213997166-213997207- 42211 42211 -7230 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.547619047619 0.0 5.20930714286 1.0 -5.25375 10.4630571429 0.401151175056 1.01047826682 3996 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 2.04033571429 0.9908 -17.3704428571 19.4107785714 0.272113128744 1.0336841103 4922 Best 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.103726943056 chr17:64129976-64130029- ENST00000261454.8 AntiCDS not annotated potentially spurious 35007 570022 chr5:176156913-176156969- NoOverlap chr5 176156913 176156969 - 4.06343681248 19 0.326172033425 -1.86222623524 5.92566304772 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;176156912;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176156913-176156969-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A176156913-176156969&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000171564973252 0.0464302835601 0.936843870857 175583916 175583972 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;175583915;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176156913-176156969-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A175583916-175583972&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MSYHFSCYMCQWIVLEFCFLEMNLTQNVVYGNEEGRGVMDLACHTSFTSK Same 571040 chr5:176156913-176156969- 32181 32181 2826 0 6143 176146963 176156969 8635 8635;13435;25692;32992;35007;45549;51680 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:176146963-176156969&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.526315789474 0.0 12.6048894737 0.7051 4.29111578947 8.31377368421 0.502452276301 0.930192705875 3127 17 17;170;306;1893;3127;16509;16641 19.0198421053 0.4208 6.81394736842 12.2058947368 0.637084416249 0.826117919895 3031 11 11;134;388;800;3031;3612;16194 0.980764856992 chr18:13030465-13030608+ 0.805696228679 chr18:13030465-13030608+ ENST00000515403.5 NC pseudogene centrosomal protein 192kDa (CEP192) pseudogene (ENSG00000283559) 35037 590944 chr9:134025449-134025478+ NoOverlap chr9 134025449 134025478 + 7.79917994738 10 0.465276569772 2.58248995841 5.21668998897 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;134025448;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A134025449-134025478%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A134025449-134025478&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0208731074033 0.0462637928109 0.738896620728 136890571 136890600 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;136890570;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A134025449-134025478%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A136890571-136890600&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LARPAALPWRHGPAAAGPALGAPQCVAPLPASPRPATSGDWGGR Same 591897 chr9:134025449-134025478+ 36901 36901 -1864 0 420 134025449 134027002 592 592;35037 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:134025449-134027002&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.866666666667 0.9375 6.8644 0.4956 -6.91785 13.78225 0.10981953885 1.03763359224 14886 746 746;14886 8.59683 0.2199 -6.04907 14.6459 0.0987757732785 0.871700156563 11626 191 191;11626 0.0 0.0 ENST00000430633.5 NC protein-coding gene protein-coding gene ENSG00000235106 35077 552736 chr3:71004743-71004808+ NoOverlap chr3 71004743 71004808 + 3.71130453287 22 0.981855635781 0.99784543433 2.71345909854 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;71004742;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71004743-71004808%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A71004743-71004808&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.106853981726 0.0460841697946 0.611789400847 71053894 71053959 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;71053893;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71004743-71004808%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A71053894-71053959&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FKMNAMDFKLEMLSRSYVTSFGIFSFGHTA Same 553677 chr3:71004743-71004808+ 39232 39232 -4155 0 1139 71003497 71007603 1733 1733;12046;22344;31751;34119;35077;44486;44775 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:71003497-71007603&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.363636363636 1.03125 -0.228409090909 1.0 0.168595454545 -0.397004545455 -0.00940030321119 0.287429963419 46741 3178 3178;6887;32675;36085;37626;45905;46741;64024 -8.36087272727 0.8556 -9.09335909091 0.732486363636 -0.0393747935002 0.412437313919 64759 10807 10807;16615;30087;31390;48859;55997;64759;66587 0.0 0.0 ENST00000318789.8,ENST00000327590.8 AntiCDSintron,AntiNCintron not annotated putative regulatory region 35112 479917 chr10:8037423-8037467- NoOverlap chr10 8037423 8037467 - 6.24085998436 15 0.562112865899 4.57392655214 1.66693343222 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8037422;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8037423-8037467-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8037423-8037467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.107123914505 0.045925542415 0.379708545371 8079386 8079430 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8079385;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8037423-8037467-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8079386-8079430&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTFNVYTRTGGALALRGPGAGLK Same 481825 chr10:8037423-8037467- 35536 35536 -424 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.8 1.0 5.26479333333 0.9593 3.05354 2.21125333333 0.152755719017 0.45111521396 11381 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 1.60989333333 0.7878 -2.85543333333 4.46532666667 0.0820604380223 0.541777984376 13529 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 not annotated putative regulatory region 35128 554884 chr3:13043070-13043105- NoOverlap chr3 13043070 13043105 - 5.7562083602 12 0.729648279545 0.118674953779 5.63753340642 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;13043069;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A13043070-13043105-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A13043070-13043105&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0422918117607 0.0458230415517 0.838580228515 13084570 13084605 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;13084569;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A13043070-13043105-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A13084570-13084605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RFHFRFYQCVPVAQATAGAGRPCQSSFACLSEPSCPHPK Same 555836 chr3:13043070-13043105- 35502 35502 -374 0 650 13042289 13047521 998 998;13400;35128 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:13042289-13047521&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 1.33333333333 1.90885833333 0.9352 -1.40833333333 3.31719166667 0.00892177465702 0.526683869036 37259 1537 1537;3707;37259 0.800591666667 0.6215 -2.02181666667 2.82240833333 0.0181935539417 0.448674236476 27615 381 381;3871;27615 0.0 0.0 ENST00000613206.1 CDSintron coding exon(s) IQSEC1 alternative first exon 35146 462829 chr1:924860-924913+ NoOverlap chr1 924860 924913 + 4.77693328593 18 0.589593347066 1.81646113926 2.96047214667 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;924859;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A924860-924913%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A924860-924913&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.075546436638 0.0457032763456 0.59781176432 860240 860293 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;860239;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A924860-924913%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A860240-860293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQTLPGQQGPVHPPPRRVAHAQRVPVRQRPRDGQGLEAQHPPQR Same 464693 chr1:924860-924913+ 36114 36114 -968 0 169 923849 924956 201 201;31639;35146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:923849-924956&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 1.35 -5.98126666667 0.8689 -9.03400555556 3.05273888889 -0.0364697338553 0.53806271843 64576 322 322;37252;64576 -33.0431 0.9174 -31.4453611111 -1.59773888889 0.0317246950069 0.113506488434 23237 775 775;23237;23360 0.0 0.0536192835017 chr7:149792066-149792206+ ENST00000420190.5 UTR5 coding exon(s) SAMD11 5' extension 35188 522544 chr17:58328869-58328919- NoOverlap chr17 58328869 58328919 - 4.90948241774 17 0.785000381476 3.25304714371 1.65643527403 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;58328868;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A58328869-58328919-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A58328869-58328919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.17065237632 0.0455267335977 0.413397192052 56406230 56406280 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;56406229;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A58328869-58328919-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A56406230-56406280&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETCSSFCPRPCQPVQPTSPAPSPWKPAADFLLVGGR Same 523972 chr17:58328869-58328919- 34748 34748 440 0 927 58324435 58331258 1430 1430;23079;35188;45808;68388 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:58324435-58331258&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.607843137255 0.485714285714 1.38529411765 1.0 1.62264705882 -0.237352941176 0.0182323467294 0.268906444699 33297 3022 3022;4098;31103;33297;53580 -3.95444705882 0.4426 -1.80570588235 -2.14874117647 -0.0357944352399 0.285977315213 62080 4412 4412;7618;50126;62080;66751 0.0 0.0 ENST00000579527.5 AntiNCintron not annotated putative regulatory region 35190 479590 chr10:129841018-129841053+ NoOverlap chr10 129841018 129841053 + 6.69730819265 12 0.799493909107 5.12565829357 1.57164989909 ENST00000355311.9,ENST00000368648.7,ENST00000440978.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129841017;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129841018-129841053%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129841018-129841053&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.164253502101 0.0455190158758 0.32638970559 131639282 131639317 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131639281;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129841018-129841053%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131639282-131639317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CLYCDCSRLLKSPPRPK Same 481495 chr10:129841018-129841053+ 34014 34014 1176 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.638888888889 0.857142857143 3.85570833333 0.9672 0.8812 2.97450833333 0.0715398516754 0.491801907783 19474 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -5.60430833333 0.7895 -9.50154166667 3.89723333333 -0.0326376576655 0.484822620653 59456 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDS not annotated potentially spurious 35212 478894 chr10:113118930-113119019+ NoOverlap chr10 113118930 113119019 + 2.99839670161 30 0.924498359655 1.45202342868 1.54637327294 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113118929;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113118930-113119019%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113118930-113119019&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.16043962192 0.045454000517 0.520873032136 114878689 114878778 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114878688;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113118930-113119019%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114878689-114878778&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CNCNERIQNWRIDLPLASNSRRYQALSFVPSYFR Same 480795 chr10:113118930-113119019+ 34545 34545 667 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 1.35338345865 -0.739993333333 0.9984 -3.81803 3.07803666667 0.0818427022364 0.637883077602 18040 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -8.25851 0.9304 -10.4505233333 2.19201333333 -0.0140153046938 0.512166927367 43605 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 35213 537025 chr2:227599052-227599102+ NoOverlap chr2 227599052 227599102 + 4.61402339795 17 0.69635533774 1.19751765448 3.41650574348 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;227599051;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227599052-227599102%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A227599052-227599102&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0857360248565 0.0454517386411 0.648099921375 228463768 228463818 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;228463767;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A227599052-227599102%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A228463768-228463818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CGGCGGGCGGGCGGGCGGGCGGGCGGGCGGGCGGGCGGSCGSCTTCRCYRVGCCSSCCPCCR Same 538395 chr2:227599052-227599102+ 36101 36101 -888 0 561 227598893 227617809 853 853;1652;2344;9463;10241;31196;35213 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:227598893-227617809&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.686274509804 0.166666666667 9.76002941176 0.8097 -0.877711764706 10.6377411765 0.488640553453 1.01987238291 3216 692 692;818;1157;2569;3216;3360;61544 12.1702176471 0.5772 3.12485882353 9.04535882353 0.458514730892 0.723000794072 3692 2617 2617;3136;3286;3380;3692;5489;30629 0.0 0.186869580251 chr11:71527301-71527559+ protein-coding gene (shared cluster) protein-coding genes ENSG00000284643, ENSG00000284622, ENSG00000284704, ENSG00000284631 35216 489529 chr11:114162901-114162981- NoOverlap chr11 114162901 114162981 - 3.137848194 27 0.773033917415 1.03853703318 2.09931116082 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;114162900;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114162901-114162981-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A114162901-114162981&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.116517800527 0.0454379255019 0.573959366731 114033623 114033703 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;114033622;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114162901-114162981-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A114033623-114033703&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSGMLAEHPDLPAGQ*RHHSGKKFGKQAK Same 491514 chr11:114162901-114162981- 36505 36505 -1289 13 608 114160174 114164042 933 933;13272;22012;22975;35216;64783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:114160174-114164042&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.567901234568 0.460227272727 -1.88224814815 0.9468 -2.88121851852 0.99897037037 -0.0388411859887 0.425114225447 65893 5084 5084;14121;38000;47790;65893;71735 -7.2577 0.8813 -7.77818148148 0.520481481481 -0.0272394035056 0.434093256916 54566 4785 4785;23552;42025;54566;64496;66305 0.0 0.0 ENST00000335953.8,ENST00000539918.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 35248 531734 chr19:48498658-48498684- NoOverlap chr19 48498658 48498684 - 7.19427789582 9 0.566796368353 -2.21555548244 9.40983337826 ENST00000270238.3,ENST00000600059.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48498657;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48498658-48498684-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48498658-48498684&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0118383228445 0.0452944068934 1.0292842554 49001915 49001941 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49001914;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48498658-48498684-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49001915-49001941&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LRDRDPFFPR Same 533209 chr19:48498658-48498684- 36104 36104 -856 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.592592592593 0.981818181818 1.91277777778 0.7957 -2.82278888889 4.73556666667 -0.0229042799523 0.615507654156 56113 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -20.3035333333 0.6805 -16.8156111111 -3.48792222222 0.0438728617314 0.138888112501 20028 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.373248592477 chr17:81120201-81122823- ENST00000270238.3 CDS coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 35252 478914 chr10:113126822-113126866+ NoOverlap chr10 113126822 113126866 + 5.18951333364 15 0.773542890567 2.101526618 3.08798671563 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113126821;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113126822-113126866%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113126822-113126866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.124621862627 0.0452671125832 0.578195667786 114886581 114886625 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114886580;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113126822-113126866%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114886581-114886625&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLQGGCCPPVEPAAGAGPGQHLGAGSMPASRQREGQRR Same 480815 chr10:113126822-113126866+ 34479 34479 773 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.888157894737 -6.93975333333 0.7886 -6.49344 -0.446313333333 0.0131554896746 0.274411807232 35455 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -11.4057333333 0.6854 -13.32122 1.91548666667 -0.0436673904738 0.399646456656 67874 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 35279 526800 chr19:3324666-3324737+ NoOverlap chr19 3324666 3324737 + 1.67194582274 24 0.102098115511 1.24007084096 0.431874981771 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;3324665;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3324666-3324737%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A3324666-3324737&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0454543549408 0.0451362522816 0.343951559658 3324664 3324735 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;3324663;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3324666-3324737%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A3324664-3324735&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGSGPVPPLPTTLHGSYLPQGQSPSPPHGPHDLPHPLPALPSSLSSH Same 528246 chr19:3324666-3324737+ 35591 35591 -312 0 556 3314755 3324737 842 842;35279;50509;51050 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:3314755-3324737&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.625 0.0 -10.2588083333 0.34 -9.02210833333 -1.2367 0.0339856917805 0.266900372694 27310 493 493;18142;27310;38158 -10.2588083333 0.1063 -9.02210833333 -1.2367 -0.0206490506336 0.337345570116 48631 29 29;23039;33432;48631 0.0 0.0 coding exon(s) NFIC alternative first exon 35295 546233 chr21:8210306-8210689+ NoOverlap chr21 8210306 8210689 + 1.37403047667 128 0.548746852827 0.842213266762 0.531817209907 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8210305;384;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8210306-8210689%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8210306-8210689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.134883592492 0.0450551312834 0.527789924674 109753 110136 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;109752;384;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8210306-8210689%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A109753-110136&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARSWILGAGGRSAARRATARPRPLPLGAPSMLLAECPAGPEAFTLKKLECSKQARAAWIPQLGIME*DRGSILLVFGTEAMIKRDGRGHSYCAARGEILGPAQDGPERKHLPRMFSLIKNESRRFEDDQIPS Same 547647 chr21:8210306-8210689+ 10572 10572 24723 62 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5703125 1.19817844493 -1.39004921875 0.2404 -1.65155859375 0.261509375 -0.0130409981581 0.488691520355 49212 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -1.59378046875 0.1659 -1.72772421875 0.13394375 -0.00245702014208 0.536231766873 36596 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1,ENST00000631211.1 NCintron,AntiNC not annotated SSU-rRNA_Hsa repeat sequence 35315 564738 chr5:88943109-88943135+ NoOverlap chr5 88943109 88943135 + 8.19978880882 9 0.928123225079 4.80367769135 3.39611111747 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;88943108;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A88943109-88943135%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A88943109-88943135&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.12268556458 0.044969639768 0.491844302328 88238926 88238952 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;88238925;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A88943109-88943135%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A88238926-88238952&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELWSGCGTAPRYGWDLFLLAVVG Same 565726 chr5:88943109-88943135+ 34056 34056 1259 0 19088 88943109 88943135 Best 35315 35315 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:88943109-88943135&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.409090909091 3.18535555556 0.9994 0.849888888889 2.33546666667 0.0144070666857 0.406227645557 34924 Best 34924 34924 -3.06373333333 0.66 -0.0822444444444 -2.98148888889 -0.0434006171324 0.208095870264 67676 Best 67676 67676 0.0 0.0 ENST00000508718.5,ENST00000506665.1 NC,NCintron not annotated putative regulatory region 35373 484849 chr11:64242133-64242189+ NoOverlap chr11 64242133 64242189 + 4.98861045586 19 0.586205844205 3.23672102627 1.75188942959 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64242132;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64242133-64242189%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64242133-64242189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.1113257909 0.044733339497 0.445328970796 64009605 64009661 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64009604;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64242133-64242189%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64009605-64009661&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAGPWLLWPPLTPSPRCWGPRPSPLLTGLVSVAPEPGGEGGDPGQR Same 486796 chr11:64242133-64242189+ 35780 35780 -407 0 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.771929824561 0.248366013072 -1.78436842105 0.9625 -2.78708421053 1.00271578947 -0.0395217046295 0.383356330913 66287 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 -9.88284210526 0.4674 -11.6532894737 1.77044736842 -0.0399540587545 0.428309124339 65204 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.0754329259092 chr11:62516744-62534074- ENST00000394540.3,ENST00000309366.8,ENST00000536642.5 UTR5,UTR5intron,NCintron under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 35376 584689 chr8:78646129-78646191+ NoOverlap chr8 78646129 78646191 + 3.23455713849 21 0.274954495417 -4.18826669455 7.42282383304 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78646128;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78646129-78646191%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78646129-78646191&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0063299852956 0.044717176769 1.03459805732 79558364 79558426 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79558363;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78646129-78646191%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79558364-79558426&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ECQ*CGKCKHWANKSKFDKEGNSLSGNGK Same 585620 chr8:78646129-78646191+ 30540 30540 4836 3 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.380952380952 0.466666666667 -1.13074285714 0.0513 -1.9425047619 0.811761904762 0.0280925503013 0.380555643779 29441 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 5.46855238095 0.1473 -13.5522095238 19.0207619048 0.325002893675 1.05277263336 4402 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 35388 546367 chr21:8397526-8397690+ NoOverlap chr21 8397526 8397690 + 3.85298547176 55 0.180608002663 4.13852968315 -0.285544211395 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397525;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397526-8397690%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397526-8397690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0817554445845 0.0446830108353 0.384876681419 157920 158085 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157919;166;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397526-8397690%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157920-158085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APAGAGVGGRGRGWGRRGTVPRPATGRRRAHFHRGGAPRPAPGRLGRPAGKVARGAPSVRPSVLLLPVSAPAPRPPSGGR Same 547780 chr21:8397526-8397690+ 36975 36975 -1587 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.854545454545 1.01851851852 -3.50692 0.2406 -2.87392727273 -0.632992727273 -0.0355350561267 0.302000218593 64029 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -8.73675636364 0.3412 -6.83007090909 -1.90668545455 -0.0380739556701 0.400518624227 63797 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.355853182997 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 35399 534337 chr2:89662603-89662632+ NoOverlap chr2 89662603 89662632 + 8.54970989227 10 0.366796368353 5.66644448704 2.88326540523 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89662602;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89662603-89662632%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89662603-89662632&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0107189539205 0.0446259959882 0.435440132599 91924752 91924781 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91924751;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89662603-89662632%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91924752-91924781&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFLSLVGVVSAQRQVTVK Different 535714 chr2:89662603-89662983+ 950 950 34449 0 587 89662603 89662983 897 897;35399 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89662603-89662983&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.681818181818 6.8421 0.1461 3.07263 3.76947 0.041341319596 0.525097707361 25193 9056 9056;25193 41.67816 0.6644 6.59978 35.07838 0.973636015129 1.01291169254 1528 845 845;1528 0.99188274276 chr1:116616080-116616457- 0.923348621572 chr1:116616080-116616457- pseudogene immunoglobulin superfamily member 3 (IGSF3) pseudogene (ENSG00000283214) 35414 505804 chr14:105635807-105635878- NoOverlap chr14 105635807 105635878 - 1.35604161893 24 0.119356069276 0.920112481341 0.435929137593 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105635806;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105635807-105635878-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105635807-105635878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0470996406759 0.0445833468747 0.347896547366 106102144 106102215 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106102143;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105635807-105635878-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106102144-106102215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHMPATNGGHATMPATHGGHATMPATHGGHATMPATHGGHATMPATHGGHVTHTYTHGPHR Same 507630 chr14:105635807-105635878- 35388 35388 26 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.694444444444 0.811594202899 -0.0802125 0.022 0.452725 -0.5329375 0.0334507593955 0.287480583967 27477 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 -0.867333333333 0.1068 0.139954166667 -1.0072875 -0.0383002466915 0.372825550574 63975 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.0 immunoglobulin segment overlaps an immunoglobulin region 35422 573466 chr6:168001760-168001840+ NoOverlap chr6 168001760 168001840 + 1.32952597737 27 0.100980816019 0.311781569763 1.01774440761 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;168001759;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A168001760-168001840%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A168001760-168001840&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0494340136931 0.0445515421317 0.440422123053 168402440 168402520 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;168402439;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A168001760-168001840%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A168402440-168402520&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLGQVRKTPEAWPWAGEKTPEAWPRAGEKTPSGVASGR Same 574494 chr6:168001760-168001840+ 35431 35431 -9 0 327 167976938 168002143 446 446;1208;2908;3125;34549;35422;36527;37043;41869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:167976938-168002143&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.604938271605 0.297794117647 0.686581481481 0.0198 0.111322222222 0.575259259259 0.035751715045 0.401982407881 26766 1167 1167;2159;2163;3104;6372;25026;25456;26766;27130 0.669766666667 0.348 -3.36027407407 4.03004074074 0.0853856113814 0.604114868739 13096 139 139;2661;3543;3691;4447;13096;13690;18631;40134 0.0 0.0 ENST00000443060.6,ENST00000515361.5 UTR5intron,NCintron pseudo-exon KIF25 has 8 exons upstream that are coding as part of this locus in other mammals. At least two of these exons are clearly pseudogenic. This suggests the locus may be a pseudogene, although it has been maintained as coding due to published experimental support for its functionality. 35486 487452 chr11:20276489-20276515- NoOverlap chr11 20276489 20276515 - 8.15766660372 9 0.942905826403 4.53901135259 3.61865525113 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;20276488;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A20276489-20276515-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A20276489-20276515&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.117689528578 0.0442296752249 0.521262272931 20298035 20298061 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;20298034;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A20276489-20276515-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A20298035-20298061&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QNLISHGGHWVMSR Same 489422 chr11:20276489-20276515- 34607 34607 879 0 743 20274456 20277249 1144 1144;16499;34687;35486;44462 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:20274456-20277249&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.675 0.609522222222 1.0 1.006 -0.396477777778 -0.0362422248605 0.202080062962 64437 7832 7832;14487;49634;64437;70242 -3.20962222222 0.9228 -6.35168888889 3.14206666667 -0.0346441153253 0.435124416225 61181 8350 8350;41275;47988;61181;69341 0.0 0.0 not annotated putative regulatory region 35515 582272 chr7:114630748-114630840- NoOverlap chr7 114630748 114630840 - 2.69121294829 31 0.8837922115 0.527867776732 2.16334517156 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;114630747;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114630748-114630840-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A114630748-114630840&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.103212249035 0.0440626268539 0.612323440617 114270803 114270895 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;114270802;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114630748-114630840-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A114270803-114270895&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FGEKRNF*CAHWKTDCIMEQVMWIAQSLGRNKGAISIL Same 583233 chr7:114630748-114630840- 34790 34790 725 6 321 114629847 114631629 437 437;4220;35515;64095;71246 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:114629847-114631629&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.462365591398 0.420814479638 -2.21447741935 0.9964 -1.9927516129 -0.221725806452 -0.0549402850454 0.332244310347 71967 434 434;2787;4466;37278;71967 -10.3163774194 0.9229 -12.8582709677 2.54189354839 -0.0272798556712 0.51839242002 54610 378 378;3418;5157;5827;54610 0.0 0.0 ENST00000350908.8,ENST00000412402.5 AntiCDSintron,AntiNCintron not annotated low complexity region 35519 526072 chr18:56873785-56873823- NoOverlap chr18 56873785 56873823 - 4.34069234591 13 0.875813863408 -2.30764620121 6.64833854712 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;56873784;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A56873785-56873823-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A56873785-56873823&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0804311255592 0.04403404552 0.945979999786 54541016 54541054 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;54541015;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A56873785-56873823-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A54541016-54541054&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IKMNWHKLLIQDCFIPFNLVSSPAWMSTALVMDFYSNVLK Same 527516 chr18:56873785-56873823- 34707 34707 812 0 17506 56873607 56873950 31192 31192;32944;35519;70244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:56873607-56873950&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.358974358974 0.0 -0.626592307692 0.9987 -2.93181538462 2.30522307692 -0.021894930741 0.451593693889 55401 15694 15694;38183;55401;69108 -5.27783846154 0.7526 -12.6053153846 7.32747692308 0.00200124058393 0.633241753924 34366 22856 22856;27950;34366;55463 0.0 0.0 ENST00000586391.1,ENST00000254442.7,ENST00000589935.1 NC,AntiCDSintron,AntiUTR5intron not annotated potentially spurious 35559 548044 chr22:20703816-20703872+ NoOverlap chr22 20703816 20703872 + 5.43861057256 19 0.459098191806 3.73427895459 1.70433161797 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;20703815;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20703816-20703872%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A20703816-20703872&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0641539203506 0.0438679756744 0.435341186457 21058104 21058160 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21058103;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20703816-20703872%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21058104-21058160&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLSPHSHPLQEVQVKVMEAAEELDAWQSGR Same 549464 chr22:20703816-20703872+ 36403 36403 -844 0 1508 20702136 20704490 2244 2244;3957;4169;8406;12453;12907;29209;29720;35559;56010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:20702136-20704490&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.649122807018 0.452380952381 8.38299473684 0.7913 -0.227147368421 8.61014210526 0.436834957031 0.964929907982 3637 130 130;847;1263;1735;2520;3116;3637;4021;20091;38948 2.26562631579 0.5236 -5.87693157895 8.14255789474 0.20303902534 0.725781299134 6158 1022 1022;2706;2800;2896;3161;3297;5293;6158;8692;8932 0.523888725977 chr22:18529792-18529856+ 0.648276143503 chr22:18529792-18529856+ ENST00000428752.1,ENST00000414022.5 NC,NCintron pseudogene transmembrane protein 191A pseudogene (ENSG00000226287) 35570 518110 chr17:48626063-48626104+ NoOverlap chr17 48626063 48626104 + 5.37701434749 14 0.71810482948 1.29672857693 4.08028577055 ENST00000311177.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48626062;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626063-48626104%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48626063-48626104&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0821394487482 0.0438263681126 0.69101590849 46703425 46703466 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46703424;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626063-48626104%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46703425-46703466&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VRAQRRPGGAEHRR Same 519511 chr17:48626063-48626104+ 35840 35840 -270 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.809523809524 1.02083333333 -4.92897142857 0.9413 -7.66002857143 2.73105714286 -0.0406482035007 0.495377692573 66928 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -25.3308785714 0.9751 -39.2545857143 13.9237071429 -0.0176183662432 0.560186573477 46267 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000311177.6,ENST00000567101.2 AntiCDS,AntiNCintron not annotated putative regulatory region 35589 491706 chr12:53677284-53677511+ NoOverlap chr12 53677284 53677511 + 2.29696572611 76 0.785900663767 1.8155368618 0.481428864314 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;53677283;228;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53677284-53677511%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A53677284-53677511&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.27757809247 0.0437157342394 0.495075148264 54071068 54071295 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;54071067;228;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A53677284-53677511%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A54071068-54071295&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ITAAALRSRRRGEPQTGTPRPAIKTAAESPRSNFPGPRATPLQECNFARMRPRV*LSSRRNFNAANPSCRRAAEGFIWARYFTPILHLHFYGPELLK Same 493684 chr12:53677284-53677511+ 31037 31037 4552 27 511 53675817 53677539 760 760;1200;7057;16551;24062;35589 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:53675817-53677539&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592105263158 1.10144927536 -1.07610657895 0.9655 -1.00663026316 -0.0694763157895 0.0763682812699 0.382646146472 18771 2429 2429;5561;6811;18771;39125;47754 -3.00771578947 0.4573 -3.61469736842 0.606981578947 0.0783992120282 0.529226818404 14008 4274 4274;6621;14008;15709;25359;38314 0.0 0.0 ENST00000552242.5 AntiUTR5 not annotated putative regulatory region 35606 501054 chr14:29390181-29390243+ NoOverlap chr14 29390181 29390243 + 3.62156673272 21 0.86347462461 0.632042901857 2.98952383087 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;29390180;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A29390181-29390243%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A29390181-29390243&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0974770375437 0.0436500951757 0.639669318672 29859387 29859449 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29859386;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A29390181-29390243%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29859387-29859449&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSPCKPVPDSLVLCVLPALHVSGLPWPVR Same 502946 chr14:29390181-29390243+ 34800 34800 806 0 14267 29380951 29390501 23607 23607;27512;35606;68965;71384 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:29380951-29390501&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.634920634921 0.322250639386 1.27454761905 0.9977 -1.12906666667 2.40361428571 0.0961873635873 0.527818160478 16283 Best 16283 16283;37208;54952;57031;73776 -5.53375714286 0.7785 -7.64123809524 2.10748095238 -0.0117039354885 0.474265724991 41979 24002 24002;41979;56295;66595;73483 0.0 0.0 not annotated potentially spurious 35637 518095 chr17:48614941-48614991+ NoOverlap chr17 48614941 48614991 + 4.57463524973 17 0.605098308493 0.563552947605 4.01108230212 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48614940;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48614941-48614991%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48614941-48614991&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0450031771516 0.043494241067 0.722344233156 46692303 46692353 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46692302;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48614941-48614991%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46692303-46692353&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQRSLQKSKLAWQPRLARPPPTPHPPNK Same 519496 chr17:48614941-48614991+ 37159 37159 -1522 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.607843137255 0.857142857143 -2.02954705882 0.7635 -5.62084705882 3.5913 -0.0178177658543 0.590889079106 52631 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -7.60908823529 0.4809 -9.6795 2.07041176471 -0.0337851076749 0.439464360075 60463 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000567101.2 AntiNCintron not annotated putative regulatory region 35640 493930 chr12:132121440-132121526+ NoOverlap chr12 132121440 132121526 + 2.38557580833 29 0.305313559746 -2.74187934444 5.12745515276 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132121439;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132121440-132121526%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132121440-132121526&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00887146919794 0.0434742435996 0.938072785665 132605985 132606071 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132605984;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132121440-132121526%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132605985-132606071&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QCGDCLQMVRAVARQLQDRTRREAGARREEPSRLRQTSPVLPEK Same 495921 chr12:132121440-132121526+ 31192 31192 4448 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.724137931034 0.493197278912 17.0007137931 0.4861 6.02396896552 10.9767448276 0.663727929175 1.04714707275 2230 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 39.1314793103 0.6392 15.9189827586 23.2124965517 1.01221591008 1.03650704676 905 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.902212101433 chr12:131989964-131990104+ 0.715374434345 chr12:131989964-131990104+ ENST00000332441.7 NC redundant PhyloCSF signals are accounted for elsewhere on the list 35755 534722 chr2:110330068-110330139+ NoOverlap chr2 110330068 110330139 + 3.65167923644 24 0.506146206861 0.70820008715 2.94347914929 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110330067;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110330068-110330139%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110330068-110330139&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0333984504232 0.0430360918535 0.659296720851 111087645 111087716 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111087644;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110330068-110330139%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111087645-111087716&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGQDEATDCTPCPAGRACTQAGLTHPDAACSPG*VPAISQ Same 536074 chr2:110330068-110330139+ 36243 36243 -488 2 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.708333333333 0.444444444444 1.27522916667 0.6746 -4.44316666667 5.71839583333 0.0927143360152 0.833964108261 16690 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 22.3508333333 0.7644 3.7070375 18.6437958333 0.993443224038 1.00268475859 1218 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 35860 557653 chr3:181534923-181535018- NoOverlap chr3 181534923 181535018 - 2.35719062132 32 0.841226539254 -0.427974967286 2.7851655886 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;181534922;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A181534923-181535018-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A181534923-181535018&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0262385407757 0.0425712706753 0.701266216511 181252711 181252806 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;181252710;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A181534923-181535018-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A181252711-181252806&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LMNSSPVDFICNFQFTEASKPHGDKSFPYRGLSQTSR Same 558624 chr3:181534923-181535018- 35623 35623 237 0 19289 181534923 181535146 Best 35860 35860;46264;72305 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:181534923-181535146&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.458333333333 0.410256410256 1.30638125 1.0 -0.596075 1.90245625 0.162361189575 0.556570501543 10762 Best 10762 10762;35565;68340 -0.45159375 0.8403 -4.422815625 3.971221875 0.14363743832 0.624382034681 8328 Best 8328 8328;26388;66978 0.0 0.0 ENST00000470817.1,ENST00000460739.5 NC,AntiNCintron not annotated potentially spurious 35946 590724 chr9:130712624-130712659+ NoOverlap chr9 130712624 130712659 + 4.82354180018 12 0.815775285471 -1.96144995838 6.78499175857 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;130712623;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A130712624-130712659%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A130712624-130712659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0505214179233 0.0422197227859 0.944993476921 133588011 133588046 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;133588010;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A130712624-130712659%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A133588011-133588046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APEVGARARSLGAGGLGR Same 591677 chr9:130712624-130712659+ 34679 34679 1267 0 1128 130712624 130713721 1714 1714;6568;35946 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:130712624-130713721&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.694444444444 0.48 -0.761716666667 0.84 -3.96923333333 3.20751666667 -0.0246172717516 0.51989487959 57204 2454 2454;17247;57204 1.26004166667 0.3891 -2.94985 4.20989166667 0.0112925871535 0.505927927292 30206 4108 4108;30206;41890 0.0 0.0901541746661 chr16:272863-272931- not annotated putative regulatory region 35962 505816 chr14:105708444-105708479- NoOverlap chr14 105708444 105708479 - 5.16735840837 12 0.475565219603 -3.45867498716 8.62603339553 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105708443;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105708444-105708479-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105708444-105708479&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0166535743432 0.0421809472697 1.03262569501 106174781 106174816 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106174780;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105708444-105708479-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106174781-106174816&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NFPPSQDASGDLYTTSSQLTLPATQCLAGK None NA NA 0 543 105704391 105719646 823 823;838;1248;1547;1711;2216;9225;18253;35962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105704391-105719646&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.694444444444 0.5 7.86966666667 0.9003 -1.72039166667 9.59005833333 0.301753422118 0.955609799022 5574 94 94;95;219;285;641;1432;1674;1887;5574 6.134625 0.468 -4.67805833333 10.8126833333 0.202440816623 0.765568605019 6181 51 51;686;1709;1746;1937;2386;2922;3268;6181 0.0 0.0541271511332 chr12:53382110-53382658+ ENST00000390547.3,ENST00000618756.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 36018 590041 chr9:120793156-120793215+ NoOverlap chr9 120793156 120793215 + 3.96754994541 20 0.895790035859 1.48132999688 2.48621994853 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;120793155;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A120793156-120793215%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A120793156-120793215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132937015743 0.0419325571822 0.561671402243 123555434 123555493 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;123555433;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A120793156-120793215%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A123555434-123555493&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASAPGPGTSRRVHSY*ARSDR Same 590988 chr9:120793156-120793215+ 35370 35370 648 5 936 120793125 120799627 1441 1441;36018;70340;71913 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:120793125-120799627&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.766666666667 1.02857142857 -4.49112 0.9769 -7.93596 3.44484 -0.0512504065438 0.584849759118 71284 1543 1543;12540;63676;71284 -4.55424 0.3954 -10.731345 6.177105 0.0280445252693 0.641649253514 24341 1127 1127;24341;36619;41840 0.0 0.0 ENST00000453291.1,ENST00000474117.1 AntiUTR5,AntiNC protein-coding gene protein-coding gene ENSG00000214654; found after looking at high-scoring intergenic PCCRs 36021 500752 chr14:22509376-22509402+ NoOverlap chr14 22509376 22509402 + 7.58741113875 9 0.915361596433 2.23016648822 5.35724465052 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22509375;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22509376-22509402%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22509376-22509402&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0767228406038 0.0419212423172 0.744639144105 22978360 22978386 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22978359;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22509376-22509402%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22978360-22978386&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIFGTGTLLAVQPST None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.0 13.9941111111 0.9959 4.88613333333 9.10797777778 0.575045749327 0.849948784184 2680 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 14.7003222222 0.4065 5.83131111111 8.86901111111 0.20247953324 0.627758067 6177 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000390505.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 36022 585419 chr8:133516186-133516257+ NoOverlap chr8 133516186 133516257 + 3.10235416342 24 0.297320770072 -2.38072076192 5.48307492534 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;133516185;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A133516186-133516257%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A133516186-133516257&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00470034563772 0.0419199584023 0.937631969697 134528429 134528500 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;134528428;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A133516186-133516257%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A134528429-134528500&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") *SSLLCLEGIILSIFIMSTLPSLLFPLPPWGMPAPLLLLPQLEAS Same 586357 chr8:133516186-133516257+ 32160 32160 3862 1 208 133515503 133516257 255 255;36022 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:133515503-133516257&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.388888888889 0.0 -1.24145416667 0.0884 -2.24636666667 1.0049125 0.0199219366252 0.414130181203 32646 Best 32646 32646;49122 7.1032125 0.4348 -10.4195208333 17.5227333333 0.626235327608 1.03387528661 3077 2179 2179;3077 0.0 0.765204026536 chrM:10470-10766+ ENST00000399640.3,ENST00000518298.5 AntiUTR5intron,AntiNCintron pseudogene mitochondrially encoded NADH dehydrogenase 3 (MT-ND3) pseudogene (ENSG00000283176) 36023 577669 chr7:27143906-27143932+ NoOverlap chr7 27143906 27143932 + 8.2060666879 9 0.745477819316 3.87730010682 4.32876658108 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27143905;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143906-27143932%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27143906-27143932&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0907198010044 0.0419185527504 0.609896516169 27183525 27183551 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27183524;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143906-27143932%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27183525-27183551&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAGLERHPLEAGLIAQLPTGGCK Same 578708 chr7:27143906-27143932+ 35209 35209 814 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 0.81 6.19698888889 0.9947 -1.90792222222 8.10491111111 0.218430798196 0.853744363653 8040 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 9.39925555556 0.8542 -8.19946666667 17.5987222222 0.422908373373 0.943205591527 3846 Best 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NCintron,AntiNCintron not annotated putative regulatory region 36033 527728 chr19:28609647-28610027+ NoOverlap chr19 28609647 28610027 + 1.87120788483 127 0.130111757317 -2.14130629881 4.01251418364 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28609646;381;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28609647-28610027%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28609647-28610027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0396329431267 0.0418752633661 0.922417673269 29100554 29100934 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29100553;381;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28609647-28610027%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29100554-29100934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGAQLVRQKQYQVPREALKGIQVHLKCLRAFGIIVLCQSPWNTPLLPVPKPGTKDYRPVQDLRMVNQVTVTLHPMVPNPYTLLGLLPAEDSWFTCLDLKDAFFSITLAPQSQKLFAFQWEDPGSGVTTLYTGTQLPQGFK Same 529175 chr19:28609647-28610027+ 16617 16617 19416 0 19357 28608133 28611285 Best 36033 36033;38545;39010;41587;43070;45508;47044;48128 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28608133-28611285&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.530183727034 0.112588652482 -0.623590551181 0.0297 -1.59749212598 0.973901574803 0.00454171808562 0.548782876417 39249 26060 26060;29422;36006;38223;39249;43455;47313;48514 -0.623590551181 0.0093 -1.59749212598 0.973901574803 0.0196704989641 0.570282731801 27094 Best 27094 27094;34090;60003;61081;61427;61444;64226;70401 0.0 0.0 ENST00000587961.1,ENST00000585394.1 NCintron,AntiNCintron not annotated potentially spurious 36224 564505 chr5:77847750-77847845+ NoOverlap chr5 77847750 77847845 + 2.91913125291 32 0.896404592966 1.69454684481 1.2245844081 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;77847749;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77847750-77847845%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A77847750-77847845&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.179338147247 0.0411030809804 0.490181666597 77143574 77143669 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;77143573;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77847750-77847845%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A77143574-77143669&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGEAGTVLYFRPVASAKPPVLRQISPIHPVSMVVLLR Same 565493 chr5:77847750-77847845+ 35427 35427 797 0 1311 77844392 77852299 1970 1970;21990;36224;37985;59349;64374;70990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:77844392-77852299&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.572916666667 0.774193548387 -0.7208625 1.0 -0.474596875 -0.246265625 -0.00415959621676 0.345099727108 43677 7731 7731;27249;28623;33111;43677;53467;56140 -7.714884375 0.908 -5.6880625 -2.026821875 -0.0417770868781 0.350563461151 66524 5174 5174;34772;36018;49756;55548;66524;72923 0.0 0.0 ENST00000522370.1 AntiUTR5intron not annotated putative regulatory region 36265 519792 chr17:1716219-1716269- NoOverlap chr17 1716219 1716269 - 4.15628239337 17 0.819045952096 0.117947066531 4.03833532684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;1716218;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1716219-1716269-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A1716219-1716269&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0609681091429 0.0409042493803 0.729219256132 1619513 1619563 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;1619512;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1716219-1716269-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A1619513-1619563&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVHSQLVRHDAAS*SEPGAGVCWVPR Same 521199 chr17:1716219-1716269- 35289 35289 976 8 960 1713893 1724692 1472 1472;3348;6953;15387;36265;37604;43154 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:1713893-1724692&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.705882352941 0.971428571429 -3.32634117647 0.9788 -2.79407647059 -0.532264705882 -0.0533242447987 0.252528838914 71733 5776 5776;16857;18965;26440;56587;71733;73726 -10.5556294118 0.5889 -12.4365529412 1.88092352941 -0.042345398373 0.416356250642 66911 10479 10479;11209;21855;38681;45206;66911;67671 0.0 0.149081513441 chr16:67284275-67284457+ ENST00000571595.5 NC not annotated putative regulatory region 36290 578134 chr7:57168773-57168826+ NoOverlap chr7 57168773 57168826 + 3.36999995179 18 0.314900434882 -4.99259446396 8.36259441574 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57168772;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57168773-57168826%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57168773-57168826&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0131280545202 0.0408258410006 1.04864551197 57236480 57236533 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57236479;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57168773-57168826%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57236480-57236533&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VINLILALVINTLLALSLTVITFWLPLLNIYIKKIQPLR Same 579173 chr7:57168773-57168826+ 29709 29709 6581 0 244 57167069 57169403 311 311;1064;1719;18339;30405;36290 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57167069-57169403&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.240740740741 0.0 1.75015555556 0.3568 -9.68107222222 11.4312277778 0.0467746038717 1.0601637055 23881 1605 1605;1729;3056;18611;18962;23881 7.29375555556 0.7754 -26.8145 34.1082555556 0.770601159927 0.96314216979 2580 484 484;596;1739;1843;2085;2580 0.773406000875 chrM:10059-10404+ 0.954405074164 chrM:10059-10404+ pseudogene MTCO3P10 mitochondrially encoded cytochrome c oxidase III pseudogene 10 (ENSG00000231537) 36320 478912 chr10:113126645-113126686+ NoOverlap chr10 113126645 113126686 + 5.01116435868 14 0.760643712738 0.300342917442 4.71082144124 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113126644;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113126645-113126686%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113126645-113126686&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0551354191582 0.0407396012316 0.769260106758 114886404 114886445 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114886403;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113126645-113126686%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114886404-114886445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPLPFVGGWVVVESGEIPVIVLFPIKRDNSVNGTVREHLVWR Same 480813 chr10:113126645-113126686+ 35915 35915 405 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.452380952381 1.0 3.09180714286 0.8669 2.7783 0.313507142857 0.00522928017876 0.285812092695 38928 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -0.450421428571 0.6933 0.441628571429 -0.89205 -0.0153499852562 0.316246619992 44584 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 36370 543800 chr20:49328656-49328682+ NoOverlap chr20 49328656 49328682 + 6.37020005782 9 0.571089239846 -4.06416654587 10.4343666037 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;49328655;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49328656-49328682%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A49328656-49328682&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0493990016205 0.0404693055268 1.0448669746 47945193 47945219 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;47945192;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49328656-49328682%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A47945193-47945219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGCVEYWSHQGVECQQSLHEWGWAPGVALSGNSQAGLQGPP Same 545191 chr20:49328656-49328682+ 35278 35278 1092 0 1366 49318436 49340428 2047 2047;3687;18732;36370;50172;50543;57104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:49318436-49340428&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.0 3.85846666667 0.7104 -8.70601111111 12.5644777778 0.091443113032 1.02778960529 16849 3238 3238;3385;16849;16867;36672;53077;54154 14.3805333333 0.5801 -11.0774111111 25.4579444444 0.61871176802 1.04737879493 3100 70 70;869;3100;3618;7110;19303;47365 0.0 0.211663127086 chr8:73081019-73081213- pseudogene somatomedin B and thrombospondin type 1 domain containing (SBSPON) transcribed_unprocessed_pseudogene (ENSG00000283529) 36389 479575 chr10:129833677-129833715+ NoOverlap chr10 129833677 129833715 + 4.40125387449 13 0.88422980087 -2.10759217006 6.50884604454 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129833676;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129833677-129833715%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129833677-129833715&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0725771531824 0.0404058844663 0.935461807181 131631941 131631979 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131631940;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129833677-129833715%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131631941-131631979&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTFLRTSLGAPSKRDKAWVVLEESSLSSLSGASLLLALTHLMSMDFMR Same 481480 chr10:129833677-129833715+ 35688 35688 701 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.589743589744 1.2380952381 5.30093846154 0.9498 -7.29201538462 12.5929538462 0.358217821614 1.04526463205 4555 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -10.1731923077 0.9101 -24.1596538462 13.9864615385 -0.00493908144776 0.840273437145 37978 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 not annotated potentially spurious 36480 546428 chr21:8441746-8441910+ NoOverlap chr21 8441746 8441910 + 3.52696183243 55 0.181722466135 3.42271820957 0.104243622856 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441745;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441746-8441910%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441746-8441910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0666750848457 0.0400570040588 0.435927870313 157920 158084 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157919;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441746-8441910%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157920-158084&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APAGAGVGGRGRGWGRRGTVPRPATGRRRAHFHRGGAPRPAPGRLGRPGGEGGSGGPVRPSVRPPPPPSPPPGPASSLGR Same 547841 chr21:8441746-8441910+ 37622 37622 -1142 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.854545454545 0.976744186047 -1.94051090909 0.2417 -2.36060363636 0.420092727273 -0.0262941993981 0.428694717191 58244 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -4.25078363636 0.3501 -4.82390727273 0.573123636364 -0.00223303100816 0.519814887762 36478 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.163566849552 chr16:376136-376455- not annotated LSU-rRNA_Hsa 36523 482355 chr10:117542569-117542634- NoOverlap chr10 117542569 117542634 - 2.70114547556 22 0.779377431907 -1.9600682665 4.66121374206 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117542568;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542569-117542634-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117542569-117542634&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0698708032413 0.0399066480548 0.849656551013 119302080 119302145 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119302079;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542569-117542634-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119302080-119302145&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WKGGDSLKCVRGR*APGNPEAWIR Same 484282 chr10:117542569-117542634- 37487 37487 -964 9 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.621212121212 0.543956043956 -0.694281818182 0.9394 -7.38966818182 6.69538636364 0.122028433526 0.878525161883 13777 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -4.83187727273 0.7998 -14.9863681818 10.1544909091 0.118750164012 0.812325010704 9923 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000551288.5,ENST00000442245.5 NCintron,AntiUTR5 not annotated putative regulatory region 36527 573468 chr6:168002010-168002075+ NoOverlap chr6 168002010 168002075 + 2.29090007462 22 0.100999465934 0.595013707876 1.69588636675 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;168002009;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A168002010-168002075%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A168002010-168002075&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0398055515136 0.0398913749411 0.487836976944 168402690 168402755 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;168402689;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A168002010-168002075%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A168402690-168402755&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPEAWPRAGEKTPEAWPRAGEKTPSGVASGR Same 574496 chr6:168002010-168002075+ 37169 37169 -642 0 327 167976938 168002143 446 446;1208;2908;3125;34549;35422;36527;37043;41869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:167976938-168002143&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.651515151515 0.458333333333 2.00762272727 0.0183 1.8499 0.157722727273 0.0419766417985 0.336318421417 25026 1167 1167;2159;2163;3104;6372;25026;25456;26766;27130 1.76045909091 0.3319 -1.01057727273 2.77103636364 0.0505775668034 0.520880463313 18631 139 139;2661;3543;3691;4447;13096;13690;18631;40134 0.0 0.191777540196 chrX:108732571-108736344- ENST00000443060.6,ENST00000515361.5 UTR5intron,NCintron pseudo-exon KIF25 has 8 exons upstream that are coding as part of this locus in other mammals. At least two of these exons are clearly pseudogenic. This suggests the locus may be a pseudogene, although it has been maintained as coding due to published experimental support for its functionality. 36623 502120 chr14:75278460-75278492+ NoOverlap chr14 75278460 75278492 + 6.85317278179 11 0.816077460344 3.79726368731 3.05590909449 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;75278459;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75278460-75278492%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A75278460-75278492&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.128356769462 0.0394711527964 0.502149604726 75745163 75745195 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;75745162;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75278460-75278492%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A75745163-75745195&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CWLQPASSSRQSLPPYTGCPY Same 504022 chr14:75278460-75278492+ 34566 34566 2057 0 456 75277155 75281681 653 653;2707;13175;15627;32302;36623;37128;61784;65414 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:75277155-75281681&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.846153846154 6.52280909091 0.9511 5.37182727273 1.15098181818 0.0891183923889 0.311322601876 17137 3768 3768;6703;12830;13388;17137;39238;49903;64236;73058 7.90698181818 0.558 3.54119090909 4.36579090909 0.129719654046 0.491146084369 9152 Best 9152 9152;14942;21009;33752;35396;56305;59433;66250;68586 0.0 0.0 not annotated putative regulatory region 36646 514466 chr16:56194047-56194112- NoOverlap chr16 56194047 56194112 - 3.76905445619 22 0.976936681995 1.48947724429 2.2795772119 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;56194046;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56194047-56194112-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A56194047-56194112&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.122494254599 0.0393739122652 0.553713085414 56227959 56228024 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;56227958;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56194047-56194112-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A56227959-56228024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSPSRYSLPSWRRLEPACHACYTSK Same 516118 chr16:56194047-56194112- 39814 39814 -3168 0 1286 56191313 56194112 1942 1942;3444;31465;36646;38456;47043;50502;59548;64898;65693 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:56191313-56194112&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.560606060606 0.88 -2.49777727273 0.9998 0.122154545455 -2.61993181818 -0.0602554395019 0.127025191509 72514 5744 5744;16309;26528;60646;61684;66065;68363;69167;72514;73281 -10.3844318182 0.5145 -3.87123636364 -6.51319545455 -0.0309127126663 0.152573949808 57942 7040 7040;17639;26908;52826;54474;57942;62845;66974;67638;71986 0.0 0.0 ENST00000567381.1,ENST00000262493.10,ENST00000562316.5,ENST00000563661.1 NC,AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 36705 521775 chr17:45161412-45161495- NoOverlap chr17 45161412 45161495 - 2.70256422886 28 0.900217441062 -0.122860791428 2.82542502029 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;45161411;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45161412-45161495-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A45161412-45161495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0502577182711 0.0390940083702 0.679178189856 43238779 43238862 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;43238778;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A45161412-45161495-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A43238779-43238862&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSAAIAAILGWEEAAEGLAAQ*EHPVGGGPGAGRGRAEWAT Same 523200 chr17:45161412-45161495- 36264 36264 441 13 1505 45161411 45169317 2238 2238;3807;36705 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:45161411-45169317&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.785714285714 0.711111111111 -0.979814285714 0.9594 -4.40258214286 3.42276785714 0.0534976111674 0.655398300727 22428 4076 4076;22428;69281 -2.17275357143 0.3663 -5.78040357143 3.60765 0.0406324764793 0.586766048878 20895 15798 15798;20895;55189 0.0 0.0 ENST00000589950.1,ENST00000585340.1,ENST00000307275.7 NC,AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 36708 574598 chr6:34238127-34238228- NoOverlap chr6 34238127 34238228 - 2.90364416513 34 0.586363371167 0.894326441428 2.00931772371 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34238126;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34238127-34238228-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34238127-34238228&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0491111410103 0.0390854649678 0.609924504344 34205904 34206005 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34205903;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34238127-34238228-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34205904-34206005&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPLLQARESSAPRPHAPPRGCTRPHFLPEGAPKPALGQETWR Same 575630 chr6:34238127-34238228- 39736 39736 -3028 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.735294117647 0.667151162791 -0.778182352941 0.9224 -3.14897647059 2.37079411765 0.0375249770938 0.592183945885 26270 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -4.09469411765 0.3899 -8.66189705882 4.56720294118 0.0509948212356 0.649102313741 18559 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0 ENST00000311487.9,ENST00000478214.1 AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000186577 36754 561780 chr4:68050094-68050129- NoOverlap chr4 68050094 68050129 - 5.69750000536 12 0.32671091783 -7.42660843333 13.1241084387 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;68050093;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A68050094-68050129-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A68050094-68050129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0168045142016 0.0389321447679 0.994419669874 68915812 68915847 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;68915811;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A68050094-68050129-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A68915812-68915847&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STIYLILTVTIFILLIANISNTTLSLSCM Same 562772 chr4:68050094-68050129- 28957 28957 7797 0 1383 68049815 68050392 2071 2071;7458;36754 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:68049815-68050392&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.194444444444 0.0 -3.37683333333 0.0915 -5.58288333333 2.20605 0.0328902692991 0.43942366381 27671 Best 27671 27671;35553;46087 16.789325 0.7058 -26.8841333333 43.6734583333 0.85575378797 0.885471473171 2294 227 227;1891;2294 0.0 0.877138355551 chrM:4470-5511+ ENST00000500538.6 AntiNCintron pseudogene mitochondrial pseudogene region (ENSG00000283156) 36821 539516 chr2:89622214-89622309- NoOverlap chr2 89622214 89622309 - 3.83695302345 32 0.311362726024 1.69577414278 2.14117888067 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89622213;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89622214-89622309-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89622214-89622309&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0112534174252 0.0387026005088 0.613161673788 91884478 177252 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91884477;-91707225;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89622214-89622309-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91884478-177252&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LKIINQNSVAVLQTPPDIQSEHSRDGDMDDSR Different 540872 chr2:89622214-89622426- 9554 9554 27267 0 1126 89622214 89637657 1710 1710;1943;6332;11544;19922;20755;36821;56146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89622214-89637657&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4375 0.654545454545 12.8334375 0.7318 8.3465125 4.486925 0.675328243941 0.778885649615 2184 23 23;45;328;857;1530;2184;2340;8004 36.449459375 0.8525 17.771421875 18.6780375 1.0492031414 0.999477195994 334 Best 334 334;1274;1390;1454;1567;1631;1812;2090 0.998385719033 chr7:152220523-152220735- 0.972169889762 chr7:152220523-152220735- pseudogene lysine (K)-specific methyltransferase 2C (KMT2C) pseudogene (ENSG00000283132) 36825 664157 chr19:6424412-6424450+ Extension chr19 6424412 6424450 + 0.865753916594 13 0.414898674226 -0.459115280555 1.32486919715 chr19:6424412-6424666+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;6424411;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6424412-6424450%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A6424412-6424450&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.187953424584 0.038689543295 0.391789645223 6424423 6424461 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;6424422;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A6424412-6424450%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A6424423-6424461&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PPPPPPPARARERAPQALGLLTWR Same 664773 chr19:6424412-6424450+ 35604 35604 1221 0 18 6396383 6424885 18 18;152;1552;1681;2470;11355;12316;12885;15770;20124;36825 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:6396383-6424885&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.846153846154 1.2380952381 -1.4432 0.3846 -0.221392307692 -1.22180769231 0.00742505440004 0.179521816779 37923 228 228;1347;1830;2200;3049;3131;9882;24431;37923;50538;67562 -7.4312 0.3591 -5.39926923077 -2.03193076923 -0.0232976480085 0.260669855298 50962 237 237;2087;2298;2594;2633;2795;14442;22727;50962;60088;60354 0.0 0.0610095966995 chr9:111484354-111484548- ENST00000398148.7 AntiCDSintron pseudogene unitary pseudogene ENSG00000214347 36827 525524 chr18:26549130-26549339- NoOverlap chr18 26549130 26549339 - 2.0212171776 70 0.616240830963 0.69558427568 1.32563290192 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26549129;210;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26549130-26549339-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26549130-26549339&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0670653533452 0.0386848401009 0.609299663033 24129094 24129303 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;24129093;210;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26549130-26549339-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A24129094-24129303&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DVADVGRVSLLCKSRKGSWEPRGWPQAPAPRRQQVGGGAAAAASPIPLPSLARCALAAGAERVRGLAVPPPPCSLTCLLR Same 526967 chr18:26549130-26549339- 31610 31610 5217 0 513 26546760 26549891 768 768;8399;25501;30998;36827;39211;40894;58515;70807;71876 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26546760-26549891&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 0.84520123839 -0.297217142857 0.8406 -2.77568 2.47846285714 0.157207280373 0.649266055557 11084 2222 2222;11084;12141;14614;15029;28171;62885;67707;71661;73517 -5.06759714286 0.3844 -8.92304142857 3.85544428571 0.0618876230087 0.663564809008 16512 2942 2942;16429;16512;26392;33196;52681;55735;64991;73449;73633 0.0 0.0 ENST00000408011.7,ENST00000580191.5,ENST00000317932.11 UTR5,CDSintron,UTR5intron coding exon(s) KCTD1 5' extension 36923 501022 chr14:28766778-28766942+ NoOverlap chr14 28766778 28766942 + 2.13809089823 55 0.30393502431 -0.26713638282 2.40522728105 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28766777;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28766778-28766942%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28766778-28766942&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0056523391308 0.0383339382245 0.742038836054 29235984 29236148 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29235983;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28766778-28766942%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29235984-29236148&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CAPVARKINCGYSRLDRCLPSLAAAAPGRARPPPGSPPLWAAAAAAVTAAARGGGGGGSSGGGSGGWGGRPR Same 502914 chr14:28766778-28766942+ 33589 33589 3334 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.690909090909 0.813559322034 0.958270909091 0.4511 -0.182736363636 1.14100727273 0.0252693771588 0.550823435492 30517 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -6.07659636364 0.3468 -5.99445454545 -0.0821418181818 -0.0270340211818 0.485679030125 54395 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.147492517338 chr16:86578724-86579761+ ENST00000313071.6 UTR5 not annotated putative regulatory region 36938 547966 chr22:18990698-18990922+ NoOverlap chr22 18990698 18990922 + 2.09160802109 75 0.116430202691 0.00941466371218 2.08219335737 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;18990697;225;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A18990698-18990922%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A18990698-18990922&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0551194881654 0.0382638635817 0.71036725025 18978211 18978435 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;18978210;225;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A18990698-18990922%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A18978211-18978435&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELSWGTQVLLPESSRSAHVAEGPLVRPASRRTTPQTTRPGPGTEGEAPISR*KRHPDDTG*FTFTLVIVYCTPGQLPPEPYDPNRRSLW Same 549386 chr22:18990698-18990922+ 30345 30345 6593 36 6645 18985824 18997940 9432 9432;26026;32176;36938;37917 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:18985824-18997940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.657777777778 0.551158846806 1.004148 0.0046 0.218212 0.785936 0.0183678875536 0.510695055143 33239 27214 27214;29320;33193;33239;34296 13.3656333333 0.4221 -0.365597333333 13.7312306667 0.874567375157 0.987510311324 2214 175 175;616;1654;2214;58981 0.0 0.654173820503 chr22:46381846-46382050- ENST00000438934.5 NC pseudogene DiGeorge syndrome critical region gene 5 (non-protein coding) unprocessed pseudogene (ENSG00000237517) 37042 561534 chr4:41857625-41857651- NoOverlap chr4 41857625 41857651 - 6.41274438964 9 0.980193789578 -0.815444462829 7.22818885247 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41857624;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41857625-41857651-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41857625-41857651&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0500665158226 0.0378099768477 0.936418772221 41859642 41859668 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41859641;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41857625-41857651-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41859642-41859668&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISSDIMAWCKAVCNEL Same 562525 chr4:41857625-41857651- 39436 39436 -2394 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.518518518519 0.0 1.15468888889 0.9792 -1.0074 2.16208888889 -0.0341380982553 0.399438103853 63140 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -2.68016666667 0.9121 -8.89291111111 6.21274444444 -0.015953590453 0.560347600223 45036 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 not annotated putative regulatory region 37043 573467 chr6:168001870-168001959+ NoOverlap chr6 168001870 168001959 + 2.25100673338 30 0.10098268101 0.300780124466 1.95022660891 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;168001869;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A168001870-168001959%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A168001870-168001959&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0404674782257 0.037806925403 0.578622656548 168402550 168402639 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;168402549;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A168001870-168001959%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A168402550-168402639&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KTPEAWPRAGEKTPEAWPRAGEKTPEAWPR Same 574495 chr6:168001870-168001959+ 36684 36684 359 0 327 167976938 168002143 446 446;1208;2908;3125;34549;35422;36527;37043;41869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:167976938-168002143&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.677777777778 0.720823798627 1.06623333333 0.0254 1.37412666667 -0.307893333333 0.0345109513516 0.341479543551 27130 1167 1167;2159;2163;3104;6372;25026;25456;26766;27130 1.46088666667 0.3461 -1.0885 2.54938666667 0.0808527828939 0.555836830529 13690 139 139;2661;3543;3691;4447;13096;13690;18631;40134 0.0 0.16001137291 chrX:108732571-108736344- ENST00000443060.6,ENST00000515361.5 UTR5intron,NCintron pseudo-exon KIF25 has 8 exons upstream that are coding as part of this locus in other mammals. At least two of these exons are clearly pseudogenic. This suggests the locus may be a pseudogene, although it has been maintained as coding due to published experimental support for its functionality. 37044 507526 chr15:81385501-81385569+ NoOverlap chr15 81385501 81385569 + 5.00289573099 23 0.358076169057 3.28953047226 1.71336525873 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;81385500;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A81385501-81385569%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A81385501-81385569&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0249144448044 0.0378012423049 0.478270308768 81677842 81677910 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;81677841;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A81385501-81385569%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A81677842-81677910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") Y*GEGIVYGTLEEVWDCVKPAVGHGPPSSP Same 509255 chr15:81385501-81385569+ 38406 38406 -1362 2 8075 81385501 81385784 11643 11643;37044 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:81385501-81385784&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.536231884058 0.297413793103 14.760726087 0.783 6.53403043478 8.22669565217 0.715236124274 0.945513685268 2022 47 47;2022 14.760726087 0.2447 6.53403043478 8.22669565217 0.366014115708 0.728960364028 4143 2613 2613;4143 0.951703687288 chr15:81322408-81322540- 0.951873566177 chr15:81322408-81322540- pseudogene STARD5 pseudogene (ENSG00000284709); found after looking at high-scoring intergenic PCCRs 37061 486966 chr11:3500470-3500577- NoOverlap chr11 3500470 3500577 - 3.17104996741 36 0.132967964531 1.19145279936 1.97959716804 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;3500469;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A3500470-3500577-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A3500470-3500577&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0323601615829 0.0377450048618 0.617478920691 3521700 3521807 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;3521699;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A3500470-3500577-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A3521700-3521807&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQDVDTPNLDRLAGEGVKAKYLMPPLVTMTSPSHFTAIPGK Same 488930 chr11:3500470-3500577- 36077 36077 984 0 19761 3500470 3500577 Best 37061 37061 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:3500470-3500577&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.401860465116 4.89423333333 0.4308 -3.25115833333 8.14539166667 0.281220660477 1.04025042342 6060 Best 6060 6060 39.4138333333 0.8104 7.872925 31.5409083333 0.97606939294 1.03345772838 1499 Best 1499 1499 0.0 0.426919823437 chr17:79731140-79731392+ ENST00000527970.1,ENST00000534291.1 NC,AntiNCintron pseudogene ectonucleotide pyrophosphatase/phosphodiesterase 7 (ENPP7) pseudogene (ENSG00000284605) 37070 476450 chr1:244048982-244049008- NoOverlap chr1 244048982 244049008 - 3.6738666594 9 0.107896543832 0.500599953863 3.17326670554 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244048981;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048982-244049008-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244048982-244049008&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0360038528091 0.0376821724031 0.54290128554 244212284 244212310 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244212283;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048982-244049008-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244212284-244212310&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAEGAPGQGPGAGAGTHTERP Same 478344 chr1:244048982-244049008- 40680 40680 -3610 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.814814814815 0.892561983471 1.88486666667 0.137 -2.22656666667 4.11143333333 0.0267003159561 0.563106801783 29977 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 2.63642222222 0.3003 0.976155555556 1.66026666667 -0.0212691941101 0.373887382214 49139 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.191033967739 chr19:45060554-45060627+ ENST00000622512.1 AntiUTR5 not annotated putative regulatory region 37092 546387 chr21:8399326-8399919+ NoOverlap chr21 8399326 8399919 + 1.87262469891 198 0.133496789825 1.76121967783 0.111405021088 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8399325;594;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399326-8399919%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8399326-8399919&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00377393848197 0.0375909062351 0.669456163848 159735 160328 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159734;594;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8399326-8399919%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159735-160328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPCEQQLNMGQSVLRDGRAPFRRDGRWPPLPSADRKGVGFRSPNPEWRRWAPRGVQCGNATDPGEAGGSPGESSLFFVKGRAPWNGFAPREGPVPWKASRFRRRPVSSRWPLKIRGRGCKSRAGPYPYPQQVSKVNSLWHVGTM*VREVGKPDP*LRDKDWL*GLGRSGWGAKRGWARAAAGRGAAAPPTPGAPPSRPSPAPPR Same 547800 chr21:8399326-8399919+ 35200 35200 1892 56 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.680134680135 1.00407676245 -0.0812808080808 0.2246 0.0143353535354 -0.0956161616162 0.0590850137952 0.731314678555 21416 Best 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -3.38580353535 0.1915 -2.58918080808 -0.796622727273 0.031835266083 0.463170981372 23207 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0698680556488 chr3:9840184-9840335- ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 37093 546448 chr21:8443561-8444154+ NoOverlap chr21 8443561 8444154 + 1.87262469891 198 0.133496789825 1.76121967783 0.111405021088 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8443560;594;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443561-8444154%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8443561-8444154&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00377393848197 0.0375909062351 0.669456163848 159735 160328 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159734;594;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443561-8444154%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159735-160328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPCEQQLNMGQSVLRDGRAPFRRDGRWPPLPSADRKGVGFRSPNPEWRRWAPRGVQCGNATDPGEAGGSPGESSLFFVKGRAPWNGFAPREGPVPWKASRFRRRPVSSRWPLKIRGRGCKSRAGPYPYPQQVSKVNSLWHVGTM*VREVGKPDP*LRDKDWL*GLGRSGWGAKRGWARAAAGRGAAAPPTPGAPPSRPSPAPPR Same 547861 chr21:8443561-8444154+ 35201 35201 1892 56 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.680134680135 1.00407676245 -0.0559838383838 0.2149 0.0213868686869 -0.0773707070707 0.0632461375797 0.732296337578 20724 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -2.66206515152 0.2112 -1.82283636364 -0.839228787879 0.0447664834291 0.467963602903 19823 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0359834380586 chr19:18613872-18614016+ not annotated LSU-rRNA_Hsa 37128 502119 chr14:75277155-75277238+ NoOverlap chr14 75277155 75277238 + 3.41458214181 28 0.604360265507 1.5413214543 1.8732606875 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;75277154;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75277155-75277238%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A75277155-75277238&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0803193090674 0.0374688635637 0.549508784555 75743858 75743941 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;75743857;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75277155-75277238%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A75743858-75743941&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGGLARPTARPAARRCLETALAALCCCKQPLPCYYL Same 504021 chr14:75277155-75277238+ 39484 39484 -2356 0 456 75277155 75281681 653 653;2707;13175;15627;32302;36623;37128;61784;65414 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:75277155-75281681&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.761904761905 1.07586206897 -1.6603 0.8985 -2.80993571429 1.14963571429 -0.0358865133633 0.444756370717 64236 3768 3768;6703;12830;13388;17137;39238;49903;64236;73058 -5.18447857143 0.4175 -5.32625 0.141771428571 -0.0291105857715 0.43073860087 56305 9152 9152;14942;21009;33752;35396;56305;59433;66250;68586 0.0 0.0 not annotated putative regulatory region 37177 472693 chr1:63000280-63000312- NoOverlap chr1 63000280 63000312 - 6.59176367521 11 0.891996643015 2.71964559772 3.87211807749 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;63000279;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A63000280-63000312-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A63000280-63000312&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.111814333876 0.0372826101581 0.611818573698 63465951 63465983 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;63465950;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A63000280-63000312-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A63465951-63465983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGFERWRKCRHQPALLLLSN Same 474572 chr1:63000280-63000312- 35061 35061 2116 0 668 62997933 63000329 1026 1026;13743;18049;27623;33268;34189;37177;59194;68808 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:62997933-63000329&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.484848484848 1.65 -2.0073 1.0 -4.6214 2.6141 -0.044807341254 0.463078373151 69109 6220 6220;8200;13946;16945;28973;32781;63612;68420;69109 -8.35731818182 0.9331 -11.1393454545 2.78202727273 -0.0495176640877 0.422371474169 71146 6223 6223;11538;12991;22844;28460;29330;40736;45828;71146 0.0 0.0 not annotated putative regulatory region 37187 572843 chr6:133953657-133953686+ NoOverlap chr6 133953657 133953686 + 5.47935992479 10 0.889771877623 -1.92347999811 7.4028399229 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;133953656;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A133953657-133953686%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A133953657-133953686&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0774650436951 0.0372641370561 0.965577962592 134274795 134274824 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;134274794;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A133953657-133953686%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A134274795-134274824&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YLGISLGITGWGWGVR Same 573870 chr6:133953657-133953686+ 35264 35264 1923 0 211 133953198 133953686 259 259;12601;37187 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:133953198-133953686&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 1.25 0.41156 0.902 -1.23537 1.64693 -0.0385873397092 0.368419127353 65751 1434 1434;4264;65751 -2.10711 0.3166 -1.44702 -0.66009 -0.0253139166289 0.296344035029 52796 3973 3973;16045;52796 0.0 0.0 ENST00000237264.8 UTR5intron not annotated putative regulatory region 37193 572206 chr6:97885333-97885542+ NoOverlap chr6 97885333 97885542 + 2.17079857162 70 0.979618524453 2.05341858715 0.117379984472 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;97885332;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A97885333-97885542%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A97885333-97885542&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.272070314849 0.0372553578892 0.442882221782 98333209 98333418 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;98333208;210;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A97885333-97885542%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A98333209-98333418&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDVCLAEMTWLPM*KYI*QQSFRVSAFLHFPRCSIHPAAVTEGKRTIYQGIEIYSSHLHEFFNEQPT*SQLTSRKWM Same 573231 chr6:97885333-97885542+ 32097 32097 5096 20 7407 97885333 97885567 10594 10594;37193;66026 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:97885333-97885567&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.452380952381 0.56 -0.849775714286 0.9777 -1.37749 0.527714285714 0.102673624226 0.451446464971 15549 Best 15549 15549;28414;41858 -4.76987 0.9208 -4.53191571429 -0.237954285714 0.0866161155525 0.488462477522 12957 Best 12957 12957;14696;29076 0.0 0.0 ENST00000606913.5,ENST00000607823.5 NC,NCintron not annotated potentially spurious 37203 484850 chr11:64246774-64246932+ NoOverlap chr11 64246774 64246932 + 2.41127925999 53 0.470508773218 0.840322622994 1.57095663699 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64246773;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64246774-64246932%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64246774-64246932&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0264435808963 0.0372048819558 0.62821162624 64014246 64014404 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64014245;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64246774-64246932%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64014246-64014404&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SARLRGEGGGGGARGQLQHAEPPGLAWPRPAPSPPIRPPFVPRGRRPSCSRRSAFSVSLFLRPPTTPP Same 486797 chr11:64246774-64246932+ 36847 36847 356 0 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.849056603774 0.95104120514 0.571133962264 0.362 -1.00959622642 1.58073018868 0.018403585146 0.585566964451 33224 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 -6.91451886792 0.3481 -7.83271320755 0.918194339623 -0.0298467317945 0.523727979353 56986 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.02701562799 chr17:36949126-36949216+ ENST00000544553.1,ENST00000309318.7 NCintron,AntiUTR5 under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 37227 469153 chr1:221742886-221742912+ NoOverlap chr1 221742886 221742912 + 8.34636685583 9 0.727314496919 4.8309776783 3.51538917753 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;221742885;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A221742886-221742912%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A221742886-221742912&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0934510473481 0.0371309536948 0.50403255788 221916228 221916254 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;221916227;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A221742886-221742912%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A221916228-221916254&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EASASRPPARRCRCPSGCPGLTAAR Same 471032 chr1:221742886-221742912+ 36590 36590 637 0 850 221741882 221742912 1318 1318;6749;37227 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:221741882-221742912&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 0.5625 3.15293333333 0.7003 -0.271244444444 3.42417777778 -0.0123683931946 0.500225320157 48743 7919 7919;8066;48743 -2.0478 0.2963 -0.784288888889 -1.26351111111 -0.0212205444837 0.267060246711 49102 8028 8028;8463;49102 0.0 0.0 not annotated putative regulatory region 37245 482204 chr10:113126858-113126911- NoOverlap chr10 113126858 113126911 - 3.5501500484 18 0.72022244263 -1.34732216597 4.89747221437 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113126857;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113126858-113126911-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113126858-113126911&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0206766187787 0.0370553289727 0.838418897432 114886617 114886670 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114886616;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113126858-113126911-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114886617-114886670&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPARPPAAGRAYHLERVAALSFPLPAR Same 484128 chr10:113126858-113126911- 39072 39072 -1827 0 719 113118964 113126911 1110 1110;6516;16816;37245;38490;54651;58469;62875;67669;70173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118964-113126911&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 1.11212814645 -2.67638333333 0.5916 -5.25169444444 2.57531111111 -0.0353886366076 0.508869235531 63931 4406 4406;18572;33940;40718;63931;65767;72176;72358;72407;73429 -7.32936111111 0.4517 -10.7546777778 3.42531666667 -0.0244155927799 0.502111808005 51984 6655 6655;10141;25415;26332;35901;38764;51629;51984;53928;72240 0.0 0.0 ENST00000346198.5 AntiCDSintron not annotated putative regulatory region 37275 577656 chr7:27141226-27141282+ NoOverlap chr7 27141226 27141282 + 4.15181578304 19 0.993648231359 1.05776313418 3.09405264886 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27141225;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27141226-27141282%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27141226-27141282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0892411118416 0.0369075647823 0.630586981287 27180845 27180901 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27180844;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27141226-27141282%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27180845-27180901&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCAYKSHFQSSCKGSYKGTQGHTAWSHSFHHR Same 578695 chr7:27141226-27141282+ 44945 44945 -7670 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.543859649123 0.475 0.733915789474 0.9993 -1.90144736842 2.63536315789 0.063959945353 0.531308462288 20591 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -6.28323157895 0.7433 -10.9263736842 4.64314210526 -5.14697856369e-06 0.563892936408 35358 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222726.3,ENST00000467897.2 NCintron,AntiUTR3,AntiNCintron not annotated putative regulatory region 37310 530523 chr19:28711082-28711165- NoOverlap chr19 28711082 28711165 - 2.82998573248 28 0.32216427427 -1.36992505938 4.19991079186 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28711081;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28711082-28711165-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28711082-28711165&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00390850103402 0.0368098621993 0.842523182615 29201989 29202072 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29201988;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28711082-28711165-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29201989-29202072&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FFYQNIWKSWDEEKDDAYDCFVRRVKPQLR Same 531987 chr19:28711082-28711165- 33915 33915 3395 0 1328 28700946 28722771 1997 1997;8891;9090;18927;37310;39699 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28700946-28722771&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.369047619048 0.4 4.14614285714 0.7183 -4.045575 8.19171785714 0.374894092917 1.01219985633 4332 1227 1227;2244;3295;3647;4332;8998 19.3412464286 0.5909 1.47526071429 17.8659857143 1.00919579846 1.01049848539 954 214 214;954;1173;1175;1695;2440 0.849249992792 chr16:46608297-46608389- 0.950955440097 chr16:46608297-46608389- ENST00000590072.1 NCintron not annotated potentially spurious 37325 546350 chr21:8394828-8394878+ NoOverlap chr21 8394828 8394878 + 1.69843534862 17 0.161788716402 0.450793810189 1.24764153843 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8394827;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394828-8394878%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8394828-8394878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0508283656284 0.0367288081179 0.398649154186 155215 155265 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155214;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394828-8394878%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155215-155265&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGCRRARGRFSAASRRVWGSR None NA NA 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.843137254902 1.50738916256 -1.33724705882 0.2212 -0.447435294118 -0.889811764706 0.0162588131807 0.222649341337 34103 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -1.19439411765 0.2665 4.82872352941 -6.02311764706 -0.0256054695178 0.156323793051 53095 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.079775982099 chr22:19723854-19724464+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 37328 547164 chr21:8393249-8393464- NoOverlap chr21 8393249 8393464 - 2.46003194484 72 0.175221679679 1.23460138041 1.22543056444 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8393248;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393249-8393464-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8393249-8393464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0500726492364 0.0367277355977 0.60129446015 153633 153848 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153632;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393249-8393464-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153633-153848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLRAPRDTQLRASRGRREARGGDGRWLASRRTARPLPRSNYELFNCSNFNIRYWSWNYRGCWHQTCPPMDPR Same 548572 chr21:8393249-8393464- 34517 34517 2811 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.634259259259 1.01278772379 -1.0565875 0.2377 -1.25482361111 0.198236111111 -0.0219493254304 0.413033660737 55436 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -1.0565875 0.0743 -1.25482361111 0.198236111111 -0.0349136401333 0.517134606072 61389 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0 ENST00000625598.1,ENST00000623860.2 NC,AntiNCintron not annotated SSU-rRNA_Hsa 37329 547260 chr21:8437459-8437674- NoOverlap chr21 8437459 8437674 - 2.46003194484 72 0.175221679679 1.23460138041 1.22543056444 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8437458;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437459-8437674-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8437459-8437674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0500726492364 0.0367277355977 0.60129446015 153633 153848 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153632;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437459-8437674-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153633-153848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLRAPRDTQLRASRGRREARGGDGRWLASRRTARPLPRSNYELFNCSNFNIRYWSWNYRGCWHQTCPPMDPR Same 548663 chr21:8437459-8437674- 34518 34518 2811 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.634259259259 1.01278772379 -4.91219861111 0.2974 -4.75853888889 -0.153659722222 -0.053764372603 0.291793918101 71805 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -6.55424027778 0.2175 -6.47356666667 -0.0806736111111 -0.0345386125142 0.49031133482 61085 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 ENST00000627981.1 NC not annotated SSU-rRNA_Hsa 37333 512306 chr16:72786749-72786784+ NoOverlap chr16 72786749 72786784 + 6.44347494841 12 0.952194755983 3.98421654105 2.45925840735 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72786748;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72786749-72786784%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72786749-72786784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.141763686959 0.0366825110837 0.443540538905 72820648 72820683 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72820647;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72786749-72786784%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72820648-72820683&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TVTRWTAFPYSACR Same 513950 chr16:72786749-72786784+ 38308 38308 -975 0 1044 72786749 72802320 1595 1595;21079;37333;39725;51719;54149;65275;67341;70055 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72786749-72802320&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.36 4.25595 0.9851 3.862425 0.393525 0.0524522518334 0.270275479681 22628 2453 2453;8633;10458;20402;20517;20622;22628;49851;70811 -0.93785 0.8825 -2.76606666667 1.82821666667 -0.00691631858756 0.408377986536 39101 1956 1956;9416;10906;18989;19008;25678;39101;45598;59430 0.0 0.0 ENST00000563328.4,ENST00000268489.9 NCintron,AntiUTR3 not annotated putative regulatory region 37460 561556 chr4:41882589-41882627- NoOverlap chr4 41882589 41882627 - 5.24714615483 13 0.826315943917 0.38580757838 4.86133857645 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41882588;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41882589-41882627-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41882589-41882627&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0559459989082 0.0361805341234 0.773046444776 41884606 41884644 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41884605;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41882589-41882627-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41884606-41884644&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SYY*RLIMYKMVQ Same 562547 chr4:41882589-41882627- 35572 35572 1888 4 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.410256410256 0.609375 -0.3542 0.989 -3.58224615385 3.22804615385 -0.0113601039338 0.530426747214 48017 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -2.63376923077 0.8839 -5.54082307692 2.90705384615 -0.0109036542236 0.458932482348 41489 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 ENST00000504870.1 NC not annotated putative regulatory region 37462 595159 chrX:49879268-49879330+ NoOverlap chrX 49879268 49879330 + 4.22364278634 21 0.734738616588 3.17264770184 1.0509950845 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;49879267;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A49879268-49879330%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A49879268-49879330&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.164848563799 0.036176521541 0.377736459138 49643871 49643933 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;49643870;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A49879268-49879330%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A49643871-49643933&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLAAEAASTRGLRREDSRGRR Same 595801 chrX:49879268-49879330+ 38661 38661 -1199 0 490 49878962 49880307 724 724;6474;8567;14080;37462 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:49878962-49880307&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.730158730159 0.614035087719 -0.210152380952 0.908 -1.33314761905 1.1229952381 -0.0117290532226 0.409886208507 48276 671 671;7761;13348;22106;48276 -1.53998095238 0.4404 -7.17075238095 5.63077142857 0.0747940252707 0.633561306353 14478 433 433;14478;35334;44633;49684 0.0 0.147978074444 chrX:55486804-55488939- pseudo-exon USP27X pseudogenic sequence upstream of ATG 37522 520377 chr17:8222833-8222889- NoOverlap chr17 8222833 8222889 - 4.46681057466 19 0.733592736706 2.91134745824 1.55546311642 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8222832;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8222833-8222889-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8222833-8222889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.145394738453 0.0359123526372 0.423829396405 8126151 8126207 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8126150;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8222833-8222889-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8126151-8126207&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GYDSRFGCERSRVQIPDEPSFTFY Same 521787 chr17:8222833-8222889- 38248 38248 -726 0 1341 8221594 8227025 2014 2014;17863;26203;31694;31965;37522;40474;40990;66443;67460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8221594-8227025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.631578947368 1.06875 1.10265263158 1.0 -4.12461578947 5.22726842105 0.150002324313 0.75505586726 11583 2913 2913;4601;11583;16441;20948;21333;25351;28719;65647;67294 1.10632631579 0.3437 -4.06692105263 5.17324736842 0.0656767120138 0.602653504429 15863 5986 5986;8484;15863;24228;24536;28672;31456;32683;52097;52689 0.0 0.0 ENST00000315707.3 NC not annotated 6 tRNAs 37577 584691 chr8:78646425-78646454+ NoOverlap chr8 78646425 78646454 + 7.6927999258 10 0.324498359655 -4.10398008823 11.796780014 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78646424;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78646425-78646454%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78646425-78646454&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0137280761108 0.0357110808468 1.03391380443 79558660 79558689 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79558659;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78646425-78646454%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79558660-79558689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EQDGVQLISTGIYGPLPRGTFGLIIGR Same 585622 chr8:78646425-78646454+ 33774 33774 3803 0 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.0 1.64866 0.0741 0.81371 0.83495 0.0343971513561 0.297917917238 27166 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 11.88318 0.1506 -1.19352 13.0767 0.0848171153873 0.807515246249 13170 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 37604 519788 chr17:1713893-1713988- NoOverlap chr17 1713893 1713988 - 2.9928437518 32 0.876046196689 2.09381247312 0.899031278677 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;1713892;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1713893-1713988-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A1713893-1713988&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.198782353297 0.0356560000219 0.445553148715 1617187 1617282 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;1617186;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1713893-1713988-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A1617187-1617282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLMASEWVSVAATCPAQIFPIFPPFPLGACSSHALTWLSRSSSSVASFMS*PS*SCQLKNCCPLPLASR Same 521195 chr17:1713893-1713988- 37236 37236 368 17 960 1713893 1724692 1472 1472;3348;6953;15387;36265;37604;43154 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:1713893-1724692&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.552083333333 0.274285714286 0.40421875 0.9835 -1.23024375 1.6344625 0.0914044068522 0.525245290903 16857 5776 5776;16857;18965;26440;56587;71733;73726 -3.7488 0.7484 -8.807140625 5.058340625 0.103191360331 0.663260344941 11209 10479 10479;11209;21855;38681;45206;66911;67671 0.0 0.0810165721108 chr12:49049682-49050790- ENST00000334146.7 NC not annotated putative regulatory region 37629 530501 chr19:21454201-21454233- NoOverlap chr19 21454201 21454233 - 6.69710004736 11 0.338200961318 -2.08899091591 8.78609096327 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;21454200;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A21454201-21454233-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A21454201-21454233&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0169053212987 0.0355698625947 1.02577622162 21637003 21637035 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;21637002;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A21454201-21454233-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A21637003-21637035&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QQRVHTGVCFCR Same 531965 chr19:21454201-21454233- 34467 34467 3162 0 19988 21454201 21454233 Best 37629 37629 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:21454201-21454233&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.424242424242 0.0 -8.72601818182 0.1174 -6.05062727273 -2.67539090909 0.0444534863025 0.175530955936 24435 Best 24435 24435 -8.28897272727 0.0965 -6.07053636364 -2.21843636364 0.0219403542775 0.240607901017 26347 Best 26347 26347 0.0 0.535048241154 chr19:21293743-21294458- ENST00000594557.1,ENST00000596705.5,ENST00000600810.1 NC,NCintron,AntiNCintron not annotated potentially spurious 37661 549341 chr22:50697426-50697539+ NoOverlap chr22 50697426 50697539 + 4.70937903696 38 0.222655631985 4.26511841542 0.444260621541 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50697425;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50697426-50697539%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50697426-50697539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0498601830748 0.0354388476239 0.418297122486 51135854 51135967 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51135853;114;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50697426-50697539%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51135854-51135967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGREGGREGRHHRPQREEPGRGGGGARGGRGMERAWRAQELYSNSSSVPR Same 550703 chr22:50697426-50697539+ 38478 38478 -817 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.833333333333 0.912429378531 -0.640807894737 0.3562 -1.45438947368 0.813581578947 -0.0229975271495 0.463400553163 56182 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -3.45099473684 0.3799 -4.75137631579 1.30038157895 0.00718469724584 0.523223818631 31967 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.118373713417 chr19:830708-830986+ ENST00000262795.5 NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 37684 531732 chr19:48498271-48498297- NoOverlap chr19 48498271 48498297 - 7.50383332041 9 0.57978010054 -0.455355445544 7.95918876595 ENST00000270238.3,ENST00000600059.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48498270;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48498271-48498297-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48498271-48498297&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00489261052353 0.035365191683 0.968782965203 49001528 49001554 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;49001527;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48498271-48498297-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A49001528-49001554&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETSPKPEPPSERGDSAGERGPESPR Same 533207 chr19:48498271-48498297- 40198 40198 -2514 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.964285714286 9.20881111111 0.9297 1.42778888889 7.78102222222 0.235423969976 0.816454301693 7445 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 15.8414111111 0.6475 4.11888888889 11.7225222222 0.469726739063 0.730997308342 3653 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.170931651027 chr6:142769552-142774738- ENST00000270238.3 CDS coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 37884 538853 chr2:62094317-62094415- NoOverlap chr2 62094317 62094415 - 1.6294818367 33 0.102006561379 -0.664363609119 2.29384544582 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62094316;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62094317-62094415-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62094317-62094415&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0444202691172 0.0346977724292 0.644256641644 62321452 62321550 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62321451;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62094317-62094415-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62321452-62321550&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IQLQGGHPP*LRAILAAATLCKNIKEFVLGSPLTVYAPNSVK Same 540231 chr2:62094317-62094415- 36697 36697 1187 5 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.545454545455 0.142857142857 -2.14968484848 0.0431 -3.13164242424 0.981957575758 0.017262839632 0.445286376575 33707 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 -2.14968484848 0.0135 -3.13164242424 0.981957575758 -0.0460193806004 0.495585932506 69362 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 37917 547969 chr22:18997857-18997940+ NoOverlap chr22 18997857 18997940 + 2.71928936456 28 0.108903639277 1.06636070992 1.65292865464 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;18997856;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A18997857-18997940%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A18997857-18997940&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0348934844609 0.034524013413 0.522911165705 18985370 18985453 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;18985369;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A18997857-18997940%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A18985370-18985453&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QSELGDGVSGLQATEPYWQVLTPWAGTGVRGTECPGNR Same 549389 chr22:18997857-18997940+ 37593 37593 324 0 6645 18985824 18997940 9432 9432;26026;32176;36938;37917 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:18985824-18997940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.110671936759 -0.218567857143 0.0497 -2.37979642857 2.16122857143 0.0283857898679 0.547493262845 29320 27214 27214;29320;33193;33239;34296 -0.218567857143 0.0155 -2.37979642857 2.16122857143 -0.0320813465503 0.527654023616 58981 175 175;616;1654;2214;58981 0.0 0.0 ENST00000440005.6 NCintron pseudogene DiGeorge syndrome critical region gene 5 (non-protein coding) unprocessed pseudogene (ENSG00000237517) 37931 511823 chr16:54933435-54933485+ NoOverlap chr16 54933435 54933485 + 4.69381765758 17 0.626163837016 1.4155646247 3.27825303288 ENST00000320990.9,ENST00000394636.8,ENST00000558597.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54933434;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54933435-54933485%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54933435-54933485&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0631237370276 0.0344450789571 0.629611633967 54967347 54967397 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54967346;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54933435-54933485%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54967347-54967397&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QAQTVVFGRDRHIVGQGQGRGRRER Same 513464 chr16:54933435-54933485+ 39378 39378 -1447 0 496 54928752 54938880 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.647058823529 1.41666666667 -6.55948823529 0.935 -14.6892352941 8.12974705882 0.00082258220202 0.884613179423 41096 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -21.5954235294 0.8609 -42.8314647059 21.2360411765 0.0241707342592 0.831841553929 25610 Best 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.290152580478 chr5:2748345-2749052- ENST00000320990.9,ENST00000560154.5 CDS,CDSintron not annotated putative regulatory region 37985 564508 chr5:77851017-77851100+ NoOverlap chr5 77851017 77851100 + 2.76650353202 28 0.895323654754 0.220517843962 2.54598568806 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;77851016;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77851017-77851100%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A77851017-77851100&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.067848279753 0.0342241186589 0.642514680984 77146841 77146924 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;77146840;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77851017-77851100%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A77146841-77146924&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQHHFHGLNKSQGEGDIYNPPTRPQAVGK Same 565496 chr5:77851017-77851100+ 37310 37310 675 0 1311 77844392 77852299 1970 1970;21990;36224;37985;59349;64374;70990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:77844392-77852299&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.572727272727 -0.508164285714 0.9992 -1.3041 0.795935714286 0.018697878188 0.421052593208 33111 7731 7731;27249;28623;33111;43677;53467;56140 -7.16885 0.8622 -7.39406428571 0.225214285714 -0.0282610596822 0.426957998693 55548 5174 5174;34772;36018;49756;55548;66524;72923 0.0 0.0 ENST00000522370.1 AntiUTR5intron not annotated putative regulatory region 37997 528172 chr19:35790358-35790402+ NoOverlap chr19 35790358 35790402 + 4.8813466231 15 0.749154904504 1.02070002556 3.86064659754 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35790357;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35790358-35790402%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35790358-35790402&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0745400789446 0.0341793202179 0.680337430977 36281260 36281304 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36281259;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35790358-35790402%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36281260-36281304&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLCRLPQRSAGARPSPAR Same 529621 chr19:35790358-35790402+ 37804 37804 193 0 630 35767600 35790402 970 970;24953;37997;48990;61514;64238;71528 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35767600-35790402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.688888888889 0.1875 0.835386666667 0.9124 -3.55474 4.39012666667 0.0293242307987 0.649036593985 28957 432 432;4773;28957;32900;57014;70882;72541 -12.0833 0.5769 -13.2216666667 1.13836666667 -0.0390016521018 0.366389854396 64507 633 633;9309;48569;62013;62367;64507;71253 0.0 0.126689635898 chr16:88071393-88071929+ ENST00000433059.1 AntiNCintron coding exon(s) PROSER3 retained intron CDS 38120 477234 chr10:38175990-38176196+ NoOverlap chr10 38175990 38176196 + 2.31947538709 69 0.318401606399 1.16512464859 1.15435073849 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;38175989;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38175990-38176196%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A38175990-38176196&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0383730302113 0.0337236657575 0.589282234353 38464918 38465124 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;38464917;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38175990-38176196%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A38464918-38465124&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPMGNILTCCVCPRASPDLDQNQGSVCPCESETYEAAAGDMIAGVPVAAAVKPGEVTCEADEGLHVHRRGSDYFK Same 479127 chr10:38175990-38176196+ 36089 36089 2031 0 20199 38175849 38176196 Best 38120 38120;49032 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:38175849-38176196&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.570048309179 0.0616071428571 3.94874782609 0.71 -0.69142173913 4.64016956522 0.4787609159 0.895755231127 3279 Best 3279 3279;38963 3.12292028986 0.26 -1.5505115942 4.67343188406 0.172088005662 0.715032787104 7069 Best 7069 7069;61516 0.910834183685 chr2:207711897-207712116+ 0.920050399294 chr2:207711897-207712116+ ENST00000419779.1 NCintron pseudogene cyclin Y-like pseudogene (ENSG00000224761) 38141 469589 chr1:244272740-244272808+ NoOverlap chr1 244272740 244272808 + 2.43174782735 23 0.927308673427 -2.62135644225 5.0531042696 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244272739;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244272740-244272808%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244272740-244272808&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.140572094017 0.0336476425329 0.895485392353 244436042 244436110 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244436041;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244272740-244272808%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244436042-244436110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPLTSPFGFQSMFLCLLANRTVTSNNNNTVFPPLK Same 471470 chr1:244272740-244272808+ 41915 41915 -3774 0 1112 244272482 244272921 1692 1692;4751;38141;71945 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244272482-244272921&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.405797101449 0.0 -0.669226086957 0.9982 -7.37917391304 6.70994782609 0.164539887375 0.886447089203 10628 Best 10628 10628;10917;36623;72255 -4.7103826087 0.4649 -11.4594217391 6.74903913043 0.062686548273 0.684152252365 16363 11898 11898;16363;44560;66715 0.0 0.0 not annotated putative regulatory region 38172 490582 chr12:7620831-7620890+ NoOverlap chr12 7620831 7620890 + 4.77771003842 20 0.236896314946 1.35977495909 3.41793507934 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;7620830;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7620831-7620890%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A7620831-7620890&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00557620824609 0.0335535907305 0.676817729511 7773427 7773486 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;7773426;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7620831-7620890%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A7773427-7773486&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FFMVLPILINGFSNLLIPLIIGAPDK Same 492558 chr12:7620831-7620890+ 38948 38948 -776 0 1000 7620539 7637633 1528 1528;3369;23912;30341;31797;32931;38172;38567;44054;46877;50926 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:7620539-7637633&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.3 0.0 -0.53448 0.0793 -0.987965 0.453485 0.0256161733355 0.345342058616 30397 27370 27370;27482;29856;29976;30397;31757;32126;32399;32690;35677;37405 42.1981 0.6973 27.4702 14.7279 0.964832405773 0.829772347922 1634 310 310;676;714;1056;1511;1634;1765;1772;2213;2416;4434 0.0 0.783737234736 chrM:5904-7445+ pseudogene mitochondrial protein pseudogene region (ENSG00000284591) 38180 525234 chr18:5407461-5407505- NoOverlap chr18 5407461 5407505 - 4.24176659981 15 1.0 -1.44603987535 5.68780647516 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;5407460;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A5407461-5407505-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A5407461-5407505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0566772856036 0.0335314438178 0.884998546357 5407460 5407504 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;5407459;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A5407461-5407505-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A5407460-5407504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAFVPLTTVSFTFPFLLHFFQNSLIKRIKGENVYVK Same 526677 chr18:5407461-5407505- 54046 54046 -15866 0 226 5398651 5407505 284 284;504;528;38180 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:5398651-5407505&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 1.02272727273 1.51030666667 1.0 -1.65250666667 3.16281333333 0.0631216045907 0.5432129666 20747 201 201;410;974;20747 4.17698 0.9309 -7.73049333333 11.9074733333 0.250166610715 0.83544035997 5206 692 692;1608;1932;5206 0.0 0.104318495815 chr6:130880144-130880206- ENST00000341928.6,ENST00000542652.6 CDSintron,NCintron coding exon(s) EPB41L3 cassette exon 38203 589001 chr9:40503128-40503286+ NoOverlap chr9 40503128 40503286 + 2.49702073381 53 0.139299610895 1.19336414731 1.3036565865 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;40503127;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A40503128-40503286%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A40503128-40503286&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0423026769542 0.0334548022725 0.591716299858 42853831 42853673 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;42853830;-157;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A40503128-40503286%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A42853831-42853673&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQETHVYISEHIFFPFLQGFGNLPICMAKTDLSLSHQPDKKGVPRDFILPISDVRASIGAGFIYPLVGTVSESHFPK Same 589945 chr9:40503128-40503286+ 36108 36108 2095 0 20235 40500639 40503286 Best 38203 38203;46429 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:40500639-40503286&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.496855345912 0.407692307692 14.3568188679 0.5579 6.57790754717 7.77891132075 0.987759307641 1.01526054808 849 Best 849 849;5404 47.7497886792 0.8607 17.0795188679 30.6702698113 0.952476482434 1.01233786826 1800 580 580;1800 0.964899924884 chr6:151036965-151037117+ 0.838245751088 chr6:151036965-151037117+ ENST00000612975.4 NC pseudogene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like (MTHFD1L) pseudogene (ENSG00000184906) 38301 561539 chr4:41867232-41867291- NoOverlap chr4 41867232 41867291 - 4.40060989559 20 0.669606317235 2.83871490955 1.56189498603 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41867231;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41867232-41867291-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41867232-41867291&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.122835102936 0.0331133432927 0.434583702996 41869249 41869308 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41869248;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41867232-41867291-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41869249-41869308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APAGARGATQAGGGRAARSSRAPGPLK Same 562530 chr4:41867232-41867291- 39514 39514 -1213 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 0.974025974026 -2.49719 0.839 -3.381985 0.884795 -0.041553205234 0.377680910155 67424 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -10.64276 0.5402 -10.332775 -0.309985 -0.0463237472836 0.350039793485 69557 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 not annotated putative regulatory region 38303 546498 chr21:16535305-16535376+ NoOverlap chr21 16535305 16535376 + 3.36533332368 24 0.924038045828 1.18222079178 2.1831125319 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;16535304;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16535305-16535376%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A16535305-16535376&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.115573274786 0.0331063133129 0.560489783159 17907625 17907696 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;17907624;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A16535305-16535376%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A17907625-17907696&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQHSLEGFLVSPTFYHSAASDGKDWCSFCAVLCAWNTEKEEKEDKHPGPFLR Same 547914 chr21:16535305-16535376+ 38154 38154 149 0 5108 16534450 16539161 7083 7083;22298;38303 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:16534450-16539161&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 0.545454545455 -1.93456666667 0.9953 -3.55175 1.61718333333 -0.0233375212687 0.464308456022 56400 8805 8805;11748;56400 -9.43106666667 0.6356 -11.7119208333 2.28085416667 -0.0349441345785 0.479750426855 61409 15150 15150;17720;61409 0.0 0.0 ENST00000400178.6 NCintron not annotated ancient miRNA 38360 549325 chr22:50674292-50674579+ NoOverlap chr22 50674292 50674579 + 2.35224791709 96 0.188196987615 1.61370207462 0.738545842469 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50674291;288;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674292-50674579%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50674292-50674579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0493846846968 0.0329111072935 0.522835362494 51112720 51113007 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51112719;288;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674292-50674579%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51112720-51113007&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALPAPASGAAPSPPPLPSRLRPPPPAAPAPGEGRRRAEPGPMQLSRAAAAAAAAPAEPPEPLSPAPAPAPAPPGPLPRSAADGAPAGGKGGPGRRAR Same 550697 chr22:50674292-50674579+ 37054 37054 1306 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.881944444444 0.857309260338 0.239682291667 0.2431 -1.08624791667 1.32593020833 0.0305510746144 0.526335711783 28467 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -4.40890520833 0.3587 -4.917734375 0.508829166667 0.0301922671576 0.523000574547 23692 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.162094612396 chr19:50716665-50716919- ENST00000414786.6 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 38371 590780 chr9:131554556-131554615+ NoOverlap chr9 131554556 131554615 + 3.33993502706 20 0.4337628748 -1.7159199059 5.05585493296 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;131554555;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A131554556-131554615%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A131554556-131554615&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00999016476012 0.0328758449383 0.871264049888 134429943 134430002 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;134429942;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A131554556-131554615%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A134429943-134430002&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CHFFLGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPR Same 591733 chr9:131554556-131554615+ 35549 35549 2822 0 82 131546695 131558199 95 95;333;354;38371;66990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:131546695-131558199&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.816666666667 0.808080808081 -0.249235 0.7409 -13.03872 12.789485 0.26397351856 1.08257944356 6528 193 193;548;718;6528;43932 0.07231 0.4587 -14.653955 14.726265 0.311446140113 0.963354556994 4514 819 819;1673;1875;4514;55696 0.0 0.278395168414 chr7:47368365-47369621- protein-coding gene protein-coding gene ENSG00000283526 38432 558393 chr4:6673946-6673984+ NoOverlap chr4 6673946 6673984 + 3.57076921601 13 0.118722232982 1.41010758968 2.16066162632 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;6673945;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6673946-6673984%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A6673946-6673984&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0290302654878 0.0326451995153 0.45528897516 6675673 6675711 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;6675672;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A6673946-6673984%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A6675673-6675711&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASARARAGPLRREPR Same 559369 chr4:6673946-6673984+ 40458 40458 -2026 0 11567 6673946 6674539 17969 17969;38432 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:6673946-6674539&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.820512820513 1.2380952381 -4.29518461538 0.3598 -5.9451 1.64991538462 0.0127200995339 0.403280689743 35645 1851 1851;35645 -6.66185384615 0.1747 -5.55704615385 -1.10480769231 -0.00792507018583 0.295303489773 39694 3288 3288;39694 0.0 0.0 ENST00000307533.10 NC protein-coding gene protein-coding gene ENSG00000170846; found after examing lncRNAs for coding potential 38433 588634 chr9:23821259-23821336+ NoOverlap chr9 23821259 23821336 + 3.68710755542 26 0.416619422387 1.22015387278 2.46695368264 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23821258;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821259-23821336%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23821259-23821336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0206749762533 0.0326439631526 0.612789299501 23821257 23821334 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23821256;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821259-23821336%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23821257-23821334&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APSPTFPPIHSPASQQFPSCATRGRTRARPRPCTLPGATVPARLPPPPTCLCPR Same 589580 chr9:23821259-23821336+ 37970 37970 463 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.820512820513 1.15800636267 0.643103846154 0.7997 -1.55552307692 2.19862692308 0.0255416010519 0.543618764732 30423 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -3.21380769231 0.3569 -7.42381153846 4.21000384615 0.0275563051941 0.599563658393 24489 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000223951.10,ENST00000380117.5,ENST00000462649.1 AntiUTR5,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 38442 530327 chr19:15449238-15449318- NoOverlap chr19 15449238 15449318 - 3.30850002722 27 0.557053200297 0.989003768674 2.31949625854 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15449237;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15449238-15449318-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15449238-15449318&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0406088775867 0.0326141663796 0.602712213732 15560049 15560129 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15560048;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15449238-15449318-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15560049-15560129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPAHGGAPWESPGPRGQRLQPGLAPRPRPGCLGPASPPSPWGGR Same 531790 chr19:15449238-15449318- 40314 40314 -1872 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.814814814815 0.461538461538 -3.84115555556 0.8936 -4.31597407407 0.474818518519 -0.0718167767211 0.367196945266 73143 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -8.48052962963 0.3827 -8.80842222222 0.327892592593 -0.0479477966932 0.420752339899 70470 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.166707639163 chr16:85661146-85661765+ ENST00000263381.11 UTR5intron coding exon(s) WIZ 2 cassette exons 38456 514461 chr16:56191731-56191805- NoOverlap chr16 56191731 56191805 - 5.15206797659 25 0.416663462272 4.60479605854 0.547271918058 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;56191730;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191731-56191805-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A56191731-56191805&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0766989804671 0.0325805103221 0.340605527937 56225643 56225717 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;56225642;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191731-56191805-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A56225643-56225717&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGPAAAAAGGGGGGGGGGGGGGGGGGGAGCGGSELGGAASACASPLFSR Same 516113 chr16:56191731-56191805- 38913 38913 -457 0 1286 56191313 56194112 1942 1942;3444;31465;36646;38456;47043;50502;59548;64898;65693 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:56191313-56194112&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.786666666667 1.5306122449 6.228652 0.5382 6.275728 -0.047076 0.0366455354344 0.336623578371 26528 5744 5744;16309;26528;60646;61684;66065;68363;69167;72514;73281 2.109496 0.3469 0.480432 1.629064 0.0555100444008 0.490361886379 17639 7040 7040;17639;26908;52826;54474;57942;62845;66974;67638;71986 0.0 0.0 ENST00000262493.10 AntiUTR5 not annotated putative regulatory region 38490 482193 chr10:113118964-113119083- NoOverlap chr10 113118964 113119083 - 1.85157496035 40 0.924498359655 -0.953610065207 2.80518502556 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113118963;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113118964-113119083-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113118964-113119083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0308665310368 0.0324597529842 0.745538437794 114878723 114878842 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114878722;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113118964-113119083-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114878723-114878842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPHWFTHDIFFNFLADIKNIN*QPENRKERMTAPDNVDYLKPR Same 484117 chr10:113118964-113119083- 37005 37005 1485 20 719 113118964 113126911 1110 1110;6516;16816;37245;38490;54651;58469;62875;67669;70173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118964-113126911&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.408333333333 1.02040816327 -0.19498 0.9984 -1.2366875 1.0417075 0.0777684049984 0.496420558041 18572 4406 4406;18572;33940;40718;63931;65767;72176;72358;72407;73429 -1.2459975 0.9304 -3.1198825 1.873885 0.116080640844 0.5595038311 10141 6655 6655;10141;25415;26332;35901;38764;51629;51984;53928;72240 0.0 0.0 ENST00000346198.5 AntiCDSintron not annotated putative regulatory region 38498 504797 chr14:76134426-76134452- NoOverlap chr14 76134426 76134452 - 8.15866658423 9 0.85020218204 5.61504436864 2.54362221559 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;76134425;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76134426-76134452-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A76134426-76134452&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.116849169095 0.032433417061 0.383658816311 76600769 76600795 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;76600768;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76134426-76134452-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A76600769-76600795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YRPLIHGSGLSNSLRQLKRIMK Same 506643 chr14:76134426-76134452- 36098 36098 2400 0 1204 76131383 76139120 1818 1818;4345;22997;27107;30537;31486;38498;41376;68067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:76131383-76139120&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 1.5 0.9633 1.0 0.322677777778 0.640622222222 -0.0336238782324 0.276997386222 62795 4515 4515;9493;16210;27689;28296;48242;62795;67676;71399 1.27827777778 0.8833 1.25623333333 0.0220444444444 -0.0138931902179 0.312155472961 43506 13549 13549;42486;43506;45749;54311;55020;58474;69721;73189 0.0 0.0210796786315 chrX:38287094-38288041- not annotated putative regulatory region 38545 527731 chr19:28611202-28611285+ NoOverlap chr19 28611202 28611285 + 2.60609998235 28 0.129797055009 -1.14655714282 3.75265712517 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28611201;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28611202-28611285%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28611202-28611285&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0263434835192 0.0323030118408 0.793262454695 29102109 29102192 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29102108;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28611202-28611285%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29102109-29102192&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TVNIYTDSQYAFLTLQVHGALYKEKGLLNSGGK Same 529178 chr19:28611202-28611285+ 37452 37452 1093 0 19357 28608133 28611285 36033 36033;38545;39010;41587;43070;45508;47044;48128 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28608133-28611285&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.392857142857 0.0 -0.742557142857 0.0304 -1.91628571429 1.17372857143 0.0281532250278 0.453593165646 29422 26060 26060;29422;36006;38223;39249;43455;47313;48514 -0.742557142857 0.0095 -1.91628571429 1.17372857143 -0.0349691826142 0.484486670304 61427 27094 27094;34090;60003;61081;61427;61444;64226;70401 0.0 0.0 ENST00000587961.1,ENST00000585394.1 NC,AntiNCintron not annotated potentially spurious 38563 555622 chr3:49108464-49108658- NoOverlap chr3 49108464 49108658 - 1.42642615071 65 0.839399733554 -0.757378425965 2.18380457667 ENST00000398896.5,ENST00000398898.6,ENST00000417901.5,ENST00000453664.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;49108463;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A49108464-49108658-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A49108464-49108658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0124949639074 0.0322387145247 0.716655615658 49145897 49146091 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;49145896;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A49108464-49108658-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A49145897-49146091&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLIKPDYSGPISSLCLNAAAVCACLGTLPWVPGLQASTPGMPGGMLGSPQPLSSYSVAGTRPWPGPRGGPHADSP*TLRPPCGSASPHLQQHGGGGLAGPWLMGGTGFGTPTQR Same 556576 chr3:49108464-49108658- 33392 33392 5171 4 525 49108464 49120972 782 782;6927;11608;22914;38563 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:49108464-49120972&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.712820512821 0.45892169448 -2.03286153846 0.9975 -3.63674615385 1.60388461538 0.0714242023513 0.531074230549 19488 1900 1900;11326;19488;30342;47390 -16.8670646154 0.6069 -20.7879753846 3.92091076923 -0.0426156634488 0.608792132835 67129 2475 2475;12326;33524;38234;67129 0.0 0.0276257124215 chrX:153688575-153688836+ ENST00000398896.5 CDS under investigation USP19 potential non-ATG start 38567 490583 chr12:7620925-7620951+ NoOverlap chr12 7620925 7620951 + 8.18434450361 9 0.234185295389 0.222166577975 7.96217792564 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;7620924;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7620925-7620951%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A7620925-7620951&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00677078610549 0.0322307644692 0.9586210579 7773521 7773547 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;7773520;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7620925-7620951%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A7773521-7773547&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLPLSFLLLQ Same 492559 chr12:7620925-7620951+ 41358 41358 -2791 0 1000 7620539 7637633 1528 1528;3369;23912;30341;31797;32931;38172;38567;44054;46877;50926 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:7620539-7637633&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.0 1.32983333333 0.0793 -2.00645555556 3.33628888889 0.0334301998793 0.49851518716 27482 27370 27370;27482;29856;29976;30397;31757;32126;32399;32690;35677;37405 55.5563222222 0.6987 2.3931 53.1632222222 0.874792142428 0.993431561254 2213 310 310;676;714;1056;1511;1634;1765;1772;2213;2416;4434 0.0 0.782067901433 chrM:5904-7445+ pseudogene mitochondrial protein pseudogene region (ENSG00000284591) 38600 547195 chr21:8397010-8397522- NoOverlap chr21 8397010 8397522 - 1.78679823614 171 0.183039463311 1.55788773917 0.22891049697 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397009;513;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397010-8397522-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397010-8397522&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.031029823616 0.0320727699647 0.654056425026 157404 157916 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157403;513;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397010-8397522-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157404-157916&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPPPGRRRRGGGGREGGWRGREERGAGKIRRAADTAGPAAGLNPPGGLRGPHPFTS*RFHALLNSLFKVLFNFPLRYLLTIGLVPVFSLRWSLPPALGCIPKQPDSGKTRARRAGGRYRPHTVHGLGLDQKDLGPPRAAPGSGSSVRHMSRAPPRGGDSALGSSLFTRRY Same 548599 chr21:8397010-8397522- 58441 58441 -19841 58 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.682261208577 0.971590909091 -2.3370871345 0.2564 -3.67293567251 1.33584853801 0.0303925928203 0.78739533505 28535 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -7.05382046784 0.3719 -7.88632222222 0.832501754386 0.0277308367853 0.516416041726 24436 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0426711400294 chr12:56599964-56600096- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 38601 547293 chr21:8441230-8441742- NoOverlap chr21 8441230 8441742 - 1.78679823614 171 0.183039463311 1.55788773917 0.22891049697 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441229;513;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441230-8441742-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441230-8441742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.031029823616 0.0320727699647 0.654056425026 157404 157916 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157403;513;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441230-8441742-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157404-157916&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPPPGRRRRGGGGREGGWRGREERGAGKIRRAADTAGPAAGLNPPGGLRGPHPFTS*RFHALLNSLFKVLFNFPLRYLLTIGLVPVFSLRWSLPPALGCIPKQPDSGKTRARRAGGRYRPHTVHGLGLDQKDLGPPRAAPGSGSSVRHMSRAPPRGGDSALGSSLFTRRY Same 548696 chr21:8441230-8441742- 58442 58442 -19841 58 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.682261208577 0.971590909091 -1.4841754386 0.2871 -2.25697660819 0.772801169591 0.0312652643336 0.757330137479 28211 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -6.93633918129 0.3662 -8.94879824561 2.01245906433 0.0628044867634 0.554288395856 16344 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0896760203595 chr19:19226486-19227073+ not annotated SSU-rRNA_Hsa 38665 592969 chr9:114657748-114657774- NoOverlap chr9 114657748 114657774 - 6.85433324178 9 0.699305714504 -1.08091085818 7.93524409996 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;114657747;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114657748-114657774-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A114657748-114657774&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.016361298283 0.031809915445 0.975631477663 117420028 117420054 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;117420027;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A114657748-114657774-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A117420028-117420054&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QWVSGIGAAEPGAPVPFPPPTAHQNMGSKIFCCCR Same 593922 chr9:114657748-114657774- 41507 41507 -2842 0 1334 114657748 114666675 2004 2004;38665 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:114657748-114666675&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.0 21.0648111111 0.9903 0.793622222222 20.2711888889 0.819341581679 0.978512352012 1601 Best 1601 1601;2856 21.0648111111 0.3095 0.793622222222 20.2711888889 0.284195574555 0.954460320402 4800 Best 4800 4800;7585 0.0 0.0 ENST00000423632.1,ENST00000415101.1 NC,NCintron protein-coding gene protein coding gene ENSG00000230054 38679 513864 chr16:30776030-30776062- NoOverlap chr16 30776030 30776062 - 5.79319992932 11 0.718565374505 -0.763163864613 6.55636379394 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;30776029;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A30776030-30776062-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A30776030-30776062&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00257890919866 0.031741597754 0.910955953961 30787351 30787383 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;30787350;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A30776030-30776062-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A30787351-30787383&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAASL*CNILRFSHPR Same 515517 chr16:30776030-30776062- 39916 39916 -1237 5 694 30775877 30787359 1077 1077;38679;43581;62235;70302 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:30775877-30787359&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.484848484848 1.57142857143 0.567090909091 0.8882 -5.65155454545 6.21864545455 -0.00354501768406 0.755321713595 43351 934 934;20105;43351;55875;59797 -2.99794545455 0.3754 -7.5074 4.50945454545 -0.0204127479798 0.507823198259 48419 3421 3421;17092;24351;48419;73017 0.0 0.0 ENST00000623557.1,ENST00000324685.10,ENST00000493683.5 NC,AntiUTR3,AntiNC not annotated putative regulatory region 38720 547157 chr21:8391812-8391850- NoOverlap chr21 8391812 8391850 - 5.91003073179 13 0.418592531296 0.894691656033 5.01533907575 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8391811;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8391812-8391850-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8391812-8391850&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00167323975268 0.0315805138553 0.782568691015 108205 108243 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;108204;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8391812-8391850-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A108205-108243&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGSPRRRRPGRTPRGK Different 548562 chr21:8391779-8391850- 22465 22465 16255 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.794871794872 1.31092436975 2.27569230769 0.17 0.560746153846 1.71494615385 0.0243735534538 0.396421185995 30848 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 3.19498461538 0.2393 -0.547884615385 3.74286923077 0.00592501182945 0.493353374317 32498 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.146660387383 chr12:48996740-48998666- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 38721 530316 chr19:15432546-15432722- NoOverlap chr19 15432546 15432722 - 2.95362204515 59 0.251428852224 2.09889829916 0.854723745989 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15432545;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432546-15432722-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15432546-15432722&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0502884246622 0.0315791635109 0.54488592732 15543357 15543533 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15543356;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432546-15432722-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15543357-15543533&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAAPAWGGRPACAGAKMAASTAQCRVTKAESKAAAGPRAGGARERAPAGAPPPSPPSPGPAAPPAPPPPPPPPPPPPPPPPPPPPPR Same 531779 chr19:15432546-15432722- 38942 38942 -221 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.858757062147 1.0140625 2.69194745763 0.3814 2.1367440678 0.555203389831 0.0657293637671 0.52007386143 20348 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -1.59663728814 0.295 -3.89835423729 2.30171694915 0.0420725233949 0.604961140122 20477 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.113716323972 chr19:58350370-58350651- ENST00000599686.3,ENST00000263381.11,ENST00000599910.6 UTR5,CDSintron,UTR5intron coding exon(s) WIZ 2 cassette exons 38755 584688 chr8:78645685-78645891+ NoOverlap chr8 78645685 78645891 + 1.19699855775 69 0.177132697098 -4.18298697914 5.37998553689 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78645684;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78645685-78645891%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78645685-78645891&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0121192056843 0.0314785672301 1.02475421772 79557920 79558126 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79557919;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78645685-78645891%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79557920-79558126&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WSEYSDLAMQQSLQNLDNNIPIQLDMLLGTGPFALAQAQVHSHLFPQCSQLVIQAWKRIPMGQSQGSSVIVRQSPTKTYIKFII*LLAAIERQVPHPEATKLLMLQLAFENANKDCQAATTPVR Same 585619 chr8:78645685-78645891+ 22636 22636 16119 30 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.434782608696 0.204849084612 -0.744879710145 0.0306 -0.919463768116 0.174584057971 -0.00427721207687 0.42125013268 43737 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 1.18488405797 0.1373 -9.56855072464 10.7534347826 0.155652954649 0.938778789973 7765 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 38826 588644 chr9:23822901-23822927+ NoOverlap chr9 23822901 23822927 + 7.83858897951 9 0.95929401592 3.60728901625 4.23129996326 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23822900;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23822901-23822927%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23822901-23822927&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0901745890365 0.0312374785516 0.605637986277 23822899 23822925 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23822898;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23822901-23822927%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23822899-23822925&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASSAPRPHATGGAGLGGR Same 589590 chr9:23822901-23822927+ 38517 38517 309 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.851851851852 1.03846153846 1.23415555556 0.9528 -0.8309 2.06505555556 -0.0393819488293 0.391022460505 66213 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -1.1808 0.3378 -2.15628888889 0.975488888889 -0.0288908999962 0.350484823603 56129 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000380117.5,ENST00000462649.1 AntiUTR5intron,AntiNCintron not annotated putative regulatory region 38839 577711 chr7:27169491-27169565+ NoOverlap chr7 27169491 27169565 + 3.67111598015 25 0.865506981003 3.41951597214 0.251600008011 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27169490;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27169491-27169565%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27169491-27169565&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.220516618706 0.0311889721322 0.310757576582 27209110 27209184 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27209109;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27169491-27169565%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27209110-27209184&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YLETISTEVMKAVSCCREKGGSQQQETT*ITDQFWCCPR None NA NA 5 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.493333333333 0.657894736842 0.35758 0.9913 -0.293036 0.650616 0.0350502981888 0.395539326701 26961 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -1.352832 0.7172 -5.799632 4.4468 0.103590550289 0.6083451216 11179 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000519935.1,ENST00000519694.1,ENST00000489695.1,ENST00000470747.4,ENST00000465941.1 NC,NCintron,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 38842 513606 chr16:25086330-25086377- NoOverlap chr16 25086330 25086377 - 5.64626886067 16 0.400026703288 3.05259989947 2.5936689612 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;25086329;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A25086330-25086377-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A25086330-25086377&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0164987060204 0.0311797629852 0.519333781567 25097651 25097698 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;25097650;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A25086330-25086377-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A25097651-25097698&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VEVNFQMIVMRKLHSIK Same 515256 chr16:25086330-25086377- 40902 40902 -2060 0 20469 25086330 25086377 Best 38842 38842 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:25086330-25086377&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.375 0.6 15.94045 0.8299 9.08895 6.8515 0.536302455534 0.780584682685 2896 Best 2896 2896 15.94045 0.2594 9.08895 6.8515 0.242078200201 0.614238297124 5338 Best 5338 5338 0.949848345806 chr16:25140171-25140251+ 0.949860407076 chr16:25140171-25140251+ ENST00000563962.5,ENST00000566507.1 NC,NCintron not annotated potentially spurious 38909 490525 chr12:6678691-6678792+ NoOverlap chr12 6678691 6678792 + 2.00642944785 34 0.840088143291 -1.08514406751 3.09157351536 ENST00000319770.7,ENST00000361959.7,ENST00000396801.7,ENST00000417772.7,ENST00000538829.5,ENST00000540915.5,ENST00000542351.5,ENST00000544482.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;6678690;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A6678691-6678792%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A6678691-6678792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0454942742508 0.0309277774809 0.751770126717 6787857 6787958 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;6787856;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A6678691-6678792%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A6787857-6787958&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTPFSSPPLRTGDSLIQRRKECHLLKGRDRIFYFFVSPTMPSTLLGTQ Same 492501 chr12:6678691-6678792+ 38529 38529 380 0 12 6667963 6700148 12 12;12158;18552;20045;33854;38909;39562;56088 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:6667963-6700148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.490196078431 0.17 0.589452941176 0.9995 -1.19292941176 1.78238235294 0.126608130187 0.550569530756 13385 2774 2774;6809;9420;13385;14558;25605;62765;71889 -4.65090882353 0.3938 -5.89190294118 1.24099411765 -0.0107544370244 0.503570001641 41399 3069 3069;6299;29969;40306;41399;41916;69914;73517 0.0 0.0 ENST00000319770.7,ENST00000355772.8 AntiCDS,AntiCDSintron not annotated potentially spurious 38968 494930 chr12:45610611-45610655- NoOverlap chr12 45610611 45610655 - 1.87404004907 15 0.139115485364 -0.948986736933 2.823026786 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;45610610;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A45610611-45610655-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A45610611-45610655&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0480500584606 0.0307092979809 0.581256842694 46004394 46004438 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;46004393;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A45610611-45610655-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A46004394-46004438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEMGFHQVGQADHELLTSGDPPALASQSAGITGVSHGSRPFNILLNGSPTSNLSFRPNLVSTSLELPLHIYIIYR Same 496927 chr12:45610611-45610655- 39110 39110 -142 0 20515 45610611 45610655 Best 38968 38968 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:45610611-45610655&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.622222222222 0.230769230769 -1.73436666667 0.0889 -2.61856 0.884193333333 0.0284349862609 0.348796821096 29299 Best 29299 29299 -1.73436666667 0.0278 -2.61856 0.884193333333 -0.00506970814205 0.392606442468 38046 Best 38046 38046 0.0 0.0 ENST00000549223.1 NC not annotated potentially spurious 38989 558295 chr4:3505153-3505218+ NoOverlap chr4 3505153 3505218 + 4.41907728036 22 0.409932236071 2.19724547389 2.22183180647 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;3505152;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A3505153-3505218%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A3505153-3505218&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0248882276831 0.0306208516444 0.541328459557 3506880 3506945 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;3506879;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A3505153-3505218%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A3506880-3506945&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQVVPELTDTRKKGDRVLDSPARGCSSAPAPGVPQR Same 559271 chr4:3505153-3505218+ 39259 39259 -270 0 218 3500310 3505629 272 272;1209;38989;46929;51176 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:3500310-3505629&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.6875 -1.03613181818 0.1379 -2.47500909091 1.43887727273 0.0165372693439 0.441388499688 33984 442 442;813;28076;33984;34533 -0.436427272727 0.1873 -3.18739090909 2.75096363636 -0.0123994459755 0.518836590071 42450 393 393;793;1580;2806;42450 0.0 0.0 coding exon(s) DOK7 3 3' coding exons 39010 527730 chr19:28611016-28611195+ NoOverlap chr19 28611016 28611195 + 1.93943998472 60 0.129903613845 -0.669373376171 2.60881336089 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28611015;180;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28611016-28611195%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28611016-28611195&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0415354907742 0.0305516641396 0.773099402167 29101923 29102102 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29101922;180;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28611016-28611195%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29101923-29102102&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DHPWMSLDWELYVDGSNFVNSQGERCVGYAVVTLDAVIEAKSLPQGTSAQKAELIALIRASELSEGK Same 529177 chr19:28611016-28611195+ 32794 32794 6216 0 19357 28608133 28611285 36033 36033;38545;39010;41587;43070;45508;47044;48128 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28608133-28611285&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.412087912088 -0.395423333333 0.0306 -0.560558333333 0.165135 0.00678067264068 0.434133132981 38223 26060 26060;29422;36006;38223;39249;43455;47313;48514 -0.395423333333 0.0096 -0.560558333333 0.165135 -0.0386469330425 0.515546839387 64226 27094 27094;34090;60003;61081;61427;61444;64226;70401 0.0 0.0 ENST00000587961.1,ENST00000585394.1 NC,AntiNCintron not annotated potentially spurious 39068 547170 chr21:8394829-8394894- NoOverlap chr21 8394829 8394894 - 1.30434093624 22 0.158356048468 -0.100459993631 1.40480092987 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8394828;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394829-8394894-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8394829-8394894&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0508820884012 0.0303649347879 0.45917950941 155216 155283 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155215;68;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394829-8394894-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155216-155283&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTGPGGEEGTETPRPAATPPRTAPAPADTHAVGAAAGDR None NA NA 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.818181818182 1.25914149444 3.46078636364 0.2199 0.196095454545 3.26469090909 0.036823643534 0.616623647947 26477 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 4.17133181818 0.2861 -0.139163636364 4.31049545455 0.094582076432 0.585804258003 12047 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0385324918609 chr3:9909217-9909283+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 39105 547200 chr21:8397528-8397659- NoOverlap chr21 8397528 8397659 - 4.14360004189 44 0.182653960063 4.18034320223 -0.0367431603372 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397527;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397528-8397659-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397528-8397659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0560572412623 0.0302641107523 0.382132016506 157922 158053 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157921;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397528-8397659-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157922-158053&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATFPAGLPSRPGAGRGAPPRWKCARRRPVAGRGTVPRRPHPRPRPPTPAPAGARPLR Different 548604 chr21:8397528-8397689- 32937 32937 6168 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.848484848485 1.05882352941 -4.00440681818 0.2485 -4.59909090909 0.594684090909 -0.0268600656268 0.404830367676 58603 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -8.10999772727 0.3538 -9.94652272727 1.836525 -0.0388553351845 0.543508439027 64391 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.133026068321 chr3:9892915-9893377+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 39106 508438 chr15:38072940-38072993- NoOverlap chr15 38072940 38072993 - 3.42324454255 18 0.758319133966 -1.51470556193 4.93795010448 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;38072939;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A38072940-38072993-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A38072940-38072993&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.036997290132 0.030263356231 0.843284921093 38365141 38365194 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;38365140;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A38072940-38072993-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A38365141-38365194&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGSVPGDEWGFVRRQPRLPSAGPAR Same 510158 chr15:38072940-38072993- 40092 40092 -986 0 6797 38072940 38073050 9650 9650;39106 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:38072940-38073050&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.648148148148 0.54 -4.98771666667 0.898 -6.08386111111 1.09614444444 -0.0446392079731 0.383607596174 69033 51687 51687;69033 -16.5463833333 0.553 -15.5344388889 -1.01194444444 -0.0221029867725 0.276639904761 49877 42150 42150;49877 0.0 0.0 ENST00000560198.1 NC not annotated potentially spurious 39145 546466 chr21:15051690-15051725+ NoOverlap chr21 15051690 15051725 + 6.36310801903 12 0.9314170545 4.09325830142 2.26984971762 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;15051689;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A15051690-15051725%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A15051690-15051725&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.13891738964 0.0301498323273 0.419949085544 16424011 16424046 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;16424010;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A15051690-15051725%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A16424011-16424046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLLHWPWTSNLYQTGTQINPSAHK Same 547883 chr21:15051690-15051725+ 38884 38884 261 0 20577 15051690 15051725 Best 39145 39145 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:15051690-15051725&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.45 1.80030833333 1.0 2.37584166667 -0.575533333333 -0.00636518962007 0.206084212037 44909 Best 44909 44909 -2.179275 0.6432 -2.58520833333 0.405933333333 -0.0275600309315 0.351560681763 54872 Best 54872 54872 0.0 0.0 ENST00000623352.1,ENST00000318948.6 NC,AntiUTR5intron not annotated potentially spurious 39158 484846 chr11:64241280-64241378+ NoOverlap chr11 64241280 64241378 + 2.65528477954 33 0.729083464538 0.701193966649 1.95409081289 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64241279;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64241280-64241378%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64241280-64241378&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0704864373579 0.030098741408 0.596797496153 64008752 64008850 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64008751;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64241280-64241378%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64008752-64008850&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCPEMPQGEGSHAARGGVLGLGAGRGTGTGGTSELVPVEGGAR Same 486793 chr11:64241280-64241378+ 43460 43460 -4302 0 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.737373737374 0.876811594203 2.78393030303 0.9481 -1.31714545455 4.10107575758 0.315793349101 0.7695127612 5278 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 -4.09017272727 0.6116 -7.66928787879 3.57911515152 0.0678483410816 0.602601038963 15512 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.00165939991555 chr16:89948797-89948814+ ENST00000309366.8,ENST00000536642.5 UTR5intron,NCintron under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 39211 525520 chr18:26547971-26548066- NoOverlap chr18 26547971 26548066 - 3.09754997585 32 0.603264476997 1.41071563959 1.68683433626 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26547970;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26547971-26548066-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26547971-26548066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0709439752564 0.0299331214992 0.55299202097 24127935 24128030 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;24127934;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26547971-26548066-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A24127935-24128030&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGPRRAAAPRAGPAEREHPAGHPLRRAHLPGVPER Same 526963 chr18:26547971-26548066- 42655 42655 -3444 0 513 26546760 26549891 768 768;8399;25501;30998;36827;39211;40894;58515;70807;71876 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26546760-26549891&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.729166666667 1.10073710074 -3.9881125 0.9516 -4.784925 0.7968125 -0.0865095242427 0.406856900028 73517 2222 2222;11084;12141;14614;15029;28171;62885;67707;71661;73517 -18.1893 0.8049 -19.46821875 1.27891875 -0.0603499042324 0.406508541243 73449 2942 2942;16429;16512;26392;33196;52681;55735;64991;73449;73633 0.0 0.0473901066857 chr3:143972333-143972989+ ENST00000580191.5,ENST00000317932.11 CDSintron,UTR5intron coding exon(s) KCTD1 5' extension 39223 554598 chr3:195708133-195708165+ NoOverlap chr3 195708133 195708165 + 6.34036343748 11 0.780953966305 1.54946361889 4.79089981859 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;195708132;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195708133-195708165%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A195708133-195708165&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0679975623939 0.0299098367898 0.727932157522 195435004 195435036 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;195435003;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195708133-195708165%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A195435004-195435036&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPVSASWVAGTTGVHHHTWLILIFFFFFNVPFSPGSCSQPQNLCCLGTDHR Same 555549 chr3:195708133-195708165+ 37511 37511 1712 0 4182 195708133 195711628 5786 5786;39223 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:195708133-195711628&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606060606061 0.0 7.56055454545 0.8177 0.794454545455 6.7661 0.141445384898 0.780000230172 12164 Best 12164 12164;26454 9.04756363636 0.3274 0.236736363636 8.81082727273 0.117670002034 0.669639672837 10014 Best 10014 10014;14584 0.0 0.0 ENST00000420459.5,ENST00000618708.3 NC,NCintron pseudogene unitary pseudogene ENSG00000283426 39323 547297 chr21:8441748-8441909- NoOverlap chr21 8441748 8441909 - 3.42182780747 54 0.182865248708 3.62584260741 -0.204014799937 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441747;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441748-8441909-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441748-8441909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0594310175845 0.0295672844051 0.390104325508 157922 158083 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157921;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441748-8441909-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157922-158083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGPPEPPSPPGLPSRPGAGRGAPPRWKCARRRPVAGRGTVPRRPHPRPRPPTPAPAGARPLR Same 548700 chr21:8441748-8441909- 40803 40803 -1480 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.851851851852 0.970921198668 -2.46579444444 0.2428 -2.00115555556 -0.464638888889 -0.0315914446779 0.337046604955 61533 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -5.0399537037 0.351 -4.24536851852 -0.794585185185 -0.0223732941588 0.457662228853 50120 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0998589026656 chr12:56599964-56600096- not annotated SSU-rRNA_Hsa 39411 538856 chr2:62097506-62097562- NoOverlap chr2 62097506 62097562 - 3.42972633086 19 0.129916115535 0.893284209465 2.53644212139 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62097505;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62097506-62097562-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62097506-62097562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0226558789775 0.0292055146052 0.563833375378 62324641 62324697 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62324640;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62097506-62097562-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62324641-62324697&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HHLFLIVDSTPIHLLQQDFLETHNAHISFSQKGEMILNLGDADLQKPTCTLCL Same 540234 chr2:62097506-62097562- 40186 40186 -775 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.438596491228 0.0 0.318068421053 0.0306 -0.451894736842 0.769963157895 0.03542680537 0.366497697583 26861 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 0.318068421053 0.0096 -0.451894736842 0.769963157895 -0.0130753715957 0.41660751834 42912 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 39446 483251 chr11:1100921-1100950+ NoOverlap chr11 1100921 1100950 + 6.93483008146 10 0.561660181582 0.21324006319 6.72159001827 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1100920;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1100921-1100950%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1100921-1100950&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00765744768341 0.0290693900772 0.900821692687 1094829 1094858 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1094828;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1100921-1100950%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1094829-1094858&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTGLRPYPSSVLICCVLNDTYYAPGTQAVHILCLGGR Same 485181 chr11:1100921-1100950+ 41630 41630 -2184 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 1.0 16.90344 0.8285 -10.00111 26.90455 0.387103326671 0.963148664262 4172 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 17.28422 0.5395 -19.54412 36.82834 0.672781583999 0.992230248954 2917 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.00956190876959 chr11:1240851-1251743+ 0.131032738647 chr16:90042470-90042535+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 39514 466652 chr1:111989410-111989454+ NoOverlap chr1 111989410 111989454 + 5.10745328267 15 0.683802548257 1.70810004075 3.39935324192 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;111989409;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111989410-111989454%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A111989410-111989454&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0738054001941 0.0288688845709 0.619542832053 112532032 112532076 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;112532031;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111989410-111989454%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A112532032-112532076&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EWEGAAWAAGATGVGAALLALPGSR Same 468512 chr1:111989410-111989454+ 40457 40457 -943 0 3139 111987704 111990382 4367 4367;39514;56303;64208;68005;68136;69319 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:111987704-111990382&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.782608695652 5.10254 0.8146 3.53142 1.57112 0.0619810802168 0.394951480695 20935 9251 9251;20935;24066;40454;53078;72081;72576 1.98788666667 0.5251 -3.76672666667 5.75461333333 0.0978619973444 0.595828126223 11706 Best 11706 11706;24170;34786;49854;53572;64032;73297 0.0 0.0742173849094 chr3:47409928-47411686+ not annotated putative regulatory region 39562 490522 chr12:6672822-6672869+ NoOverlap chr12 6672822 6672869 + 3.84486242011 16 0.839785038529 -1.37429384515 5.21915626526 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;6672821;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A6672822-6672869%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A6672822-6672869&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0306591506579 0.0286985670493 0.851916960991 6781988 6782035 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;6781987;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A6672822-6672869%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A6781988-6782035&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VNTLTTDTLLPNSNLNK Same 492498 chr12:6672822-6672869+ 38445 38445 1117 0 12 6667963 6700148 12 12;12158;18552;20045;33854;38909;39562;56088 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:6667963-6700148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4375 0.0 3.63278125 0.9439 0.68209375 2.9506875 0.113341467554 0.531991873122 14558 2774 2774;6809;9420;13385;14558;25605;62765;71889 -0.39971875 0.4484 -2.6697375 2.27001875 0.0118811475183 0.457428349655 29969 3069 3069;6299;29969;40306;41399;41916;69914;73517 0.0 0.0 ENST00000319770.7,ENST00000537383.1 AntiCDSintron,AntiNCintron not annotated potentially spurious 39578 522308 chr17:50751194-50751235- NoOverlap chr17 50751194 50751235 - 4.44570712107 14 0.910795757992 -1.10509284479 5.55079996586 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;50751193;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A50751194-50751235-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A50751194-50751235&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0250803582699 0.0286013809279 0.862038938085 48828555 48828596 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;48828554;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A50751194-50751235-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A48828555-48828596&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FINPTLPSIQCYWLSSYRTNCIRMQGNK Same 523736 chr17:50751194-50751235- 39979 39979 -401 0 11440 50750924 50761416 17729 17729;20331;30313;39578;68410 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:50750924-50761416&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.428571428571 0.518518518519 -0.268328571429 0.989 -1.78773571429 1.51940714286 -0.0192401059167 0.392757509766 53652 2260 2260;17611;40644;48115;53652 -8.83999285714 0.8996 -8.5159 -0.324092857143 -0.0468409718648 0.323410285005 69870 607 607;33223;37013;53407;69870 0.0 0.0 ENST00000393227.6,ENST00000503798.1,ENST00000503728.1,ENST00000240304.5 AntiUTR3,AntiNC,AntiCDSintron,AntiUTR3intron protein-coding gene protein-coding gene ENSG00000167117; found after examing lncRNAs for coding potential 39659 476485 chr1:244730662-244730709- NoOverlap chr1 244730662 244730709 - 4.2993375659 16 0.490587090867 -1.04989995668 5.34923752258 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244730661;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244730662-244730709-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244730662-244730709&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0033572700545 0.0283777755069 0.861506411015 244893964 244894011 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244893963;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244730662-244730709-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244893964-244894011&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTRAQARRPRSAACGAPR Same 478379 chr1:244730662-244730709- 38603 38603 1056 0 1209 244730511 244730827 1827 1827;6442;39659;57601 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244730511-244730827&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.8125 0.888888888889 -3.6638375 0.5788 -7.44320625 3.77936875 -0.0314518418197 0.593742519447 61439 1411 1411;4590;49722;61439 -5.0833 0.4177 -8.03364375 2.95034375 -0.0205413260486 0.477775576773 48536 2751 2751;4783;48536;48762 0.0 0.136033029459 chr4:154489304-154491355- protein-coding gene protein coding gene ENSG00000284188 39672 470909 chr1:26171483-26171515- NoOverlap chr1 26171483 26171515 - 5.76462721825 11 0.832412936876 -0.131409092383 5.89603631063 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;26171482;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26171483-26171515-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A26171483-26171515&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0168369395949 0.0283145208967 0.853165160713 26497974 26498006 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;26497973;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A26171483-26171515-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A26497974-26498006&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPQQPGCHVPCRLSRQAQMGSEAK Same 472786 chr1:26171483-26171515- 37086 37086 2586 0 99 26164164 26171664 118 118;480;770;917;2190;2831;39672 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:26164164-26171664&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.69696969697 0.261904761905 -3.0368 0.9792 -7.18866363636 4.15186363636 -0.0460665160698 0.589970830596 69663 207 207;447;663;1046;1279;1936;69663 -7.44748181818 0.4358 -16.5642818182 9.1168 -0.0131951646229 0.675615792143 42994 7 7;93;1782;1970;2239;2545;42994 0.0 0.0468274695945 chr16:768379-768865+ ENST00000407889.6,ENST00000270812.5 NCintron,AntiUTR3 protein-coding gene protein-coding gene ENSG00000282872 39686 547295 chr21:8441746-8441910- NoOverlap chr21 8441746 8441910 - 3.06724003174 55 0.181722466135 2.74326727065 0.323972761089 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441745;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441746-8441910-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441746-8441910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0485457247563 0.0282822237774 0.463035692907 157920 158084 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157919;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441746-8441910-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157920-158084&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TDGAPRATFPAGPSQPSRSRSRRTAAVEMRPAAAGRRSGDGPPPTPPPAPPAHPRTR Same 548698 chr21:8441746-8441910- 40120 40120 -434 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.854545454545 0.976744186047 0.0518509090909 0.2417 -0.763958181818 0.815809090909 0.00230908148577 0.504557257463 40334 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -4.24482545455 0.3501 -6.83980727273 2.59498181818 0.0248224428686 0.607867565818 25391 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0982953255498 chr12:56599964-56600096- not annotated SSU-rRNA_Hsa 39699 530520 chr19:28704300-28704374- NoOverlap chr19 28704300 28704374 - 2.82079999924 25 0.562189364462 -0.701307969093 3.52210796833 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28704299;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28704300-28704374-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28704300-28704374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.011511994828 0.0282338282875 0.744002458865 29195207 29195281 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29195206;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28704300-28704374-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29195207-29195281&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MFLFSSLGYGLPINIVIEKREKGDTSVDCMNEDINISGIR Same 531984 chr19:28704300-28704374- 42497 42497 -2798 0 1328 28700946 28722771 1997 1997;8891;9090;18927;37310;39699 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28700946-28722771&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.36 0.0 2.784656 0.7172 -3.52438 6.309036 0.194725363267 0.887801895648 8998 1227 1227;2244;3295;3647;4332;8998 18.8806 0.7026 -2.181336 21.061936 0.995809870659 1.04408813052 1175 214 214;954;1173;1175;1695;2440 0.792319857325 chr16:46599831-46599962- 0.933761453831 chr16:46599831-46599962- ENST00000590072.1,ENST00000592347.5 NC,NCintron not annotated potentially spurious 39725 512310 chr16:72787392-72787517+ NoOverlap chr16 72787392 72787517 + 3.38227856585 42 0.600621986797 2.80779284452 0.574485721333 ENST00000268489.9,ENST00000397992.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72787391;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72787392-72787517%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72787392-72787517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.183834372858 0.028145618653 0.454641763952 72821291 72821416 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72821290;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72787392-72787517%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72821291-72821416&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLRCRSPGDHLRPRLPGGVGGSGGGGGGRRGRGAVV*VSGRLR Same 513954 chr16:72787392-72787517+ 42014 42014 -2289 6 1044 72786749 72802320 1595 1595;21079;37333;39725;51719;54149;65275;67341;70055 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72786749-72802320&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.714285714286 0.91 -2.4450452381 0.9337 -3.27202142857 0.826976190476 -0.0494327500007 0.449345614652 70811 2453 2453;8633;10458;20402;20517;20622;22628;49851;70811 -12.101497619 0.8921 -18.7564666667 6.65496904762 0.0239416629605 0.712133342701 25678 1956 1956;9416;10906;18989;19008;25678;39101;45598;59430 0.0 0.0 ENST00000563328.4,ENST00000268489.9 NC,AntiCDS not annotated putative regulatory region 39732 560667 chr4:183798313-183798363+ NoOverlap chr4 183798313 183798363 + 5.2108412385 17 0.5402501582 3.21548249266 1.99535874584 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;183798312;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A183798313-183798363%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A183798313-183798363&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0667621765041 0.0281018336548 0.45517677615 184719466 184719516 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;184719465;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A183798313-183798363%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A184719466-184719516&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WRAVPEAGQVGAAARRAAR Same 561655 chr4:183798313-183798363+ 40347 40347 -615 0 258 183797080 183798363 336 336;22308;39732;60389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:183797080-183798363&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.862745098039 1.0 0.308847058824 0.6645 2.46280588235 -2.15395882353 -0.0247007497543 0.133855532721 57259 532 532;13984;57259;61548 -4.45986470588 0.396 0.687552941176 -5.14741764706 -0.0338920233231 0.182452871903 60548 649 649;14910;57149;60548 0.0 0.162477815439 chrX:48700091-48700753+ coding exon(s) STOX2 alternative first coding exon 39798 476447 chr1:244048641-244048865- NoOverlap chr1 244048641 244048865 - 2.62314266543 75 0.214802878869 2.5083120211 0.114830644329 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244048640;225;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048641-244048865-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244048641-244048865&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0582230883034 0.027847372312 0.448879905489 244211943 244212167 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244211942;225;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048641-244048865-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244211943-244212167&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLPPSLPAPPPPNPGSVARSPPPLPPAHPRWQPEERGGAKRAPLSTAPHGSSPAAAAACQTQRGSERGSERGAAGPGGGAGAGGGR Same 478341 chr1:244048641-244048865- 43053 43053 -3255 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.808888888889 0.742574257426 2.51249866667 0.2353 1.917308 0.595190666667 0.0738802835988 0.519324880472 19092 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -0.946573333333 0.3874 -1.40453066667 0.457957333333 0.0845125182008 0.528330107782 13198 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0918141922453 chr11:62762867-62763026+ not annotated putative regulatory region 39813 479919 chr10:8040741-8040773- NoOverlap chr10 8040741 8040773 - 5.65720007636 11 0.878706034943 -0.341463609175 5.99866368554 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8040740;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8040741-8040773-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8040741-8040773&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00414907329138 0.027817610749 0.864044459812 8082704 8082736 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8082703;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8040741-8040773-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8082704-8082736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSAFQLPMFCYMG Same 481827 chr10:8040741-8040773- 37332 37332 2481 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.454545454545 0.0 0.271981818182 1.0 -2.21522727273 2.48720909091 -0.0197085787292 0.448313363735 53961 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -1.61129090909 0.8676 -3.51439090909 1.9031 -0.0185890237834 0.403194216293 47015 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 not annotated putative regulatory region 39823 546424 chr21:8441129-8441743+ NoOverlap chr21 8441129 8441743 + 1.42081953084 205 0.18271063498 1.2419024277 0.178917103134 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441128;615;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441129-8441743%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441129-8441743&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0317481274106 0.0277897552549 0.677504737933 157303 157917 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157302;615;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441129-8441743%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157303-157917&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSVRPSAERPVPLRDATSDQTWRPAEFKHISQRRRRN*PGFPQ*RRVNREEPSAESPPRGGARDMWRTEDPLPGAARGGPKSF*SRPSPWTV*GR*RPPARRARVFPESGCLGMQPKAGGKLHLRLNTGTRPIVNKYRKGKLKRTLKREFKRA*NR*EVNGWGPRSPPGGFNPAAGPAVSAARRIFPAPRSSRPLHPPSLPPPPLLLLPGGGGLR Same 547837 chr21:8441129-8441743+ 30135 30135 9688 147 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.661788617886 0.980861244019 -2.72562536585 0.2873 -2.18423560976 -0.541389756098 -0.0462263922836 0.701760269984 69724 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -8.50062878049 0.3598 -7.12198243902 -1.37864634146 -0.0492789527822 0.400738294283 71054 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.046200765302 chr16:376544-376812- not annotated LSU-rRNA_Hsa 39831 538852 chr2:62091817-62091858- NoOverlap chr2 62091817 62091858 - 4.23107146365 14 0.297377628094 -8.15956439291 12.3906358566 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62091816;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62091817-62091858-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62091817-62091858&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000146433842301 0.0277626143181 0.999302077379 62318952 62318993 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62318951;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62091817-62091858-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62318952-62318993&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLRGSNQVEHCITIDIGDYQLR Same 540230 chr2:62091817-62091858- 29652 29652 10179 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.452380952381 0.0 -0.319471428571 0.0479 0.399114285714 -0.718585714286 0.0353875961753 0.216070294034 26868 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 -0.319471428571 0.015 0.399114285714 -0.718585714286 0.00180250494298 0.322878687509 34475 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 39840 549361 chr22:50731406-50731438+ NoOverlap chr22 50731406 50731438 + 7.21885439516 11 0.652342606657 4.7997908538 2.41906354136 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50731405;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50731406-50731438%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50731406-50731438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0905727001739 0.0277110706905 0.413552922752 51169834 51169866 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51169833;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50731406-50731438%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51169834-51169866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPGQECCMNRPVCCCSETRPVHCLVPSPAAQPTQR Same 550711 chr22:50731406-50731438+ 40181 40181 -341 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606060606061 0.99 0.261290909091 0.8453 2.56002727273 -2.29873636364 -0.0177144832968 0.0959714519052 52550 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -11.9368181818 0.5092 3.40662727273 -15.3434454545 0.0375075153006 -0.0342537333981 21635 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.0720349910827 chrX:72138647-72140776+ ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 39845 546372 chr21:8397813-8397974+ NoOverlap chr21 8397813 8397974 + 3.01969815349 54 0.180826756412 2.52522075457 0.494477398917 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397812;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397813-8397974%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397813-8397974&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0450099468273 0.0276968229756 0.484176794122 158217 158378 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158216;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397813-8397974%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158217-158378&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NPPRVLQPPRQQHSPNPGAEGARPVAALSPLPAPTPAGNPPRGGSPPRGRAGVSLWGDR Same 547785 chr21:8397813-8397974+ 39797 39797 48 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.802469135802 0.918639053254 1.09338333333 0.2347 -0.655196296296 1.74857962963 0.0339540998114 0.610655647831 27323 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 0.908155555556 0.3043 -4.17708333333 5.08523888889 0.16058347636 0.725636338453 7542 Best 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.213706976693 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 39860 508106 chr15:24165553-24165603- NoOverlap chr15 24165553 24165603 - 3.62944118065 17 0.13913983996 -0.0316293993417 3.66107057999 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;24165552;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A24165553-24165603-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A24165553-24165603&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0191235421201 0.0276414787134 0.687860565326 24410700 24410750 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;24410699;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A24165553-24165603-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A24410700-24410750&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VIVVHTLPAATSAQRAELIALT Same 509825 chr15:24165553-24165603- 41158 41158 -1298 0 20813 24165553 24165603 Best 39860 39860 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:24165553-24165603&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.509803921569 0.354166666667 0.0341235294118 0.0295 -0.181841176471 0.215964705882 0.0360930011899 0.306490485084 26659 Best 26659 26659 13.9656764706 0.1644 4.51862941176 9.44704705882 0.205260827782 0.731841948004 6091 Best 6091 6091 0.0 0.0 ENST00000567246.1,ENST00000566245.1 NC,NCintron not annotated retrotransposon sequence 39917 592005 chr9:63121682-63121846- NoOverlap chr9 63121682 63121846 - 2.20755451918 55 0.139299610895 0.892774542353 1.31477997682 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;63121681;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A63121682-63121846-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A63121682-63121846&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0390742117869 0.0274521878289 0.595694751303 67026654 67026818 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;67026653;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A63121682-63121846-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A67026654-67026818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQETHVYISEHIFFPFLQGFGNLPICMAKTDLSLSHQPDKKGVPRDFILPISDVRASIGAGFIYPLVGTVSESHFPK Same 592955 chr9:63121682-63121846- 37132 37132 2785 0 20834 63121682 63124298 Best 39917 39917;43823 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:63121682-63124298&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.49696969697 0.393559928444 13.3360418182 0.5595 5.94927090909 7.38677090909 0.964418755718 1.00826582276 1006 Best 1006 1006;4138 45.3356018182 0.8558 15.3941054545 29.9414963636 0.945192662608 1.01249908044 1852 670 670;1852 0.927153673212 chr6:151036965-151037117+ 0.812389051221 chr6:151036965-151037117+ ENST00000601096.1 NC pseudogene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like (MTHFD1L) pseudogene (ENSG00000182021) 39995 546433 chr21:8442043-8442204+ NoOverlap chr21 8442043 8442204 + 3.01969815349 54 0.180826756412 2.56014999692 0.459548156571 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442042;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442043-8442204%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442043-8442204&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0450099468273 0.027238219585 0.479273974956 158217 158378 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158216;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442043-8442204%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158217-158378&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NPPRVLQPPRQQHSPNPGAEGARPVAALSPLPAPTPAGNPPRGGSPPRGRAGVSSWGGR Same 547846 chr21:8442043-8442204+ 40047 40047 -52 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.802469135802 0.918639053254 1.13557037037 0.2329 -0.762324074074 1.89789444444 0.0370834511998 0.62559387289 26401 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 1.88112407407 0.2854 -2.2598537037 4.14097777778 0.144817243837 0.687211712009 8250 Best 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0301519243584 chr16:376136-376455- not annotated LSU-rRNA_Hsa 40012 520081 chr17:6640188-6640241- NoOverlap chr17 6640188 6640241 - 3.85376116965 18 0.617439366581 -0.528972235819 4.38273340546 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;6640187;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A6640188-6640241-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A6640188-6640241&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0039017174308 0.0271892057412 0.78095001701 6543508 6543561 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;6543507;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A6640188-6640241-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A6543508-6543561&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CVGPSRSGRGVRRPWGKR None NA NA 0 196 6637185 6640241 237 237;7084;40012;65363 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:6637185-6640241&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 0.950146627566 10.4736 0.832 -1.75735 12.23095 0.592771623049 1.04794120789 2583 155 155;1869;2583;20653 1.73430555556 0.4831 -10.0048444444 11.73915 0.251387980526 0.855047386086 5195 975 975;4420;5195;62339 0.0 0.184506794728 chrX:101655690-101657588- ENST00000361413.7,ENST00000570455.1 UTR5intron,NCintron not annotated putative regulatory region 40064 547226 chr21:8402276-8402305- NoOverlap chr21 8402276 8402305 - 3.04839990735 10 0.185073624781 1.81521000564 1.23318990171 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8402275;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8402276-8402305-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8402276-8402305&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0360858151129 0.0270123280032 0.317957665048 118713 118742 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118712;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8402276-8402305-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118713-118742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAAPPGPARPTPGTGTGGPR None NA NA 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.866666666667 0.909090909091 2.45089 0.1125 -0.05197 2.50286 0.0307956872157 0.433978290436 28374 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 8.68993 0.2164 4.72114 3.96879 0.015230240299 0.462658724494 28652 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.221295005142 chr12:56610114-56610215- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 40065 547325 chr21:8446505-8446534- NoOverlap chr21 8446505 8446534 - 3.04839990735 10 0.185073624781 1.81521000564 1.23318990171 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8446504;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446505-8446534-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8446505-8446534&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0360858151129 0.0270123280032 0.317957665048 118713 118742 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118712;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446505-8446534-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118713-118742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAAPPGPARPTPGTGTGGPR None NA NA 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.866666666667 0.909090909091 4.59202 0.1154 1.32771 3.26431 0.0359011574662 0.492024324339 26719 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 5.31788 0.1977 5.73235 -0.41447 -0.0115250432606 0.297304304688 41851 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.20760618754 chr19:14089785-14090420- not annotated SSU-rRNA_Hsa 40238 538854 chr2:62096382-62096510- NoOverlap chr2 62096382 62096510 - 1.92884652563 43 0.178593366584 -2.22967443173 4.15852095737 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62096381;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62096382-62096510-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62096382-62096510&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0167975497494 0.0265265496591 0.910205355138 62323517 62323645 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62323516;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62096382-62096510-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62323517-62323645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QHTEDLKQALTQAPVLGHPNHSLPFTLFVHEINENALGILTQKHGDLLVK Same 540232 chr2:62096382-62096510- 33813 33813 6425 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.395348837209 0.0 -1.51333023256 0.0305 -2.69732325581 1.18399302326 0.0138940866691 0.499108035741 35130 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 -1.97045813953 0.0489 -3.06069302326 1.09023488372 -0.0556606008933 0.531121315375 72920 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 40474 520371 chr17:8221594-8221620- NoOverlap chr17 8221594 8221620 - 7.62324448427 9 0.666320795504 1.32882204735 6.29442243692 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8221593;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8221594-8221620-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8221594-8221620&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0286774408077 0.0256413848852 0.840572275928 8124912 8124938 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8124911;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8221594-8221620-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8124912-8124938&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NTQNDLRWPGIEPGSTAWK Same 521781 chr17:8221594-8221620- 43544 43544 -3070 0 1341 8221594 8227025 2014 2014;17863;26203;31694;31965;37522;40474;40990;66443;67460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8221594-8227025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.4025974026 -0.330488888889 0.8835 -1.65944444444 1.32895555556 -0.0383771305524 0.336836490438 65647 2913 2913;4601;11583;16441;20948;21333;25351;28719;65647;67294 -0.330488888889 0.2762 -1.65944444444 1.32895555556 -0.0245361026718 0.36393306335 52097 5986 5986;8484;15863;24228;24536;28672;31456;32683;52097;52689 0.0 0.0 ENST00000315707.3 NCintron not annotated 6 tRNAs 40487 588195 chr8:144060708-144060743- NoOverlap chr8 144060708 144060743 - 7.45105827848 12 0.261720200402 5.49786663055 1.95319164793 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144060707;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144060708-144060743-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144060708-144060743&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00438582462164 0.0255808125513 0.364440116354 145115611 145115646 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145115610;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144060708-144060743-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145115611-145115646&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APPRGEAGAGRAAGSAGR Same 589141 chr8:144060708-144060743- 45654 45654 -5167 0 441 144060060 144063934 630 630;5684;20291;40487 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144060060-144063934&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.805555555556 0.519230769231 5.06463333333 0.5576 -2.39761666667 7.46225 0.0609539393827 0.848934147043 21092 1144 1144;2250;2948;21092 1.008925 0.2644 -7.01908333333 8.02800833333 0.0217066605004 0.664108979391 26413 685 685;2819;5734;26413 0.0 0.112208104936 chr1:21887426-21887674- ENST00000567871.1 UTR5intron coding exon(s) OPLAH alternative first exon 40627 503432 chr14:23094814-23094840- NoOverlap chr14 23094814 23094840 - 7.64713337686 9 0.884882547918 3.21398897386 4.433144403 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23094813;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23094814-23094840-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23094814-23094840&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0824037463815 0.0251275084213 0.63464524249 23564023 23564049 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23564022;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23094814-23094840-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23564023-23564049&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASGSARTVVDEVRAGMEIAPVPALTAAAR Same 505271 chr14:23094814-23094840- 36993 36993 3634 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 1.63636363636 1.06948888889 0.9924 -1.87608888889 2.94557777778 -0.0274328762549 0.465970861905 58956 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 -1.46243333333 0.5141 -5.40721111111 3.94477777778 -0.0246830014239 0.468862845384 52227 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 ENST00000262710.5,ENST00000319074.5 CDSintron,AntiUTR5 protein-coding gene protein-coding gene ENSG00000283654 40692 529175 chr19:51690780-51690878+ NoOverlap chr19 51690780 51690878 + 1.80654545083 33 0.438034730459 -1.77445154479 3.58099699562 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51690779;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51690780-51690878%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51690780-51690878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0187325275289 0.0249230138769 0.80467005611 52194033 52194131 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52194032;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51690780-51690878%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52194033-52194131&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETLVGGWGRCLGPGNL*DSRLPLSPHPPPQAPGSPGACWEPRPGLR Same 530634 chr19:51690780-51690878+ 38903 38903 1789 9 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.656565656566 0.297 -3.22072727273 0.795 -5.61937878788 2.39865151515 -0.0492169163382 0.560111520797 70756 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 -11.5595363636 0.4152 -12.4526242424 0.893087878788 -0.0561064214784 0.451105703041 73004 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.133509444439 chr1:46341844-46343802+ ENST00000602324.1 AntiNCintron protein-coding gene protein-coding gene ENSG00000182310 40862 493328 chr12:117099377-117099481+ NoOverlap chr12 117099377 117099481 + 3.97421710065 35 0.461887976981 3.39401141299 0.580205687668 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;117099376;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A117099377-117099481%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A117099377-117099481&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0992353596813 0.024408462651 0.418603983041 117537182 117537286 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;117537181;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A117099377-117099481%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A117537182-117537286&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VRPRVGTPAKARSRGFRVGPERGLI*RRRAARRGPSAR Same 495315 chr12:117099377-117099481+ 40474 40474 388 12 21183 117099377 117099481 Best 40862 40862 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:117099377-117099481&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.790476190476 1.32352941176 -2.71154285714 0.7695 -1.51683428571 -1.19470857143 -0.0576004735619 0.257675082759 72281 Best 72281 72281 -4.35747428571 0.3415 -6.41144285714 2.05396857143 -0.0080621432721 0.543211573332 39784 Best 39784 39784 0.0 0.0 ENST00000547006.1,ENST00000335209.11,ENST00000470612.5 NC,AntiUTR5,AntiNC not annotated putative regulatory region 40894 525527 chr18:26549762-26549848- NoOverlap chr18 26549762 26549848 - 3.094431092 29 0.779902289643 1.86638969491 1.22804139709 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26549761;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26549762-26549848-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26549762-26549848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.144284681959 0.0243203409295 0.470310548999 24129726 24129812 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;24129725;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26549762-26549848-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A24129726-24129812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAGSGAVSPMGKRDPASSLAAFPVSEVPAPARLRQRSPEGER Same 526970 chr18:26549762-26549848- 43615 43615 -2721 0 513 26546760 26549891 768 768;8399;25501;30998;36827;39211;40894;58515;70807;71876 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26546760-26549891&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.689655172414 0.967741935484 0.320575862069 0.947 -2.97655862069 3.29713448276 0.108339812406 0.660909993908 15029 2222 2222;11084;12141;14614;15029;28171;62885;67707;71661;73517 -5.95373103448 0.3986 -7.42244827586 1.46871724138 -0.0251734125078 0.488086559056 52681 2942 2942;16429;16512;26392;33196;52681;55735;64991;73449;73633 0.0 0.156046476033 chr17:42673176-42673296- ENST00000580638.5,ENST00000580191.5,ENST00000317932.11 UTR5,CDSintron,UTR5intron coding exon(s) KCTD1 5' extension 40966 594042 chr9:136245586-136245636- NoOverlap chr9 136245586 136245636 - 5.53768228783 17 0.411849079298 3.89778243093 1.6398998569 ENST00000358701.9,ENST00000616829.4 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136245585;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136245586-136245636-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136245586-136245636&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0258834296965 0.0240737753468 0.405198014143 139137432 139137482 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139137431;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136245586-136245636-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139137432-139137482&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CGAAVPRGRGRRVGAGQRQRAR Same 594998 chr9:136245586-136245636- 43304 43304 -2338 0 518 136245441 136267514 774 774;1246;1671;1737;14484;26677;40966;49975;52795 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136245441-136267514&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.803921568627 1.30769230769 -1.19175882353 0.5163 -1.10382941176 -0.0879294117647 -0.0275288827369 0.283016209332 58996 109 109;1226;1522;2295;2801;2860;36147;58996;63557 -22.4146235294 0.691 -20.2771823529 -2.13744117647 0.0141932238395 0.190828716106 29069 1329 1329;2089;2472;2567;3628;6432;23671;29069;54815 0.0 0.42186510484 chr1:180154908-180155172+ ENST00000358701.9 CDS not annotated putative regulatory region 40990 520379 chr17:8226236-8226301- NoOverlap chr17 8226236 8226301 - 3.29075456478 22 0.69509422446 0.0622226880355 3.22853187675 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8226235;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8226236-8226301-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8226236-8226301&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0219110053156 0.0240023773289 0.681218388614 8129554 8129619 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8129553;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8226236-8226301-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8129554-8129619&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ISGTFMAASAPWLSWLKRLSSKQEILGSNPSGAFIQLK Same 521789 chr17:8226236-8226301- 44433 44433 -3443 0 1341 8221594 8227025 2014 2014;17863;26203;31694;31965;37522;40474;40990;66443;67460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8221594-8227025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.530303030303 0.66 0.845963636364 1.0 -0.578104545455 1.42406818182 0.0619012152503 0.446122935404 20948 2913 2913;4601;11583;16441;20948;21333;25351;28719;65647;67294 0.845963636364 0.3126 -0.578104545455 1.42406818182 0.0151576094764 0.463367582299 28672 5986 5986;8484;15863;24228;24536;28672;31456;32683;52097;52689 0.0 0.0 ENST00000315684.12 UTR3 not annotated 6 tRNAs 41023 588876 chr9:35829249-35829284+ NoOverlap chr9 35829249 35829284 + 6.29974989469 12 0.743897662826 3.45474199454 2.84500790015 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35829248;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35829249-35829284%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35829249-35829284&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.101687610238 0.0238684526287 0.496152452643 35829246 35829281 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35829245;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35829249-35829284%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35829246-35829281&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRRRGAWLSPVQR Same 589820 chr9:35829249-35829284+ 39947 39947 1076 0 277 35829249 35842438 362 362;425;536;1007;2241;12378;33483;41023;50301;66958 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35829249-35842438&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 1.28571428571 -5.12033333333 0.974 -4.43869166667 -0.681641666667 -0.0209779348514 0.23445454305 54814 527 527;571;572;815;1277;3226;54814;57000;63888;72554 -9.98176666667 0.4553 -8.824975 -1.15679166667 -0.0242257739321 0.277441989059 51774 753 753;986;1017;1241;1441;19083;51774;53783;58586;72919 0.0 0.0788204372896 chr16:381701-381821- ENST00000377991.8,ENST00000464519.6,ENST00000377996.5 UTR5,NC,UTR5intron coding exon(s) TMEM8B 5' extension by 5 exons 41043 574595 chr6:34237652-34237774- NoOverlap chr6 34237652 34237774 - 2.97801219254 41 0.272203830759 0.98177315113 1.99623904141 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34237651;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237652-34237774-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34237652-34237774&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00813813968363 0.0237721849553 0.646035219291 34205429 34205551 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34205428;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237652-34237774-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34205429-34205551&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSLSCGGRPTPHSPAAPQPVSLPAPHPGPGSGSGSGSSGSGRRARCAGLLR Same 575627 chr6:34237652-34237774- 39330 39330 1713 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.837398373984 0.912177985948 -2.05440731707 0.4063 -5.14278536585 3.08837804878 -0.0226324758544 0.662518035114 55937 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -4.10739756098 0.2428 -8.6505097561 4.54311219512 0.000791154891622 0.670375866267 34965 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.160352255906 chr22:20243406-20243684- ENST00000311487.9,ENST00000478214.1 AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000186577 41126 593113 chr9:122905370-122905417- NoOverlap chr9 122905370 122905417 - 3.63647510484 16 0.889611467155 -1.96186251938 5.59833762422 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;122905369;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905370-122905417-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A122905370-122905417&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0794421978729 0.0235024436355 0.888917721877 125667649 125667696 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;125667648;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905370-122905417-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A125667649-125667696&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLGGWGYYAFLPTPDSRACVISR*VGSNFSRELDR Same 594066 chr9:122905370-122905417- 41414 41414 -288 8 637 122905081 122905417 981 981;3503;11688;13684;41126;71692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:122905081-122905417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5625 1.69411764706 2.2584125 0.9991 0.01473125 2.24368125 0.0822359813839 0.470780791543 17978 Best 17978 17978;19658;42486;47356;64280;71470 3.127 0.3799 -0.6025625 3.7295625 0.0583993348382 0.517802374564 17127 Best 17127 17127;21574;24738;33390;36324;59653 0.0 0.0 not annotated putative regulatory region 41191 589093 chr9:68303101-68303151+ NoOverlap chr9 68303101 68303151 + 4.41582347014 17 0.487980827488 0.327205919168 4.08861755098 ENST00000342833.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;68303100;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A68303101-68303151%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A68303101-68303151&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0143720323197 0.0232773158554 0.733007937069 70918017 70918067 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;70918016;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A68303101-68303151%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A70918017-70918067&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGEPAVPRAVAPAGAAGGPVGRGCASPR Same 590039 chr9:68303101-68303151+ 41091 41091 100 0 309 68303101 68304252 416 416;11070;41191 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:68303101-68304252&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.764705882353 0.566666666667 -6.04503529412 0.7401 -8.62897647059 2.58394117647 -0.01905312296 0.497303267891 53518 798 798;1523;53518 -9.0465 0.588 -14.4071058824 5.36060588235 -0.0211303234145 0.563817278677 49028 2132 2132;2152;49028 1.00107394733 chr9:41127130-41128383- 0.921941437572 chr9:41127130-41128383- ENST00000342833.3 CDS not annotated FOXD4L3 contains a frameshift relative to its presumptive parent gene FOXD4, resulting in a terminal 55aa region that is potentially translated in a different frame. FOXD4L6 has been maintained as protein-coding at the present time due to published evidence for its functionality, although the evidence presented is not unequivocal and it is possible that the gene is pseudogenic. See also FOXD4L6. 41192 591960 chr9:41128184-41128234- NoOverlap chr9 41128184 41128234 - 4.41582347014 17 0.487980827488 0.327205919168 4.08861755098 ENST00000622588.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;41128183;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41128184-41128234-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A41128184-41128234&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0143720323197 0.0232773158554 0.733007937069 70918067 70918017 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;70918066;-49;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41128184-41128234-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A70918067-70918017&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGEPAVPRAVAPAGAAGGPVGRGCASPR Same 592914 chr9:41128184-41128234- 41092 41092 100 0 310 41127083 41128234 417 417;11071;41192 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:41127083-41128234&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.764705882353 0.566666666667 -4.91011764706 0.7004 -6.10475882353 1.19464117647 -0.0198891253096 0.387357202252 54069 738 738;1702;54069 -11.8414764706 0.6145 -18.8301882353 6.98871176471 -0.0240238586856 0.604358281656 51587 2080 2080;2940;51587 1.05838710134 chr9:68302952-68304205+ 0.905433764993 chr9:116800-118119- ENST00000622588.1,ENST00000617940.1 CDS,AntiNCintron not annotated FOXD4L6 contains a frameshift relative to its presumptive parent gene FOXD4, resulting in a terminal 55aa region that is potentially translated in a different frame. FOXD4L6 has been maintained as protein-coding at the present time due to published evidence for its functionality, although the evidence presented is not unequivocal and it is possible that the gene is pseudogenic. See also FOXD4L3. 41229 511830 chr16:54938845-54938880+ NoOverlap chr16 54938845 54938880 + 5.79228338351 12 0.898864474454 1.52403321862 4.26825016489 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54938844;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54938845-54938880%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54938845-54938880&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0754569278783 0.0231474489686 0.685569821831 54972757 54972792 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54972756;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54938845-54938880%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54972757-54972792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HAAPRGGEANEGAAR Same 513471 chr16:54938845-54938880+ 39294 39294 1935 0 496 54928752 54938880 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.21008403361 4.322825 0.9712 1.91926666667 2.40355833333 0.0791083458866 0.439886153672 18396 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -5.7022 0.7114 -8.99770833333 3.29550833333 -0.0342712435882 0.460281626066 60868 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.0764219623931 chr2:98821857-98823537- ENST00000560487.1 NCintron not annotated putative regulatory region 41242 595747 chrX:135253382-135253432+ NoOverlap chrX 135253382 135253432 + 4.28611756774 17 0.362401770047 -0.783664573641 5.06978214138 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chrX;135253381;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A135253382-135253432%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chrX%3A135253382-135253432&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00157760298471 0.0231021958196 0.842662244384 134387330 134387380 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chrX;134387329;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chrX%3A135253382-135253432%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chrX%3A134387330-134387380&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPTENVLIFLINRQLGRHRSDIDLSR Same 596389 chrX:135253382-135253432+ 38279 38279 2963 0 21310 135253382 135253432 Best 41242 41242 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX:135253382-135253432&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.450980392157 0.386363636364 7.70976470588 0.5852 -5.13862352941 12.8483882353 0.351692943139 1.05406481894 4656 Best 4656 4656 7.70976470588 0.1829 -5.13862352941 12.8483882353 0.190899323145 0.874118393193 6502 Best 6502 6502 0.0 0.0 ENST00000427686.1,ENST00000494295.1 NC,AntiNCintron protein-coding gene protein coding gene ENSG00000238210 41243 547918 chr22:17047306-17047449+ NoOverlap chr22 17047306 17047449 + 1.90240418725 48 0.132257254393 -0.195745856579 2.09815004383 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;17047305;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A17047306-17047449%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A17047306-17047449&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0345602399005 0.0230962214365 0.683375056509 17528196 17528339 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;17528195;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A17047306-17047449%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A17528196-17528339&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASALVLQVVKALIVLTPQFLSHDKDQLTKELQQHVKSVTAPCKYPRKLSEGR Same 549332 chr22:17047306-17047449+ 37235 37235 4008 0 7836 17044888 17047449 11264 11264;33643;41243 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:17044888-17047449&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.19944598338 0.0223979166667 0.0429 -2.62078125 2.64317916667 0.0269189541831 0.670878943981 29910 27793 27793;29910;31309 11.9849020833 0.2856 -4.01738541667 16.0022875 0.83492114403 1.02921726939 2371 Best 2371 2371;2648;3089 0.0 0.592897442097 chr16:20624096-20624215- ENST00000609596.1 NC pseudogene cat eye syndrome chromosome region, candidate 7 unprocessed pseudogene (ENSG00000237438) 41264 524454 chr18:47594763-47594801+ NoOverlap chr18 47594763 47594801 + 6.04418480511 13 0.612353938882 2.85444612686 3.18973867824 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;47594762;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47594763-47594801%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A47594763-47594801&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0620434942424 0.0230347943027 0.557544153166 45121134 45121172 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;45121133;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47594763-47594801%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A45121134-45121172&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RLWTGIYHRIRSPPLN Same 525890 chr18:47594763-47594801+ 42698 42698 -1434 0 9000 47594360 47602035 13245 13245;26978;27676;41264;47167;69881;72567 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:47594360-47602035&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.564102564103 1.61157024793 -0.100776923077 0.9497 -1.91365384615 1.81287692308 -0.0268050414237 0.409230367243 58565 6593 6593;11265;14639;28210;30783;58565;63900 -9.77286923077 0.8012 -10.7153923077 0.942523076923 -0.0464944559284 0.3598097124 69649 7430 7430;14557;25346;33451;40777;53603;69649 0.0 0.0 not annotated potentially spurious 41375 590264 chr9:124693710-124693745+ NoOverlap chr9 124693710 124693745 + 6.33734998107 12 0.81359578851 4.64110823472 1.69624174635 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;124693709;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A124693710-124693745%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A124693710-124693745&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132166911043 0.0226865742166 0.346670021646 127455989 127456024 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;127455988;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A124693710-124693745%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A127455989-127456024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLMAALNIHCCRWV Same 591211 chr9:124693710-124693745+ 39454 39454 1921 0 21355 124693710 124693745 Best 41375 41375 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:124693710-124693745&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.4 1.70919166667 1.0 0.983425 0.725766666667 0.00225663634243 0.306294919651 40357 Best 40357 40357 2.706825 0.8537 -1.68175 4.388575 0.070833630032 0.512127595783 15052 Best 15052 15052 0.0 0.0 ENST00000385004.1,ENST00000429139.1,ENST00000344523.8 NC,NCintron,AntiCDSintron not annotated deeply conserved miRNA 41376 504803 chr14:76139094-76139120- NoOverlap chr14 76139094 76139120 - 7.55083333121 9 0.894922984326 2.91028881073 4.64054452048 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;76139093;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76139094-76139120-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A76139094-76139120&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0747055348715 0.0226863943882 0.661932432076 76605437 76605463 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;76605436;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76139094-76139120-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A76605437-76605463&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IKGQSGEHKGF Same 506649 chr14:76139094-76139120- 37723 37723 3653 0 1204 76131383 76139120 1818 1818;4345;22997;27107;30537;31486;38498;41376;68067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:76131383-76139120&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.818181818182 2.45317777778 0.9986 1.33444444444 1.11873333333 -0.0116786588448 0.308070470249 48242 4515 4515;9493;16210;27689;28296;48242;62795;67676;71399 -9.69022222222 0.8673 -15.6411555556 5.95093333333 -0.057297758961 0.52179986308 73189 13549 13549;42486;43506;45749;54311;55020;58474;69721;73189 0.0 0.0 not annotated putative regulatory region 41392 478474 chr10:100866801-100866902+ NoOverlap chr10 100866801 100866902 + 2.71089406136 34 0.923903257801 1.56349997748 1.14739408388 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100866800;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100866801-100866902%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100866801-100866902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.149119794439 0.0226368429996 0.492227870777 102626558 102626659 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102626557;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100866801-100866902%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102626558-102626659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVNCVMDHIKQALRLEAGFNLHGRLACLPSKAPRGTPSCNR Same 480369 chr10:100866801-100866902+ 39845 39845 1547 0 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.529411764706 0.42032967033 0.335494117647 0.999 -0.405611764706 0.741105882353 0.0755890809508 0.450899781704 18866 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 -8.58366764706 0.9224 -9.85102352941 1.26735588235 -0.019832875185 0.487820495781 47948 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 41398 501029 chr14:28768053-28768085+ NoOverlap chr14 28768053 28768085 + 7.42265453122 11 0.533958953231 5.55949997902 1.8631545522 ENST00000313071.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28768052;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28768053-28768085%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28768053-28768085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0549860437576 0.0226249290116 0.339828177832 29237259 29237291 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29237258;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28768053-28768085%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29237259-29237291&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPGQGQLLDAGPVERRRVHRRHHGQAAAPLHHLAGQAGLQAR Same 502921 chr14:28768053-28768085+ 44083 44083 -2685 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 1.75 -5.37057272727 0.9599 -7.95635454545 2.58578181818 -0.0307063811351 0.469660325076 60964 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -39.3668454545 0.9873 -41.0803818182 1.71353636364 0.0493333174588 0.0771215685948 18874 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.169155904614 chr5:73446965-73448362- ENST00000313071.6 CDS not annotated putative regulatory region 41436 547243 chr21:8436061-8436099- NoOverlap chr21 8436061 8436099 - 5.69394613688 13 0.166970086448 3.41545386039 2.27849227649 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436060;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436061-8436099-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436061-8436099&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00765409091465 0.0224835247138 0.442276908336 152235 152273 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152234;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436061-8436099-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152235-152273&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AALGRTRAPNGATPR Same 548646 chr21:8436061-8436099- 43751 43751 -2315 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.871794871795 1.625 1.52049230769 0.2424 -1.86747692308 3.38796923077 0.0143351160376 0.543462024925 34967 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 1.21736923077 0.2234 1.4734 -0.256030769231 -0.0189458050309 0.332900633718 47273 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.138056359068 chr12:48996740-48998666- ENST00000613635.1 AntiNC not annotated SSU-rRNA_Hsa 41510 547283 chr21:8440566-8440601- NoOverlap chr21 8440566 8440601 - 5.09744164844 12 0.163375804278 0.880550018822 4.21689162962 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8440565;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440566-8440601-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8440566-8440601&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0076836756914 0.0222944728603 0.688336008842 156740 156775 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156739;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440566-8440601-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156740-156775&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLGGGAAGRRRGAGAAVGR Same 548686 chr21:8440566-8440601- 44531 44531 -3021 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.861111111111 1.28571428571 1.607225 0.2562 1.17115833333 0.436066666667 0.0150546164583 0.283452076036 34625 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 3.329525 0.4217 6.45448333333 -3.12495833333 -0.0181447684655 0.218313548944 46660 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 41535 572281 chr6:99409306-99409359+ NoOverlap chr6 99409306 99409359 + 4.58116111325 18 0.950205572934 3.54881110456 1.03235000869 ENST00000369239.9,ENST00000438806.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;99409305;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99409306-99409359%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A99409306-99409359&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.157924603402 0.0222283582481 0.345503575224 99857182 99857235 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;99857181;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99409306-99409359%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A99857182-99857235&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MKSTLRWTKSSPMLKEYCSLFFLQINTIYSLGHTCVMNWDSR Same 573306 chr6:99409306-99409359+ 41818 41818 -283 0 559 99400282 99414614 850 850;6627;41535;67777 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:99400282-99414614&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.296703296703 -0.516661111111 0.9705 -0.0738666666667 -0.442794444444 -0.0304125181883 0.260863170047 60784 2736 2736;9278;39855;60784 -13.61135 0.816 -13.2119888889 -0.399361111111 -0.0429258394034 0.318341601188 67353 3532 3532;3708;32779;67353 0.0 0.0 ENST00000369239.9,ENST00000463021.1 AntiCDS,AntiNC not annotated putative regulatory region 41584 496976 chr12:114448691-114448738- NoOverlap chr12 114448691 114448738 - 4.68488752097 16 0.72518501564 1.55651884619 3.12836867478 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;114448690;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A114448691-114448738-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A114448691-114448738&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0758279824653 0.0220609940941 0.599801041677 114886496 114886543 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;114886495;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A114448691-114448738-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A114886496-114886543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLASVLSGRWQAAGPGAGSRSEVP Same 498984 chr12:114448691-114448738- 42262 42262 -678 0 1071 114441286 114448738 1628 1628;41584 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:114441286-114448738&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.8125 0.770053475936 -2.94945625 0.9542 -5.16435 2.21489375 -0.0452498940242 0.465258142001 69339 13050 13050;69339 -6.15810625 0.4342 -8.87014375 2.7120375 -0.0264803461351 0.464459345855 53904 17108 17108;53904 0.0 0.0826507256978 chr16:15395898-15396207+ not annotated putative regulatory region 41587 527727 chr19:28609336-28609524+ NoOverlap chr19 28609336 28609524 + 1.52788888976 63 0.129958667427 -2.50811584601 4.03600473578 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28609335;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28609336-28609524%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28609336-28609524&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0365513103034 0.0220530484579 0.927847194571 29100243 29100431 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29100242;189;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28609336-28609524%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29100243-29100431&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TCTVEGHKVIHQFLYMPDCPLPLLGRDLLSKLRVTISFIKHSSLQLKLPRMGVIMALIVPWEEEWRLFLSEPGQEIGQALAK Same 529174 chr19:28609336-28609524+ 29811 29811 11776 0 19357 28608133 28611285 36033 36033;38545;39010;41587;43070;45508;47044;48128 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28608133-28611285&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.465608465608 0.0 -1.28657301587 0.0297 -1.13626666667 -0.150306349206 -0.0037301227596 0.384407389957 43455 26060 26060;29422;36006;38223;39249;43455;47313;48514 -1.28657301587 0.0093 -1.13626666667 -0.150306349206 -0.0349898605018 0.500790687737 61444 27094 27094;34090;60003;61081;61427;61444;64226;70401 0.0 0.0 ENST00000587961.1,ENST00000585394.1 NCintron,AntiNCintron not annotated potentially spurious 41612 547169 chr21:8394828-8394878- NoOverlap chr21 8394828 8394878 - 2.40018236637 17 0.161788716402 0.584625001997 1.81555736437 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8394827;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394828-8394878-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8394828-8394878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0320899167865 0.0219927948816 0.462313380549 155215 155265 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155214;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394828-8394878-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155215-155265&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APRPPDPPRRRREPPPRPPTPTPSGPLPGTAPR Different 548575 chr21:8394756-8394884- 38589 38589 3023 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.843137254902 1.50738916256 2.62697058824 0.2212 0.861782352941 1.76518823529 0.0194646327572 0.437010241134 32832 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 6.24019411765 0.2665 3.21094117647 3.02925294118 0.0596551750199 0.492074416479 16893 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.053532989796 chr3:9909217-9909283+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 41655 572458 chr6:108165969-108166019+ NoOverlap chr6 108165969 108166019 + 3.4754823271 17 0.837441151787 -1.74441763233 5.21989995942 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108165968;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108165969-108166019%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108165969-108166019&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0614709114356 0.0218720133494 0.862674139362 108487173 108487223 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108487172;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108165969-108166019%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108487173-108487223&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RQTPPGVGGKAKWARDALFPSPR Same 573485 chr6:108165969-108166019+ 40847 40847 808 0 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.546428571429 0.679894117647 0.9897 -1.33358823529 2.01348235294 0.0286692581765 0.459526283735 29220 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 -1.34358823529 0.5658 -6.50995882353 5.16637058824 0.0583952582726 0.585798736759 17128 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 not annotated putative regulatory region 41693 518096 chr17:48614972-48615094+ NoOverlap chr17 48614972 48615094 + 2.96123174051 41 0.73788982614 2.43619021483 0.525041525684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48614971;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48614972-48615094%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48614972-48615094&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.215456598026 0.021769850927 0.442592782258 46692334 46692456 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46692333;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48614972-48615094%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46692334-46692456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLSLHGSRGSLALPPPPTPQTKIYHHLKRSSLYISKKGCQFINSFR Same 519497 chr17:48614972-48615094+ 47800 47800 -6107 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.552845528455 0.850790513834 -0.51927804878 0.8478 -2.8448902439 2.32561219512 0.0439405982272 0.616683279096 24537 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -6.94247804878 0.6198 -8.93084390244 1.98836585366 0.00791309074014 0.548380750215 31633 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000567101.2 AntiNCintron not annotated putative regulatory region 41728 495279 chr12:51807534-51807563- NoOverlap chr12 51807534 51807563 - 5.82111992836 10 0.921733424887 -0.848689925671 6.66980985403 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;51807533;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51807534-51807563-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A51807534-51807563&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0410504772976 0.0216557157847 0.910457880246 52201318 52201347 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52201317;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A51807534-51807563-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52201318-52201347&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADDVWYRSSG Same 497277 chr12:51807534-51807563- 40410 40410 1318 0 145 51807534 51814833 173 173;1274;1566;23248;41728 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:51807534-51814833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 1.33333333333 11.23015 0.9956 -2.0652 13.29535 0.58327838958 1.0236932066 2640 290 290;1358;1512;2640;66049 -0.01755 0.9002 -23.77504 23.75749 0.248939289819 1.06726672188 5219 69 69;2037;2228;5219;35256 0.0 0.0 ENST00000354534.10 AntiUTR3 protein-coding gene protein-coding gene ENSG00000284730 41742 577732 chr7:27185889-27185948+ NoOverlap chr7 27185889 27185948 + 3.44797999412 20 0.827806515602 -0.0966950833797 3.5446750775 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27185888;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27185889-27185948%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27185889-27185948&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0307081373112 0.0216215574736 0.702424052864 27225508 27225567 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27225507;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27185889-27185948%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27225508-27225567&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHSLIHGHFRSALVPSVPKPPTAR Same 578771 chr7:27185889-27185948+ 40981 40981 761 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 1.03896103896 -0.465145 0.9984 -4.87739 4.412245 0.0702227807026 0.690310660563 19647 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -5.81741 0.5276 -9.22433 3.40692 -0.006466158498 0.521031500622 38844 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000520395.1,ENST00000520360.5 NC,NCintron not annotated putative regulatory region 41831 547223 chr21:8401994-8402026- NoOverlap chr21 8401994 8402026 - 7.32595452395 11 0.202494156488 5.4264545522 1.89949997176 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8401993;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401994-8402026-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8401994-8402026&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00229488234446 0.021313090891 0.34576925616 118431 118463 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118430;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401994-8402026-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118431-118463&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARPAGPPARAR Same 548625 chr21:8401994-8402026- 45008 45008 -3177 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.939393939394 1.2 2.99641818182 0.1161 2.42097272727 0.575445454545 0.0307392200829 0.280777012377 28391 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 7.12887272727 0.1501 0.119727272727 7.00914545455 0.0244394596522 0.602728754623 25517 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.455774617996 chr12:56609736-56609937- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 41832 547322 chr21:8446225-8446257- NoOverlap chr21 8446225 8446257 - 7.32595452395 11 0.202494156488 5.4264545522 1.89949997176 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8446224;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446225-8446257-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8446225-8446257&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00229488234446 0.021313090891 0.34576925616 118431 118463 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118430;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446225-8446257-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118431-118463&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARPAGPPARTR Same 548725 chr21:8446225-8446257- 45009 45009 -3177 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.909090909091 1.155 2.48284545455 0.1069 3.60137272727 -1.11852727273 0.0312080381283 0.158406159338 28232 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 3.36395454545 0.1911 6.47565454545 -3.1117 -0.0123267976796 0.211720475633 42401 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.319308319551 chr10:123754663-123754762- not annotated SSU-rRNA_Hsa 41869 573460 chr6:167976938-167977060+ NoOverlap chr6 167976938 167977060 + 1.80036341526 41 0.2393526453 -2.19075608617 3.99111950143 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;167976937;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167976938-167977060%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A167976938-167977060&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00588774990705 0.02118301523 0.886060926501 168377618 168377740 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;168377617;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A167976938-167977060%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A168377618-168377740&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATPSCSPTPAPVLVTGGSERRPEAEAMPAGSGRWGGFWERRTRQLQSPVR Same 574488 chr6:167976938-167977060+ 34649 34649 7220 0 327 167976938 168002143 446 446;1208;2908;3125;34549;35422;36527;37043;41869 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:167976938-168002143&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.731707317073 0.653907496013 5.42901219512 0.3624 -1.46977560976 6.89878780488 0.269144841562 1.00016848254 6372 1167 1167;2159;2163;3104;6372;25026;25456;26766;27130 7.7123097561 0.3318 -0.519402439024 8.23171219512 0.458532983899 0.826742070694 3691 139 139;2661;3543;3691;4447;13096;13690;18631;40134 0.0 0.122973085712 chr16:775146-775283- ENST00000538528.1,ENST00000441716.2 AntiNC,AntiNCintron pseudo-exon KIF25 has 8 exons upstream that are coding as part of this locus in other mammals. At least two of these exons are clearly pseudogenic. This suggests the locus may be a pseudogene, although it has been maintained as coding due to published experimental support for its functionality. 41891 547208 chr21:8398149-8398619- NoOverlap chr21 8398149 8398619 - 1.87260321903 157 0.182164730375 1.78741719246 0.0851860265633 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398148;471;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398149-8398619-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398149-8398619&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0346129024389 0.0211113393698 0.588445055989 158552 159022 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158551;471;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398149-8398619-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158552-159022&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGASGLRERQLS*GKLRREPATRWFD*SFAPIPRSDDRFARQDRYGPPPEFPLASPCPGIVHHLSGPNTCARAPPPRRGGRDGPVVRPRRTGEASGSHLGRRARRPSPSLRHGGFRASPRLAHVLDSLVRVSRRVGWVADVAADPVRSLRRPPLRGTRAWPR Same 548610 chr21:8398149-8398619- 64040 64040 -22149 23 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.675159235669 1.12321144674 -1.37599235669 0.2657 -1.18803949045 -0.187952866242 0.00466536398544 0.629190704973 39191 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -2.30495541401 0.2937 -2.7117133758 0.406757961783 0.0643308269822 0.550188580078 16104 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.125119930796 chr12:56600201-56600490- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 41892 547304 chr21:8442378-8442848- NoOverlap chr21 8442378 8442848 - 1.87260321903 157 0.182164730375 1.78741719246 0.0851860265633 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442377;471;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442378-8442848-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442378-8442848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0346129024389 0.0211113393698 0.588445055989 158552 159022 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158551;471;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442378-8442848-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158552-159022&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGASGLRERQLS*GKLRREPATRWFD*SFAPIPRSDDRFARQDRYGPPPEFPLASPCPGIVHHLSGPNTCARAPPPRRGGRDGPVVRPRRTGEASGSHLGRRARRPSPSLRHGGFRASPRLAHVLDSLVRVSRRVGWVADVAADPVRSLRRPPLRGTRAWPR Same 548707 chr21:8442378-8442848- 64041 64041 -22149 23 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.675159235669 1.12321144674 -1.28848407643 0.2697 -0.882691719745 -0.405792356688 0.00122971978185 0.614185755542 40884 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -2.8611 0.3046 -2.82454267516 -0.0365573248408 0.0468435267556 0.531643301442 19367 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 41929 510177 chr15:101737259-101737336- NoOverlap chr15 101737259 101737336 - 2.93563075736 26 0.149911673739 0.631076899572 2.30455385779 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;101737258;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A101737259-101737336-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A101737259-101737336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0175141375664 0.0210038546314 0.59501097168 102277462 102277539 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;102277461;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A101737259-101737336-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A102277462-102277539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QESSSSFSPICFVDSDEPNLTSVLEHLEDTKNNHSVKR Same 511912 chr15:101737259-101737336- 40880 40880 1049 0 21524 101737259 101737336 Best 41929 41929 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:101737259-101737336&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.423076923077 0.286764705882 4.69997692308 0.3807 -0.087 4.78697692308 0.0808970262791 0.781242057187 18154 Best 18154 18154 12.3616884615 0.3792 1.01215769231 11.3495307692 0.584937111101 0.866180338692 3210 Best 3210 3210 0.834449832153 chr15:75854386-75854487+ 0.884647023085 chr15:75854386-75854487+ ENST00000558592.1 NC pseudogene ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2) pseudogene (ENSG00000260660) 41986 527272 chr19:12208728-12208769+ NoOverlap chr19 12208728 12208769 + 5.10178576623 14 0.235452157517 -2.71706437213 7.81885013836 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12208727;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12208728-12208769%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12208728-12208769&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00964675363299 0.0208525561704 1.01453188607 12319543 12319584 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12319542;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12208728-12208769%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12319543-12319584&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFSCPSSFQVPERIHTREKPYECKQCGK Same 528718 chr19:12208728-12208769+ 39870 39870 2116 0 21547 12207347 12208769 Best 41986 41986;42274 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12207347-12208769&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.309523809524 1.0 9.14125 0.3776 0.0679571428571 9.07329285714 0.109952157846 0.943890089908 14872 5337 5337;14872 48.5563928571 0.7739 1.16550714286 47.3908857143 1.02242527733 0.992447733211 747 590 590;747 0.51254932383 chr19:12272407-12274063- 0.560982693851 chr19:52765587-52767755- ENST00000426044.1 NCintron pseudogene zinc finger protein pseudogene (ENSG00000234773) 42077 577713 chr7:27172881-27172946+ NoOverlap chr7 27172881 27172946 + 3.29509085688 22 0.801007095445 0.391049997373 2.9040408595 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27172880;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27172881-27172946%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27172881-27172946&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0517961207233 0.0206300510126 0.639590453812 27212500 27212565 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27212499;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27172881-27172946%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27212500-27212565&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SMGDRKLELRRLMGLFIGAGGCLFWMPYK Same 578752 chr7:27172881-27172946+ 42350 42350 -273 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.484848484848 1.6032388664 -2.98327727273 0.9927 -2.54685909091 -0.436418181818 -0.0636325949313 0.279369466616 72750 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -7.19520454545 0.5491 -5.23355454545 -1.96165 -0.0463939592538 0.31260335034 69605 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000524368.1,ENST00000283921.4,ENST00000465941.1 AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 42176 501023 chr14:28766800-28767030+ NoOverlap chr14 28766800 28767030 + 2.24799736559 77 0.28968995451 1.59907792451 0.648919441084 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28766799;231;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28766800-28767030%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28766800-28767030&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0391427584905 0.0203287555439 0.517407251814 29236006 29236236 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29236005;231;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28766800-28767030%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29236006-29236236&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIVAIAASIAVSPASPRPLRDAPARRPALPPFGLLLLLL*LLLREEEEEEEAAGGGAGGGGGDQEVQLGARELHPRGGGCFFFLSFFFLFLFFFFSNS Same 502915 chr14:28766800-28767030+ 41403 41403 773 35 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.722943722944 0.677816901408 0.194035064935 0.4265 -0.124203896104 0.318238961039 0.0226883079418 0.446704633391 31515 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -7.88963636364 0.3333 -4.19289220779 -3.69674415584 -0.0044480479441 0.340254372059 37692 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.109618972639 chr16:86578724-86579761+ ENST00000313071.6 UTR5 not annotated putative regulatory region 42191 577706 chr7:27165089-27165175+ NoOverlap chr7 27165089 27165175 + 3.29017235287 29 0.853825936654 3.1130690803 0.177103272575 ENST00000343483.6,ENST00000396345.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27165088;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27165089-27165175%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27165089-27165175&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.218540620991 0.0202869661117 0.330115650843 27204708 27204794 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27204707;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27165089-27165175%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27204708-27204794&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FNAIRPAGGQAREGERTGRGLQPGAHVPAVRRRRRHGRLGVHVGVVVMVVVHR Same 578745 chr7:27165089-27165175+ 43182 43182 -991 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.793103448276 1.02352941176 -6.44903103448 0.9674 -8.36787931034 1.91884827586 -0.0986742363196 0.473691625354 73675 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -24.6668482759 0.8858 -31.8230931034 7.15624482759 -0.0391875082325 0.491492030346 64632 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000343483.6,ENST00000470747.4,ENST00000465941.1 AntiCDS,AntiCDSintron,AntiNCintron not annotated putative regulatory region 42217 477049 chr10:26593998-26594057+ NoOverlap chr10 26593998 26594057 + 4.29518992007 20 0.225192645151 1.10203006268 3.19315985739 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;26593997;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26593998-26594057%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A26593998-26594057&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0046452668334 0.0202088888906 0.651758270781 26882927 26882986 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;26882926;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26593998-26594057%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A26882927-26882986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQEHPGPAGPQVQPAPTPLVQSSWDTICSPATPLK Same 478942 chr10:26593998-26594057+ 42439 42439 -222 0 21625 26593998 26594236 Best 42217 42217;43025 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:26593998-26594236&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.164835164835 8.204445 0.4805 2.62876 5.575685 0.161488030369 0.783279963519 10815 9483 9483;10815 10.524895 0.1805 3.905535 6.61936 0.159536781046 0.655987007372 7590 Best 7590 7590;10662 0.955834219202 chr10:26566961-26567488+ 0.978646285068 chr10:26566961-26567488+ ENST00000412114.2 NC pseudogene amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein (APBB1IP) pseudogene (ENSG00000233261) 42274 527271 chr19:12207347-12207427+ NoOverlap chr19 12207347 12207427 + 2.72074071566 27 0.208499275196 -1.80475925118 4.52549996684 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12207346;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12207347-12207427%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12207347-12207427&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00741926109769 0.0200637792881 0.870158227721 12318162 12318242 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12318161;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12207347-12207427%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12318162-12318242&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSVAFEDVAVNFTQEEWALLDPWQKKLYRDVMLETYR Same 528717 chr19:12207347-12207427+ 37964 37964 4310 0 21547 12207347 12208769 41986 41986;42274 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12207347-12208769&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.506172839506 0.0 7.00449259259 0.3974 -5.40649259259 12.4109851852 0.313223194064 1.06793686953 5337 Best 5337 5337;14872 17.0353074074 0.5471 -10.4382703704 27.4735777778 1.03242282469 1.04092803738 590 Best 590 590;747 0.497684701975 chr19:12275956-12276082- 0.348740477375 chr19:9378962-9379088+ ENST00000415793.5,ENST00000426044.1 NC,NCintron pseudogene zinc finger protein pseudogene (ENSG00000234773) 42314 547263 chr21:8439041-8439109- NoOverlap chr21 8439041 8439109 - 1.82974348768 23 0.157918271352 0.152965213294 1.67677827439 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439040;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439041-8439109-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439041-8439109&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0346029089308 0.0198928479627 0.496782696069 155215 155283 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155214;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439041-8439109-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155215-155283&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTGPGGEEGTETPPDPPRRRREPPPRPPTPTSSGPRPGTAPR Same 548666 chr21:8439041-8439109- 40622 40622 1692 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.826086956522 1.27777777778 -1.19037826087 0.2649 -0.822982608696 -0.367395652174 0.000643115412074 0.29298103636 41193 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 1.43234782609 0.2084 0.919452173913 0.512895652174 -0.0109653029063 0.431345770336 41521 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.118839647948 chr11:32583888-32583929+ not annotated SSU-rRNA_Hsa 42315 475578 chr1:205456881-205456922- NoOverlap chr1 205456881 205456922 - 5.73225722568 14 0.497456103064 2.65805715322 3.07420007246 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;205456880;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205456881-205456922-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A205456881-205456922&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0284719636818 0.0198895970683 0.558525679724 205426009 205426050 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;205426008;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205456881-205456922-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A205426009-205426050&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PRPSGGAEGGVGRARRPRGWGAAKER Same 477464 chr1:205456881-205456922- 44031 44031 -1716 0 426 205429956 205457273 602 602;5870;20670;25343;28258;42315;54500 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:205429956-205457273&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.809523809524 0.615384615385 -1.88991428571 0.7008 -3.74297142857 1.85305714286 -0.019860525632 0.421991731599 54053 1075 1075;10557;16883;23930;42062;54053;60191 -4.00682857143 0.3022 -7.02034285714 3.01351428571 -0.021585347805 0.46857979449 49407 283 283;9691;10748;23486;28634;42041;49407 0.0 0.0 ENST00000629113.1,ENST00000442318.1 NC,AntiNC under investigation; now made coding Finds a 33aa single exon CDS within a 5' exon of LEMD1 in GENCODE [chr1:205441026-205440925], although this exon is part of lncRNA BLACAT1 in RefSeq. Transcriptomics data make it clear that the locus should indeed be considered an independent gene from LEMD1, with an indication of potential brain / neuronal specificity (e.g. SRR486241). The CDS was initially considered hard to appraise because of its small size, although the reading frame is conserved across vertebrates with only 3mer indels in the genomic alignments. Following the analytical work presented here, it was decided to convert this gene (i.e. BLACAT1) to protein-coding, and ENSG00000281406 appeared in GENCODEv31. 42317 524736 chr18:58255504-58255539+ NoOverlap chr18 58255504 58255539 + 5.95619160434 12 0.893030441749 2.41494992375 3.54124168058 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;58255503;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A58255504-58255539%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A58255504-58255539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0968271458677 0.0198870850334 0.591870430865 55922736 55922771 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;55922735;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A58255504-58255539%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A55922736-55922771&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPLGLFLLSVAPGAAVLTVWQMGHFFLEFVSLVCDFWQCR Same 526179 chr18:58255504-58255539+ 40072 40072 2245 0 369 58255504 58256765 513 513;552;42317 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:58255504-58256765&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.6 5.80805 0.9967 4.14324166667 1.66480833333 0.138206486627 0.369161042512 12425 538 538;751;12425 -6.1829 0.8995 -3.4837 -2.6992 -0.0455234825737 0.234209970678 69046 1184 1184;1291;69046 0.0 0.0 ENST00000256830.13,ENST00000431212.6,ENST00000585323.5 CDSintron,UTR5intron,NCintron coding exon(s) NEDD4L alternative first coding exon. This CDS was not subjected to further analysis as it was reclassified as coding once this work was completed. 42358 473876 chr1:121031096-121031134- NoOverlap chr1 121031096 121031134 - 6.23533074672 13 0.386935929715 3.34433078766 2.89099995907 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;121031095;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A121031096-121031134-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A121031096-121031134&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000326209696144 0.0196996096875 0.51584454964 149694451 149694489 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;149694450;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A121031096-121031134-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A149694451-149694489&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLEHGSSGPWEEMRPQKMNASGDLASFSSLYQPNSETSGK Same 475756 chr1:121031096-121031134- 46263 46263 -3905 0 5560 121029605 121037796 7747 7747;9994;42358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:121029605-121037796&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.461538461538 0.0 6.32677692308 0.558 0.112315384615 6.21446153846 0.0768651799596 0.767459665427 18701 3528 3528;4495;18701 7.89003846154 0.2176 0.964176923077 6.92586153846 0.066613171292 0.616321972312 15691 89 89;1964;15691 0.0992379220309 chr1:149016299-149016550+ 0.283971944033 chr1:149016299-149016550+ ENST00000612313.1 NCintron pseudogene phosphodiesterase 4D interacting protein (PDE4DIP) unprocessed pseudogene (ENSG00000275585) 42359 474043 chr1:149722916-149722954- NoOverlap chr1 149722916 149722954 - 6.23533074672 13 0.386935929715 3.34433078766 2.89099995907 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;149722915;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A149722916-149722954-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A149722916-149722954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000326209696144 0.0196996096875 0.51584454964 149694451 149694489 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;149694450;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A149722916-149722954-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A149694451-149694489&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLEHGSSGPWEEMRPQKMNASGDLASFSSLYQPNSETSGK Same 475924 chr1:149722916-149722954- 46264 46264 -3905 0 7026 149721425 149729612 9995 9995;14000;42359 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:149721425-149729612&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.461538461538 0.0 5.45509230769 0.573 -0.3601 5.81519230769 0.0597653222097 0.739723478978 21298 3737 3737;4607;21298 7.29010769231 0.2223 0.681746153846 6.60836153846 0.0591088569044 0.604889020621 17008 919 919;1895;17008 0.0966400706688 chr1:149016299-149016550+ 0.277968038783 chr1:149016299-149016550+ ENST00000609662.1,ENST00000613574.4 NC,NCintron pseudogene extension pseudogene of PDE4DIP extended (ENSG00000234232) 42396 547198 chr21:8397526-8397690- NoOverlap chr21 8397526 8397690 - 2.75681092631 55 0.180608002663 2.42602963801 0.330781288299 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397525;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397526-8397690-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397526-8397690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0387012220438 0.0195924472067 0.461691595435 157920 158085 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157919;166;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397526-8397690-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157920-158085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TDGRGPPSHLPRRPSQPSRSRSRRTAAVEMRPAAAGRRSGDGPPPTPPPAPPAHPRTR Same 548602 chr21:8397526-8397690- 42467 42467 -71 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.854545454545 1.01851851852 -1.35589272727 0.2406 -2.34415272727 0.98826 -0.0167777487524 0.494539119449 51887 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -4.28447272727 0.3412 -3.29316545455 -0.991307272727 -0.0174680549851 0.452391147376 46159 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.129239694272 chr3:9892915-9893377+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 42405 484853 chr11:64251531-64251566+ NoOverlap chr11 64251531 64251566 + 6.97589155535 12 0.467667404186 5.42991663329 1.54597492206 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64251530;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64251531-64251566%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64251531-64251566&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0329169389473 0.0195505921525 0.31965577596 64019003 64019038 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64019002;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64251531-64251566%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64019003-64019038&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGTDWRAGGH*RRGAGAGR Same 486800 chr11:64251531-64251566+ 46423 46423 -4018 4 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.861111111111 0.947368421053 -0.865225 0.4554 -3.53944166667 2.67421666667 -0.0158852329825 0.47473768922 51216 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 -4.18630833333 0.2977 -10.3434666667 6.15715833333 -0.0119399330222 0.581178076009 42119 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.204010399631 chr17:45121211-45121343- ENST00000279230.10 UTR5 under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 42415 495341 chr12:52413358-52413387- NoOverlap chr12 52413358 52413387 - 7.24359004796 10 0.61440451667 2.46277000904 4.78082003891 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52413357;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52413358-52413387-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52413358-52413387&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0365182370903 0.0195203397854 0.698925502314 52807142 52807171 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;52807141;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52413358-52413387-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A52807142-52807171&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MTLSLPSGHRLTEGVRAVSTCESMSWNGR Same 497339 chr12:52413358-52413387- 45226 45226 -2811 0 1140 52411742 52413387 1734 1734;10682;42415 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52411742-52413387&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.533333333333 0.47619047619 21.17966 0.8468 15.81896 5.3607 0.375740798795 0.487410538943 4324 30 30;1724;4324 21.4102 0.3462 16.36511 5.04509 0.204899320847 0.457602370914 6104 821 821;3341;6104 0.0 0.0 ENST00000548135.1 AntiNCintron pseudogene extension KRT90P 2 exons added 42418 479597 chr10:129845282-129845329+ NoOverlap chr10 129845282 129845329 + 4.24187495187 16 0.836655031662 0.145687505603 4.09618744627 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129845281;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129845282-129845329%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129845282-129845329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0383892608469 0.0195095842362 0.725604604096 131643546 131643593 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131643545;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129845282-129845329%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131643546-131643593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HRMVFEKHFDGNFLATTISVIGCLSIGHNR Same 481502 chr10:129845282-129845329+ 40776 40776 1642 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.395833333333 1.06666666667 -0.3405375 0.9858 -1.21878125 0.87824375 -0.0183250732121 0.354147811301 52980 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -7.1153 0.9306 -3.94314375 -3.17215625 -0.0449457575577 0.238843359408 68691 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000614150.1,ENST00000355311.9 NC,AntiCDSintron not annotated potentially spurious 42437 536865 chr2:219269630-219269665+ NoOverlap chr2 219269630 219269665 + 5.24225847423 12 0.792749421429 -0.454058293253 5.69631676748 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;219269629;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219269630-219269665%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A219269630-219269665&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00124813636223 0.0194348276411 0.849873684341 220134352 220134387 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;220134351;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219269630-219269665%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A220134352-220134387&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVLCPLPTQCECISVHVGQAGVQLAMPAGSSTAWNIGFSLMGR Same 538233 chr2:219269630-219269665+ 40932 40932 1505 0 220 219269630 219279492 274 274;812;10599;20617;42437;70571 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:219269630-219279492&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.533333333333 13.5145833333 0.9918 -2.63708333333 16.1516666667 0.751736974836 1.02304921803 1860 408 408;491;1561;1860;15870;51627 68.6028083333 0.9974 9.61835833333 58.98445 1.00498585872 1.00619858909 1034 1012 1012;1034;1527;1616;16190;55697 0.0 0.373304503 chr12:49269465-49269687+ ENST00000490341.2,ENST00000473885.5,ENST00000398989.2 CDSintron,NCintron,AntiUTR5intron pseudo-exon TUBA4B pseudo-exon 42449 479639 chr10:129869778-129869819+ NoOverlap chr10 129869778 129869819 + 5.5016070434 14 0.783801458327 3.69689282349 1.80471421991 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129869777;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129869778-129869819%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129869778-129869819&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.125080588606 0.0193787968771 0.394358223638 131668042 131668083 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131668041;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129869778-129869819%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131668042-131668083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASPSAAEAQSTHWEPALN*RC Same 481544 chr10:129869778-129869819+ 41274 41274 1175 2 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.595238095238 0.545454545455 2.74424285714 0.9558 -0.475135714286 3.21937857143 0.0657715666493 0.537195147775 20339 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -1.69489285714 0.9184 -4.14753571429 2.45264285714 0.00143670417891 0.449050958265 34654 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 42467 540174 chr2:132669972-132670067- NoOverlap chr2 132669972 132670067 - 2.92948441207 32 0.773278114748 1.85354368482 1.07594072726 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;132669971;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A132669972-132670067-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A132669972-132670067&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.146253677928 0.0193283505189 0.469839680209 133427545 133427640 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;133427544;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A132669972-132670067-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A133427545-133427640&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATTVVSAAAARAPAASAATAAAAGAASAAVASSDALALSRPR Same 541536 chr2:132669972-132670067- 46412 46412 -3945 0 268 132668677 132673137 349 349;4819;25599;29906;42467 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:132668677-132673137&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.760416666667 0.893023255814 -1.815590625 0.841 -2.27999375 0.464403125 -0.0490562357201 0.398717058527 70710 117 117;11448;18835;33618;70710 -2.118265625 0.3623 -2.20225 0.083984375 -0.00411636833229 0.4532967131 37490 183 183;28002;37490;38224;49163 0.0 0.0820684338031 chr2:219218125-219218673- ENST00000397463.2,ENST00000449209.1,ENST00000345008.6 UTR5,NC,UTR5intron coding exon(s) NCKAP5 alternative final exon 42519 481115 chr10:75401740-75401916- NoOverlap chr10 75401740 75401916 - 1.6117745648 59 0.869945028727 -0.334303344205 1.946077909 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75401739;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401740-75401916-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75401740-75401916&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0155837568291 0.0191750186387 0.683291254055 77161498 77161674 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77161497;177;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401740-75401916-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77161498-77161674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGTESPGSGGGGGAGRVTSP*PSNHLGLPFDWKAAKALISPLVQLLLK*VSSPEPRLDTQR Same 483029 chr10:75401740-75401916- 37590 37590 4929 31 3027 75401238 75417825 4228 4228;6685;19248;23964;26231;42519;58489;66465;71052;72621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75401238-75417825&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.638418079096 0.832288401254 -2.93859661017 0.9718 -3.67141525424 0.732818644068 -0.0348128447327 0.433839583634 63556 9680 9680;11699;11870;23869;27311;40902;43730;53944;63556;72593 -6.82112033898 0.8347 -9.48033728814 2.65921694915 0.0727102165765 0.604104205472 14750 8483 8483;11906;14750;22472;22714;29979;35309;42843;42916;72930 0.0 0.046480224304 chr16:2115378-2115625- ENST00000372524.4,ENST00000466942.2 UTR5,AntiNC not annotated putative regulatory region 42533 511813 chr16:54928795-54928854+ NoOverlap chr16 54928795 54928854 + 4.86601493135 20 0.419456015869 3.53542493731 1.33058999404 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54928794;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54928795-54928854%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54928795-54928854&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0306528142193 0.0191395503287 0.400260504289 54962707 54962766 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54962706;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54928795-54928854%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54962707-54962766&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGRGRSLVAGASPRRAARAGR Same 513454 chr16:54928795-54928854+ 43787 43787 -1254 0 496 54928752 54938880 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.883333333333 1.2 -3.39797 0.6027 -1.06445 -2.33352 -0.0157211919827 0.141126659585 51098 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -11.119585 0.31 -9.45246 -1.667125 -0.0285546317007 0.298238211052 55810 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.151141238186 chr5:3596106-3596381+ ENST00000557792.1 AntiNC not annotated putative regulatory region 42558 539839 chr2:110030907-110031002- NoOverlap chr2 110030907 110031002 - 1.74149054848 32 0.503126668956 -1.82200637832 3.5634969268 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110030906;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110030907-110031002-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110030907-110031002&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0501665088259 0.0190620537437 0.797086508605 110788484 110788579 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110788483;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110030907-110031002-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110788484-110788579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GIHVTAGGPCPLGHFCPVGTGVALPCPMGTFSG**V Same 541199 chr2:110030907-110031002- 44488 44488 -1930 2 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.635416666667 0.103225806452 7.168040625 0.7933 2.227 4.941040625 0.484282276429 0.830433202116 3242 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 30.47284375 0.7461 10.92900625 19.5438375 1.06485318159 1.01970683833 196 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 42572 523901 chr18:14242348-14242431+ NoOverlap chr18 14242348 14242431 + 3.7755142455 28 0.338067989842 1.90602141832 1.86949282718 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;14242347;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A14242348-14242431%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A14242348-14242431&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00736290493438 0.0189970755539 0.547448028955 14242347 14242430 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;14242346;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A14242348-14242431%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A14242347-14242430&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQEYKLELDERAMQAVEKLEEIHLQVSFLNQLSLSVMWFPLFHCK Same 525337 chr18:14242348-14242431+ 42405 42405 167 0 21727 14242348 14244664 Best 42572 42572;55455 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:14242348-14244664&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.321428571429 0.0 5.95023214286 0.7814 -4.93031428571 10.8805464286 0.620544922038 1.07371253555 2438 1858 1858;2438 12.1817678571 0.5487 -4.95601071429 17.1377785714 0.861008844703 1.02136076408 2273 Best 2273 2273;2544 0.914941653369 chr17:16761425-16761718+ 0.941783188 chr10:27017502-27017792- pseudogene ankyrin repeat domain 20 family, member A5, pseudogene (ENSG00000186481) 42632 534738 chr2:110346116-110346142+ NoOverlap chr2 110346116 110346142 + 7.31356671287 9 0.48720531014 -0.954144620233 8.2677113331 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110346115;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110346116-110346142%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110346116-110346142&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0138956503824 0.0188468771765 0.987485922719 111103693 111103719 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111103692;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110346116-110346142%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111103693-111103719&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSGAPQATLLSLMLLPPGLSSFEDHPCPPGHWCLGDQGAFFCPPGTFR Same 536090 chr2:110346116-110346142+ 41348 41348 1284 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.350649350649 8.60656666667 0.7807 -2.43583333333 11.0424 0.151861332678 0.981908631182 11453 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 37.5419333333 0.756 3.6537 33.8882333333 1.02950204449 1.02066394165 631 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 42668 589476 chr9:92141418-92141507+ NoOverlap chr9 92141418 92141507 + 2.0884499905 30 0.144162661173 1.82139332791 0.267056662589 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;92141417;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A92141418-92141507%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A92141418-92141507&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.025800164424 0.0187515921079 0.354391912669 94903700 94903789 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;94903699;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A92141418-92141507%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A94903700-94903789&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AWPPGDPAARPPRCPTRPGSGRCDFAPLCAPPRAPAAPPSPAR Same 590423 chr9:92141418-92141507+ 41285 41285 1383 0 21759 92141418 92141672 Best 42668 42668;44576;44948;45834 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:92141418-92141672&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.984020185029 -4.0148 0.3296 -0.133896666667 -3.88090333333 0.00274201991274 0.0670949753002 40112 17366 17366;40112;46286;47334 -8.22732 0.3314 -1.74026333333 -6.48705666667 -0.0280206000339 0.183923091774 55318 3112 3112;5366;55318;55885 0.755726772826 chr1:202193990-202194201+ 0.78080366599 chr1:202193990-202194201+ ENST00000367276.8 NC pseudogene leucine rich repeat containing G protein-coupled receptor 6 (LGR6) pseudogene (ENSG00000225511) 42798 547187 chr21:8396170-8396217- NoOverlap chr21 8396170 8396217 - 2.36434992892 16 0.209510185397 1.0198500338 1.34449989512 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8396169;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396170-8396217-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8396170-8396217&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0406322770351 0.0183614084713 0.393918633569 156563 156610 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156562;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396170-8396217-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156563-156610&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DALPRPSLPAGTLPLPDPPSSSPTTTPHATRPHRRRRATTTTTGTGPSTRPGPTNPEPR Same 548590 chr21:8396170-8396217- 42081 42081 717 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.770833333333 2.0 0.29609375 0.1946 -3.10300625 3.3991 0.0183238325456 0.572355135138 33259 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 2.92673125 0.2522 0.91008125 2.01665 0.00726669099705 0.446152663023 31932 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0 ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 42799 547280 chr21:8440389-8440436- NoOverlap chr21 8440389 8440436 - 2.36434992892 16 0.209510185397 1.0198500338 1.34449989512 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8440388;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440389-8440436-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8440389-8440436&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0406322770351 0.0183614084713 0.393918633569 156563 156610 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156562;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440389-8440436-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156563-156610&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DALPRPSLPAGTLPLPDPPSSSPTTTPHATRPHRRRRATTTTTTGTGPSTRPGPTNPEPR Same 548683 chr21:8440389-8440436- 42082 42082 717 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.770833333333 2.0 0.58851875 0.1898 -1.19993125 1.78845 0.0190475114669 0.431546297079 32982 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 11.41933125 0.2568 6.89321875 4.5261125 0.134582066924 0.534020435418 8848 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.187355930502 chr19:1043041-1043251+ not annotated SSU-rRNA_Hsa 42830 547303 chr21:8442295-8442372- NoOverlap chr21 8442295 8442372 - 1.44806538981 26 0.182510813365 0.585600027671 0.862465362136 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442294;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442295-8442372-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442295-8442372&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0398671359176 0.0182995372599 0.413171795978 158469 158546 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158468;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442295-8442372-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158469-158546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPPPGPTARPARGALGTVRPAPRPAR Same 548706 chr21:8442295-8442372- 40500 40500 2330 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.858974358974 1.0243902439 -0.375957692308 0.2506 -1.19720769231 0.82125 0.000670136375603 0.413317606687 41173 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -7.07817692308 0.329 -6.24797692308 -0.8302 -0.048054191655 0.375694695978 70526 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 42841 547159 chr21:8392609-8392656- NoOverlap chr21 8392609 8392656 - 2.26019378565 16 0.153189135576 -0.982368737459 3.24256252311 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8392608;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392609-8392656-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8392609-8392656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0373518526233 0.0182604028545 0.638976752378 152993 153040 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152992;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392609-8392656-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152993-153040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VERGEAPTRPDGRPGGLAR Same 548567 chr21:8392609-8392656- 42243 42243 598 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.895833333333 1.05263157895 2.45360625 0.2046 1.97045625 0.48315 0.0191813179569 0.318037530037 32932 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -1.53198125 0.1078 -0.02774375 -1.5042375 -0.0203563725727 0.306075755292 48373 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.465108197233 chr11:1258099-1258203+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 42842 547255 chr21:8436819-8436866- NoOverlap chr21 8436819 8436866 - 2.26019378565 16 0.153189135576 -0.982368737459 3.24256252311 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436818;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436819-8436866-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436819-8436866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0373518526233 0.0182604028545 0.638976752378 152993 153040 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152992;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436819-8436866-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152993-153040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VERGEAPTRPDGRPGGLAR Same 548658 chr21:8436819-8436866- 42244 42244 598 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.895833333333 1.05263157895 -1.722225 0.2288 -4.145725 2.4235 0.0140703246421 0.484613503084 35066 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -0.19581875 0.1899 -3.6261625 3.43034375 -0.0101057793993 0.506050854604 40982 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.15015988649 chr12:48996740-48998666- not annotated SSU-rRNA_Hsa 42877 509846 chr15:89335097-89335144- NoOverlap chr15 89335097 89335144 - 5.29083745182 16 0.545733196002 3.34844379127 1.94239366055 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;89335096;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89335097-89335144-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A89335097-89335144&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0566069880277 0.0181797111787 0.436695147916 89878328 89878375 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;89878327;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89335097-89335144-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A89878328-89878375&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PPFDRGRTRTCNLLIRSQTPYPLGHAAR Same 511581 chr15:89335097-89335144- 43842 43842 -965 0 569 89330211 89335145 867 867;1516;6244;11372;42877;43590;44649;44946 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:89330211-89335145&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 1.23076923077 1.26230625 0.9897 0.40649375 0.8558125 0.0196958693525 0.351087843027 32743 991 991;1902;3329;4879;5570;8149;31414;32743 1.26230625 0.3094 0.40649375 0.8558125 -0.00447520558105 0.399299697957 37713 1954 1954;9286;12402;21990;33671;37713;45376;71871 0.0 0.0 ENST00000569473.1 AntiNC under investigation POLG contains a series of NPRs in the first and second coding exon that are out of frame to the annotated CDS (the POLG CDS is conserved in vertebrates). These NPRs in combination find a prospective alternative CDS with a STOP codon conserved in therian mamamls - found precisely at the terminus of the most 3' NPR - although no ATG initiation codon has been identified. However, a potential non-ATG initiation codon [CTG] at chr15:89333809 corresponds well with the beginning of the NPR series, creating a predicted 261aa CDS that is conserved in therian mammals. We have identified additional support for the translation of this alternative CDS within the mass spectrometry datasets provided by Pandey et al, specifically peptides [AAAAQPJGHPDAJER] and [AAAAAAAAAAAAAAATAASAAASAJJGGR] in CD8 cells. However, at the present time there is no evidence to suggest how this alternative CDS may be transcribed and translated, and it is unclear how to construct a transcript model. 42934 529179 chr19:51692776-51692850+ NoOverlap chr19 51692776 51692850 + 2.96021603346 25 0.525019607843 -0.108143959045 3.0683599925 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51692775;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51692776-51692850%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51692776-51692850&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000920064401607 0.0180342203021 0.687014609199 52196029 52196103 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52196028;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51692776-51692850%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52196029-52196103&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWGLPGPPPHPWSSWSLSVCLSGLSTCRAPRAEVGGCIVEEDTQGDHYTAS Same 530638 chr19:51692776-51692850+ 44633 44633 -1699 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.613333333333 0.571428571429 -0.00948 0.9274 -0.606068 0.596588 -0.0014480820092 0.38935930118 42225 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 -9.178124 0.6423 -9.149088 -0.029036 -0.0470283709507 0.393721307585 69983 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.0685370065704 chr1:24169417-24169601- ENST00000362102.2,ENST00000602324.1 NC,AntiNC protein-coding gene protein-coding gene ENSG00000182310 42966 546351 chr21:8394898-8394936+ NoOverlap chr21 8394898 8394936 + 4.47013079432 13 0.163947626342 0.299853829237 4.17027696509 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8394897;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394898-8394936%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8394898-8394936&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0091857521472 0.0179379238762 0.701258294619 155287 155325 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155286;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394898-8394936%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155287-155325&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGSGGLGALLPAGARRPAPPRR Same 547765 chr21:8394898-8394936+ 45233 45233 -2267 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.923076923077 1.13961038961 5.0476 0.2678 3.94384615385 1.10375384615 0.0139827747893 0.334946870062 35097 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 2.98357692308 0.308 4.41705384615 -1.43347692308 -0.0140257823873 0.286460573674 43617 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.257902873483 chr22:19723854-19724464+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 42967 546411 chr21:8439113-8439151+ NoOverlap chr21 8439113 8439151 + 4.47013079432 13 0.163947626342 0.299853829237 4.17027696509 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439112;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439113-8439151%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439113-8439151&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0091857521472 0.0179379238762 0.701258294619 155287 155325 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155286;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439113-8439151%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155287-155325&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VWGGLGALLPAGARRPAPPRR Same 547824 chr21:8439113-8439151+ 45234 45234 -2267 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.923076923077 1.13961038961 4.03450769231 0.2768 5.67416923077 -1.63966153846 0.00868858563727 0.132384600988 37364 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 11.7404692308 0.3347 19.7427615385 -8.00229230769 0.00422584896079 0.0700353387273 33293 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.171719021418 chr12:132761618-132761798- not annotated LSU-rRNA_Hsa 43025 477050 chr10:26594102-26594236+ NoOverlap chr10 26594102 26594236 + 3.26444890085 45 0.182056068428 2.89312223461 0.371326666243 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;26594101;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26594102-26594236%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A26594102-26594236&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.032286002773 0.0176853205216 0.43911885128 26883031 26883165 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;26883030;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26594102-26594236%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A26883031-26883165&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGLPRPPDDFLLPQQPPQSPPRPLDDPELLLPPPDFMEAPQDFVPPPPAVAK Same 478943 chr10:26594102-26594236+ 42776 42776 249 0 21625 26593998 26594236 42217 42217;43025 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:26593998-26594236&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.718518518519 0.593841642229 7.00624444444 0.3529 5.25925555556 1.74698888889 0.184345068804 0.620858160232 9483 Best 9483 9483;10815 7.99821111111 0.1378 5.76293333333 2.23527777778 0.109621181516 0.595519792182 10662 7590 7590;10662 0.860926950081 chr10:26566961-26567488+ 1.07773604221 chr10:26566961-26567488+ ENST00000412114.2 NC pseudogene amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein (APBB1IP) pseudogene (ENSG00000233261) 43070 527729 chr19:28610631-28610771+ NoOverlap chr19 28610631 28610771 + 1.56232764176 47 0.130296787976 -0.560838273865 2.12316591562 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28610630;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28610631-28610771%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28610631-28610771&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0348020035189 0.0175598087272 0.682045065784 29101538 29101678 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29101537;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28610631-28610771%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29101538-29101678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MTVGVLTQMVGPWPRPVAYLSKQLDGVSKGWPPCLRALAATVLLGQEADKLTLGQNLNIKAPPCCGNTNEHQR Same 529176 chr19:28610631-28610771+ 38407 38407 4663 0 19357 28608133 28611285 36033 36033;38545;39010;41587;43070;45508;47044;48128 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28608133-28611285&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.503546099291 0.112082670906 -1.14980425532 0.0298 -1.39513191489 0.245327659574 0.0118484604585 0.42285758148 36006 26060 26060;29422;36006;38223;39249;43455;47313;48514 -1.14980425532 0.0093 -1.39513191489 0.245327659574 -0.0477943889855 0.504125701669 70401 27094 27094;34090;60003;61081;61427;61444;64226;70401 0.0 0.0 ENST00000587961.1,ENST00000585394.1 NCintron,AntiNCintron not annotated potentially spurious 43146 546544 chr21:26169669-26169713+ NoOverlap chr21 26169669 26169713 + 3.60008015633 15 0.635978739096 -2.91539999644 6.51548015277 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;26169668;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A26169669-26169713%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A26169669-26169713&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0725062064149 0.0173369111584 0.95458785406 27541987 27542031 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;27541986;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A26169669-26169713%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A27541987-27542031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPGKGAGREPRWRTETNAARPTAR Same 547960 chr21:26169669-26169713+ 46665 46665 -3519 0 1496 26169453 26170881 2228 2228;14589;18597;43146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:26169453-26170881&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.755555555556 0.824175824176 4.00467333333 0.8053 -5.47882 9.48349333333 0.209466942835 0.985284825175 8395 Best 8395 8395;15566;16161;55552 2.05613333333 0.3504 -10.9824066667 13.03854 0.17307870395 0.876781745339 7036 Best 7036 7036;7352;11231;16407 0.0 0.0 ENST00000455275.1,ENST00000346798.7,ENST00000359726.7,ENST00000474136.5 NCintron,AntiCDSintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 43154 519789 chr17:1714648-1714797- NoOverlap chr17 1714648 1714797 - 2.09757602453 50 0.934669413291 0.884490055442 1.21308596909 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;1714647;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1714648-1714797-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A1714648-1714797&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.11891744328 0.017300826246 0.568896030175 1617942 1618091 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;1617941;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A1714648-1714797-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A1617942-1618091&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FMRWNCGGGAWNLEQSSDMEGPADSLEFIPDVPGMRKRNAWHLRVLGKLPSHPAHTSLPSSLWSPARPSQPRPPCR Same 521196 chr17:1714648-1714797- 39245 39245 3909 0 960 1713893 1724692 1472 1472;3348;6953;15387;36265;37604;43154 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:1713893-1724692&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.58 0.499445061043 -3.872414 0.9663 -3.247898 -0.624516 -0.10438303631 0.299767374435 73726 5776 5776;16857;18965;26440;56587;71733;73726 -8.600104 0.5661 -10.641098 2.040994 -0.00617498017559 0.560881834211 38681 10479 10479;11209;21855;38681;45206;66911;67671 0.0 0.0899906845688 chr19:15174068-15174400- ENST00000334146.7 NCintron not annotated putative regulatory region 43166 511828 chr16:54938702-54938746+ NoOverlap chr16 54938702 54938746 + 5.18783317407 15 0.921414002696 3.64240659475 1.54542657932 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54938701;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54938702-54938746%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54938702-54938746&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.140048523554 0.0172573429406 0.375337467217 54972614 54972658 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54972613;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54938702-54938746%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54972614-54972658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAFICSEQTSGSQRSRLMDANVNVHLFNWIRPQDK Same 513469 chr16:54938702-54938746+ 42710 42710 456 0 496 54928752 54938880 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.644444444444 0.882352941176 -2.30319333333 0.992 -2.87726 0.574066666667 -0.0457599105294 0.324736938149 69542 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -10.56886 0.7428 -14.5966266667 4.02776666667 -0.0418034955886 0.486387455646 66544 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.0358874041337 chr2:98822432-98822746- ENST00000560487.1 NCintron not annotated putative regulatory region 43193 500535 chr13:113410385-113410417- NoOverlap chr13 113410385 113410417 - 6.41361813112 11 0.256592937847 1.21207273819 5.20154539293 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;113410384;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113410385-113410417-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A113410385-113410417&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0169161931489 0.0171853664935 0.773320343576 114064700 114064732 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;114064699;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A113410385-113410417-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A114064700-114064732&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VNVSSLAGLEGAPSASVVPSGVPGPAASESPGTR Same 502541 chr13:113410385-113410417- 45943 45943 -2750 0 100 113403390 113410417 120 120;186;577;628;905;2155;43193 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:113403390-113410417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.727272727273 0.692307692308 -1.51592727273 0.3397 -4.44299090909 2.92706363636 0.00639969487942 0.48835070253 38380 325 325;568;804;826;1027;2642;38380 1.85445454545 0.2472 -1.40855454545 3.26300909091 -0.0117940589586 0.457464856317 42035 110 110;511;615;1448;1864;2789;42035 0.0 0.0 coding exon(s) ADPRHL1 alternative final coding exon 43209 547296 chr21:8441747-8441911- NoOverlap chr21 8441747 8441911 - 2.68924545592 55 0.181187845495 2.40388002071 0.28536543521 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441746;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441747-8441911-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441747-8441911&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0366264383142 0.0171444168259 0.454859331862 157921 158085 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157920;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441747-8441911-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157921-158085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TDGRGPPSHLPRRAFPAVPEPVAAHRRGGNAPGGGRSPVGGRSPADPTPGPARPPPHPPEPAPSGEEEEGR Same 548699 chr21:8441747-8441911- 43543 43543 -334 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.854545454545 1.01162790698 0.783098181818 0.2402 0.508309090909 0.274789090909 0.00912828142324 0.464058106109 37162 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -4.49222363636 0.3494 -4.41031818182 -0.0819054545455 -0.0114001774636 0.490747936766 41785 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0984922537922 chr12:56599964-56600096- not annotated SSU-rRNA_Hsa 43246 547242 chr21:8436030-8436098- NoOverlap chr21 8436030 8436098 - 1.36877390354 23 0.167544723861 -0.855404392533 2.22417829607 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436029;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436030-8436098-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436030-8436098&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0476807700074 0.017027785452 0.572290504999 152204 152272 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152203;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436030-8436098-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152204-152272&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TNACPAGTTGPRSGARARRTGRRHAGRTGSPRR Same 548645 chr21:8436030-8436098- 40225 40225 3021 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.840579710145 1.39476813317 -0.173786956522 0.2606 -2.51433043478 2.34054347826 0.00453667895257 0.532201829547 39252 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 4.0274826087 0.2699 -1.84569565217 5.87317826087 0.120965887151 0.658762435982 9765 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.285175435699 chr1:16048972-16049245+ ENST00000613635.1 AntiNC not annotated SSU-rRNA_Hsa 43248 563913 chr5:37840229-37840285+ NoOverlap chr5 37840229 37840285 + 3.89285791391 19 0.669600414403 0.717321090008 3.1755368239 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;37840228;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37840229-37840285%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A37840229-37840285&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0371985262703 0.017024774719 0.643262766251 37840331 37840387 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;37840330;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37840229-37840285%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A37840331-37840387&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAPLPGLQGER*ERGDAAGLAPSPLR Same 564901 chr5:37840229-37840285+ 46300 46300 -3052 9 1098 37834655 37842122 1665 1665;3432;9737;17708;23431;43248;66339;67574 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:37834655-37842122&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.754385964912 0.886666666667 -2.98054210526 0.8623 -4.64699473684 1.66645263158 -0.041805186805 0.436740196233 67583 4518 4518;14736;23580;58453;64403;65427;67583;67906 -7.26 0.3865 -9.02857894737 1.76857894737 -0.0336853446401 0.441518069509 60370 5584 5584;29735;41849;43350;44494;45609;51811;60370 0.0 0.0 not annotated putative regulatory region 43266 547196 chr21:8397014-8397484- NoOverlap chr21 8397014 8397484 - 1.63705671061 157 0.183175907851 1.20041083616 0.436645874457 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397013;471;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397014-8397484-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397014-8397484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0163129819529 0.0169795595269 0.632496662253 157408 157878 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157407;471;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397014-8397484-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157408-157878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GKGGRVEGSGGTGGGKDPPGRRHGRTRRRVESSGRTARTPPVYLLTVSRPLELSLQSSFQLSLTVLVDYRSRAGI*P*MEFTTRFGLHSQATRLREDPGPARRGPLPASHRPRAGPRSEGLGPPTSGAGERVFRTPHVPRPAAGRGFGAGLFPVHSPLLR Same 548600 chr21:8397014-8397484- 61924 61924 -18658 78 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.673036093418 1.01266125179 -2.76579872611 0.2593 -3.33059745223 0.564798726115 -0.00943065264813 0.67357796157 46768 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -4.99064649682 0.3797 -4.87558343949 -0.115063057325 0.0393013355207 0.516004513354 21199 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0413136036965 chr12:56599964-56600096- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 43295 518078 chr17:48603947-48603982+ NoOverlap chr17 48603947 48603982 + 5.99589992563 12 0.767605096513 2.40733335416 3.58856657147 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48603946;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48603947-48603982%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48603947-48603982&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0803296008173 0.0168977292678 0.597407654493 46681309 46681344 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46681308;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48603947-48603982%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46681309-46681344&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFSVNCLFCVSLAVSSPSPASAEIPGPIETR Same 519479 chr17:48603947-48603982+ 41798 41798 1497 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.595041322314 3.803075 0.9732 0.731816666667 3.07125833333 0.0758702136041 0.500496858014 18830 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 4.35499166667 0.3735 2.49370833333 1.86128333333 0.0156843058743 0.405401946106 28480 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000466037.6,ENST00000490419.1,ENST00000225648.3,ENST00000552000.2 NC,AntiNC,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 43354 479933 chr10:8054487-8054525- NoOverlap chr10 8054487 8054525 - 5.53478455544 13 0.746983115305 1.83245378503 3.7023307704 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8054486;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8054487-8054525-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8054487-8054525&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0696908084899 0.0166960929299 0.630330852742 8096450 8096488 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8096449;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8054487-8054525-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8096450-8096488&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPAPPPAPPLTGKGRR Same 481841 chr10:8054487-8054525- 42870 42870 484 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.769230769231 0.78 1.63581538462 0.8067 -4.70518461538 6.341 0.0404618440322 0.785168586337 25435 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 1.29296923077 0.3914 -8.44457692308 9.73754615385 0.0893655871317 0.740933691031 12621 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 ENST00000481743.1 AntiNCintron not annotated putative regulatory region 43380 547245 chr21:8436182-8436220- NoOverlap chr21 8436182 8436220 - 3.3495077379 13 0.169700277597 1.43436925228 1.91513848563 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436181;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436182-8436220-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436182-8436220&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0209297175525 0.0165970949367 0.426599173112 152356 152394 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152355;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436182-8436220-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152356-152394&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DRGRGPGPGPTPRPGER Same 548648 chr21:8436182-8436220- 44747 44747 -1367 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.923076923077 0.652173913043 3.86784615385 0.2582 -0.0263 3.89414615385 0.0173645001742 0.583555860559 33672 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 6.79562307692 0.1803 3.25892307692 3.5367 0.0191860535752 0.478287259315 27279 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.45316358689 chr1:16048972-16049245+ not annotated SSU-rRNA_Hsa 43411 547209 chr21:8398150-8398617- NoOverlap chr21 8398150 8398617 - 1.76672501084 156 0.182453592032 1.57600129969 0.190723711147 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398149;468;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398150-8398617-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398150-8398617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0258767883314 0.0165215765916 0.598032018761 158553 159020 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158552;468;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398150-8398617-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158553-159020&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCVGSARAPAILRETSEGTSY*MVRLVFRPYTQVGRPICTSGPLRTSTRVSSGFALPRHSSPSFGS*HVRSCSTSPARRARRAGGAPSADWRGLGIPPRPASAPAFTFIAPRRLSCEPPTRARVRLLGPCFKTGRVGSRRRRRPRALAPPSPSSGDARVAPR Same 548611 chr21:8398150-8398617- 64031 64031 -20620 63 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.673076923077 1.13804004215 -1.63962307692 0.266 -1.44098717949 -0.198635897436 -0.00287088006857 0.622454212619 42981 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -4.5142974359 0.2942 -3.79899807692 -0.715299358974 -0.00696289521931 0.499136971332 39131 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.125707974187 chr12:56600201-56600490- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 43412 547305 chr21:8442379-8442846- NoOverlap chr21 8442379 8442846 - 1.76672501084 156 0.182453592032 1.57600129969 0.190723711147 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442378;468;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442379-8442846-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442379-8442846&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0258767883314 0.0165215765916 0.598032018761 158553 159020 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158552;468;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442379-8442846-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158553-159020&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GCVGSARAPAILRETSEGTSY*MVRLVFRPYTQVGRPICTSGPLRTSTRVSSGFALPRHSSPSFGS*HVRSCSTSPARRARRAGGAPSADWRGLGIPPRPASAPAFTFIAPRRLSCEPPTRARVRLLGPCFKTGRVGSRRRRRPRALAPPSPSSGDARVAPR Same 548708 chr21:8442379-8442846- 64032 64032 -20620 63 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.673076923077 1.13804004215 -1.59038012821 0.2706 -1.24725128205 -0.343128846154 -0.00587560033469 0.61264069798 44641 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -4.09130064103 0.3056 -3.86847435897 -0.222826282051 0.0169814341874 0.518453733306 28031 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 43446 549359 chr22:50730831-50730905+ NoOverlap chr22 50730831 50730905 + 3.60651608944 25 0.618064850843 2.15957597792 1.44694011152 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50730830;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50730831-50730905%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50730831-50730905&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0789048486013 0.0164510990874 0.467713134805 51169259 51169333 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51169258;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50730831-50730905%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51169259-51169333&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPVAATPWRDAPRAR*SPRRWSGWRGWGRARGAQGGPSASRPPPSSSRPASPSR Same 550709 chr22:50730831-50730905+ 46521 46521 -3075 8 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.84 1.08093126386 -4.034916 0.7907 -3.7432 -0.291716 -0.0477477768227 0.298478115094 70313 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -23.040216 0.7795 -23.715384 0.675168 -0.0266129549041 0.300825220474 54016 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.244188491408 chr19:50661965-50662682- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 43454 537371 chr2:240568386-240568559+ NoOverlap chr2 240568386 240568559 + 2.6436069448 58 0.253432885297 1.73354830252 0.910058642272 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;240568385;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240568386-240568559%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A240568386-240568559&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0329102778777 0.0164190461915 0.548155349702 241507803 241507976 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;241507802;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240568386-240568559%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A241507803-241507976&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPAPLAPGPPRPAPRPRAPAPRTAPPAAAERSPSGAAHGAGPGRAAPGATSCCARAPPPPPPGAPRPRPGAAAAHGFHLVPAAMAAQCCCR Same 538742 chr2:240568386-240568559+ 43137 43137 317 0 187 240560378 240572566 225 225;4611;43454;53343;54932;58666;60196 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:240560378-240572566&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.913793103448 1.14180537772 -3.60881034483 0.4194 -5.56585172414 1.95704137931 -0.0346563672723 0.531750691595 63450 635 635;2542;29313;56709;59851;60661;63450 -2.9424637931 0.367 -5.08821896552 2.14575517241 0.0497970335615 0.594159568373 18782 1672 1672;2162;18782;46446;66739;70450;73682 0.0 0.329306686204 chr17:8797360-8799120- ENST00000451363.5,ENST00000418708.3,ENST00000418505.3 UTR5intron,AntiUTR5intron,AntiNCintron coding exon(s) RNPEPL1 extended 5' 43479 482348 chr10:117541393-117541419- NoOverlap chr10 117541393 117541419 - 7.94803325335 9 0.917019743479 5.85543340031 2.09259985305 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117541392;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117541393-117541419-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117541393-117541419&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.10511732494 0.0163564169189 0.33111448577 119300904 119300930 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119300903;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117541393-117541419-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119300904-119300930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGIIMITSPGCWR Same 484275 chr10:117541393-117541419- 42354 42354 1125 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.385714285714 0.986777777778 0.9662 -1.32291111111 2.30968888889 -0.038845373949 0.412422525312 65896 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -4.04961111111 0.6422 -6.29262222222 2.24301111111 -0.0425135331541 0.39840727502 67032 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000440007.5 NCintron not annotated putative regulatory region 43490 546278 chr21:8218495-8218668+ NoOverlap chr21 8218495 8218668 + 2.36813447258 58 0.20536249385 1.06778592969 1.30034854289 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8218494;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8218495-8218668%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8218495-8218668&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0269457379264 0.0163297403956 0.600405790495 117970 118143 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;117969;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8218495-8218668%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A117970-118143&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTAGSDIWCMCLAEEPMGRSYHLWDYD*TPLSQNPAQAERYGSAAEPRLASDSRSPACPRRRAAPPSTRPAR Same 547691 chr21:8218495-8218668+ 41127 41127 2363 23 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.64367816092 0.888888888889 0.331467241379 0.0809 -0.652689655172 0.984156896552 0.0142821694484 0.526852927434 34994 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -0.99815862069 0.0783 -1.69239482759 0.694236206897 -0.0456232639707 0.536008655315 69104 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 43491 546450 chr21:8445765-8445938+ NoOverlap chr21 8445765 8445938 + 2.36813447258 58 0.20536249385 1.06778592969 1.30034854289 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8445764;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445765-8445938%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8445765-8445938&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0269457379264 0.0163297403956 0.600405790495 117970 118143 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;117969;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445765-8445938%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A117970-118143&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTAGSDIWCMCLAEEPMGRSYHLWDYD*TPLSQNPAQAERYGSAAEPRLASDSRSPACPRRRAAPPSTRPAR Same 547863 chr21:8445765-8445938+ 41128 41128 2363 23 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.64367816092 0.888888888889 0.331467241379 0.0809 -0.652689655172 0.984156896552 0.0142821694484 0.526852927434 34995 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -0.808313793103 0.0825 -1.50452413793 0.696210344828 -0.0441779260354 0.536550690444 68216 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.378193511716 chr2:27137091-27138329- not annotated LSU-rRNA_Hsa 43549 548775 chr22:39496763-39496789+ NoOverlap chr22 39496763 39496789 + 7.39235560099 9 0.455442808338 -0.566778130001 7.95913373099 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;39496762;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A39496763-39496789%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A39496763-39496789&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0150147430615 0.0161928351446 0.970293849355 39892768 39892794 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;39892767;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A39496763-39496789%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A39892768-39892794&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DQGLQYPSHCAALSPSGRAR Same 550146 chr22:39496763-39496789+ 41707 41707 1842 0 565 39496763 39504446 860 860;43549 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:39496763-39504446&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.0 6.25146666667 0.5542 -7.10395555556 13.3554222222 0.103253473611 1.03252356576 15501 1072 1072;15501 6.25146666667 0.1732 -7.10395555556 13.3554222222 0.0401615652811 0.827932505004 21001 1394 1394;21001 0.0 0.0 protein-coding gene protein-coding gene ENSG00000285025 43568 588640 chr9:23821850-23821924+ NoOverlap chr9 23821850 23821924 + 4.1388240099 25 0.497814602884 3.27004792809 0.8687760818 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23821849;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821850-23821924%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23821850-23821924&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0672199637246 0.0161541729566 0.387328381082 23821848 23821922 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23821847;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821850-23821924%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23821848-23821922&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPGAAVPPFVAGREGGACLEERQEAGPAASSRRRGR Same 589586 chr9:23821850-23821924+ 43644 43644 -76 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 1.15532734275 -6.372232 0.6931 -4.421296 -1.950936 0.00570217985624 0.183446721136 38733 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -8.60058 0.3277 -7.161696 -1.438884 -0.0474855689266 0.341610409167 70229 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000380117.5,ENST00000462649.1 AntiUTR5intron,AntiNCintron not annotated putative regulatory region 43573 547251 chr21:8436399-8436530- NoOverlap chr21 8436399 8436530 - 2.75670225512 44 0.167084902585 1.90635909055 0.850343164565 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436398;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436399-8436530-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436399-8436530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0253443425894 0.0161414903162 0.500255369115 152573 152704 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152572;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436399-8436530-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152573-152704&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARAAGARGRRRGGDGAPPAPRGGPDVRAASERRTAVPGPGTVAPCGR Same 548654 chr21:8436399-8436530- 42061 42061 1512 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.901515151515 1.24102564103 -1.03173409091 0.2705 0.376515909091 -1.40825 -0.0221830724123 0.271898829866 55611 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 0.889134090909 0.2477 2.21166363636 -1.32252954545 -0.00180583030969 0.434981463302 36263 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.187744823362 chr12:48996740-48998666- not annotated SSU-rRNA_Hsa 43590 509845 chr15:89335071-89335145- NoOverlap chr15 89335071 89335145 - 3.38673606753 25 0.539872129397 1.19978402972 2.18695203781 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;89335070;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89335071-89335145-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A89335071-89335145&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.029615715868 0.0160883883866 0.568942868266 89878302 89878376 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;89878301;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89335071-89335145-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A89878302-89878376&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIITSLRPRQDSNLQSSDPKSDALSIRPRGPSVVTVS Same 511580 chr15:89335071-89335145- 45439 45439 -1849 0 569 89330211 89335145 867 867;1516;6244;11372;42877;43590;44649;44946 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:89330211-89335145&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.613333333333 1.31578947368 1.11134 0.9856 -4.188184 5.299524 0.215980041312 0.808434609323 8149 991 991;1902;3329;4879;5570;8149;31414;32743 1.11134 0.3081 -4.188184 5.299524 0.0915028534722 0.647510049362 12402 1954 1954;9286;12402;21990;33671;37713;45376;71871 0.0 0.0 ENST00000569473.1 AntiNC under investigation POLG contains a series of NPRs in the first and second coding exon that are out of frame to the annotated CDS (the POLG CDS is conserved in vertebrates). These NPRs in combination find a prospective alternative CDS with a STOP codon conserved in therian mamamls - found precisely at the terminus of the most 3' NPR - although no ATG initiation codon has been identified. However, a potential non-ATG initiation codon [CTG] at chr15:89333809 corresponds well with the beginning of the NPR series, creating a predicted 261aa CDS that is conserved in therian mammals. We have identified additional support for the translation of this alternative CDS within the mass spectrometry datasets provided by Pandey et al, specifically peptides [AAAAQPJGHPDAJER] and [AAAAAAAAAAAAAAATAASAAASAJJGGR] in CD8 cells. However, at the present time there is no evidence to suggest how this alternative CDS may be transcribed and translated, and it is unclear how to construct a transcript model. 43654 581265 chr7:65770456-65770629- NoOverlap chr7 65770456 65770629 - 1.82848616715 58 0.216775452969 -0.79954995968 2.62803612683 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;65770455;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A65770456-65770629-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A65770456-65770629&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0116708829252 0.0159615745098 0.77229883194 65235443 65235616 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;65235442;174;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A65770456-65770629-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A65235443-65235616&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPRSKGLTLLEQALRTYWLAPGRHERRVAQKLLNGLSKYQPAPAAALAAHSPQLSLGMCTPQHFPQPCSGDLESVPHRPVPFVLGR Same 582219 chr7:65770456-65770629- 35742 35742 7912 0 22043 65770455 65770837 Best 43654 43654;46017;49173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:65770455-65770837&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.67816091954 0.600517687662 5.23908103448 0.6458 -2.58565862069 7.82473965517 0.658098030991 1.05930286969 2266 Best 2266 2266;10897;37942 6.29485344828 0.2797 -3.41308793103 9.70794137931 0.447158910428 0.900011524332 3745 Best 3745 3745;9173;72444 0.828244864028 chr7:56116021-56116314- 0.778719857755 chr7:56116021-56116314- ENST00000633579.1 NC not annotated putative regulatory region 43662 547252 chr21:8436557-8436619- NoOverlap chr21 8436557 8436619 - 2.6958905352 21 0.159161771064 -0.143147596291 2.83903813149 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436556;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436557-8436619-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436557-8436619&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0203852307837 0.0159329677535 0.627028534659 152731 152793 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152730;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436557-8436619-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152731-152793&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPAPQTRDASSSRPPARRRTARPAPGGR Same 548655 chr21:8436557-8436619- 42577 42577 1085 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.84126984127 1.44827586207 -0.233995238095 0.2377 -2.59101428571 2.35701904762 0.00876248935268 0.519252291663 37326 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -0.106461904762 0.19 -3.17419047619 3.06772857143 -0.00756915585681 0.526229365221 39487 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.232927016262 chr16:2214138-2214777- not annotated SSU-rRNA_Hsa 43702 501020 chr14:28766575-28766604+ NoOverlap chr14 28766575 28766604 + 3.36338996887 10 0.224283207446 2.08180997372 1.28157999516 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28766574;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28766575-28766604%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28766575-28766604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0317971705313 0.0158262244579 0.318286026556 29235781 29235810 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29235780;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28766575-28766604%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29235781-29235810&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSARPRGPRPAERGR None NA NA 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.833333333333 0.952380952381 -5.76599 0.5963 -2.14964 -3.61635 0.0266435212793 0.0809970540792 29996 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -8.6375 0.3965 -3.34549 -5.29201 0.000761847576865 0.140310045249 34980 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.0 ENST00000313071.6 UTR5 not annotated putative regulatory region 43823 592006 chr9:63124158-63124298- NoOverlap chr9 63124158 63124298 - 1.66687448798 47 0.144995446643 -1.16180635386 2.82868084185 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;63124157;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A63124158-63124298-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A63124158-63124298&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.028897783969 0.0154706482393 0.77335697889 67029130 67029270 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;67029129;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A63124158-63124298-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A67029130-67029270&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FVFLQLPIVDKIRTIAQAVYGAKDIELCPEAQVKIDRYTQQVKVVLLGEK Same 592956 chr9:63124158-63124298- 37528 37528 6295 0 20834 63121682 63124298 39917 39917;43823 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:63121682-63124298&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.446808510638 0.286004056795 4.61268723404 0.5396 -1.89497659574 6.50766382979 0.388912484304 0.996881138845 4138 1006 1006;4138 24.4915021277 0.7805 0.168374468085 24.3231276596 1.02656931093 1.0403683908 670 Best 670 670;1852 0.791605445328 chr6:151034493-151034600+ 0.683493665136 chr6:151034493-151034600+ ENST00000315293.6 NC pseudogene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like (MTHFD1L) pseudogene (ENSG00000182021) 43843 546410 chr21:8438987-8439037+ NoOverlap chr21 8438987 8439037 + 4.01514710574 17 0.163446564252 2.33671181912 1.67843528662 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8438986;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8438987-8439037%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8438987-8439037&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00953970137455 0.0154084072947 0.425606972372 155161 155211 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155160;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8438987-8439037%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155161-155211&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSWGRRAAGSGPRPRPR Same 547823 chr21:8438987-8439037+ 44743 44743 -900 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.882352941176 1.04938271605 -4.35928823529 0.1873 1.91716470588 -6.27645294118 0.0304845465876 -0.01841781978 28495 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -4.12650588235 0.2313 3.89912352941 -8.02562941176 -0.00941726552644 0.0995674173611 40572 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 not annotated LSU-rRNA_Hsa 43863 546363 chr21:8396933-8397523+ NoOverlap chr21 8396933 8397523 + 1.38110407899 197 0.182977747776 1.24236546918 0.138738609813 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8396932;591;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396933-8397523%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8396933-8397523&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0237576232294 0.0153313159978 0.680029763383 157327 157917 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157326;591;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396933-8397523%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157327-157917&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DATSDQTWRPAEFKHISQRRKRN*PGFPQ*RRVNREEPSAESPPRGGARDMWRTEDPLPGAARGGPKSF*SRPSPWTV*GR*RPPARRARVFPESGCLGMQPKAGGKLHLRLNTGTRPIVNKYRKGKLKRTLKREFKRA*NR*EVNGWGPRSPPGGFNPAAGPAVSAARRIFPAPRSSRPLHPPSLPPPPLLLLPGGGGLR Different 547776 chr21:8396921-8397523+ 32731 32731 11132 139 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.654822335025 0.978685897436 -3.75663908629 0.257 -2.77889847716 -0.977740609137 -0.0546161001016 0.687091833861 71920 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -7.44926548223 0.3784 -7.50299340102 0.0537279187817 0.018733742749 0.454444210465 27424 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0675733230462 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 43962 498381 chr13:51452409-51452513+ NoOverlap chr13 51452409 51452513 + 2.17539712627 35 0.36688705054 -0.723808555837 2.89920568211 ENST00000311234.8,ENST00000398119.6,ENST00000442263.4,ENST00000483288.5,ENST00000485178.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51452408;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51452409-51452513%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51452409-51452513&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0036266379333 0.015049700224 0.733255359956 52026545 52026649 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;52026544;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51452409-51452513%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A52026545-52026649&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPGSVSRYLHEGLYRAFGRVQVGGAQMAALVHRGRRVYQEQ Same 500395 chr13:51452409-51452513+ 40512 40512 3450 0 1692 51451954 51453308 2509 2509;31159;43962;47923;61724;62277 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51451954-51453308&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.580952380952 0.686274509804 0.393391428571 0.814 -2.23951428571 2.63290571429 0.062957376875 0.633152344035 20772 13006 13006;20772;28117;30456;57539;72100 -11.4222571429 0.8999 -15.1118571429 3.6896 -0.0215949218173 0.57366719284 49423 8845 8845;20580;21846;25121;49423;71224 0.0 0.0527486573086 chr12:57737079-57738246- ENST00000593672.5,ENST00000311234.8,ENST00000469430.5 NC,AntiCDS,AntiNC not annotated putative regulatory region 44003 584634 chr8:76535588-76535635+ NoOverlap chr8 76535588 76535635 + 4.91381876962 16 0.900125886931 3.84896248206 1.06485628756 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;76535587;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A76535588-76535635%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A76535588-76535635&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.147730519987 0.0149075302096 0.327346282447 77447823 77447870 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;77447822;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A76535588-76535635%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A77447823-77447870&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQQMSVSVK*MKWDQAEGAAV Same 585565 chr8:76535588-76535635+ 42938 42938 1065 7 1477 76526118 76535635 2199 2199;17625;44003 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:76526118-76535635&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.520833333333 0.421052631579 3.55150625 0.9996 3.24649375 0.3050125 0.0879030948459 0.300772011042 17282 5647 5647;11909;17282 -0.4758875 0.7502 -3.10463125 2.62874375 0.0309834645054 0.472331933116 23455 8140 8140;11951;23455 0.0 0.0 ENST00000522961.1 AntiNCintron not annotated putative regulatory region 44007 515953 chr17:2401712-2401762+ NoOverlap chr17 2401712 2401762 + 4.42145306573 17 0.956603341726 1.52064110952 2.90081195621 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2401711;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401712-2401762%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2401712-2401762&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0846065266022 0.0148955244344 0.583109673994 2305006 2305056 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2305005;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2401712-2401762%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2305006-2305056&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPMGGQDNTAWSSSTWTPR Same 517329 chr17:2401712-2401762+ 47611 47611 -3604 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.529411764706 -1.89308235294 0.9931 -1.22495882353 -0.668123529412 -0.0458948559225 0.239719588692 69607 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -5.94676470588 0.7366 -7.57597058824 1.62920588235 -0.0286659593139 0.42812021437 55902 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 not annotated putative regulatory region 44019 546261 chr21:8215916-8215978+ NoOverlap chr21 8215916 8215978 + 4.07315719128 21 0.384589841125 1.57815244226 2.49500474901 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8215915;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215916-8215978%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8215916-8215978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00964502068245 0.014847362543 0.571230793027 115381 115443 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;115380;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215916-8215978%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A115381-115443&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ECVTTHLPNQLALKMDGAGASGPYPAVAGSREWTGAAGAAR Same 547674 chr21:8215916-8215978+ 43839 43839 180 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.698412698413 1.05 3.02305238095 0.257 0.88829047619 2.13476190476 0.0204476653536 0.505141742088 32427 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 0.087080952381 0.1968 -2.47844285714 2.56552380952 -0.00912149827585 0.504983247832 40395 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.320507533154 chr3:9840698-9840805- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 44054 490587 chr12:7621548-7621604+ NoOverlap chr12 7621548 7621604 + 3.57457896675 19 0.285780599358 -1.89756307476 5.47214204151 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;7621547;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7621548-7621604%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A7621548-7621604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00383914868357 0.0147640527515 0.901200350915 7774144 7774200 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;7774143;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7621548-7621604%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A7774144-7774200&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHLILYQCFFLIFSLTEVYILILFRFRRVSHVVTYSGK Same 492563 chr12:7621548-7621604+ 38886 38886 5168 0 1000 7620539 7637633 1528 1528;3369;23912;30341;31797;32931;38172;38567;44054;46877;50926 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:7620539-7637633&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.245614035088 0.0 -1.93388421053 0.1021 -5.38868947368 3.45480526316 0.0221279137094 0.593952456229 31757 27370 27370;27482;29856;29976;30397;31757;32126;32399;32690;35677;37405 53.5719052632 0.704 10.7322263158 42.8396789474 1.00376341761 1.01996366173 1056 310 310;676;714;1056;1511;1634;1765;1772;2213;2416;4434 0.0 0.776992585855 chrM:5904-7445+ pseudogene mitochondrial protein pseudogene region (ENSG00000284591) 44102 547247 chr21:8436245-8436292- NoOverlap chr21 8436245 8436292 - 3.28702498414 16 0.171938658732 1.73850625753 1.5485187266 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436244;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436245-8436292-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436245-8436292&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0162323666556 0.0146447000753 0.407968213247 152419 152466 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152418;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436245-8436292-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152419-152466&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQGWHTPHDGQGRADRGRPARPPPPGTGDR Same 548650 chr21:8436245-8436292- 44718 44718 -616 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.854166666667 1.02857142857 1.5082375 0.2873 -0.40216875 1.91040625 0.00674299422186 0.441916783069 38238 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 2.88240625 0.2456 0.5790625 2.30334375 0.00796089253572 0.458125179108 31605 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.260356433334 chr12:48996740-48998666- not annotated SSU-rRNA_Hsa 44113 551498 chr3:14810650-14810739+ NoOverlap chr3 14810650 14810739 + 1.773593313 30 0.158906436764 0.951783367991 0.821809945007 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;14810649;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A14810650-14810739%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A14810650-14810739&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0273096791202 0.0145885352872 0.428977488455 14852157 14852246 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;14852156;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A14810650-14810739%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A14852157-14852246&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APARRPRPGGSRLAPPLPCAPRGVRGAPGPGGR Same 552435 chr3:14810650-14810739+ 42040 42040 2073 0 175 14810490 14819071 211 211;30409;44113;45247 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:14810490-14819071&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.9 1.0989010989 -2.83812 0.3103 -5.07030333333 2.23218333333 -0.0169660227427 0.539393120454 52016 440 440;41521;52016;56426 -7.47271 0.1953 -10.3091533333 2.83644333333 -0.0501826741329 0.543478833299 71416 893 893;26665;62854;71416 0.0 0.252335987939 chr12:49049682-49050790- ENST00000566553.1 AntiNCintron coding exon(s) FGD5 alternative 5' CDS 44132 547160 chr21:8392611-8392643- NoOverlap chr21 8392611 8392643 - 3.28813645007 11 0.155755772419 -0.202045437965 3.49018188803 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8392610;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392611-8392643-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8392611-8392643&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.027397966956 0.0145409532327 0.610278248339 152995 153027 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152994;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392611-8392643-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152995-153027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAARPRRGRTAGRGASR Same 548568 chr21:8392611-8392643- 45861 45861 -1729 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.939393939394 0.9625 5.90556363636 0.1935 -1.27801818182 7.18358181818 0.0372840956217 0.816907492372 26348 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 6.98252727273 0.0938 1.20696363636 5.77556363636 0.015999139926 0.55217015598 28375 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.59668167198 chr11:1258099-1258203+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 44133 547256 chr21:8436821-8436853- NoOverlap chr21 8436821 8436853 - 3.28813645007 11 0.155755772419 -0.202045437965 3.49018188803 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436820;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436821-8436853-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436821-8436853&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.027397966956 0.0145409532327 0.610278248339 152995 153027 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152994;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436821-8436853-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152995-153027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAARPRRGRTAGRGASR Same 548659 chr21:8436821-8436853- 45862 45862 -1729 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.939393939394 0.9625 2.90614545455 0.1891 0.00557272727273 2.90057272727 0.0226127474952 0.477528812448 31545 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 5.31421818182 0.1639 -1.88039090909 7.19460909091 0.0174165181271 0.614988764582 27888 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.138033914787 chr12:48996740-48998666- not annotated SSU-rRNA_Hsa 44139 488616 chr11:66728310-66728393- NoOverlap chr11 66728310 66728393 - 3.88307147633 28 0.362662263349 2.48729283256 1.39577864377 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;66728309;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66728310-66728393-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A66728310-66728393&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0153637285746 0.0145288223571 0.482449532465 66495781 66495864 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;66495780;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66728310-66728393-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A66495781-66495864&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QGEAIVLLPRRRSPAARARAPPPRAPPPPAPRAPRAACAP Same 490604 chr11:66728310-66728393- 44367 44367 -228 0 533 66718423 66728928 806 806;4911;26982;44139;59450;60343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:66718423-66728928&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.952380952381 1.4358974359 5.96192857143 0.3771 3.97022857143 1.9917 0.0647812739096 0.546445073848 20471 593 593;16712;20471;28103;45869;62074 7.98004642857 0.2435 4.14674642857 3.8333 0.168786724329 0.597988528965 7192 1083 1083;7192;12271;30758;47247;67889 0.0 0.0 ENST00000527010.1 UTR5intron coding exon(s) SPTBN2 alternative first coding exon. 44155 529169 chr19:51689064-51689132+ NoOverlap chr19 51689064 51689132 + 3.50078258437 23 0.318764284601 0.216091233751 3.28469135062 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51689063;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51689064-51689132%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51689064-51689132&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00214583249041 0.0144730411669 0.695411790375 52192317 52192385 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52192316;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51689064-51689132%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52192317-52192385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GKPGRSETGRGGGRASGSAGPAASRPLLSLPSSASGFSGPASPSR Same 530628 chr19:51689064-51689132+ 41735 41735 2420 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.840579710145 0.942857142857 1.21317826087 0.487 -1.99473478261 3.20791304348 -0.00929102152816 0.61604752613 46677 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 0.5331 0.239 -4.26662608696 4.79972608696 0.0364989600391 0.613669356984 21901 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.131086341865 chr19:4216550-4218163+ ENST00000602324.1 AntiNCintron protein-coding gene protein-coding gene ENSG00000182310 44198 547184 chr21:8395987-8396022- NoOverlap chr21 8395987 8396022 - 5.48062498371 12 0.182289361919 3.10970832904 2.37091665467 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395986;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395987-8396022-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395987-8396022&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000855529794473 0.0143649514123 0.445368989211 156377 156412 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156376;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395987-8396022-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156377-156412&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGSLFPSPSSRAAAAPPSPSLSAGR Same 548588 chr21:8395987-8396022- 47164 47164 -2966 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.888888888889 1.28571428571 0.539966666667 0.1712 -2.11291666667 2.65288333333 0.0231326790294 0.471264179413 31336 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 5.92265833333 0.3014 -0.345708333333 6.26836666667 0.0558364147024 0.584868841281 17580 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.27338561381 chr11:1252809-1252980+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 44199 547277 chr21:8440203-8440238- NoOverlap chr21 8440203 8440238 - 5.48062498371 12 0.182289361919 3.10970832904 2.37091665467 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8440202;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440203-8440238-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8440203-8440238&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000855529794473 0.0143649514123 0.445368989211 156377 156412 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156376;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440203-8440238-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156377-156412&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGSLFPSPSSRAAAAPPSPSLSAGR Same 548680 chr21:8440203-8440238- 47165 47165 -2966 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.888888888889 1.28571428571 -1.63805833333 0.2139 0.615016666667 -2.253075 0.0283788169959 0.112463581113 29323 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 4.98618333333 0.3259 6.03495 -1.04876666667 -0.00470825984802 0.290392615245 37848 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.215747459681 chr17:81131061-81131205- not annotated SSU-rRNA_Hsa 44225 505556 chr14:102052969-102052995- NoOverlap chr14 102052969 102052995 - 7.78183327781 9 0.384601951459 3.4221666654 4.35966661241 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;102052968;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A102052969-102052995-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A102052969-102052995&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0161664467748 0.0143009564416 0.622791832942 102519306 102519332 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;102519305;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A102052969-102052995-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A102519306-102519332&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFCPQLLDLYDGDSEDTPSHSNWSCNDCSLGDMSCK Same 507406 chr14:102052969-102052995- 49390 49390 -5165 0 2437 102052554 102052995 3470 3470;16427;44225 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:102052554-102052995&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 1.6875 12.8455444444 0.7368 3.83727777778 9.00826666667 0.182734034126 0.858424568502 9569 1675 1675;5325;9569 18.6807555556 0.455 6.25735555556 12.4234 0.372423493364 0.741758653167 4106 3358 3358;4106;4802 0.0 0.0 ENST00000553701.1 NCintron not annotated potentially spurious 44234 476443 chr1:244048547-244048600- NoOverlap chr1 244048547 244048600 - 4.55109993671 18 0.408700185651 1.82437221789 2.72672771883 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244048546;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048547-244048600-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244048547-244048600&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.010854891992 0.0142811368576 0.569080051402 244211849 244211902 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244211848;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048547-244048600-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244211849-244211902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGGEGAGGRTTHARGGAGQMFPPPSVRPSPSPASLPPGVGLLR Same 478337 chr1:244048547-244048600- 44712 44712 -478 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 1.11212814645 2.55155 0.5151 0.180038888889 2.37151111111 -0.00965484317179 0.500311851494 46897 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -0.877283333333 0.4016 -6.76407777778 5.88679444444 0.0584985214951 0.624151378835 17112 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0547307922327 chr16:31466079-31466889+ not annotated putative regulatory region 44305 546377 chr21:8398148-8398564+ NoOverlap chr21 8398148 8398564 + 1.97119714009 139 0.182176584208 1.86610936363 0.105087776461 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398147;417;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398148-8398564%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398148-8398564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0315496480453 0.0140783923277 0.516976562703 158551 158967 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158550;417;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398148-8398564%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158551-158967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAPSGPGGGSLGATRASPEEGDGGASARGRRRRRLPTRPVLKHGPRSLTRARVGGSHESRRGAMKVKAGALAGRGGIPRPLQSAEGAPPARLARRAGEVEHERTC*DPKDGELCLGRAKPEETLVEVRSGPDVQIGRPTWV*GRKTNRTI Same 547790 chr21:8398148-8398564+ 63016 63016 -18711 44 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.68824940048 1.16457618814 -1.28921438849 0.2653 -1.78582805755 0.496613669065 0.00396613258548 0.570247523466 39518 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -4.08189064748 0.3035 -4.88564820144 0.803757553957 0.0267762737648 0.558041276713 24768 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.064137043986 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 44306 546438 chr21:8442377-8442793+ NoOverlap chr21 8442377 8442793 + 1.97119714009 139 0.182176584208 1.86610936363 0.105087776461 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442376;417;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442377-8442793%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442377-8442793&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0315496480453 0.0140783923277 0.516976562703 158551 158967 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158550;417;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442377-8442793%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158551-158967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVGPGGGSLGATRASPEEGDGGASARGRRRRRLPTRPVLKHGPRSLTRARVGGSHESRRGAMKVKAGALAGRGGIPRPLQSAEGAPPARLARRAGEVEHERTC*DPKDGELCLGRAKPEETLVEVRSGPDVQIGRPTWV*GRKTNRTI Same 547851 chr21:8442377-8442793+ 63017 63017 -18711 44 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.68824940048 1.16457618814 -1.08157482014 0.2686 -1.7491381295 0.667563309353 0.0132548374624 0.584521077176 35415 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -4.27492805755 0.3109 -4.72700143885 0.452073381295 0.0192547964033 0.544321591379 27252 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.100587654267 chr19:44649809-44650105+ not annotated LSU-rRNA_Hsa 44341 547241 chr21:8435860-8435916- NoOverlap chr21 8435860 8435916 - 2.80606319206 19 0.192299012581 2.27016840483 0.535894787233 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8435859;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8435860-8435916-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8435860-8435916&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0183775089396 0.0139666098798 0.310461629651 152034 152090 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152033;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8435860-8435916-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152034-152090&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGPGEDERPRARPGRRGRREKGGRRGR None NA NA 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.80701754386 1.27232142857 6.20176842105 0.2715 3.78272631579 2.41904210526 0.0414041386719 0.507203884763 25175 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 11.7406526316 0.198 7.22132631579 4.51932631579 0.142050558805 0.558212027851 8425 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.305031183656 chr12:48996740-48998666- ENST00000616418.1 AntiNC not annotated SSU-rRNA_Hsa 44361 547166 chr21:8394567-8394653- NoOverlap chr21 8394567 8394653 - 1.73641030799 29 0.160284449215 0.515265487905 1.22114482008 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8394566;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394567-8394653-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8394567-8394653&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0287472032044 0.0139127630306 0.476579059124 154954 155040 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;154953;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394567-8394653-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A154954-155040&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSERTNGHAGPARARAASRWGGGCAEGSARRR Different 548571 chr21:8392920-8394653- 43210 43210 1151 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.83908045977 1.38095238095 -1.42606896552 0.2011 -3.57991724138 2.15384827586 0.00310667653213 0.542327755363 39939 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -1.42297241379 0.235 -2.2795 0.856527586207 -0.0230051556043 0.474617846894 50701 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.463258847048 chr20:2102768-2103365+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 44426 547220 chr21:8401744-8401986- NoOverlap chr21 8401744 8401986 - 2.05202348875 81 0.224791012624 1.1430012426 0.909022246154 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8401743;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401744-8401986-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8401744-8401986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0273089517985 0.013743337803 0.548713704061 118181 118423 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118180;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401744-8401986-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118181-118423&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARADKPLCRGLTFNRSQRGSCSATYETPTQKQVVYEWFSARFPTNVRCVTGEGAAASPAAPRFPGRRALRTGPRSRRAAGHAPSR Same 548622 chr21:8401744-8401986- 41469 41469 2957 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.691358024691 1.20535714286 0.381427160494 0.0988 -0.011637037037 0.393064197531 -0.000164095244107 0.453435070093 41587 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -0.810188888889 0.1112 -2.05137037037 1.24118148148 -0.0267738078365 0.561439812881 54161 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0 ENST00000617236.1,ENST00000623860.2 AntiNC,AntiNCintron not annotated SSU-rRNA_Hsa 44433 546349 chr21:8394774-8394812+ NoOverlap chr21 8394774 8394812 + 3.7895154334 13 0.170531307405 1.69291665964 2.09659877376 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8394773;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394774-8394812%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8394774-8394812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0140155187728 0.0137233552589 0.443891952949 155161 155199 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155160;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394774-8394812%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155161-155199&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSWGRRAAGSGPR None NA NA 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.871794871795 1.0790513834 -1.22829230769 0.1534 -0.0552461538462 -1.17304615385 0.0274104630572 0.181891906228 29718 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -0.617838461538 0.22 -0.0920923076923 -0.525746153846 -0.0219204140171 0.323197813454 49697 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.180532011438 chr22:19723854-19724464+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 44446 547168 chr21:8394613-8394717- NoOverlap chr21 8394613 8394717 - 2.53889142913 35 0.166330314227 0.662665683883 1.87622574525 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8394612;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394613-8394717-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8394613-8394717&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0161453236584 0.0136800304664 0.598215571658 155000 155104 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;154999;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394613-8394717-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155000-155104&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HALLSLSLSLSLSPVSLPSSPALAAGGAGRRTNERANERARGPRPRTRR Same 548574 chr21:8394613-8394717- 41815 41815 2631 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.8 1.37215909091 4.62022 0.198 2.50668 2.11354 0.0772133584576 0.605328526506 18657 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 6.38073142857 0.2264 5.81350285714 0.567228571429 0.0869818532304 0.492964072146 12923 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.261188840534 chr20:2102768-2103365+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 44447 547262 chr21:8438826-8438930- NoOverlap chr21 8438826 8438930 - 2.53889142913 35 0.166330314227 0.662665683883 1.87622574525 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8438825;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8438826-8438930-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8438826-8438930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0161453236584 0.0136800304664 0.598215571658 155000 155104 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;154999;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8438826-8438930-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155000-155104&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HALLSLSLSLSLSPVSLPSSPALAAGGAGRRTNERANERARGPRPRTRR Same 548665 chr21:8438826-8438930- 41816 41816 2631 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.8 1.37215909091 4.08885428571 0.223 1.19420857143 2.89464571429 0.0768914281224 0.677368760767 18699 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 4.11436857143 0.1704 1.45076857143 2.6636 0.0508276995559 0.583239659697 18582 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0650011230013 chr19:48502909-48502996- not annotated SSU-rRNA_Hsa 44449 546262 chr21:8216129-8216581+ NoOverlap chr21 8216129 8216581 + 1.4000549329 151 0.387579661442 1.35033574559 0.0497191873108 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8216128;453;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8216129-8216581%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8216129-8216581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0932929556657 0.0136770242401 0.561789629079 115600 116052 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;115599;453;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8216129-8216581%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A115600-116052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPADATPRRVGGPLR*ALKPRARARVEPPQVQILVVVANIQTRTLKAEVEKGSM*TAVEHGSVGPERWASAVLKGRAMASVALGRSKGSRVQIPESGVAEMGAARRPVR*RDRSRRSRREPRGEFSFLCEGQGALEWVRPERGARALESVAVPAASGELSLALENPGER Same 547675 chr21:8216129-8216581+ 32258 32258 12191 96 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.649006622517 1.07185281762 -0.00175430463576 0.2477 -0.0923258278146 0.0905715231788 0.0442192220233 0.614813999006 24473 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -1.59638145695 0.1714 -1.40656423841 -0.189817218543 0.0193147289937 0.534466456887 27228 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0374834762062 chr3:9840532-9840617- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 44462 487453 chr11:20276775-20276828- NoOverlap chr11 20276775 20276828 - 3.72723339291 18 0.995205276231 -0.807838921746 4.53507231466 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;20276774;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A20276775-20276828-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A20276775-20276828&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0331087821013 0.0136479330747 0.798794110183 20298321 20298374 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;20298320;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A20276775-20276828-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A20298321-20298374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HYLWMTDFKVNDLPH*IVPSAAQ Same 489423 chr11:20276775-20276828- 58985 58985 -14523 5 743 20274456 20277249 1144 1144;16499;34687;35486;44462 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:20274456-20277249&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.462962962963 0.0 3.76607222222 0.9985 -0.200783333333 3.96685555556 0.224202096682 0.641892908264 7832 Best 7832 7832;14487;49634;64437;70242 0.489694444444 0.7319 -6.81387777778 7.30357222222 0.143320349568 0.684200456995 8350 Best 8350 8350;41275;47988;61181;69341 0.0 0.0 not annotated putative regulatory region 44486 552737 chr3:71004793-71004858+ NoOverlap chr3 71004793 71004858 + 3.20230906118 22 0.996421759365 -0.527613675052 3.72992273623 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;71004792;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71004793-71004858%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A71004793-71004858&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.016053958479 0.0135862991805 0.743582661506 71053944 71054009 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;71053943;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71004793-71004858%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A71053944-71054009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DVKPVIRDKLWNIFFWSHCLMVLFILCYIR Same 553678 chr3:71004793-71004858+ 57559 57559 -13073 0 1139 71003497 71007603 1733 1733;12046;22344;31751;34119;35077;44486;44775 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:71003497-71007603&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.378787878788 0.423076923077 -0.826263636364 1.0 -1.63970454545 0.813440909091 -0.00802373049666 0.387568878619 45905 3178 3178;6887;32675;36085;37626;45905;46741;64024 -4.79867272727 0.8818 -7.93288636364 3.13421363636 0.00846763475115 0.525789337222 31390 10807 10807;16615;30087;31390;48859;55997;64759;66587 0.0 0.0 ENST00000318789.8,ENST00000327590.8 AntiCDSintron,AntiNCintron not annotated putative regulatory region 44576 589479 chr9:92141592-92141672+ NoOverlap chr9 92141592 92141672 + 2.98762225705 27 0.182946630158 0.512137010142 2.4754852469 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;92141591;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A92141592-92141672%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A92141592-92141672&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00844303189775 0.0133703423319 0.624981531797 94903874 94903954 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;94903873;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A92141592-92141672%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A94903874-94903954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TASCCLPTALELGLSAIPGDLDPLTAYL*VLPACLHLVLR Same 590426 chr9:92141592-92141672+ 42668 42668 1908 6 21759 92141418 92141672 42668 42668;44576;44948;45834 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:92141418-92141672&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641975308642 0.482142857143 5.12695185185 0.3962 0.948614814815 4.17833703704 0.0872150504135 0.737705213603 17366 Best 17366 17366;40112;46286;47334 15.8875148148 0.4195 7.85493333333 8.03258148148 0.616568101048 0.744014546901 3112 Best 3112 3112;5366;55318;55885 0.745573339773 chr1:202193990-202194201+ 0.944585455316 chr1:202193990-202194201+ ENST00000367276.8 NC pseudogene leucine rich repeat containing G protein-coupled receptor 6 (LGR6) pseudogene (ENSG00000225511) 44649 509841 chr15:89333549-89333596- NoOverlap chr15 89333549 89333596 - 5.10991879785 16 0.571883344778 2.99706254154 2.11285625631 ENST00000268124.9,ENST00000442287.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;89333548;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89333549-89333596-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A89333549-89333596&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0546797232758 0.0132084655721 0.461129268663 89876780 89876827 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;89876779;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89333549-89333596-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A89876780-89876827&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAAAAAAAAAAAAAATAASAAASAILGGRAAAAQPIGHPDALER Same 511576 chr15:89333549-89333596- 45795 45795 -1146 0 569 89330211 89335145 867 867;1516;6244;11372;42877;43590;44649;44946 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:89330211-89335145&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.5625 4.46075625 0.6968 3.67809375 0.7826625 0.022922275703 0.338282187082 31414 991 991;1902;3329;4879;5570;8149;31414;32743 0.5696125 0.4631 0.2313875 0.338225 0.00341968389238 0.378493776174 33671 1954 1954;9286;12402;21990;33671;37713;45376;71871 0.0 0.0255503539546 chr1:153775114-153776164+ ENST00000268124.9,ENST00000631044.2 CDS,NC under investigation POLG contains a series of NPRs in the first and second coding exon that are out of frame to the annotated CDS (the POLG CDS is conserved in vertebrates). These NPRs in combination find a prospective alternative CDS with a STOP codon conserved in therian mamamls - found precisely at the terminus of the most 3' NPR - although no ATG initiation codon has been identified. However, a potential non-ATG initiation codon [CTG] at chr15:89333809 corresponds well with the beginning of the NPR series, creating a predicted 261aa CDS that is conserved in therian mammals. We have identified additional support for the translation of this alternative CDS within the mass spectrometry datasets provided by Pandey et al, specifically peptides [AAAAQPJGHPDAJER] and [AAAAAAAAAAAAAAATAASAAASAJJGGR] in CD8 cells. However, at the present time there is no evidence to suggest how this alternative CDS may be transcribed and translated, and it is unclear how to construct a transcript model. 44653 499798 chr13:51816907-51816966- NoOverlap chr13 51816907 51816966 - 3.34218007028 20 0.508421454185 -0.754639972746 4.09682004303 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51816906;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51816907-51816966-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51816907-51816966&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 7.41219148756e-05 0.013198073774 0.769210042703 52391043 52391102 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;52391042;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51816907-51816966-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A52391043-52391102&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YYIHLLLSLFLFLWFILGNYWVFSVYLPDFLPPFQQPQDYCDK Same 501805 chr13:51816907-51816966- 44803 44803 -150 0 8867 51816907 51817074 13029 13029;44653 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51816907-51817074&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.483333333333 0.0 5.75691 0.7237 -1.4073 7.16421 0.276653575824 0.902671514281 6165 3073 3073;6165 22.223485 0.5715 1.86131 20.362175 0.953609111414 1.01448110426 1788 Best 1788 1788;1958 0.0 0.0 ENST00000626362.2 NC redundant PhyloCSF signals are accounted for elsewhere on the list 44685 574589 chr6:34237335-34237421- NoOverlap chr6 34237335 34237421 - 4.35269997706 29 0.294292336551 3.44090687406 0.911793102992 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34237334;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237335-34237421-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34237335-34237421&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0111762316423 0.0131034125074 0.422569294118 34205112 34205198 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34205111;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237335-34237421-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34205112-34205198&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPGLGIKPAARAAAPGGSQEGRRAGGGAGAPLRRRRRGPR Same 575621 chr6:34237335-34237421- 45804 45804 -1119 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.908045977011 1.06370656371 1.52676551724 0.2033 0.585324137931 0.94144137931 0.0171327218263 0.450628855251 33745 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -3.47226896552 0.188 -5.01087241379 1.53860344828 -0.0417548580736 0.499267883978 66512 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0 ENST00000311487.9,ENST00000478214.1 AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000186577 44775 552738 chr3:71005812-71005850+ NoOverlap chr3 71005812 71005850 + 5.48301535386 13 0.96245811105 1.68125396967 3.80176138419 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;71005811;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71005812-71005850%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A71005812-71005850&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0683212759926 0.0128293695535 0.643579436838 71054963 71055001 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;71054962;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A71005812-71005850%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A71054963-71055001&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFQQLIPASKYTAHIK Same 553679 chr3:71005812-71005850+ 49135 49135 -4360 0 1139 71003497 71007603 1733 1733;12046;22344;31751;34119;35077;44486;44775 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:71003497-71007603&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.541666666667 5.52300769231 0.9839 -0.748415384615 6.27142307692 0.252876501934 0.774592427306 6887 3178 3178;6887;32675;36085;37626;45905;46741;64024 -4.38536923077 0.6543 -7.66836153846 3.28299230769 -0.0209384121488 0.471090460901 48859 10807 10807;16615;30087;31390;48859;55997;64759;66587 0.0 0.0 ENST00000318789.8,ENST00000327590.8 AntiCDSintron,AntiNCintron not annotated putative regulatory region 44946 509838 chr15:89330211-89330273- NoOverlap chr15 89330211 89330273 - 3.2780904997 21 0.930475536518 -0.311171379827 3.58926187952 ENST00000268124.9,ENST00000442287.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;89330210;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89330211-89330273-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A89330211-89330273&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00577174040487 0.0124355623461 0.717730778485 89873442 89873504 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;89873441;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A89330211-89330273-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A89873442-89873504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FNVSMVNLPASHLPQVFLVQPAAGGRALLLDQPAVAG Same 511573 chr15:89330211-89330273- 47380 47380 -2434 0 569 89330211 89335145 867 867;1516;6244;11372;42877;43590;44649;44946 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:89330211-89335145&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.650793650794 0.602870813397 3.94675714286 0.9813 -1.00857619048 4.95533333333 0.30186733004 0.753874251706 5570 991 991;1902;3329;4879;5570;8149;31414;32743 -26.3797142857 0.9828 -34.5107333333 8.13101904762 -0.0164001696651 0.435267252615 45376 1954 1954;9286;12402;21990;33671;37713;45376;71871 0.0 0.0 ENST00000268124.9,ENST00000631044.2 CDS,NC under investigation POLG contains a series of NPRs in the first and second coding exon that are out of frame to the annotated CDS (the POLG CDS is conserved in vertebrates). These NPRs in combination find a prospective alternative CDS with a STOP codon conserved in therian mamamls - found precisely at the terminus of the most 3' NPR - although no ATG initiation codon has been identified. However, a potential non-ATG initiation codon [CTG] at chr15:89333809 corresponds well with the beginning of the NPR series, creating a predicted 261aa CDS that is conserved in therian mammals. We have identified additional support for the translation of this alternative CDS within the mass spectrometry datasets provided by Pandey et al, specifically peptides [AAAAQPJGHPDAJER] and [AAAAAAAAAAAAAAATAASAAASAJJGGR] in CD8 cells. However, at the present time there is no evidence to suggest how this alternative CDS may be transcribed and translated, and it is unclear how to construct a transcript model. 44948 589478 chr9:92141426-92141536+ NoOverlap chr9 92141426 92141536 + 1.69795406106 37 0.1551162057 1.46602974792 0.231924313146 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;92141425;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A92141426-92141536%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A92141426-92141536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0255019931317 0.0124318536746 0.386312625858 94903708 94903818 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;94903707;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A92141426-92141536%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A94903708-94903818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PSSPAAEMPNPPRLRAL*LRAAVCASPSAGCAPQPGPGPTACPAPCHCQEDGIMLSADCS Same 590425 chr9:92141426-92141536+ 43117 43117 1831 15 21759 92141418 92141672 42668 42668;44576;44948;45834 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:92141418-92141672&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.810810810811 0.913580246914 0.0626324324324 0.3583 -1.83645945946 1.89909189189 -0.00860783426382 0.56983952446 46286 17366 17366;40112;46286;47334 0.433167567568 0.3348 -8.13632972973 8.5694972973 0.240400521536 0.834101589931 5366 3112 3112;5366;55318;55885 0.859910366147 chr1:202193990-202194201+ 0.871067062465 chr1:202193990-202194201+ ENST00000367276.8 NC pseudogene leucine rich repeat containing G protein-coupled receptor 6 (LGR6) pseudogene (ENSG00000225511) 44980 499011 chr13:110989986-110990123+ NoOverlap chr13 110989986 110990123 + 2.17478478651 46 0.173265530201 0.292160836899 1.88262394961 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;110989985;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A110989986-110990123%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A110989986-110990123&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0199135697896 0.0123381444558 0.649047242452 111642333 111642470 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;111642332;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A110989986-110990123%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A111642333-111642470&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GIVQQFLVLLTTSSDESLRFLSFRLDFNEHYKAREPRLRVSLGTRGRR Same 501028 chr13:110989986-110990123+ 40783 40783 4197 0 22424 110989986 110990123 Best 44980 44980 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:110989986-110990123&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.579710144928 0.69696969697 2.66249130435 0.1656 -0.212323913043 2.87481521739 0.0722189244166 0.717477230733 19354 Best 19354 19354 27.7809391304 0.638 7.65690434783 20.1240347826 1.06634425405 1.03587942022 186 Best 186 186 0.0 0.940340373778 chr13:112485993-112486151- ENST00000440735.1 NC pseudogene tubulin gamma complex associated protein 3 (TUBGCP3) pseudogene (ENSG00000225760) 44984 547248 chr21:8436295-8436372- NoOverlap chr21 8436295 8436372 - 3.08014230316 26 0.168623929668 1.53791923362 1.54222306953 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436294;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436295-8436372-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436295-8436372&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.011299886568 0.0123337764157 0.491488260161 152469 152546 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152468;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436295-8436372-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152469-152546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGPVEGPGPGRSPAPSPAGGRGRRGGTR Same 548651 chr21:8436295-8436372- 43815 43815 1169 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.871794871795 0.947916666667 1.30656153846 0.2619 -7.13987692308 8.44643846154 0.0523568636961 1.01217625013 22648 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 3.23685384615 0.2336 -3.57185 6.80870384615 0.125195017304 0.716546016278 9468 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.106988379705 chr12:48996740-48998666- not annotated SSU-rRNA_Hsa 44994 547235 chr21:8434967-8435080- NoOverlap chr21 8434967 8435080 - 2.53271314972 38 0.19814482418 0.230560536447 2.30215261328 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8434966;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8434967-8435080-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8434967-8435080&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00942860675175 0.0122835636188 0.67180595742 151141 151254 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;151140;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8434967-8435080-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A151141-151254&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPRARRARPRATQTRSSAPVTTRHGSGRRADSRRRGSRAGQSAGR Same 548638 chr21:8434967-8435080- 41323 41323 3671 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.789473684211 1.12815437902 1.85108421053 0.2763 -0.737160526316 2.58824473684 0.035880185766 0.655017943168 26726 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 6.42974473684 0.2631 6.49541578947 -0.0656710526316 0.105761971538 0.477055058127 10981 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.288088874447 chr9:127744564-127745099- not annotated SSU-rRNA_Hsa 45048 582318 chr7:115679172-115679219- NoOverlap chr7 115679172 115679219 - 4.78259992413 16 0.884107728695 3.04493755102 1.73766237311 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;115679171;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115679172-115679219-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A115679172-115679219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.128375173323 0.0121431143943 0.415180901874 115319226 115319273 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;115319225;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115679172-115679219-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A115319226-115319273&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KRLHFLPDFS*DQNQWR Same 583279 chr7:115679172-115679219- 43576 43576 1472 5 5672 115673834 115679526 7911 7911;18821;19702;21896;25172;45048;57068 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:115673834-115679526&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.479166666667 0.369230769231 -0.19180625 1.0 -0.79070625 0.5989 -0.0140779589575 0.330967989991 49962 9148 9148;20280;33321;35228;35655;36146;49962 -2.30376875 0.9201 -6.1015125 3.79774375 0.0169715024349 0.519354071553 28039 6859 6859;16053;21757;25065;26080;28039;62910 0.0 0.0 not annotated potentially spurious 45084 588685 chr9:32552614-32552643+ NoOverlap chr9 32552614 32552643 + 7.43271009922 10 0.717489890898 5.30794005692 2.1247700423 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;32552613;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A32552614-32552643%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A32552614-32552643&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0841492685857 0.0120780316997 0.358502747574 32552612 32552641 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;32552611;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A32552614-32552643%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A32552612-32552641&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LRLFLEDTIFR Same 589631 chr9:32552614-32552643+ 44334 44334 750 0 252 32552441 32552896 324 324;3243;45084 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:32552441-32552896&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 1.16883116883 -2.87719 0.977 -1.26087 -1.61632 -0.0242927137445 0.149616935878 57020 300 300;1307;57020 -6.90744 0.3447 -4.61421 -2.29323 -0.0127975728416 0.23480106371 42711 138 138;2723;42711 0.0 0.0 ENST00000425533.1 NCintron protein-coding gene protein-coding gene ENSG00000235453 45200 546429 chr21:8441747-8441911+ NoOverlap chr21 8441747 8441911 + 2.65838545778 55 0.181187845495 2.98659457456 -0.328209116784 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441746;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441747-8441911%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441747-8441911&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0357648069338 0.0117812028866 0.370211330856 157921 158085 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157920;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441747-8441911%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157921-158085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RVRGWAGGAGGGVGGGPSPDRRPAAAGRISTAAVRRDRLRDGWEGPAGKVARGAPSVRPSVLLLPR Same 547842 chr21:8441747-8441911+ 46971 46971 -1771 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.854545454545 1.01162790698 -0.771334545455 0.2402 -0.0317454545455 -0.739589090909 -0.0202086204554 0.342631808066 54297 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -7.16588363636 0.3494 -4.55420363636 -2.61168 -0.0338235868486 0.376556606285 60499 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.164790143622 chr16:376136-376455- not annotated LSU-rRNA_Hsa 45226 577720 chr7:27184236-27184289+ NoOverlap chr7 27184236 27184289 + 4.10680560768 18 0.888356518569 1.46422772275 2.64257788493 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27184235;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184236-27184289%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27184236-27184289&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0891815695843 0.0117202810551 0.562106078563 27223855 27223908 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27223854;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184236-27184289%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27223855-27223908&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSCFFLQACLGRWVFHGQFQHSPRDPAFYNK Same 578759 chr7:27184236-27184289+ 44095 44095 1131 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 1.07142857143 -0.0295055555556 0.9535 -2.39644444444 2.36693888889 0.00836264994304 0.497926199782 37505 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -8.44063888889 0.8695 -11.2336777778 2.79303888889 -0.0358537894546 0.470829817505 62130 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000006015.3 AntiCDSintron not annotated putative regulatory region 45247 551499 chr3:14810652-14810768+ NoOverlap chr3 14810652 14810768 + 2.98095128552 39 0.162614222582 2.69139235027 0.289558935242 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;14810651;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A14810652-14810768%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A14810652-14810768&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0226525482892 0.0116630172395 0.401138448303 14852159 14852275 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;14852158;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A14810652-14810768%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A14852159-14852275&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APSSSPAPRPRPAAPPRRLAARAPTALRAARSPRRAGAGRAPGGAGPAGRPR Same 552436 chr3:14810652-14810768+ 44021 44021 1226 0 175 14810490 14819071 211 211;30409;44113;45247 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:14810490-14819071&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.905982905983 1.00106951872 0.110428205128 0.3513 0.427233333333 -0.316805128205 -0.0233838607925 0.3700375953 56426 440 440;41521;52016;56426 -2.24968461538 0.2119 -2.54306410256 0.293379487179 -0.0368546647366 0.48571960612 62854 893 893;26665;62854;71416 0.0 0.249450267379 chr6:42104463-42107583- ENST00000566553.1 AntiNCintron coding exon(s) FGD5 alternative 5' CDS 45378 505803 chr14:105629778-105629804- NoOverlap chr14 105629778 105629804 - 3.512700061 9 0.219111077202 1.85374450684 1.65895555417 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;105629777;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105629778-105629804-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A105629778-105629804&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0302219968812 0.0113225677325 0.352359887813 106096115 106096141 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;106096114;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A105629778-105629804-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A106096115-106096141&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VWGSMGAATTPIPTHP Same 507629 chr14:105629778-105629804- 47686 47686 -2308 0 594 105621918 105644790 914 914;1169;1411;1549;1690;2312;2427;3628;4247;5460;7127;16817;16907;19913;22029;35414;45378 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:105621918-105644790&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.740740740741 0.0 -2.65515555556 0.3984 -4.99513333333 2.33997777778 0.00926359582569 0.427379284909 37103 11 11;14;21;25;33;521;898;958;1211;1834;2136;3210;3810;4222;5213;27477;37103 -2.7884 0.2082 -4.77918888889 1.99078888889 -0.0144918935323 0.389794059707 43935 108 108;298;423;931;1374;2038;2236;2382;2418;2665;2818;2901;2912;3381;3564;43935;63975 0.0 0.125432658071 chr11:65581211-65581373+ immunoglobulin segment overlaps an immunoglobulin region 45506 547291 chr21:8441129-8441704- NoOverlap chr21 8441129 8441704 - 1.35908074444 192 0.18296950103 1.20120208936 0.157878655087 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441128;576;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441129-8441704-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441129-8441704&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0193913654972 0.0109905568296 0.682830289251 157303 157878 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157302;576;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441129-8441704-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157303-157878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GKGGRVEGSGGTGGGKDPPGRRHGRTRRRVESSGRTARTPPVYLLTVSRPLELSLQSSFQLSLTVLVDYRSRAGI*P*MEFTTRFGLHSQATRLREDPGPARRGPLPASHRPRAGPRSEGLGPPTSGAGERVFRTPHVPRPAAGRGFGAGLFPVHSPLLRESWLVSSPPLTNMLKFSGSPRLI*GRVSEGDGPLGGR Same 548694 chr21:8441129-8441704- 46339 46339 -833 86 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.649305555556 1.02127659574 -2.47338854167 0.2908 -1.98666927083 -0.486719270833 -0.0319234709846 0.718097077796 61740 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -6.95741822917 0.3656 -6.81500416667 -0.1424140625 0.0146838337488 0.458748632866 28866 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0792014495191 chr19:19226486-19227073+ not annotated SSU-rRNA_Hsa 45508 527725 chr19:28608547-28608783+ NoOverlap chr19 28608547 28608783 + 1.27133039923 79 0.159755585237 -3.35602532846 4.62735572769 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28608546;237;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28608547-28608783%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28608547-28608783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0153139833377 0.010988844074 0.965645946638 29099454 29099690 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29099453;237;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28608547-28608783%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29099454-29099690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAQKKGAQKATNVNKVSEVIQGKDESPAQFYERLCEAYCRCTPFDPDSPENQRMISMTLVSRSAEDIRRKLQKQAGFAGMNTSVIGDSQPGVR Same 529172 chr19:28608547-28608783+ 23651 23651 21857 0 19357 28608133 28611285 36033 36033;38545;39010;41587;43070;45508;47044;48128 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28608133-28611285&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.434599156118 0.363218390805 -1.05515189873 0.0281 -2.65633417722 1.60118227848 -0.0120602388284 0.536498210165 48514 26060 26060;29422;36006;38223;39249;43455;47313;48514 -1.05515189873 0.0088 -2.65633417722 1.60118227848 -0.0332680516923 0.576430858014 60003 27094 27094;34090;60003;61081;61427;61444;64226;70401 0.0 0.0 ENST00000587961.1,ENST00000585394.1 NCintron,AntiNCintron not annotated potentially spurious 45513 547190 chr21:8396468-8396584- NoOverlap chr21 8396468 8396584 - 2.29004614437 39 0.206369663499 -0.396512810618 2.68655895499 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8396467;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396468-8396584-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8396468-8396584&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00846245895956 0.0109591827895 0.72669443633 156861 156977 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156860;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396468-8396584-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156861-156977&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGGRATADDTAASRGSPPGTREPRRRGHGRGRAGRGAGSRPRPTR Same 548594 chr21:8396468-8396584- 40559 40559 4954 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.897435897436 1.27450980392 0.141046153846 0.2345 0.102407692308 0.0386384615385 -0.00292332266613 0.402905629784 43011 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 1.25445641026 0.2723 0.578458974359 0.675997435897 0.0315328651808 0.508659003116 23310 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.100924169156 chr12:56599129-56599358- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 45514 547286 chr21:8440687-8440803- NoOverlap chr21 8440687 8440803 - 2.29004614437 39 0.206369663499 -0.396512810618 2.68655895499 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8440686;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440687-8440803-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8440687-8440803&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00846245895956 0.0109591827895 0.72669443633 156861 156977 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156860;117;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440687-8440803-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156861-156977&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGGRATADDTAASRGSPPGTREPRRRGHGRGRAGRGAGSRPRPTR Same 548689 chr21:8440687-8440803- 40560 40560 4954 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.897435897436 1.27450980392 -2.28476666667 0.2511 -2.45585128205 0.171084615385 -0.0183900813236 0.386600858362 53018 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -2.16112564103 0.3195 -3.35920769231 1.19808205128 0.00657869948441 0.525141717032 32235 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0254387692436 chr19:1042662-1042826+ not annotated SSU-rRNA_Hsa 45549 570019 chr5:176151947-176152000- NoOverlap chr5 176151947 176152000 - 4.19664433516 18 0.237776251876 0.813111020459 3.3835333147 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;176151946;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176151947-176152000-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A176151947-176152000&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00472904061058 0.010824756102 0.657686102259 175578950 175579003 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;175578949;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176151947-176152000-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A175578950-175579003&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLATSAALPVTVGSPVMKVITCK Same 571037 chr5:176151947-176152000- 45402 45402 147 0 6143 176146963 176156969 8635 8635;13435;25692;32992;35007;45549;51680 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:176146963-176156969&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.574074074074 0.453781512605 7.10214444444 0.4126 1.09076111111 6.01138333333 0.0942156829882 0.801496486176 16509 17 17;170;306;1893;3127;16509;16641 7.10214444444 0.129 1.09076111111 6.01138333333 0.0637953815506 0.623743291247 16194 11 11;134;388;800;3031;3612;16194 0.915978024436 chr18:13059082-13059314+ 0.915744438219 chr18:13059082-13059314+ ENST00000515403.5,ENST00000510029.1 NCintron,AntiNCintron pseudogene centrosomal protein 192kDa (CEP192) pseudogene (ENSG00000283559) 45585 531728 chr19:48493771-48493986- NoOverlap chr19 48493771 48493986 - 2.23916246411 72 0.402127361969 1.75785137547 0.481311088635 ENST00000270238.3,ENST00000600059.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48493770;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48493771-48493986-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48493771-48493986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0496547077035 0.0107380208812 0.494689413545 48997028 48997243 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48997027;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48493771-48493986-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48997028-48997243&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAGRPAGRERRGRRRRTGRTRTRTRRRTRRRRRRARRRGRGAPGGREQPRCPSW*AAPTRTRPARCGGCSSLRAGPTSQR Same 533203 chr19:48493771-48493986- 41196 41196 4389 23 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 1.14119667151 -1.66624027778 0.6239 -3.21395416667 1.54771388889 0.0253843695721 0.525780531789 30483 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -24.1491638889 0.7578 -23.0512 -1.09796388889 -0.0492432449477 0.422536225699 71040 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.368339664728 chr17:81120201-81122823- ENST00000270238.3 CDS coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 45627 518847 chr17:65100869-65100895+ NoOverlap chr17 65100869 65100895 + 6.82571122381 9 0.499087001857 -2.30135558049 9.1270668043 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;65100868;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A65100869-65100895%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A65100869-65100895&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0283198562519 0.0106405208352 1.02492636493 63096987 63097013 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;63096986;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A65100869-65100895%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A63096987-63097013&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALPAQPPPRRPPRAGASQAAFR Same 520259 chr17:65100869-65100895+ 42590 42590 3037 0 22601 65100869 65100895 Best 45627 45627 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:65100869-65100895&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.9 -10.3132333333 0.6117 -4.87703333333 -5.4362 0.0129262474459 0.119824125878 35555 Best 35555 35555 -9.54103333333 0.2366 -3.3963 -6.14473333333 0.030707324534 0.11201636283 23537 Best 23537 23537 0.0 0.0 ENST00000582940.1 NC coding exon(s) RGS9 alternative first exon 45644 467304 chr1:153922773-153922814+ NoOverlap chr1 153922773 153922814 + 5.76813569239 14 0.582047760739 3.95056431847 1.81757137392 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;153922772;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922773-153922814%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A153922773-153922814&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0588465833674 0.0105875245466 0.392885810515 153895249 153895290 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;153895248;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922773-153922814%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A153895249-153895290&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLRRRRRRRKRKRRRHR Same 469171 chr1:153922773-153922814+ 46634 46634 -990 0 442 153922296 153923335 631 631;25620;45644;48477;49099;61066;66023;69687 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:153922296-153923335&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.690476190476 1.63333333333 0.7908 0.5226 -4.90790714286 5.69870714286 -0.00784346638822 0.745680171715 45793 8425 8425;19724;29638;38385;45793;48574;52177;55960 -4.82789285714 0.2707 -8.56855714286 3.74066428571 -0.0198825655308 0.496279487745 47982 6002 6002;12984;19687;42340;44124;45459;47982;71255 0.0 0.0 ENST00000368655.4 AntiUTR5 not annotated putative regulatory region 45693 547172 chr21:8394899-8395000- NoOverlap chr21 8394899 8395000 - 2.21341473812 34 0.163133305508 0.376673534074 1.83674120404 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8394898;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394899-8395000-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8394899-8395000&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0185932471735 0.0104620786838 0.587651048909 155288 155389 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155287;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394899-8395000-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155288-155389&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARRRGAARRRRRESGRPRRRGAGAAGPDDGPRRGGGHR Same 548577 chr21:8394899-8395000- 42606 42606 3087 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.872549019608 1.24126984127 5.81761176471 0.2534 3.58982941176 2.22778235294 0.0969721893042 0.610178982002 16193 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 10.9939617647 0.339 11.6084470588 -0.614485294118 0.222621375624 0.43757032822 5695 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0479806707481 chr12:48999079-48999287- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 45694 547265 chr21:8439114-8439215- NoOverlap chr21 8439114 8439215 - 2.21341473812 34 0.163133305508 0.376673534074 1.83674120404 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439113;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439114-8439215-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439114-8439215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0185932471735 0.0104620786838 0.587651048909 155288 155389 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155287;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439114-8439215-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155288-155389&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARRRGAARRRRRESGRPRRRGAGAAGPDDGPRRGGGHR Same 548668 chr21:8439114-8439215- 42607 42607 3087 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.872549019608 1.24126984127 2.46549117647 0.2781 -0.914282352941 3.37977352941 0.0477993176165 0.71078809476 23640 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 8.91188235294 0.3551 5.5704 3.34148235294 0.300509626628 0.605606934546 4621 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.130325402431 chr17:81127792-81127910- not annotated SSU-rRNA_Hsa 45792 529346 chr19:58578105-58578158+ NoOverlap chr19 58578105 58578158 + 4.2473888629 18 0.30466417436 0.671844489045 3.57554437386 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;58578104;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58578105-58578158%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A58578105-58578158&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00374463367882 0.010203913801 0.681478690528 59089472 59089525 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;59089471;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A58578105-58578158%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A59089472-59089525&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MYLGVLPPAICVWVEPQCPESSEEAMALVEDFTQMLK Same 530805 chr19:58578105-58578158+ 44799 44799 993 0 462 58578105 58581980 664 664;10695;22905;23620;29825;45792 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:58578105-58581980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.1875 1.19460555556 0.3407 -1.86438888889 3.05899444444 -0.00178405471556 0.561281615481 42404 12 12;3572;4861;7429;7858;42404 6.32508333333 0.222 -3.95322777778 10.2783111111 0.164850107152 0.795322912536 7342 2070 2070;2199;2636;3032;3216;7342 0.161560754263 chr19:58334803-58335205+ 0.252111445188 chr16:3402005-3402406+ ENST00000473164.1 NCintron pseudogene CENPBD1P1 CENPB DNA-binding domains containing 1 pseudogene 1 (ENSG00000285138) 45808 522541 chr17:58324435-58324464- NoOverlap chr17 58324435 58324464 - 7.51972991228 10 0.598159761959 4.88292001486 2.63680989742 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;58324434;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A58324435-58324464-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A58324435-58324464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0483650085562 0.0101486192311 0.422393101974 56401796 56401825 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;56401795;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A58324435-58324464-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A56401796-56401825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CQWYGPAANPWLSWQPPGAQPAPPPPAAAVERGRPR Same 523969 chr17:58324435-58324464- 47988 47988 -2180 0 927 58324435 58331258 1430 1430;23079;35188;45808;68388 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:58324435-58331258&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.866666666667 1.09090909091 4.71047 0.9044 1.66195 3.04852 0.0237849663589 0.472598597414 31103 3022 3022;4098;31103;33297;53580 -8.47703 0.5463 -13.17213 4.6951 -0.0421193452958 0.488530436164 66751 4412 4412;7618;50126;62080;66751 0.0 0.114563288627 chr22:21546057-21550976- ENST00000268893.10 CDSintron not annotated putative regulatory region 45828 547244 chr21:8436112-8436219- NoOverlap chr21 8436112 8436219 - 1.19841388199 36 0.164563888677 0.399205587649 0.799208294342 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436111;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436112-8436219-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436112-8436219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0327068029174 0.01010286329 0.459290482999 152286 152393 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152285;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436112-8436219-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152286-152393&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTATGAEAPARAPPPDPGKGRATGKAEVDPRHTSHERLSGR Same 548647 chr21:8436112-8436219- 42749 42749 3079 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.796296296296 0.939130434783 2.34694444444 0.2492 -1.14200555556 3.48895 0.0534337888739 0.730671999402 22442 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 4.12621944444 0.2098 -0.730455555556 4.856675 0.123584261883 0.680916783371 9580 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.25782648917 chr1:16048972-16049245+ ENST00000613635.1 AntiNC not annotated SSU-rRNA_Hsa 45834 589477 chr9:92141425-92141532+ NoOverlap chr9 92141425 92141532 + 1.63163055397 36 0.153344692827 0.0571889207802 1.57444163319 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;92141424;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A92141425-92141532%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A92141425-92141532&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0271719214467 0.0100744676566 0.563578097472 94903707 94903814 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;94903706;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A92141425-92141532%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A94903707-94903814&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVTQQPGRRDAQPAQAPGAVTSRRCVRLPERRLRPPARPGAYR Same 590424 chr9:92141425-92141532+ 42318 42318 3516 0 21759 92141418 92141672 42668 42668;44576;44948;45834 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:92141418-92141672&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.824074074074 0.905660377358 -2.64265833333 0.3549 -7.91007222222 5.26741388889 -0.0103334399735 0.822178418874 47334 17366 17366;40112;46286;47334 -9.69367777778 0.3353 -14.4211194444 4.72744166667 -0.0286459852539 0.633508183257 55885 3112 3112;5366;55318;55885 0.849211804433 chr1:202193990-202194201+ 0.863858546094 chr1:202193990-202194201+ ENST00000367276.8 NC pseudogene leucine rich repeat containing G protein-coupled receptor 6 (LGR6) pseudogene (ENSG00000225511) 45847 547233 chr21:8434801-8434962- NoOverlap chr21 8434801 8434962 - 1.67315558317 54 0.207574408925 -1.22984626668 2.90300184985 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8434800;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8434801-8434962-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8434801-8434962&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0106673113621 0.0100395182461 0.798847210487 150975 151136 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;150974;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8434801-8434962-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A150975-151136&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGHAPDRAPGAHTHRPPAAASQPAGNAGPGPAGSSPDSEGGGAGHSRRRAALGHHRGGRR Same 548636 chr21:8434801-8434962- 36785 36785 9062 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.814814814815 1.04516129032 -3.66181296296 0.2861 -8.40356851852 4.74175555556 -0.0152433694965 0.774818344513 50752 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -4.39104259259 0.2918 -7.97692962963 3.58588703704 0.0116027574235 0.649576226535 30073 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.142405982868 chr9:127744564-127745099- not annotated SSU-rRNA_Hsa 45866 477053 chr10:26653130-26653189+ NoOverlap chr10 26653130 26653189 + 4.43393498771 20 0.233075455863 2.53232496977 1.90161001794 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;26653129;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26653130-26653189%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A26653130-26653189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00570255881436 0.00996703713604 0.47961353331 26942059 26942118 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;26942058;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26653130-26653189%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A26942059-26942118&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STPGPPRPQVQPAPPPPVQRSCDTSGSPATPPK Same 478946 chr10:26653130-26653189+ 46939 46939 -1073 0 22672 26653130 26653357 Best 45866 45866;48140 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:26653130-26653357&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.267857142857 12.938015 0.5905 7.26621 5.671805 0.371639384983 0.767099246189 4376 Best 4376 4376;18874 15.22079 0.216 8.362475 6.858315 0.267488148664 0.651607290549 4978 Best 4978 4978;13659 0.994359849394 chr10:26566961-26567488+ 1.00262439413 chr10:26566961-26567488+ ENST00000423917.5 NC pseudogene family with sequence similarity 238 member B (non-protein coding) FAM238B pseudogene (ENSG00000231976) 45887 512398 chr16:73877344-73877439+ NoOverlap chr16 73877344 73877439 + 2.1511031352 32 0.95390249485 -0.894693760201 3.0457968954 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;73877343;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73877344-73877439%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A73877344-73877439&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0466512593117 0.00991829444683 0.734522490279 73911243 73911338 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;73911242;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A73877344-73877439%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A73911243-73911338&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPLDSSCNFFFLFMTCWQGGWQF*NLTK*EKCQKLN*QLVVTMVIGDIEK Same 514042 chr16:73877344-73877439+ 48452 48452 -2565 21 802 73871387 73890893 1245 1245;5929;26802;45887 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:73871387-73890893&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.40625 0.0 -1.200815625 0.9998 -1.250584375 0.04976875 -0.015995239938 0.367325801397 51299 10495 10495;22286;51299;68737 -4.425503125 0.8561 -4.892209375 0.46670625 0.01025296398 0.463669696075 30661 6191 6191;30661;47708;50590 0.0 0.0 not annotated putative regulatory region 45931 531215 chr19:40466979-40467008- NoOverlap chr19 40466979 40467008 - 5.69715989828 10 0.434099336233 -4.74816015959 10.4453200579 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;40466978;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40466979-40467008-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A40466979-40467008&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0282768193176 0.00978874331969 1.04654438586 40972886 40972915 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;40972885;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40466979-40467008-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A40972886-40972915&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGTAASRAAHSHGVTLATLPYSR Same 532686 chr19:40466979-40467008- 35468 35468 10463 0 555 40458139 40467303 841 841;9776;45931;47832;50410;51155;58712 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:40458139-40467303&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 1.15384615385 -7.42032 0.7309 -10.27962 2.8593 0.0235256098219 0.49635357625 31195 868 868;6935;16896;20165;31195;46951;56302 -10.71082 0.2973 -10.49686 -0.21396 0.00540247608929 0.294824418739 32765 3101 3101;8091;23506;32765;33228;42442;52654 0.0 0.0 ENST00000352632.7 AntiUTR5intron coding exon(s) BLVRB retained intron CDS 46000 574594 chr6:34237650-34237679- NoOverlap chr6 34237650 34237679 - 3.6564298695 10 0.237148088808 2.36571002007 1.29071984943 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34237649;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237650-34237679-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34237650-34237679&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0238372983471 0.00959888267327 0.314365350899 34205427 34205456 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34205426;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237650-34237679-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34205427-34205456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQRERPPREVRR None NA NA 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.9 1.36363636364 -2.23037 0.3233 -2.97179 0.74142 0.0220206282552 0.306828015173 31808 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -1.22811 0.2275 -3.20817 1.98006 -0.0198394933298 0.398195003567 47951 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.22052145693 chr22:20243406-20243684- ENST00000311487.9,ENST00000478214.1 AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000186577 46005 546347 chr21:8394363-8394467+ NoOverlap chr21 8394363 8394467 + 1.56745428528 35 0.175054986975 1.54798285259 0.0194714326944 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8394362;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394363-8394467%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8394363-8394467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0242877473152 0.00959460006391 0.350335379096 154747 154851 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;154746;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394363-8394467%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A154747-154851&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPALCTHRPSLLPIGWFSEALGSAPPGSAHGPGGALRRRSNLTI Same 547764 chr21:8394363-8394467+ 44135 44135 1870 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.695238095238 1.1036036036 -1.08748 0.267 -1.79539142857 0.707911428571 -0.0114594721694 0.438574673248 48091 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -2.489 0.2242 -4.97629714286 2.48729714286 -0.0178665390205 0.567548654818 46449 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.254392560596 chr8:144522475-144523409- ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 46006 546409 chr21:8438573-8438677+ NoOverlap chr21 8438573 8438677 + 1.56745428528 35 0.175054986975 1.54798285259 0.0194714326944 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8438572;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8438573-8438677%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8438573-8438677&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0242877473152 0.00959460006391 0.350335379096 154747 154851 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;154746;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8438573-8438677%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A154747-154851&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPALCTHRPSLLPIGWFSEALGSAPPGSAHGPGGALRRRSNLTI Same 547822 chr21:8438573-8438677+ 44136 44136 1870 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.695238095238 1.1036036036 -1.38654857143 0.2937 -1.81560857143 0.42906 -0.0174427786876 0.409997987641 52344 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -2.78226 0.229 -3.44135714286 0.659097142857 -0.0357931855307 0.487569403612 62078 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 not annotated LSU-rRNA_Hsa 46017 581264 chr7:65770455-65770517- NoOverlap chr7 65770455 65770517 - 2.98270469478 21 0.181750209812 1.20765713095 1.77504756384 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;65770454;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A65770455-65770517-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A65770455-65770517&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0127280229273 0.00956960024812 0.484152736001 65235442 65235504 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;65235441;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A65770455-65770517-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A65235442-65235504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASTSQRQLQPWPRTRLS*AWVCAPPNTSPSHVPGTSR Same 582218 chr7:65770455-65770517- 45108 45108 909 6 22043 65770455 65770837 43654 43654;46017;49173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:65770455-65770837&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.714285714286 0.51012145749 5.68727619048 0.6043 0.497647619048 5.18962857143 0.159942007071 0.770266221624 10897 2266 2266;10897;37942 6.19254285714 0.2645 0.765238095238 5.4273047619 0.129541457989 0.623669904944 9173 3745 3745;9173;72444 0.69207637321 chr7:56116021-56116314- 0.63870807021 chr7:56116021-56116314- ENST00000633579.1 NC not annotated putative regulatory region 46019 478480 chr10:100877208-100877246+ NoOverlap chr10 100877208 100877246 + 5.7348538683 13 0.806393530175 3.96367684694 1.77117702136 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100877207;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100877208-100877246%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100877208-100877246&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.113692735944 0.0095584269531 0.375814431377 102636965 102637003 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102636964;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100877208-100877246%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102636965-102637003&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KISWYRPVIWTHATLLAGR Same 480375 chr10:100877208-100877246+ 44246 44246 1773 0 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.512820512821 0.787878787879 -0.337584615385 0.9706 -5.62911538462 5.29153076923 0.00958396474352 0.702348059423 36974 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 -14.4108461538 0.8647 -18.0854769231 3.67463076923 -0.0437106919565 0.42690777 67901 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 46047 547246 chr21:8436229-8436291- NoOverlap chr21 8436229 8436291 - 1.87770476866 21 0.175210628999 -1.0176952091 2.89539997776 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436228;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436229-8436291-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436229-8436291&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0373287114206 0.00950527201046 0.640162954292 152403 152465 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152402;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436229-8436291-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152403-152465&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HTTAKGGPTEAGRRARPRPGRGTATGAEAPAR Same 548649 chr21:8436229-8436291- 42822 42822 3225 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.873015873016 1.00265251989 3.72467142857 0.286 1.12108095238 2.60359047619 0.023962145607 0.547699427088 31029 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 5.95747619048 0.2695 -1.36414761905 7.32162380952 0.166786874202 0.702543137863 7275 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.21253287994 chr12:48996740-48998666- not annotated SSU-rRNA_Hsa 46098 473183 chr1:90835300-90835332- NoOverlap chr1 90835300 90835332 - 6.27592726187 11 0.917659543478 2.35520896587 3.92071829601 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90835299;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835300-90835332-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90835300-90835332&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0737071230741 0.00936874166834 0.622867850443 91300857 91300889 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91300856;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835300-90835332-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91300857-91300889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETTRQDQSDAGSQTVFLYFIK Same 475062 chr1:90835300-90835332- 44564 44564 1534 0 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.636363636364 0.6 3.18976363636 1.0 -0.293118181818 3.48288181818 0.0655400664193 0.527517237754 20366 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -5.20991818182 0.8607 -6.08918181818 0.879263636364 -0.0443420963855 0.358911352184 68327 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 46131 479644 chr10:129871132-129871194+ NoOverlap chr10 129871132 129871194 + 3.87471908615 21 0.920630560914 2.82847629275 1.0462427934 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129871131;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129871132-129871194%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129871132-129871194&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.140777299223 0.00928089035158 0.379995869686 131669396 131669458 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131669395;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129871132-129871194%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131669396-131669458&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPAAWIQLSLLHKPNRITALGMQIASVLQAGCWAGLAEGLNR Same 481549 chr10:129871132-129871194+ 45235 45235 896 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.673796791444 -1.03643333333 0.9674 0.219614285714 -1.25604761905 -0.0428755234406 0.215116884671 68158 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -8.04223333333 0.8855 -6.24064285714 -1.80159047619 -0.046530653165 0.310882008138 69674 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 46206 547271 chr21:8439699-8439767- NoOverlap chr21 8439699 8439767 - 3.44895219803 23 0.202584082186 1.2327522156 2.21619998243 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439698;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439699-8439767-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439699-8439767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00253138482437 0.00907572398725 0.556095494533 155873 155941 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155872;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439699-8439767-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155873-155941&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEALPGAARPPPPRPRGEGVASGRPDETANGTGLR Same 548674 chr21:8439699-8439767- 45251 45251 955 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.782608695652 0.575 -1.76990434783 0.259 -2.98267391304 1.21276956522 0.00077885691567 0.42429265335 41122 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -0.291404347826 0.3108 -3.60347391304 3.31206956522 0.0289613951652 0.549217296464 24067 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0796852723049 chr7:6058966-6059083- not annotated SSU-rRNA_Hsa 46226 574579 chr6:34235179-34235205- NoOverlap chr6 34235179 34235205 - 7.63696664241 9 0.61906869103 2.14994449086 5.48702215155 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34235178;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34235179-34235205-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34235179-34235205&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0189485883066 0.00901893878384 0.757964329246 34202956 34202982 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34202955;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34235179-34235205-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34202956-34202982&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGGAACPFVWWVGVGRVDRAAPSIFVPWAR Same 575611 chr6:34235179-34235205- 50147 50147 -3921 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.740740740741 1.125 4.27468888889 0.8035 4.09925555556 0.175433333333 -0.0207747416804 0.225520303435 54680 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 2.76514444444 0.335 0.390755555556 2.37438888889 -0.0182615407289 0.402216082997 46759 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.128579335847 chr3:52221217-52224312- protein-coding gene protein-coding gene ENSG00000186577 46264 557654 chr3:181535087-181535146- NoOverlap chr3 181535087 181535146 - 3.62005002201 20 0.900007629511 0.752114987373 2.86793503463 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;181535086;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A181535087-181535146-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A181535087-181535146&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0595733972211 0.00894188706351 0.614879959984 181252875 181252934 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;181252874;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A181535087-181535146-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A181252875-181252934&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PLEIGGENLNLQHNAVLLKPYHFHFPCVCCLTVNGFEKEWLVLK Same 558625 chr3:181535087-181535146- 45822 45822 442 0 19289 181534923 181535146 35860 35860;46264;72305 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:181534923-181535146&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.0 0.495645 1.0 0.37337 0.122275 0.0128975484859 0.318824024618 35565 10762 10762;35565;68340 -2.81143 0.838 -5.63769 2.82626 0.0217875777009 0.505615095418 26388 8328 8328;26388;66978 0.0 0.0 ENST00000470817.1,ENST00000460739.5 NCintron,AntiNCintron not annotated potentially spurious 46311 560795 chr4:575540-575593- NoOverlap chr4 575540 575593 - 2.28214445048 18 0.218257419699 0.513116725617 1.76902772486 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;575539;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575540-575593-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A575540-575593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0381249091498 0.0088067477461 0.465940797472 569329 569382 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;569328;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575540-575593-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A569329-569382&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTACPRGRQVRAPARPRAQPPARPR Same 561783 chr4:575540-575593- 44265 44265 2046 0 477 574887 576356 703 703;6245;31841;46311;49193;54444;54931;56343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:574887-576356&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 0.777777777778 -0.949605555556 0.2773 -0.804483333333 -0.145122222222 0.0070171132363 0.284237866099 38104 1278 1278;5393;22990;30652;31516;37018;38104;57044 -19.2631222222 0.3864 -12.1507055556 -7.11241666667 0.0472309887758 0.0969461136808 19289 1826 1826;3252;19289;35804;46734;55036;61815;71601 0.0 0.158258363482 chr2:218403232-218403417+ protein-coding gene protein-coding gene ENSG00000273238 46375 547239 chr21:8435702-8435809- NoOverlap chr21 8435702 8435809 - 2.01934160804 36 0.203545179421 -1.35693054646 3.37627215451 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8435701;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8435702-8435809-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8435702-8435809&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0115810603537 0.00867135578238 0.796661173677 151876 151983 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;151875;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8435702-8435809-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A151876-151983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRPRPGHTRGASPPPAAPRGTRGGRPALGDPRGCPHHRRRSRGR Same 548642 chr21:8435702-8435809- 39919 39919 6456 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.87962962963 1.12909090909 0.762219444444 0.2402 -1.78359722222 2.54581666667 0.0190265506114 0.633108446486 32986 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 5.85340833333 0.217 -0.389866666667 6.243275 0.203817906579 0.737333146899 6136 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.187598157868 chr12:48996740-48998666- ENST00000616418.1 AntiNC not annotated SSU-rRNA_Hsa 46415 508666 chr15:43564090-43564155- NoOverlap chr15 43564090 43564155 - 3.65032723275 22 0.845114685421 2.47508184476 1.17524538799 ENST00000381879.8,ENST00000381885.5,ENST00000396923.7,ENST00000420765.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;43564089;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A43564090-43564155-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A43564090-43564155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132621856206 0.00855716396662 0.407028453839 43856288 43856353 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;43856287;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A43564090-43564155-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A43856288-43856353&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALVCPGRKTIFCVVCKASD*RYVCF Same 510390 chr15:43564090-43564155- 46151 46151 264 5 526 43564090 43569338 786 786;46415 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:43564090-43569338&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.484848484848 1.81176470588 -2.06188636364 0.9997 -2.09562727273 0.0337409090909 -0.0466696427391 0.318514973189 69909 2484 2484;69909 -6.50844545455 0.935 -9.38131818182 2.87287272727 -0.0107317337806 0.508209129483 41387 3794 3794;41387 0.0 0.154857550991 chr5:103187314-103187376+ ENST00000381879.8,ENST00000334933.8,ENST00000488490.1 CDS,CDSintron,NCintron coding exon(s) PPIP5K1 cassette exon 46424 484838 chr11:64234684-64234749+ NoOverlap chr11 64234684 64234749 + 3.56658178771 22 0.37276819465 0.753581778824 2.81300000889 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64234683;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64234684-64234749%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64234684-64234749&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00781280751941 0.00854249300798 0.625860444858 64002156 64002221 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64002155;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64234684-64234749%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64002156-64002221&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AREGAAEESPPAPGPRPPRPGPR Same 486785 chr11:64234684-64234749+ 44752 44752 1672 0 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.939393939394 0.970588235294 0.56865 0.4067 -1.91121818182 2.47986818182 -0.0163772407911 0.540539949301 51598 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 -4.35256818182 0.2324 -5.03594090909 0.683372727273 -0.0379702634967 0.424874398836 63722 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.251537535387 chr19:4224428-4224505+ ENST00000309422.6 UTR5 under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 46429 589000 chr9:40500639-40500782+ NoOverlap chr9 40500639 40500782 + 1.26740208082 48 0.139299610895 -1.04821663784 2.31561871866 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;40500638;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A40500639-40500782%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A40500639-40500782&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0326605436896 0.00852051401746 0.708754528726 42856289 42856146 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;42856288;-142;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A40500639-40500782%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A42856289-42856146&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FVFLQLPIVDKIRTIAQAVYGAKDIELCPEAQVKIDRYTQQVKVVLLGEK Same 589944 chr9:40500639-40500782+ 39743 39743 6686 0 20235 40500639 40503286 38203 38203;46429 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:40500639-40503286&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.283743842365 3.90901875 0.5442 -1.5896125 5.49863125 0.309674188688 0.939166330334 5404 849 849;5404 22.5165625 0.7889 -0.654102083333 23.1706645833 1.03320705774 1.04309114545 580 Best 580 580;1800 0.768561804026 chr6:151034493-151034600+ 0.662128170686 chr6:151034493-151034600+ ENST00000412301.6 NC pseudogene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like (MTHFD1L) pseudogene (ENSG00000184906) 46442 547171 chr21:8394898-8394999- NoOverlap chr21 8394898 8394999 - 1.55606178501 34 0.162719516738 0.281697081292 1.27436470372 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8394897;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394898-8394999-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8394898-8394999&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0274743643106 0.00850270160393 0.5127153156 155287 155388 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155286;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394898-8394999-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155287-155388&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASGAVPGGAERRGGGDGNPAGPEDGEPARRGRTTGPGGEEGTETPRPAATPPR Same 548576 chr21:8394898-8394999- 43144 43144 3298 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.872549019608 1.24126984127 3.38068529412 0.2535 -1.94984411765 5.33052941176 0.0930372209049 0.874998514493 16644 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 5.66749411765 0.3393 -2.63777941176 8.30527352941 0.36244320353 0.811280351322 4160 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0467397913322 chr12:48999079-48999287- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 46443 547264 chr21:8439113-8439214- NoOverlap chr21 8439113 8439214 - 1.55606178501 34 0.162719516738 0.281697081292 1.27436470372 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439112;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439113-8439214-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439113-8439214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0274743643106 0.00850270160393 0.5127153156 155287 155388 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155286;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439113-8439214-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155287-155388&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASGAVPGGAERRGGGDGNPAGPEDGEPARRGRTTGPGGEEGTETPPDPPR Same 548667 chr21:8439113-8439214- 43145 43145 3298 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.872549019608 1.24126984127 0.669782352941 0.2777 -2.55710588235 3.22688823529 0.0179744384281 0.685216503645 33398 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 7.58018823529 0.3569 5.49583529412 2.08435294118 0.228408420981 0.553262435905 5579 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.131547363497 chr17:81127792-81127910- not annotated SSU-rRNA_Hsa 46634 483250 chr11:1100753-1100782+ NoOverlap chr11 1100753 1100782 + 6.74048007727 10 0.32429999237 0.27671007514 6.46377000213 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1100752;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1100753-1100782%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1100753-1100782&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.023384790769 0.00805889725103 0.88184719442 1094661 1094690 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1094660;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1100753-1100782%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1094661-1094690&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CATSQPSLVSPALTGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTPSIIR Same 485180 chr11:1100753-1100782+ 46353 46353 281 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.07142857143 13.73673 0.5644 0.58817 13.14856 0.221944681962 1.00749544279 7903 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 18.61743 0.3765 3.85474 14.76269 0.346056986943 0.831027372109 4254 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.0 0.126731028377 chr12:11392827-11393977- ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 46687 547191 chr21:8396469-8396597- NoOverlap chr21 8396469 8396597 - 2.79053258229 43 0.206888561234 1.65730463835 1.13322794394 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8396468;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396469-8396597-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8396469-8396597&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0142732635876 0.00794203730753 0.535648035211 156862 156990 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156861;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396469-8396597-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156862-156990&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAAASRRRARDGGRHRGVPRVAAGDTRTPAPRPRARPGGPRGGLPAPADAPR Same 548595 chr21:8396469-8396597- 44897 44897 1790 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.891472868217 1.25318761384 0.884679069767 0.2364 -1.55554651163 2.4402255814 0.0270139874911 0.651352125519 29877 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 3.01095813953 0.2814 -0.353793023256 3.36475116279 0.133396691378 0.637886493307 8918 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0885757590115 chr12:56599129-56599358- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 46688 547287 chr21:8440688-8440816- NoOverlap chr21 8440688 8440816 - 2.79053258229 43 0.206888561234 1.65730463835 1.13322794394 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8440687;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440688-8440816-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8440688-8440816&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0142732635876 0.00794203730753 0.535648035211 156862 156990 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156861;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440688-8440816-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156862-156990&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAAASRRRARDGGRHRGVPRVAAGDTRTPAPRPRARPGGPRGGLPAPADAPR Same 548690 chr21:8440688-8440816- 44898 44898 1790 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.891472868217 1.25318761384 1.44014651163 0.2548 -1.8781372093 3.31828372093 0.0484594007993 0.737956995924 23509 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 8.90693255814 0.3348 3.0644744186 5.84245813953 0.420084311056 0.738787022975 3859 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0220179895085 chr19:1042662-1042826+ not annotated SSU-rRNA_Hsa 46742 546389 chr21:8401533-8401715+ NoOverlap chr21 8401533 8401715 + 2.08498031457 61 0.208103541219 0.799480295084 1.28550001948 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8401532;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401533-8401715%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8401533-8401715&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0213715191122 0.00777325476198 0.599780479513 117970 118152 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;117969;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401533-8401715%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A117970-118152&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTAGSDIWCMCLAEEPMGRSYHLWDYD*TPLSQNPAQAERYGSAAEPRLASDSRSPACPRRRAAPPLHAPR Same 547802 chr21:8401533-8401715+ 42909 42909 3833 23 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.661202185792 0.850464734828 0.0293 0.0848 -1.22648688525 1.25578688525 0.00973936574834 0.547416499016 36915 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -0.604693442623 0.0762 -1.82167540984 1.21698196721 -0.0423483944618 0.561019550233 66915 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.208709788968 chr19:44649809-44650105+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 46779 547224 chr21:8402078-8402170- NoOverlap chr21 8402078 8402170 - 2.13423556913 31 0.17609452718 -0.474396793592 2.60863236272 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8402077;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8402078-8402170-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8402078-8402170&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0175225172824 0.00769138957368 0.672715467331 118515 118607 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118514;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8402078-8402170-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118515-118607&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAPAVNGEEAGTEEAGRADRGRAPSPPHPHHHARGRR Same 548626 chr21:8402078-8402170- 42681 42681 4098 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.817204301075 0.96875 0.274380645161 0.0976 -1.42963225806 1.70401290323 0.022900504132 0.525529095483 31428 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 2.18299677419 0.1636 -1.94002903226 4.12302580645 0.0345523883709 0.628965926788 22411 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.400179269155 chr12:56609736-56609937- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 46795 547254 chr21:8436630-8436728- NoOverlap chr21 8436630 8436728 - 1.97701512684 33 0.168507228384 -0.274021202868 2.2510363297 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436629;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436630-8436728-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436630-8436728&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0201566476145 0.00764951288348 0.638029353733 152804 152902 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152803;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436630-8436728-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152804-152902&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARGRRPGPVGPGRGAANRTPQPPAPHATRPPGPR Same 548657 chr21:8436630-8436728- 42775 42775 4020 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.868686868687 0.964285714286 1.53194545455 0.2089 1.31593939394 0.216006060606 0.0135847388612 0.405620124854 35280 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 4.59475757576 0.1929 2.89233333333 1.70242424242 0.051613378103 0.533605842546 18444 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.361526402099 chr1:16048504-16048582+ not annotated SSU-rRNA_Hsa 46797 586627 chr8:48556218-48556286- NoOverlap chr8 48556218 48556286 - 3.63790008296 23 0.705055712016 2.44418694532 1.19371313764 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;48556217;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A48556218-48556286-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A48556218-48556286&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0988671199458 0.00764717479639 0.417684957153 49468778 49468846 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;49468777;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A48556218-48556286-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A49468778-49468846&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WASEARQSGPEQLRSRGRPTGTRKGAR Same 587568 chr8:48556218-48556286- 50668 50668 -3871 0 22920 48556218 48556379 Best 46797 46797;49953 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:48556218-48556379&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.914772727273 0.150282608696 0.8087 2.40597391304 -2.25569130435 -0.0364384788542 0.154358511871 64558 41550 41550;64558 -2.97123478261 0.7227 -2.70936521739 -0.261869565217 -0.0044558006397 0.394779062079 37700 35573 35573;37700 0.0 0.0 ENST00000524011.1,ENST00000522575.1 NC,AntiNCintron not annotated potentially spurious 46881 546358 chr21:8395897-8395974+ NoOverlap chr21 8395897 8395974 + 2.30526146235 26 0.181266616195 0.875923121491 1.42933834086 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395896;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395897-8395974%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395897-8395974&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0183257724613 0.00744952703937 0.481346026061 156287 156364 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156286;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395897-8395974%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156287-156364&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPSVPLSADPAASALLLPPRPPLPPPPAGPAWSRVGWRGGEGGAPG Same 547771 chr21:8395897-8395974+ 44589 44589 2292 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.858974358974 0.764705882353 -1.28169230769 0.2203 1.18069230769 -2.46238461538 0.00347464650492 0.149174283842 39764 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 0.854911538462 0.287 4.98072692308 -4.12581538462 -0.0268620468602 0.263027795642 54236 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.154532046957 chr16:376544-376812- ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 46882 546417 chr21:8440113-8440190+ NoOverlap chr21 8440113 8440190 + 2.30526146235 26 0.181266616195 0.875923121491 1.42933834086 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8440112;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440113-8440190%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8440113-8440190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0183257724613 0.00744952703937 0.481346026061 156287 156364 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156286;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440113-8440190%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156287-156364&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPSVPLSADPAASALLLPPRPPLPPPPAGPAWSRVGWRGGEGGAPG Same 547830 chr21:8440113-8440190+ 44590 44590 2292 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.858974358974 0.764705882353 -3.23256923077 0.2528 1.21545 -4.44801923077 0.0097475034991 0.0371203969955 36912 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 6.94985 0.4638 12.3714384615 -5.42158846154 0.0427152132413 0.217238863426 20322 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 not annotated LSU-rRNA_Hsa 46929 558298 chr4:3505440-3505520+ NoOverlap chr4 3505440 3505520 + 2.77552223647 27 0.191120379554 0.60494445016 2.17057778631 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;3505439;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A3505440-3505520%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A3505440-3505520&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00894403098918 0.00728914256931 0.585348642364 3507167 3507247 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;3507166;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A3505440-3505520%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A3507167-3507247&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VYFLVKHDSERHFFHTAQLPVPGRGLLRPERPLHPQPHLAQHHG Same 559274 chr4:3505440-3505520+ 44506 44506 2423 0 218 3500310 3505629 272 272;1209;38989;46929;51176 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:3500310-3505629&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.675 0.262251851852 0.0288 0.342107407407 -0.0798555555556 0.0316454880725 0.342484824293 28076 442 442;813;28076;33984;34533 7.73528148148 0.4489 -9.54361851852 17.2789 0.700700731328 1.03697778293 2806 393 393;793;1580;2806;42450 0.0 0.963535764074 chr17:443164-443494- coding exon(s) DOK7 3 3' coding exons 46968 547203 chr21:8397831-8397974- NoOverlap chr21 8397831 8397974 - 2.67212500485 48 0.181732725516 2.58841668504 0.083708319813 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397830;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397831-8397974-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397831-8397974&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0253869312285 0.00722386911138 0.408177535846 158235 158378 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158234;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397831-8397974-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158235-158378&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGPVPPQGDAGAPPRGRPPSRGIPRGGGRREGGERGDGSRSLGPGIRRVLLPGGL Same 548606 chr21:8397831-8397974- 46732 46732 236 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.826388888889 0.92361516035 -0.827939583333 0.2324 -0.49956875 -0.328370833333 -0.0154519648156 0.375599701711 50906 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -1.35217083333 0.3066 -1.18776041667 -0.164410416667 0.00610403996752 0.487544736133 32427 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0823994381492 chr11:1240851-1251743+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 46969 547299 chr21:8442061-8442204- NoOverlap chr21 8442061 8442204 - 2.67212500485 48 0.181732725516 2.58841668504 0.083708319813 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442060;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442061-8442204-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442061-8442204&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0253869312285 0.00722386911138 0.408177535846 158235 158378 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158234;144;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442061-8442204-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158235-158378&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDAGAPPRGRPPSRGIPRGGGRREGGERGDGSRSLGPGIRRVLLPGGL Same 548702 chr21:8442061-8442204- 46733 46733 236 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.826388888889 0.92361516035 -0.526835416667 0.2299 0.520795833333 -1.04763125 -0.0153237251861 0.31461031864 50809 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -5.0517625 0.2899 -2.48001458333 -2.57174791667 -0.0397122744117 0.376224293244 65005 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0922602235564 chr11:68908145-68908337+ not annotated SSU-rRNA_Hsa 47001 582011 chr7:100896022-100896048- NoOverlap chr7 100896022 100896048 - 7.84925561481 9 0.483122674059 4.2564222614 3.59283335341 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100896021;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100896022-100896048-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100896022-100896048&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0032383394061 0.00715569323601 0.524354728631 100493643 100493669 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100493642;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100896022-100896048-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100493643-100493669&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LALECVWAPGSPGLGSK Same 582971 chr7:100896022-100896048- 52477 52477 -5476 0 402 100882699 100896048 564 564;2139;2309;3733;10134;33066;33794;47001;47408;61791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100882699-100896048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.814814814815 0.675 -7.9293 0.7203 -19.2978666667 11.3685666667 0.0175119326679 0.977710319639 33604 1085 1085;2762;12277;14242;15089;33604;35393;48431;52932;53395 -9.19118888889 0.2781 -24.8483222222 15.6571333333 0.0298770239268 0.866874394248 23787 1829 1829;3172;9515;15507;19629;23787;40273;49567;60478;62610 0.0 0.0 ENST00000428317.5 UTR5intron pseudo-exon UFSP1 is a retrogene that has apparently evolved to use a downstream ATG, so this is 5' pseudo-exon sequence 47043 514462 chr16:56191799-56191870- NoOverlap chr16 56191799 56191870 - 3.12652912084 24 0.587150631978 0.491300070037 2.6352290508 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;56191798;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191799-56191870-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A56191799-56191870&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00747566004394 0.00705247088819 0.622120150435 56225711 56225782 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;56225710;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191799-56191870-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A56225711-56225782&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWSRSRSRQRVGWGAGWVLLPRLPEEEEAAAAEEEVEEAAAAAR Same 516114 chr16:56191799-56191870- 51145 51145 -4102 0 1286 56191313 56194112 1942 1942;3444;31465;36646;38456;47043;50502;59548;64898;65693 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:56191313-56194112&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 0.651583710407 -1.2721125 0.7523 -2.72287916667 1.45076666667 -0.0318210853959 0.453300905009 61684 5744 5744;16309;26528;60646;61684;66065;68363;69167;72514;73281 -10.5099166667 0.4623 -12.7840875 2.27417083333 -0.04244684427 0.472520156889 66974 7040 7040;17639;26908;52826;54474;57942;62845;66974;67638;71986 0.0 0.0 ENST00000262493.10 AntiUTR5 not annotated putative regulatory region 47044 527726 chr19:28608785-28608826+ NoOverlap chr19 28608785 28608826 + 3.93255712305 14 0.165778373606 -2.97779279947 6.91034992252 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28608784;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28608785-28608826%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28608785-28608826&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0118939245741 0.00705169468473 0.972378399867 29099692 29099733 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29099691;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28608785-28608826%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29099692-29099733&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLQLLEIANQVFVNRDVVSCR Same 529173 chr19:28608785-28608826+ 47153 47153 -109 0 19357 28608133 28611285 36033 36033;38545;39010;41587;43070;45508;47044;48128 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28608133-28611285&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.428571428571 0.583333333333 0.664 0.0297 0.493657142857 0.170342857143 0.0383221234769 0.280723813813 26060 Best 26060 26060;29422;36006;38223;39249;43455;47313;48514 0.664 0.0093 0.493657142857 0.170342857143 0.00256052610223 0.357310637615 34090 27094 27094;34090;60003;61081;61427;61444;64226;70401 0.0 0.0 ENST00000587961.1,ENST00000585394.1 NCintron,AntiNCintron not annotated potentially spurious 47053 562805 chr4:145762943-145763062- NoOverlap chr4 145762943 145763062 - 1.68149757273 40 0.910320057984 -1.17608494349 2.85758251622 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;145762942;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A145762943-145763062-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A145762943-145763062&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0817421316675 0.00702753857601 0.751707433708 146684095 146684214 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;146684094;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A145762943-145763062-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A146684095-146684214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLCVHLTWEWALYFSRVHSSVS*GSKANGELGAEEAVHGALGCVGLC Same 563801 chr4:145762943-145763062- 44737 44737 2316 19 216 145760752 145763106 266 266;24988;47053;73636 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:145760752-145763106&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.558333333333 0.666666666667 -1.0616 0.9855 -1.9860325 0.9244325 0.021725113162 0.474415498455 31923 268 268;7199;31923;70489 -4.2014925 0.3802 -7.805495 3.6040025 0.0378160427244 0.626802603381 21541 626 626;10893;21541;65202 0.0 0.0 ENST00000503462.1,ENST00000379448.8,ENST00000510096.1 CDSintron,UTR3intron,AntiNCintron pseudo-exon ZNF827 has pseudo repeats downstream of the STOP codon. 47106 547249 chr21:8436353-8436493- NoOverlap chr21 8436353 8436493 - 1.68784680019 47 0.163864038868 -0.548823381992 2.23667018219 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436352;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436353-8436493-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436353-8436493&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0223493365244 0.00688421343628 0.697674332704 152527 152667 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152526;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436353-8436493-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152527-152667&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARPAPAGGGEAGTALRPPRGAAPTSGRRARGGPRCPARGQSRRAAAAPAHRSGRGPGARPKPGSEPR Same 548652 chr21:8436353-8436493- 40839 40839 6267 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.872340425532 1.12023305085 1.6954106383 0.255 -1.5033 3.1987106383 0.0607422492716 0.741251131849 21124 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 5.38175531915 0.2229 1.94314468085 3.4386106383 0.151999939399 0.650527734835 7924 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.174201120285 chr12:48996740-48998666- not annotated SSU-rRNA_Hsa 47108 529176 chr19:51690916-51690978+ NoOverlap chr19 51690916 51690978 + 1.91220481197 21 0.388762820303 1.26640957026 0.645795241708 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51690915;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51690916-51690978%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51690916-51690978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0521325028345 0.00687524153378 0.348762500031 52194169 52194231 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52194168;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51690916-51690978%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52194169-52194231&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GISEILGFPSPLTLLLRPQAAPGHAGNPGLGSGPGWCGGVGAGAASSLPLPPHLGLTLAPA Same 530635 chr19:51690916-51690978+ 46089 46089 1019 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.761904761905 0.381818181818 -2.0974047619 0.7326 -1.37524285714 -0.722161904762 -0.0360391194297 0.254305646275 64321 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 -7.87673809524 0.3827 -8.34312380952 0.466385714286 -0.040950568027 0.398557159167 65937 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.21660368389 chr1:46341844-46343802+ ENST00000602324.1 AntiNCintron protein-coding gene protein-coding gene ENSG00000182310 47118 547324 chr21:8446337-8446399- NoOverlap chr21 8446337 8446399 - 1.64126201267 21 0.184680668636 -1.30416504443 2.94542705709 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8446336;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446337-8446399-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8446337-8446399&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.045750273112 0.00686114462409 0.648081360814 118545 118607 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118544;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446337-8446399-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118545-118607&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAPAVNGEEAGTEEAGRADRGRAPSPPPPPPRPR Same 548727 chr21:8446337-8446399- 43252 43252 3866 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.809523809524 0.978260869565 1.16595714286 0.116 1.0691047619 0.0968523809524 0.024416762177 0.323815426629 30826 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 4.04725714286 0.1664 4.28681428571 -0.239557142857 -0.00481958901784 0.3874957812 37916 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 47155 549324 chr22:50674240-50674539+ NoOverlap chr22 50674240 50674539 + 1.91005701043 100 0.186471503777 1.20614096619 0.703916044235 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50674239;300;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674240-50674539%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50674240-50674539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0218782898866 0.00677058659149 0.51061623016 51112668 51112967 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51112667;300;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674240-50674539%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51112668-51112967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPPPNPVTAPQTPAPWLGPRPPHTPPAPTRDPASNPPALALSPPGPRLRRSPLATPASLPSQAPSPRRPRPRGRQAPS*AGADAAEPRRRRRRRRPCGAPGAAVPRAGPGPGPPRPPPAQRGRR Same 550696 chr22:50674240-50674539+ 45002 45002 2153 45 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.853333333333 0.866873065015 -1.402927 0.257 -1.136227 -0.2667 -0.0348478453796 0.35070242727 63580 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -5.78162 0.3465 -6.004038 0.222418 0.00526770205979 0.509559060354 32823 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.11475960117 chr3:49014825-49015288+ ENST00000414786.6 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 47167 524459 chr18:47602000-47602035+ NoOverlap chr18 47602000 47602035 + 5.84550843636 12 0.848063375804 2.49609990666 3.3494085297 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;47601999;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47602000-47602035%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A47602000-47602035&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0830699930862 0.00673982764074 0.568581895035 45128371 45128406 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;45128370;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47602000-47602035%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A45128371-45128406&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSLGGPIMHTAWGQQRPALRLGGPLASHSWNARPVLVLYR Same 525895 chr18:47602000-47602035+ 44000 44000 3167 0 9000 47594360 47602035 13245 13245;26978;27676;41264;47167;69881;72567 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:47594360-47602035&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.321428571429 3.48741666667 0.979 -1.78196666667 5.26938333333 0.112460336573 0.689947963954 14639 6593 6593;11265;14639;28210;30783;58565;63900 -6.19660833333 0.636 -15.1948166667 8.99820833333 0.00389132536582 0.686713455056 33451 7430 7430;14557;25346;33451;40777;53603;69649 0.0 0.0 not annotated potentially spurious 47205 530314 chr19:15432464-15432535- NoOverlap chr19 15432464 15432535 - 4.44382918626 24 0.244703212024 3.41761251291 1.02621667335 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15432463;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432464-15432535-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15432464-15432535&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00244499236484 0.00667389818477 0.398301594914 15543275 15543346 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15543274;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432464-15432535-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15543275-15543346&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPHPRRRRHHHRHRHRRRGTGPRPSRSR Same 531777 chr19:15432464-15432535- 48139 48139 -934 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.861111111111 1.10526315789 0.460870833333 0.3043 -0.885966666667 1.3468375 -0.00311786662754 0.451862467258 43121 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -3.5560375 0.2539 -4.8668625 1.310825 -0.0314828506604 0.464123353689 58453 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.141219627345 chr19:58350370-58350651- ENST00000599686.3,ENST00000263381.11,ENST00000599910.6 UTR5,CDSintron,UTR5intron coding exon(s) WIZ 2 cassette exons 47228 547290 chr21:8441092-8441118- NoOverlap chr21 8441092 8441118 - 4.75604450703 9 0.172996617583 1.20815549956 3.54788900746 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441091;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441092-8441118-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441092-8441118&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00872199894283 0.00660672785441 0.573798467747 157266 157292 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157265;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441092-8441118-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157266-157292&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SADGRTESRRPDRPPDAPSGDGPGEGER Same 548693 chr21:8441092-8441118- 50667 50667 -3439 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 1.47272727273 4.89122222222 0.1922 4.45207777778 0.439144444444 0.0222587149103 0.242344508719 31701 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 9.42775555556 0.2786 5.30943333333 4.11832222222 0.0213046320814 0.456293781901 26530 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0818452246881 chr19:19227281-19228639+ not annotated SSU-rRNA_Hsa 47261 547318 chr21:8445977-8446045- NoOverlap chr21 8445977 8446045 - 2.13106088713 23 0.248728027838 1.43024347852 0.700817408607 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8445976;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445977-8446045-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8445977-8446045&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0309580613902 0.00654775559107 0.366724433419 118183 118251 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118182;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445977-8446045-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118183-118251&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRPPFQPRPVSQDEGHSAPDPGPGARRGTRPPAR Same 548721 chr21:8445977-8446045- 45264 45264 1997 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.811594202899 1.15741935484 1.76647826087 0.082 0.914569565217 0.851908695652 0.0322709337911 0.403858329249 27861 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 2.48642173913 0.1059 2.23691304348 0.249508695652 -0.0202157732796 0.420484294623 48271 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 ENST00000612173.1 AntiNC not annotated SSU-rRNA_Hsa 47262 547199 chr21:8397527-8397658- NoOverlap chr21 8397527 8397658 - 2.80785908753 44 0.181929156523 2.58245683123 0.225402256305 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397526;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397527-8397658-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397527-8397658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0216857337835 0.00654506171516 0.413874401984 157921 158052 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157920;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397527-8397658-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157921-158052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGPPEPPSPPAFPAVPEPVAAHRRGGNAPGGGRSPVGGRSPADPTPGPARPPPHPPEPAPSGEEEEGR Different 548603 chr21:8397527-8397688- 48304 48304 -1042 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.848484848485 1.09452736318 0.663777272727 0.2481 -0.453227272727 1.11700454545 0.0097171890302 0.52542718874 36921 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -1.44613181818 0.3538 -3.42734772727 1.98121590909 0.0514023707711 0.573475437873 18482 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.133026068321 chr3:9892915-9893377+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 47266 475487 chr1:204256798-204256899- NoOverlap chr1 204256798 204256899 - 2.60806171706 34 0.877676948555 1.4467177093 1.16134400775 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204256797;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204256798-204256899-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204256798-204256899&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.124817943611 0.0065249146344 0.49438601451 204225926 204226027 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204225925;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204256798-204256899-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204225926-204226027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPARPLTSAIPFSSSMITWETGGQSLQDCSPTTTHHPPRSTIRWYVLSPLHLSQGLPAPCSTQGGAK Same 477372 chr1:204256798-204256899- 46561 46561 705 0 270 204243114 204256899 352 352;616;2254;47266 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204243114-204256899&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.558823529412 0.404761904762 -0.932947058824 1.0 -1.86938529412 0.936438235294 0.0206119962539 0.457489898578 32366 1246 1246;1477;3678;32366 -27.3134058824 0.822 -22.8176205882 -4.49578529412 0.00829413370375 0.182179642272 31464 451 451;1562;1979;31464 0.0 0.0 ENST00000272203.7 CDSintron coding exon(s) PLEKHA6 4 cassette exons 47289 538858 chr2:62098472-62098552- NoOverlap chr2 62098472 62098552 - 2.2649185285 27 0.230182910461 -2.11974817652 4.38466670502 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62098471;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62098472-62098552-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62098472-62098552&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0152674077046 0.00645731570755 0.856645858147 62325607 62325687 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62325606;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62098472-62098552-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62325607-62325687&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSDILLNSGFMQGLDKELATLIKRNNVAWASLPTSHLVNPS Same 540236 chr2:62098472-62098552- 40194 40194 7095 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.0 -0.747407407407 0.0291 -2.03934444444 1.29193703704 0.0290781141727 0.45893714091 29058 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 -0.747407407407 0.0091 -2.03934444444 1.29193703704 -0.0329763760838 0.484539343983 59756 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 47361 547250 chr21:8436376-8436618- NoOverlap chr21 8436376 8436618 - 1.74100246492 81 0.165747075119 1.17294688201 0.568055582911 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436375;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436376-8436618-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436376-8436618&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0259574940462 0.00627083202798 0.497025961836 152550 152792 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152549;243;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436376-8436618-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152550-152792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HRPATLLRRARPRGGGRPDPRPAAGRDRRPRARARGRRPRAAARRGRRSARPAGRPRRPGGEREADRGARPGDSRAVRPQRPRTGPVEGPGPGR Same 548653 chr21:8436376-8436618- 45318 45318 2043 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.880658436214 1.27447552448 2.15877530864 0.263 -1.62856666667 3.78734197531 0.166926012576 0.797267870694 10471 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 5.94383580247 0.23 1.4716037037 4.47223209877 0.204479819505 0.706896779963 6110 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.161781395608 chr12:48996740-48998666- not annotated SSU-rRNA_Hsa 47370 547253 chr21:8436629-8436727- NoOverlap chr21 8436629 8436727 - 1.76281816795 33 0.167734567002 -0.19061516993 1.95343333788 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436628;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436629-8436727-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436629-8436727&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0236074514047 0.00624937888139 0.598651898249 152803 152901 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152802;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436629-8436727-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152803-152901&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGRDRWGRGGARRTGRPNHPPPTRHDHRGPAPQTR Same 548656 chr21:8436629-8436727- 43315 43315 4055 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.868686868687 0.963764196863 3.37468787879 0.2061 -0.910660606061 4.28534848485 0.0746282368621 0.786748365407 18994 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 6.39952424242 0.1924 -0.424651515152 6.82417575758 0.195863669997 0.748515580746 6357 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.362465919776 chr1:16048504-16048582+ not annotated SSU-rRNA_Hsa 47376 476444 chr1:244048548-244048628- NoOverlap chr1 244048548 244048628 - 3.01919251349 27 0.360995114287 0.582870276438 2.43632223705 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244048547;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048548-244048628-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244048548-244048628&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00566589879909 0.0062426611618 0.619640792297 244211850 244211930 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244211849;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048548-244048628-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244211850-244211930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAAGPGGGAGAGGGRARGRGRGGGGRTHHARTRRRRPDVPPTLSPPLSFPCLPPSGR Same 478338 chr1:244048548-244048628- 45067 45067 2309 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.827160493827 0.91181988743 1.42188518519 0.4333 -0.430188888889 1.85207407407 -0.013695085937 0.52182014351 49667 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -3.44952962963 0.3789 -4.1869 0.73737037037 -0.0142551264298 0.45581837743 43775 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0729450629753 chr19:40369908-40370011+ not annotated putative regulatory region 47388 546378 chr21:8398150-8398617+ NoOverlap chr21 8398150 8398617 + 1.76270127841 156 0.182453592032 1.87236798345 -0.109666705036 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398149;468;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398150-8398617%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398150-8398617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0255649421407 0.00621312089322 0.561477356876 158553 159020 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158552;468;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398150-8398617%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158553-159020&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHARVPRRGGRRSERTGSAATSATHPTRLETRTKESNTCASRGLARKPPWRNEGEGRRARRPRWDPEASPVRRGRTTGPSRPPRRGGGARAHVLGPERW*TMPGQGEARGNSGGGP*RS*RANRSSDLGIGAKD*SNHLVAGSLRSFPQDSWRSRRPDAPPPR Same 547791 chr21:8398150-8398617+ 67134 67134 -19746 56 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.673076923077 1.13804004215 -1.3298275641 0.266 -1.3814025641 0.051575 0.0101782343343 0.640105180973 36712 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -2.82556025641 0.2942 -2.24889487179 -0.576665384615 0.028448144236 0.513638218381 24223 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0576999108985 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 47389 546439 chr21:8442379-8442846+ NoOverlap chr21 8442379 8442846 + 1.76270127841 156 0.182453592032 1.87236798345 -0.109666705036 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442378;468;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442379-8442846%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442379-8442846&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0255649421407 0.00621312089322 0.561477356876 158553 159020 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158552;468;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442379-8442846%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158553-159020&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHARVPRRGGRRSERTGSAATSATHPTRLETRTKESNTCASRGLARKPPWRNEGEGRRARRPRWDPEASPVRRGRTTGPSRPPRRGGGARAHVLGPERW*TMPGQGEARGNSGGGP*RS*RANRSSDLGIGAKD*SNHLVAGSLRSFPQDSWRSRRPDAPPPR Same 547852 chr21:8442379-8442846+ 67135 67135 -19746 56 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.673076923077 1.13804004215 -0.937462179487 0.2706 -1.26123525641 0.323773076923 0.0264211422613 0.659540828754 30082 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -3.05089871795 0.3056 -2.88434871795 -0.16655 0.0391157497034 0.526500887213 21235 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0911805598472 chr19:44649809-44650105+ not annotated LSU-rRNA_Hsa 47408 582003 chr7:100882958-100883086- NoOverlap chr7 100882958 100883086 - 2.88000698907 43 0.709328407863 2.37162098774 0.508386001337 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100882957;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100882958-100883086-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100882958-100883086&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.185895437758 0.00617316739732 0.448897500092 100480579 100480707 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100480578;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100882958-100883086-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100480579-100480707&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IFTLAAWSNRAQDLTSGAQGPCWLVGHRLAPGWAPGRDAHAGLRSGA Same 582963 chr7:100882958-100883086- 55039 55039 -7631 0 402 100882699 100896048 564 564;2139;2309;3733;10134;33066;33794;47001;47408;61791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100882699-100896048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.705426356589 0.623791102515 0.762160465116 0.953 -0.0818906976744 0.844051162791 0.107638969837 0.497567599352 15089 1085 1085;2762;12277;14242;15089;33604;35393;48431;52932;53395 -0.849576744186 0.4216 -1.90916046512 1.05958372093 0.0678928184563 0.532291842784 15507 1829 1829;3172;9515;15507;19629;23787;40273;49567;60478;62610 0.0 0.0 ENST00000423692.5,ENST00000611405.4 AntiNC,AntiCDSintron pseudo-exon UFSP1 is a retrogene that has apparently evolved to use a downstream ATG, so this is 5' pseudo-exon sequence 47426 546383 chr21:8398960-8399025+ NoOverlap chr21 8398960 8399025 + 3.51384099302 22 0.183794918746 2.76795001057 0.745890982449 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398959;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398960-8399025%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398960-8399025&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00571291069375 0.00611258387587 0.352356321747 159363 159428 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159362;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398960-8399025%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159363-159428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WMALERRAHTRPSPAVESGRER Same 547796 chr21:8398960-8399025+ 46961 46961 465 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.742424242424 1.15789473684 1.2672 0.2436 1.03222727273 0.234972727273 0.00824075285415 0.342327680061 37558 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -2.77531363636 0.2171 -4.09625909091 1.32094545455 -0.0310177946192 0.454859447247 58046 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.253895576264 chr3:9840698-9840805- ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 47427 546444 chr21:8443189-8443254+ NoOverlap chr21 8443189 8443254 + 3.51384099302 22 0.183794918746 2.76795001057 0.745890982449 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8443188;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443189-8443254%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8443189-8443254&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00571291069375 0.00611258387587 0.352356321747 159363 159428 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159362;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8443189-8443254%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159363-159428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WMALERRAHTRPSPAVESGRER Same 547857 chr21:8443189-8443254+ 46962 46962 465 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.742424242424 1.15789473684 1.39958181818 0.2219 1.0537 0.345881818182 0.0121292262213 0.352007229439 35872 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 0.0543227272727 0.2134 1.46053636364 -1.40621363636 -0.0293703191367 0.346676691049 56541 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 not annotated LSU-rRNA_Hsa 47431 536002 chr2:175441462-175441497+ NoOverlap chr2 175441462 175441497 + 5.54435835282 12 0.972794435543 0.732525030772 4.81183332205 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;175441461;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441462-175441497%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A175441462-175441497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.01934504776 0.00611027825586 0.752959943896 176306190 176306225 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;176306189;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441462-175441497%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A176306190-176306225&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFTYPVTINTLMAFCWLLAVIMLLSNVFSAPNLLEPSAR Same 537365 chr2:175441462-175441497+ 54450 54450 -7019 0 2593 175431262 175442589 3667 3667;23940;24312;30353;42328;47431;68426;71581;72593 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:175431262-175442589&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.472222222222 0.0 0.745108333333 0.9999 1.51045833333 -0.76535 -0.0228157648459 0.196447833229 56059 9400 9400;12533;13565;26288;43072;56059;57986;61202;69104 -3.43259166667 0.9129 1.060325 -4.49291666667 -0.0427785430917 0.177559027523 67251 6205 6205;6835;9148;28284;38003;50257;61246;63121;67251 0.0 0.0 ENST00000438963.1 NCintron not annotated potentially spurious 47446 526060 chr18:56083383-56083445- NoOverlap chr18 56083383 56083445 - 3.64197613796 21 0.956099794003 1.29367606413 2.34830007383 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;56083382;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A56083383-56083445-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A56083383-56083445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0750207069537 0.00606548409036 0.555044163782 53750614 53750676 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;53750613;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A56083383-56083445-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A53750614-53750676&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DILHPSVIYIIRFPEVSPTNPGWMHCMCY Same 527504 chr18:56083383-56083445- 50358 50358 -2912 0 23054 56083383 56083445 Best 47446 47446 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:56083383-56083445&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.428571428571 0.346153846154 -0.298261904762 1.0 -1.55135714286 1.2530952381 0.0120446247693 0.421051360592 35920 Best 35920 35920 -6.45487619048 0.6917 -8.4688047619 2.01392857143 -0.0199425328207 0.466951000616 48034 Best 48034 48034 0.0 0.0 ENST00000587904.5,ENST00000382897.2,ENST00000585684.5 NC,NCintron,AntiNCintron not annotated potentially spurious 47455 547202 chr21:8397815-8397973- NoOverlap chr21 8397815 8397973 - 2.52522075457 53 0.182602699695 3.03785283779 -0.512632083218 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397814;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397815-8397973-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397815-8397973&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0292244491859 0.00604885455878 0.340499229184 158219 158377 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158218;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397815-8397973-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158219-158377&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETPARPRGGDPPRGGFPAGVGAGRGESAATGLAPSAPGFGECCCRGGCNTRGGFR Same 548605 chr21:8397815-8397973- 49210 49210 -1755 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.811320754717 0.913336663337 -0.704488679245 0.2364 1.05250943396 -1.75699811321 -0.0216651869796 0.253085964012 55265 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -4.2928245283 0.3085 0.801120754717 -5.09394528302 -0.0204847306173 0.284311657029 48480 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0753073177149 chr11:1240851-1251743+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 47456 547298 chr21:8442045-8442203- NoOverlap chr21 8442045 8442203 - 2.52522075457 53 0.182602699695 3.03785283779 -0.512632083218 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442044;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442045-8442203-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442045-8442203&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0292244491859 0.00604885455878 0.340499229184 158219 158377 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158218;159;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442045-8442203-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158219-158377&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVGGVARPPHEETPARPRGGDPPRGGFPAGVGAGRGESAATGLAPSAPGFGECCCRGGCNTRGGFR Same 548701 chr21:8442045-8442203- 49211 49211 -1755 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.811320754717 0.913336663337 -0.778735849057 0.234 1.1497 -1.92843584906 -0.0221571104208 0.237460557813 55592 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -2.20090377358 0.2873 1.91329056604 -4.11419433962 -0.0196051887712 0.327060272623 47777 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.102111921409 chr11:68908145-68908337+ not annotated SSU-rRNA_Hsa 47468 588148 chr8:143733708-143733872- NoOverlap chr8 143733708 143733872 - 2.25296544541 55 0.20581479709 1.17136365284 1.08160179257 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143733707;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143733708-143733872-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143733708-143733872&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.020447449755 0.00602858560351 0.563459357229 144815878 144816042 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144815877;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143733708-143733872-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144815878-144816042&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGLPRPQVLPGQAGGRSDGRGGGGRVNQAGRAAAGSGCRTDRTARPLGGGRLLLPLCRDPAHLAR Same 589093 chr8:143733708-143733872- 44891 44891 2577 0 276 143733703 143738234 361 361;376;47468;58180;61062 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143733703-143738234&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.812121212121 0.873417721519 0.0414854545455 0.4054 -2.17831090909 2.21979636364 0.0242297355402 0.639354625817 30909 308 308;828;30909;52884;63830 -5.56723272727 0.2908 -8.16856909091 2.60133636364 -0.0164529104909 0.603609426788 45407 720 720;3471;45407;48220;48572 0.0 0.236621297834 chr22:39995043-39995531+ ENST00000388913.3 UTR5 coding exon(s) FAM83H 5' coding extension. 47487 546436 chr21:8442294-8442371+ NoOverlap chr21 8442294 8442371 + 2.78403844856 26 0.181922167251 2.04640766749 0.737630781073 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442293;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442294-8442371%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442294-8442371&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0109628968302 0.00598732950617 0.386120547564 158468 158545 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158467;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442294-8442371%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158468-158545&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGCRARVGGRGGLSPVRPGRVAPSGPGEVLSGPR Same 547849 chr21:8442294-8442371+ 46007 46007 1480 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.858974358974 1.09756097561 -0.171365384615 0.2483 0.100523076923 -0.271888461538 3.86447761613e-05 0.319183575363 41482 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 1.12036153846 0.3278 1.94308461538 -0.822723076923 0.00561605148282 0.392330806026 32658 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 not annotated LSU-rRNA_Hsa 47496 546375 chr21:8398064-8398129+ NoOverlap chr21 8398064 8398129 + 3.41904998503 22 0.181581666979 2.95031361688 0.468736368147 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398063;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398064-8398129%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398064-8398129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00687689377626 0.0059672891268 0.318114333526 158468 158533 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158467;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398064-8398129%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158468-158533&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGCRARVGGRGGLSPVRPGRVAPSGPGGGSLGATR None NA NA 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.878787878788 1.13235294118 0.107345454545 0.255 -0.495936363636 0.603281818182 0.0044246683801 0.371984281531 39309 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 0.650236363636 0.342 1.03047727273 -0.380240909091 0.00015162975353 0.388265586288 35283 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.302226739799 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 47522 547206 chr21:8398064-8398129- NoOverlap chr21 8398064 8398129 - 3.38515000994 22 0.181581666979 3.013059123 0.37209088694 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398063;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398064-8398129-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398064-8398129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00715505565436 0.00589397525093 0.306402002264 158468 158533 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158467;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398064-8398129-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158468-158533&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARRRDPPGAHWGQSAPPPDPRAAPPPSPGR Different 548609 chr21:8398064-8398144- 46827 46827 695 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.878787878788 1.13235294118 1.69525454545 0.255 0.360781818182 1.33447272727 0.0107832880683 0.439671047423 36445 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -2.43638181818 0.342 -5.02715909091 2.59077727273 0.000987231477947 0.509058327014 34868 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.148773899074 chr3:9890723-9890811+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 47523 478915 chr10:113126838-113126873+ NoOverlap chr10 113126838 113126873 + 5.39563345909 12 0.791262938379 0.405508227646 4.99012523144 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113126837;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113126838-113126873%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113126838-113126873&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0194969269763 0.00589141423606 0.774779942102 114886597 114886632 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114886596;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113126838-113126873%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114886597-114886632&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALGSIWAQAACPRAGSGKDSAATLSR Same 480816 chr10:113126838-113126873+ 45585 45585 1938 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.75 0.989010989011 -0.651458333333 0.7931 -6.21388333333 5.562425 -0.00581462084357 0.713724018779 44606 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -9.704275 0.6961 -17.5385416667 7.83426666667 -0.0326464962798 0.618576240943 59473 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 47553 529759 chr19:5560211-5560255- NoOverlap chr19 5560211 5560255 - 3.21821328799 15 0.257410543984 2.08546001166 1.13275327633 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;5560210;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A5560211-5560255-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A5560211-5560255&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0221224562677 0.00579307282951 0.347098212327 5560222 5560266 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;5560221;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A5560211-5560255-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A5560222-5560266&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLSSGTALGPGSPARLPSEHLPNFGHLPCNSR Same 531222 chr19:5560211-5560255- 48038 48038 -485 0 1387 5560211 5567933 2076 2076;47553 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:5560211-5567933&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.416666666667 -5.68654 0.4484 -5.17931333333 -0.507226666667 0.00936322616157 0.259259845972 37063 1164 1164;37063 -5.54948 0.159 -5.87556 0.32608 -0.0192891937725 0.364528141015 47538 1646 1646;47538 0.0 0.0 ENST00000448587.5 NC protein-coding gene protein coding gene ENSG00000223573 47593 546268 chr21:8217041-8217106+ NoOverlap chr21 8217041 8217106 + 2.99060910669 22 0.197643868301 2.3352227211 0.655386385593 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8217040;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217041-8217106%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8217041-8217106&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00963067253226 0.00568312334274 0.345509349274 116513 116578 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;116512;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217041-8217106%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A116513-116578&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QGPAAAAAGPRRRGHGPPRGGPGHPGGRR Same 547681 chr21:8217041-8217106+ 46793 46793 800 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.939393939394 0.784864864865 0.0740954545455 0.0824 0.833259090909 -0.759163636364 0.0246915107948 0.258968569006 30725 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -0.175045454545 0.1337 0.878463636364 -1.05350909091 -0.0336439558728 0.360599422663 60342 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.412271724809 chr19:49854406-49854543+ ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 47609 547176 chr21:8395331-8395426- NoOverlap chr21 8395331 8395426 - 2.46469067782 32 0.197647726406 0.142362512648 2.32232816517 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395330;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395331-8395426-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395331-8395426&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00911582591432 0.00563146823072 0.640533665713 155720 155815 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155719;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395331-8395426-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155720-155815&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RAPPTRGRARTPPHRRPGVPAPTARGARHTRGR Same 548581 chr21:8395331-8395426- 43901 43901 3708 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.864583333333 1.12808460635 -1.510278125 0.2553 -3.068175 1.557896875 -0.00759412543256 0.500726697747 45641 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -1.246825 0.3342 -1.61649375 0.36966875 0.00302017248296 0.46714112601 33866 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.131964290727 chr2:25131750-25131911+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 47610 547269 chr21:8439546-8439641- NoOverlap chr21 8439546 8439641 - 2.46469067782 32 0.197647726406 0.142362512648 2.32232816517 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439545;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439546-8439641-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439546-8439641&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00911582591432 0.00563146823072 0.640533665713 155720 155815 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155719;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439546-8439641-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155720-155815&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RAPPTRGRARTPPHRRPGVPAPTARGARHTRGR Same 548672 chr21:8439546-8439641- 43902 43902 3708 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.864583333333 1.12808460635 0.7828875 0.277 -2.982525 3.7654125 0.0216130444802 0.723538657145 31966 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 8.374978125 0.4134 4.6127875 3.762190625 0.321980874506 0.614967139819 4426 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0646798689393 chr1:16047905-16048044+ not annotated SSU-rRNA_Hsa 47612 546430 chr21:8441748-8441909+ NoOverlap chr21 8441748 8441909 + 2.39400187356 54 0.182865248708 2.67806296216 -0.284061088606 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441747;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441748-8441909%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441748-8441909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0275521758498 0.00563118646487 0.372475317324 157922 158083 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157921;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441748-8441909%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157922-158083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPSSSSPEGAGSGGCGGGRAGPGVGSAGDRPPTGDRPPPGAFPPRRCAATGSGTAGKARRGRWLGGPRPSVRPSSSSPVSAPRPR Same 547843 chr21:8441748-8441909+ 48953 48953 -1341 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.851851851852 0.970921198668 0.525066666667 0.2428 0.717075925926 -0.192009259259 -0.000405044060521 0.414583111653 41703 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -4.50042962963 0.351 -4.38220925926 -0.11822037037 -0.0124851824994 0.488291421029 42511 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.165260670736 chr16:376136-376455- not annotated LSU-rRNA_Hsa 47654 547177 chr21:8395332-8395394- NoOverlap chr21 8395332 8395394 - 2.93701431013 21 0.19967956054 1.35672383649 1.58029047364 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395331;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395332-8395394-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395332-8395394&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0118228324674 0.00550244347215 0.45870806336 155721 155783 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155720;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395332-8395394-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155721-155783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAHAGASADTTPQAPGGSRPHGAGRTPHAR Same 548582 chr21:8395332-8395394- 46447 46447 1207 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.84126984127 1.01612903226 -3.73515714286 0.2475 -4.63750952381 0.902352380952 0.00756237348861 0.381039442548 37857 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -3.78738571429 0.3207 -4.3552047619 0.567819047619 -0.0292916620854 0.415709064216 56467 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.077564689508 chr3:9906961-9907100+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 47655 547270 chr21:8439547-8439609- NoOverlap chr21 8439547 8439609 - 2.93701431013 21 0.19967956054 1.35672383649 1.58029047364 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439546;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439547-8439609-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439547-8439609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0118228324674 0.00550244347215 0.45870806336 155721 155783 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155720;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439547-8439609-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155721-155783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAHAGASADTTPQAPGGSRPHGAGRTPHAR Same 548673 chr21:8439547-8439609- 46448 46448 1207 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.84126984127 1.01612903226 -6.6833047619 0.2661 -8.63294761905 1.94964285714 0.011418536707 0.459634558099 36190 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -8.21926190476 0.4193 -8.00973333333 -0.209528571429 -0.0431927906215 0.370642506832 67532 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0971729583574 chr1:16047905-16048044+ not annotated SSU-rRNA_Hsa 47686 482384 chr10:117554728-117554766- NoOverlap chr10 117554728 117554766 - 5.60137701035 13 0.800396734569 3.19240779143 2.40896921891 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117554727;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117554728-117554766-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117554728-117554766&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0957275761861 0.00542189380673 0.460619896606 119314239 119314277 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119314238;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117554728-117554766-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119314239-119314277&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FIIMRANWKVIIW Same 484311 chr10:117554728-117554766- 45631 45631 2055 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.358974358974 0.975 -0.561030769231 0.9929 -0.255669230769 -0.305361538462 -0.0342512959965 0.240738749091 63221 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -3.36006923077 0.8264 -3.21393076923 -0.146138461538 -0.0336303040932 0.336523261378 60324 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 not annotated putative regulatory region 47832 531218 chr19:40467164-40467205- NoOverlap chr19 40467164 40467205 - 5.35137853878 14 0.496132927879 2.06411438329 3.28726415549 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;40467163;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40467164-40467205-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A40467164-40467205&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0135639067299 0.00503337479732 0.590923729732 40973071 40973112 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;40973070;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40467164-40467205-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A40973071-40973112&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPARPGPAQPGSARPRRPAAQPDPHAPPR Same 532689 chr19:40467164-40467205- 49421 49421 -1589 0 555 40458139 40467303 841 841;9776;45931;47832;50410;51155;58712 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:40458139-40467303&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.809523809524 0.923076923077 0.970964285714 0.5442 -0.794221428571 1.76518571429 -0.0232033096345 0.412284088348 56302 868 868;6935;16896;20165;31195;46951;56302 2.65994285714 0.2679 -0.00636428571429 2.66630714286 0.00438644413755 0.457500782838 33228 3101 3101;8091;23506;32765;33228;42442;52654 0.0 0.0 ENST00000352632.7 AntiUTR5intron coding exon(s) BLVRB retained intron CDS 47856 571749 chr6:50093305-50093421+ NoOverlap chr6 50093305 50093421 + 2.13312308452 39 0.87767546408 0.310518001899 1.82260508262 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;50093304;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A50093305-50093421%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A50093305-50093421&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0451234755184 0.0049720701278 0.611911896945 50061018 50061134 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;50061017;117;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A50093305-50093421%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A50061018-50061134&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLNINNFCQAVDTIMADISQDAEMTAGICQQSCHSDSNKAMSGNVTVLALCSPEQ Same 572776 chr6:50093305-50093421+ 46347 46347 1509 0 15272 50093305 50093758 25810 25810;47856;68461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:50093305-50093758&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.160714285714 0.948517948718 0.9884 -0.505869230769 1.45438717949 0.150522930893 0.544404816328 11547 Best 11547 11547;40188;66555 -3.66563846154 0.8839 -4.72970512821 1.06406666667 0.0498223473421 0.515271957173 18779 Best 18779 18779;64706;70015 0.0 0.0 not annotated putative regulatory region 47871 538857 chr2:62097782-62097811- NoOverlap chr2 62097782 62097811 - 6.3970098868 10 0.230962081331 3.98382996917 2.41317991763 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62097781;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62097782-62097811-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62097782-62097811&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0142458805475 0.00493660680635 0.412065145815 62324917 62324946 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62324916;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62097782-62097811-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62324917-62324946&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFVDTSAILSVLIPT Same 540235 chr2:62097782-62097811- 53297 53297 -5426 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 1.16883116883 0.11566 0.0306 -0.31686 0.43252 0.0401784243009 0.272724307085 25524 Best 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 0.11566 0.0096 -0.31686 0.43252 0.0176475223903 0.337003804171 27790 Best 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 47923 633697 chr13:51452260-51452412+ Extension chr13 51452260 51452412 + 3.02695880012 51 0.343968572399 2.57782547074 0.449133329386 chr13:51452260-51452535+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51452259;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51452260-51452412%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51452260-51452412&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0459327377878 0.00477822063906 0.46970878529 52026396 52026548 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;52026395;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51452260-51452412%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A52026396-52026548&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SARPPARWGRGSPSPAAPAVRSPTPPPRPPSPTLPPAGRRAGVAARARSVGTFMK Same 634353 chr13:51452260-51452412+ 48870 48870 -947 0 1692 51451954 51453308 2509 2509;31159;43962;47923;61724;62277 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51451954-51453308&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.856209150327 0.874285714286 -4.93164313725 0.5642 -4.49279215686 -0.438850980392 -0.0251627347762 0.297671099082 57539 13006 13006;20772;28117;30456;57539;72100 -10.0422745098 0.3515 -10.6044862745 0.562211764706 -0.0496957551048 0.492815728295 71224 8845 8845;20580;21846;25121;49423;71224 0.0 0.105918091567 chr12:57737079-57738246- ENST00000593672.5,ENST00000486195.6,ENST00000311234.8,ENST00000469430.5 NC,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 47997 547186 chr21:8396169-8396216- NoOverlap chr21 8396169 8396216 - 3.92112495145 16 0.20951590753 1.90538127185 2.0157436796 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8396168;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396169-8396216-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8396169-8396216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00267081433445 0.00456224109382 0.461435039719 156562 156609 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156561;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396169-8396216-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156562-156609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPPPPPPHRTQHAPTADDARRRRR Different 548589 chr21:8396106-8396216- 39271 39271 8726 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.75 2.08695652174 3.3500625 0.1901 -0.33890625 3.68896875 0.030312690229 0.598093406723 28571 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 4.5326625 0.2495 0.94324375 3.58941875 0.0351599294289 0.510272679041 22250 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0 ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 47998 547279 chr21:8440388-8440435- NoOverlap chr21 8440388 8440435 - 3.92112495145 16 0.20951590753 1.90538127185 2.0157436796 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8440387;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440388-8440435-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8440388-8440435&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00267081433445 0.00456224109382 0.461435039719 156562 156609 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156561;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440388-8440435-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156562-156609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPPPPPPHRTQHAPTADDARRRRR Same 548682 chr21:8440388-8440435- 48827 48827 -829 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.75 2.08695652174 2.6605875 0.1869 -1.32384375 3.98443125 0.027828294738 0.624586901985 29554 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 4.7286625 0.2514 2.5963125 2.13235 0.0231648745063 0.44897953235 25938 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.191380282231 chr19:1043041-1043251+ not annotated SSU-rRNA_Hsa 48028 547178 chr21:8395484-8395522- NoOverlap chr21 8395484 8395522 - 4.57752318107 13 0.204881713236 2.92170774937 1.6558154317 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395483;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395484-8395522-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395484-8395522&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00087560649792 0.00449881602108 0.376036128669 155873 155911 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155872;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395484-8395522-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155873-155911&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTSPRPPPRGEGVASGRPDETANGTGLR None NA NA 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.692307692308 0.458823529412 -2.12032307692 0.2486 0.110869230769 -2.23119230769 0.0258631777768 0.120200141958 30310 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 2.2077 0.458 7.78413846154 -5.57643846154 -0.0281044364119 0.147005144435 55408 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.163437116661 chr7:6058966-6059083- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 48053 476453 chr1:244049246-244049530- NoOverlap chr1 244049246 244049530 - 2.03347789151 95 0.250238321829 1.96670422805 0.0667736634612 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244049245;285;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244049246-244049530-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244049246-244049530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0220429931376 0.00444268601993 0.427055419236 244212548 244212832 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244212547;285;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244049246-244049530-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244212548-244212832&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPDAATREPPGPPGNCTSPGGPPPPPAPSPGRHCSCTGPRSRGRPGRHCSCGCSQAPSPSPPPSAPERRHRSCTGREPAPRRSCTGPRGRGAEPGTRTPPDPAAAAAPSPRPGLPQLR Same 478347 chr1:244049246-244049530- 54644 54644 -6591 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.842105263158 0.848275862069 -0.496050526316 0.3621 -1.39469789474 0.898647368421 0.0195438150023 0.471425843058 32803 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -5.92285052632 0.4347 -6.73653578947 0.813685263158 0.0440220971471 0.531736978544 19990 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0491820829108 chr1:32964051-32964685- ENST00000622512.1 AntiUTR5intron not annotated putative regulatory region 48114 547317 chr21:8445976-8446044- NoOverlap chr21 8445976 8446044 - 2.13694349838 23 0.248733335324 1.23932173978 0.897621758606 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8445975;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445976-8446044-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8445976-8446044&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0307445888799 0.00432210650481 0.391901735042 118182 118250 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118181;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445976-8446044-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118182-118250&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSSRAPFPRTKGTPHRTPVPARGGAR Same 548720 chr21:8445976-8446044- 45825 45825 2289 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.811594202899 1.15741935484 -0.794369565217 0.082 -1.24196956522 0.4476 0.0224286928664 0.362039226698 31631 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -2.52566521739 0.1059 -4.02027826087 1.49461304348 -0.0367414909437 0.468471546155 62757 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 ENST00000612173.1 AntiNC not annotated SSU-rRNA_Hsa 48128 527724 chr19:28608133-28608351+ NoOverlap chr19 28608133 28608351 + 1.16654517716 73 0.163354727318 -3.0602561909 4.22680136806 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;28608132;219;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28608133-28608351%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A28608133-28608351&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0150260420659 0.00429217241227 0.937298549999 29099040 29099258 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;29099039;219;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A28608133-28608351%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A29099040-29099258&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EQWYTGVDKDGHMVERHAFVYQPFNAADLLNWKNNTPSYTEKPQAIIDLLQTIIQTHNTTWADCHQLLMYLFNMDER Same 529171 chr19:28608133-28608351+ 27691 27691 20437 0 19357 28608133 28611285 36033 36033;38545;39010;41587;43070;45508;47044;48128 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:28608133-28611285&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.438356164384 0.195535714286 -1.15866986301 0.0294 -2.14259452055 0.983924657534 -0.0102909966589 0.483875425911 47313 26060 26060;29422;36006;38223;39249;43455;47313;48514 -1.15866986301 0.0092 -2.14259452055 0.983924657534 -0.0345295638116 0.550509199163 61081 27094 27094;34090;60003;61081;61427;61444;64226;70401 0.0 0.0 ENST00000587961.1,ENST00000585394.1 NCintron,AntiNCintron not annotated potentially spurious 48140 477055 chr10:26653289-26653357+ NoOverlap chr10 26653289 26653357 + 3.60664340918 23 0.18709020404 3.01873049221 0.587912916975 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;26653288;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26653289-26653357%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A26653289-26653357&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0042902303822 0.00425525782175 0.339084913709 26942218 26942286 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;26942217;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A26653289-26653357%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A26942218-26942286&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTGSVVFPAPPDYFLPPQPPMPPLEYPELPLPSPDFMETPLDFVLPPLAVAK Same 478948 chr10:26653289-26653357+ 47610 47610 530 0 22672 26653130 26653357 45866 45866;48140 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:26653130-26653357&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.695652173913 0.673828125 9.29500869565 0.4054 8.59894347826 0.696065217391 0.0755330019746 0.378695820934 18874 4376 4376;18874 10.2538565217 0.1579 8.97024782609 1.28360869565 0.081079531839 0.456249268074 13659 4978 4978;13659 0.933583533398 chr10:26566961-26567488+ 0.952687500154 chr10:26566961-26567488+ ENST00000423917.5 NC pseudogene family with sequence similarity 238 member B (non-protein coding) FAM238B pseudogene (ENSG00000231976) 48146 547302 chr21:8442294-8442371- NoOverlap chr21 8442294 8442371 - 3.21556152747 26 0.181922167251 2.74139233392 0.474169193552 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442293;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442294-8442371-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442294-8442371&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00730389301808 0.00424162940601 0.348941599368 158468 158545 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158467;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442294-8442371-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158468-158545&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ENLPRARRRDPPGAHWGQSAPPPDPRAAPPPSPGR Same 548705 chr21:8442294-8442371- 47046 47046 1100 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.858974358974 1.09756097561 0.832226923077 0.2483 -0.951284615385 1.78351153846 0.00913769802621 0.506380511687 37154 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -2.62958076923 0.3278 -7.47232692308 4.84274615385 0.0372313739573 0.628196628209 21712 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 48212 546340 chr21:8392730-8393185+ NoOverlap chr21 8392730 8393185 + 1.44358024359 152 0.175475137833 0.819865794803 0.623714448786 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8392729;456;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392730-8393185%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8392730-8393185&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00136643039874 0.00405791920748 0.635412812724 153114 153569 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153113;456;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392730-8393185%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153114-153569&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VRTAGTVKLRMAH*ISYGSFGRSLLSYLDNCGNSRANTCRRALTPFAGGMRAFIRSKPTRSAPLRPRPGGGRRRLW*L*ITSGRSHAPRGGDDPFERLPYQLSMVVAVPTMVTTGDGESGFDSGEGA*ETATTSKEGSRRANYPLPTRGGSDEK Same 547757 chr21:8392730-8393185+ 62170 62170 -13958 89 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.605263157895 1.0296696949 -1.0219625 0.2511 -1.20088486842 0.178922368421 0.019374382066 0.626494932322 32859 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -1.0219625 0.0785 -1.20088486842 0.178922368421 0.03798312235 0.550225443908 21493 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0 ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 48213 546402 chr21:8436940-8437395+ NoOverlap chr21 8436940 8437395 + 1.44358024359 152 0.175475137833 0.819865794803 0.623714448786 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436939;456;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436940-8437395%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436940-8437395&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00136643039874 0.00405791920748 0.635412812724 153114 153569 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153113;456;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436940-8437395%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153114-153569&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VRTAGTVKLRMAH*ISYGSFGRSLLSYLDNCGNSRANTCRRALTPFAGGMRAFIRSKPTRSAPLRPRPGGGRRRLW*L*ITSGRSHAPRGGDDPFERLPYQLSMVVAVPTMVTTGDGESGFDSGEGA*ETATTSKEGSRRANYPLPTRGGSDEK Same 547815 chr21:8436940-8437395+ 62171 62171 -13958 89 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.605263157895 1.0296696949 -3.92070789474 0.3141 -4.12222236842 0.201514473684 -0.0617244164089 0.611475587643 72609 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -5.16813684211 0.2415 -5.56263881579 0.394501973684 -0.0115789331854 0.535413837554 41886 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 not annotated LSU-rRNA_Hsa 48234 549343 chr22:50697681-50697710+ NoOverlap chr22 50697681 50697710 + 6.3283700183 10 0.457399862669 -1.32175011635 7.65012013465 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50697680;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50697681-50697710%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50697681-50697710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0219792223214 0.0040179284093 0.972871667737 51136109 51136138 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51136108;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50697681-50697710%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51136109-51136138&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RDPAAPRRGR Same 550704 chr22:50697681-50697710+ 44875 44875 3359 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.766666666667 1.36363636364 0.31598 0.767 -7.24968 7.56566 0.00218927317075 0.838790193721 40396 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -26.12624 0.8591 -41.69652 15.57028 -0.0171331486442 0.549705335233 45907 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.201414954186 chr11:70807002-70807171- ENST00000262795.5 NC redundant PhyloCSF signals are accounted for elsewhere on the list 48277 547185 chr21:8396106-8396165- NoOverlap chr21 8396106 8396165 - 3.00568496883 20 0.205963988708 0.818765029311 2.18691993952 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8396105;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396106-8396165-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8396106-8396165&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0118749108457 0.0039495156597 0.530278620705 156496 156555 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156495;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396106-8396165-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156496-156555&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARDLPPGRGRRTPNPEPRAAR Different 548589 chr21:8396106-8396216- 39271 39271 9006 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.816666666667 1.22448979592 3.086745 0.2021 0.82336 2.263385 0.0282032795955 0.508178202054 29403 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 15.741255 0.3399 10.283565 5.45769 0.350522249489 0.593698957636 4227 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0481029199841 chr19:1054780-1054878+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 48278 547278 chr21:8440322-8440381- NoOverlap chr21 8440322 8440381 - 3.00568496883 20 0.205963988708 0.818765029311 2.18691993952 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8440321;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440322-8440381-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8440322-8440381&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0118749108457 0.0039495156597 0.530278620705 156496 156555 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156495;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440322-8440381-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156496-156555&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARDLPPGRGRRTPNPEPRAAR Same 548681 chr21:8440322-8440381- 46757 46757 1521 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.816666666667 1.22448979592 1.946705 0.2612 1.48962 0.457085 0.00854053524453 0.347601513759 37437 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 9.74435 0.331 8.44786 1.29649 0.135444548466 0.436509868614 8795 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.116285203512 chr19:1043041-1043251+ not annotated SSU-rRNA_Hsa 48284 481967 chr10:102419677-102419727- NoOverlap chr10 102419677 102419727 - 4.425947142 17 0.886171287009 2.51344708835 1.91250005364 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102419676;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102419677-102419727-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102419677-102419727&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.109111863028 0.00393347769706 0.452088795441 104179434 104179484 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104179433;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102419677-102419727-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104179434-104179484&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LCACAVRQIWRCPLQHHAESAPPLPAVSPARPR Same 483884 chr10:102419677-102419727- 46814 46814 1470 0 470 102395633 102432561 680 680;6932;11855;22696;25308;48284;57642;69925;70124;70146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102395633-102432561&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.894736842105 -0.504276470588 1.0 -0.980558823529 0.476282352941 -0.0182320842795 0.327908233513 52915 2246 2246;9900;30034;37715;42789;48132;52915;53220;64824;73530 -4.51101764706 0.4227 -4.8133 0.302282352941 -0.0302316123675 0.378907443937 57300 715 715;21243;24877;42637;43017;45832;46589;56731;57300;70842 0.0 0.0571170532245 chr15:43615394-43616690- ENST00000611678.4,ENST00000472685.5,ENST00000406432.5,ENST00000492902.2,ENST00000432590.5,ENST00000481808.1 UTR5,NC,UTR5intron,NCintron,AntiUTR5intron,AntiNCintron coding exon(s) PSD alternative first exon 48301 506365 chr15:40313687-40313767+ NoOverlap chr15 40313687 40313767 + 3.13272598965 27 0.398662292414 1.14244075865 1.99028523101 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;40313686;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40313687-40313767%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A40313687-40313767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00861372545566 0.00388142482447 0.559273015046 40605888 40605968 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;40605887;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40313687-40313767%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A40605888-40605968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NEQGLTERSGLGAKTPTVQGQGGEVAA*QKHV Same 508076 chr15:40313687-40313767+ 47121 47121 1180 4 1677 40313687 40324514 2488 2488;29639;48301;50245;50817;59923;62142;66647;67529;68396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:40313687-40324514&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.18 0.346814814815 0.6536 1.02366296296 -0.676848148148 -0.0402878925133 0.292206288647 66727 2234 2234;17663;29719;32124;51811;55466;56351;56933;64873;66727 0.346814814815 0.2043 1.02366296296 -0.676848148148 -0.0264748043625 0.402793973146 53899 2097 2097;14593;22796;39510;43273;44464;48619;53899;64626;73766 0.0 0.0 ENST00000559030.1 NC not annotated putative regulatory region 48337 493935 chr12:132126011-132126052+ NoOverlap chr12 132126011 132126052 + 5.46846428088 14 0.450730798156 2.95572869267 2.51273558821 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132126010;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132126011-132126052%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132126011-132126052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00880766090086 0.00379866923724 0.487688864 132610556 132610597 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132610555;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132126011-132126052%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132610556-132610597&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NGISVVIRQLQKAAGR Same 495926 chr12:132126011-132126052+ 50765 50765 -2428 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.466666666667 9.74111428571 0.7403 2.69407142857 7.04704285714 0.264561783623 0.821822977659 6505 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 17.8000357143 0.458 2.33120714286 15.4688285714 0.578036321458 0.8915824451 3237 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.895766353878 chr12:132066795-132066969+ 0.802896009089 chr12:132066795-132066969+ ENST00000332441.7 NC redundant PhyloCSF signals are accounted for elsewhere on the list 48370 571971 chr6:73275832-73275909+ NoOverlap chr6 73275832 73275909 + 1.87566926158 26 0.387152490448 -2.44153468884 4.31720395042 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;73275831;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A73275832-73275909%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A73275832-73275909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0260304385259 0.00372361053107 0.843733161936 73985555 73985632 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;73985554;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A73275832-73275909%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A73985555-73985632&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLLHMGQLDSEGNVEILISRRCWCQKYDKRLIDGPGAVAHACIPSTLGGQGGWIMR Same 572996 chr6:73275832-73275909+ 41233 41233 7137 0 23273 73275832 73275909 Best 48370 48370 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:73275832-73275909&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.0 4.93281153846 0.3826 -3.85032692308 8.78313846154 0.163768554793 1.02424940555 10680 Best 10680 10680 4.93281153846 0.1196 -3.85032692308 8.78313846154 0.122077012656 0.793645833284 9689 Best 9689 9689 0.0 0.0 ENST00000442007.1,ENST00000421315.1,ENST00000370384.7,ENST00000474593.1 NC,NCintron,AntiCDSintron,AntiNCintron not annotated potentially spurious 48375 527519 chr19:15398905-15398985+ NoOverlap chr19 15398905 15398985 + 2.57571482438 27 0.914614469509 -0.329981472757 2.90569629713 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15398904;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15398905-15398985%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15398905-15398985&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.006991305454 0.00371129433568 0.682865594398 15509716 15509796 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15509715;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15398905-15398985%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15509716-15509796&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPQPTGAAISPGHGGGLLAASWGGTGALDLESLMSWPPPSGASGPQCTLGFVR Same 528965 chr19:15398905-15398985+ 48627 48627 -252 0 2369 15398227 15398985 3366 3366;10120;48375;70640 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15398227-15398985&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.679012345679 0.321428571429 0.84162962963 0.96 -2.00831111111 2.84994074074 0.112917024979 0.610969099662 14592 5988 5988;14383;14592;72008 -9.02312962963 0.4485 -12.0395962963 3.01646666667 -0.0304552016596 0.527966922181 57525 13120 13120;33994;57525;64726 0.0 0.0921185963692 chr1:154434519-154434700+ ENST00000624704.1,ENST00000593845.5,ENST00000397410.9,ENST00000594594.6 NC,AntiNC,AntiCDSintron,AntiNCintron not annotated potentially spurious 48413 547174 chr21:8395180-8395452- NoOverlap chr21 8395180 8395452 - 1.7698681278 91 0.202105074296 0.554579110263 1.21528901753 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395179;273;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395180-8395452-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395180-8395452&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0133542405068 0.00360388544613 0.579657340171 155569 155841 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155568;273;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395180-8395452-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155569-155841&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QQTGPDSGEGSEGFTPRGGARRPRGGERGHHPTGARGFPPPRRGAHATRAAGARRPPGKAPTRRPPRRRRRRGPGRGAESAVEAREGPGPSRRDSPAGPPPPPTHGR Same 548579 chr21:8395180-8395452- 40279 40279 8134 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.842490842491 1.07350272232 0.157149450549 0.2376 -2.41363626374 2.57078571429 0.0518521041232 0.640039907436 22743 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 1.85887252747 0.3247 0.524396703297 1.33447582418 0.131506032124 0.571025941929 9040 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0844584915729 chr2:25131750-25131911+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 48414 547267 chr21:8439395-8439667- NoOverlap chr21 8439395 8439667 - 1.7698681278 91 0.202105074296 0.554579110263 1.21528901753 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439394;273;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439395-8439667-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439395-8439667&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0133542405068 0.00360388544613 0.579657340171 155569 155841 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155568;273;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439395-8439667-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155569-155841&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QQTGPDSGEGSEGFTPRGGARRPRGGERGHHPTGARGFPPPRRGAHATRAAGARRPPGKAPTRRPPRRRRRRGPGRGAESAVEAREGPGPSRRDSPAGPPPPPTHGR Same 548670 chr21:8439395-8439667- 40280 40280 8134 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.842490842491 1.07350272232 0.155913186813 0.2602 -2.99197582418 3.14788901099 0.0748272334803 0.690323705587 18959 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 4.27329010989 0.3602 -0.886004395604 5.15929450549 0.318083114394 0.729867642354 4464 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0819120651577 chr16:88646520-88646603- not annotated SSU-rRNA_Hsa 48456 548923 chr22:41976793-41976828+ NoOverlap chr22 41976793 41976828 + 5.9985582009 12 0.289832405076 3.61386664895 2.38469155195 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;41976792;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41976793-41976828%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A41976793-41976828&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0175812952036 0.00350362933031 0.439975231399 42372797 42372832 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;42372796;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41976793-41976828%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A42372797-42372832&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVTWCGWQRRRLAAAATVR Same 550295 chr22:41976793-41976828+ 53964 53964 -5508 0 449 41971511 41976889 643 643;1518;1625;1678;2356;48456;54626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:41971511-41976889&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.861111111111 1.26315789474 5.64103333333 0.3212 3.36410833333 2.276925 0.00741715084226 0.423253202554 37930 797 797;1243;1705;1853;3195;37930;49782 0.820441666667 0.2756 -7.20334166667 8.02378333333 0.0222434071031 0.663974863974 26254 2758 2758;2926;3000;4195;4636;26254;61260 0.0 0.0 ENST00000396426.7,ENST00000449288.5 UTR5,UTR5intron coding exon(s) SEPT3 alternative first exon 48477 467300 chr1:153922296-153922592+ NoOverlap chr1 153922296 153922592 + 1.12126664915 99 0.433946545643 0.104023215145 1.01724343401 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;153922295;297;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922296-153922592%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A153922296-153922592&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0758485261463 0.00343585856426 0.540406020139 153894772 153895068 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;153894771;297;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922296-153922592%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A153894772-153895068&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KRGGRAREERRGAWRA*GRE*KRGWRGKRGVREGRKSTRRRNEGTRAGGARGRSERPGRARQGGRG*GEEGARGGGAPCRGGGRGTQGGGARAGVGSRALPLPPPLHLSLPPPPPPLPPPSLLPFLAPHRPR Same 469167 chr1:153922296-153922592+ 28918 28918 19559 53 442 153922296 153923335 631 631;25620;45644;48477;49099;61066;66023;69687 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:153922296-153923335&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.717171717172 1.29411764706 -2.85682121212 0.6308 -5.03152121212 2.1747 0.0276274030987 0.528316481856 29638 8425 8425;19724;29638;38385;45793;48574;52177;55960 -6.89652828283 0.375 -10.3336707071 3.43714242424 0.0453615509227 0.638718606101 19687 6002 6002;12984;19687;42340;44124;45459;47982;71255 0.0 0.119864813257 chr5:181224000-181224812+ ENST00000368655.4 AntiUTR5intron not annotated putative regulatory region 48543 554105 chr3:173396042-173396089+ NoOverlap chr3 173396042 173396089 + 4.30000628904 16 0.632582780194 0.259575121105 4.04043116793 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;173396041;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A173396042-173396089%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A173396042-173396089&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0063722779033 0.00325455086619 0.718386784102 173113832 173113879 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;173113831;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A173396042-173396089%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A173113832-173113879&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VCVRVYR*QWRRRRRRRGPEQGTHLQPPPR Same 555054 chr3:173396042-173396089+ 52090 52090 -3547 5 512 173395998 173398001 763 763;48543;66812;70572 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:173395998-173398001&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.791666666667 1.32923076923 0.1653 0.7126 -1.72148125 1.88678125 -0.0157967561424 0.440049070715 51158 5999 5999;29552;51158;53657 -6.06126875 0.3376 -9.18870625 3.1274375 -0.0247350525476 0.481725034263 52265 10333 10333;31080;37421;52265 0.0 0.0 not annotated putative regulatory region 48559 512649 chr16:85169503-85169844+ NoOverlap chr16 85169503 85169844 + 1.62981577071 114 0.288329391419 1.03961752852 0.590198242187 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;85169502;342;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85169503-85169844%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A85169503-85169844&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0217514754938 0.00322088697507 0.502861856673 85203109 85203450 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;85203108;342;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85169503-85169844%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A85203109-85203450&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPGRAARRGHERAAGPGLPQAAAHGSRGRAGCGRRAALLLHLRRRHRARQGAEAAGEAAGGGRGDPGAALLPVPAAAGAGARRARAVPGRRLRVGVRRVPLLPGRAVGRLRARPHAGGQAHVLAQAAPPVR Same 514294 chr16:85169503-85169844+ 48211 48211 348 0 247 85169288 85171795 315 315;1225;4037;33765;48559;52041;63398 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:85169288-85171795&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.786549707602 1.045 -1.01438947368 0.4771 -1.6059377193 0.591548245614 0.0085515944943 0.461315646761 37426 686 686;1182;1519;35870;37426;44051;65700 -21.1915894737 0.6785 -23.6371780702 2.44558859649 -0.0463474614049 0.563284289185 69575 912 912;1310;2378;23905;34536;69575;73658 0.0 0.0807292718335 chr11:57659477-57660082+ coding exon(s) GSE1 5' extension 48565 588346 chr9:8438794-8438823+ NoOverlap chr9 8438794 8438823 + 5.35544009209 10 0.956694895857 -1.6478300333 7.00327012539 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;8438793;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A8438794-8438823%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A8438794-8438823&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.11164375868 0.00320982225388 0.940178898082 8438794 8438823 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;8438793;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A8438794-8438823%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A8438794-8438823&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRGLNYCSKLQK Same 589292 chr9:8438794-8438823+ 53028 53028 -4463 0 934 8437052 8438823 1439 1439;10011;23498;48565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:8437052-8438823&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.555555555556 0.76571 1.0 -1.16149 1.9272 -0.0240694746176 0.390547723382 56844 18912 18912;32674;56844;67818 -2.08705 0.7109 -5.83441 3.74736 -0.0172396616121 0.469201456896 45986 17802 17802;21160;38054;45986 0.0 0.0 ENST00000355233.9 AntiCDSintron coding exon(s) PTPRD cassette exon 48569 516240 chr17:7438257-7438334+ NoOverlap chr17 7438257 7438334 + 3.04740777125 26 0.628742128399 0.989711488669 2.05769628258 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7438256;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7438257-7438334%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7438257-7438334&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0239054687266 0.0031962257461 0.561296523091 7341576 7341653 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7341575;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7438257-7438334%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7341576-7341653&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSEEGELLSPPPPPPQLPTAAAAAAALPGPATGPVL Same 517614 chr17:7438257-7438334+ 54143 54143 -5574 0 708 7420340 7438334 1096 1096;1905;1920;2283;5350;13988;14787;48569;72692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7420340-7438334&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.769230769231 0.993055555556 -2.81977692308 0.7648 -5.60565 2.78587307692 -0.0372673563691 0.571089886952 64992 1008 1008;1355;2074;2394;2819;5308;13112;27391;64992 -4.16138846154 0.4321 -7.05443461538 2.89304615385 0.0116570842431 0.540331400294 30052 3602 3602;3907;7062;7245;8899;17053;24490;30052;59755 0.0 0.168905084977 chr19:55517224-55518998+ ENST00000575235.5,ENST00000575310.1 UTR5,NCintron protein-coding gene protein-coding gene ENSG00000283439 48610 547167 chr21:8394599-8394739- NoOverlap chr21 8394599 8394739 - 1.61432548525 47 0.165910046443 -0.201238318961 1.81556380421 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8394598;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394599-8394739-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8394599-8394739&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0218932232452 0.0031113412923 0.640921604194 154986 155126 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;154985;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8394599-8394739-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A154986-155126&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPTTRPSFSFSLSLSLPRLPPEFSGSRGRRGRAANERASERTGTRAPPAHAPRRGGGVGVR Different 548573 chr21:8393588-8394739- 1370 1370 47240 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.77304964539 1.29050847458 2.89523404255 0.1969 -0.0637361702128 2.95897021277 0.082927622269 0.72969822983 17908 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 7.22909148936 0.2163 3.68006382979 3.54902765957 0.194354827832 0.655239154729 6405 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.238090345956 chr20:2102768-2103365+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 48623 546345 chr21:8393354-8393464+ NoOverlap chr21 8393354 8393464 + 2.33170808811 37 0.174863029658 1.9908162146 0.340891873514 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8393353;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393354-8393464%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8393354-8393464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0150391408881 0.00307043030921 0.399189204859 153738 153848 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153737;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8393354-8393464%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153738-153848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVVGSWERAGGPPRGEPPPVPAPCLSAPPRCS*LSVPRGPKR Same 547762 chr21:8393354-8393464+ 46687 46687 1936 9 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.774774774775 1.02554347826 -1.42246486486 0.2377 -1.94171081081 0.519245945946 -0.0110031517759 0.423975602379 47776 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -1.42246486486 0.0743 -1.94171081081 0.519245945946 -0.0520254376134 0.491294812306 72060 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0 ENST00000623860.2,ENST00000625598.1 NCintron,AntiNC not annotated LSU-rRNA_Hsa 48624 546407 chr21:8437564-8437674+ NoOverlap chr21 8437564 8437674 + 2.33170808811 37 0.174863029658 1.9908162146 0.340891873514 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8437563;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437564-8437674%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8437564-8437674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0150391408881 0.00307043030921 0.399189204859 153738 153848 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153737;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437564-8437674%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153738-153848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVVGSWERAGGPPRGEPPPVPAPCLSAPPRCS*LSVPRGPKR Same 547820 chr21:8437564-8437674+ 46688 46688 1936 9 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.774774774775 1.02554347826 -6.7383027027 0.2999 -6.45497297297 -0.28332972973 -0.00766012759806 0.30063917825 45683 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -8.08488648649 0.2161 -4.96990540541 -3.11498108108 -0.0424800440721 0.322728662488 67006 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 ENST00000627981.1 AntiNC not annotated LSU-rRNA_Hsa 48626 563862 chr5:35790329-35790367+ NoOverlap chr5 35790329 35790367 + 5.04048448228 13 0.925342300943 0.393053806745 4.64743067553 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;35790328;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35790329-35790367%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A35790329-35790367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0171618166503 0.00306607145902 0.751124653456 35790431 35790469 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;35790430;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A35790329-35790367%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A35790431-35790469&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SNSDCSSNSENESD Same 564850 chr5:35790329-35790367+ 49538 49538 -912 0 24 35787955 35790367 24 24;33;42;72;207;789;797;872;1069;2173;48626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:35787955-35790367&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.307692307692 0.0 4.22733846154 1.0 1.00085384615 3.22648461538 0.135963137438 0.523760565079 12605 20 20;37;72;448;957;1150;1273;1329;1548;1888;12605 3.66622307692 0.4816 -0.854484615385 4.52070769231 0.0716335133623 0.525268272098 14924 77 77;86;112;376;544;1371;1761;1786;2084;2608;14924 0.0 0.0 ENST00000356031.7,ENST00000506526.5,ENST00000510433.1 CDSintron,NCintron,AntiNCintron coding exon(s) SPEF2 5 consecutive coding exons including an alternative termination codon 48651 588945 chr9:37079962-37080054+ NoOverlap chr9 37079962 37080054 + 2.64508714214 31 0.465418872457 0.579877464882 2.06520967726 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;37079961;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A37079962-37080054%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A37079962-37080054&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000944806973972 0.0030131964053 0.599249834185 37079959 37080051 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;37079958;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A37079962-37080054%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A37079959-37080051&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VCADAASLPHLSSPLPVPLRVLVPVWCFLFAATAVSMYVTDPESPAAWDPCLPSVSPAELWN Same 589889 chr9:37079962-37080054+ 49128 49128 -477 0 23346 37079962 37080054 Best 48651 48651 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:37079962-37080054&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.58064516129 0.782608695652 0.569425806452 0.9673 -0.404116129032 0.973541935484 0.0648900481782 0.459717391947 20463 Best 20463 20463 0.149380645161 0.3432 -0.908377419355 1.05775806452 0.0332794840549 0.494578549812 22777 Best 22777 22777 0.0 0.0 ENST00000625445.1 NC not annotated putative regulatory region 48660 582328 chr7:115732188-115732247- NoOverlap chr7 115732188 115732247 - 3.85247992277 20 0.920595864805 2.033085078 1.81939484477 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;115732187;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115732188-115732247-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A115732188-115732247&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.102374025046 0.00299126849305 0.473620163574 115372242 115372301 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;115372241;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115732188-115732247-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A115372242-115372301&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WSVNETGKVTDSE*VPEVLSKCTG Same 583289 chr7:115732188-115732247- 48282 48282 378 10 1478 115728598 115732308 2200 2200;48660;68512 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:115728598-115732308&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.408163265306 1.113535 0.9987 -0.19307 1.306605 0.0555522367456 0.42131197062 22043 15691 15691;22043;24332 -7.092835 0.892 -12.79522 5.702385 0.000621767468266 0.610230614059 35054 14511 14511;35054;57894 0.0 0.0 not annotated putative regulatory region 48815 577654 chr7:27140287-27140349+ NoOverlap chr7 27140287 27140349 + 3.56479043052 21 0.962711310205 0.952795221692 2.61199520883 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27140286;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27140287-27140349%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27140287-27140349&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0545236251915 0.00263513244159 0.590667179142 27179906 27179968 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27179905;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27140287-27140349%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27179906-27179968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WPHVTFYSQ*ADLSVLWMILR Same 578693 chr7:27140287-27140349+ 53482 53482 -4667 10 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.492063492063 1.05882352941 -0.460219047619 0.9901 -1.74874761905 1.28852857143 0.00387529435943 0.423709854643 39565 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -2.28018571429 0.9116 -8.6988 6.41861428571 0.0812097146026 0.665189335064 13643 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NCintron,AntiNCintron not annotated putative regulatory region 48863 591076 chr9:136327508-136327573+ NoOverlap chr9 136327508 136327573 + 1.74144094048 22 0.3707761987 0.851399983872 0.890040956607 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136327507;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136327508-136327573%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136327508-136327573&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0584147018146 0.00252806605617 0.388258813845 139221964 139222029 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139221963;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136327508-136327573%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139221964-139222029&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGGDITATAAGGAAAPRAHHFLGASPGEDGR Same 592030 chr9:136327508-136327573+ 46847 46847 2016 0 94 136327474 136332153 111 111;48863;60868 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136327474-136332153&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.818181818182 1.00137931034 3.22661818182 0.4798 1.28523636364 1.94138181818 -0.000401401548142 0.495882713449 41700 43 43;41700;69026 -8.01801818182 0.3911 -8.36142727273 0.343409090909 -0.0425273289261 0.398542313218 67049 1884 1884;42655;67049 0.0 0.167268471936 chr1:15928091-15936266+ ENST00000440944.5 UTR5 coding exon(s) GPSM1 5' coding exon 48911 492306 chr12:64780731-64780913+ NoOverlap chr12 64780731 64780913 + 1.87983277074 61 0.384397024741 0.584990139623 1.29484263111 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;64780730;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A64780731-64780913%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A64780731-64780913&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00762918342072 0.00238698465916 0.599093808407 65174511 65174693 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;65174510;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A64780731-64780913%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A65174511-65174693&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TKPRLLPELAGAARREEQREPGSRAPGTMDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPR Same 494288 chr12:64780731-64780913+ 45701 45701 3210 0 564 64780731 64781264 857 857;4476;48911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:64780731-64781264&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.775956284153 1.04146341463 -3.90896229508 0.5421 -4.16540819672 0.256445901639 -0.0349673002277 0.365985888227 63661 1438 1438;5625;63661 -9.91703114754 0.4234 -7.27189016393 -2.64514098361 -0.0317524208123 0.372270383955 58706 354 354;3489;58706 0.0 0.0 coding exon(s) TBC1D30 5' extension. 48990 528171 chr19:35784653-35784688+ NoOverlap chr19 35784653 35784688 + 6.26704994341 12 0.686219831642 4.44375825673 1.82329168667 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35784652;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35784653-35784688%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35784653-35784688&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0734904958636 0.00221952526475 0.363706544731 36275555 36275590 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36275554;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35784653-35784688%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36275555-36275590&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPDLTPPRPHPDSPPCPGPQPSQDSARR Same 529620 chr19:35784653-35784688+ 49027 49027 -37 0 630 35767600 35790402 970 970;24953;37997;48990;61514;64238;71528 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35767600-35790402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.722222222222 0.675 11.53925 0.9548 8.41240833333 3.12684166667 0.343917830337 0.461944737281 4773 432 432;4773;28957;32900;57014;70882;72541 3.17071666667 0.5484 -5.16080833333 8.331525 0.127529978749 0.674644481135 9309 633 633;9309;48569;62013;62367;64507;71253 0.0 0.140836494501 chr1:161052440-161052543- ENST00000007510.8 CDSintron coding exon(s) PROSER3 retained intron CDS 49032 477233 chr10:38175849-38175908+ NoOverlap chr10 38175849 38175908 + 3.37996498346 20 0.2834493019 -0.518849954009 3.89881493747 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;38175848;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38175849-38175908%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A38175849-38175908&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00578003960259 0.00214971305043 0.74580522343 38464777 38464836 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;38464776;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A38175849-38175908%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A38464777-38464836&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WQGTGIGPSCGWGQAVVSAGKQQTRPSLQVQHSLSLGQR Same 479126 chr10:38175849-38175908+ 44949 44949 4083 0 20199 38175849 38176196 38120 38120;49032 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:38175849-38176196&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.185758513932 -7.698765 0.5474 -7.359955 -0.33881 0.00516053940013 0.294544473468 38963 3279 3279;38963 -7.60131 0.2105 -7.51561 -0.0857 -0.0350709755188 0.372429986605 61516 7069 7069;61516 0.0 0.0 ENST00000423162.1,ENST00000419779.1 NC,NCintron pseudogene cyclin Y-like pseudogene (ENSG00000224761) 49038 557409 chr3:164021064-164021105- NoOverlap chr3 164021064 164021105 - 4.44544999993 14 0.271305409323 -3.47577856694 7.92122856687 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;164021063;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164021064-164021105-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A164021064-164021105&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0048334564569 0.00213557104901 1.02079082452 163738852 163738893 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;163738851;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A164021064-164021105-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A163738852-163738893&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DITSNCHLCSVTSSQGTLR Same 558378 chr3:164021064-164021105- 41514 41514 7524 0 515 164020256 164021752 771 771;1003;8769;19116;25346;28404;49038 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:164020256-164021752&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52380952381 0.4 -0.836121428571 0.0261 -3.17873571429 2.34261428571 0.0376633327393 0.46304556518 26229 19419 19419;24940;25790;26229;28407;40126;56143 -0.836121428571 0.0081 -3.17873571429 2.34261428571 0.00395737450337 0.445081901951 33417 13932 13932;30001;32108;33417;45789;56644;69776 0.0 0.0 not annotated fragments of a reteroviral ORF 49099 467302 chr1:153922517-153922612+ NoOverlap chr1 153922517 153922612 + 3.75860942714 32 0.312783722438 2.99589687679 0.76271255035 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;153922516;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922517-153922612%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A153922517-153922612&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00980787191479 0.00200036661071 0.424872139166 153894993 153895088 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;153894992;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922517-153922612%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A153894993-153895088&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGRAVPGWGEGDARRGRAGGRRLAGASPPPAPPPFPSPTSATTASSQPPSLPR Same 469169 chr1:153922517-153922612+ 49484 49484 -385 0 442 153922296 153923335 631 631;25620;45644;48477;49099;61066;66023;69687 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:153922296-153923335&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.875 0.951603498542 0.80451875 0.3655 1.291196875 -0.486678125 -0.0226722591355 0.33398187914 55960 8425 8425;19724;29638;38385;45793;48574;52177;55960 -4.5796625 0.2562 -3.193028125 -1.386634375 -0.0497866588482 0.386068224675 71255 6002 6002;12984;19687;42340;44124;45459;47982;71255 0.0 0.110891874327 chr5:181224000-181224812+ ENST00000368655.4 AntiUTR5intron not annotated putative regulatory region 49173 581266 chr7:65770685-65770837- NoOverlap chr7 65770685 65770837 - 1.50692939758 51 0.234920122012 -1.3801097455 2.88703914308 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;65770684;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A65770685-65770837-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A65770685-65770837&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00360532168239 0.00182842145429 0.789847212343 65235672 65235824 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;65235671;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A65770685-65770837-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A65235672-65235824&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MSQRPAPHAEPIGTPGAGSSRSAPAREGDHRRPGGMSCPQSSAQPPPPISYEEEFTTTWTTTTCVTSRPAGSAQQR Same 582220 chr7:65770685-65770837- 39375 39375 9798 0 22043 65770455 65770837 43654 43654;46017;49173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:65770455-65770837&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.692810457516 0.708081167675 -7.95123333333 0.5666 -8.85054901961 0.899315686275 0.00738850358334 0.363570888705 37942 2266 2266;10897;37942 -9.12259803922 0.247 -9.3364254902 0.21382745098 -0.053343512935 0.482307322284 72444 3745 3745;9173;72444 0.431026381201 chr7:56116021-56116314- 0.409930100431 chr7:56116021-56116314- ENST00000633579.1 NC not annotated putative regulatory region 49193 560797 chr4:575629-575664- NoOverlap chr4 575629 575664 - 4.39689160852 12 0.216800183108 2.62931665281 1.76757495571 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;575628;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575629-575664-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A575629-575664&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00119670589257 0.00177527245747 0.382407877504 569418 569453 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;569417;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575629-575664-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A569418-569453&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPQRIRGRRDRRRHR Same 561785 chr4:575629-575664- 51955 51955 -2762 0 477 574887 576356 703 703;6245;31841;46311;49193;54444;54931;56343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:574887-576356&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.722222222222 1.70414201183 -5.66681666667 0.4301 -4.27003333333 -1.39678333333 0.0226844911141 0.195061697428 31516 1278 1278;5393;22990;30652;31516;37018;38104;57044 -44.0306666667 0.7283 -40.0452 -3.98546666667 -0.0277425205993 0.0321854270085 55036 1826 1826;3252;19289;35804;46734;55036;61815;71601 0.0 0.0939259079971 chr2:218403232-218403417+ protein-coding gene protein-coding gene ENSG00000273238 49271 567849 chr5:77946477-77946671- NoOverlap chr5 77946477 77946671 - 1.12085072948 65 0.945547593476 -1.22239229129 2.34324302077 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;77946476;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77946477-77946671-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A77946477-77946671&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0632824545986 0.00156828652965 0.73363960858 77242301 77242495 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;77242300;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77946477-77946671-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A77242301-77242495&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQPSAMIKHLLLWGNKAH*SNMYF*HLKYHPVP*HQAQLFSGMEFQSIFF*FMDGQ*IKIKPWAMK Same 568853 chr5:77946477-77946671- 38564 38564 10707 46 10817 77946424 77958262 16522 16522;20968;49271 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:77946424-77958262&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.4 0.129568106312 -0.869935384615 0.9996 -2.22135692308 1.35142153846 0.134321669629 0.535089829678 12726 5139 5139;6158;12726 -4.96911076923 0.9265 -6.19516307692 1.22605230769 0.102266173196 0.550412634823 11296 5598 5598;11296;66232 0.0 0.0 not annotated potentially spurious 49338 496462 chr12:95382461-95382508- NoOverlap chr12 95382461 95382508 - 4.84759997204 16 0.697748340581 3.52536249161 1.32223748043 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;95382460;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95382461-95382508-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A95382461-95382508&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0836480399316 0.00144459716629 0.360648730913 95776237 95776284 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;95776236;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A95382461-95382508-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A95776237-95776284&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNIIREWTWPSKGKLDNPVEIWVLFYN Same 498464 chr12:95382461-95382508- 50584 50584 -1246 0 4178 95377268 95382508 5778 5778;49338 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:95377268-95382508&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.0 5.08169375 0.9037 6.11715 -1.03545625 0.0538783250165 0.191773865846 22351 3550 3550;22351 6.3632375 0.5063 1.67505625 4.68818125 0.166883618627 0.553457915117 7274 3793 3793;7274 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 49374 476445 chr1:244048639-244048866- NoOverlap chr1 244048639 244048866 - 2.00911579065 76 0.212805531797 1.87648947336 0.132626317294 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244048638;228;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048639-244048866-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244048639-244048866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0257761637111 0.00134714393797 0.442666626666 244211941 244212168 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244211940;228;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048639-244048866-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244211941-244212168&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLLLLPAAAAAAGLGGLPPALAPLPPGPPTPQSRLRRPLPPAPPSRPPPLAAGGARRSEEGPTLNGSPWQQPSGGRSLPDTARERARERARSRRAGWGGGGGGGAGAGEGEGR Same 478339 chr1:244048639-244048866- 52660 52660 -3286 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.811403508772 0.728865735259 2.18738684211 0.2343 1.82747894737 0.359907894737 0.0591059000454 0.490401549437 21413 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -1.92363552632 0.388 -6.24583289474 4.32219736842 0.146199035101 0.690516767159 8183 Best 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.090465998226 chr11:62762867-62763026+ not annotated putative regulatory region 49390 546369 chr21:8397528-8397659+ NoOverlap chr21 8397528 8397659 + 2.59493410452 44 0.182653960063 2.79657441239 -0.201640307872 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397527;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397528-8397659%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397528-8397659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0188193505386 0.00130971430151 0.35593828859 157922 158053 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157921;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397528-8397659%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157922-158053&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPSSSSPEGAGSGGCGGGRAGPGVGSAGDRPPTGDRPPPGAFPPRRCAATGSGTAGK Different 547782 chr21:8397528-8397689+ 47943 47943 1447 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.848484848485 1.05882352941 -0.503552272727 0.2485 0.623970454545 -1.12752272727 -0.015931175864 0.302492177718 51252 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -3.60176363636 0.3538 -0.986811363636 -2.61495227273 -0.0301987564153 0.371579236602 57276 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.332825491446 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 49450 574592 chr6:34237470-34237505- NoOverlap chr6 34237470 34237505 - 5.99025841057 12 0.301701380941 3.95276665688 2.0374917537 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34237469;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237470-34237505-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34237470-34237505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0176252712129 0.00120057622171 0.39492222562 34205247 34205282 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34205246;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237470-34237505-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34205247-34205282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAGVLPAPPGPAARPRAARPSPAAGSR Same 575624 chr6:34237470-34237505- 55257 55257 -5807 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 1.0 1.125 1.5316 0.1951 1.44799166667 0.0836083333333 0.0221368343052 0.256206282481 31750 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -1.7907 0.1874 -0.917225 -0.873475 -0.0173399168221 0.302857059053 46067 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0 ENST00000311487.9,ENST00000478214.1 AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000186577 49470 546373 chr21:8397814-8397975+ NoOverlap chr21 8397814 8397975 + 2.00853890933 54 0.181298938368 2.01673396466 -0.00819505533369 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397813;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397814-8397975%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397814-8397975&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0212954015875 0.00115608262083 0.40784744346 158218 158379 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158217;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397814-8397975%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158218-158379&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGGGGGGGGGGTETPPECYSPPGSSTRRIPGPRERDPSPRSPPSRRPPPRGIPREGGLPRGGAPASPCGGTGPPLPR Same 547786 chr21:8397814-8397975+ 49416 49416 54 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.802469135802 0.918639053254 -0.90412037037 0.2339 -1.33696851852 0.432848148148 -0.0143536536792 0.450115530367 50148 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -1.58564074074 0.3039 -2.53058703704 0.944946296296 0.0219596145777 0.542556272566 26343 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.213988262611 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 49500 546434 chr21:8442044-8442205+ NoOverlap chr21 8442044 8442205 + 2.00853890933 54 0.181298938368 2.10563518714 -0.0970962778148 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442043;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442044-8442205%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442044-8442205&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0212954015875 0.00110653369327 0.395705913911 158218 158379 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158217;162;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442044-8442205%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158218-158379&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGGGGGGGGGGGGTETPPECYSPPGSSTRRIPGPRERDPSPRSPPSRRPPPRGIPREGGLPRGGAPASPR Same 547847 chr21:8442044-8442205+ 50004 50004 -504 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.802469135802 0.918639053254 -0.24707037037 0.2334 -1.03640185185 0.789331481481 -0.00255842815026 0.496239431208 42801 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -2.41882037037 0.2854 -5.14986851852 2.73104814815 0.0261721423959 0.618330896426 24944 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0234514967232 chr16:376136-376455- not annotated LSU-rRNA_Hsa 49514 547173 chr21:8395054-8395176- NoOverlap chr21 8395054 8395176 - 2.22668050847 41 0.218133300582 0.26250488863 1.96417561984 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395053;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395054-8395176-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395054-8395176&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00690237638126 0.00108074543964 0.64044382104 155443 155565 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155442;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395054-8395176-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155443-155565&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSPAGPPPPPTHGRTGDPPKGSLNLRAGTR*VPGRRGGGRGGGGGDRRPAPDPR Same 548578 chr21:8395054-8395176- 44917 44917 4597 19 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.764227642276 1.025 -1.64523902439 0.2679 -2.19802926829 0.552790243902 -0.0186917376234 0.434156144116 53246 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -2.17409756098 0.3766 -3.2366195122 1.06252195122 0.0261422991272 0.524623710585 24954 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0958086110345 chr12:48999079-48999287- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 49515 547266 chr21:8439269-8439391- NoOverlap chr21 8439269 8439391 - 2.22668050847 41 0.218133300582 0.26250488863 1.96417561984 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439268;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439269-8439391-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439269-8439391&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00690237638126 0.00108074543964 0.64044382104 155443 155565 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155442;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439269-8439391-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155443-155565&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSPAGPPPPPTHGRTGDPPKGSLNLRAGTR*VPGRRGGGRGGGGGDRRPAPDPR Same 548669 chr21:8439269-8439391- 44918 44918 4597 19 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.764227642276 1.025 -2.86326829268 0.2955 -2.83021707317 -0.0330512195122 -0.0267308838003 0.363889052587 58517 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 1.41743170732 0.3966 -0.248990243902 1.66642195122 0.115786041602 0.557593664127 10162 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.093470745472 chr10:72072144-72072258- not annotated SSU-rRNA_Hsa 49525 546257 chr21:8215677-8215808+ NoOverlap chr21 8215677 8215808 + 2.96414317055 44 0.390798809796 2.15861355717 0.805529613387 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8215676;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215677-8215808%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8215677-8215808&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0300433341313 0.00106540155111 0.49453621775 115142 115273 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;115141;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215677-8215808%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A115142-115273&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MGKKPGSLAWSRAWNASA*WATFGKQNWRCGMNRTPG*GARCRR Same 547670 chr21:8215677-8215808+ 49624 49624 -99 25 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.651515151515 1.11990950226 -0.348190909091 0.2731 0.582090909091 -0.930281818182 -0.0177547340576 0.321748380502 52578 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -1.74637954545 0.1936 -0.0759522727273 -1.67042727273 -0.0411801065091 0.415146572075 66096 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.17082870746 chr3:9841979-9842082- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 49554 546282 chr21:8218712-8218774+ NoOverlap chr21 8218712 8218774 + 4.71645718973 21 0.247555831671 4.08681432974 0.629642859988 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8218711;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8218712-8218774%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8218712-8218774&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00520840978888 0.00100718061541 0.320078332309 118188 118250 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118187;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8218712-8218774%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118188-118250&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGACPAARRDRGPVRSALRPGKRGAAGK Same 547695 chr21:8218712-8218774+ 51285 51285 -1731 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.809523809524 1.17391304348 0.773642857143 0.082 -0.161304761905 0.934947619048 0.028321477117 0.395457154575 29347 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 0.790723809524 0.1138 2.08445714286 -1.29373333333 -0.0291753565441 0.345689175415 56349 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000615294.1,ENST00000623664.1 NC,NCintron not annotated SSU-rRNA_Hsa repeat sequence 49555 546454 chr21:8445982-8446044+ NoOverlap chr21 8445982 8446044 + 4.71645718973 21 0.247555831671 4.08681432974 0.629642859988 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8445981;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445982-8446044%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8445982-8446044&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00520840978888 0.00100718061541 0.320078332309 118188 118250 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118187;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445982-8446044%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118188-118250&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGACPAARRDRGPVRSALRPGKRGAAGK Same 547867 chr21:8445982-8446044+ 51286 51286 -1731 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.809523809524 1.17391304348 0.773642857143 0.082 -0.161304761905 0.934947619048 0.028321477117 0.395457154575 29348 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -1.2695 0.1048 0.0907714285714 -1.36027142857 -0.0331239285955 0.341925050646 59883 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.457759603313 chr2:27137091-27138329- ENST00000612173.1 NC not annotated LSU-rRNA_Hsa 49557 549326 chr22:50674335-50674532+ NoOverlap chr22 50674335 50674532 + 1.75246818183 66 0.18037527946 1.21851668281 0.53395149902 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50674334;198;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674335-50674532%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50674335-50674532&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0220021180902 0.000997149211467 0.495026625718 51112763 51112960 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51112762;198;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674335-50674532%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51112763-51112960&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPRFPPVSGPLPPPPPPPGKAGAELSRGRCS*AAPPPPPPPPLRSPRSRCPPRRPRPRPPPAPSRAARPTGLR Same 550698 chr22:50674335-50674532+ 48040 48040 1517 30 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.873737373737 0.914285714286 -1.62390606061 0.2303 -1.57733787879 -0.0465681818182 -0.0297394240613 0.383927816147 60358 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -8.45842727273 0.3619 -5.45945151515 -2.99897575758 -0.0194177523041 0.363954451591 47636 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.157303097904 chr3:49014825-49015288+ ENST00000414786.6 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 49558 484837 chr11:64234557-64234709+ NoOverlap chr11 64234557 64234709 + 2.06280587234 51 0.340907792124 0.469921559095 1.59288431324 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64234556;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64234557-64234709%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64234557-64234709&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00457236829444 0.000995753636402 0.624065939608 64002029 64002181 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64002028;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64234557-64234709%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64002029-64002181&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AACPPARAQPPAAPAVPAAAARRHRPPARPAPPAASAALRCAACTQGSGGGRGGVAPR Same 486784 chr11:64234557-64234709+ 46898 46898 2660 0 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.875816993464 0.897045028143 -2.51126470588 0.3696 -4.4624 1.95113529412 -0.0283833231972 0.560686143398 59534 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 -3.46505882353 0.2493 -7.18259411765 3.71753529412 0.00503095789685 0.655169700881 32934 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.266492517766 chr17:81228928-81229476- ENST00000309422.6 UTR5 under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 49566 546368 chr21:8397527-8397658+ NoOverlap chr21 8397527 8397658 + 2.53605454889 44 0.181929156523 2.78652501242 -0.250470463525 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397526;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397527-8397658%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397527-8397658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0184247991222 0.000979292300968 0.34939923916 157921 158052 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157920;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397527-8397658%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157921-158052&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RVRGWAGGAGGGVGGGPSPDRRPAAAGRISTAAVRRDRLRDGWEGR Different 547781 chr21:8397527-8397688+ 50168 50168 -602 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.848484848485 1.09452736318 -3.367375 0.2481 -1.75469090909 -1.61268409091 -0.0222310216857 0.226151908163 55642 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -2.80939090909 0.3538 -3.94908409091 1.13969318182 0.0140609999415 0.533289717694 29117 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.332825491446 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 49570 547234 chr21:8434833-8434925- NoOverlap chr21 8434833 8434925 - 1.901080605 31 0.211370432446 -1.62919994131 3.53028054632 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8434832;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8434833-8434925-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8434833-8434925&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0177543798156 0.000967261527246 0.787405310939 151007 151099 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;151006;93;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8434833-8434925-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A151007-151099&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPPRPNPLGTPGPARRDPPPTRKGEARATVGDEPHSATTAVAGGTLASPPQPR Same 548637 chr21:8434833-8434925- 42316 42316 7254 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.784946236559 0.977477477477 -3.49063870968 0.2892 -5.04381612903 1.55317741935 -0.0156488525764 0.475339224025 51044 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -3.13987741935 0.3177 -5.34792258065 2.20804516129 -0.00244813205495 0.537885785651 36590 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0952163661434 chr9:127744564-127745099- not annotated SSU-rRNA_Hsa 49604 511818 chr16:54930707-54930775+ NoOverlap chr16 54930707 54930775 + 3.02230435351 23 0.635227774074 0.0415912646314 2.98071308888 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54930706;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54930707-54930775%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54930707-54930775&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00984386659912 0.000863945526897 0.659592713128 54964619 54964687 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54964618;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54930707-54930775%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54964619-54964687&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGERAEEEEGEGEARLAAGLAAAAQK Same 513459 chr16:54930707-54930775+ 55213 55213 -5609 0 496 54928752 54938880 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.768115942029 0.901960784314 -2.3443826087 0.885 -3.81213478261 1.46775217391 -0.0445826003489 0.443664509883 68999 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -10.8614391304 0.6943 -15.0544304348 4.19299130435 -0.0297751681662 0.541456270798 56928 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.0 not annotated putative regulatory region 49643 547204 chr21:8397835-8397975- NoOverlap chr21 8397835 8397975 - 2.06375106139 47 0.180927196609 1.45104680258 0.612704258808 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397834;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397835-8397975-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397835-8397975&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0176907794601 0.000767832826961 0.47601523457 158239 158379 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158238;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397835-8397975-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158239-158379&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MGGTVFSPWEGWPGPPTRRRRRAPAGETPLAGDSPRGWAPGGGRARRRVSLPRPRDSASAAAGGAVTLGGGFGPAAAAAAATAAAAPTR Same 548607 chr21:8397835-8397975- 47427 47427 2216 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.822695035461 0.950367647059 -3.00850638298 0.2318 -0.834268085106 -2.17423829787 -0.022442829587 0.186595530738 55806 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -1.6925787234 0.3082 1.99439574468 -3.68697446809 -0.0221439102228 0.337776575357 49914 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.079851941301 chr11:1240851-1251743+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 49644 547300 chr21:8442065-8442205- NoOverlap chr21 8442065 8442205 - 2.06375106139 47 0.180927196609 1.45104680258 0.612704258808 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442064;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442065-8442205-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442065-8442205&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0176907794601 0.000767832826961 0.47601523457 158239 158379 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158238;141;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442065-8442205-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158239-158379&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVAPWEGWPGPPTRRRRRAPAGETPLAGDSPRGWAPGGGRARRRVSLPRPRDSASAAAGGAVTLGGGFGPAAAAAAATAAAAAAPTR Same 548703 chr21:8442065-8442205- 47428 47428 2216 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.822695035461 0.950367647059 -1.74504042553 0.23 -0.308074468085 -1.43696595745 -0.0219996175467 0.262933402603 55464 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -3.29551489362 0.2906 0.946510638298 -4.24202553191 -0.0314622203822 0.312339874534 58426 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0908630332502 chr11:68908145-68908337+ not annotated SSU-rRNA_Hsa 49658 547189 chr21:8396420-8396461- NoOverlap chr21 8396420 8396461 - 3.34453572173 14 0.191762308036 -0.506364281688 3.85090000342 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8396419;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396420-8396461-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8396420-8396461&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0176965155828 0.000733483912444 0.6848375872 156813 156854 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156812;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396420-8396461-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156813-156854&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAGSRPRPTRREASRAGGRAYAR Same 548593 chr21:8396420-8396461- 48674 48674 984 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.904761904762 1.58260869565 5.6831 0.2227 3.1897 2.4934 0.0299768342284 0.464152506339 28694 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 13.8406857143 0.2691 7.27543571429 6.56525 0.17493120998 0.591277739104 6978 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.205800656994 chr12:56599129-56599358- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 49659 547285 chr21:8440639-8440680- NoOverlap chr21 8440639 8440680 - 3.34453572173 14 0.191762308036 -0.506364281688 3.85090000342 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8440638;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440639-8440680-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8440639-8440680&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0176965155828 0.000733483912444 0.6848375872 156813 156854 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;156812;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8440639-8440680-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A156813-156854&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAGSRPRPTRREASRAGGRAYAR Same 548688 chr21:8440639-8440680- 48675 48675 984 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.904761904762 1.58260869565 2.67801428571 0.155 1.66191428571 1.0161 0.0263010900524 0.345018393772 30132 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 4.99127857143 0.2069 4.20568571429 0.785592857143 0.000245976408647 0.377575589205 35229 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.117248221126 chr19:1042662-1042826+ not annotated SSU-rRNA_Hsa 49682 473182 chr1:90835296-90835352- NoOverlap chr1 90835296 90835352 - 3.36770526045 19 0.924845301627 -0.826842182561 4.19454744301 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90835295;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835296-90835352-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90835296-90835352&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0371463151069 0.000714761619989 0.771711261701 91300853 91300909 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91300852;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835296-90835352-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91300853-91300909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DASSLVSLVSLRKIPEKPPGRINQTQAARQFSCTLLK Same 475061 chr1:90835296-90835352- 52933 52933 -3251 0 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.561403508772 0.678571428571 -2.187 1.0 -1.2806 -0.9064 -0.0509376615666 0.231835853547 71211 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -9.96850526316 0.8584 -9.46413684211 -0.504368421053 -0.0479343997014 0.340818868055 70462 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 49809 473186 chr1:90840962-90840997- NoOverlap chr1 90840962 90840997 - 5.37277506789 12 1.0 0.134200081229 5.23857498666 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90840961;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90840962-90840997-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90840962-90840997&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0176016347427 0.000421978395214 0.801984731694 91306519 91306554 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91306518;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90840962-90840997-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91306519-91306554&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPCGKNVVLLWDNSLLFPDLLALNLK Same 475065 chr1:90840962-90840997- 61102 61102 -11293 0 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.472222222222 0.6 -1.21241666667 1.0 -1.157275 -0.0551416666667 -0.0393581846664 0.255195135884 66198 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -11.6961583333 0.9036 -11.5302166667 -0.165941666667 -0.0420603329683 0.304019670673 66713 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 49936 558087 chr3:195909684-195909767- NoOverlap chr3 195909684 195909767 - 1.89327500548 28 0.218107554306 0.911878511842 0.981396493635 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;195909683;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195909684-195909767-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A195909684-195909767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0231345553887 0.000165692894393 0.437516720961 195636555 195636638 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;195636554;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195909684-195909767-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A195636555-195636638&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPPTPHPGAAQAQAQAGSGRSAGGTAGGRSPAGAGAGRAPGGPTLTPGGEGGEAGAGLGGGPGR Same 559061 chr3:195909684-195909767- 46647 46647 3289 0 319 195908695 195909767 435 435;1687;7715;11110;49936;55625;56550 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:195908695-195909767&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.892857142857 1.02127659574 -0.267092857143 0.4745 -0.541746428571 0.274653571429 -0.040501597401 0.376045727504 66857 374 374;1346;2237;3722;53564;66857;67033 -4.73471428571 0.3781 -3.30086428571 -1.43385 -0.0397582568243 0.367750975219 65052 2327 2327;2340;2709;4762;21424;33118;65052 0.0 0.236965548127 chr3:45225125-45226027- ENST00000468819.1,ENST00000458180.1 NCintron,AntiNCintron under investigation TNK2 contains a series of NPRs in its 5' UTR that highlight a reading frame and STOP codon that are conserved in placental mammals, although no ATG initiation codon has been identified. However, a [CTG] codon has been identified that corresponds well to the 5' end of the NPR region and a consistent initiation codon peak in ribosome profiling data, giving a prospective 153aa single exon CDS [chr3:195909582-195908695]. 49945 572463 chr6:108166662-108166691+ NoOverlap chr6 108166662 108166691 + 7.0711299181 10 0.92227206836 5.16467995644 1.90644996166 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108166661;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108166662-108166691%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108166662-108166691&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.095111270995 0.000149026638629 0.336836770571 108487866 108487895 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108487865;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108166662-108166691%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108487866-108487895&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLAGWRAAGERRRPAAR Same 573490 chr6:108166662-108166691+ 49080 49080 865 0 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 0.756302521008 -9.84683 0.9796 -7.59339 -2.25344 0.056021242924 0.220270130013 21949 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 -13.19637 0.495 -13.49296 0.29659 -0.0124475031728 0.299147425383 42480 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000368986.8 UTR5 not annotated putative regulatory region 49953 586629 chr8:48556353-48556379- NoOverlap chr8 48556353 48556379 - 7.63694424099 9 0.648343972262 3.03655549553 4.60038874547 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;48556352;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A48556353-48556379-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A48556353-48556379&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0252387878096 0.000131658630738 0.655317745568 49468913 49468939 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;49468912;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A48556353-48556379-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A49468913-49468939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLGRAGPWR Same 587570 chr8:48556353-48556379- 53018 53018 -3065 0 22920 48556218 48556379 46797 46797;49953 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:48556218-48556379&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.814814814815 0.45 3.94543333333 0.704 -1.01547777778 4.96091111111 -9.65404814435e-05 0.628750108143 41550 Best 41550 41550;64558 0.558233333333 0.7053 -2.95131111111 3.50954444444 -0.000419994923584 0.450772844347 35573 Best 35573 35573;37700 0.0 0.0 ENST00000524011.1,ENST00000522575.1 NC,AntiNCintron not annotated potentially spurious 49975 731834 chr9:136245441-136245473- Extension chr9 136245441 136245473 - 5.88927270337 11 0.268024719615 2.71155451374 3.17771818963 chr9:136245441-136245824- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136245440;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136245441-136245473-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136245441-136245473&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0181934558273 7.59050442432e-05 0.532925360893 139137287 139137319 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139137286;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136245441-136245473-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139137287-139137319&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEARPRAGTPRPPGPRPSGTPCDRPR Same 732433 chr9:136245441-136245473- 54504 54504 -4529 0 518 136245441 136267514 774 774;1246;1671;1737;14484;26677;40966;49975;52795 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136245441-136267514&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.909090909091 0.916666666667 4.91685454545 0.3767 -2.52288181818 7.43973636364 0.0115020942006 0.837258314245 36147 109 109;1226;1522;2295;2801;2860;36147;58996;63557 -2.06696363636 0.3425 -1.35674545455 -0.710218181818 -0.0275010218403 0.301767965023 54815 1329 1329;2089;2472;2567;3628;6432;23671;29069;54815 0.0 0.0190508003174 chr7:91264881-91266824+ ENST00000358701.9 ExtensionMid not annotated putative regulatory region 50093 588108 chr8:142572180-142572218- NoOverlap chr8 142572180 142572218 - 3.24835379766 13 0.200996531507 0.00937697291374 3.23897682474 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;142572179;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142572180-142572218-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A142572180-142572218&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0226546253923 -0.000201219709919 0.599419856148 143653541 143653579 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;143653540;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142572180-142572218-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A143653541-143653579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALPVLPLAVPASPGPATGLLQEGEAGASPGPAR Same 589053 chr8:142572180-142572218- 49349 49349 744 0 902 142572180 142575904 1386 1386;1889;2097;3879;8408;13162;50093;62741 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:142572180-142575904&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.717948717949 0.208556149733 -4.04467692308 0.2305 -2.1335 -1.91117692308 0.030453856347 0.151459508676 28509 1388 1388;1898;2170;2516;2563;4680;8183;28509 -6.15180769231 0.1386 -4.85407692308 -1.29773076923 -0.00459836062464 0.289393820935 37771 2925 2925;3250;3308;3738;3861;3909;7574;37771 0.0 0.506124010597 chr17:28623760-28623966- pseudogene extension MROH4P 6 new exons at 5' end 50111 530315 chr19:15432545-15432733- NoOverlap chr19 15432545 15432733 - 2.21699207643 63 0.250275086256 1.57726662405 0.639725452378 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15432544;189;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432545-15432733-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15432545-15432733&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0223097060414 -0.000248242045462 0.512703534092 15543356 15543544 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15543355;189;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432545-15432733-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15543356-15543544&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSALGAQLLPPGAAAPRAPEPRWPPPPPSAE*QKRRARRRRGRARGAPGSARPRGRPRPAPRARAPRHPPRRRRRPHPR Same 531778 chr19:15432545-15432733- 49840 49840 271 20 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.867724867725 1.01734449761 -1.24197301587 0.3892 -0.64923968254 -0.592733333333 -0.0331777350211 0.344147338802 62509 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -7.2946 0.2963 -5.18075555556 -2.11384444444 -0.0268463659356 0.401392771721 54223 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.114326914729 chr19:58350370-58350651- ENST00000599686.3,ENST00000263381.11,ENST00000599910.6 UTR5,CDSintron,UTR5intron coding exon(s) WIZ 2 cassette exons 50123 547323 chr21:8446309-8446497- NoOverlap chr21 8446309 8446497 - 1.741341264 63 0.188464179446 0.56935648548 1.17198477852 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8446308;189;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446309-8446497-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8446309-8446497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0187826513258 -0.00026898568929 0.582364183953 118515 118705 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118514;191;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446309-8446497-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118515-118705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPAGHGPGSARPPPRLPNHAPRTPSRPGADEPPRR*TGRRREPKKRGAPTGVARPPPHPHHHARGRR Same 548726 chr21:8446309-8446497- 44703 44703 5420 31 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.825396825397 1.07046476762 1.87233968254 0.1058 1.1176952381 0.754644444444 0.0381294139894 0.530283877675 26112 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 4.68450952381 0.1821 2.41342222222 2.27108730159 0.0881116978996 0.616659813467 12783 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.112207755997 chr16:67648052-67648314+ not annotated SSU-rRNA_Hsa 50172 543802 chr20:49340399-49340428+ NoOverlap chr20 49340399 49340428 + 7.09273988605 10 0.570782024872 3.21283998489 3.87989990115 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;49340398;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49340399-49340428%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A49340399-49340428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0174692908435 -0.000376075751585 0.590576130259 47956936 47956965 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;47956935;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49340399-49340428%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A47956936-47956965&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HCSCPVVHSLVFI Same 545193 chr20:49340399-49340428+ 53673 53673 -3501 0 1366 49318436 49340428 2047 2047;3687;18732;36370;50172;50543;57104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:49318436-49340428&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.357142857143 7.25013 0.7832 0.64437 6.60576 0.0912934182546 0.757808469212 16867 3238 3238;3385;16849;16867;36672;53077;54154 18.42097 0.5302 6.13623 12.28474 0.478801039904 0.749096493038 3618 70 70;869;3100;3618;7110;19303;47365 0.0 0.262817237145 chr8:73067341-73067458- pseudogene somatomedin B and thrombospondin type 1 domain containing (SBSPON) transcribed_unprocessed_pseudogene (ENSG00000283529) 50193 477129 chr10:30655672-30655722+ NoOverlap chr10 30655672 30655722 + 4.18037056222 17 0.402105745022 0.85424113931 3.32612942291 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;30655671;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A30655672-30655722%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A30655672-30655722&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00541277414504 -0.000401233635421 0.640635189057 30944601 30944651 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;30944600;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A30655672-30655722%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A30944601-30944651&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPGFSSYLGAFKFSEKQGNAR Same 479022 chr10:30655672-30655722+ 48994 48994 1199 0 23677 30655672 30655722 Best 50193 50193 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:30655672-30655722&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.411764705882 0.463636363636 3.73227647059 0.9166 -6.58377058824 10.3160470588 0.329740133627 1.02772606223 5017 Best 5017 5017 1.62831176471 0.5785 -12.3242764706 13.9525882353 0.308629015152 0.920935054879 4543 Best 4543 4543 0.0 0.0 ENST00000450581.1 NC pseudogene SVIL pseudogene extended (ENSG00000234814) 50208 482351 chr10:117542440-117542478- NoOverlap chr10 117542440 117542478 - 5.60495374065 13 0.712780604609 2.88876137367 2.71619236699 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117542439;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542440-117542478-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117542440-117542478&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0639520333203 -0.000426035189891 0.501055786949 119301951 119301989 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119301950;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542440-117542478-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119301951-119301989&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSLLPPTGRPGFSAPSPLAPSSLAPAAPAAASPPPSPPPLPPVSSSPPPPLLPPPPLLPPPLSPPTPPQPPPPPPPAPLPPGHPGPCR Same 484278 chr10:117542440-117542478- 50414 50414 -206 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.769230769231 1.17 5.08822307692 0.8796 -1.48249230769 6.57071538462 0.150776394882 0.797987612713 11524 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 2.1226 0.3931 -4.77578461538 6.89838461538 0.0611593832658 0.626205856162 16617 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000440007.5,ENST00000551288.5,ENST00000553456.4 NC,NCintron,AntiUTR5 not annotated putative regulatory region 50245 506367 chr15:40323681-40323779+ NoOverlap chr15 40323681 40323779 + 3.29892121165 33 0.459518046105 2.44507577383 0.853845437819 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;40323680;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323681-40323779%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A40323681-40323779&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0367148988083 -0.000491981117109 0.444680585517 40615882 40615980 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;40615881;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323681-40323779%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A40615882-40615980&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SARPLETRRPAAGQAAAERAAAWRRMGTRSRAAVAAVAAVAVAAAGK Same 508078 chr15:40323681-40323779+ 50439 50439 -194 0 1677 40313687 40324514 2488 2488;29639;48301;50245;50817;59923;62142;66647;67529;68396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:40313687-40324514&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.858585858586 1.2258254717 0.715260606061 0.4562 1.07313333333 -0.357872727273 -0.0370425208494 0.349176306219 64873 2234 2234;17663;29719;32124;51811;55466;56351;56933;64873;66727 -3.33865454545 0.36 -0.110872727273 -3.22778181818 -0.0391824945252 0.318999775163 64626 2097 2097;14593;22796;39510;43273;44464;48619;53899;64626;73766 0.0 0.239174927472 chr3:169821922-169822941+ not annotated putative regulatory region 50261 512297 chr16:72427777-72427803+ NoOverlap chr16 72427777 72427803 + 7.50775554445 9 0.946261115774 3.87370007568 3.63405546877 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72427776;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427777-72427803%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72427777-72427803&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0656152773088 -0.000531393777616 0.536508180045 72461676 72461702 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72461675;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427777-72427803%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72461676-72461702&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLWCDCMDGLQK Same 513941 chr16:72427777-72427803+ 49575 49575 686 0 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.9 2.44483333333 1.0 -1.87488888889 4.31972222222 0.0180738867515 0.579317668931 33365 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -10.0938666667 0.638 -8.34965555556 -1.74421111111 -0.0275119830164 0.23960817408 54823 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000564508.2,ENST00000561611.2 NC,AntiNCintron not annotated potentially spurious 50287 510490 chr16:3150674-3150751+ NoOverlap chr16 3150674 3150751 + 3.08602701242 26 0.630187040395 1.24011931217 1.84590770025 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3150673;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3150674-3150751%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3150674-3150751&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0292976913523 -0.000594074785565 0.532503298548 3200675 3200752 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3200674;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3150674-3150751%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3200675-3200752&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGAIQPQGRVA*WIRRLIPDQKIEGSSPFVVVAMLTFSSSST Same 512126 chr16:3150674-3150751+ 55603 55603 -5316 5 256 3144015 3150751 334 334;814;1899;3328;3506;5705;11798;14824;15461;50287;55094 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3144015-3150751&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.576923076923 1.12345679012 3.8891 0.9228 -0.321903846154 4.21100384615 0.291652466023 0.733303454544 5815 167 167;1186;1262;1661;1809;1880;2134;2541;2601;5815;43459 -0.570823076923 0.4149 -3.57172692308 3.00090384615 0.0619980843071 0.552938239927 16490 1889 1889;2882;2930;3314;3490;3499;6163;6623;16490;31726;59008 0.0 0.0211394065178 chr19:58409148-58409206+ pseudogene extension CASP16P pseudogene extended (ENSG00000228146) 50301 588877 chr9:35829283-35829318+ NoOverlap chr9 35829283 35829318 + 4.93523338934 12 0.72892220442 -1.16503333549 6.10026672482 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35829282;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35829283-35829318%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35829283-35829318&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0429078167136 -0.000612807256587 0.889974996741 35829280 35829315 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35829279;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35829283-35829318%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35829280-35829315&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FSAARSRPGLNSYPGPRPPPR Same 589821 chr9:35829283-35829318+ 52177 52177 -1876 0 277 35829249 35842438 362 362;425;536;1007;2241;12378;33483;41023;50301;66958 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35829249-35842438&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.694444444444 0.5 -5.83081666667 0.9788 -6.42998333333 0.599166666667 -0.0242641344675 0.328470996595 57000 527 527;571;572;815;1277;3226;54814;57000;63888;72554 -8.22304166667 0.4466 -14.3221416667 6.0991 -0.0263474243237 0.561197077753 53783 753 753;986;1017;1241;1441;19083;51774;53783;58586;72919 0.0 0.0771897223925 chr4:186105077-186105642+ ENST00000377991.8,ENST00000464519.6,ENST00000377996.5 UTR5,NC,UTR5intron coding exon(s) TMEM8B 5' extension by 5 exons 50357 547217 chr21:8401510-8401716- NoOverlap chr21 8401510 8401716 - 1.93874056519 69 0.209235910007 1.40898548002 0.529755085167 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8401509;207;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401510-8401716-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8401510-8401716&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0212347469755 -0.000751443850268 0.497404863694 117947 118153 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;117946;207;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401510-8401716-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A117947-118153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGRPAGGDRRGTGYPRPTEAPRRCRIVPPGRDSDLEAFSHNPTDGSFAPLAPQPSTYTKCLNLRFLSY Same 548619 chr21:8401510-8401716- 49746 49746 611 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.652173913043 0.863257243196 0.298936231884 0.0846 -0.011968115942 0.310904347826 0.00395284262619 0.45651272038 39527 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -1.09409130435 0.0743 -1.19303333333 0.0989420289855 -0.036751175082 0.512814852531 62775 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0957812072251 chr16:2210783-2210833- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 50391 549328 chr22:50674644-50674721+ NoOverlap chr22 50674644 50674721 + 2.01889236415 26 0.214808880751 0.238126890017 1.78076547413 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50674643;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674644-50674721%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50674644-50674721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0237897058809 -0.000824004099141 0.530314100756 51113072 51113149 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51113071;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674644-50674721%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51113072-51113149&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDGRPRGQRRGRARRHPGPAADGEPRRPGPGR Same 550699 chr22:50674644-50674721+ 46304 46304 4087 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.794871794872 0.975 -5.76643846154 0.4304 -8.28575769231 2.51931923077 -0.0270209384892 0.522028330698 58717 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -28.5650230769 0.5914 -30.8083884615 2.24336538462 0.00505888987313 0.279965732558 32919 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.302448613377 chr11:71147120-71147326- ENST00000262795.5 NC known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 50410 531217 chr19:40467118-40467162- NoOverlap chr19 40467118 40467162 - 4.59172660659 15 0.530632486458 0.380453408509 4.21127319808 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;40467117;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40467118-40467162-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A40467118-40467162&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00177295669933 -0.000869414137244 0.725919627215 40973025 40973069 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;40973024;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40467118-40467162-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A40973025-40973069&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSQIRMRRRASLSRAAAALSAPPGPPPAR Same 532688 chr19:40467118-40467162- 51641 51641 -1231 0 555 40458139 40467303 841 841;9776;45931;47832;50410;51155;58712 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:40458139-40467303&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.844444444444 1.58653846154 1.2891 0.6036 -7.48174 8.77084 0.0668734787086 0.953844120774 20165 868 868;6935;16896;20165;31195;46951;56302 0.41018 0.2867 -14.18478 14.59496 0.148428000839 0.926340988994 8091 3101 3101;8091;23506;32765;33228;42442;52654 0.0 0.0 ENST00000352632.7 AntiUTR5intron coding exon(s) BLVRB retained intron CDS 50454 546381 chr21:8398711-8398854+ NoOverlap chr21 8398711 8398854 + 2.05103751086 48 0.183794918746 1.75454585937 0.296491651485 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398710;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398711-8398854%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398711-8398854&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0173641516095 -0.000986036073824 0.435265223756 159114 159257 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159113;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398711-8398854%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159114-159257&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MGKKPGSLAWSRAWNASA*WATFGKQNWRCGMNRTPG*GARCRRSSDPR Same 547794 chr21:8398711-8398854+ 48991 48991 1463 29 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.645833333333 1.01886792453 -0.32779375 0.2731 0.59241875 -0.9202125 -0.0186761084594 0.328761944255 53236 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -2.27605208333 0.2158 -1.50369166667 -0.772360416667 -0.0356354703023 0.45913827739 61953 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.190913864695 chr3:9841908-9842082- ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 50455 546442 chr21:8442940-8443083+ NoOverlap chr21 8442940 8443083 + 2.05103751086 48 0.183794918746 1.75454585937 0.296491651485 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442939;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442940-8443083%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442940-8443083&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0173641516095 -0.000986036073824 0.435265223756 159114 159257 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159113;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442940-8443083%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159114-159257&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MGKKPGSLAWSRAWNASA*WATFGKQNWRCGMNRTPG*GARCRRSSDPR Same 547855 chr21:8442940-8443083+ 48992 48992 1463 29 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.645833333333 1.01886792453 -0.330929166667 0.282 0.5945375 -0.925466666667 -0.0198696347134 0.328245830613 54057 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -2.61351458333 0.2528 -1.35202083333 -1.26149375 -0.0312463124981 0.43741828347 58237 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 not annotated LSU-rRNA_Hsa 50463 487501 chr11:28566891-28566932- NoOverlap chr11 28566891 28566932 - 5.34356432302 14 0.94464680814 3.61341423009 1.73015009293 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;28566890;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A28566891-28566932-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A28566891-28566932&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.106651264424 -0.000999280364927 0.386589223998 28588438 28588479 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;28588437;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A28566891-28566932-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A28588438-28588479&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QIPRM*KVSLGLPMTC Same 489471 chr11:28566891-28566932- 51573 51573 -1110 5 1304 28566878 28566937 1963 1963;50463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:28566878-28566937&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52380952381 1.5 -0.0606642857143 0.9869 0.473857142857 -0.534521428571 -0.0285344862488 0.228763969134 59622 15982 15982;59622 -2.10598571429 0.7029 -3.55938571429 1.4534 -0.010981218701 0.407966885261 41529 9176 9176;41529 0.0 0.0 not annotated putative regulatory region 50502 514459 chr16:56191649-56191702- NoOverlap chr16 56191649 56191702 - 4.2356278441 18 0.549943626391 1.8512722883 2.38435555581 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;56191648;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191649-56191702-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A56191649-56191702&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0241174528235 -0.00107925379278 0.526604280188 56225561 56225614 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;56225560;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191649-56191702-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A56225561-56225614&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVLLVHVHRRSSAVGASAAPSPTPAR Same 516111 chr16:56191649-56191702- 52158 52158 -1656 0 1286 56191313 56194112 1942 1942;3444;31465;36646;38456;47043;50502;59548;64898;65693 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:56191313-56194112&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.814814814815 1.52941176471 -1.47233888889 0.7714 -1.2094 -0.262938888889 -0.0301804473525 0.275151632164 60646 5744 5744;16309;26528;60646;61684;66065;68363;69167;72514;73281 -10.1080277778 0.3946 -10.5157722222 0.407744444444 -0.0368447865264 0.36871636595 62845 7040 7040;17639;26908;52826;54474;57942;62845;66974;67638;71986 0.0 0.163735239546 chr16:89711327-89711412- ENST00000262493.10 AntiUTR5 not annotated putative regulatory region 50509 526799 chr19:3323526-3323591+ NoOverlap chr19 3323526 3323591 + 3.48010452904 22 0.237125893867 2.32884992033 1.15125460872 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;3323525;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3323526-3323591%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A3323526-3323591&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -8.26446675694e-05 -0.00110108942163 0.405279870963 3323524 3323589 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;3323523;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3323526-3323591%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A3323524-3323589&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALNDPFLGIVTSWRWRGGGGSSPATQSEQ Same 528245 chr19:3323526-3323591+ 50043 50043 466 0 556 3314755 3324737 842 842;35279;50509;51050 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:3314755-3324737&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.651515151515 0.152777777778 -14.9733227273 0.8152 -13.7349818182 -1.23834090909 0.0809846396835 0.363102470151 18142 493 493;18142;27310;38158 -16.8219454545 0.2902 -15.0371454545 -1.7848 0.00392695099125 0.269172905891 33432 29 29;23039;33432;48631 0.0 0.0 coding exon(s) NFIC alternative first exon 50543 543798 chr20:49318534-49318575+ NoOverlap chr20 49318534 49318575 + 4.6657356705 14 0.290197168362 -0.348985735859 5.01472140636 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;49318533;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49318534-49318575%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A49318534-49318575&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0078369738338 -0.00118585783152 0.805963748795 47935071 47935112 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;47935070;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49318534-49318575%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A47935071-47935112&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APALLLRPSVRRGAARDCCADYTR Same 545189 chr20:49318534-49318575+ 48123 48123 2420 0 1366 49318436 49340428 2047 2047;3687;18732;36370;50172;50543;57104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:49318436-49340428&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.785714285714 1.57894736842 -4.20941428571 0.4451 -8.92414285714 4.71472857143 -0.0184493842306 0.653892306766 53077 3238 3238;3385;16849;16867;36672;53077;54154 -3.61291428571 0.3739 -13.8436857143 10.2307714286 0.0471545123094 0.761705650275 19303 70 70;869;3100;3618;7110;19303;47365 0.0 0.016909444391 chr10:133272957-133273019- pseudogene somatomedin B and thrombospondin type 1 domain containing (SBSPON) transcribed_unprocessed_pseudogene (ENSG00000283529) 50578 546907 chr21:43363840-43363914+ NoOverlap chr21 43363840 43363914 + 1.97464001417 25 0.204652780957 -1.19060398467 3.16524399884 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;43363839;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A43363840-43363914%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A43363840-43363914&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0269855100104 -0.00128000205323 0.703716066088 44783720 44783794 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;44783719;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A43363840-43363914%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A44783720-44783794&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASSSSSAAGPWEGTGPAPVQPG*AAGR Same 548324 chr21:43363840-43363914+ 44730 44730 5848 2 23754 43363840 43363914 Best 50578 50578 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:43363840-43363914&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.706666666667 0.428571428571 -3.701428 0.3832 -5.248416 1.546988 -0.0214201360366 0.451758900675 55114 Best 55114 55114 -3.701428 0.1198 -5.248416 1.546988 -0.0428984334924 0.479115650014 67337 Best 67337 67337 0.0 0.0 ENST00000435702.1 NC not annotated potentially spurious 50607 493931 chr12:132121508-132121588+ NoOverlap chr12 132121508 132121588 + 2.6635369813 27 0.301047503596 -0.0676629697835 2.73119995108 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;132121507;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132121508-132121588%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A132121508-132121588&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00743937193578 -0.00135376621761 0.65999234992 132606053 132606133 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;132606052;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A132121508-132121588%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A132606053-132606133&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQEGGAEQAEADVTCTTREIERPWSSTAQVNTR Same 495922 chr12:132121508-132121588+ 46082 46082 4525 0 425 132104171 132144439 600 600;696;2328;2649;3293;5411;6565;8720;8776;12068;12968;21712;24534;32199;35640;48337;50607;55342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:132104171-132144439&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.567901234568 0.765595463138 4.19921851852 0.4674 0.395848148148 3.80337037037 0.070576833225 0.705697590173 19599 196 196;341;605;809;860;902;1240;1613;1919;1935;2230;2393;3677;5846;6505;8974;19599;35855 13.9640185185 0.6408 -1.93115925926 15.8951777778 0.861150360446 0.988336770273 2271 56 56;107;395;434;657;850;905;928;1060;1181;1603;1696;2271;2604;2715;2736;3237;35514 0.84563588126 chr12:131989964-131990104+ 0.632246882609 chr12:131989964-131990104+ ENST00000332441.7 NC redundant PhyloCSF signals are accounted for elsewhere on the list 50631 546256 chr21:8215542-8215589+ NoOverlap chr21 8215542 8215589 + 4.59358112607 16 0.369806210422 2.10366866924 2.48991245683 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8215541;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215542-8215589%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8215542-8215589&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000476784268757 -0.00139975414453 0.516695452918 115007 115054 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;115006;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215542-8215589%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A115007-115054&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SNHLVAGSLRSFPQDSWRSRRPDAPPPR Same 547669 chr21:8215542-8215589+ 51831 51831 -1200 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.625 0.918660287081 -0.571875 0.243 -0.73581875 0.16394375 0.0139433991327 0.296161299414 35113 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -0.85774375 0.1687 -2.48968125 1.6319375 -0.0210844393489 0.430803988299 48990 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0414706141314 chr3:9842199-9842243- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 50675 591155 chr9:137221819-137221875+ NoOverlap chr9 137221819 137221875 + 3.14175267596 19 0.250202985147 1.5672315861 1.57452108985 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;137221818;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A137221819-137221875%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A137221819-137221875&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0116919495054 -0.00149711555998 0.43927567715 140116271 140116327 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;140116270;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A137221819-137221875%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A140116271-140116327&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPGARPLTLTSAVGSRPPRASEPNPLPGPR Same 592110 chr9:137221819-137221875+ 49597 49597 1078 0 393 137217946 137221875 549 549;5833;50675 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:137217946-137221875&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.701754385965 0.782967032967 -13.1092157895 0.5291 -10.3150105263 -2.79420526316 0.0619537615589 0.263433060398 20938 985 985;20938;24037 -22.5426421053 0.3056 -17.9321210526 -4.61052105263 0.0674522497339 0.139500652426 15581 404 404;15581;35939 0.0 0.159476730774 chr15:90067138-90068595+ protein-coding gene protein-coding gene ENSG00000284976 50791 529174 chr19:51690041-51690097+ NoOverlap chr19 51690041 51690097 + 4.02700004138 19 0.326986383331 2.22137367569 1.8056263657 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51690040;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51690041-51690097%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51690041-51690097&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000262097217732 -0.00169689664887 0.461051804663 52193294 52193350 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52193293;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51690041-51690097%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52193294-52193350&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGGCLGCQTGQGQRRGQEMSGGGEAQHPCSLGDPGFQVPDPSSLR Same 530633 chr19:51690041-51690097+ 51336 51336 -545 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.684210526316 0.351851851852 2.83591578947 0.8015 0.964410526316 1.87150526316 0.0454471509042 0.464051819673 24192 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 -0.815552631579 0.3949 -3.58817368421 2.77262105263 0.0200203220943 0.499636656636 26977 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.178563431603 chr19:48956198-48956333+ ENST00000602324.1 AntiNCintron protein-coding gene protein-coding gene ENSG00000182310 50813 501037 chr14:28778378-28778530+ NoOverlap chr14 28778378 28778530 + 1.64781372454 51 0.931119279176 -0.332060754299 1.97987447884 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28778377;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28778378-28778530%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28778378-28778530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0100080395256 -0.00173918699623 0.67421447513 29247584 29247736 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29247583;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28778378-28778530%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29247584-29247736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IIVLMSVQSVRRGAPSCRVKQTTCTLTKSDC*SAK*CQYHFHCLSEIHRSDTRESNFPH Same 502929 chr14:28778378-28778530+ 44899 44899 5914 23 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.496732026144 0.954261954262 -2.16126862745 0.9787 -3.64126666667 1.47999803922 0.00838975998837 0.523953883694 37494 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -9.18941764706 0.8421 -12.071245098 2.88182745098 0.0181301265778 0.595307755795 27633 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.0 ENST00000552957.5,ENST00000399387.8 NC,NCintron not annotated putative regulatory region 50817 506368 chr15:40323700-40323777+ NoOverlap chr15 40323700 40323777 + 3.25737685653 26 0.446255964223 1.72336151508 1.53401534145 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;40323699;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323700-40323777%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A40323700-40323777&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0142491087069 -0.00174843210543 0.489311483046 40615901 40615978 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;40615900;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323700-40323777%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A40615901-40615978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GHWRPGGRRPGRRRRSARRRGGGWGRGAGR Same 508079 chr15:40323700-40323777+ 50565 50565 252 0 1677 40313687 40324514 2488 2488;29639;48301;50245;50817;59923;62142;66647;67529;68396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:40313687-40324514&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.897435897436 1.27173913043 -4.93395384615 0.4196 -6.17578846154 1.24183461538 -0.0232667025193 0.421808173379 56351 2234 2234;17663;29719;32124;51811;55466;56351;56933;64873;66727 -6.59402307692 0.3552 -10.3539307692 3.75990769231 -0.0152012414297 0.567462144352 44464 2097 2097;14593;22796;39510;43273;44464;48619;53899;64626;73766 0.0 0.262089642457 chr3:169821922-169822941+ not annotated putative regulatory region 50822 501025 chr14:28767102-28767275+ NoOverlap chr14 28767102 28767275 + 2.25966034727 58 0.276651854892 1.37689136444 0.882768982829 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28767101;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28767102-28767275%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28767102-28767275&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0160271318699 -0.00176251402906 0.541039679253 29236308 29236481 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29236307;174;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28767102-28767275%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29236308-29236481&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGCCFCYMTCQRPSLRSNCAAAGALSAAAAARAPRAPFGTHRSPPPAAPLSRSRAAAAVSPRRLGDAGHGR Same 502917 chr14:28767102-28767275+ 49649 49649 1173 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.798850574713 1.25123595506 0.469348275862 0.3605 -0.0889775862069 0.558325862069 0.00550359402159 0.487919750466 38808 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -6.6206862069 0.5344 -11.2890655172 4.66837931034 0.0883241311593 0.69056109222 12758 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.119027294592 chr17:18672864-18673055- ENST00000313071.6 UTR5 not annotated putative regulatory region 50891 574582 chr6:34235549-34235656- NoOverlap chr6 34235549 34235656 - 2.46143055128 36 0.47904554818 0.729455631019 1.73197492026 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34235548;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34235549-34235656-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34235549-34235656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00726233657653 -0.00193499378103 0.584183110741 34203326 34203433 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34203325;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34235549-34235656-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34203326-34203433&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGGERRAGPCSCRNVAGMFPVGVGSGRGVGPAPTRAAGSAR Same 575614 chr6:34235549-34235656- 52548 52548 -1657 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.75 0.617142857143 -1.49321388889 0.6867 -3.03116111111 1.53794722222 -0.0359775704192 0.514074420893 64278 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -3.3969 0.3274 -6.86233333333 3.46543333333 0.0230567832689 0.611076428828 25977 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0948035232102 chr3:52221217-52224312- protein-coding gene protein-coding gene ENSG00000186577 50926 490581 chr12:7620726-7620755+ NoOverlap chr12 7620726 7620755 + 5.75197988749 10 0.236896314946 2.31259005768 3.4393898298 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;7620725;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7620726-7620755%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A7620726-7620755&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0141130035093 -0.00202231290094 0.556308095321 7773322 7773351 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;7773321;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A7620726-7620755%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A7773322-7773351&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTCAGHVHTKLGQPEAMY Same 492557 chr12:7620726-7620755+ 55000 55000 -4074 0 1000 7620539 7637633 1528 1528;3369;23912;30341;31797;32931;38172;38567;44054;46877;50926 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:7620539-7637633&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 -1.01954 0.0793 -2.85207 1.83253 0.033780746252 0.388278772138 27370 Best 27370 27370;27482;29856;29976;30397;31757;32126;32399;32690;35677;37405 63.69406 0.6987 37.25999 26.43407 0.81864118329 0.756167699308 2416 310 310;676;714;1056;1511;1634;1765;1772;2213;2416;4434 0.0 0.780062020637 chrM:5904-7445+ pseudogene mitochondrial protein pseudogene region (ENSG00000284591) 51050 526798 chr19:3320404-3320466+ NoOverlap chr19 3320404 3320466 + 3.73249999789 21 0.413934393472 2.05269521014 1.67980478775 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;3320403;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3320404-3320466%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A3320404-3320466&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0115972618531 -0.002333149551 0.464878999442 3320402 3320464 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;3320401;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A3320404-3320466%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A3320402-3320464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CFVSPAPWPAPARPPPTLPTSEAPRSR Same 528244 chr19:3320404-3320466+ 50855 50855 195 0 556 3314755 3324737 842 842;35279;50509;51050 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:3314755-3324737&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.809523809524 0.828947368421 -1.6382047619 0.8435 -6.10615238095 4.46794761905 0.00690195462685 0.695426664186 38158 493 493;18142;27310;38158 -2.02117142857 0.3538 -6.75108571429 4.72991428571 0.0323793503364 0.594517567804 23039 29 29;23039;33432;48631 0.0 0.0 coding exon(s) NFIC alternative first exon 51136 475819 chr1:213988364-213988399- NoOverlap chr1 213988364 213988399 - 5.86248328288 12 0.547954019481 1.65176654731 4.21071673557 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;213988363;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213988364-213988399-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A213988364-213988399&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00662118522215 -0.00251318001415 0.677589204355 214161707 214161742 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214161706;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213988364-213988399-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214161707-214161742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEEEDTYAVQGAVGPSLSLSLSLSLSISLSLFFFPRQREENTRVHTR Same 477709 chr1:213988364-213988399- 53697 53697 -2561 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.611111111111 1.23076923077 2.155725 0.8036 -7.22718333333 9.38290833333 0.087352961469 0.958328390413 17352 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -0.2156 0.4065 -14.2846416667 14.0690416667 0.119751041049 0.886303744157 9845 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000625722.2,ENST00000366958.8,ENST00000607726.1,ENST00000471129.1 NC,AntiUTR5,AntiNC,AntiUTR5intron not annotated potentially spurious 51150 466065 chr1:86506331-86506381+ NoOverlap chr1 86506331 86506381 + 3.03264114639 17 0.237083911157 0.663405918681 2.36923522771 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;86506330;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A86506331-86506381%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A86506331-86506381&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.019281450231 -0.00254149729709 0.527516875496 86972014 86972064 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;86972013;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A86506331-86506381%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A86972014-86972064&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VFNVITWWDADPPLSSNDTSWIGGRWMLLSYPLTENLGWIK Same 467925 chr1:86506331-86506381+ 49192 49192 1958 0 374 86505354 86506381 521 521;1954;4201;8562;51150 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:86505354-86506381&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.509803921569 0.607142857143 -0.340535294118 0.014 0.403158823529 -0.743694117647 0.0392343348607 0.232067340381 25766 19199 19199;22222;23228;25766;26963 5.01005882353 0.125 2.16274117647 2.84731764706 0.0104127922502 0.486341240581 30592 2191 2191;3220;3562;5167;30592 0.0 0.0 not annotated fragments of a reteroviral ORF 51155 531219 chr19:40467274-40467303- NoOverlap chr19 40467274 40467303 - 7.22682005167 10 0.508537422751 5.14087029397 2.0859497577 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;40467273;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40467274-40467303-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A40467274-40467303&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0108258322164 -0.00254941717346 0.356910975495 40973181 40973210 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;40973180;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40467274-40467303-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A40973181-40973210&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEEGCSPGGDILGGGAVGPPSSSPGPAAASVAVSAAR Same 532690 chr19:40467274-40467303- 55585 55585 -4430 0 555 40458139 40467303 841 841;9776;45931;47832;50410;51155;58712 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:40458139-40467303&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 0.974025974026 11.38281 0.6475 8.04288 3.33993 0.0911033296694 0.453806943503 16896 868 868;6935;16896;20165;31195;46951;56302 6.79634 0.3063 1.35037 5.44597 0.0308167616227 0.529183281571 23506 3101 3101;8091;23506;32765;33228;42442;52654 0.0 0.0 ENST00000338932.7,ENST00000352632.7 AntiUTR5,AntiUTR5intron coding exon(s) BLVRB retained intron CDS 51176 558299 chr4:3505495-3505629+ NoOverlap chr4 3505495 3505629 + 1.75409780199 45 0.191144002781 -0.0616355647643 1.81573336675 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;3505494;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A3505495-3505629%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A3505495-3505629&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0143008424601 -0.002582056611 0.634923022202 3507222 3507356 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;3507221;135;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A3505495-3505629%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A3507222-3507356&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCLCLAGASCGRNVPCIPNHTWHNTMAEVRFQLHQQPTRLLSTTTSYPKPVYTSYPK Same 559275 chr4:3505495-3505629+ 45310 45310 5866 0 218 3500310 3505629 272 272;1209;38989;46929;51176 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:3500310-3505629&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.369054127939 -1.05759333333 0.0262 -1.76903555556 0.711442222222 0.0152990130023 0.465262783353 34533 442 442;813;28076;33984;34533 11.6881066667 0.558 -7.90575111111 19.5938577778 1.01930229473 1.06378519972 793 393 393;793;1580;2806;42450 0.0 0.737156123552 chr17:443164-443494- coding exon(s) DOK7 3 3' coding exons 51214 574892 chr6:41523976-41524047- NoOverlap chr6 41523976 41524047 - 2.77268754815 24 0.875670125378 -0.373274955899 3.14596250405 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;41523975;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A41523976-41524047-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A41523976-41524047&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0147824098713 -0.00263851910679 0.690044784888 41491714 41491785 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;41491713;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A41523976-41524047-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A41491714-41491785&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YTAREHNCVSIFQSSEKWRDNYQLESHSVI Same 575925 chr6:41523976-41524047- 50586 50586 628 0 15867 41523976 41531924 27214 27214;51214 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:41523976-41531924&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.458333333333 0.533333333333 -0.7251625 0.9988 -3.08072916667 2.35556666667 0.0332020060822 0.537343403956 27564 Best 27564 27564;61993 -6.32808333333 0.8037 -7.37144166667 1.04335833333 -0.0215884042012 0.444362112048 49410 Best 49410 49410;64817 0.0 0.0 ENST00000414386.5,ENST00000440194.1 NC,NCintron not annotated potentially spurious 51305 549330 chr22:50674759-50674944+ NoOverlap chr22 50674759 50674944 + 2.06452740777 62 0.26245419217 1.12103549079 0.943491916983 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50674758;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674759-50674944%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50674759-50674944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0138715872037 -0.00286079865174 0.552867114789 51113187 51113372 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51113186;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674759-50674944%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51113187-51113372&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPGIPPPPPGAPGARDPRPTATHPSPAASAGTLPIARAGPREARPLGRGFGRGSRRRGVPGAGTRAPDSFGGGPGLGTPHGAGGAGPR Same 550701 chr22:50674759-50674944+ 49173 49173 2132 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.865591397849 0.856462369006 -5.69930806452 0.4671 -5.27900967742 -0.420298387097 -0.0240441529629 0.270598680926 56829 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -9.15996612903 0.4079 -13.8137290323 4.65376290323 0.0112673051927 0.680545627499 30215 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.104873424837 chr12:109768012-109769288+ ENST00000262795.5 NCintron known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 51346 476452 chr1:244049245-244049547- NoOverlap chr1 244049245 244049547 - 1.53441780905 101 0.263354703518 0.4750722854 1.05934552365 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244049244;303;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244049245-244049547-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244049245-244049547&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0221979337333 -0.00295585028635 0.55227972296 244212547 244212849 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244212546;303;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244049245-244049547-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244212547-244212849&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVATASPMPRRASPRGLRATAPAREGPLPRRPPPPGATAAAPVPGAAAVPGATAAAAAPKPPPPARRPPHPRGATAAAPAGSPPRAAAAPARGGAARSREPAPRPTPQLQRPRPR Same 478346 chr1:244049245-244049547- 43441 43441 7905 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.831683168317 0.863305062285 1.1252970297 0.3861 -0.371087128713 1.49638415842 0.115570534476 0.559229927829 14344 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -4.17841089109 0.439 -6.02193069307 1.84351980198 0.102840598541 0.580602942118 11245 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0504030448435 chr1:32964051-32964685- ENST00000622512.1 AntiUTR5intron not annotated putative regulatory region 51355 547228 chr21:8433673-8433759- NoOverlap chr21 8433673 8433759 - 1.95557244996 29 0.210927564371 0.0408379467333 1.91473450322 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8433672;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8433673-8433759-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8433673-8433759&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0196561532598 -0.00297333690753 0.568629989806 149847 149933 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;149846;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8433673-8433759-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A149847-149933&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDPRGAEREGRSRSPRTSAPRPSRLGPGPGEHDVTTSITK Same 548631 chr21:8433673-8433759- 46581 46581 4774 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.793103448276 1.24494949495 -5.75911724138 0.2909 -8.13862068966 2.37950344828 -0.0109584368735 0.517506132534 47733 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -5.42572758621 0.386 -10.4375206897 5.01179310345 0.0262846472283 0.641179001116 24905 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.227384454421 chr9:127739682-127739888- not annotated SSU-rRNA_Hsa 51515 583870 chr8:32647141-32647170+ NoOverlap chr8 32647141 32647170 + 6.93857995272 10 0.870106050202 4.54625989795 2.39232005477 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;32647140;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A32647141-32647170%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A32647141-32647170&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0850263509801 -0.00334399275915 0.40061119268 32504660 32504689 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;32504659;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A32647141-32647170%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A32504660-32504689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGTCCSVMIQPLSAVVALTQQDAVAIVTTASPAAAAAAAAATAAGPPSAFTSPA Same 584800 chr8:32647141-32647170+ 48132 48132 3383 0 544 32647141 32647662 825 825;4050;51515 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:32647141-32647662&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.566666666667 0.0 5.93951 0.964 2.84585 3.09366 0.0969806991829 0.470591184505 16190 1922 1922;4952;16190 1.62414 0.8947 2.54244 -0.9183 -0.0107306108662 0.284510997283 41386 4056 4056;41386;58906 0.0 0.0 ENST00000287842.7,ENST00000522569.1 CDSintron,NCintron under investigation; now made coding Finds a potential 62aa single exon CDS in a 5' UTR exon of NRG1 [chr8:32647202-32647390]. This CDS was initially considered potentially suspect as it overlaps with a highly conserved promoter region, and is fairly low complexity in terms of amino acid sequence. However, the CDS is conserved across to amphibians with an almost complete absence of non-3mer indels.Following the analytical stage of this work the decision was made to annotate a protein-coding gene, and ENSG00000286131 appeared in GENCODEv31. 51543 579743 chr7:143620652-143620696+ NoOverlap chr7 143620652 143620696 + 3.37051998774 15 0.191408153404 -2.42904665867 5.79956664642 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;143620651;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143620652-143620696%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A143620652-143620696&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0149636767382 -0.00340930797572 0.900025947798 143317745 143317789 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;143317744;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A143620652-143620696%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A143317745-143317789&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGPPQGRLRLTPACAPPPGQPSFR Same 580713 chr7:143620652-143620696+ 48166 48166 3377 0 552 143620652 143624390 837 837;1457;51543 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:143620652-143624390&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 0.602006688963 -9.71825333333 0.3425 -7.76247333333 -1.95578 0.0347916010711 0.228332365704 27038 681 681;1141;27038 -9.48654666667 0.3338 -7.77253333333 -1.71401333333 -0.021310919279 0.277162789307 49179 538 538;842;49179 0.0 0.0 pseudogene transient receptor potential cation channel, subfamily M, member 8 channel-associated factor (TRPM8) pseudogene existed on the wrong strand (ENSG00000283537) 51664 547181 chr21:8395600-8395782- NoOverlap chr21 8395600 8395782 - 1.89420818745 61 0.225696192874 0.735057343714 1.15915084374 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395599;183;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395600-8395782-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395600-8395782&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0127650576913 -0.0036570630398 0.580362586228 155990 156172 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155989;183;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395600-8395782-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155990-156172&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPPAAHPEEPGGTPGGD*SASDAQTGVAPGGTRGRKCVRSVDDQCVLQFTLILAASCVLHRRTSRVIHR*ESYEVDLAR Same 548585 chr21:8395600-8395782- 47543 47543 4121 9 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.590163934426 1.31971153846 -4.3751 0.2781 -5.37784754098 1.00274754098 -0.0450087237469 0.422260878941 69229 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -16.9442016393 0.6463 -18.7140885246 1.76988688525 -0.0614509059721 0.520335334538 73502 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.018335142889 chr2:25131368-25131503+ ENST00000613359.1,ENST00000623860.2 AntiNC,AntiNCintron not annotated SSU-rRNA_Hsa 51665 547274 chr21:8439816-8439998- NoOverlap chr21 8439816 8439998 - 1.89420818745 61 0.225696192874 0.735057343714 1.15915084374 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439815;183;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439816-8439998-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439816-8439998&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0127650576913 -0.0036570630398 0.580362586228 155990 156172 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155989;183;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439816-8439998-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155990-156172&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPPAAHPEEPGGTPGGD*SASDAQTGVAPGGTRGRKCVRSVDDQCVLQFTLILAASCVLHRRTSRVIHR*ESYEVDLAR Same 548677 chr21:8439816-8439998- 47544 47544 4121 9 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.590163934426 1.31971153846 -4.56104918033 0.3052 -5.62489180328 1.06384262295 -0.0453865189264 0.423308507747 69392 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -15.6160803279 0.6429 -18.4011622951 2.78508196721 -0.0492203081762 0.56719844962 71028 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0173039861643 chr16:88646755-88646825- ENST00000619471.1 AntiNC not annotated SSU-rRNA_Hsa 51680 570021 chr5:176154919-176154963- NoOverlap chr5 176154919 176154963 - 4.36553334792 15 0.279697871366 0.925273373723 3.4402599742 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;176154918;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176154919-176154963-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A176154919-176154963&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00456834189603 -0.00368679741636 0.632865158927 175581922 175581966 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;175581921;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A176154919-176154963-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A175581922-175581966&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AIACGFSGGHPYPAVTGEHVQNSVAVEFGTK Same 571039 chr5:176154919-176154963- 51415 51415 265 0 6143 176146963 176156969 8635 8635;13435;25692;32992;35007;45549;51680 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:176146963-176156969&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.577777777778 0.28125 2.74221333333 0.6451 -5.12961333333 7.87182666667 0.0930540276257 0.906328823396 16641 17 17;170;306;1893;3127;16509;16641 7.68477333333 0.4816 -11.0736733333 18.7584466667 0.479542002761 1.01447869762 3612 11 11;134;388;800;3031;3612;16194 1.10398190698 chr18:13055780-13056698+ 1.11116365129 chr18:13055780-13056698+ ENST00000515403.5,ENST00000510029.1 NC,AntiNCintron pseudogene centrosomal protein 192kDa (CEP192) pseudogene (ENSG00000283559) 51719 512315 chr16:72793442-72793480+ NoOverlap chr16 72793442 72793480 + 4.42696156639 13 0.91439688716 -1.37762308579 5.80458465219 ENST00000268489.9,ENST00000397992.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72793441;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72793442-72793480%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72793442-72793480&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0770958219715 -0.00377178993916 0.876848082009 72827341 72827379 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72827340;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72793442-72793480%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72827341-72827379&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLVGLFNPVQLLLSHQLTYGGWVK Same 513959 chr16:72793442-72793480+ 53092 53092 -1373 0 1044 72786749 72802320 1595 1595;21079;37333;39725;51719;54149;65275;67341;70055 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72786749-72802320&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.564102564103 0.65 2.21797692308 1.0 -7.22269230769 9.44066923077 0.203358757739 0.969145204787 8633 2453 2453;8633;10458;20402;20517;20622;22628;49851;70811 -11.1730384615 1.0 -35.1411153846 23.9680769231 0.0486518340975 1.03384334536 19008 1956 1956;9416;10906;18989;19008;25678;39101;45598;59430 0.0 0.0 ENST00000268489.9 AntiCDS not annotated putative regulatory region 51731 484852 chr11:64251466-64251507+ NoOverlap chr11 64251466 64251507 + 5.21919282845 14 0.401616366391 3.8845856062 1.33460722225 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64251465;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64251466-64251507%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64251466-64251507&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0025400890564 -0.00379939997643 0.337579061315 64018938 64018979 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64018937;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64251466-64251507%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64018938-64018979&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPGGPAPSPPRPGPAEALVGPGQTGGR Same 486799 chr11:64251466-64251507+ 55220 55220 -3489 0 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.952380952381 0.837606837607 -2.69104285714 0.4333 -3.46141428571 0.770371428571 -0.00571639465679 0.335197607901 44543 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 -6.62860714286 0.2995 -4.51946428571 -2.10914285714 -0.0226822408731 0.265547421296 50391 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.149105840787 chr17:45121211-45121343- under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 51735 478477 chr10:100870348-100870389+ NoOverlap chr10 100870348 100870389 + 5.19432863167 14 0.929622121222 2.79440715909 2.39992147258 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100870347;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100870348-100870389%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100870348-100870389&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0896854807965 -0.00380570769758 0.476117934815 102630105 102630146 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102630104;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100870348-100870389%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102630105-102630146&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGSACARPFGERLCFMVRG*KMEMLISSR Same 480372 chr10:100870348-100870389+ 52037 52037 -302 4 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 1.4 -3.48163571429 0.9961 -4.42674285714 0.945107142857 -0.0491330431281 0.350894174168 70729 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 -5.55602857143 0.3779 -5.39582142857 -0.160207142857 -0.0320253016107 0.339259648504 58930 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 51765 547222 chr21:8401746-8401985- NoOverlap chr21 8401746 8401985 - 1.91462625717 80 0.226512932021 1.75290999822 0.161716258945 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8401745;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401746-8401985-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8401746-8401985&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0193774058333 -0.00386527965797 0.443985592399 118183 118422 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118182;240;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401746-8401985-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118183-118422&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARTNPCVEG*LSIDRSEGAALLRTKPRPRSRSSTNGLAPGSPRTCGA*RARGRPPLRPRPVSQDEGHSAPDPGPGARRGTRPPAR Same 548624 chr21:8401746-8401985- 55019 55019 -3254 42 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6875 1.16367910667 0.34766875 0.0987 0.650575 -0.30290625 -0.00457549810591 0.387881722455 43893 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -0.60557 0.1113 -0.0261025 -0.5794675 -0.022114929056 0.484847970242 49887 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0 ENST00000617236.1,ENST00000623860.2 AntiNC,AntiNCintron not annotated SSU-rRNA_Hsa 51849 584684 chr8:78644641-78644835+ NoOverlap chr8 78644641 78644835 + 0.867352296527 65 0.126106895317 -2.00044152135 2.86779381788 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78644640;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78644641-78644835%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78644641-78644835&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0338521318002 -0.00402317296044 0.795407064894 79556876 79557070 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79556875;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78644641-78644835%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79556876-79557070&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELTKKQKVFFKTVQQLLKAIQFTVESGALHKLVLLIWQECPWFPDQGTLELWEQVGCCLKRGFEQGNFTKPPGVWYALR Same 585615 chr8:78644641-78644835+ 36497 36497 15352 0 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.430769230769 0.1171875 -0.487681538462 0.014 -1.18630307692 0.698621538462 0.00567649572171 0.48080892521 38743 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 -0.439761538462 0.0822 -3.83983076923 3.40006923077 -0.0323189600783 0.656320976838 59180 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 51895 463034 chr1:6447414-6447458+ NoOverlap chr1 6447414 6447458 + 5.04230661392 15 0.521777167417 2.87553336223 2.16677325169 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;6447413;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6447414-6447458%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A6447414-6447458&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0200258394467 -0.00413419467209 0.458204359206 6507474 6507518 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;6507473;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6447414-6447458%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A6507474-6507518&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAGGLAQKTNPAVSHFLQREPGR Same 464898 chr1:6447414-6447458+ 53401 53401 -1506 0 194 6447414 6467425 235 235;370;505;560;639;1215;12903;51895 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:6447414-6467425&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 1.03846153846 -4.05606666667 0.9447 -4.57040666667 0.51434 -0.043980298144 0.324221871596 68713 395 395;511;536;884;1170;1602;50220;68713 -4.48243333333 0.438 -9.74552666667 5.26309333333 -0.00147829077098 0.567718329492 36104 638 638;851;876;1267;1741;2000;23707;36104 0.0 0.0538800381732 chr7:149780238-149780478+ ENST00000632803.1,ENST00000632593.1,ENST00000377828.5 UTR5,NC,CDSintron coding exon(s) ESPN very large alternative final exon 51913 546374 chr21:8397815-8397967+ NoOverlap chr21 8397815 8397967 + 1.52799215124 51 0.182555946007 1.50594705314 0.0220450980991 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397814;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397815-8397967%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397815-8397967&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0169247217907 -0.00418293998971 0.403686710895 158219 158371 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158218;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397815-8397967%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158219-158371&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGAAAAVAAAAAAAGPKPPPSVTAPPAAALAESRGRGSETRRRALPPPGAHPRGESPARGVSPAGARR Same 547787 chr21:8397815-8397967+ 51062 51062 851 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.816993464052 0.891891891892 -1.21099607843 0.2383 -3.15424117647 1.94324509804 -0.00700970040794 0.586973384985 45294 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 0.903537254902 0.3082 -2.14604705882 3.04958431373 0.108205938416 0.636093836972 10765 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.216089556788 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 51914 546435 chr21:8442045-8442197+ NoOverlap chr21 8442045 8442197 + 1.52799215124 51 0.182555946007 1.50594705314 0.0220450980991 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442044;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442045-8442197%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442045-8442197&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0169247217907 -0.00418293998971 0.403686710895 158219 158371 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158218;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442045-8442197%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158219-158371&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGAAAAAAVAAAAAAAGPKPPPSVTAPPAAALAESRGRGSETRRRALPPPGAHPRGESPARGVSPAGARR Same 547848 chr21:8442045-8442197+ 51063 51063 851 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.816993464052 0.891891891892 -1.04443137255 0.239 -2.2402627451 1.19583137255 -0.0106435978979 0.518921676 47520 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -0.692925490196 0.2921 -5.06686470588 4.37393921569 0.0931204920098 0.69022401894 12220 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0231061326349 chr16:376136-376455- not annotated LSU-rRNA_Hsa 51960 591954 chr9:41047538-41047564- NoOverlap chr9 41047538 41047564 - 6.44108880891 9 0.670298313878 -1.28401108583 7.72509989474 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;41047537;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41047538-41047564-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A41047538-41047564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0490459326204 -0.00428991136568 0.968238672141 70999465 70999439 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;70999464;-25;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A41047538-41047564-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A70999465-70999439&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QEFDLENKFKPFRGNR Different 592909 chr9:41047538-41047690- 276 276 51684 0 171 41039613 41053896 205 205;261;1694;3615;17582;51960 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:41039613-41053896&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.0 12.9250666667 0.8976 3.39023333333 9.53483333333 0.338462611799 0.886136320939 4863 187 187;248;261;371;844;4863 33.5141777778 0.9468 6.69016666667 26.8240111111 0.972104604059 0.996511956392 1550 1512 1512;1518;1550;1553;1648;1663 0.811809779188 chr9:68384398-68384544+ 0.827500834478 chr9:68384398-68384544+ ENST00000613141.1,ENST00000617940.1 NC,AntiNCintron pseudogene PGM5P2 unprocessed pseudogene (ENSG00000277778) 52041 512652 chr16:85169884-85170015+ NoOverlap chr16 85169884 85170015 + 2.97207727381 44 0.219069269023 3.00647271492 -0.0343954411166 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;85169883;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85169884-85170015%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A85169884-85170015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0169155640541 -0.00442042456164 0.378974144508 85203490 85203621 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;85203489;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85169884-85170015%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A85203490-85203621&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARPHAGGQAHVLAQAAPPVRRGRRRPPWRRRGPPRVERRLRAGQRHRRRRRGRRWRPPAARGR Same 514297 chr16:85169884-85170015+ 52205 52205 -164 0 247 85169288 85171795 315 315;1225;4037;33765;48559;52041;63398 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:85169288-85171795&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.833333333333 1.232 -4.65853636364 0.5529 -4.87410909091 0.215572727273 -0.038469906671 0.361367041774 65700 686 686;1182;1519;35870;37426;44051;65700 -12.03025 0.6384 -10.3656704545 -1.66457954545 -0.0661290996207 0.380402856726 73658 912 912;1310;2378;23905;34536;69575;73658 0.0 0.189128920096 chr17:56510473-56511269+ coding exon(s) GSE1 5' extension 52105 476442 chr1:244048531-244048629- NoOverlap chr1 244048531 244048629 - 2.95765760247 33 0.369638245582 1.68941507669 1.26824252578 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244048530;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048531-244048629-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244048531-244048629&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00508780336701 -0.00453765461255 0.5022504049 244211833 244211931 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244211832;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048531-244048629-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244211833-244211931&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGWGGGGGGGAGAGEGEGRGREDAPRTHAAAPARCSPHPQSAPLLPLPPSLR Same 478336 chr1:244048531-244048629- 51108 51108 997 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.808080808081 0.8125 -1.64106060606 0.4407 -5.69042727273 4.04936666667 -0.019699570918 0.727493896753 53949 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -6.02616363636 0.3666 -11.5721606061 5.5459969697 0.0302847505239 0.678734453311 23669 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0616847590269 chr19:40369908-40370011+ not annotated putative regulatory region 52129 501021 chr14:28766577-28766723+ NoOverlap chr14 28766577 28766723 + 2.73363677154 49 0.229894603756 2.6060837045 0.127553067037 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28766576;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28766577-28766723%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28766577-28766723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0195442425527 -0.00458116167966 0.417552553334 29235783 29235929 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29235782;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28766577-28766723%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29235783-29235929&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AASGSEARGEGEASARGGGSRRAGRGWVGPAPPIGRRRERRSRTPPALIGPAVGK Same 502913 chr14:28766577-28766723+ 52796 52796 -667 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.802721088435 0.92508240935 -3.22087346939 0.4947 -1.88096122449 -1.3399122449 -0.0381560537796 0.249953056927 65511 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -12.6240795918 0.3859 -7.50678979592 -5.11728979592 -0.00132407694838 0.260955514483 36040 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.0 ENST00000313071.6 UTR5 not annotated putative regulatory region 52166 530331 chr19:15449916-15450026- NoOverlap chr19 15449916 15450026 - 2.61385411668 37 0.404151691174 1.19099463079 1.42285948589 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15449915;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15449916-15450026-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15449916-15450026&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00118947489004 -0.00467417415982 0.546960287754 15560727 15560837 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15560726;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15449916-15450026-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15560727-15560837&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TSPSWRRGGAVALRSRRRAGGAGRRGERFKGTMSPERWRRR Same 531794 chr19:15449916-15450026- 51515 51515 651 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.792792792793 1.25535714286 -1.40868918919 0.5963 -4.48042162162 3.07173243243 -0.019207986173 0.659973729062 53632 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -4.89929189189 0.3061 -10.9454459459 6.04615405405 0.0414300481396 0.719554648487 20641 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.126355880252 chr10:5525086-5525535+ ENST00000263381.11 UTR5 coding exon(s) WIZ 2 cassette exons 52228 501018 chr14:28765760-28765786+ NoOverlap chr14 28765760 28765786 + 6.83443315824 9 0.733775844968 0.423188952936 6.4112442053 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28765759;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28765760-28765786%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28765760-28765786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0110457710434 -0.00479039772347 0.864806536974 29234966 29234992 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29234965;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28765760-28765786%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29234966-29234992&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTSSHPARERRSGAGEK Same 502910 chr14:28765760-28765786+ 53562 53562 -1334 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 1.35 13.7031 0.8879 5.45376666667 8.24933333333 0.321043303232 0.801748312831 5183 Best 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 10.8539111111 0.3362 -0.433411111111 11.2873222222 0.127725909423 0.737830673543 9292 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.0 ENST00000313071.6 UTR5 not annotated putative regulatory region 52229 486538 chr11:125948547-125948585+ NoOverlap chr11 125948547 125948585 + 5.23048471946 13 0.701598089101 1.1016768859 4.12880783356 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;125948546;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125948547-125948585%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A125948547-125948585&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0220318450757 -0.00479294787845 0.687355077477 125818442 125818480 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;125818441;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A125948547-125948585%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A125818442-125818480&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSSDGAFLDVICESDCGGGAVR Same 488500 chr11:125948547-125948585+ 53828 53828 -1599 0 205 125947712 125955911 249 249;397;448;559;808;866;910;1028;1629;2984;4791;7328;11362;28222;52229 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:125947712-125955911&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.589743589744 0.619047619048 13.1091230769 0.8574 8.86478461538 4.24433846154 0.331555772296 0.560076252251 4986 367 367;595;782;893;924;961;1207;1219;1547;2089;2716;2951;4308;4986;6290 28.4869923077 0.7846 4.91838461538 23.5686076923 0.996051005564 1.00489579359 1171 34 34;49;55;221;293;521;759;907;1007;1171;1180;1439;2219;2419;4132 0.0 0.0725083431882 chr19:51340433-51340726- protein-coding gene protein-coding gene ENSG00000283703 52279 485481 chr11:73343251-73343277+ NoOverlap chr11 73343251 73343277 + 7.61487773475 9 0.800869764248 5.06361101733 2.55126671741 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;73343250;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A73343251-73343277%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A73343251-73343277&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0664867609814 -0.00490325097208 0.394819493875 73054296 73054322 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;73054295;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A73343251-73343277%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A73054296-73054322&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DMGPAAASGEPAGGSSTDAEEPGEAQVR Same 487437 chr11:73343251-73343277+ 48918 48918 3361 0 528 73343137 73343277 791 791;52279 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:73343137-73343277&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.519230769231 14.9180888889 0.9509 10.4072 4.51088888889 0.378955191222 0.49871308335 4271 1718 1718;4271 9.3831 0.4941 7.5613 1.8218 0.0612507460212 0.364081495416 16601 827 827;16601 0.0 0.0 ENST00000536170.1,ENST00000263674.3 NC,CDSintron coding exon(s) ARHGEF17 alternative first exon 52357 546425 chr21:8441130-8441471+ NoOverlap chr21 8441130 8441471 + 1.74358246632 114 0.183794918746 1.2928938633 0.450688603024 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441129;342;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441130-8441471%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441130-8441471&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00940359663632 -0.00505545269538 0.486035380589 157304 157645 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157303;342;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441130-8441471%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157304-157645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGAIPSVRPPSGPSPSETRPQIRRGDPLNLSILVSGGEETNQDSLSNGE*TGKSPAPNPRPAAGRGTCGVRKTRSPAPLVGGPSPSDRGPARGRCEAGSGPRRAGPGSSRSRVAWECSPKRVVNSI Same 547838 chr21:8441130-8441471+ 56579 56579 -4222 38 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.669590643275 0.991758241758 -1.26947807018 0.2924 -2.38609298246 1.11661491228 -0.00149449253846 0.501196781176 42252 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -6.50670526316 0.3895 -7.06505877193 0.558353508772 0.0176271542639 0.529143928738 27799 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0496131333073 chr16:376544-376812- not annotated LSU-rRNA_Hsa 52359 518069 chr17:48596924-48596953+ NoOverlap chr17 48596924 48596953 + 6.1011202246 10 0.738059052415 -0.0904399946332 6.19156021923 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48596923;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48596924-48596953%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48596924-48596953&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0185804789114 -0.00506368366139 0.866148364953 46674286 46674315 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46674285;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48596924-48596953%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46674286-46674315&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSLNSHLSLGGGAGQVCLFLVASCLSLPFHPSCSHPPSSPQPNDK Same 519470 chr17:48596924-48596953+ 53342 53342 -983 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.566666666667 0.0 3.86025 0.9399 1.25451 2.60574 0.0154441466641 0.437595833855 34458 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 0.50854 0.3973 -5.42045 5.92899 0.00118141023219 0.559660756391 34773 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0866384013279 chr17:7847546-7849728+ ENST00000429755.8,ENST00000470193.3,ENST00000225648.3,ENST00000552000.2 NCintron,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 52387 517329 chr17:39410507-39410590+ NoOverlap chr17 39410507 39410590 + 2.83802860975 28 0.913404505771 1.3080677752 1.52996083455 ENST00000300651.10,ENST00000394287.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;39410506;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A39410507-39410590%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A39410507-39410590&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0826221258652 -0.00513007269501 0.505628537849 37566760 37566843 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;37566759;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A39410507-39410590%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A37566760-37566843&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WDPPERCWLV*WYHSLGCCLWSCHTLGC Same 518725 chr17:39410507-39410590+ 51028 51028 1359 11 535 39402672 39410654 809 809;14508;23729;24139;52387 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:39402672-39410654&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.144827586207 -0.457725 1.0 -0.793646428571 0.335921428571 0.010462325629 0.380384366824 36588 6041 6041;10767;32183;36588;67635 -29.1639785714 0.9215 -26.2809678571 -2.88301071429 0.00561145436204 0.173436687987 32663 4722 4722;27606;32663;35437;64135 0.0 0.0 ENST00000300651.10,ENST00000577831.5 AntiCDS,AntiNC not annotated putative regulatory region 52390 539422 chr2:86227370-86227399- NoOverlap chr2 86227370 86227399 - 6.90557000637 10 0.749419394217 3.55866005421 3.34690995216 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;86227369;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A86227370-86227399-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A86227370-86227399&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0542622772221 -0.00513295344608 0.525192942562 86454493 86454522 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;86454492;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A86227370-86227399-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A86454493-86454522&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WCPYPIPTVCTCCSTCRTWK Same 540800 chr2:86227370-86227399- 50683 50683 1707 0 91 86219982 86227399 108 108;52390 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:86219982-86227399&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.633333333333 0.0 13.03261 1.0 3.38507 9.64754 0.599337972784 0.902776864638 2548 314 314;2548 21.96724 0.4871 4.70604 17.2612 0.570736405933 0.886757414135 3260 2523 2523;3260 0.0 0.0 ENST00000165698.9 CDSintron coding exon(s) REEP1 two cassette exons 52414 585660 chr8:144466306-144466353+ NoOverlap chr8 144466306 144466353 + 4.56429994851 16 0.57650873579 1.63710624352 2.92719370499 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144466305;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144466306-144466353%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144466306-144466353&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0189233439047 -0.00517124512311 0.574758299923 145691689 145691736 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145691688;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144466306-144466353%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145691689-145691736&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APVSSTPVPALAFQPWEPGRGGGRREHAHRHCGGR Same 586598 chr8:144466306-144466353+ 54480 54480 -2066 0 455 144462230 144473371 652 652;52414;53196;56283;57650;72805 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144462230-144473371&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.833333333333 1.25 -6.1355125 0.7676 -6.40945 0.2739375 -0.00224801249611 0.31944481795 42652 886 886;41693;42652;43967;45511;56412 -26.341075 0.5436 -23.58558125 -2.75549375 0.0490154226989 0.138453211885 18941 1535 1535;18941;28339;51248;53436;61641 0.0365452616019 chr8:144466760-144466838+ 0.138996684653 chr3:121695478-121698929- ENST00000301332.2 UTR5 coding exon(s) KIFC2 frame corrected in final exon 52586 589757 chr9:106621544-106621609+ NoOverlap chr9 106621544 106621609 + 2.97118186409 22 0.75617886348 -0.266600080512 3.2377819446 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;106621543;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A106621544-106621609%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A106621544-106621609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0190796065644 -0.00551557915223 0.68441359009 109383825 109383890 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;109383824;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A106621544-106621609%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A109383825-109383890&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GQPVRFLDARHHRFFFLPLNWKDRPTPFLASWYIIR Same 590704 chr9:106621544-106621609+ 55510 55510 -2924 0 11253 106616132 106621609 17354 17354;52586 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:106616132-106621609&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.454545454545 0.916666666667 0.0761227272727 0.963 -5.79685454545 5.87297727273 0.137630261194 0.824934276268 12480 Best 12480 12480;22661 -3.22154545455 0.5091 -9.42793636364 6.20639090909 0.0771363568791 0.660460017877 14179 Best 14179 14179;18990 0.0 0.0 ENST00000444985.6 NCintron not annotated potentially spurious 52795 594043 chr9:136245811-136245885- NoOverlap chr9 136245811 136245885 - 2.87082008958 25 0.407591668574 0.665363997817 2.20545609176 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136245810;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136245811-136245885-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136245811-136245885&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00891697482267 -0.00604752497899 0.574511595377 139137657 139137731 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139137656;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136245811-136245885-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139137657-139137731&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGAEQNWARGGGAGRAGARDGGCQGESSARRRHFQHGGGR Same 594999 chr9:136245811-136245885- 50749 50749 2046 0 518 136245441 136267514 774 774;1246;1671;1737;14484;26677;40966;49975;52795 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136245441-136267514&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.8 1.23384253819 -1.569996 0.477 -4.538212 2.968216 -0.0348152507313 0.592543865597 63557 109 109;1226;1522;2295;2801;2860;36147;58996;63557 -4.515424 0.4268 -9.164436 4.649012 0.0302815597785 0.608556038598 23671 1329 1329;2089;2472;2567;3628;6432;23671;29069;54815 0.0 0.125210731129 chr8:22621422-22621568- ENST00000358701.9 UTR5 not annotated putative regulatory region 52845 546279 chr21:8218560-8218667+ NoOverlap chr21 8218560 8218667 + 2.34668886165 36 0.205722133211 2.6184249838 -0.27173612215 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8218559;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8218560-8218667%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8218560-8218667&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00803627053436 -0.00616345127117 0.314433941579 118035 118142 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118034;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8218560-8218667%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118035-118142&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNASKSESRPGGTIRQRRGASVGLG*PVPRLSPPAGRPPLHAPR None NA NA 10 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.722222222222 1.07641196013 1.45943888889 0.0802 0.718727777778 0.740711111111 0.0311464541644 0.468156049471 28249 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -0.340875 0.0901 -0.277816666667 -0.0630583333333 -0.0466467054353 0.464949726079 69749 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 52846 546451 chr21:8445830-8445937+ NoOverlap chr21 8445830 8445937 + 2.34668886165 36 0.205722133211 2.6184249838 -0.27173612215 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8445829;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445830-8445937%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8445830-8445937&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00803627053436 -0.00616345127117 0.314433941579 118035 118142 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118034;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445830-8445937%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118035-118142&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNASKSESRPGGTIRQRRGASVGLG*PVPRLSPPAGRPPLHAPR None NA NA 10 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.722222222222 1.07641196013 1.45943888889 0.0802 0.718727777778 0.740711111111 0.0311464541644 0.468156049471 28250 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 0.193616666667 0.0969 -0.518858333333 0.712475 -0.0405594314198 0.499182643805 65653 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.51341580857 chr2:27137091-27138329- not annotated LSU-rRNA_Hsa 52910 547238 chr21:8435577-8435726- NoOverlap chr21 8435577 8435726 - 1.3937399681 50 0.203489127947 -1.16940600559 2.56314597369 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8435576;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8435577-8435726-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8435577-8435726&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0117171432894 -0.00631878995044 0.746503616406 151751 151900 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;151750;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8435577-8435726-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A151751-151900&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPPPPPPQSRPVPRNRLLPRTRRRPTPGTLREAHRAPRGAPPTRSPRRAPGDADAGPISGR Same 548641 chr21:8435577-8435726- 42816 42816 10094 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 1.08754027927 3.78572 0.2192 1.740494 2.045226 0.0989115314395 0.658534060327 15963 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 6.678582 0.2409 5.180294 1.498288 0.155545172635 0.573886836587 7768 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.121670137755 chr12:48996740-48998666- ENST00000616418.1 AntiNC not annotated SSU-rRNA_Hsa 52929 546354 chr21:8395331-8395453+ NoOverlap chr21 8395331 8395453 + 1.92989756131 41 0.198612545521 1.9070951299 0.022802431409 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395330;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395331-8395453%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395331-8395453&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0118717458335 -0.0063434992099 0.374440509806 155720 155842 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155719;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395331-8395453%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155720-155842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APAARVACAPRRGGGNPRAPVGWCPRSPPRGRRAPPRGVKPSDPSPESGPVCCLVWPA Same 547768 chr21:8395331-8395453+ 51182 51182 1747 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.813008130081 1.08413461538 -4.44103170732 0.2592 -0.102292682927 -4.33873902439 -0.000276558295627 0.0387963284238 41645 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 0.209251219512 0.3409 3.42346829268 -3.21421707317 -0.0041813458706 0.348652228388 37535 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.097278134313 chr1:2559823-2559978+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 52930 546414 chr21:8439546-8439668+ NoOverlap chr21 8439546 8439668 + 1.92989756131 41 0.198612545521 1.9070951299 0.022802431409 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439545;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439546-8439668%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439546-8439668&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0118717458335 -0.0063434992099 0.374440509806 155720 155842 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155719;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439546-8439668%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155720-155842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APAARVACAPRRGGGNPRAPVGWCPRSPPRGRRAPPRGVKPSDPSPESGPVCCLVWPA Same 547827 chr21:8439546-8439668+ 51183 51183 1747 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.813008130081 1.08413461538 -3.60415365854 0.2803 -1.33666829268 -2.26748536585 -0.0181178009692 0.173320038956 52837 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 0.977034146341 0.4088 3.29355609756 -2.31652195122 0.03210583509 0.386515086015 23119 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.167433484619 chr10:102655080-102655313+ not annotated LSU-rRNA_Hsa 52951 473170 chr1:90833963-90834049- NoOverlap chr1 90833963 90834049 - 2.48417583853 29 0.948393987945 -0.0466586228075 2.53083446134 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90833962;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90833963-90834049-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90833963-90834049&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00357784749738 -0.00639840448351 0.648530609673 91299520 91299606 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91299519;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90833963-90834049-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91299520-91299606&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLLFPQTWLATAHRWPRERRETIRQSLWTHRGDFLVIR Same 475049 chr1:90833963-90834049- 54563 54563 -1612 0 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.574712643678 0.420289855072 -1.20031724138 1.0 -2.83039310345 1.63007586207 0.0147743917434 0.496627367355 34738 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -5.3936 0.9146 -9.22004137931 3.82644137931 0.035526261056 0.590794701466 22153 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 52990 547197 chr21:8397360-8397521- NoOverlap chr21 8397360 8397521 - 1.20881298929 54 0.181993223864 1.1618036952 0.0470092940938 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8397359;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397360-8397521-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8397360-8397521&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0168770961356 -0.00649803135056 0.411613073599 157754 157915 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157753;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8397360-8397521-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157754-157915&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPHPRPRPPTPAPAGARPLRGGGGGAAGEGRAGGGVGRNGGRERSAGPPTRPDPPPG*ILRADCADPTR Same 548601 chr21:8397360-8397521- 52180 52180 810 11 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.796296296296 0.902278481013 -3.31010185185 0.2457 -4.40655555556 1.0964537037 -0.0337890923872 0.462933267955 62904 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -6.05133518519 0.3355 -8.70028518519 2.64895 -0.00678523983403 0.60298258093 39030 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.149785664462 chr12:56599964-56600096- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 52991 547294 chr21:8441580-8441741- NoOverlap chr21 8441580 8441741 - 1.20881298929 54 0.181993223864 1.1618036952 0.0470092940938 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441579;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441580-8441741-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441580-8441741&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0168770961356 -0.00649803135056 0.411613073599 157754 157915 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157753;162;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441580-8441741-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157754-157915&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPHPRPRPPTPAPAGARPLRGGGGGAAGEGRAGGGVGRNGGRERSAGPPTRPDPPPG*ILRADCADPTR Same 548697 chr21:8441580-8441741- 52181 52181 810 11 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.796296296296 0.902278481013 -1.6832037037 0.2744 -1.67113703704 -0.0120666666667 -0.0278439613191 0.393420011178 59190 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -5.14017962963 0.3211 -3.83452592593 -1.3056537037 -0.0300507427242 0.435686103917 57148 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.130189388342 chr19:19226486-19227073+ not annotated SSU-rRNA_Hsa 52997 529172 chr19:51689296-51689391+ NoOverlap chr19 51689296 51689391 + 2.80548438523 32 0.244517719539 1.67792187928 1.12756250595 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51689295;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51689296-51689391%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51689296-51689391&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000812257391785 -0.00650756204866 0.477292997146 52192549 52192644 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52192548;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51689296-51689391%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52192549-52192644&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRGGGPPGEGAGPTAAQPAGSREGEPRTAEPGR Same 530631 chr19:51689296-51689391+ 50717 50717 2280 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.864583333333 0.664150943396 -1.789125 0.4658 -2.7628 0.973675 -0.0433823718722 0.444670098647 68418 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 -8.796734375 0.3411 -8.8588125 0.062078125 -0.0537637722533 0.429507430405 72529 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.119064171609 chr11:65607270-65607513- ENST00000602324.1 AntiNCintron protein-coding gene protein-coding gene ENSG00000182310 53068 479583 chr10:129837705-129837734+ NoOverlap chr10 129837705 129837734 + 6.69271986485 10 0.975906004425 2.52321021259 4.16950965226 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129837704;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129837705-129837734%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129837705-129837734&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0429265399761 -0.00667741969037 0.634075076721 131635969 131635998 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131635968;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129837705-129837734%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131635969-131635998&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KVQSIKWNCS Same 481488 chr10:129837705-129837734+ 57000 57000 -3932 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.266666666667 0.0 2.10625 0.9827 -0.29316 2.39941 -0.00407259835173 0.426251808614 43625 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -12.12271 0.982 -12.83045 0.70774 -0.0411369082705 0.319602787984 66063 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000617939.1,ENST00000355311.9 NC,AntiUTR3 not annotated potentially spurious 53115 591285 chr9:4850295-4850354- NoOverlap chr9 4850295 4850354 - 3.62436487675 20 0.798306248569 1.45702495575 2.167339921 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;4850294;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A4850295-4850354-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A4850295-4850354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0610787598517 -0.00678949189177 0.522106789023 4850295 4850354 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;4850294;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A4850295-4850354-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A4850295-4850354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NLFQAPGFHAPNAMAQGCIAPPQSSTLSQCDGTTILQLSQYCTFQIYSIGTMITEKGQFSLIST Same 592240 chr9:4850295-4850354- 53650 53650 -535 0 24255 4850295 4850354 Best 53115 53115 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:4850295-4850354&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.416666666667 0.779220779221 -1.83271 1.0 -2.675315 0.842605 -0.0354687414602 0.37561456699 63989 Best 63989 63989 -6.574425 0.9317 -7.612685 1.03826 -0.0285639400801 0.420824423152 55815 Best 55815 55815 0.0 0.0 ENST00000443970.1,ENST00000362195.2,ENST00000381728.5 NC,AntiNC,AntiCDSintron not annotated deeply conserved miRNA 53195 546248 chr21:8214594-8214653+ NoOverlap chr21 8214594 8214653 + 3.57707505971 20 0.389522392615 1.70494499356 1.87213006616 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8214593;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8214594-8214653%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8214594-8214653&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00958479857749 -0.00698705859981 0.483135479564 114054 114113 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;114053;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8214594-8214653%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A114054-114113&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RDRLRDGWEGPAGKVARGAPSVRPSVLLLPR Same 547662 chr21:8214594-8214653+ 52530 52530 665 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.833333333333 0.916808149406 0.259265 0.2367 -1.1548 1.414065 0.00983726820912 0.429507759983 36868 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -1.94189 0.3364 -3.74774 1.80585 -0.00761231888369 0.464235086503 39518 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 53196 724187 chr8:144462656-144462694+ Extension chr8 144462656 144462694 + 5.45735404125 13 0.479503025395 2.19243075928 3.26492328197 chr8:144462464-144462694+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144462655;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144462656-144462694%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144462656-144462694&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00126614176193 -0.00698835281705 0.574982463188 145688039 145688077 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145688038;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144462656-144462694%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145688039-145688077&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAAAACPAAAPGPAPTPTPTPAGTEPAGPAAGPPPPASSAPDIAAGRPGGRMPARSPD Same 724785 chr8:144462656-144462694+ 55008 55008 -1812 0 455 144462230 144473371 652 652;52414;53196;56283;57650;72805 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144462230-144473371&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.923076923077 1.0866873065 2.72137692308 0.3703 -2.62841538462 5.34979230769 -0.000394507829496 0.708407250103 41693 886 886;41693;42652;43967;45511;56412 -4.70617692308 0.3791 -8.11467692308 3.4085 -0.0236379702938 0.475399862874 51248 1535 1535;18941;28339;51248;53436;61641 0.0 0.124932721517 chr19:1481759-1482207- ENST00000530374.5,ENST00000438911.6 AntiUTR5,AntiCDSintron coding exon(s) KIFC2 frame corrected in final exon 53219 547313 chr21:8445742-8445948- NoOverlap chr21 8445742 8445948 - 1.72421157997 69 0.207974939821 1.01920731629 0.705004263685 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8445741;207;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445742-8445948-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8445742-8445948&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0142747179066 -0.00702834664657 0.519364908309 117947 118154 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;117946;208;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445742-8445948-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A117947-118154&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAWRGGRPAGGDRRGTGYPRPTEAPRRCRIVPPGRDSDLEAFSHNPTDGSFAPLAPQPSTYTKCLNLRFLSY Same 548716 chr21:8445742-8445948- 51844 51844 1375 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.647342995169 0.876141679661 0.616546376812 0.0805 0.357330434783 0.259215942029 0.0088975925566 0.457846700127 37267 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 0.00844782608696 0.0809 -0.64815942029 0.656607246377 -0.032849291835 0.539548409417 59666 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 53307 546353 chr21:8395264-8395395+ NoOverlap chr21 8395264 8395395 + 1.91565912657 44 0.200355119055 2.33554088257 -0.419881755994 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395263;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395264-8395395%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395264-8395395&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0115470799242 -0.00719642759002 0.326892045064 155653 155784 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155652;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395264-8395395%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155653-155784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPAGAAPPPPPRRPSGGGFTRRPSRACRACGVRPAPWGREPPGACGVVSALAPAWAAR Same 547767 chr21:8395264-8395395+ 52945 52945 362 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.863636363636 1.14640198511 -2.91448863636 0.2286 -2.10622045455 -0.808268181818 -0.022222920867 0.298424689929 55634 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -3.26384545455 0.309 -0.409852272727 -2.85399318182 -0.0340959515281 0.362664186041 60727 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.10380103786 chr1:2559823-2559978+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 53308 546413 chr21:8439479-8439610+ NoOverlap chr21 8439479 8439610 + 1.91565912657 44 0.200355119055 2.33554088257 -0.419881755994 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439478;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439479-8439610%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439479-8439610&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0115470799242 -0.00719642759002 0.326892045064 155653 155784 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155652;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439479-8439610%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155653-155784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPAGAAPPPPPRRPSGGGFTRRPSRACRACGVRPAPWGREPPGACGVVSALAPAWAAR Same 547826 chr21:8439479-8439610+ 52946 52946 362 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.863636363636 1.14640198511 -4.24019318182 0.2516 -3.158325 -1.08186818182 -0.0227597820476 0.258266872242 56020 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -1.72686363636 0.362 -0.837729545455 -0.889134090909 0.00475310319308 0.448296708062 33064 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.169580749681 chr10:102655080-102655313+ not annotated LSU-rRNA_Hsa 53343 537370 chr2:240568230-240568334+ NoOverlap chr2 240568230 240568334 + 1.62247424977 35 0.207782973111 -0.0189113804272 1.6413856302 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;240568229;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240568230-240568334%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A240568230-240568334&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0188288660167 -0.00729108009223 0.567602355317 241507647 241507751 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;241507646;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240568230-240568334%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A241507647-241507751&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLGSPGRRPGRKRGAGGAAHPLRAPRLPTQRPGPAPRSIPR Same 538741 chr2:240568230-240568334+ 47716 47716 5627 0 187 240560378 240572566 225 225;4611;43454;53343;54932;58666;60196 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:240560378-240572566&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.809523809524 0.936454849498 -8.29194857143 0.4537 -11.4145028571 3.12255428571 -0.0238109581623 0.553632570577 56709 635 635;2542;29313;56709;59851;60661;63450 -8.59 0.3111 -10.81648 2.22648 -0.0479078056156 0.531696824217 70450 1672 1672;2162;18782;46446;66739;70450;73682 0.0 0.40658766236 chr17:8797360-8799120- ENST00000451363.5,ENST00000418708.3,ENST00000418505.3 UTR5intron,AntiUTR5intron,AntiNCintron coding exon(s) RNPEPL1 extended 5' 53373 547225 chr21:8402083-8402268- NoOverlap chr21 8402083 8402268 - 1.49725483069 62 0.187926421981 0.24372099364 1.25353383706 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8402082;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8402083-8402268-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8402083-8402268&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0146830657952 -0.00738098408448 0.590525622954 118520 118705 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118519;186;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8402083-8402268-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118520-118705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPAGHGPGSARPPPRLPNHAPRTPSRPGADEPPRR*TGRRREPKKRGAPTGVARPPPHTPTTTPAVGGR Same 548627 chr21:8402083-8402268- 47083 47083 6290 30 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.817204301075 1.0525198939 0.676135483871 0.1034 0.174382258065 0.501753225806 0.0137893725649 0.486113990096 35181 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 3.73453548387 0.1911 2.81389032258 0.92064516129 0.0550903838189 0.557463449589 17715 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.178994689066 chr12:56609736-56609946- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 53503 547320 chr21:8446053-8446217- NoOverlap chr21 8446053 8446217 - 1.71789275184 55 0.216116301491 0.210225929817 1.50766682203 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8446052;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446053-8446217-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8446053-8446217&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00917585312283 -0.00766218063569 0.61879622712 118259 118423 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118258;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446053-8446217-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118259-118423&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARADKPLCRGLTFNRSQRGSCSATYETPTQKQVVYEWFSARFPTNVRCVTGEGAAAFPAAPR Same 548723 chr21:8446053-8446217- 47789 47789 5714 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.636363636364 1.20262390671 0.346003636364 0.0833 0.321374545455 0.0246290909091 0.0108035051141 0.433156274904 36438 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -2.36353636364 0.1236 -2.44306909091 0.0795327272727 -0.0480014419684 0.503791870158 70499 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.167094353629 chr8:144522475-144523409- not annotated SSU-rRNA_Hsa 53570 479619 chr10:129850278-129850307+ NoOverlap chr10 129850278 129850307 + 6.71856993139 10 0.925716029603 3.05683012009 3.6617398113 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129850277;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129850278-129850307%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129850278-129850307&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0595724846824 -0.00777916652943 0.569144266981 131648542 131648571 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131648541;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129850278-129850307%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131648542-131648571&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WAAIIDFMQMPLTGDRRFNASFQK Same 481524 chr10:129850278-129850307+ 51919 51919 1651 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.4 0.857142857143 6.58333 0.988 -2.25848 8.84181 0.276577554884 0.905439569439 6169 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -1.09396 0.8159 -13.64286 12.5489 0.0890861295835 0.817119460065 12659 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 53629 546390 chr21:8401598-8401717+ NoOverlap chr21 8401598 8401717 + 2.49786998406 40 0.207642099641 2.49062998435 0.00723999971524 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8401597;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401598-8401717%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8401598-8401717&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00861858192591 -0.00788577984137 0.367937857272 118035 118154 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118034;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401598-8401717%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118035-118154&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNASKSESRPGGTIRQRRGASVGLG*PVPRLSPPAGRPPPPR Same 547803 chr21:8401598-8401717+ 52463 52463 1166 14 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.741666666667 1.00628930818 0.9426625 0.0851 0.13664 0.8060225 0.0256355452852 0.486192210994 30392 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -0.8017925 0.0859 -1.9147225 1.11293 -0.0479603929004 0.527197767025 70474 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.320348827034 chr19:44649809-44650105+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 53877 585508 chr8:141518571-141518615+ NoOverlap chr8 141518571 141518615 + 4.64613990784 15 0.455866330968 1.42527998121 3.22085992663 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;141518570;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A141518571-141518615%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A141518571-141518615&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0024134802128 -0.00845671660992 0.601556891586 142528671 142528715 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;142528670;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A141518571-141518615%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A142528671-142528715&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HGPGSDAQAAPGAAGPELRPRAGPGPGLVLLLPGPAAAFPEPEASASSDGTPR Same 586446 chr8:141518571-141518615+ 54207 54207 -330 0 87 141514697 141518615 102 102;12541;53877 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:141514697-141518615&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.888888888889 0.805626598465 7.45312666667 0.6478 1.7175 5.73562666667 0.158941567027 0.747833095825 10965 573 573;2921;10965 8.34006666667 0.353 1.27324666667 7.06682 0.169944058081 0.639053107238 7152 1525 1525;4375;7152 0.0 0.0990538692922 chr22:23767374-23767593- ENST00000427937.1 NC protein-coding gene protein-coding gene ENSG00000226490 54035 501027 chr14:28767480-28767605+ NoOverlap chr14 28767480 28767605 + 2.24569763782 42 0.217063582891 1.49439046284 0.751307174985 ENST00000313071.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28767479;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28767480-28767605%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28767480-28767605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00741679123525 -0.00880547795631 0.477452788544 29236686 29236811 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29236685;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28767480-28767605%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29236686-29236811&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPRPPQQPPPPAPPPPPPPSPPPAAARPATAAAAAAAAAAAAAAPGTAAPPDAGRPGRRRRQGPPAAAAPAAATATTGR Same 502919 chr14:28767480-28767605+ 51516 51516 2519 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.849206349206 0.950226244344 -0.57890952381 0.3889 -2.40625 1.82734047619 -0.0156861884332 0.57169897946 51070 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -3.73757619048 0.4091 -14.5821357143 10.8445595238 0.269355880531 0.922934777758 4954 Best 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.257640382254 chr1:63323059-63324495+ ENST00000313071.6 CDS not annotated putative regulatory region 54061 530313 chr19:15432436-15432534- NoOverlap chr19 15432436 15432534 - 2.84396967021 33 0.259018659934 1.88235148652 0.961618183689 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15432435;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432436-15432534-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15432436-15432534&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000155814625012 -0.0088748831762 0.460587688583 15543247 15543345 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15543246;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432436-15432534-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15543247-15543345&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAAAAPTPAAAATTTATATAAAGRAQGRAGAGARARVRSRAR Same 531776 chr19:15432436-15432534- 52232 52232 1829 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.878787878788 1.04384017758 -0.213687878788 0.3566 -1.26625454545 1.05256666667 -0.0191835287695 0.470794835942 53611 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -0.6706 0.2782 -1.87085151515 1.20025151515 0.00489753157424 0.507860557889 32995 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.144350621815 chr19:58350370-58350651- ENST00000599686.3,ENST00000263381.11,ENST00000599910.6 UTR5,CDSintron,UTR5intron coding exon(s) WIZ 2 cassette exons 54064 546249 chr21:8214902-8214937+ NoOverlap chr21 8214902 8214937 + 5.69789164265 12 0.402891584649 4.05524154504 1.64265009761 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8214901;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8214902-8214937%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8214902-8214937&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0115711287612 -0.00887745572804 0.348375116581 114368 114403 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;114367;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8214902-8214937%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A114368-114403&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QQHSPNPGAEGARPVAALSPLPAPTPAGNPPRGGSPPRGRAGVSSWGGR Same 547663 chr21:8214902-8214937+ 57840 57840 -3776 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.888888888889 1.0 3.64131666667 0.1722 1.88443333333 1.75688333333 0.0261193617891 0.386113690649 30192 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 3.02403333333 0.2812 2.85304166667 0.170991666667 -0.0125232440247 0.340007968472 42541 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 54149 512314 chr16:72787740-72788033+ NoOverlap chr16 72787740 72788033 + 0.819932622265 98 0.64883104993 -0.464257162444 1.28418978471 ENST00000268489.9,ENST00000397992.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72787739;294;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72787740-72788033%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72787740-72788033&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0301775156282 -0.00909484765166 0.571192852748 72821639 72821932 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72821638;294;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72787740-72788033%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72821639-72821932&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAAAAAAATAAAAATATAAAAGGDVKHHLLQVHHRLAEEAEGLQVAPRCLLVAEARLALAADQLVLHLWNNEGVVEGVRTFAFCFWLFREFRQEGGHLTGGVFLFFWFGGFFGR Same 513958 chr16:72787740-72788033+ 21213 21213 32936 0 1044 72786749 72802320 1595 1595;21079;37333;39725;51719;54149;65275;67341;70055 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72786749-72802320&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.602040816327 0.603851091142 -3.16866632653 0.939 -4.0999 0.931233673469 0.0638068022736 0.414136633205 20622 2453 2453;8633;10458;20402;20517;20622;22628;49851;70811 -24.6946938776 0.9176 -28.4660010204 3.77130714286 -0.0167309154118 0.5999780172 45598 1956 1956;9416;10906;18989;19008;25678;39101;45598;59430 0.0 0.0 ENST00000563328.4,ENST00000268489.9,ENST00000584072.1 NC,AntiCDS,AntiNC not annotated putative regulatory region 54211 502023 chr14:73612572-73612604+ NoOverlap chr14 73612572 73612604 + 5.82094557719 11 0.713869757312 0.577790943059 5.24315463413 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;73612571;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73612572-73612604%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A73612572-73612604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00108689645132 -0.00924754732395 0.785968718797 74079276 74079308 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;74079275;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73612572-73612604%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A74079276-74079308&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAKPPGPPTDSAELGRPCSTQIGMAATLILEPAGR Same 503925 chr14:73612572-73612604+ 55613 55613 -1402 0 238 73612572 73617174 305 305;369;18695;18948;54211;63382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:73612572-73617174&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.727272727273 0.923076923077 0.896045454545 0.9325 3.25576363636 -2.35971818182 -0.0302891119723 0.0897707370935 60715 503 503;685;4788;45597;60715;60824 -4.74618181818 0.7336 -7.35784545455 2.61166363636 -0.0365649657878 0.427664784775 62655 1326 1326;1373;1540;31312;62655;73789 0.318997801183 chr14:73591960-73592416+ 0.421224905879 chr14:73569301-73569883+ ENST00000554229.1 UTR5intron pseudo-exon ACOT6 untranscribed pseudo-exon 54418 476446 chr1:244048640-244048867- NoOverlap chr1 244048640 244048867 - 1.75604080571 76 0.213110913012 1.81157765479 -0.0555368490811 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244048639;228;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048640-244048867-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244048640-244048867&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0143840726616 -0.00970448820721 0.413516636292 244211942 244212169 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244211941;228;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244048640-244048867-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244211942-244212169&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TWWASSGSCPPPSRPPHPPIPAPSPAPPRPSLPPTPAGSRRSAAERRGPHSQRLPMAAAQRRPQPARHSEGASEGASAEPPGRVGGRGR Same 478340 chr1:244048640-244048867- 57778 57778 -3360 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.80701754386 0.736011477762 -0.0859355263158 0.2348 -0.0359184210526 -0.0500171052632 -0.00675825521107 0.406709230276 45127 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -7.95420526316 0.3889 -5.02216710526 -2.93203815789 -0.0136708395706 0.370027304366 43336 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0902566400403 chr11:62762867-62763026+ not annotated putative regulatory region 54433 546260 chr21:8215899-8215979+ NoOverlap chr21 8215899 8215979 + 2.37825922447 27 0.382232281874 2.38027781579 -0.00201859132007 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8215898;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215899-8215979%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8215899-8215979&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0110585741291 -0.0097368497343 0.301373140143 115364 115444 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;115363;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215899-8215979%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A115364-115444&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLTCRIN*P*KWMALERRAHTRPSPAVESGR None NA NA 8 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.641975308642 1.07840236686 -0.70402962963 0.2596 -0.095462962963 -0.608566666667 -0.0038798063408 0.293655699186 43530 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -2.98537037037 0.193 -3.2331 0.24772962963 -0.0431439313005 0.436344196094 67502 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.2577719785 chr3:9840698-9840805- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 54444 560800 chr4:575930-576238- NoOverlap chr4 575930 576238 - 1.79643493963 103 0.206776487181 2.09784756221 -0.30141262258 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;575929;309;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575930-576238-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A575930-576238&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00836780424641 -0.00976104094872 0.376411765515 569719 570027 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;569718;309;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575930-576238-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A569719-570027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RREAEDAGSGGGGAGPGGRGRMRRRPAVRPRGAGRRRRRRGRRRAAAGARGAGRLGRGG*SGASAGPAPRSPPASCSPARSAPPPSASSASRWARSCAGSRSAWGPPPAPSTPGCCWPPASHCSAPPCSAADPGTRPSR Same 561788 chr4:575930-576238- 63310 63310 -8866 43 477 574887 576356 703 703;6245;31841;46311;49193;54444;54931;56343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:574887-576356&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.825242718447 1.14840445982 1.18103883495 0.2365 1.68669805825 -0.505659223301 0.0249216208887 0.379788939211 30652 1278 1278;5393;22990;30652;31516;37018;38104;57044 -13.9518873786 0.5017 -11.9267747573 -2.02511262136 -0.0506030156271 0.413767333842 71601 1826 1826;3252;19289;35804;46734;55036;61815;71601 0.0 0.0576187426307 chr19:7869033-7869544- protein-coding gene protein-coding gene ENSG00000273238 54500 475580 chr1:205457046-205457075- NoOverlap chr1 205457046 205457075 - 6.64990001917 10 0.410034332799 5.0694999218 1.58040009737 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;205457045;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205457046-205457075-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A205457046-205457075&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0191689816575 -0.0098785876309 0.302955397061 205426174 205426203 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;205426173;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A205457046-205457075-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A205426174-205426203&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLANTPWPRGLRRRRR None NA NA 0 426 205429956 205457273 602 602;5870;20670;25343;28258;42315;54500 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:205429956-205457273&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.933333333333 1.22448979592 -2.87761 0.6009 -3.52424 0.64663 -0.00113215567794 0.303073891705 42062 1075 1075;10557;16883;23930;42062;54053;60191 -8.08187 0.2865 -10.41873 2.33686 -0.0118091148279 0.399051817107 42041 283 283;9691;10748;23486;28634;42041;49407 0.0 0.0 ENST00000629113.1,ENST00000442318.1 NC,AntiNC under investigation; now made coding Finds a 33aa single exon CDS within a 5' exon of LEMD1 in GENCODE [chr1:205441026-205440925], although this exon is part of lncRNA BLACAT1 in RefSeq. Transcriptomics data make it clear that the locus should indeed be considered an independent gene from LEMD1, with an indication of potential brain / neuronal specificity (e.g. SRR486241). The CDS was initially considered hard to appraise because of its small size, although the reading frame is conserved across vertebrates with only 3mer indels in the genomic alignments. Following the analytical work presented here, it was decided to convert this gene (i.e. BLACAT1) to protein-coding, and ENSG00000281406 appeared in GENCODEv31. 54508 529171 chr19:51689268-51689348+ NoOverlap chr19 51689268 51689348 + 3.27119634659 27 0.271076523995 3.11622592476 0.154970421835 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51689267;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51689268-51689348%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51689268-51689348&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00148502509942 -0.00989859827844 0.314663478263 52192521 52192601 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52192520;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51689268-51689348%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52192521-52192601&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLLLPGAGWNFFPWTWASSGAGGKPGRTGLGGGEGPGRGAPWGGGWSDGRAAGGVQGGGAPDR None NA NA 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.864197530864 0.599444958372 -0.0762851851852 0.4811 -1.29492592593 1.21864074074 -0.0357992153131 0.456352652962 64185 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 -4.23203333333 0.3249 -3.48344814815 -0.748585185185 -0.0385098579163 0.392263114423 64113 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.13869287009 chr11:65607270-65607513- ENST00000602324.1 AntiNCintron protein-coding gene protein-coding gene ENSG00000182310 54523 511035 chr16:28259276-28259305+ NoOverlap chr16 28259276 28259305 + 6.46127002239 10 0.765250629435 1.59026008844 4.87100993395 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;28259275;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A28259276-28259305%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A28259276-28259305&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0202924529523 -0.00991869051372 0.722740128614 28270597 28270626 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;28270596;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A28259276-28259305%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A28270597-28270626&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQVAGGQVQSPEADGLLTLERPGSGTPAQAGDDAAEATPGHPCPVLELPPAWPMGCGVDDVPAFCFVCFHR Same 512675 chr16:28259276-28259305+ 52938 52938 1585 0 360 28259225 28259497 499 499;15091;54523 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:28259225-28259497&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.7 0.545454545455 12.00549 0.9691 1.34854 10.65695 0.510285130822 0.956387232521 3068 135 135;2877;3068 11.33127 0.4341 -2.64715 13.97842 0.282052997612 0.839930920307 4819 2069 2069;4819;5298 0.0 0.0 under investigation SBK1 potential non-ATG start 54581 539226 chr2:73071755-73071799- NoOverlap chr2 73071755 73071799 - 4.82663989862 15 0.829007400626 3.13324013551 1.69339976311 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;73071754;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73071755-73071799-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A73071755-73071799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0894875724169 -0.0100378315688 0.398594722785 73298884 73298928 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;73298883;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A73071755-73071799-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A73298884-73298928&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLRLIRANRERQLWRGPR Same 540604 chr2:73071755-73071799- 52948 52948 1633 0 311 73071669 73081530 418 418;1129;1310;1891;4235;7622;14465;18194;23824;54581 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:73071669-73081530&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.767045454545 -1.06444 0.9897 -4.30998 3.24554 -0.0108759874532 0.548441697363 47668 166 166;734;1495;1711;1973;3802;9955;14922;47668;73713 -3.63755333333 0.4256 -7.09998666667 3.46243333333 -0.011149054829 0.495383102391 41635 2300 2300;2572;2797;3173;3182;4993;30735;31537;41635;57875 0.0 0.0 ENST00000272433.6,ENST00000485057.5 UTR5,NCintron coding exon(s) RAB11FIP5 2kb cassette exon 54615 547236 chr21:8435280-8435408- NoOverlap chr21 8435280 8435408 - 1.7230837365 43 0.212147246013 0.164534852255 1.55854888425 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8435279;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8435280-8435408-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8435280-8435408&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0102038345972 -0.0101273951499 0.592344504017 151454 151582 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;151453;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8435280-8435408-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A151454-151582&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGDREGKGTREPAEAAARGETSGTAGPPGKHGRGIPPPQTRGRSRGAPPGTPDGPRPPPR Same 548639 chr21:8435280-8435408- 48962 48962 5653 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.759689922481 0.914893617021 -1.86948139535 0.2826 -4.13225581395 2.2627744186 -0.0151655497206 0.594303753096 50698 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 4.18063255814 0.2939 0.390962790698 3.78966976744 0.182432024255 0.656598592922 6725 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.234576706229 chr17:81120201-81122823- ENST00000614525.1 AntiNC not annotated SSU-rRNA_Hsa 54626 548924 chr22:41976809-41976889+ NoOverlap chr22 41976809 41976889 + 1.88853332235 27 0.376635611731 1.43465553997 0.45387778238 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;41976808;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41976809-41976889%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A41976809-41976889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0232985876559 -0.010151556544 0.362673075017 42372813 42372893 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;42372812;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A41976809-41976889%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A42372813-42372893&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAGGSGGGWRRRQRCARTGAARRRASRGEVPGRARR Same 550296 chr22:41976809-41976889+ 53472 53472 1154 0 449 41971511 41976889 643 643;1518;1625;1678;2356;48456;54626 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:41971511-41976889&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.864197530864 1.368 1.08766296296 0.3936 -0.549118518519 1.63678148148 -0.0138570350023 0.500523902494 49782 797 797;1243;1705;1853;3195;37930;49782 -3.0492962963 0.2888 -2.54517037037 -0.504125925926 -0.0347292349526 0.404985819526 61260 2758 2758;2926;3000;4195;4636;26254;61260 0.0 0.0 ENST00000396426.7,ENST00000449288.5 UTR5,UTR5intron coding exon(s) SEPT3 alternative first exon 54651 482199 chr10:113123127-113123228- NoOverlap chr10 113123127 113123228 - 1.84412940109 34 0.856955196819 -1.07548824128 2.91961764237 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113123126;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113123127-113123228-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113123127-113123228&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.090970627965 -0.0102118281925 0.730402753843 114882886 114882987 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114882885;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113123127-113123228-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114882886-114882987&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QLSLPLSRLPQHDRISTSIKLTLRL*NLLICY*DTSELDEMSAVGAVMTSK Same 484123 chr10:113123127-113123228- 53867 53867 784 15 719 113118964 113126911 1110 1110;6516;16816;37245;38490;54651;58469;62875;67669;70173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118964-113126911&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.43137254902 0.888888888889 -3.35474411765 0.9853 -3.53077058824 0.176026470588 -0.0813897892251 0.364157233794 73429 4406 4406;18572;33940;40718;63931;65767;72176;72358;72407;73429 -7.68119411765 0.9075 -7.74280588235 0.0616117647059 -0.0240606673308 0.441991288311 51629 6655 6655;10141;25415;26332;35901;38764;51629;51984;53928;72240 0.0 0.0 ENST00000346198.5 AntiCDSintron not annotated putative regulatory region 54663 574593 chr6:34237580-34237642- NoOverlap chr6 34237580 34237642 - 1.88587617165 21 0.358917626713 0.235252319347 1.6506238523 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34237579;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237580-34237642-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34237580-34237642&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0590473168823 -0.0102270711503 0.478186694476 34205357 34205419 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34205356;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237580-34237642-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34205357-34205419&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CAGLLRAPPGAQLALAAAARPLPHRAPFPGPRPPQGAR Same 575625 chr6:34237580-34237642- 50600 50600 4063 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.825396825397 1.20574162679 -2.42304285714 0.2878 -3.18876190476 0.765719047619 0.000896916507 0.373104367836 41060 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -3.26692857143 0.2079 -5.9557952381 2.68886666667 -0.0257645256225 0.505216952724 53241 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.240466759168 chr18:32092777-32092886+ ENST00000311487.9,ENST00000478214.1 AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000186577 54686 546364 chr21:8396934-8397251+ NoOverlap chr21 8396934 8397251 + 1.64800944742 106 0.183794918746 1.28238396768 0.365625479733 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8396933;318;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396934-8397251%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8396934-8397251&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00595123435571 -0.0102691219568 0.464145076956 157328 157645 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157327;318;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396934-8397251%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157328-157645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGAIPSVRPPSGPSPSETRPQIRRGDPLNLSILVSGGKETNQDSLSNGE*TGKSPAPNPRPAAGRGTCGVRKTRSPAPLVGGPSPSDRGPARGRCEAGSGPRRAGPGSSRSRVAWECSPKRVVNSI Same 547777 chr21:8396934-8397251+ 57257 57257 -2571 30 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.660377358491 0.983892983893 -1.9135 0.2617 -2.11199056604 0.198490566038 -0.0383311163823 0.390998127002 65616 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -3.34314433962 0.4166 -5.31329339623 1.9701490566 0.114393320879 0.58985948204 10269 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0475830538297 chr2:73293182-73293626- ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 54705 547158 chr21:8392450-8392494- NoOverlap chr21 8392450 8392494 - 4.32487336397 15 0.3720322474 0.471640030543 3.85323333343 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8392449;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392450-8392494-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8392450-8392494&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000576144926458 -0.0103101758916 0.685173119318 108866 108910 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;108865;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392450-8392494-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A108866-108910&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGAGAAAGTGGAGAGRGEPDAPTTRPPR Same 548566 chr21:8392450-8392494- 52751 52751 1954 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.844444444444 0.882352941176 3.23922 0.2007 2.77036666667 0.468853333333 0.0211693276902 0.306616750521 32139 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 11.1814 0.2532 3.4078 7.7736 0.165118293463 0.658873964226 7332 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.16313477179 chr16:2214138-2214777- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 54709 547210 chr21:8398262-8398618- NoOverlap chr21 8398262 8398618 - 1.64698068985 119 0.18328406208 1.22557562101 0.421405068841 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398261;357;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398262-8398618-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398262-8398618&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00340667446207 -0.010319098853 0.49085226297 158665 159021 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158664;357;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398262-8398618-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158665-159021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VCESASYPEGNFGGNQLLDGSISLSPLYPGRTTDLHVRTATDLHQSFLWLRPAQA*FTIFRVLTRALVLHLPGAAGETGRWCALGGLERPRDPTSAGERAGLHLHCATAAFVRAPDSRTC Same 548612 chr21:8398262-8398618- 59789 59789 -5080 56 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.66106442577 1.08463541667 -0.637559663866 0.2688 -1.22570504202 0.588145378151 0.00583139708563 0.483613472187 38670 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -3.83101428571 0.2826 -4.60896890756 0.777954621849 0.0111567588669 0.548366628138 30271 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.147824680142 chr12:56600201-56600490- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 54710 547306 chr21:8442491-8442847- NoOverlap chr21 8442491 8442847 - 1.64698068985 119 0.18328406208 1.22557562101 0.421405068841 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442490;357;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442491-8442847-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442491-8442847&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00340667446207 -0.010319098853 0.49085226297 158665 159021 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158664;357;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442491-8442847-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158665-159021&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VCESASYPEGNFGGNQLLDGSISLSPLYPGRTTDLHVRTATDLHQSFLWLRPAQA*FTIFRVLTRALVLHLPGAAGETGRWCALGGLERPRDPTSAGERAGLHLHCATAAFVRAPDSRTC Same 548709 chr21:8442491-8442847- 59790 59790 -5080 56 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.66106442577 1.08463541667 -0.679104201681 0.273 -1.30922184874 0.630117647059 0.00593843083202 0.486534663865 38618 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -3.77155294118 0.2995 -4.88854117647 1.11698823529 0.0255185705062 0.561878607453 25158 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 54791 547237 chr21:8435537-8435572- NoOverlap chr21 8435537 8435572 - 3.68077498311 12 0.188372625315 -2.01609158764 5.69686657075 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8435536;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8435537-8435572-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8435537-8435572&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0157699993451 -0.0105236807727 0.8636628849 151711 151746 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;151710;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8435537-8435572-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A151711-151746&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPGRSVAGGGAPR Same 548640 chr21:8435537-8435572- 52995 52995 1796 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 1.12 3.50955833333 0.2692 -1.68384166667 5.1934 0.0134872346064 0.683690877245 35323 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 14.5168916667 0.2752 2.53280833333 11.9840833333 0.220163932037 0.777260901167 5746 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.393599695089 chr17:81120201-81122823- not annotated SSU-rRNA_Hsa 54810 577670 chr7:27143969-27144031+ NoOverlap chr7 27143969 27144031 + 3.2914238856 21 0.785347705879 0.646742917243 2.64468096835 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27143968;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143969-27144031%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27143969-27144031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0227477647241 -0.0105498846536 0.597101294209 27183588 27183650 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27183587;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27143969-27144031%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27183588-27183650&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRGRIEVTAHYGKIIAFPSQFH Same 578709 chr7:27143969-27144031+ 55946 55946 -1136 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.492063492063 0.7875 -0.405828571429 0.9956 -3.76917619048 3.36334761905 0.0517913799578 0.60792108711 22756 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -7.22151428571 0.8115 -10.9224333333 3.70091904762 -0.0131696674975 0.53319017633 42974 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000467897.2 NCintron,AntiNCintron not annotated putative regulatory region 54817 522732 chr17:62966575-62966607- NoOverlap chr17 62966575 62966607 - 6.18057288907 11 0.494203652455 2.05803647908 4.12253640998 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;62966574;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A62966575-62966607-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A62966575-62966607&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00729837511416 -0.0105595417278 0.649652534957 61043936 61043968 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;61043935;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A62966575-62966607-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A61043936-61043968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPEHLAVLQRPAASLHPGTARRGLAAGER Same 524161 chr17:62966575-62966607- 56821 56821 -2004 0 24557 62966188 62966607 Best 54817 54817;63394 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:62966188-62966607&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.878787878788 1.1 1.52401818182 0.6366 -0.696854545455 2.22087272727 -0.0148156045739 0.422651036997 50486 46752 46752;50486 -1.50200909091 0.3268 -0.743318181818 -0.758690909091 -0.0263599086653 0.299985174416 53795 43143 43143;53795 0.0 0.184239896009 chr11:14644076-14645053+ ENST00000582505.1 NC not annotated putative regulatory region 54873 546277 chr21:8218478-8218678+ NoOverlap chr21 8218478 8218678 + 1.59598506865 67 0.206872481265 0.721854546136 0.874130522512 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8218477;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8218478-8218678%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8218478-8218678&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0108603143223 -0.0106646130196 0.54117020245 117953 118154 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;117952;202;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8218478-8218678%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A117953-118154&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEPQVQTFGVCAWLRSQWGEATICGIMTERL*VRIPPRRNDTAAPRSLGWPRIAGPPPVPAGGPPPPPR Same 547690 chr21:8218478-8218678+ 51276 51276 3597 32 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.651741293532 0.843356643357 0.183808955224 0.0805 -0.0329253731343 0.216734328358 0.00309326796852 0.446750063036 39945 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 0.0120358208955 0.0775 -0.767347761194 0.77938358209 -0.0346651807127 0.544756122712 61202 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 54874 546449 chr21:8445748-8445948+ NoOverlap chr21 8445748 8445948 + 1.59598506865 67 0.206872481265 0.721854546136 0.874130522512 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8445747;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445748-8445948%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8445748-8445948&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0108603143223 -0.0106646130196 0.54117020245 117953 118154 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;117952;202;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8445748-8445948%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A117953-118154&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEPQVQTFGVCAWLRSQWGEATICGIMTERL*VRIPPRRNDTAAPRSLGWPRIAGPPPVPAGGPPPPPR Same 547862 chr21:8445748-8445948+ 51277 51277 3597 32 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.651741293532 0.843356643357 0.183808955224 0.0805 -0.0329253731343 0.216734328358 0.00309326796852 0.446750063036 39946 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -0.587968656716 0.0816 -0.246413432836 -0.341555223881 -0.0341101837015 0.495095048651 60745 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.365126284569 chr2:27137091-27138329- not annotated LSU-rRNA_Hsa 54922 546230 chr21:8209807-8209845+ NoOverlap chr21 8209807 8209845 + 5.6830000694 13 0.566836276564 4.01102316838 1.67197690102 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8209806;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8209807-8209845%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8209807-8209845&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0239731830188 -0.0107493069357 0.363764666591 109254 109292 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;109253;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8209807-8209845%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A109254-109292&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSPTWITVVILELIHADGR*PPSRGGCVHLSDQNQPGQPLSGPGR Same 547644 chr21:8209807-8209845+ 56013 56013 -1091 5 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.794871794872 1.0 -0.602146153846 0.2544 -1.69620769231 1.09406153846 0.0167810530233 0.350232887036 33891 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -1.39391538462 0.1751 -3.18121538462 1.7873 -0.0182947254096 0.414406263455 46786 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 54931 560802 chr4:576252-576356- NoOverlap chr4 576252 576356 - 2.64101713896 35 0.222727223185 2.97676572629 -0.335748587336 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;576251;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A576252-576356-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A576252-576356&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00385108323248 -0.0107629463003 0.30078714176 570041 570145 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;570040;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A576252-576356-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A570041-570145&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAAGGVGGWGGTSLLGGAPRAGEGARALRSLRRIGSRRGVAAAAAAAAAAGGGGCGLR None NA NA 0 477 574887 576356 703 703;6245;31841;46311;49193;54444;54931;56343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:574887-576356&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.838095238095 1.01886792453 -0.792265714286 0.3349 -0.254968571429 -0.537297142857 -0.0243281544888 0.329645979879 57044 1278 1278;5393;22990;30652;31516;37018;38104;57044 -8.53267142857 0.2627 -4.1937 -4.33897142857 -0.0354441808174 0.270288776614 61815 1826 1826;3252;19289;35804;46734;55036;61815;71601 0.0 0.134974765429 chrX:54470016-54470457- protein-coding gene protein-coding gene ENSG00000273238 54932 537372 chr2:240568438-240568539+ NoOverlap chr2 240568438 240568539 + 2.32168821552 34 0.247364003967 1.04484407341 1.27684414211 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;240568437;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240568438-240568539%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A240568438-240568539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00403915329123 -0.0107636643845 0.510925001252 241507855 241507956 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;241507854;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240568438-240568539%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A241507855-241507956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGRRTARGRAGRLPARLPVVPAPRRRRRPAPLAR Same 538743 chr2:240568438-240568539+ 51451 51451 3481 0 187 240560378 240572566 225 225;4611;43454;53343;54932;58666;60196 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:240560378-240572566&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.901960784314 1.11714285714 -0.411058823529 0.3684 1.11907058824 -1.53012941176 -0.0302152986891 0.246139534818 60661 635 635;2542;29313;56709;59851;60661;63450 -6.50197352941 0.3559 -0.998476470588 -5.50349705882 -0.0421034009194 0.231386348121 66739 1672 1672;2162;18782;46446;66739;70450;73682 0.0 0.338420824545 chr17:8797360-8799120- ENST00000451363.5,ENST00000418708.3,ENST00000418505.3 UTR5intron,AntiUTR5intron,AntiNCintron coding exon(s) RNPEPL1 extended 5' 54991 547221 chr21:8401745-8401945- NoOverlap chr21 8401745 8401945 - 1.77618507218 67 0.2329492387 1.05459106135 0.721594010827 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8401744;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401745-8401945-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8401745-8401945&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0102515980252 -0.0109062805303 0.521875497912 118182 118382 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118181;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401745-8401945-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118182-118382&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IAARELLCYVRNPDPEAGRLRMV*RQVPHERAVRDGRGGGRLSGRAPFPRTKGTPHRTPVPARGGAR Same 548623 chr21:8401745-8401945- 53025 53025 1966 24 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.716417910448 1.16341886938 -0.3544 0.1018 -1.20464776119 0.850247761194 -0.00266443927244 0.496585698348 42857 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -1.82653880597 0.1125 -2.49777164179 0.671232835821 -0.039726776363 0.535473086907 65020 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0 ENST00000617236.1,ENST00000623860.2 AntiNC,AntiNCintron not annotated SSU-rRNA_Hsa 55008 588637 chr9:23821762-23821851+ NoOverlap chr9 23821762 23821851 + 2.37650659084 30 0.482196790519 0.258376598358 2.11812999249 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23821761;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821762-23821851%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23821762-23821851&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0139688485281 -0.0109380697494 0.600740985769 23821760 23821849 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23821759;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821762-23821851%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23821760-23821849&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLEAGGTPAPPAPRRAAPATALLTRPATASVTPRRRGPAVCSGAGR Same 589583 chr9:23821762-23821851+ 55913 55913 -905 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.788888888889 1.21212121212 -3.16214 0.6066 -7.46563 4.30349 -0.0361827857712 0.715467506687 64407 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -6.08373666667 0.2889 -10.5234833333 4.43974666667 -0.0130895195964 0.618552473762 42918 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000544538.5,ENST00000380117.5,ENST00000462649.1 AntiUTR5,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 55047 496193 chr12:70448633-70448659- NoOverlap chr12 70448633 70448659 - 6.9519111183 9 0.315800717174 -2.56406627761 9.51597739591 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;70448632;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70448633-70448659-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A70448633-70448659&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0278894050296 -0.0110368460296 1.0332599807 70842413 70842439 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;70842412;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A70448633-70448659-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A70842413-70842439&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATATEISVFIKACQNVGTTTHLAQTFAAMMTGATCYNCGQTGHMAK Same 498193 chr12:70448633-70448659- 48000 48000 7047 0 155 70445357 70448659 185 185;2275;2689;3428;4542;14519;18412;21487;26717;30512;33200;55047 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:70445357-70448659&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 0.0 0.843744444444 0.14 -3.63394444444 4.47768888889 0.0256513501535 0.596042152265 30383 18583 18583;19614;23676;23895;28123;30027;30383;30715;31236;31433;34728;34973 6.94508888889 0.1898 -8.77315555556 15.7182444444 0.0638956433219 0.900548256584 16177 2961 2961;3122;3303;3573;3842;4709;5094;6184;6284;7929;16177;24292 0.0 0.0 not annotated potentially spurious 55094 510491 chr16:3150679-3150747+ NoOverlap chr16 3150679 3150747 + 3.44747834102 23 0.630145856346 2.14097825988 1.30650008113 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;3150678;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3150679-3150747%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A3150679-3150747&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0392515648392 -0.0111842078907 0.434112858172 3200680 3200748 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;3200679;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A3150679-3150747%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A3200680-3200748&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IAGSHTAAGPRGLMDKASDSGSED*GFESLRGR Same 512127 chr16:3150679-3150747+ 58231 58231 -3137 8 256 3144015 3150751 334 334;814;1899;3328;3506;5705;11798;14824;15461;50287;55094 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:3144015-3150751&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.536231884058 1.28571428571 0.6546 0.9233 0.938682608696 -0.284082608696 -0.00374499468891 0.303957646412 43459 167 167;1186;1262;1661;1809;1880;2134;2541;2601;5815;43459 -3.01600434783 0.4149 -0.873752173913 -2.14225217391 -0.0321185588353 0.320051847865 59008 1889 1889;2882;2930;3314;3490;3499;6163;6623;16490;31726;59008 0.0 0.0238967204115 chr19:58409148-58409206+ pseudogene extension CASP16P pseudogene extended (ENSG00000228146) 55110 546365 chr21:8396977-8397522+ NoOverlap chr21 8396977 8397522 + 1.13662967483 182 0.183085122705 0.977743976555 0.158885698274 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8396976;546;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396977-8397522%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8396977-8397522&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0281228976482 -0.0112089497602 0.677323886185 157371 157916 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157370;546;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396977-8397522%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157371-157916&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAEEKKLTRIPSVTASEQGRAQRRIPAPRRGAGHVAYGRPAPRRRSWGAQVLLIEAQPVDGVRPVAAPGAPGPGLPGVGLLGNAAQSGW*TPSKAKYRHETDSQQVP*GKVEKNFEERVQEGVKPLRGKRVGSAQSARRIQPGGGSGRVGGPADLSRPPFLPTPPPALPSPAAPPPPPRRGRAPAGAGVGGR Same 547778 chr21:8396977-8397522+ 62942 62942 -7832 93 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.67032967033 0.961956521739 -2.6805532967 0.2567 -2.13745714286 -0.543096153846 -0.0189352512033 0.705202687038 53430 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -6.88285494505 0.3775 -4.90980769231 -1.97304725275 -0.0352635610623 0.417838795618 61663 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0724790247633 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 55111 546426 chr21:8441197-8441742+ NoOverlap chr21 8441197 8441742 + 1.13662967483 182 0.183085122705 0.977743976555 0.158885698274 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441196;546;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441197-8441742%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441197-8441742&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0281228976482 -0.0112089497602 0.677323886185 157371 157916 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157370;546;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441197-8441742%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157371-157916&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAEEKKLTRIPSVTASEQGRAQRRIPAPRRGAGHVAYGRPAPRRRSWGAQVLLIEAQPVDGVRPVAAPGAPGPGLPGVGLLGNAAQSGW*TPSKAKYRHETDSQQVP*GKVEKNFEERVQEGVKPLRGKRVGSAQSARRIQPGGGSGRVGGPADLSRPPFLPTPPPALPSPAAPPPPPRRGRAPAGAGVGGR Same 547839 chr21:8441197-8441742+ 62943 62943 -7832 93 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.672161172161 0.956699928724 -1.21333571429 0.2871 -1.22334340659 0.0100076923077 0.0191337037604 0.738206896402 32951 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -5.50523131868 0.3644 -5.77901043956 0.273779120879 0.0527323897348 0.496457642078 18177 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0513824056391 chr16:376544-376812- not annotated LSU-rRNA_Hsa 55269 498561 chr13:74554805-74554858+ NoOverlap chr13 74554805 74554858 + 4.06758884258 18 0.886739909972 2.1615277595 1.90606108308 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;74554804;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A74554805-74554858%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A74554805-74554858&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0819376855605 -0.0115991809136 0.464612155411 75128942 75128995 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;75128941;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A74554805-74554858%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A75128942-75128995&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNNLSTAISPGKAEGSASAKRQMVPHIQ Same 500578 chr13:74554805-74554858+ 53819 53819 1450 0 24632 74554805 74554858 Best 55269 55269 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:74554805-74554858&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.592592592593 0.428571428571 2.94916666667 0.9965 -0.170083333333 3.11925 0.157000941087 0.567338845669 11098 Best 11098 11098 -3.23188333333 0.8836 -9.67220555556 6.44032222222 0.0468057276541 0.642767863444 19376 Best 19376 19376 0.0 0.0 ENST00000596240.5,ENST00000446691.6 NC,NCintron not annotated potentially spurious 55270 546391 chr21:8401744-8401986+ NoOverlap chr21 8401744 8401986 + 1.78813950625 81 0.224791012624 1.96440124369 -0.176261737437 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8401743;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401744-8401986%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8401744-8401986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0128491540574 -0.0115993262188 0.395681143006 118181 118423 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118180;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401744-8401986%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118181-118423&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGRVPRRAPGPGSGAECPSSWETGRGRRGGRPLARHAPHVRGEPGAKPFVDDLLLGRGFVRSRAAPSLRSIESQPSTQGFVRAR Same 547804 chr21:8401744-8401986+ 59769 59769 -4499 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.691358024691 1.20535714286 0.802819753086 0.0988 0.611104938272 0.191714814815 0.00636205946536 0.443150783002 38394 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 0.119707407407 0.1112 -0.261211111111 0.380918518519 -0.0200187199846 0.527238800905 48107 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.209197191284 chr19:44649809-44650105+ ENST00000617236.1,ENST00000623860.2 NC,NCintron not annotated LSU-rRNA_Hsa 55305 518073 chr17:48598270-48598392+ NoOverlap chr17 48598270 48598392 + 2.38609759637 41 0.882993820096 1.66732439908 0.718773197292 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48598269;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48598270-48598392%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48598270-48598392&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.137152966186 -0.0117059670488 0.468851642564 46675632 46675754 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46675631;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48598270-48598392%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46675632-46675754&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GDGEVPVRARRKYNHLIQH*PMAEAGIVK*HPGGAQPARGTR Same 519474 chr17:48598270-48598392+ 54538 54538 767 22 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.585365853659 0.477855477855 0.159836585366 0.9996 -0.590931707317 0.750768292683 0.0912356900301 0.476020092098 16875 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -6.30181219512 0.9043 -8.75134146341 2.44952926829 0.0369216127494 0.571128968486 21792 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000225648.3,ENST00000490419.1 NCintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 55321 531715 chr19:48469377-48469409- NoOverlap chr19 48469377 48469409 - 6.43113643473 11 0.952662352525 4.50080010566 1.93033632907 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48469376;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469377-48469409-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48469377-48469409&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0822774158343 -0.0117347366965 0.362564726561 48972634 48972666 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48972633;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48469377-48469409-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48972634-48972666&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WPAGSGEPAQTPREPPPPPQRQSSALK Same 533190 chr19:48469377-48469409- 56599 56599 -1278 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.787878787879 0.862745098039 2.53032727273 0.9876 -1.92395454545 4.45428181818 0.0510580740687 0.612803815393 22917 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -0.127045454545 0.4293 -4.97942727273 4.85238181818 0.00151721184851 0.524231886569 34610 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.0 ENST00000600650.1,ENST00000593476.1,ENST00000427476.4,ENST00000391881.7,ENST00000595676.1 NC,NCintron,AntiUTR5,AntiNC,AntiUTR5intron coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 55455 523902 chr18:14244569-14244664+ NoOverlap chr18 14244569 14244664 + 2.33848441509 32 0.347185664149 0.554453154095 1.78403126099 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;14244568;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A14244569-14244664%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A14244569-14244664&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00244137368162 -0.0120393804949 0.568388221249 14244568 14244663 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;14244567;96;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A14244569-14244664%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A14244568-14244663&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SNKKIAMISTKLLMEKEWVKYFLSTLPTRRGQESPCVENLTSIVLNSK Same 525338 chr18:14244569-14244664+ 52315 52315 3140 0 21727 14242348 14244664 42572 42572;55455 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:14242348-14244664&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.427083333333 0.22966507177 4.740446875 0.8206 -8.5616125 13.302059375 0.752033643397 1.0656095933 1858 Best 1858 1858;2438 9.02876875 0.4248 -7.7012875 16.73005625 0.781504472696 1.03506088131 2544 2273 2273;2544 0.899119900746 chr9:33568671-33568941+ 0.803901190203 chr10:27012882-27013110- ENST00000580200.1 NC pseudogene ankyrin repeat domain 20 family, member A5, pseudogene (ENSG00000186481) 55625 558086 chr3:195909641-195909766- NoOverlap chr3 195909641 195909766 - 2.11838093968 42 0.216980384891 2.24610235436 -0.12772141468 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;195909640;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195909641-195909766-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A195909641-195909766&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0074607341202 -0.012416267242 0.358148299656 195636512 195636637 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;195636511;126;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195909641-195909766-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A195636512-195636637&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRRARGARQEGRRAGAHLRGPARGGRPAGRR*RPEARAGRRAR Same 559060 chr3:195909641-195909766- 54639 54639 986 10 319 195908695 195909767 435 435;1687;7715;11110;49936;55625;56550 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:195908695-195909767&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.873015873016 1.13759479957 -1.34137380952 0.4753 -2.02531190476 0.683938095238 -0.0408317160239 0.45276701375 67033 374 374;1346;2237;3722;53564;66857;67033 -1.51697619048 0.3982 -2.15974285714 0.642766666667 0.038331719249 0.51037136342 21424 2327 2327;2340;2709;4762;21424;33118;65052 0.0 0.23603382109 chr3:45225125-45226027- ENST00000468819.1,ENST00000458180.1 NCintron,AntiNCintron under investigation TNK2 contains a series of NPRs in its 5' UTR that highlight a reading frame and STOP codon that are conserved in placental mammals, although no ATG initiation codon has been identified. However, a [CTG] codon has been identified that corresponds well to the 5' end of the NPR region and a consistent initiation codon peak in ribosome profiling data, giving a prospective 153aa single exon CDS [chr3:195909582-195908695]. 55688 538360 chr2:44168936-44168986- NoOverlap chr2 44168936 44168986 - 4.14252352013 17 0.763689811013 1.62981172695 2.51271179318 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;44168935;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A44168936-44168986-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A44168936-44168986&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0468890071668 -0.012583766491 0.534689387064 44396075 44396125 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;44396074;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A44168936-44168986-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A44396075-44396125&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ESETPAAPAGNSPATARGTRPSEHR Same 539735 chr2:44168936-44168986- 56147 56147 -459 0 1510 44167863 44168986 2246 2246;55688 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:44167863-44168986&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.686274509804 0.838815789474 1.8234 0.8164 -0.0281529411765 1.85155294118 0.013668256667 0.445301813784 35251 9376 9376;35251 -0.532876470588 0.3291 -2.83422941176 2.30135294118 -0.000799873485498 0.465971824822 35773 13268 13268;35773 0.0 0.113377374317 chr12:57470317-57472061+ ENST00000282412.8,ENST00000378540.8 AntiUTR5,AntiNC not annotated putative regulatory region 55919 469937 chr1:6497370-6497474- NoOverlap chr1 6497370 6497474 - 1.58731426924 35 0.233214094977 -0.0605657156557 1.6478799849 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;6497369;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6497370-6497474-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A6497370-6497474&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0175494685917 -0.0130806997632 0.568543309175 6557430 6557534 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;6557429;105;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A6497370-6497474-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A6557430-6557534&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPAALLSPRPPPPRRGRRGSSPPTCPARLPCEGPAAAALRPPSPRRPR Same 471819 chr1:6497370-6497474- 49936 49936 5983 0 200 6497370 6506158 243 243;55919 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:6497370-6506158&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.857142857143 0.910249872514 -0.966302857143 0.3535 -1.09950857143 0.133205714286 -0.0265979842008 0.387503027739 58432 779 779;58432 -4.09334571429 0.216 -4.26463714286 0.171291428571 -0.0493915130008 0.463135546929 71094 1771 1771;71094 0.0 0.265875157645 chr17:81824287-81824424- ENST00000400915.7,ENST00000377740.4 UTR5,CDSintron coding exon(s) PLEKHG5 alternative first exon 55930 529178 chr19:51692638-51692691+ NoOverlap chr19 51692638 51692691 + 4.09248323407 18 0.551709434314 2.21638892757 1.87609430651 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51692637;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51692638-51692691%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51692638-51692691&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.015993474565 -0.0131018325011 0.460386095894 52195891 52195944 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52195890;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51692638-51692691%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52195891-52195944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TPGSWHPPVEPTLRGLRRTQARVCGSVSGAHHR Same 530637 chr19:51692638-51692691+ 56951 56951 -1021 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.703703703704 0.9 2.34865555556 0.8855 -2.05466111111 4.40331666667 0.101297626288 0.679966194215 15701 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 -4.97827222222 0.5186 -13.6396 8.66132777778 0.0652491325363 0.726762291165 15948 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.0607244762951 chr11:65598291-65598628- ENST00000384819.1,ENST00000602324.1 NC,AntiNC protein-coding gene protein-coding gene ENSG00000182310 55945 546401 chr21:8436376-8436618+ NoOverlap chr21 8436376 8436618 + 0.998156784401 81 0.165747075119 1.08783702516 -0.089680240754 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436375;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436376-8436618%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436376-8436618&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00541592679868 -0.0131320283581 0.397686933324 152550 152792 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152549;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436376-8436618%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152550-152792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGARALRPHGATVPGPGTAVRLSLAARTSGPPRGAGGAPSPPRRRPRAPAARARAWPPVPPGRRARVGPSASSRAGATKKRR Same 547814 chr21:8436376-8436618+ 58286 58286 -2341 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.880658436214 1.27447552448 0.00265432098765 0.263 -0.268155555556 0.270809876543 0.00223145431471 0.433560221765 40374 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 2.87388518519 0.23 2.30131604938 0.572569135802 0.0672344554511 0.54195093681 15605 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.25656283365 chr10:133352247-133352440+ not annotated LSU-rRNA_Hsa 56010 548038 chr22:20702263-20702322+ NoOverlap chr22 20702263 20702322 + 3.14246488772 20 0.421792935073 0.166025018692 2.97643986903 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;20702262;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20702263-20702322%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A20702263-20702322&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0124527085017 -0.0132877831451 0.632792199828 21056551 21056610 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;21056550;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A20702263-20702322%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A21056551-21056610&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ACLNQRLQDLSERERRCAGNAPLPGGR Same 549458 chr22:20702263-20702322+ 53479 53479 2531 0 1508 20702136 20704490 2244 2244;3957;4169;8406;12453;12907;29209;29720;35559;56010 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:20702136-20704490&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.884210526316 1.671215 0.8285 1.23834 0.432875 0.00519358221434 0.345527553205 38948 130 130;847;1263;1735;2520;3116;3637;4021;20091;38948 0.960095 0.4594 -5.549215 6.50931 0.133159951408 0.666057766232 8932 1022 1022;2706;2800;2896;3161;3297;5293;6158;8692;8932 0.427955258203 chr22:18527981-18528276+ 0.509957428669 chr22:18527981-18528276+ ENST00000450925.6 NC pseudogene transmembrane protein 191A pseudogene (ENSG00000226287) 56146 539518 chr2:89624300-89624341- NoOverlap chr2 89624300 89624341 - 4.35144999198 14 0.348607614252 2.22734993483 2.12410005714 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;89624299;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89624300-89624341-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A89624300-89624341&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00063447313625 -0.0135758379318 0.450273408137 91886567 91886608 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;91886566;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A89624300-89624341-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A91886567-91886608&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QNLNTEEEVENVADIGFDCNMCRPYMPASNGK Different 540873 chr2:89624267-89624341- 38900 38900 17246 0 1126 89622214 89637657 1710 1710;1943;6332;11544;19922;20755;36821;56146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:89622214-89637657&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.380952380952 0.0 11.7246928571 0.7616 8.92553571429 2.79915714286 0.219466539415 0.458493881836 8004 23 23;45;328;857;1530;2184;2340;8004 33.6202 0.8808 24.2766357143 9.34356428571 0.902697947081 0.622532565381 2090 334 334;1274;1390;1454;1567;1631;1812;2090 0.998471473973 chr7:152222573-152222682- 0.973138506214 chr7:152222573-152222682- pseudogene lysine (K)-specific methyltransferase 2C (KMT2C) pseudogene (ENSG00000283132) 56283 585659 chr8:144462427-144462459+ NoOverlap chr8 144462427 144462459 + 5.84268183058 11 0.392681218225 1.65956371752 4.18311811306 ENST00000530374.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144462426;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144462427-144462459%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144462427-144462459&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0183873305565 -0.0138400887017 0.662158288347 145687810 145687842 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145687809;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144462427-144462459%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145687810-145687842&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGCPQPLLGRRVGVAGRLLQL Same 586597 chr8:144462427-144462459+ 57276 57276 -993 0 455 144462230 144473371 652 652;52414;53196;56283;57650;72805 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144462230-144473371&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.848484848485 1.17857142857 1.40151818182 0.3531 -6.0805 7.48201818182 -0.00737347597965 0.84401158859 45511 886 886;41693;42652;43967;45511;56412 -8.01639090909 0.4021 -21.0920454545 13.0756545455 0.0161063782747 0.814164502199 28339 1535 1535;18941;28339;51248;53436;61641 0.0 0.142740132317 chr16:166580-166708+ ENST00000530374.5,ENST00000438911.6 AntiCDS,AntiCDSintron coding exon(s) KIFC2 frame corrected in final exon 56303 466655 chr1:111990263-111990382+ NoOverlap chr1 111990263 111990382 + 1.76354246847 40 0.552422751202 -0.445969952643 2.20951242112 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;111990262;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111990263-111990382%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A111990263-111990382&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.078067736275 -0.0138849335218 0.668181680906 112532885 112533004 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;112532884;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111990263-111990382%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A112532885-112533004&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGGETRQSLVRLPGRVEES*GVPGGGGVYRRGCERVCQRGWAR Same 468515 chr1:111990263-111990382+ 60413 60413 -4110 17 3139 111987704 111990382 4367 4367;39514;56303;64208;68005;68136;69319 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:111987704-111990382&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.691666666667 0.952380952381 -10.5543025 0.9029 -11.659165 1.1048625 -0.061171855347 0.386639312593 72576 9251 9251;20935;24066;40454;53078;72081;72576 -17.437915 0.5024 -21.0546975 3.6167825 -0.0581622824352 0.532554185525 73297 11706 11706;24170;34786;49854;53572;64032;73297 0.0 0.0628323139747 chr3:47409928-47411686+ ENST00000428461.1,ENST00000442751.1 NC,NCintron not annotated putative regulatory region 56311 524602 chr18:54418828-54418854+ NoOverlap chr18 54418828 54418854 + 7.42172202137 9 0.656061646448 3.0333887736 4.38833324777 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;54418827;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54418828-54418854%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A54418828-54418854&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0135354131197 -0.013902110558 0.633650586617 51945198 51945224 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;51945197;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A54418828-54418854%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A51945198-51945224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTA*IGVVDDDGEVVTR Same 526038 chr18:54418828-54418854+ 57934 57934 -1623 4 663 54415278 54424623 1020 1020;1399;1951;1974;2187;2640;3987;7059;26481;56311 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:54415278-54424623&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.0 21.7988444444 0.812 10.4796555556 11.3191888889 0.363370037443 0.825549572975 4481 1312 1312;1532;1793;1867;1963;3255;3308;3468;3714;4481 49.8477666667 0.6298 26.4403333333 23.4074333333 0.803971652319 0.833261136223 2457 85 85;217;311;1380;1426;2121;2398;2457;2578;2838 0.0 0.0 pseudogene unitary pseudogene ENSG00000283613 56343 560794 chr4:575505-575531- NoOverlap chr4 575505 575531 - 3.80319997999 9 0.181831591262 -1.41766660743 5.22086658743 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;575504;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575505-575531-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A575505-575531&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.021197109842 -0.0139869613995 0.786141377692 569294 569320 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;569293;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A575505-575531-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A569294-569320&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGSSPGSAPGSTPGSAPGSAPGSAPGSAPGAPR Same 561782 chr4:575505-575531- 56045 56045 298 0 477 574887 576356 703 703;6245;31841;46311;49193;54444;54931;56343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:574887-576356&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.925925925926 0.876623376623 4.0444 0.2621 0.0143444444444 4.03005555556 0.00947703550111 0.549216348999 37018 1278 1278;5393;22990;30652;31516;37018;38104;57044 2.40327777778 0.2559 -1.36271111111 3.76598888889 -0.0182291715054 0.459339516984 46734 1826 1826;3252;19289;35804;46734;55036;61815;71601 0.0 0.0891054302388 chr12:57823904-57824005- protein-coding gene protein-coding gene ENSG00000273238 56385 549329 chr22:50674758-50674865+ NoOverlap chr22 50674758 50674865 + 1.56725831578 36 0.252333358765 -0.808399957087 2.37565827287 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50674757;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674758-50674865%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50674758-50674865&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0148423218672 -0.014107123958 0.671052312957 51113186 51113293 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51113185;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674758-50674865%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51113186-51113293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSPTPAGRARRPGPPAHGYSPLPRRLRRDPPHRQGGAPGSPAPGAGLRPR Same 550700 chr22:50674758-50674865+ 48485 48485 7900 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.861111111111 0.857142857143 -3.363525 0.4312 -8.93574722222 5.57222222222 -0.019995637644 0.832248848105 54153 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -11.2896888889 0.408 -16.9888333333 5.69914444444 -0.0171270228577 0.660922426707 45900 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.107005081072 chr12:109768012-109769288+ ENST00000262795.5 NCintron known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 56391 531030 chr19:37830016-37830048- NoOverlap chr19 37830016 37830048 - 5.91602717746 11 0.809872587167 1.67747273228 4.23855444518 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37830015;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830016-37830048-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37830016-37830048&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.030877559122 -0.0141232598474 0.667932377545 38320656 38320688 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38320655;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830016-37830048-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38320656-38320688&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NADEIQEVPKPFLPSFFFMFETVFVPR Same 532497 chr19:37830016-37830048- 53093 53093 3298 0 111 37829091 37833481 132 132;139;298;685;731;916;1037;1165;1199;1335;1604;1659;2285;4196;6356;8064;56391 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37829091-37833481&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.424242424242 0.0 17.9459 0.9208 1.51707272727 16.4288272727 0.655077356643 1.00437383655 2280 168 168;446;482;922;968;1042;1059;1143;1309;1557;1946;2211;2267;2280;2413;4920;7092 27.8336363636 0.4738 1.81052727273 26.0231090909 0.685676430719 1.02387733176 2861 28 28;1050;1202;1366;1505;1566;1850;2058;2133;2254;2404;2408;2716;2841;2861;3168;4006 0.172902440338 chr19:37892578-37895456- 0.48577777368 chr19:37892578-37895456- ENST00000592640.5,ENST00000443870.2 NCintron,AntiNC pseudogene WD repeat domain 87 (WDR87) pseudogene (ENSG00000225868) 56444 547161 chr21:8392664-8393185- NoOverlap chr21 8392664 8393185 - 0.881854008284 174 0.175323179945 0.273826446299 0.608027561985 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8392663;522;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392664-8393185-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8392664-8393185&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0424121353675 -0.0142423255293 0.713413036728 153048 153569 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153047;522;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392664-8393185-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153048-153569&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPVLLFFVTTSPGREWVICAPAAFLGCGSRFSGSLSGIEP*FPVTRGHHGRHGDYHRKLIGQTFEWVVAATGGVRSARGYLESPKPPAPAPRPGPERG*PGWF*SDKCTHPPREGGQRPSACISSRITTVIQVGEERATKGTITDLMSHSQFHCTGRAYLDMHGLIFETSICYWQDQPGR Same 548569 chr21:8392664-8393185- 63792 63792 -7348 98 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.584291187739 0.965419354839 -1.10727816092 0.2514 -1.74393448276 0.636656321839 0.0460116757115 0.758809647564 24051 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -1.0988545977 0.0803 -1.64312241379 0.544267816092 0.0833605656214 0.550089982794 13346 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0 ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 56445 547257 chr21:8436874-8437395- NoOverlap chr21 8436874 8437395 - 0.881854008284 174 0.175323179945 0.273826446299 0.608027561985 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436873;522;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436874-8437395-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436874-8437395&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0424121353675 -0.0142423255293 0.713413036728 153048 153569 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153047;522;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436874-8437395-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153048-153569&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPVLLFFVTTSPGREWVICAPAAFLGCGSRFSGSLSGIEP*FPVTRGHHGRHGDYHRKLIGQTFEWVVAATGGVRSARGYLESPKPPAPAPRPGPERG*PGWF*SDKCTHPPREGGQRPSACISSRITTVIQVGEERATKGTITDLMSHSQFHCTGRAYSDMHGLIFETSICYWQDQPGR Same 548660 chr21:8436874-8437395- 63793 63793 -7348 98 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.586206896552 0.959025849178 -3.82591206897 0.3139 -4.6752045977 0.849292528736 -0.0339022351267 0.755802121443 62980 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -5.35391149425 0.2409 -6.63243850575 1.27852701149 0.0292629552364 0.540195129809 23971 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.098291317098 chr12:120640686-120641339+ not annotated SSU-rRNA_Hsa 56450 659494 chr17:47896187-47896285- Extension chr17 47896187 47896285 - 2.26337268407 33 0.893944249083 0.280536374359 1.98283630971 chr17:47896187-47896321- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;47896186;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896187-47896285-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A47896187-47896285&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0144133584254 -0.0142532195605 0.601527843046 45973553 45973651 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;45973552;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896187-47896285-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A45973553-45973651&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DPPLITTSSSLASAASAATESLTPPAKQPPIPEPATAR Same 660115 chr17:47896187-47896285- 54873 54873 1577 0 443 47896176 47896544 633 633;10409;17370;20193;30561;56450;73094;73160 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:47896176-47896544&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.737373737374 1.17857142857 0.973833333333 0.9876 0.597084848485 0.376748484848 0.0855626558418 0.417166865082 17549 6473 6473;12368;17549;37782;39868;58958;68592;73642 -3.11051515152 0.426 -3.19118484848 0.0806696969697 -0.0020585411372 0.454771593144 36380 14976 14976;26600;36070;36380;45476;50232;50264;57233 0.0 0.0104791510285 chr2:74499333-74499537- ENST00000376741.4 AntiUTR5 not annotated putative regulatory region 56479 482304 chr10:116836194-116836265- NoOverlap chr10 116836194 116836265 - 3.03471240836 24 0.99826682943 0.335095882416 2.69961652594 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;116836193;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A116836194-116836265-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A116836194-116836265&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00101805737704 -0.0143206903965 0.631121219117 118595705 118595776 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;118595704;72;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A116836194-116836265-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A118595705-118595776&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QPIVATVGGTCRKCAKARQGARAFQ*APQLER Same 484229 chr10:116836194-116836265- 62535 62535 -6056 5 599 116834939 116836390 922 922;13718;25613;56479 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:116834939-116836390&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.184143222506 4.06455 0.9929 1.8854 2.17915 0.257758383381 0.534113491538 6718 437 437;6718;9282;51004 -8.43670416667 0.6936 -9.38905416667 0.95235 -0.0377540882776 0.431470697783 63529 3518 3518;11846;63529;65009 0.0 0.0 ENST00000434227.1 NCintron coding exon(s) HSPA12A alternative first exon 56528 547230 chr21:8433812-8434006- NoOverlap chr21 8433812 8434006 - 1.16789693127 65 0.186724181442 -0.772806172188 1.94070310346 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8433811;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8433812-8434006-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8433812-8434006&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0102642229494 -0.0144173529851 0.681791136729 149986 150180 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;149985;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8433812-8434006-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A149986-150180&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPPERAARRAGGTAPPPPRRGAARKSTTTGGDSEGCLPRQRTPPARPATQKAAGGTARSGRGPHPTPSHTHR Same 548633 chr21:8433812-8434006- 44325 44325 12203 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.794871794872 0.974350433045 -3.36142923077 0.264 -5.22266 1.86123076923 -0.0376924427227 0.520226939698 65249 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 1.55700923077 0.2855 -3.32611692308 4.88312615385 0.161124252335 0.72199336704 7513 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.146271576453 chr11:72814446-72814563+ not annotated SSU-rRNA_Hsa 56550 558085 chr3:195909572-195909622- NoOverlap chr3 195909572 195909622 - 3.39985876224 17 0.319469165556 0.432194259237 2.967664503 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;195909571;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195909572-195909622-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A195909572-195909622&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0153962796102 -0.0144540583963 0.601963288124 195636443 195636493 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;195636442;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A195909572-195909622-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A195636443-195636493&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DSGAARGGRGGPGRAGGVSGRR Same 559059 chr3:195909572-195909622- 53544 53544 3006 0 319 195908695 195909767 435 435;1687;7715;11110;49936;55625;56550 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:195908695-195909767&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.882352941176 1.22727272727 -1.29945882353 0.424 -6.34822352941 5.04876470588 -0.0191191772549 0.714758874328 53564 374 374;1346;2237;3722;53564;66857;67033 -1.99397058824 0.313 -6.40457647059 4.41060588235 0.00464283847816 0.553034253458 33118 2327 2327;2340;2709;4762;21424;33118;65052 0.0 0.238433229168 chr16:58026351-58026512+ ENST00000468819.1,ENST00000458180.1 NCintron,AntiNCintron under investigation TNK2 contains a series of NPRs in its 5' UTR that highlight a reading frame and STOP codon that are conserved in placental mammals, although no ATG initiation codon has been identified. However, a [CTG] codon has been identified that corresponds well to the 5' end of the NPR region and a consistent initiation codon peak in ribosome profiling data, giving a prospective 153aa single exon CDS [chr3:195909582-195908695]. 56582 518087 chr17:48610955-48611023+ NoOverlap chr17 48610955 48611023 + 2.55021739662 23 0.682543347232 -1.09461734339 3.64483474001 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48610954;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48610955-48611023%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48610955-48611023&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0733438456869 -0.014523248612 0.744757584366 46688317 46688385 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46688316;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48610955-48611023%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46688317-46688385&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DVLVSVLRDSLIYYRIRVQIYTKKDPLFPLR Same 519488 chr17:48610955-48611023+ 60800 60800 -4218 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.391304347826 0.758241758242 0.100947826087 0.9807 -1.98823913043 2.08918695652 0.0448411814558 0.510728634487 24344 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -6.69053913043 0.9352 -15.0654 8.37486086957 0.0493236168893 0.740124197984 18876 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000239165.8,ENST00000567101.2 AntiUTR5,AntiNCintron not annotated putative regulatory region 56634 581239 chr7:57196059-57196118- NoOverlap chr7 57196059 57196118 - 2.77148496881 20 0.327728694591 -0.463624924421 3.23510989323 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;57196058;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57196059-57196118-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A57196059-57196118&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0260592293872 -0.0146736693354 0.668634110711 57263766 57263825 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;57263765;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A57196059-57196118-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A57263766-57263825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVVVAG*TLFVCIYVAVEITWGNR Same 582193 chr7:57196059-57196118- 50878 50878 5756 5 998 57196059 57196531 1525 1525;56634 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:57196059-57196531&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.366666666667 0.0 19.767135 0.7724 3.382295 16.38484 0.735673941479 1.02365850779 1952 878 878;1952 27.61536 0.8346 12.62751 14.98785 0.976323457882 0.884787746126 1490 Best 1490 1490;1575 0.823653607558 chrM:14149-14673- 0.894604607139 chrM:14149-14673- pseudogene mitochondrial pseudogene region (ENSG00000284572) 56664 472437 chr1:53274749-53274784- NoOverlap chr1 53274749 53274784 - 5.78319170574 12 0.865995269703 3.44991665085 2.33327505489 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;53274748;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A53274749-53274784-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A53274749-53274784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0764007457589 -0.0147540312067 0.436236648679 53740421 53740456 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;53740420;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A53274749-53274784-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A53740421-53740456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPADFSVRVASAWTAGKCVMCR Same 474314 chr1:53274749-53274784- 53745 53745 2919 0 308 53274696 53274821 415 415;5053;56664 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:53274696-53274821&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.638888888889 1.6 3.19378333333 0.9821 2.150825 1.04295833333 0.0315754814445 0.32729433093 28108 1812 1812;28108;61633 -32.1328166667 0.9943 -22.0018416667 -10.130975 0.0404266321165 -0.00378038823368 20948 815 815;20948;44915 0.0 0.307942262973 chr19:11107392-11107514+ ENST00000480045.5,ENST00000306052.10,ENST00000465675.5 NC,CDSintron,UTR5intron pseudo-exon LRP8 pseudo-exon. 56774 546283 chr21:8218783-8218947+ NoOverlap chr21 8218783 8218947 + 1.81648909693 55 0.216116301491 1.87277456021 -0.0562854632735 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8218782;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8218783-8218947%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8218783-8218947&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0104087129756 -0.0150213982944 0.402081615358 118259 118423 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118258;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8218783-8218947%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118259-118423&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGRPLARHAPHVRGEPGAKPFVDDLLLGRGFVRSRAAPSLRSIESQPSTQGFVRAR Same 547696 chr21:8218783-8218947+ 57007 57007 -233 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.636363636364 1.20262390671 0.682765454545 0.0833 0.141974545455 0.540790909091 0.0177986410109 0.488273016255 33474 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 2.03967090909 0.1218 0.289729090909 1.74994181818 -0.00352357075998 0.585862931827 37172 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 56775 546455 chr21:8446053-8446217+ NoOverlap chr21 8446053 8446217 + 1.81648909693 55 0.216116301491 1.87277456021 -0.0562854632735 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8446052;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446053-8446217%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8446053-8446217&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0104087129756 -0.0150213982944 0.402081615358 118259 118423 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118258;165;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446053-8446217%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118259-118423&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGRPLARHAPHVRGEPGAKPFVDDLLLGRGFVRSRAAPSLRSIESQPSTQGFVRAR Same 547868 chr21:8446053-8446217+ 57008 57008 -233 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.636363636364 1.20262390671 0.532569090909 0.0833 -0.0126381818182 0.545207272727 0.0157448360914 0.486334415936 34327 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -0.496267272727 0.1236 -0.00697818181818 -0.489289090909 -0.0374531524768 0.483836509864 63301 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.392445324063 chr2:27137091-27138329- not annotated LSU-rRNA_Hsa 56798 546341 chr21:8392837-8393172+ NoOverlap chr21 8392837 8393172 + 1.51536605441 112 0.175430249921 0.780097294067 0.735268760339 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8392836;336;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392837-8393172%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8392837-8393172&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00054135119237 -0.0150544805889 0.517348317421 153221 153556 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153220;336;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392837-8393172%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153221-153556&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YMPTGADPLRGGDACIYQIKTNPVSPSPAPAGGRAPAALVTLDNLGPIARPPWRRRPIRTSALSTFDGSRRAYHGDHG*RGIRVRFRRGSLRNGYHIQGRQQARKLPTPDPGR Same 547758 chr21:8392837-8393172+ 54642 54642 2156 33 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.651785714286 1.00934579439 -1.34488035714 0.2507 -1.17109196429 -0.173788392857 -0.0296143429595 0.385467602125 60285 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -1.34488035714 0.0784 -1.17109196429 -0.173788392857 -0.0136523315685 0.511486127751 43321 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0 ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 56799 546403 chr21:8437047-8437382+ NoOverlap chr21 8437047 8437382 + 1.51536605441 112 0.175430249921 0.780097294067 0.735268760339 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8437046;336;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437047-8437382%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8437047-8437382&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00054135119237 -0.0150544805889 0.517348317421 153221 153556 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153220;336;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437047-8437382%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153221-153556&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YMPTGADPLRGGDACIYQIKTNPVSPSPAPAGGRAPAALVTLDNLGPIARPPWRRRPIRTSALSTFDGSRRAYHGDHG*RGIRVRFRRGSLRNGYHIQGRQQARKLPTPDPGR Same 547816 chr21:8437047-8437382+ 54643 54643 2156 33 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.651785714286 1.00934579439 -4.92246964286 0.3133 -4.33079464286 -0.591675 -0.0875962671374 0.300302645768 73533 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -7.45097321429 0.2436 -5.83915803571 -1.61181517857 -0.0426809303225 0.440991319037 67177 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 not annotated LSU-rRNA_Hsa 56879 501026 chr14:28767116-28767259+ NoOverlap chr14 28767116 28767259 + 3.154558296 48 0.276204826937 3.67187287907 -0.517314583063 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28767115;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28767116-28767259%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28767116-28767259&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0305079646741 -0.0152637874309 0.329409280555 29236322 29236465 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29236321;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28767116-28767259%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29236322-29236465&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSFTPGAVVVSFFFLSFFFSFFFFFLIPEGWLLLLLHDLPAPEPAVQLRCCRSAQCRRCRPRPPRPVRHPPVAAARRAAVPLPRRRRR Same 502918 chr14:28767116-28767259+ 58147 58147 -1268 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.847222222222 1.24675324675 0.438485416667 0.3535 0.75243125 -0.313945833333 -0.0167580580041 0.39477546999 51864 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -10.3991208333 0.5296 -6.8838375 -3.51528333333 -0.0536630661343 0.323156516558 72515 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.124810247087 chr17:18672864-18673055- ENST00000313071.6 UTR5 not annotated putative regulatory region 57003 577641 chr7:27130527-27130595+ NoOverlap chr7 27130527 27130595 + 2.37447817105 23 0.540077821012 -1.34995214787 3.72443031892 ENST00000360046.9,ENST00000428284.2,ENST00000610970.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27130526;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130527-27130595%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27130527-27130595&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.036040613919 -0.0155385929779 0.755013728129 27170146 27170214 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27170145;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130527-27130595%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27170146-27170214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVGGSGLSAAARVRELGLLQRQVLGRGR Same 578680 chr7:27130527-27130595+ 58666 58666 -1663 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.811594202899 0.751020408163 -3.6873826087 0.5951 -5.23109130435 1.54370869565 -0.0442455018208 0.443289567088 68835 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -5.45875217391 0.52 0.0372173913043 -5.49596956522 -0.0467899558013 0.19654165149 69841 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000360046.9,ENST00000317201.6,ENST00000467897.2 NCintron,AntiCDS,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 57024 468355 chr1:199041659-199041694+ NoOverlap chr1 199041659 199041694 + 5.74250845114 12 0.95530759645 2.48895823956 3.25355021159 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;199041658;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A199041659-199041694%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A199041659-199041694&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0535922247508 -0.0155866676589 0.557539720389 199010788 199010823 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;199010787;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A199041659-199041694%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A199010788-199010823&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSTERWKW*ETVETVVK Same 470222 chr1:199041659-199041694+ 58771 58771 -1747 6 12591 199041659 199041770 19990 19990;57024 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:199041659-199041770&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.923076923077 2.572725 0.9617 -0.3259 2.898625 0.0297830934315 0.48877270963 28782 16501 16501;28782 -1.112475 0.7395 -4.76730833333 3.65483333333 0.00689637341032 0.48298250832 32096 7412 7412;32096 0.0 0.0 ENST00000432488.1 NC not annotated potentially spurious 57068 582314 chr7:115673893-115673949- NoOverlap chr7 115673893 115673949 - 3.70044200044 19 0.901792935073 1.08906311738 2.61137888306 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;115673892;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115673893-115673949-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A115673893-115673949&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0417102382367 -0.0157409334713 0.571275217943 115313947 115314003 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;115313946;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115673893-115673949-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A115313947-115314003&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LYIRINLHFTEVYYDDSPRHISPTQR Same 583275 chr7:115673893-115673949- 56221 56221 847 0 5672 115673834 115679526 7911 7911;18821;19702;21896;25172;45048;57068 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:115673834-115679526&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.385964912281 1.01785714286 0.0867578947368 1.0 -1.10444210526 1.1912 0.0137096486137 0.402520654943 35228 9148 9148;20280;33321;35228;35655;36146;49962 -0.287136842105 0.9337 -1.85273684211 1.5656 0.0370470585958 0.449330381425 21757 6859 6859;16053;21757;25065;26080;28039;62910 0.0 0.0 ENST00000471672.1 NCintron not annotated potentially spurious 57104 543797 chr20:49318489-49318521+ NoOverlap chr20 49318489 49318521 + 4.97700909593 11 0.344813666535 3.31346361475 1.66354548118 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;49318488;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49318489-49318521%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A49318489-49318521&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0120780419648 -0.0158262047705 0.349915926909 47935026 47935058 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;47935025;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A49318489-49318521%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A47935026-47935058&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PDVCRPRAPALLLRPSVR Same 545188 chr20:49318489-49318521+ 59681 59681 -2577 0 1366 49318436 49340428 2047 2047;3687;18732;36370;50172;50543;57104 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:49318436-49340428&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.757575757576 1.07142857143 -2.34938181818 0.5094 -6.46951818182 4.12013636364 -0.0199967994303 0.587534871244 54154 3238 3238;3385;16849;16867;36672;53077;54154 -5.52279090909 0.3657 -12.0131545455 6.49036363636 -0.0190716236309 0.581800758304 47365 70 70;869;3100;3618;7110;19303;47365 0.0 0.0 pseudogene somatomedin B and thrombospondin type 1 domain containing (SBSPON) transcribed_unprocessed_pseudogene (ENSG00000283529) 57147 529173 chr19:51689562-51689594+ NoOverlap chr19 51689562 51689594 + 5.46509999579 11 0.320246641281 1.03927275809 4.42582723769 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51689561;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51689562-51689594%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51689562-51689594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0178549569904 -0.0159110575886 0.697107046085 52192815 52192847 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52192814;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51689562-51689594%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52192815-52192847&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPLPCDAGAAGAVSLR Same 530632 chr19:51689562-51689594+ 57235 57235 -88 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.787878787879 1.29411764706 3.54285454545 0.638 -3.93830909091 7.48116363636 0.0444913834384 0.842798082272 24426 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 0.5348 0.3654 -11.4575272727 11.9923272727 0.0686831953348 0.807534370433 15370 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.0343972490324 chr11:65606691-65606804- ENST00000602324.1 AntiNCintron protein-coding gene protein-coding gene ENSG00000182310 57197 501845 chr14:66489002-66489043+ NoOverlap chr14 66489002 66489043 + 5.17794997777 14 0.961730373083 3.00480717421 2.17314280357 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;66489001;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A66489002-66489043%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A66489002-66489043&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0740330437631 -0.0159956430007 0.446418764045 66955720 66955761 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;66955719;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A66489002-66489043%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A66955720-66955761&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MLRKEMEMLWNKVCL Same 503745 chr14:66489002-66489043+ 59084 59084 -1887 0 255 66486676 66492148 330 330;1499;2685;2943;57197 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:66486676-66492148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.47619047619 0.56 -0.5605 0.9983 -4.43476428571 3.87426428571 0.00379087965384 0.594320869535 39601 675 675;2288;2597;2857;39601 0.304071428571 0.3763 -5.68361428571 5.98768571429 0.0353780660588 0.597531243651 22191 2915 2915;4165;4450;4700;22191 0.0 0.0 ENST00000359454.10,ENST00000432289.5,ENST00000556361.1 NC,NCintron,AntiNCintron protein-coding gene protein-coding gene ENSG00000196553 57231 571676 chr6:44223897-44223932+ NoOverlap chr6 44223897 44223932 + 5.80177508791 12 0.591346862999 2.38537502537 3.41640006254 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;44223896;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A44223897-44223932%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A44223897-44223932&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00978056367562 -0.0160718233375 0.577888946162 44191634 44191669 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;44191633;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A44223897-44223932%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A44191634-44191669&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QAAVTLTSARGRRVDG Same 572703 chr6:44223897-44223932+ 58533 58533 -1302 0 567 44217472 44223932 864 864;7128;57231 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:44217472-44223932&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.694444444444 0.96 -3.107875 0.907 -13.9884 10.880525 0.037279086311 1.00598781197 26350 1251 1251;4456;26350 -10.5563583333 0.4559 -20.1686583333 9.6123 -0.0141282807608 0.677980536473 43691 128 128;7453;43691 0.0 0.0723562410885 chr19:35860297-35860402+ ENST00000371713.5,ENST00000371731.5 UTR5,UTR5intron protein-coding gene protein-coding gene ENSG00000262179 57239 517002 chr17:32224812-32224838+ NoOverlap chr17 32224812 32224838 + 6.17705546485 9 0.948843281368 -0.331822368834 6.50887783368 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;32224811;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A32224812-32224838%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A32224812-32224838&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0671946391087 -0.0160826508451 0.882885235631 30551831 30551857 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;30551830;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A32224812-32224838%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A30551831-30551857&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLLELLRYLYMQSYFINICNSCIR Same 518397 chr17:32224812-32224838+ 56988 56988 251 0 620 32222769 32224838 952 952;57239 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:32222769-32224838&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.296296296296 0.0 1.17851111111 0.9919 -3.5179 4.69641111111 -0.0129466882556 0.61363309146 49156 1984 1984;49156 -6.68818888889 0.7002 -12.6277777778 5.93958888889 -0.0442911669608 0.537941015099 68291 2749 2749;68291 0.0 0.0 ENST00000333942.10,ENST00000578205.5,ENST00000580392.5,ENST00000582586.1 UTR3,NC,CDSintron,NCintron coding exon(s) RHOT1 cassette exon. 57268 584685 chr8:78645271-78645303+ NoOverlap chr8 78645271 78645303 + 3.09121809222 11 0.200445286003 -1.63224532117 4.72346341339 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;78645270;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78645271-78645303%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A78645271-78645303&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0333178180885 -0.0161409562277 0.759553165833 79557506 79557538 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;79557505;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A78645271-78645303%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A79557506-79557538&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QTSLLERCLQEGLR Same 585616 chr8:78645271-78645303+ 54239 54239 3029 0 152 78644641 78649262 182 182;1168;3446;4761;16789;26300;29524;30999;31491;35376;37577;38755;51849;57268 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:78644641-78649262&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.545454545455 0.0 -0.593063636364 0.0306 -1.27958181818 0.686518181818 0.039542431307 0.302676396471 25688 24647 24647;25022;25688;26017;27166;28516;29441;30060;31535;32748;33442;38743;43737;44857 -0.991945454545 0.0691 -5.03623636364 4.04429090909 0.00242552813882 0.490625811103 34156 2313 2313;2928;3831;4402;5151;6371;7765;8644;10862;12609;13170;14289;34156;59180 0.0 0.0 not annotated putative regulatory region 57313 547321 chr21:8446054-8446176- NoOverlap chr21 8446054 8446176 - 1.4515804772 41 0.224824939941 0.546234159753 0.905346317444 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8446053;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446054-8446176-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8446054-8446176&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0129189901289 -0.0162891865458 0.494348733098 118260 118382 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118259;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446054-8446176-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118260-118382&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IAARELLCYVRNPDPEAGRLRMV*RQVPHERAVRDGRGGGR Same 548724 chr21:8446054-8446176- 53136 53136 4177 17 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.658536585366 1.20884520885 -0.420409756098 0.0819 -1.1963195122 0.775909756098 0.0131249168586 0.471434746529 35468 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 0.658626829268 0.1224 -0.21177804878 0.870404878049 -0.0308334724132 0.521858644285 57860 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.226348520638 chr8:144522475-144523409- not annotated SSU-rRNA_Hsa 57322 547319 chr21:8446052-8446216- NoOverlap chr21 8446052 8446216 - 1.75316001217 55 0.217352559701 1.7648222256 -0.0116622134291 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8446051;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446052-8446216-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8446052-8446216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0093028811546 -0.0163116549503 0.407833524867 118258 118422 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118257;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8446052-8446216-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118258-118422&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARTNPCVEG*LSIDRSEGAALLRTKPRPRSRSSTNGLAPGSPRTCGA*RARGRPPFQPRPVSQDEGHSAPDPGPGAR Same 548722 chr21:8446052-8446216- 57056 57056 266 17 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.630303030303 1.16629464286 -0.106145454545 0.0831 0.196078181818 -0.302223636364 0.00449927886722 0.394666738128 39275 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -0.143883636364 0.1236 -0.855623636364 0.71174 -0.0330926976774 0.536636808586 59848 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.167094353629 chr8:144522475-144523409- not annotated SSU-rRNA_Hsa 57352 546356 chr21:8395599-8395880+ NoOverlap chr21 8395599 8395880 + 1.59042872488 94 0.221040243235 1.24777446338 0.3426542615 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395598;282;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395599-8395880%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395599-8395880&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00333977842149 -0.016360200798 0.457723984368 155989 156270 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155988;282;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395599-8395880%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155989-156270&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QEGPPPGASSGAPSPNRPRTTLSGGSLGSCVDEERS*LRELM*IAGHIDHRHFERTCGPGFLPGLRLSERRLPINRPRGCLRAPRGARLGVPSQGPPGALRPPKRRPGGVRPPLAAAPAPSPSPR Same 547769 chr21:8395599-8395880+ 58313 58313 -961 26 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.670212765957 1.07512895268 -5.34562765957 0.2722 -3.79465744681 -1.55097021277 -0.0657312425507 0.171311210924 72874 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -17.9263808511 0.5963 -16.4461882979 -1.48019255319 -0.052231320364 0.431484834164 72118 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0368457653911 chr16:376544-376812- ENST00000613359.1,ENST00000623860.2 NC,NCintron not annotated LSU-rRNA_Hsa 57353 546415 chr21:8439815-8440096+ NoOverlap chr21 8439815 8440096 + 1.59042872488 94 0.221040243235 1.24777446338 0.3426542615 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439814;282;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439815-8440096%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439815-8440096&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00333977842149 -0.016360200798 0.457723984368 155989 156270 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155988;282;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439815-8440096%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155989-156270&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QEGPPPGASSGAPSPNRPRTTLSGGSLGSCVDEERS*LRELM*IAGHIDHRHFERTCGPGFLPGLRLSERRLPINRPRGCLRAPRGARLGVPSQGPPGALRPPKRRPGGVRPPLAAAPAPSPSPR Same 547828 chr21:8439815-8440096+ 58314 58314 -961 26 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.670212765957 1.07512895268 -5.32570106383 0.2969 -4.29919893617 -1.02650212766 -0.0711681429754 0.209814899605 73116 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -17.1781819149 0.5644 -17.3521457447 0.173963829787 -0.0461980204056 0.488970695438 69479 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.014598110761 chr7:44225763-44225913- ENST00000619471.1 NC not annotated LSU-rRNA_Hsa 57364 534736 chr2:110345726-110345779+ NoOverlap chr2 110345726 110345779 + 3.25202781293 18 0.462734077635 -0.895422253344 4.14745006628 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110345725;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110345726-110345779%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110345726-110345779&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00435323914595 -0.016379269364 0.758335221033 111103303 111103356 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111103302;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110345726-110345779%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111103303-111103356&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GITLAEGSPQPRTCEIGTFQPHIWGEK Same 536088 chr2:110345726-110345779+ 54607 54607 2757 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.0 5.43585 0.6207 0.4986 4.93725 0.118387433032 0.721724685142 14085 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 -5.13382777778 0.3067 -6.65988888889 1.52606111111 -0.0299333035727 0.432933002592 57064 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 57374 478909 chr10:113125689-113125751+ NoOverlap chr10 113125689 113125751 + 3.28544765427 21 0.907625514538 0.487138115224 2.79830953905 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113125688;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125689-113125751%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113125689-113125751&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0159291771004 -0.0164145051659 0.617292227888 114885448 114885510 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114885447;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125689-113125751%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114885448-114885510&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFQSYRPKHQSCARWQDNLCWFAELK Same 480810 chr10:113125689-113125751+ 56895 56895 479 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52380952381 0.5 -0.532538095238 0.9875 -1.66430952381 1.13177142857 -0.00176391138298 0.409805188397 42393 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -2.25741904762 0.9227 -3.4506952381 1.19327619048 0.0153705818493 0.444439018855 28601 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 57382 492175 chr12:57610133-57610180+ NoOverlap chr12 57610133 57610180 + 4.15209378302 16 0.439890897993 1.87824372877 2.27385005425 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;57610132;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57610133-57610180%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A57610133-57610180&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00343421044691 -0.0164319482088 0.492920797272 58003916 58003963 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;58003915;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57610133-57610180%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A58003916-58003963&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPQQQLPGRAQASKPPSFSAPSTLK Same 494156 chr12:57610133-57610180+ 57084 57084 298 0 115 57604808 57624781 137 137;276;887;2361;32008;57382;64750;68543 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:57604808-57624781&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.75 0.698181818182 3.48881875 0.9534 -2.2685125 5.75733125 0.187596285384 0.770855389665 9332 192 192;198;227;1040;9332;22257;31301;59213 -3.5561 0.4363 -8.96295 5.40685 0.0132438588217 0.584001235155 29446 667 667;1211;1268;2339;27890;29446;30873;52552 0.0 0.0 ENST00000333972.11 UTR5 coding exon(s) SLC26A10 alternative final exon 57385 508734 chr15:45200419-45200460- NoOverlap chr15 45200419 45200460 - 5.12517137613 14 0.705428942005 3.19756427833 1.9276070978 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;45200418;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45200419-45200460-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A45200419-45200460&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0495405982769 -0.016439142803 0.414878388212 45492617 45492658 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;45492616;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A45200419-45200460-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A45492617-45492658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WLVLCVVAAATSVRIRVTAL Same 510458 chr15:45200419-45200460- 57478 57478 -93 0 1111 45198578 45201222 1685 1685;3658;6770;7314;14365;15805;20741;57385 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:45198578-45201222&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.619047619048 1.25 1.27929285714 0.9942 1.35974285714 -0.08045 -0.00201344216413 0.259644096423 42532 5595 5595;8787;14727;17218;22093;24393;42532;65917 1.28468571429 0.3501 1.3598 -0.0751142857143 -0.0117787158458 0.347361224987 42026 8460 8460;15084;16682;28123;29490;30928;42026;53935 0.0 0.0 ENST00000563103.1,ENST00000290894.12 NC,UTR5intron not annotated 3 tRNAs 57464 547229 chr21:8433811-8434005- NoOverlap chr21 8433811 8434005 - 1.15711232963 65 0.186722303408 -0.236364613359 1.39347694298 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8433810;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8433811-8434005-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8433811-8434005&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0101566248372 -0.0166341393034 0.607790826962 149985 150179 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;149984;195;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8433811-8434005-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A149985-150179&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ANPPRGQHDGPAGRHPHRRGGGPPASRQPLEATARAVCRVRGPRRPAPRRRRRRAGRRGRAGVRTPR Same 548632 chr21:8433811-8434005- 48755 48755 8709 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.794871794872 0.974350433045 -1.95802 0.2642 -1.90207846154 -0.0559415384615 -0.0343095278435 0.37663566771 63251 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 1.26537538462 0.2863 1.04991692308 0.215458461538 0.0606544444986 0.523178633463 16705 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.131593661689 chr11:72814446-72814563+ not annotated SSU-rRNA_Hsa 57510 511812 chr16:54928778-54928900+ NoOverlap chr16 54928778 54928900 + 2.3522170942 41 0.455906078859 1.13864634749 1.21357074671 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54928777;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54928778-54928900%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54928778-54928900&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00819434164349 -0.0167449463983 0.537401861488 54962690 54962812 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54962689;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54928778-54928900%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54962690-54962812&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPGPGGGSPLLRRAGARAADAPSWLARAPGGRRARAVTDR*RQGLRLRRAEPGAGAEGPWGR Same 513453 chr16:54928778-54928900+ 57655 57655 -145 11 496 54928752 54938880 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.861788617886 1.28125 -6.15950487805 0.5932 -5.37246341463 -0.787041463415 -0.00550388885082 0.263595418134 44426 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -6.83926585366 0.3006 -7.70888536585 0.869619512195 -0.0468897843439 0.500839977975 69896 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.13430565732 chr5:3596106-3596381+ ENST00000557792.1 AntiNC not annotated putative regulatory region 57601 476483 chr1:244730511-244730552- NoOverlap chr1 244730511 244730552 - 4.5069356284 14 0.428380690798 2.93797157918 1.56896404922 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244730510;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244730511-244730552-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244730511-244730552&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00331110771374 -0.0169840063881 0.376123796737 244893813 244893854 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244893812;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244730511-244730552-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244893813-244893854&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QGGPGARPVGPLEPAEAASEAGDVEAALPAAQGAAGPAGGDPAAGAGPRAGRPRGRGRTPEQRPR Same 478377 chr1:244730511-244730552- 58361 58361 -760 0 1209 244730511 244730827 1827 1827;6442;39659;57601 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244730511-244730827&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 0.960784313725 -3.26113571429 0.6093 -3.36585714286 0.104721428571 -0.0137821790863 0.285890408094 49722 1411 1411;4590;49722;61439 -2.06167142857 0.389 -3.24112142857 1.17945 -0.0208311333687 0.396974907122 48762 2751 2751;4783;48536;48762 0.0 0.0541005894815 chr19:48194653-48196827+ protein-coding gene protein coding gene ENSG00000284188 57642 481961 chr10:102409182-102409211- NoOverlap chr10 102409182 102409211 - 6.33536005821 10 0.410600442512 4.03484001756 2.30052004065 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102409181;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102409182-102409211-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102409182-102409211&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0229390421722 -0.0170795925225 0.398503445641 104168939 104168968 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104168938;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102409182-102409211-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104168939-104168968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGPGRAARAGCR Same 483878 chr10:102409182-102409211- 60895 60895 -3253 0 470 102395633 102432561 680 680;6932;11855;22696;25308;48284;57642;69925;70124;70146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102395633-102432561&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.866666666667 1.2426035503 2.97094 0.4601 3.54083 -0.56989 -0.0115162905638 0.186269139589 48132 2246 2246;9900;30034;37715;42789;48132;52915;53220;64824;73530 3.67914 0.2684 5.04632 -1.36718 -0.0180428533824 0.265094135683 46589 715 715;21243;24877;42637;43017;45832;46589;56731;57300;70842 0.0 0.0 ENST00000461698.5,ENST00000020673.5,ENST00000488194.1 NC,CDSintron,NCintron coding exon(s) PSD alternative first exon 57650 724186 chr8:144462230-144462280+ Extension chr8 144462230 144462280 + 2.7288881961 17 0.304247842419 -0.0759470673168 2.80483526342 chr8:144462230-144462457+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144462229;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144462230-144462280%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144462230-144462280&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0385994835704 -0.0171006520435 0.587583174966 145687613 145687663 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145687612;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144462230-144462280%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145687613-145687663&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSWGPAAGAAAPGWAGSGSAGGPTWYTEALGR Same 724784 chr8:144462230-144462280+ 53081 53081 4569 0 455 144462230 144473371 652 652;52414;53196;56283;57650;72805 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144462230-144473371&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.882352941176 0.734567901235 -1.20947647059 0.4757 -1.21018823529 0.000711764705882 -0.0233523125136 0.28998009069 56412 886 886;41693;42652;43967;45511;56412 -7.10534705882 0.3544 -6.17448823529 -0.930858823529 -0.0352302776402 0.324704732335 61641 1535 1535;18941;28339;51248;53436;61641 0.0 0.122257921556 chr16:166268-166472+ ENST00000438911.6,ENST00000528558.1 AntiCDSintron,AntiNCintron coding exon(s) KIFC2 frame corrected in final exon 57664 476952 chr10:23173409-23173438+ NoOverlap chr10 23173409 23173438 + 6.01797994971 10 0.756531624323 0.139539957047 5.87843999267 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;23173408;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23173409-23173438%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A23173409-23173438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0227636339309 -0.0171427946884 0.837616039954 23462338 23462367 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;23462337;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23173409-23173438%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A23462338-23462367&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASPPGRPGAPDTNSSR Same 478847 chr10:23173409-23173438+ 56929 56929 735 0 873 23173215 23174753 1346 1346;12304;15950;27589;28990;57664;61491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:23173215-23174753&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 1.51515151515 2.31315 0.8826 -2.02029 4.33344 -0.0122373953384 0.591982316603 48646 13233 13233;19886;24016;28278;48646;49514;73112 -2.1625 0.4688 -2.92714 0.76464 -0.0333815624649 0.350258618499 60100 17548 17548;26780;29885;33897;60100;60114;62222 0.0 0.0897926348872 chr20:59191020-59194757+ not annotated putative regulatory region 57720 522790 chr17:64501286-64501372- NoOverlap chr17 64501286 64501372 - 2.61815861266 29 0.955995085543 0.723151704361 1.8950069083 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;64501285;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64501286-64501372-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A64501286-64501372&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0293368175097 -0.017312098351 0.563058869222 62497404 62497490 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;62497403;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64501286-64501372-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A62497404-62497490&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CFESSSLTYTVVVMSRPARERHILK*ILASWKRLPRRDTVHK Same 524224 chr17:64501286-64501372- 57678 57678 42 14 785 64497052 64506947 1219 1219;1314;11116;12743;15272;20390;22680;57720;59551 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:64497052-64506947&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.528735632184 0.659090909091 -0.929782758621 0.9433 -0.755324137931 -0.17445862069 -0.0308373109541 0.337749622089 61045 3317 3317;9751;12985;29872;53023;54218;61045;63372;66796 -11.8978517241 0.8903 -9.71442758621 -2.18342413793 -0.0573737809702 0.315581380071 73201 5759 5759;11482;17125;20897;41797;70711;70752;72223;73201 0.0 0.0 ENST00000580026.5,ENST00000225792.9,ENST00000540698.6 NC,CDSintron,NCintron coding exon(s) DDX5 alternative first exon 57752 539157 chr2:71578835-71578879- NoOverlap chr2 71578835 71578879 - 4.74634004682 15 0.879316395819 2.77568667332 1.9706533735 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;71578834;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A71578835-71578879-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A71578835-71578879&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0780400451825 -0.0173949387925 0.435779907445 71805965 71806009 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;71805964;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A71578835-71578879-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A71805965-71806009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPGLAPAEGFRERLPVLMSR Same 540535 chr2:71578835-71578879- 55770 55770 1982 0 1338 71578835 71579031 2011 2011;57752;68761 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:71578835-71579031&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.644444444444 0.0 4.59916 0.8856 3.83306 0.7661 0.0564870898079 0.327281121934 21858 Best 21858 21858;50833;72581 -1.06917333333 0.3939 1.34756666667 -2.41674 -0.0281105825375 0.266048336332 55413 39057 39057;55413;67008 0.0 0.0 ENST00000258104.7,ENST00000475076.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 57807 512300 chr16:72427940-72427978+ NoOverlap chr16 72427940 72427978 + 4.62486924575 13 0.947081712062 -0.643915286431 5.26878453218 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72427939;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427940-72427978%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72427940-72427978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0567949080125 -0.0175455738208 0.823121304212 72461839 72461877 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72461838;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427940-72427978%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72461839-72461877&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WVMCPCVFPSFSLSLSLPTAMGFHNSAIKVDGREGLLHR Same 513944 chr16:72427940-72427978+ 60648 60648 -2841 0 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.506493506494 -0.311615384615 0.9998 -3.22150769231 2.90989230769 -0.0103380554011 0.503136002105 47336 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -7.87570769231 0.7652 -14.5097923077 6.63408461538 -0.0267066157009 0.592450744729 54104 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000564508.2,ENST00000561611.2 NC,AntiNCintron not annotated potentially spurious 57826 560725 chr4:185071430-185071468+ NoOverlap chr4 185071430 185071468 + 4.67849230766 13 0.906767376211 -0.32275382372 5.00124613138 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;185071429;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A185071430-185071468%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A185071430-185071468&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0337903849945 -0.0176046516665 0.794386969401 185992584 185992622 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;185992583;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A185071430-185071468%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A185992584-185992622&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VVIWMLEKR*MGDIGR Same 561713 chr4:185071430-185071468+ 57102 57102 724 3 3332 185071430 185071645 4626 4626;13043;31204;57826;61815 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:185071430-185071645&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.461538461538 0.0 -3.44755384615 0.9993 -4.60495384615 1.1574 -0.0477199280245 0.361984527937 70306 5256 5256;7014;8229;65721;70306 -8.20826153846 0.8765 -12.5331461538 4.32488461538 -0.0421786780406 0.498548158107 66794 26011 26011;49583;61981;65284;66794 0.0 0.0 ENST00000509017.5 NCintron not annotated potentially spurious 57864 535641 chr2:163348731-163348757+ NoOverlap chr2 163348731 163348757 + 7.18541117509 9 0.929386333003 3.23066658444 3.95474459065 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;163348730;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A163348731-163348757%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A163348731-163348757&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.040116241301 -0.0177519247486 0.583844759442 164205241 164205267 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;164205240;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A163348731-163348757%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A164205241-164205267&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGSWGPSCLFSR Same 537004 chr2:163348731-163348757+ 55644 55644 2220 0 1222 163348314 163348757 1845 1845;57864;72442 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:163348314-163348757&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.0 -4.78442222222 0.9387 -0.929 -3.85542222222 0.0256111983341 0.0571633701849 30400 2837 2837;30400;47745 -7.52892222222 0.4066 -8.21552222222 0.6866 -0.0258721936832 0.331782766032 53343 5420 5420;52692;53343 0.0 0.0 not annotated putative regulatory region 57951 485755 chr11:94512607-94512645+ NoOverlap chr11 94512607 94512645 + 5.20409987007 13 0.572537281899 1.30598469881 3.89811517126 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;94512606;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A94512607-94512645%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A94512607-94512645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00217948408211 -0.0179528371467 0.659140316239 94245773 94245811 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;94245772;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A94512607-94512645%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A94245773-94245811&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEEQPPPPAGLGCGARGEPGR Same 487713 chr11:94512607-94512645+ 59076 59076 -1125 0 131 94512607 94528205 158 158;244;57951 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:94512607-94528205&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.846153846154 0.77380952381 8.54876153846 0.8007 4.33548461538 4.21327692308 0.164449319016 0.591358901761 10637 888 888;996;10637 9.50696153846 0.3093 5.79006923077 3.71689230769 0.0825893953453 0.478757219295 13464 1869 1869;1960;13464 0.0 0.0 ENST00000542198.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 58078 478056 chr10:89787083-89787109+ NoOverlap chr10 89787083 89787109 + 7.03254443407 9 0.254342463315 -4.20988870992 11.242433144 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;89787082;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A89787083-89787109%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A89787083-89787109&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0203105091871 -0.0182680664229 1.04069992838 91546840 91546866 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;91546839;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A89787083-89787109%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A91546840-91546866&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELQQAFILNPTPDSLPLISLLLAEG Same 479950 chr10:89787083-89787109+ 54517 54517 3561 0 729 89786640 89787109 1123 1123;1250;58078 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:89786640-89787109&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.37037037037 0.0 -3.53034444444 0.0615 -3.64868888889 0.118344444444 0.0422109130625 0.263574515065 24953 Best 24953 24953;41255;49582 13.4398666667 0.5463 -5.925 19.3648666667 0.487336129072 0.968378399624 3578 1620 1620;1993;3578 0.0 0.794171542516 chrM:12337-14148+ pseudogene NADH dehydrogenase subunit 5 pseudogene (ENSG00000283402) 58180 588146 chr8:143733703-143733927- NoOverlap chr8 143733703 143733927 - 1.51806396425 75 0.216729991608 1.33395865222 0.18410531203 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143733702;225;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143733703-143733927-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143733703-143733927&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00442916602481 -0.0185167152059 0.443773939018 144815873 144816097 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144815872;225;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143733703-143733927-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144815873-144816097&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGAGGGRGAQECGRAAGGAAPPPGAARAGRRQERRAGRGRARESGRAGRGREWLPDRPDREAAGRRSAPAAPVPRPR Same 589091 chr8:143733703-143733927- 58797 58797 -617 0 276 143733703 143738234 361 361;376;47468;58180;61062 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143733703-143738234&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.831111111111 0.906827880512 -0.965216 0.3947 -0.907325333333 -0.0578906666667 -0.0181993078487 0.387452854332 52884 308 308;828;30909;52884;63830 -5.766928 0.281 -6.02217733333 0.255249333333 -0.0201474715522 0.506800806846 48220 720 720;3471;45407;48220;48572 0.0 0.247907402706 chr22:39995043-39995531+ ENST00000388913.3 UTR5 coding exon(s) FAM83H 5' coding extension. 58234 501031 chr14:28768359-28768469+ NoOverlap chr14 28768359 28768469 + 1.49023248547 37 0.628464261927 -1.37876760288 2.86900008835 ENST00000313071.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28768358;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28768359-28768469%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28768359-28768469&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.144010250424 -0.0186529592141 0.739188058585 29237565 29237675 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29237564;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28768359-28768469%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29237565-29237675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QRPERGPAGQRGDPVRHAPPHGRRASRLGALRPVGALLWDLLPQPLLR Same 502923 chr14:28768359-28768469+ 63541 63541 -5307 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.747747747748 0.978260869565 -8.29870810811 0.9609 -9.2900972973 0.991389189189 -0.116790067456 0.389486600662 73775 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -34.3499540541 0.9796 -39.0802540541 4.7303 -0.0207959571944 0.331804460463 48738 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.163632398289 chr16:86567336-86568841+ ENST00000313071.6 CDS not annotated putative regulatory region 58239 547232 chr21:8434793-8434963- NoOverlap chr21 8434793 8434963 - 1.23550000996 57 0.206512657626 -0.218759655266 1.45425966523 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8434792;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8434793-8434963-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8434793-8434963&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00808955938966 -0.0186658636672 0.610817225562 150967 151137 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;150966;171;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8434793-8434963-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A150967-151137&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGQSAGRAHPPPAGRRVPTRWERRARPGGILPRLGRGRRGPQ*ATSRTRPPPRWPAEPSLLPPNPVEGEAEEGPLR Same 548635 chr21:8434793-8434963- 50888 50888 7351 16 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.80701754386 1.04952380952 -1.16913684211 0.2843 -5.12173157895 3.95259473684 0.0224743376468 0.771414254045 31600 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -0.558880701754 0.2917 -5.65638245614 5.09750175439 0.117665358526 0.725863654434 10015 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.136971467313 chr9:127744564-127745099- not annotated SSU-rRNA_Hsa 58279 546388 chr21:8401516-8401716+ NoOverlap chr21 8401516 8401716 + 1.36982386459 67 0.208171092352 0.607940302689 0.761883561903 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8401515;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401516-8401716%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8401516-8401716&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00534506518167 -0.0187945943114 0.523072533074 117953 118153 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;117952;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401516-8401716%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A117953-118153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEPQVQTFGVCAWLRSQWGEATICGIMTERL*VRIPPRRNDTAAPRSLGWPRIAGPPPVPAGGPPPPSTRPAR Same 547801 chr21:8401516-8401716+ 54900 54900 3379 32 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.65671641791 0.830769230769 0.204194029851 0.0846 -0.350894029851 0.555088059701 0.00497690569172 0.479814258799 39039 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -0.275658208955 0.0748 -0.848070149254 0.572411940299 -0.036281023539 0.53514531342 62453 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.219634162681 chr19:44649809-44650105+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 58328 466592 chr1:110230515-110230556+ NoOverlap chr1 110230515 110230556 + 4.73249288116 14 0.733994920926 1.0391928809 3.69330000026 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;110230514;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A110230515-110230556%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A110230515-110230556&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0132703440683 -0.0189419479561 0.650193718809 110773137 110773178 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;110773136;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A110230515-110230556%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A110773137-110773178&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPRPLFLWQPSSCQEPKFPR Same 468452 chr1:110230515-110230556+ 58362 58362 -34 0 138 110228004 110230556 166 166;58328;63100;67233 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:110228004-110230556&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.595238095238 0.269230769231 2.48545714286 0.9881 2.95388571429 -0.468428571429 0.0177240230612 0.226659612172 33496 112 112;26525;33496;69315 0.530742857143 0.3795 0.04935 0.481392857143 -0.011003777867 0.369689110465 41544 695 695;10859;41544;59966 0.0 0.0 ENST00000369787.7,ENST00000412512.2 CDSintron,NCintron coding exon(s) KCNC4 alternative final exon 58454 586811 chr8:60792954-60793118- NoOverlap chr8 60792954 60793118 - 1.50311457677 55 1.0 -0.302298171412 1.80541274819 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;60792953;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A60792954-60793118-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A60792954-60793118&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0200724154535 -0.019312079941 0.65784690845 61705513 61705677 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;61705512;165;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A60792954-60793118-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A61705513-61705677&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLPYYEVPFPAFISALTATNYTILQLNTGPLSFHLHAKSNQITLVTSGHMTSTCSFGWMPLTKAICFPQSAFKHSQHLR Same 587752 chr8:60792954-60793118- 51989 51989 6465 0 615 60792790 60793155 943 943;7038;18295;58454 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:60792790-60793155&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.521212121212 0.29945553539 -0.435441818182 0.9999 -2.0942 1.65875818182 0.140744568627 0.577037997024 12228 4570 4570;12228;13553;25144 -2.4493 0.8508 -5.92058727273 3.47128727273 0.177273266846 0.651175184011 6888 Best 6888 6888;10907;32971;41586 0.0 0.0 ENST00000423902.6,ENST00000527900.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 58469 482196 chr10:113119982-113120011- NoOverlap chr10 113119982 113120011 - 5.50744995177 10 0.871564812696 -0.886950087547 6.39440003932 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113119981;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119982-113120011-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113119982-113120011&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0714062477225 -0.0193593831586 0.891078611005 114879741 114879770 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114879740;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119982-113120011-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114879741-114879770&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HFKWRERKKKR Same 484120 chr10:113119982-113120011- 54844 54844 3625 0 719 113118964 113126911 1110 1110;6516;16816;37245;38490;54651;58469;62875;67669;70173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118964-113126911&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 1.5 -1.82537 0.9967 -7.16523 5.33986 -0.0386139338191 0.676492175692 65767 4406 4406;18572;33940;40718;63931;65767;72176;72358;72407;73429 -8.93582 0.907 -11.762 2.82618 -0.0526035338868 0.413957971176 72240 6655 6655;10141;25415;26332;35901;38764;51629;51984;53928;72240 0.0 0.0 ENST00000346198.5 AntiCDSintron not annotated putative regulatory region 58489 481113 chr10:75401663-75401698- NoOverlap chr10 75401663 75401698 - 5.16480810444 12 0.813584344244 0.375350038211 4.78945806623 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75401662;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401663-75401698-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75401663-75401698&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00584835342782 -0.0193997315331 0.755002684166 77161421 77161456 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77161420;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401663-75401698-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77161421-77161456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ERSAGEQPEADTASRPALPQSSR Same 483027 chr10:75401663-75401698- 55848 55848 2641 0 3027 75401238 75417825 4228 4228;6685;19248;23964;26231;42519;58489;66465;71052;72621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75401238-75417825&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.805555555556 1.03846153846 1.86995833333 0.8756 -1.82728333333 3.69724166667 0.00119531715591 0.559717151178 40902 9680 9680;11699;11870;23869;27311;40902;43730;53944;63556;72593 -1.515225 0.5485 -8.60816666667 7.09294166667 0.0335141098757 0.624829721416 22714 8483 8483;11906;14750;22472;22714;29979;35309;42843;42916;72930 0.0 0.0 ENST00000372524.4,ENST00000466942.2 UTR5,AntiNC not annotated putative regulatory region 58515 525515 chr18:26546760-26546861- NoOverlap chr18 26546760 26546861 - 2.4836176086 34 0.893382072444 1.45291165043 1.03070595817 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26546759;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26546760-26546861-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26546760-26546861&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0901605573266 -0.0194683771165 0.47681549915 24126724 24126825 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;24126723;102;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26546760-26546861-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A24126724-24126825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DFVSAPRSLWMRWWWFP*NTTPCLFFQKPMGTEAPILPQ Same 526958 chr18:26546760-26546861- 56889 56889 1626 13 513 26546760 26549891 768 768;8399;25501;30998;36827;39211;40894;58515;70807;71876 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26546760-26549891&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.578431372549 0.475524475524 -1.76716764706 0.989 -2.01033235294 0.243164705882 -0.0337597344239 0.386196456106 62885 2222 2222;11084;12141;14614;15029;28171;62885;67707;71661;73517 -12.9292617647 0.696 -11.6008823529 -1.32837941176 -0.0650590140429 0.359990978432 73633 2942 2942;16429;16512;26392;33196;52681;55735;64991;73449;73633 0.0 0.0 ENST00000578973.1,ENST00000580191.5,ENST00000317932.11 UTR5,CDSintron,UTR5intron coding exon(s) KCTD1 5' extension 58626 547175 chr21:8395182-8395328- NoOverlap chr21 8395182 8395328 - 1.02836327042 49 0.206340279302 -0.188920465051 1.21728373547 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395181;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395182-8395328-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395182-8395328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.014967479687 -0.0197176497103 0.561883251011 155571 155717 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155570;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395182-8395328-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155571-155717&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QARDGRRVKPPPDGRRGGGGGAAPAGERSPRWRRGRGRAPPDGTPPRAHHRPRPTGGR Same 548580 chr21:8395182-8395328- 52756 52756 5870 0 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.87074829932 1.04102564103 -0.227704081633 0.2222 -1.81311632653 1.5854122449 0.00472361634431 0.568286361785 39159 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 3.0656244898 0.313 -2.33483877551 5.40046326531 0.228437437972 0.735033354171 5577 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.121642087396 chr3:9906961-9907100+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 58627 547268 chr21:8439397-8439543- NoOverlap chr21 8439397 8439543 - 1.02836327042 49 0.206340279302 -0.188920465051 1.21728373547 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439396;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439397-8439543-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439397-8439543&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.014967479687 -0.0197176497103 0.561883251011 155571 155717 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155570;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439397-8439543-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155571-155717&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QARDGRRVKPPPDGRRGGGGGAAPAGERSPRWRRGRGRAPPDGTPPRAHHRPRPTGGR Same 548671 chr21:8439397-8439543- 52757 52757 5870 0 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.87074829932 1.04102564103 0.923828571429 0.2464 -2.97498367347 3.8988122449 0.056812743107 0.798003784033 21795 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 2.92860612245 0.3263 -1.45025102041 4.37885714286 0.204152387171 0.692457723738 6123 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.155009286125 chr16:88646520-88646603- not annotated SSU-rRNA_Hsa 58666 537369 chr2:240560378-240560404+ NoOverlap chr2 240560378 240560404 + 3.85727783044 9 0.208144926799 -0.682400114006 4.53967794445 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;240560377;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240560378-240560404%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A240560378-240560404&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0197794451595 -0.0198280045581 0.709350554765 241499795 241499821 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;241499794;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240560378-240560404%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A241499795-241499821&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATDASPVPQAAGAGRTAPGDR Same 538740 chr2:240560378-240560404+ 57435 57435 1231 0 187 240560378 240572566 225 225;4611;43454;53343;54932;58666;60196 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:240560378-240572566&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.888888888889 1.13445378151 -3.94654444444 0.3679 -4.18571111111 0.239166666667 0.0284100656175 0.275374497635 29313 635 635;2542;29313;56709;59851;60661;63450 1.27388888889 0.2455 -3.71192222222 4.98581111111 -0.0178626194918 0.51086092322 46446 1672 1672;2162;18782;46446;66739;70450;73682 0.0 0.179156607263 chr9:136992444-136992562+ ENST00000343217.6,ENST00000403283.5,ENST00000405002.5,ENST00000418505.3 UTR5,AntiCDSintron,AntiUTR5intron,AntiNCintron coding exon(s) RNPEPL1 extended 5' 58708 485681 chr11:85664647-85664706+ NoOverlap chr11 85664647 85664706 + 3.55717510283 20 0.64563744564 1.43008013964 2.12709496319 ENST00000527447.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;85664646;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85664647-85664706%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A85664647-85664706&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0111023940009 -0.0199289287324 0.517332147035 85375691 85375750 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;85375690;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85664647-85664706%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A85375691-85375750&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARARPRRRGSPSRLPTLLRRQTAACGR Same 487640 chr11:85664647-85664706+ 60743 60743 -2035 0 640 85662411 85665175 984 984;2049;2813;3027;18118;20011;21291;24329;58708;71875 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:85662411-85665175&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.75 1.44230769231 -0.220605 0.7949 -4.622895 4.40229 0.0267301223078 0.69064388125 29965 2447 2447;10858;11498;16615;27666;29218;29965;35821;36919;48364 -2.452175 0.4882 -9.43565 6.983475 0.0873087488102 0.681456508385 12876 5807 5807;12876;35731;45741;53410;58313;62812;66127;69825;72999 0.0 0.24182055232 chr7:72941837-72943522+ ENST00000527447.1,ENST00000490820.2,ENST00000534224.1,ENST00000531515.5 AntiCDS,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 58712 531216 chr19:40467081-40467116- NoOverlap chr19 40467081 40467116 - 5.40770835926 12 0.438391699092 3.12894162287 2.27876673639 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;40467080;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40467081-40467116-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A40467081-40467116&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.012317478617 -0.0199374611371 0.434326404623 40972988 40973023 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;40972987;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A40467081-40467116-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A40972988-40973023&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SARPRDPLPPAVPAPR Same 532687 chr19:40467081-40467116- 60011 60011 -1299 0 555 40458139 40467303 841 841;9776;45931;47832;50410;51155;58712 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:40458139-40467303&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.916666666667 0.939130434783 3.74583333333 0.5857 2.381425 1.36440833333 -0.00974634101007 0.352220026445 46951 868 868;6935;16896;20165;31195;46951;56302 1.46919166667 0.2848 -0.5227 1.99189166667 -0.0123903238117 0.414290916241 42442 3101 3101;8091;23506;32765;33228;42442;52654 0.0 0.0 ENST00000352632.7 AntiUTR5intron coding exon(s) BLVRB retained intron CDS 58780 546392 chr21:8401746-8401868+ NoOverlap chr21 8401746 8401868 + 1.82099758416 41 0.248575793609 1.86502680764 -0.0440292234828 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8401745;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401746-8401868%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8401746-8401868&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00438108789252 -0.0201428522196 0.365722076647 118183 118305 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118182;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401746-8401868%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118183-118305&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARAPPRAGTGVRCGVPFVLGNGARPERRPPPRPSRTARSWGTWR Same 547805 chr21:8401746-8401868+ 57217 57217 1563 0 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.79674796748 1.127030404 -0.791709756098 0.1116 -0.00586829268293 -0.785841463415 0.00341917089672 0.323584582075 39786 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -1.86231707317 0.1195 -0.600156097561 -1.26216097561 -0.0515481039291 0.425415005082 71902 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.376970802622 chr19:44649809-44650105+ ENST00000617236.1,ENST00000623860.2 NC,NCintron not annotated LSU-rRNA_Hsa 58781 475811 chr1:213987582-213987650- NoOverlap chr1 213987582 213987650 - 2.88905215458 23 0.470933885312 1.82639995995 1.06265219463 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;213987581;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213987582-213987650-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A213987582-213987650&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00266878841603 -0.0201446604389 0.406445421662 214160925 214160993 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214160924;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213987582-213987650-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214160925-214160993&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AWAGASHLRALCKAGDGASGARLTLALPGR Same 477701 chr1:213987582-213987650- 58406 58406 375 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.695652173913 1.078125 3.12353913043 0.745 -0.303404347826 3.42694347826 0.103621622428 0.639631006249 15460 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 1.13326521739 0.4033 -1.62103913043 2.75430434783 0.0679057896738 0.526324045438 15504 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000625209.2,ENST00000433082.6,ENST00000471129.1 NC,NCintron,AntiUTR5intron not annotated potentially spurious 58822 514641 chr16:67226972-67227004- NoOverlap chr16 67226972 67227004 - 6.24836371162 11 0.944197756924 3.69442733851 2.5539363731 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;67226971;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A67226972-67227004-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A67226972-67227004&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0638741696301 -0.0202646366288 0.445799881744 67260875 67260907 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;67260874;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A67226972-67227004-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A67260875-67260907&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DAMAESLPLEVR Same 516293 chr16:67226972-67227004- 58824 58824 -2 0 510 67223826 67227004 758 758;58822 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:67223826-67227004&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.69696969697 0.825 4.46122727273 0.9911 1.26915454545 3.19207272727 0.0959945437439 0.497688172627 16307 2254 2254;16307 -0.0103636363636 0.4245 -2.87757272727 2.86720909091 -0.0116929118386 0.442341962297 41965 2117 2117;41965 0.0 0.0 ENST00000409509.5,ENST00000462169.5 UTR5,NC redundant PhyloCSF signals are accounted for elsewhere on the list 58910 469168 chr1:222815026-222815061+ NoOverlap chr1 222815026 222815061 + 5.72848333915 12 0.742530708782 3.03896659116 2.68951674799 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;222815025;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A222815026-222815061%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A222815026-222815061&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0436785454334 -0.0205098135194 0.483746829939 222988368 222988403 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;222988367;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A222815026-222815061%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A222988368-222988403&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DADRARRKPGSGPASESPDWR Same 471047 chr1:222815026-222815061+ 57706 57706 1204 0 25181 222815026 222815061 Best 58910 58910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:222815026-222815061&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.805555555556 0.865384615385 1.8195 0.7734 -4.85484166667 6.67434166667 0.03361972933 0.799236458824 27420 Best 27420 27420 0.792041666667 0.2862 -5.8199 6.61194166667 0.0117607097724 0.606100393947 30008 Best 30008 30008 0.0 0.162965120055 chr14:24076879-24077012+ ENST00000450784.5 NC not annotated potentially spurious 58915 585818 chr8:10483193-10483234- NoOverlap chr8 10483193 10483234 - 4.04215012491 14 0.37176100012 -1.60926438229 5.6514145072 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;10483192;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10483193-10483234-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A10483193-10483234&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0056082245965 -0.0205213430639 0.874487546231 10340703 10340744 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;10340702;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A10483193-10483234-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A10340703-10340744&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SQTGLSLPAQVLSEHGFSLVTSDTSQEEQTSSPYSR Same 586755 chr8:10483193-10483234- 51702 51702 7213 0 1390 10474912 10483234 2083 2083;5461;58915 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:10474912-10483234&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.0 9.54970714286 0.8643 -2.61913571429 12.1688428571 0.449393883808 1.03524268218 3519 1396 1396;2872;3519 15.9006928571 0.3631 -1.36996428571 17.2706571429 0.466283877497 0.946662881936 3663 900 900;1656;3663 0.420537601021 chr8:10428148-10428312+ 0.496552828289 chr8:10428148-10428312+ ENST00000523024.1 NC redundant PhyloCSF signals are accounted for elsewhere on the list 58923 577714 chr7:27172889-27172930+ NoOverlap chr7 27172889 27172930 + 4.57257864092 14 0.804898146029 0.557714253664 4.01486438726 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27172888;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27172889-27172930%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27172889-27172930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00502368070254 -0.0205381662657 0.691928560334 27212508 27212549 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27212507;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27172889-27172930%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27212508-27212549&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TRTSPVNGLIYWRWR Same 578753 chr7:27172889-27172930+ 56992 56992 1931 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.547619047619 1.66666666667 -2.26212142857 0.9927 -3.59515 1.33302857143 -0.0439902413828 0.379474006538 68716 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -7.46315 0.5491 -6.25002142857 -1.21312857143 -0.0401138912372 0.295535653597 65338 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000524368.1,ENST00000283921.4,ENST00000465941.1 AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 58930 528147 chr19:35408034-35408066+ NoOverlap chr19 35408034 35408066 + 6.28392733227 11 0.653528648814 3.33427262509 2.94965470718 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35408033;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35408034-35408066%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35408034-35408066&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0222750188793 -0.0205462394801 0.497074832336 35898936 35898968 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;35898935;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35408034-35408066%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A35898936-35898968&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAAVTLFNFLVCLDPVLCLPWWVPPVEESNWWAGAVLFSALDAALTP Same 529595 chr19:35408034-35408066+ 59210 59210 -280 0 3634 35407926 35408066 5047 5047;58930 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35407926-35408066&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575757575758 0.75 23.4630363636 0.9695 8.05249090909 15.4105454545 0.836804046383 0.954212452094 1527 1413 1413;1527 30.6025090909 0.5321 7.15067272727 23.4518363636 0.783111043395 0.981338382231 2537 2059 2059;2537 0.324441638968 chr19:35449715-35450707+ 0.566988147731 chr19:35449715-35450707+ ENST00000536898.5,ENST00000441942.6 NC,NCintron pseudogene free fatty acid receptor 2 (FFAR2) unprocessed pseudogene (ENSG00000283479) 59132 574596 chr6:34237947-34238009- NoOverlap chr6 34237947 34238009 - 2.99438097363 21 0.466912264257 1.60279051179 1.39159046184 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34237946;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237947-34238009-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34237947-34238009&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00421266227201 -0.0211949880812 0.433225209791 34205724 34205786 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34205723;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237947-34238009-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34205724-34205786&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FQQSPAKQRNQFVGAEGRPGPWG Same 575628 chr6:34237947-34238009- 58518 58518 614 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.714285714286 0.382591093117 3.15408571429 0.8985 1.76821904762 1.38586666667 0.090606348209 0.437080972622 16960 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -2.39037142857 0.4002 -2.81495238095 0.424580952381 -0.0132650223175 0.412444303007 43044 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0327659378383 chr10:100984034-100984074- ENST00000311487.9,ENST00000478214.1 AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000186577 59171 530317 chr19:15432547-15432762- NoOverlap chr19 15432547 15432762 - 1.36511667652 72 0.257386426252 0.15486526572 1.2102514108 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15432546;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432547-15432762-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15432547-15432762&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0107196483485 -0.0213038438778 0.584730133145 15543358 15543573 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15543357;216;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432547-15432762-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15543358-15543573&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSALSCSRLGRPPRVRRSQDGRLHRPVPSDKSGEQGGGGAARGGRPGARARGGAPAQPPEPGPRGTPRAAAAAPTPAAAATTTATATAAAGR Same 531780 chr19:15432547-15432762- 52561 52561 6610 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.851851851852 0.977142857143 -0.670019444444 0.41 -0.0639027777778 -0.606116666667 -0.0216414665156 0.346229396243 55256 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -6.1543625 0.3007 -5.66301944444 -0.491343055556 -0.020813254259 0.474003003094 48751 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.110496335444 chr19:58350370-58350651- ENST00000599686.3,ENST00000263381.11,ENST00000599910.6 UTR5,CDSintron,UTR5intron coding exon(s) WIZ 2 cassette exons 59194 472689 chr1:62999306-62999332- NoOverlap chr1 62999306 62999332 - 7.2678889864 9 0.939604791333 3.92857787344 3.33931111296 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;62999305;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62999306-62999332-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A62999306-62999332&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0458359000946 -0.0213670626182 0.503081188762 63464977 63465003 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;63464976;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62999306-62999332-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A63464977-63465003&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LQFQFHLQPSNGSWWR Same 474568 chr1:62999306-62999332- 57888 57888 1306 0 668 62997933 63000329 1026 1026;13743;18049;27623;33268;34189;37177;59194;68808 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:62997933-63000329&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.75 -0.3365 1.0 -1.14172222222 0.805222222222 -0.04338610056 0.295667829496 68420 6220 6220;8200;13946;16945;28973;32781;63612;68420;69109 -1.87993333333 0.9363 -6.27052222222 4.39058888889 -0.0170369571273 0.486820538669 45828 6223 6223;11538;12991;22844;28460;29330;40736;45828;71146 0.0 0.0 not annotated putative regulatory region 59332 488053 chr11:57638680-57638739- NoOverlap chr11 57638680 57638739 - 3.25257511549 20 0.502401770047 2.27128999978 0.981285115704 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;57638679;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57638680-57638739-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A57638680-57638739&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00129584821108 -0.0218136460611 0.36920078472 57406153 57406212 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;57406152;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A57638680-57638739-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A57406153-57406212&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQTVPLPSPRENKTENRCRYPSGSSR Same 490030 chr11:57638680-57638739- 59299 59299 33 0 403 57638680 57647203 565 565;59332 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:57638680-57647203&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 1.35746606335 5.284555 0.7972 -0.64349 5.928045 0.250933815712 0.819197335126 6947 439 439;6947 -0.91026 0.3521 -6.720935 5.810675 0.0575706391814 0.635277214412 17272 822 822;17272 0.0 0.0 ENST00000528466.1 AntiNCintron coding exon(s) YPEL4 extended to upstream initiation codon 59349 564510 chr5:77851930-77851956+ NoOverlap chr5 77851930 77851956 + 5.83733326859 9 0.314941125607 3.06504444281 2.77228882578 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;77851929;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77851930-77851956%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A77851930-77851956&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0247662677289 -0.0218939490836 0.454906105205 77147754 77147780 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;77147753;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77851930-77851956%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A77147754-77147780&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QGVSPVARGAEAAAVR Same 565498 chr5:77851930-77851956+ 61781 61781 -2432 0 1311 77844392 77852299 1970 1970;21990;36224;37985;59349;64374;70990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:77844392-77852299&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.814814814815 1.38461538462 -8.8634 0.6472 -7.82877777778 -1.03462222222 0.030175118669 0.261128782079 28623 7731 7731;27249;28623;33111;43677;53467;56140 -4.68767777778 0.3062 -5.87711111111 1.18943333333 -0.0219805512965 0.356689902356 49756 5174 5174;34772;36018;49756;55548;66524;72923 0.0 0.0 ENST00000522370.1 AntiUTR5intron not annotated putative regulatory region 59416 479603 chr10:129846610-129846663+ NoOverlap chr10 129846610 129846663 + 3.92932768663 18 0.947905699245 1.26616673668 2.66316094995 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129846609;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129846610-129846663%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129846610-129846663&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0339341283721 -0.0221282232655 0.56651312317 131644874 131644927 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131644873;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129846610-129846663%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131644874-131644927&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") THSDPCKAASDGWLNHDESLGSLIYMPLNSTFGSIR Same 481508 chr10:129846610-129846663+ 60570 60570 -1154 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.275510204082 1.89950555556 0.9952 4.00097777778 -2.10147222222 0.00896510531635 0.139546552983 37237 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -1.32561111111 0.9937 -1.10379444444 -0.221816666667 0.00735626950022 0.368913019899 31889 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 59450 488615 chr11:66728061-66728150- NoOverlap chr11 66728061 66728150 - 1.96543006438 30 0.375175097276 1.10590662956 0.859523434813 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;66728060;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66728061-66728150-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A66728061-66728150&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00944888099138 -0.0222080612348 0.432862476783 66495532 66495621 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;66495531;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66728061-66728150-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A66495532-66495621&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPAPRPLCPGPRGGALCPAACGRRGRGRGRGR Same 490603 chr11:66728061-66728150- 57496 57496 1954 0 533 66718423 66728928 806 806;4911;26982;44139;59450;60343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:66718423-66728928&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.844444444444 1.21448863636 -0.596883333333 0.5857 -2.63478333333 2.0379 -0.0324883858443 0.544201122159 62074 593 593;16712;20471;28103;45869;62074 -6.64449333333 0.3884 -6.35498666667 -0.289506666667 -0.0436988259901 0.416527752227 67889 1083 1083;7192;12271;30758;47247;67889 0.0 0.0758578296386 chr2:97090109-97090325- ENST00000527010.1 UTR5intron coding exon(s) SPTBN2 alternative first coding exon. 59463 534723 chr2:110333912-110333953+ NoOverlap chr2 110333912 110333953 + 4.84764988082 14 0.675155042562 1.55135718414 3.29629269668 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110333911;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110333912-110333953%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110333912-110333953&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0119736730059 -0.022246578347 0.598081241597 111091489 111091530 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;111091488;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110333912-110333953%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A111091489-111091530&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAVACVPRPASHHCPERGTTTPRPCSTGSFSVSVPR Same 536075 chr2:110333912-110333953+ 60203 60203 -740 0 182 110330068 110348951 220 220;299;701;761;1255;1278;2099;2140;4902;6905;8549;11571;11684;12330;16983;17657;19273;24630;35755;42632;57364;59463 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110330068-110348951&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.245614035088 0.341471428571 0.6995 -6.27167857143 6.61315 0.0277324866549 0.812712068143 29593 38 38;133;184;784;1121;1319;1496;1644;1980;2421;2937;3789;4022;4226;4292;5188;5475;6898;11453;14085;16690;29593 15.8778714286 0.7438 -7.78751428571 23.6653857143 0.821196212557 1.04718827622 2405 123 123;251;305;394;480;614;631;723;1065;1109;1218;1248;1356;1412;1692;1798;1925;2356;2405;2438;2455;57064 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283167, one of two pseudogenic copies of a large 51 exon mouse coding gene 59469 515916 chr17:2215594-2215656+ NoOverlap chr17 2215594 2215656 + 3.40789531242 21 0.889170090864 1.37667131566 2.03122399676 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2215593;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2215594-2215656%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2215594-2215656&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0481972625125 -0.0222653316051 0.514611657156 2118888 2118950 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2118887;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2215594-2215656%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2118888-2118950&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CQLHQHMKSIRVKPQQGDQRAEKLHSTCVCGGGSHGLPNSSR Same 517292 chr17:2215594-2215656+ 57991 57991 1478 0 7511 2213699 2215813 10766 10766;26566;59469 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2213699-2215813&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.492063492063 0.538461538462 0.988014285714 0.9704 -1.80823809524 2.79625238095 0.0787166694923 0.562556876019 18461 15508 15508;18461;64284 -0.690095238095 0.8805 -8.24074285714 7.55064761905 0.133151467474 0.714780316849 8934 Best 8934 8934;24030;43013 0.0 0.0 ENST00000413674.1,ENST00000263073.10,ENST00000572205.5 AntiNC,AntiCDSintron,AntiUTR5intron not annotated potentially spurious 59486 546273 chr21:8217398-8217568+ NoOverlap chr21 8217398 8217568 + 1.74744557236 57 0.243994704852 1.34456310173 0.402882470635 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8217397;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217398-8217568%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8217398-8217568&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00406032600848 -0.0223202316569 0.468290484979 116873 117043 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;116872;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217398-8217568%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A116873-117043&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGPPRRVRPRGRGSARRLASAGA*QPT*NWCGPGESDCLIKTKHREGPRRVLTRCDFCPVL Same 547686 chr21:8217398-8217568+ 58387 58387 1099 28 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.690058479532 1.22844827586 0.850587719298 0.0816 0.497852631579 0.352735087719 0.018503829237 0.473877117742 33191 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 0.808535087719 0.0786 0.261089473684 0.547445614035 -0.0347499869912 0.533078262074 61272 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.116596338206 chr3:9838171-9838207- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 59530 511811 chr16:54928752-54928817+ NoOverlap chr16 54928752 54928817 + 2.67539546029 22 0.448306595365 0.315140940926 2.36025451937 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54928751;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54928752-54928817%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54928752-54928817&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0080383494908 -0.0224414552207 0.572734412273 54962664 54962729 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54962663;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54928752-54928817%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54962664-54962729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TARPEGLARAGAHLSSAARARGPRTLPRGWR Same 513452 chr16:54928752-54928817+ 57800 57800 1730 0 496 54928752 54938880 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.863636363636 1.05925925926 -0.970145454545 0.5949 -1.40165909091 0.431513636364 -0.0416496304485 0.354471952149 67484 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -6.74758636364 0.2841 -6.11618636364 -0.6314 -0.0426329789375 0.364988837856 67144 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.186833910889 chr5:3596106-3596381+ ENST00000557792.1 AntiNC not annotated putative regulatory region 59548 514457 chr16:56191326-56191424- NoOverlap chr16 56191326 56191424 - 2.32742425664 33 0.351407413573 1.58556052501 0.741863731634 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;56191325;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191326-56191424-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A56191326-56191424&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000600178822401 -0.0225064526537 0.432494355685 56225238 56225336 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;56225237;99;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191326-56191424-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A56225238-56225336&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGPGRGGGQRSARVRQRLCAPGSAGRQLTSAGPRAGPPGR Same 516109 chr16:56191326-56191424- 57789 57789 1759 0 1286 56191313 56194112 1942 1942;3444;31465;36646;38456;47043;50502;59548;64898;65693 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:56191313-56194112&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.828282828283 1.00357781753 -1.25131515152 0.4595 -1.494 0.242684848485 -0.0432706737797 0.387678875453 68363 5744 5744;16309;26528;60646;61684;66065;68363;69167;72514;73281 -6.58495757576 0.3006 -8.01318484848 1.42822727273 -0.0433362237346 0.500431952179 67638 7040 7040;17639;26908;52826;54474;57942;62845;66974;67638;71986 0.0 0.297045818107 chr2:240934331-240934475+ ENST00000262493.10 AntiUTR5 not annotated putative regulatory region 59551 522791 chr17:64501344-64501370- NoOverlap chr17 64501344 64501370 - 6.70477765136 9 0.96749828336 1.29487772783 5.40989992354 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;64501343;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64501344-64501370-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A64501344-64501370&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0152095634557 -0.0225153618906 0.766700198574 62497462 62497488 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;62497461;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A64501344-64501370-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A62497462-62497488&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLPHLHSSRHVETCQRETHSQVNPGFLEALA Same 524225 chr17:64501344-64501370- 60247 60247 -696 0 785 64497052 64506947 1219 1219;1314;11116;12743;15272;20390;22680;57720;59551 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:64497052-64506947&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.592592592593 0.857142857143 1.10914444444 0.9463 -1.47522222222 2.58436666667 -0.0404063972677 0.435187949372 66796 3317 3317;9751;12985;29872;53023;54218;61045;63372;66796 -2.5531 0.9081 -9.2755 6.7224 -0.0114221520462 0.581266052147 41797 5759 5759;11482;17125;20897;41797;70711;70752;72223;73201 0.0 0.0 ENST00000580026.5,ENST00000225792.9,ENST00000540698.6 NC,CDSintron,NCintron coding exon(s) DDX5 alternative first exon 59603 511819 chr16:54930741-54930845+ NoOverlap chr16 54930741 54930845 + 2.9537629627 35 0.661477291306 2.63947149856 0.314291464138 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54930740;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54930741-54930845%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54930741-54930845&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.106281902965 -0.0226823776482 0.384207207771 54964653 54964757 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54964652;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54930741-54930845%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54964653-54964757&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RAWRPGWLRPPRSSCQSSHRLHPGKEELRARTRRQNPQFPT Same 513460 chr16:54930741-54930845+ 63011 63011 -3408 0 496 54928752 54938880 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.851351351351 -3.01253428571 0.8672 -3.77225714286 0.759722857143 -0.067779828432 0.421374728224 72970 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -11.4377942857 0.7667 -12.7017457143 1.26395142857 -0.0487036596089 0.474283553544 70819 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.0 not annotated putative regulatory region 59689 479615 chr10:129849946-129849990+ NoOverlap chr10 129849946 129849990 + 4.09974645774 15 0.997752854709 -0.89138657252 4.99113303026 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129849945;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129849946-129849990%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129849946-129849990&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0811908015265 -0.022878831172 0.817906338014 131648210 131648254 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131648209;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129849946-129849990%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131648210-131648254&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCQR*LGGQFVMSLPRPRPECQAK Same 481520 chr10:129849946-129849990+ 66759 66759 -7070 5 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 0.346153846154 1.91884666667 0.9961 -5.29975333333 7.2186 0.174404256274 0.86560306247 10037 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 3.28777333333 0.9605 -7.03408 10.3218533333 0.196183273779 0.778824966077 6352 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 59725 520015 chr17:4807054-4807131- NoOverlap chr17 4807054 4807131 - 2.99609230803 26 0.574211079224 1.86393461455 1.13215769347 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;4807053;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A4807054-4807131-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A4807054-4807131&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00866018527901 -0.0229708396162 0.43687193194 4710349 4710426 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;4710348;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A4807054-4807131-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A4710349-4710426&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGAGRGGAGAQGLPSGAGRPPASPPRDSR Same 521422 chr17:4807054-4807131- 61337 61337 -1612 0 454 4801292 4807131 651 651;1841;59725 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:4801292-4807131&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 0.742857142857 -3.15566923077 0.7453 -2.75719230769 -0.398476923077 -0.0472765762144 0.29602504836 70127 332 332;2105;70127 -8.72151153846 0.4413 -6.69835 -2.02316153846 -0.0510511527523 0.323428636054 71746 389 389;3344;71746 0.0 0.150807645891 chr1:63323059-63324495+ ENST00000263088.10 AntiUTR5 protein-coding gene protein-coding gene ENSG00000262165 59741 533871 chr2:66700277-66700309+ NoOverlap chr2 66700277 66700309 + 6.12543641031 11 0.964404863466 2.75995459882 3.36548181149 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;66700276;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A66700277-66700309%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A66700277-66700309&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0422756191271 -0.0230343263053 0.553830408357 66927409 66927441 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;66927408;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A66700277-66700309%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A66927409-66927441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QQTNQTPNWFLSCR Same 535255 chr2:66700277-66700309+ 61300 61300 -1559 0 4061 66695564 66700411 5616 5616;19561;59741;72084 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:66695564-66700411&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.545454545455 0.825 -0.421190909091 0.9874 -0.998672727273 0.577481818182 -0.0378815377291 0.293550761548 65347 13483 13483;24924;65088;65347 -2.02017272727 0.7924 -3.82619090909 1.80601818182 -0.0230046623538 0.399125650227 50700 27624 27624;34537;43215;50700 0.0 0.0 ENST00000412944.1,ENST00000433432.1,ENST00000432410.5 NCintron,AntiNC,AntiNCintron not annotated potentially spurious 59775 547292 chr21:8441130-8441498- NoOverlap chr21 8441130 8441498 - 1.42946587115 123 0.183794918746 1.10079025314 0.328675618017 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8441129;369;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441130-8441498-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8441130-8441498&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00969078312602 -0.0231231904072 0.487074500317 157304 157672 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157303;369;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8441130-8441498-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157304-157672&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSVSCRYLALDGVYHPLWAAFPSNPTPGRPGPGAPGAATGLTPSTGWASIRRTWAPHERRRGAGLPYATCPAPRRGAGIRRWALPCSLAVTEGILVSFFSSAD*YA*IQRVATSDLRSRLGGGR Same 548695 chr21:8441130-8441498- 64310 64310 -4535 20 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.658536585366 1.02527785308 -0.986943902439 0.2925 -1.70559430894 0.718650406504 0.00327204665436 0.505776675211 39860 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -4.42791626016 0.3859 -5.97292357724 1.54500731707 0.076119407804 0.57899321183 14317 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0530613334982 chr19:19226486-19227073+ not annotated SSU-rRNA_Hsa 59870 479929 chr10:8052042-8052137- NoOverlap chr10 8052042 8052137 - 2.63137186505 32 0.517133020523 1.51788747497 1.11348439008 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8052041;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8052042-8052137-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8052042-8052137&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00179800219898 -0.0234283858674 0.475972011573 8094005 8094100 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8094004;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8052042-8052137-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8094005-8094100&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLIPSRPAPVPGLTVGNWERGRCSFDGPRRPVSPTPHWV Same 481837 chr10:8052042-8052137- 60764 60764 -894 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.677083333333 0.909090909091 2.26400625 0.9393 1.57130625 0.6927 0.127881828784 0.447838401501 13251 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -5.49213125 0.6046 -4.361040625 -1.131090625 -0.0278907686763 0.393848672778 55183 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 ENST00000355358.1,ENST00000418270.1 NCintron,AntiNCintron not annotated putative regulatory region 59889 491309 chr12:49021006-49021035+ NoOverlap chr12 49021006 49021035 + 6.18647998273 10 0.80888532845 1.24548994303 4.94099003971 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;49021005;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49021006-49021035%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A49021006-49021035&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00320068753229 -0.0234696246772 0.735125329676 49414789 49414818 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49414788;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49021006-49021035%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49414789-49414818&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WIFCCCFSSSSYPPSTHSEEGSEVGERVGAVGGLER Same 493286 chr12:49021006-49021035+ 56625 56625 3264 0 27 49020566 49033910 27 27;1869;2293;3141;4665;5179;14171;29832;59889;70464 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:49020566-49033910&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.633333333333 0.0 2.73822 0.9784 1.28039 1.45783 -0.00134670248926 0.344284532593 42176 391 391;2014;2802;4299;4455;6825;32787;42176;48473;48787 -6.37143 0.4202 -6.45956 0.08813 -0.0305656842665 0.319675606287 57651 2210 2210;2935;3946;7899;19234;24986;25843;31483;36637;57651 0.0 0.0 ENST00000301067.11 AntiUTR3 not annotated potentially spurious 59911 534543 chr2:104431923-104431958+ NoOverlap chr2 104431923 104431958 + 5.50176668912 12 0.946162355993 1.64374158283 3.85802510629 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;104431922;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A104431923-104431958%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A104431923-104431958&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0243293317657 -0.0235233297815 0.63854203343 105048381 105048416 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;105048380;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A104431923-104431958%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A105048381-105048416&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CYHPSPTVWVNGEKREIVTVFHLCSSCK Same 535895 chr2:104431923-104431958+ 60603 60603 -692 0 4171 104430374 104434436 5767 5767;7541;18142;33869;59911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:104430374-104434436&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.583333333333 0.367346938776 0.804683333333 0.9899 -0.520825 1.32550833333 -0.0141692499806 0.35808602658 50022 9209 9209;10532;13016;14084;50022 -3.20454166667 0.756 -5.7827 2.57815833333 -0.0223052065156 0.436917341377 50064 9820 9820;22956;28260;33042;50064 0.0 0.0 not annotated potentially spurious 59917 510981 chr16:24610186-24610266+ NoOverlap chr16 24610186 24610266 + 2.52515186314 27 0.785567225882 0.244163009855 2.28098885329 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;24610185;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A24610186-24610266%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A24610186-24610266&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0146137234512 -0.0235513071896 0.601344241089 24621507 24621587 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;24621506;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A24610186-24610266%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A24621507-24621587&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADLSHHMMGDLYHVMAPVMLEAACDSQGYVGSK Same 512619 chr16:24610186-24610266+ 61109 61109 -1192 0 14580 24609769 24610266 24254 24254;59917 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:24609769-24610266&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.58024691358 0.476470588235 -1.57954814815 0.985 -5.33827407407 3.75872592593 0.0451167591713 0.673486983955 24277 Best 24277 24277;34722 -4.32918888889 0.5428 -10.9922 6.66301111111 0.100721152743 0.704994838596 11436 Best 11436 11436;54804 0.0 0.0 ENST00000566108.1 NC not annotated potentially spurious 59923 506370 chr15:40323787-40323825+ NoOverlap chr15 40323787 40323825 + 4.93457682087 13 0.447497813852 2.2867076695 2.64786915137 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;40323786;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323787-40323825%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A40323787-40323825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00850676274255 -0.0235636269802 0.500800097439 40615988 40616026 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;40615987;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323787-40323825%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A40615988-40616026&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LWRLWLWRRRGSS Same 508081 chr15:40323787-40323825+ 60113 60113 -190 0 1677 40313687 40324514 2488 2488;29639;48301;50245;50817;59923;62142;66647;67529;68396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:40313687-40324514&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.769230769231 0.825396825397 -3.6645 0.3533 -2.25806153846 -1.40643846154 0.0212186880879 0.179423914667 32124 2234 2234;17663;29719;32124;51811;55466;56351;56933;64873;66727 -9.15301538462 0.3356 -5.18966153846 -3.96335384615 -0.00760016639872 0.19326112371 39510 2097 2097;14593;22796;39510;43273;44464;48619;53899;64626;73766 0.0 0.101832689214 chr3:8767266-8768187- not annotated putative regulatory region 59931 529198 chr19:53211811-53211855+ NoOverlap chr19 53211811 53211855 + 3.78336001635 15 0.379705500877 -0.769426679611 4.55278669596 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;53211810;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A53211811-53211855%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A53211811-53211855&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0102574283418 -0.0235957313637 0.772892400248 53715064 53715108 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;53715063;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A53211811-53211855%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A53715064-53715108&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IHTGEKPYRCNECGKTFNR Same 530657 chr19:53211811-53211855+ 55183 55183 4748 0 5132 53204022 53212191 7119 7119;23010;34818;59931 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:53204022-53212191&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.46875 14.34558 0.501 -1.06979333333 15.4153733333 0.353177703071 1.03119814838 4633 1567 1567;2158;4633;8326 47.86428 0.7983 7.47636 40.38792 1.02646709529 1.01352093023 671 332 332;671;880;1494 0.339655737649 chr19:52290066-52291124+ 0.634507166 chr19:52290066-52291124+ pseudogene zinc finger protein pseudogene (ENSG00000269001) 59962 539833 chr2:110025618-110025665- NoOverlap chr2 110025618 110025665 - 3.69604386808 16 0.411562523842 1.03502500476 2.66101886332 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;110025617;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025618-110025665-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A110025618-110025665&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00877781224803 -0.0237017632448 0.549133220579 110783195 110783242 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;110783194;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A110025618-110025665-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A110783195-110783242&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GITLAEGSPQPRTCEIGTFQPHIWGEK Same 541193 chr2:110025618-110025665- 58317 58317 1645 0 292 110022446 110035237 386 386;451;1196;1460;2331;3594;3792;5623;6348;8096;8130;10341;13504;16805;18127;18675;32639;42558;59962 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:110022446-110035237&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 0.0 8.18366875 0.6558 2.4430625 5.74060625 0.20103637912 0.755738361556 8726 80 80;183;212;733;1065;1622;1681;2045;2430;2490;2566;2795;3040;3242;3427;3977;4153;6966;8726 1.1418125 0.3245 -6.87585625 8.01766875 0.0783456668736 0.697893181103 14012 97 97;152;196;244;479;687;1149;1337;1449;1533;1630;1669;1755;2114;2230;2232;2267;2516;14012 0.0 0.0 pseudogene uncharacterised pseudogene ENSG00000283283, one of two pseudogenic copies of a large 51 exon mouse coding gene 60040 546241 chr21:8211477-8211527+ NoOverlap chr21 8211477 8211527 + 2.97558811132 17 0.542612613826 -2.34487057609 5.3204586874 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8211476;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8211477-8211527%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8211477-8211527&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0355548070246 -0.023911334342 0.874800827831 110924 110974 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;110923;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8211477-8211527%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A110924-110974&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VNLRKDH*RSPEGEARGGAAAAR Different 547655 chr21:8211477-8211509+ 59455 59455 585 8 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.686274509804 1.04081632653 -1.34421176471 0.2292 -4.3156 2.97138823529 0.0119619897745 0.539968493508 35955 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -2.74158235294 0.1783 -5.40368823529 2.66210588235 -0.0225485766171 0.478473849636 50269 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 60089 579346 chr7:128869847-128869879+ NoOverlap chr7 128869847 128869879 + 5.5445091616 11 0.395703891744 1.9380636432 3.60644551841 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;128869846;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A128869847-128869879%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A128869847-128869879&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0187761497187 -0.0240357250249 0.593685336772 128509901 128509933 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;128509900;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A128869847-128869879%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A128509901-128509933&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APGSQAWPTSCSPGAGPTPGPCSPCGSR Same 580390 chr7:128869847-128869879+ 60525 60525 -436 0 172 128866410 128869879 206 206;588;599;60089;63616 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:128866410-128869879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.787878787879 0.4 -7.36775454545 0.7675 -6.18943636364 -1.17831818182 0.0380695374462 0.228799223056 26130 402 402;800;1076;26130;53327 -11.7928454545 0.4457 -14.4481363636 2.65529090909 -0.0241440616478 0.397988970942 51704 19 19;145;1707;46080;51704 0.0 0.307404113591 chr11:118627305-118628650+ ENST00000609480.2,ENST00000492679.5 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000272899 60187 546380 chr21:8398673-8399008+ NoOverlap chr21 8398673 8399008 + 1.38745537041 112 0.183659222444 0.859102687532 0.528352682878 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398672;336;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398673-8399008%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398673-8399008&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0100788967065 -0.0243143595212 0.488793944368 159076 159411 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159075;336;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398673-8399008%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159076-159411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWGRNDLNLFSNFKWVRSPARWRGAGRGMRVPSGPLLVSRTGAAG*TERRVKAPDADAHQTPEKVLVDIDSRTVAMEVGIR*GVCNNSPAESTSPENGWRWSVGPIPGRRRQSR Same 547793 chr21:8398673-8399008+ 60407 60407 -220 67 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.58630952381 1.01584653878 -1.20595982143 0.2706 -1.23910803571 0.0331482142857 -0.0233663402192 0.405028409014 56418 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -4.06407321429 0.219 -4.16916339286 0.105090178571 -0.0205558931917 0.516125561682 48549 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.108767258357 chr3:9841908-9842082- ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 60188 546441 chr21:8442902-8443237+ NoOverlap chr21 8442902 8443237 + 1.38745537041 112 0.183659222444 0.859102687532 0.528352682878 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442901;336;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442902-8443237%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442902-8443237&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0100788967065 -0.0243143595212 0.488793944368 159076 159411 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159075;336;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442902-8443237%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159076-159411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWGRNDLNLFSNFKWVRSPARWRGAGRGMRVPSGPLLVSRTGAAG*TERRVKAPDADAHQTPEKVLVDIDSRTVAMEVGIR*GVCNNSPAESTSPENGWRWSVGPIPGRRRQSR Same 547854 chr21:8442902-8443237+ 60408 60408 -220 67 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.58630952381 1.01584653878 -1.08245625 0.2749 -1.20859107143 0.126134821429 -0.0186809722986 0.414866389029 53240 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -2.78610803571 0.2344 -2.77798303571 -0.008125 -0.00471859665018 0.514727226972 37852 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 not annotated LSU-rRNA_Hsa 60196 537374 chr2:240568631-240568813+ NoOverlap chr2 240568631 240568813 + 1.54263770864 61 0.284023178704 0.491363982441 1.05127372619 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;240568630;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240568631-240568813%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A240568631-240568813&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00849648242832 -0.0243468343678 0.562032262252 241508048 241508230 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;241508047;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A240568631-240568813%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A241508048-241508230&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRARPPAARAAARPGRGLGLQRAALPPPPPAAGPGAAARGARVGRLPGARAVRAAARAPRAR Same 538745 chr2:240568631-240568813+ 56760 56760 3436 0 187 240560378 240572566 225 225;4611;43454;53343;54932;58666;60196 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:240560378-240572566&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.814207650273 1.07252747253 -2.85009508197 0.492 -4.13813442623 1.28803934426 -0.0288970858106 0.485625979118 59851 635 635;2542;29313;56709;59851;60661;63450 -21.2577262295 0.7072 -24.1265360656 2.86880983607 -0.0671739312203 0.534122593958 73682 1672 1672;2162;18782;46446;66739;70450;73682 0.0 0.307012341478 chr1:201982667-201983113+ ENST00000270357.8,ENST00000451363.5,ENST00000418708.3,ENST00000418505.3 UTR5,UTR5intron,AntiUTR5intron,AntiNCintron coding exon(s) RNPEPL1 extended 5' 60283 546400 chr21:8436296-8436619+ NoOverlap chr21 8436296 8436619 + 1.18134997695 108 0.166235599298 1.9871814749 -0.805831497949 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8436295;324;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436296-8436619%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8436296-8436619&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00855386190417 -0.0246069179801 0.310355681334 152470 152793 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;152469;324;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8436296-8436619%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A152470-152793&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPASVGPPLAVVWRVPPLRPRPPAGLGAGLRPGPGPSTGPVRGRCGRTARLSPGRAPRSASRSPPGRRGRPAGRAERRPRLAAARGRRPRARARGRRSLPAAGRGSGRPPPRGRARRRSVAGLWR Same 547813 chr21:8436296-8436619+ 67827 67827 -7544 0 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.876543209877 1.22337042925 -2.91336296296 0.2624 1.8374712963 -4.75083425926 -0.0499061533994 0.0310275390016 70940 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 0.400402777778 0.2301 5.25538148148 -4.8549787037 0.0033784323257 0.33083276475 33698 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.200649422634 chr10:133352247-133352440+ not annotated LSU-rRNA_Hsa 60330 538846 chr2:62090493-62090531- NoOverlap chr2 62090493 62090531 - 4.21869222533 13 0.353280396265 -2.14495378274 6.36364600807 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;62090492;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62090493-62090531-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A62090493-62090531&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00283105400328 -0.0247234694553 0.925536359711 62317628 62317666 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;62317627;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A62090493-62090531-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A62317628-62317666&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SCDNLDIEDQAFLAFDLYPPQDVISMETNWPEETLNVLDSDLVSVLQSSNK Same 540224 chr2:62090493-62090531- 51943 51943 8387 0 4201 62090379 62098552 5807 5807;9378;16413;23472;30603;31257;31738;37884;39411;39831;40238;47289;47871;60330 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:62090379-62098552&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.410256410256 0.619047619048 -0.155223076923 0.0562 -2.16321538462 2.00799230769 0.0339598911431 0.42584675137 27320 25524 25524;26861;26868;27320;27716;28529;29058;29681;29752;30231;33131;33707;35130;53045 -0.155223076923 0.0176 -2.16321538462 2.00799230769 0.00443839517717 0.423683840292 33208 27790 27790;33208;34475;42912;45212;49875;54010;54635;59237;59756;60891;69362;69618;72920 0.0 0.0 ENST00000421323.1,ENST00000311832.5,ENST00000472729.1 NCintron,AntiCDSintron,AntiNCintron not annotated retrotransposon sequence 60343 488617 chr11:66728335-66728487- NoOverlap chr11 66728335 66728487 - 2.87543922078 51 0.41900705655 2.90533918844 -0.0298999676517 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;66728334;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66728335-66728487-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A66728335-66728487&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0557412390346 -0.0247670619982 0.402461722881 66495806 66495958 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;66495805;153;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A66728335-66728487-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A66495806-66495958&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LGPRPEPRGAAGSRWSRASRGSRRPAAGGGYCPPSAAPQSRRSRPRAAATRPAAARPARPPR Same 490605 chr11:66728335-66728487- 59409 59409 934 0 533 66718423 66728928 806 806;4911;26982;44139;59450;60343 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:66718423-66728928&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.843137254902 1.04794520548 1.38491372549 0.4539 0.000880392156863 1.38403333333 0.031587139445 0.575316813864 28103 593 593;16712;20471;28103;45869;62074 -2.64493137255 0.2579 -2.97844705882 0.333515686275 -0.0189120966801 0.510040243171 47247 1083 1083;7192;12271;30758;47247;67889 0.0 0.0 ENST00000527010.1 UTR5intron coding exon(s) SPTBN2 alternative first coding exon. 60389 560662 chr4:183797080-183797127+ NoOverlap chr4 183797080 183797127 + 3.99971880252 16 0.646787022202 0.197743732482 3.80197507003 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;183797079;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A183797080-183797127%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A183797080-183797127&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0199081450998 -0.0248998755011 0.692160203802 184718233 184718280 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;184718232;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A183797080-183797127%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A184718233-184718280&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IHLFQREVGGGGRGGAWGGATLAAPESVPSK Same 561650 chr4:183797080-183797127+ 61773 61773 -1384 0 258 183797080 183798363 336 336;22308;39732;60389 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:183797080-183798363&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.729166666667 0.96 -5.96899375 0.9188 -11.09383125 5.1248375 -0.0316060338376 0.688720455192 61548 532 532;13984;57259;61548 -11.08280625 0.4491 -15.704325 4.62151875 -0.0300529117102 0.512484283651 57149 649 649;14910;57149;60548 0.0 0.047603380484 chr1:6578653-6579584+ coding exon(s) STOX2 alternative first coding exon 60488 484836 chr11:64234553-64234789+ NoOverlap chr11 64234553 64234789 + 1.96259621749 79 0.366354822479 2.15678733191 -0.194191114421 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64234552;237;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64234553-64234789%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64234553-64234789&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0221236517394 -0.0252140533537 0.396357805693 64002025 64002261 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64002024;237;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64234553-64234789%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64002025-64002261&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPASPGPAPRRPRRPRRRCPPPPAARPPGSSGRLRCAALRCLHPGLGRGPRRSRPPRPAPARRARARAMGLWLSPPPAPPG Same 486783 chr11:64234553-64234789+ 58472 58472 2016 0 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.89029535865 0.922792022792 -3.62324177215 0.3956 -3.07057974684 -0.552662025316 -0.0555318013404 0.277196029987 72035 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 -8.22121518987 0.2436 -7.93011012658 -0.291105063291 -0.0285063185291 0.477708559708 55760 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.176065027678 chr17:81228928-81229476- ENST00000309422.6 UTR5 under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 60530 503472 chr14:23352833-23352961- NoOverlap chr14 23352833 23352961 - 1.46421166076 43 0.663081506243 -1.00682551639 2.47103717715 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23352832;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352833-23352961-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23352833-23352961&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.147233634911 -0.0253418550768 0.713841166371 23822042 23822170 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23822041;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352833-23352961-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23822042-23822170&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APLPSLPWALAPLPLSDEESGPKVLLTWEGEESLEEGEGKAAQRSQRPRRRPRLQSCRAGSLR Same 505311 chr14:23352833-23352961- 64537 64537 -4007 0 605 23352215 23352971 930 930;2839;33934;60530;60698;63662 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23352215-23352971&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.635658914729 0.79739010989 -4.42114883721 0.9451 -6.48971162791 2.0685627907 -0.082174391681 0.528664511883 73449 1342 1342;1960;18367;45222;70218;73449 -9.57715116279 0.4149 -12.294044186 2.71689302326 -0.0337923322638 0.570728894777 60471 3678 3678;4381;6108;16098;43094;60471 0.0 0.117974034749 chr6:3455906-3456043- ENST00000354772.7,ENST00000474057.5 UTR5,NC under investigation SLC22A17 potential non-ATG start 60545 507873 chr15:95940961-95940999+ NoOverlap chr15 95940961 95940999 + 5.34239222453 13 0.945498295098 2.75691538132 2.58547684321 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;95940960;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95940961-95940999%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A95940961-95940999&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0551231814638 -0.0253840519682 0.487243606937 96484190 96484228 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;96484189;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95940961-95940999%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A96484190-96484228&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QIAMTGLRWSLVME Same 509604 chr15:95940961-95940999+ 60755 60755 -210 0 724 95929520 95940999 1117 1117;29291;60545 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:95929520-95940999&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.538461538462 0.866666666667 1.07511538462 0.9985 -0.152407692308 1.22752307692 0.00115659915666 0.357840260672 40919 10418 10418;11963;40919 -2.20368461538 0.5253 -2.70362307692 0.499938461538 -0.0246797860481 0.362569815504 52225 13463 13463;23021;52225 0.0 0.0 not annotated putative regulatory region 60600 475813 chr1:213987831-213987896- NoOverlap chr1 213987831 213987896 - 2.43598180603 22 0.43388196453 0.313509067351 2.12247273868 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;213987830;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213987831-213987896-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A213987831-213987896&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0152915293987 -0.025576498376 0.543146771026 214161174 214161239 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214161173;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213987831-213987896-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214161174-214161239&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHVTVYLTYPAPAPNREAPSDSRGDSKAR Same 477703 chr1:213987831-213987896- 58499 58499 2101 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.651515151515 0.857142857143 0.834068181818 0.8521 -0.778604545455 1.61267272727 0.0153470217608 0.463031939679 34505 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -6.22743636364 0.7441 -7.98015454545 1.75271818182 -0.0183537591276 0.462932778099 46837 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000433082.6,ENST00000471129.1 NCintron,AntiUTR5intron not annotated potentially spurious 60673 531722 chr19:48477680-48477721- NoOverlap chr19 48477680 48477721 - 4.97052138831 14 0.744631549118 3.12938572679 1.84113566152 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;48477679;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48477680-48477721-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A48477680-48477721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0450646784301 -0.0258279318807 0.405505193786 48980937 48980978 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;48980936;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A48477680-48477721-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A48980937-48980978&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPTSWGRQRESRQDQVQEK Same 533197 chr19:48477680-48477721- 59924 59924 749 0 254 48469331 48498684 328 328;2669;5572;6915;6996;9279;13618;14799;16835;17001;20082;22537;26624;33847;35248;37684;45585;55321;60673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:48469331-48498684&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.642857142857 0.238636363636 -0.306785714286 0.9867 -4.60343571429 4.29665 0.0116809410661 0.630313626599 36075 623 623;1641;2959;3033;3908;5683;7445;7573;10240;18819;21592;22917;27987;30483;30624;36075;37926;48700;56113 -10.9067285714 0.566 -15.17725 4.27052142857 -0.0379860699159 0.486332187304 63731 1938 1938;3653;4032;5042;8613;10249;11118;18150;20028;26250;31672;34610;45236;49177;52160;60369;63614;63731;71040 0.0 0.0 ENST00000493260.5,ENST00000427476.4,ENST00000391881.7 AntiNC,AntiCDSintron,AntiNCintron coding exon(s) LMTK3 alternative final coding exon, based on a translation that runs for at least 5 shared exons in a different frame. This annotation appeared for the first time in GENCODEv29. 60698 503470 chr14:23352606-23352665- NoOverlap chr14 23352606 23352665 - 3.28846998811 20 0.575800717174 0.687365016341 2.60110497177 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23352605;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352606-23352665-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23352606-23352665&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0134607750062 -0.0258913845441 0.582604657794 23821815 23821874 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23821814;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352606-23352665-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23821815-23821874&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SPPPPTE*VPEPQVATPSSPSTPAPAER Same 505309 chr14:23352606-23352665- 61735 61735 -1037 8 605 23352215 23352971 930 930;2839;33934;60530;60698;63662 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23352215-23352971&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.683333333333 0.659340659341 -3.908535 0.9108 -9.77387 5.865335 -0.00689837890781 0.780051941379 45222 1342 1342;1960;18367;45222;70218;73449 -0.540285 0.4573 -11.538835 10.99855 0.204584915942 0.841944811945 6108 3678 3678;4381;6108;16098;43094;60471 0.0938267002125 chr14:23351948-23352214- 0.0759336614011 chr2:176171517-176172274+ ENST00000354772.7,ENST00000474057.5 UTR5,NC under investigation SLC22A17 potential non-ATG start 60818 546393 chr21:8401751-8401984+ NoOverlap chr21 8401751 8401984 + 1.40381283604 78 0.226039520867 2.21473464212 -0.810921806078 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8401750;234;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401751-8401984%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8401751-8401984&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00382853164899 -0.0263060606104 0.308266011266 118188 118421 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;118187;234;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8401751-8401984%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A118188-118421&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGACPAARRDRGPVRSALRPGKRGAAGEAAAPSPVTHRTFVGNLALNHS*TTCFWVGVSYVAEQLPRCDLLKVSPRHKGLSAR None NA NA 32 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.683760683761 1.17 -0.116534615385 0.0986 0.340841025641 -0.457375641026 -0.0115307412853 0.365590542876 48142 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -1.92148076923 0.1107 -0.709491025641 -1.21198974359 -0.0233872527579 0.454784802864 51048 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.203099994525 chr19:44649809-44650105+ ENST00000617236.1,ENST00000623860.2 NC,NCintron not annotated LSU-rRNA_Hsa 60836 547213 chr21:8398719-8399027- NoOverlap chr21 8398719 8399027 - 1.30914953228 103 0.183034782422 1.16949419648 0.139655335797 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398718;309;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398719-8399027-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398719-8399027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00931420314778 -0.0263690152134 0.427919190471 159122 159430 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159121;309;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398719-8399027-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159122-159430&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPRRSRPLSTAGDGRVWARRSSAIHFQG*LIRQVSCYTLLSGFRLPWPPSCCLYQPTPFLGSDERRHRAP*PGVRFIPQRQFCLPKVAH*ALAFHARLHASEPGFLPI Same 548615 chr21:8398719-8399027- 62884 62884 -2048 61 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.621359223301 1.03103103103 0.0738504854369 0.2662 -0.663089320388 0.736939805825 0.0209065465416 0.47184695542 32238 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -3.30416407767 0.2213 -3.9558815534 0.651717475728 -0.0104267409026 0.534459531873 41185 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0793921160292 chr11:1240851-1251743+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 60837 547309 chr21:8442948-8443256- NoOverlap chr21 8442948 8443256 - 1.30914953228 103 0.183034782422 1.16949419648 0.139655335797 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442947;309;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442948-8443256-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442948-8443256&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00931420314778 -0.0263690152134 0.427919190471 159122 159430 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159121;309;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442948-8443256-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159122-159430&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPRRSRPLSTAGDGRVWARRSSAIHFQG*LIRQVSCYTLLSGFRLPWPPSCCLYQPTPFLGSDERRHRAP*PGVRFIPQRQFCLPKVAH*ALAFHARLHASEPGFLPI Same 548712 chr21:8442948-8443256- 62885 62885 -2048 61 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.621359223301 1.03103103103 0.0763067961165 0.2675 -0.615633980583 0.691940776699 0.0202466713475 0.467854487648 32515 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -1.65715145631 0.2441 -2.65067864078 0.993527184466 0.0197687318636 0.552331964853 27061 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 60848 547194 chr21:8396934-8397278- NoOverlap chr21 8396934 8397278 - 1.38100175637 115 0.183794918746 1.08326262041 0.29773913596 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8396933;345;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396934-8397278-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8396934-8397278&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0113940019137 -0.0264027551491 0.463817691273 157328 157672 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;157327;345;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8396934-8397278-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A157328-157672&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSVSCRYLALDGVYHPLWAAFPSNPTPGRPGPGAPGAATGLTPSTGWASIRRTWAPHERRRGAGLPYATCPAPRRGAGIRRWALPCSLAVTEGILVSFFSSAD*YA*IQRVATSDLR Different 548598 chr21:8396973-8397278- 57041 57041 3807 12 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.649275362319 1.02054685002 -1.28416347826 0.2617 -2.2318626087 0.947699130435 -0.008044913857 0.489890553734 45913 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -3.41237217391 0.4082 -6.49213652174 3.07976434783 0.144182311121 0.63866027336 8292 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0340045296869 chr19:38212063-38212133- ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 60868 591075 chr9:136327474-136327575+ NoOverlap chr9 136327474 136327575 + 2.3638677264 34 0.356405423236 2.25468829011 0.109179436284 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;136327473;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136327474-136327575%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A136327474-136327575&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00112529079464 -0.0264976736957 0.35373550673 139221930 139222031 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;139221929;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A136327474-136327575%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A139221930-139222031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APSPRGRR*HHGHGGGRGGGAPRTSLPRRLPGGGRANEAR Same 592029 chr9:136327474-136327575+ 59642 59642 1226 6 94 136327474 136332153 111 111;48863;60868 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:136327474-136332153&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.813725490196 1.12937062937 -2.65537058824 0.4736 -4.48708823529 1.83171764706 -0.0446272988735 0.519644088964 69026 43 43;41700;69026 -10.4474411765 0.3918 -16.1662441176 5.71880294118 -0.0127053681158 0.661074320753 42655 1884 1884;42655;67049 0.0 0.166380321202 chr1:15928091-15936266+ ENST00000440944.5 UTR5 coding exon(s) GPSM1 5' coding exon 61040 512292 chr16:72427086-72427190+ NoOverlap chr16 72427086 72427190 + 1.91350003374 35 0.894339992806 -0.50399709131 2.41749712506 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72427085;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427086-72427190%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72427086-72427190&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0614585636771 -0.0270978695167 0.671279165057 72460985 72461089 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72460984;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427086-72427190%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72460985-72461089&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SYSSSKQAARDLSTFTAITREMNGADLKPFYKIHYGSEGGGGMPHR Same 513936 chr16:72427086-72427190+ 59044 59044 1996 0 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.495238095238 0.155555555556 -2.02797142857 0.9949 -3.21815714286 1.19018571429 -0.0191791236196 0.472148067199 53607 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -8.91500857143 0.7891 -7.97182285714 -0.943185714286 -0.0477160755162 0.398905878233 70367 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000564508.2,ENST00000561611.2,ENST00000624829.3 NC,AntiNC,AntiNCintron not annotated potentially spurious 61062 588147 chr8:143733704-143733922- NoOverlap chr8 143733704 143733922 - 1.19172467245 73 0.215537655817 1.48455752004 -0.292832847583 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;143733703;219;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143733704-143733922-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A143733704-143733922&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00417603684553 -0.0271811571992 0.375906464508 144815874 144816092 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;144815873;219;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A143733704-143733922-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A144815874-144816092&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGAGWGWRRARGAGMRARRGWGCPAPRCCPGRQEAGATGGAGAGA*IRPGGPRQGVAAGPTGPRGRWAAVGSCCPCAETPR Same 589092 chr8:143733704-143733922- 62858 62858 -1796 34 276 143733703 143738234 361 361;376;47468;58180;61062 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:143733703-143738234&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.831050228311 0.931681681682 -0.770442465753 0.3936 0.844850684932 -1.61529315068 -0.0352497544982 0.252027902397 63830 308 308;828;30909;52884;63830 -7.05554109589 0.2803 -5.33570821918 -1.71983287671 -0.0205821548509 0.420491770057 48572 720 720;3471;45407;48220;48572 0.0 0.24551485895 chr22:39995043-39995531+ ENST00000388913.3 UTR5 coding exon(s) FAM83H 5' coding extension. 61066 467309 chr1:153923177-153923335+ NoOverlap chr1 153923177 153923335 + 1.70749437303 53 0.874460571983 0.207162307118 1.50033206591 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;153923176;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153923177-153923335%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A153923177-153923335&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0109125177123 -0.0271936007536 0.613803310837 153895653 153895811 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;153895652;159;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153923177-153923335%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A153895653-153895811&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TEEGGWSSGGALMGTSASPRHIRVFDSPLSVGGQKIASGCNFTLETFWSPGSRRTPVSPNR Same 469176 chr1:153923177-153923335+ 57350 57350 3716 0 442 153922296 153923335 631 631;25620;45644;48477;49099;61066;66023;69687 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:153922296-153923335&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.584905660377 0.737476808905 -1.25593396226 0.9555 -3.20116792453 1.94523396226 0.0696802775096 0.587371518618 19724 8425 8425;19724;29638;38385;45793;48574;52177;55960 -2.47786226415 0.3747 -6.05242830189 3.57456603774 0.0863169223788 0.653881071349 12984 6002 6002;12984;19687;42340;44124;45459;47982;71255 0.0 0.0 not annotated putative regulatory region 61083 546253 chr21:8215133-8215264+ NoOverlap chr21 8215133 8215264 + 1.74764540114 44 0.369221859242 0.375772728839 1.3718726723 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8215132;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215133-8215264%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8215133-8215264&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0190103725628 -0.027241167539 0.570411735475 114598 114729 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;114597;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215133-8215264%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A114598-114729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARPPKRGTAERAHGVGGDVGYPPDPS*NTDQGV*HVRESGARTKAAVAQ Different 547665 chr21:8215034-8215264+ 52871 52871 8212 20 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.704545454545 1.35574229692 -0.539731818182 0.2631 -2.51279772727 1.97306590909 -0.000456647764523 0.591030430526 41730 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -2.176375 0.3016 -5.83241590909 3.65604090909 0.0461583777686 0.644798412109 19521 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 61135 558852 chr4:41752210-41752242+ NoOverlap chr4 41752210 41752242 + 6.13982731646 11 0.821248881583 4.59779085896 1.5420364575 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41752209;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41752210-41752242%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41752210-41752242&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0574373262471 -0.0274105649453 0.31796292473 41754227 41754259 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41754226;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41752210-41752242%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41754227-41754259&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FNYSNYRPTASGASTTRLGGKK Same 559835 chr4:41752210-41752242+ 58725 58725 2410 0 2000 41745545 41752242 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.606060606061 0.666666666667 2.59314545455 0.9979 1.40071818182 1.19242727273 0.0152858806064 0.33244999382 34537 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 -1.90847272727 0.8896 -2.8693 0.960827272727 -0.0256038075772 0.365750837411 53093 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0 ENST00000508038.1 NCintron not annotated putative regulatory region 61136 511821 chr16:54931143-54931196+ NoOverlap chr16 54931143 54931196 + 3.90928887493 18 0.678658562431 2.12126100125 1.78802787368 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;54931142;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54931143-54931196%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A54931143-54931196&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0194251469408 -0.0274174548194 0.450573793427 54965055 54965108 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;54965054;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A54931143-54931196%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A54965055-54965108&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAAAQGSQRPGARPLALAGRRPARWRPRRGAPHARVWPCPIR Same 513462 chr16:54931143-54931196+ 62115 62115 -979 0 496 54928752 54938880 736 736;12762;33668;37931;41229;42533;43166;49604;57510;59530;59603;61136 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:54928752-54938880&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.851851851852 1.22495274102 -4.72044444444 0.7958 -6.83665 2.11620555556 -0.0303024729475 0.46535367536 60722 11571 11571;18396;32008;39029;41096;44426;51098;60722;67484;68999;69542;72970 -17.9184611111 0.6134 -15.2582888889 -2.66017222222 -0.00905161721499 0.216406144674 40357 25610 25610;38272;39151;40357;55810;56928;60868;66544;67144;68576;69896;70819 0.0 0.0 ENST00000394636.8 UTR5 not annotated putative regulatory region 61319 514814 chr16:71432299-71432325- NoOverlap chr16 71432299 71432325 - 6.71161086029 9 0.814146808745 1.44038905038 5.27122180992 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;71432298;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A71432299-71432325-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A71432299-71432325&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00538629335562 -0.0280246243205 0.751261182435 71466202 71466228 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;71466201;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A71432299-71432325-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A71466202-71466228&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PPIPDEVVVR Same 516465 chr16:71432299-71432325- 57660 57660 3659 0 1 71430668 71432325 1 1;1232;1578;61319 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:71430668-71432325&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.0 21.3161333333 0.9636 13.2343666667 8.08176666667 0.634322659315 0.654228158409 2373 1080 1080;1161;1704;2373 27.8226111111 0.7657 12.0686888889 15.7539222222 0.859252799396 0.800647810937 2283 1234 1234;1500;2160;2283 0.0 0.335661135253 chr19:3006420-3006669- protein-coding gene protein-coding gene ENSG00000260734 61358 549331 chr22:50674760-50674930+ NoOverlap chr22 50674760 50674930 + 1.82281752035 57 0.258974245716 1.90321051081 -0.0803929904574 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;50674759;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674760-50674930%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A50674760-50674930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00290673441646 -0.0281718584289 0.402034544028 51113188 51113358 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;51113187;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A50674760-50674930%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A51113188-51113358&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APPPWARPCPCAPRPGFPHPRRARPAPGTPGPRLLTPPPPPPPGPSPSPGRGPGKPGPWGGASAAVRGGAGSRAPAPEPR Same 550702 chr22:50674760-50674930+ 61435 61435 -77 0 54 50674240 50731692 61 61;231;251;326;382;407;433;624;686;687;691;709;730;740;788;877;908;1040;1358;15825;24643;30970;31264;37661;38360;39840;43446;47155;48234;49557;50391;51305;56385;61358 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:50674240-50731692&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.865497076023 0.86218487395 -2.81566315789 0.4608 -2.76199122807 -0.0536719298246 -0.040952879168 0.365728228719 67107 83 83;136;218;264;348;353;403;425;533;562;574;578;714;829;910;932;1048;1078;1264;5116;11392;12843;28467;40396;50878;52550;54153;56182;56829;58717;60358;63580;67107;70313 -7.73110701754 0.4068 -5.56199649123 -2.16911052632 -0.0335428465269 0.394559000816 60244 353 353;734;741;1081;1091;1092;1166;1200;1243;1295;1436;1468;1479;1491;1495;1587;1649;1699;1789;1874;2997;8264;21635;23692;30215;31967;32823;32919;45900;45907;47636;51219;54016;60244 0.0 0.114381304639 chr12:109768012-109769288+ ENST00000262795.5 NCintron known assembly issue SHANK3 has a known sequence error; the CDS cannot yet be annotated 61461 490391 chr12:3200691-3200723+ NoOverlap chr12 3200691 3200723 + 6.14617268707 11 0.577015751472 3.81168186428 2.3344908228 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;3200690;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3200691-3200723%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A3200691-3200723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000981384655442 -0.0285038142254 0.418733287016 3309857 3309889 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;3309856;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A3200691-3200723%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A3309857-3309889&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AESRAAPQSPPGAAGQK Same 492367 chr12:3200691-3200723+ 61712 61712 -251 0 350 3199732 3201193 479 479;12827;29069;61461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:3199732-3201193&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.909090909091 1.06944444444 0.579727272727 0.7995 2.90047272727 -2.32074545455 -0.0115637060902 0.0933083933341 48160 294 294;9159;28137;48160 -2.57007272727 0.4772 0.438045454545 -3.00811818182 -0.0346661960009 0.219979671435 61204 506 506;13691;30575;61204 0.0 0.0 ENST00000011898.9,ENST00000444315.6 UTR5intron,NCintron coding exon(s) TSPAN9 alternative 5' exon 61491 476953 chr10:23173438-23173509+ NoOverlap chr10 23173438 23173509 + 2.79735833934 24 0.831286717021 0.405399965743 2.3919583736 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;23173437;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23173438-23173509%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A23173438-23173509&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00525480275506 -0.0285871614823 0.592034139189 23462367 23462438 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;23462366;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A23173438-23173509%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A23462367-23462438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAAQVRAGAAFDSIQFTTGRACRCR Same 478848 chr10:23173438-23173509+ 60758 60758 733 0 873 23173215 23174753 1346 1346;12304;15950;27589;28990;57664;61491 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:23173215-23174753&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.625 1.28063241107 -4.11424166667 0.9328 -3.39412916667 -0.7201125 -0.0711148729668 0.26274695432 73112 13233 13233;19886;24016;28278;48646;49514;73112 -9.20905416667 0.5341 -11.4113291667 2.202275 -0.0359553581829 0.477895630713 62222 17548 17548;26780;29885;33897;60100;60114;62222 0.0 0.188826239314 chr20:59191020-59194757+ not annotated putative regulatory region 61514 528168 chr19:35775550-35775594+ NoOverlap chr19 35775550 35775594 + 4.28648661574 15 0.676005188067 0.532486701012 3.75399991473 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35775549;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35775550-35775594%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35775550-35775594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0147218847679 -0.0286735687024 0.67327117292 36266452 36266496 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36266451;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35775550-35775594%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36266452-36266496&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHGQPLGAGSAAARARLAPSPLCRHGGGSGDENGER Same 529617 chr19:35775550-35775594+ 62328 62328 -814 0 630 35767600 35790402 970 970;24953;37997;48990;61514;64238;71528 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35767600-35790402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 1.265625 -3.91688666667 0.8579 -8.46311333333 4.54622666667 -0.0242852968261 0.648192604107 57014 432 432;4773;28957;32900;57014;70882;72541 -7.63707333333 0.4263 -12.76172 5.12464666667 -0.0205776485704 0.548595767744 48569 633 633;9309;48569;62013;62367;64507;71253 0.0 0.0 ENST00000378944.9,ENST00000590893.5,ENST00000589133.5 UTR5,NC,NCintron coding exon(s) PROSER3 retained intron CDS 61691 573879 chr6:15245274-15245330- NoOverlap chr6 15245274 15245330 - 3.46127365137 19 0.558837583774 2.5762947735 0.884978877871 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;15245273;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245274-15245330-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A15245274-15245330&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00933282675634 -0.0293039854361 0.346658104053 15245505 15245561 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;15245504;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15245274-15245330-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A15245505-15245561&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ATLLEAGSGLARGACGPRARNSPRRPSSAPR Same 574908 chr6:15245274-15245330- 61927 61927 -236 0 1766 15244943 15246114 2604 2604;15135;20464;24558;26329;27078;34912;61691;69748 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:15244943-15246114&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.754385964912 1.125 -0.354047368421 0.6843 -1.15117368421 0.797126315789 -0.0284907143249 0.368131063285 59595 9551 9551;16260;24695;37413;40709;45352;56150;59595;63982 -5.94940526316 0.3736 -5.24176842105 -0.707636842105 -0.0380577183638 0.347997882373 63783 10022 10022;12289;27835;30484;54557;56016;61735;63783;63901 0.0 0.0 not annotated putative regulatory region 61724 498379 chr13:51451954-51452061+ NoOverlap chr13 51451954 51452061 + 0.996674980968 36 0.378013021032 -1.45429987331 2.45097485428 ENST00000311234.8,ENST00000398119.6,ENST00000442263.4,ENST00000483288.5,ENST00000485178.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51451953;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51451954-51452061%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51451954-51452061&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00451261124185 -0.0294325599609 0.680561375107 52026090 52026197 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;52026089;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51451954-51452061%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A52026090-52026197&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGKGEGEGCYLDSIGRLFESDQHIPVSSAGRVPGTELR Same 500393 chr13:51451954-51452061+ 57062 57062 4662 0 1692 51451954 51453308 2509 2509;31159;43962;47923;61724;62277 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51451954-51453308&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62037037037 0.6 -4.54824722222 0.683 -7.15536388889 2.60711666667 -0.0560406493676 0.566109309187 72100 13006 13006;20772;28117;30456;57539;72100 -15.0708416667 0.7614 -29.8475166667 14.776675 0.134638915095 0.934216933574 8845 Best 8845 8845;20580;21846;25121;49423;71224 0.0 0.0761978933299 chr12:57737079-57738246- ENST00000311234.8,ENST00000461515.5 AntiCDS,AntiNC not annotated putative regulatory region 61747 530312 chr19:15432345-15432536- NoOverlap chr19 15432345 15432536 - 1.67325153202 64 0.282638570993 1.30047815898 0.372773373034 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15432344;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432345-15432536-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15432345-15432536&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00320455493703 -0.0295284510262 0.470725808055 15543156 15543347 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15543155;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15432345-15432536-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15543156-15543347&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APAGAPPPSPPSPGPAAPPAPPPPPPPPPPPPPPPPPPPPPRDGPKAEPEPGPGPASAPAPGKSPRLGGCGEGKVGIPPAGAAAPDAFRPVCGTPPSPRPFSCVGPGPSVAAR Same 531775 chr19:15432345-15432536- 60884 60884 863 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.8125 0.988704318937 -3.667165625 0.4885 -3.82099375 0.153828125 -0.0385928956772 0.358103915384 65756 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -7.57836875 0.2986 -8.3223515625 0.7439828125 -0.0344622269281 0.521028608333 61022 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.105369539915 chr19:58350370-58350651- ENST00000599686.3,ENST00000263381.11,ENST00000599910.6 UTR5,CDSintron,UTR5intron coding exon(s) WIZ 2 cassette exons 61784 502133 chr14:75281589-75281681+ NoOverlap chr14 75281589 75281681 + 2.25089997726 31 0.954109229985 -0.0738935213416 2.3247934986 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;75281588;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75281589-75281681%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A75281589-75281681&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0346012231629 -0.0296855844279 0.635129187748 75748292 75748384 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;75748291;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75281589-75281681%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A75748292-75748384&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPCVDSSPYLFRRCSKTHGVCIVPSDTSESW Same 504035 chr14:75281589-75281681+ 61483 61483 301 0 456 75277155 75281681 653 653;2707;13175;15627;32302;36623;37128;61784;65414 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:75277155-75281681&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.494623655914 0.352272727273 -2.8931516129 0.9943 -2.88366774194 -0.00948387096774 -0.0698349268017 0.344928433128 73058 3768 3768;6703;12830;13388;17137;39238;49903;64236;73058 -12.1114 0.7142 -15.0914677419 2.98006774194 -0.0413809385115 0.522803106206 66250 9152 9152;14942;21009;33752;35396;56305;59433;66250;68586 0.0 0.0 ENST00000303562.8 UTR3 not annotated putative regulatory region 61791 582006 chr7:100891059-100891088- NoOverlap chr7 100891059 100891088 - 6.32435002327 10 0.670405127031 1.38120025992 4.94314976335 ENST00000302913.8,ENST00000411582.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;100891058;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100891059-100891088-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A100891059-100891088&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0128582336302 -0.0297076687337 0.733246007455 100488680 100488709 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;100488679;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A100891059-100891088-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A100488680-100488709&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PRRLPAPAQASPMGR Same 582966 chr7:100891059-100891088- 62331 62331 -540 0 402 100882699 100896048 564 564;2139;2309;3733;10134;33066;33794;47001;47408;61791 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:100882699-100896048&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.733333333333 0.267857142857 2.23576 0.9769 2.1132 0.12256 -0.0188915384632 0.240113892595 53395 1085 1085;2762;12277;14242;15089;33604;35393;48431;52932;53395 -3.63257 0.4343 -2.85869 -0.77388 -0.0338018303017 0.291671422879 60478 1829 1829;3172;9515;15507;19629;23787;40273;49567;60478;62610 0.0 0.0 ENST00000302913.8,ENST00000241069.9,ENST00000440755.5 CDS,CDSintron,NCintron pseudo-exon UFSP1 is a retrogene that has apparently evolved to use a downstream ATG, so this is 5' pseudo-exon sequence 61815 560729 chr4:185071583-185071645+ NoOverlap chr4 185071583 185071645 + 3.17273806816 21 0.894652439445 0.376999991281 2.79573807688 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;185071582;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A185071583-185071645%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A185071583-185071645&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00572597703711 -0.0297743393814 0.617810771128 185992737 185992799 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;185992736;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A185071583-185071645%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A185992737-185992799&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TGKSVWAALRSLPLYSCGSEDYGASSTR Same 561717 chr4:185071583-185071645+ 60598 60598 1217 0 3332 185071430 185071645 4626 4626;13043;31204;57826;61815 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:185071430-185071645&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.603174603175 0.352941176471 3.61771904762 0.9984 1.07458095238 2.54313809524 0.214090188118 0.542245856394 8229 5256 5256;7014;8229;65721;70306 -3.8726952381 0.9076 -2.7063 -1.1663952381 -0.0217715582184 0.346035749705 49583 26011 26011;49583;61981;65284;66794 0.0 0.0 ENST00000509017.5 NC not annotated potentially spurious 61857 530328 chr19:15449645-15449767- NoOverlap chr19 15449645 15449767 - 2.23840725277 41 0.395487423403 1.44853417321 0.789873079556 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15449644;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15449645-15449767-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15449645-15449767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00964818188408 -0.0298884769845 0.478593742103 15560456 15560578 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15560455;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15449645-15449767-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15560456-15560578&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWGGAVAGRGRPRAGPGQAGPPGAGAGAGPSGAGPGRGRGR Same 531791 chr19:15449645-15449767- 60714 60714 1143 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.90243902439 0.728888888889 1.20244390244 0.4229 0.0814414634146 1.12100243902 -0.00283031794272 0.522257541119 42963 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -2.26542682927 0.2526 -3.63165121951 1.36622439024 -0.0145026161824 0.537632637189 43942 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.0864142052447 chr9:133992075-133992278- ENST00000263381.11 UTR5intron coding exon(s) WIZ 2 cassette exons 61923 537078 chr2:230990690-230990731+ NoOverlap chr2 230990690 230990731 + 4.77606429373 14 0.546956370097 2.61679278208 2.15927151165 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;230990689;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230990690-230990731%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A230990690-230990731&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00510444013727 -0.0300978519124 0.449548379036 231855405 231855446 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;231855404;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A230990690-230990731%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A231855405-231855446&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EAPGAPPGTPTSAAEDTASAR Same 538448 chr2:230990690-230990731+ 61819 61819 104 0 389 230990378 230991124 544 544;1686;3814;7506;61923 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:230990378-230991124&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.785714285714 0.473684210526 -8.99987142857 0.6369 -6.11019285714 -2.88967857143 0.0334802285806 0.169587856553 27472 581 581;2118;2325;2832;27472 -9.92757142857 0.262 -5.99831428571 -3.92925714286 0.000264529092236 0.197403100128 35218 3158 3158;3262;3882;4170;35218 0.0 0.0 ENST00000414876.5 AntiNCintron coding exon(s) SPATA3 alternative first exon 62115 518004 chr17:48313233-48313286+ NoOverlap chr17 48313233 48313286 + 3.77343338397 18 0.951403406153 0.706872218185 3.06656116578 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48313232;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48313233-48313286%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48313233-48313286&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.000596696494903 -0.0308290031171 0.620754982033 46390595 46390648 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46390594;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48313233-48313286%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46390595-46390648&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPMRSPSDKFHHNYSPFHLS Same 519405 chr17:48313233-48313286+ 63289 63289 -1174 0 10925 48307328 48313286 16723 16723;17599;22434;62115;67342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48307328-48313286&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.613636363636 2.76525 0.998 -1.23197777778 3.99722777778 0.175349849291 0.645101150894 9986 Best 9986 9986;10392;16724;44437;45878 -8.91461111111 0.67 -11.3197555556 2.40514444444 -0.0372770914357 0.452751443993 63179 16697 16697;17787;63179;68455;70554 0.0 0.0 ENST00000336915.10,ENST00000581400.2 AntiCDSintron,AntiNCintron not annotated potentially spurious 62142 506366 chr15:40323638-40323778+ NoOverlap chr15 40323638 40323778 + 1.41468936205 47 0.50426132536 -0.484136178138 1.89882554019 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;40323637;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323638-40323778%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A40323638-40323778&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0937595966754 -0.030916828565 0.651302193845 40615839 40615979 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;40615838;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323638-40323778%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A40615839-40615979&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAAPSSALPAPCCRRARRGSRAGAERAVRAATGDQAAGGRAGGGGARGGVAADGDAEPGGCGGCGGCGCGGGGEAADGPAAAAALAAVTGPGPGGGCSNAVAGCGR Same 508077 chr15:40323638-40323778+ 62839 62839 -697 0 1677 40313687 40324514 2488 2488;29639;48301;50245;50817;59923;62142;66647;67529;68396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:40313687-40324514&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.872340425532 1.25747986191 -1.21314042553 0.5016 -2.85709148936 1.64395106383 -0.0241807498741 0.554306968888 56933 2234 2234;17663;29719;32124;51811;55466;56351;56933;64873;66727 -5.03682765957 0.3663 -5.82079361702 0.783965957447 -0.0135648774456 0.516595763267 43273 2097 2097;14593;22796;39510;43273;44464;48619;53899;64626;73766 0.0 0.197644180051 chr3:169821922-169822941+ not annotated putative regulatory region 62178 529177 chr19:51691060-51691191+ NoOverlap chr19 51691060 51691191 + 1.99278636209 44 0.470945088329 0.773534112356 1.21925224973 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51691059;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51691060-51691191%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51691060-51691191&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0330176973748 -0.0310934533519 0.549845471739 52194313 52194444 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52194312;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51691060-51691191%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52194313-52194444&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELAVDPSPAPASPFPPPPLSRLSSPSSGRYPSPGPLLKPPPPHPQLQTWLELRGGGREGR Same 530636 chr19:51691060-51691191+ 62083 62083 95 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.712121212121 0.357142857143 -2.64306136364 0.7101 -4.40515681818 1.76209545455 -0.0398664467446 0.535401866495 66485 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 -6.94501818182 0.3555 -7.509125 0.564106818182 -0.0386892147262 0.494308864527 64269 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.150431666433 chr19:43799706-43799769- ENST00000602324.1 AntiNCintron protein-coding gene protein-coding gene ENSG00000182310 62190 468537 chr1:202828113-202828148+ NoOverlap chr1 202828113 202828148 + 4.1414499109 12 0.222681264464 -5.10297500047 9.24442491137 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;202828112;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A202828113-202828148%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A202828113-202828148&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00521200525874 -0.0311445272333 1.04524109916 202797241 202797276 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;202797240;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A202828113-202828148%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A202797241-202797276&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSMGGGGLQSPILCRHFLFYR Same 470409 chr1:202828113-202828148+ 54823 54823 7367 0 315 202825246 202828148 422 422;1273;1512;62190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:202825246-202828148&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 3.8703 0.4211 -9.52074166667 13.3910416667 0.0555124662123 1.04861744638 22050 959 959;1457;2051;22050 3.8703 0.1316 -9.52074166667 13.3910416667 0.0724811132126 0.861738221476 14788 1340 1340;1481;1898;14788 0.0 0.0 pseudogene unitary pseudogene ENSG00000184774 62218 577674 chr7:27147648-27147710+ NoOverlap chr7 27147648 27147710 + 3.18290010237 21 0.743330172536 0.813814313639 2.36908578873 ENST00000222728.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27147647;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147648-27147710%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27147648-27147710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00459200792744 -0.0312435511449 0.561523487296 27187267 27187329 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27187266;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147648-27147710%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27187267-27187329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EGPQRVIASLVEGQLAQEGVLAAGK Same 578713 chr7:27147648-27147710+ 63116 63116 -898 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.444705882353 0.18179047619 0.983 -1.54466666667 1.72645714286 0.0297986047587 0.464257368891 28775 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -20.3829904762 0.9161 -34.1927571429 13.8097666667 -0.0118605471388 0.723659646452 42069 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222728.3,ENST00000467897.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 62257 509995 chr15:95464621-95464710- NoOverlap chr15 95464621 95464710 - 2.66891336661 30 0.963281706976 1.58959989945 1.07931346716 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;95464620;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95464621-95464710-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A95464621-95464710&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0585990759058 -0.0314001086995 0.458740438304 96007850 96007939 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;96007849;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95464621-95464710-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A96007850-96007939&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KFSPGLFRLS*IYKTADIISGRQQCANSAVTSIFFAFY Same 511730 chr15:95464621-95464710- 60651 60651 1606 11 5012 95454977 95464832 6935 6935;26656;62257;72347 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:95454977-95464832&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.5 0.9 -3.78192333333 0.9993 -1.76272 -2.01920333333 -0.0911743411375 0.181327636901 73588 30292 30292;68270;69892;73588 -11.81707 0.9028 -6.85809333333 -4.95897666667 -0.0569761824082 0.223565053885 73140 17131 17131;65875;68290;73140 0.0 0.0 ENST00000554412.2,ENST00000554837.5 NCintron,AntiNCintron not annotated potentially spurious 62264 502612 chr14:96086221-96086256+ NoOverlap chr14 96086221 96086256 + 4.04166660706 12 0.377383586379 1.64345834653 2.39820826054 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;96086220;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A96086221-96086256%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A96086221-96086256&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00709819900407 -0.0314149685771 0.469292668114 96552558 96552593 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;96552557;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A96086221-96086256%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A96552558-96552593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GMAGGVAVSPGESPASCWVSSLMLS Same 504515 chr14:96086221-96086256+ 61445 61445 819 0 527 96086221 96086732 787 787;62264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:96086221-96086732&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.611111111111 0.0 -6.91334166667 0.4727 -5.35400833333 -1.55933333333 0.0228530265628 0.201395257738 31442 1017 1017;31442 -6.91334166667 0.1478 -5.35400833333 -1.55933333333 0.00213499943571 0.272295397123 34300 1382 1382;34300 0.0 0.0 ENST00000553764.1 NCintron protein-coding gene protein-coding gene ENSG00000227051 62277 498380 chr13:51452169-51452312+ NoOverlap chr13 51452169 51452312 + 1.41534377646 48 0.324683057399 0.000906229795267 1.41443754667 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;51452168;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51452169-51452312%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A51452169-51452312&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0154048102512 -0.0314702486333 0.588072803414 52026305 52026448 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;52026304;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A51452169-51452312%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A52026305-52026448&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGEGAPSGPAAPTVPHTQRPPLHAVPHTQIAPHTPPGAGARAPAEPGSQRPPARAVGEGVPEPGSSR Same 500394 chr13:51452169-51452312+ 58819 58819 3458 0 1692 51451954 51453308 2509 2509;31159;43962;47923;61724;62277 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:51451954-51453308&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.826388888889 0.857653365098 -1.41375625 0.5173 -5.64238125 4.228625 0.0254529619763 0.786077999163 30456 13006 13006;20772;28117;30456;57539;72100 -2.02709583333 0.2419 -6.8486 4.82150416667 0.0416947718228 0.702516588131 20580 8845 8845;20580;21846;25121;49423;71224 0.0 0.102204157865 chr12:57737079-57738246- ENST00000461515.5,ENST00000311234.8,ENST00000469430.5 AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 62478 628807 chr12:123762553-123762579+ Extension chr12 123762553 123762579 + 1.84804450803 9 0.314774971813 -1.58773332503 3.43577783306 chr12:123762334-123762579+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;123762552;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A123762553-123762579%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A123762553-123762579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.148691803565 -0.0322006739365 0.602868647986 124247100 124247126 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;124247099;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A123762553-123762579%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A124247100-124247126&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TMVPEEVEVEIGEPRRAAPFPGLPSCPSRPLR Same 629474 chr12:123762553-123762579+ 55793 55793 6685 0 37 123762213 123762579 39 39;24095;62478 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:123762213-123762579&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 1.2 4.54787777778 0.3571 0.622066666667 3.92581111111 -0.00601931230974 0.538103782701 44723 899 899;44723;45787 4.02042222222 0.2581 1.0859 2.93452222222 -0.0153731838884 0.422638614325 44601 2014 2014;29676;44601 0.0 0.0 ENST00000409039.7,ENST00000614082.1 ExtensionMid,UTR5intron coding exon(s) DNAH10 5' extension 62488 529170 chr19:51689195-51689422+ NoOverlap chr19 51689195 51689422 + 1.35122764486 76 0.315787867471 0.665523705514 0.685703939342 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51689194;228;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51689195-51689422%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51689195-51689422&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0279265962255 -0.0322196084237 0.510544561019 52192448 52192675 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52192447;228;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51689195-51689422%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52192448-52192675&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLWPGLPLPLPPPPRGWMEFFPLDLGQLRGRGEARPDWAGRWGGAGAGGPLGRGLVRRPRSRRGPGRGSPGPQSRGGGDGRRESGR Same 530629 chr19:51689195-51689422+ 58967 58967 3521 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.780701754386 0.5625 -3.41608157895 0.5072 -3.93898684211 0.522905263158 -0.0353152523762 0.380159100713 63884 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 -7.94313552632 0.3403 -8.52869473684 0.585559210526 -0.0200163079512 0.514917808435 48105 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.101034850139 chr11:65607270-65607513- ENST00000602324.1 AntiNCintron protein-coding gene protein-coding gene ENSG00000182310 62577 518070 chr17:48597102-48597170+ NoOverlap chr17 48597102 48597170 + 2.64226961719 23 0.824872869127 -0.549456530291 3.19172614748 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48597101;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48597102-48597170%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48597102-48597170&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0627664553008 -0.0326052975782 0.688667217261 46674464 46674532 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46674463;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48597102-48597170%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46674464-46674532&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LMDISWDLRPTNNPT*DPAPVSPSLAPPAPSLFLPLIPPPSSDYHPFPGASSCPSSPPTGK Same 519471 chr17:48597102-48597170+ 61848 61848 729 8 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.507246376812 0.482517482517 -3.58893043478 0.9911 -3.7858173913 0.196886956522 -0.0699415865973 0.331980212187 73064 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -8.35109565217 0.4714 -11.8027173913 3.45162173913 -0.02338305928 0.528610067094 51043 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0920681843703 chr17:7847546-7849728+ ENST00000429755.8,ENST00000470193.3,ENST00000225648.3,ENST00000552000.2 NCintron,AntiNC,AntiCDSintron,AntiNCintron not annotated putative regulatory region 62579 574590 chr6:34237340-34237462- NoOverlap chr6 34237340 34237462 - 1.37209266379 41 0.307417187241 0.364592711373 1.00749995241 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34237339;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237340-34237462-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34237340-34237462&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00108917328145 -0.0326098538055 0.508367309476 34205117 34205239 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34205116;123;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237340-34237462-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34205117-34205239&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPPPPPARAAPAWE*SRRRALQPRAARRRGDVRAGARAPPSAAAAAGPGDDSPR Same 575622 chr6:34237340-34237462- 59432 59432 3147 11 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.869918699187 1.07442348008 0.944992682927 0.2063 -0.189792682927 1.13478536585 0.0162280434572 0.521078648126 34108 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -1.97239268293 0.1898 -3.40714878049 1.43475609756 -0.0319468194376 0.541340000781 58879 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0584142449358 chr6:122779795-122779867+ ENST00000311487.9,ENST00000478214.1 AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000186577 62647 546246 chr21:8214038-8214121+ NoOverlap chr21 8214038 8214121 + 2.79413573231 28 0.532613434479 2.55609282851 0.238042903798 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8214037;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8214038-8214121%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8214038-8214121&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000100579990199 -0.0328895999053 0.334468682887 113498 113581 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;113497;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8214038-8214121%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A113498-113581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAGHVAYGRPAPRRRSWGAQVLLIEAQPVDGVRPVAAPGAPGPGLPGVGLLGNAAQSGW Same 547660 chr21:8214038-8214121+ 62963 62963 -316 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.72619047619 0.905172413793 -1.21228571429 0.2618 -0.0774571428571 -1.13482857143 -0.0057871890866 0.252942690036 44587 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -1.91707142857 0.3851 -5.32489642857 3.407825 0.0466604648554 0.578696548384 19413 Best 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0238539361006 chr11:67365136-67365630- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 62727 501028 chr14:28767687-28767881+ NoOverlap chr14 28767687 28767881 + 1.00631233821 65 0.324254684813 -0.528992287929 1.53530462613 ENST00000313071.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28767686;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28767687-28767881%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28767687-28767881&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0406524974857 -0.0331887084057 0.625516812463 29236893 29237087 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29236892;195;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28767687-28767881%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29236893-29237087&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGAGARRAGREGEGRRRRGGGEEGGGRGRQGRGGGQGGREEERQVREAAVQLQRAHHDGHPAEPREAAHAQR Same 502920 chr14:28767687-28767881+ 56470 56470 6257 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.702564102564 1.06028368794 -4.30774 0.8413 -5.29893384615 0.991193846154 -0.0591710409637 0.416662790089 72426 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -20.5636615385 0.835 -27.8201261538 7.25646461538 -0.0203083854672 0.700012670549 48332 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.14630809743 chr9:116800-118119- ENST00000313071.6 CDS not annotated putative regulatory region 62730 558851 chr4:41752084-41752110+ NoOverlap chr4 41752084 41752110 + 6.27968872918 9 0.822005205022 0.157722221739 6.12196650744 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41752083;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41752084-41752110%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41752084-41752110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0451722447534 -0.0331929816233 0.846342616169 41754101 41754127 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41754100;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41752084-41752110%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41754101-41754127&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWARPEPQPQRPVLFQLCFLHASSPLK Same 559834 chr4:41752084-41752110+ 59353 59353 3377 0 2000 41745545 41752242 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.814814814815 0.241071428571 6.12592222222 0.989 -4.29272222222 10.4186444444 0.253810020198 0.969082921996 6861 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 -6.81566666667 0.6579 -9.31432222222 2.49865555556 -0.0486615814482 0.40218873884 70799 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0 ENST00000508038.1 NCintron not annotated putative regulatory region 62741 588110 chr8:142573799-142573825- NoOverlap chr8 142573799 142573825 - 6.44888897737 9 0.674799725338 -0.178299912148 6.62718888952 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;142573798;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142573799-142573825-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A142573799-142573825&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0482446442475 -0.0332541610742 0.889325045846 143655160 143655186 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;143655159;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A142573799-142573825-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A143655160-143655186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WTLPLWKALAANLQLAR Same 589055 chr8:142573799-142573825- 63774 63774 -1033 0 902 142572180 142575904 1386 1386;1889;2097;3879;8408;13162;50093;62741 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:142572180-142575904&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.0 7.64692222222 0.8639 -6.52792222222 14.1748444444 0.215175826249 1.03387196379 8183 1388 1388;1898;2170;2516;2563;4680;8183;28509 2.34688888889 0.4301 -16.7287 19.0755888889 0.159946008998 0.994132434143 7574 2925 2925;3250;3308;3738;3861;3909;7574;37771 0.0 0.138936002909 chr17:28632049-28632239- pseudogene extension MROH4P 6 new exons at 5' end 62875 482201 chr10:113125658-113125720- NoOverlap chr10 113125658 113125720 - 2.94582853715 21 0.914789262008 -0.604628687813 3.55045722496 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113125657;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125658-113125720-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113125658-113125720&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0647231316505 -0.0337935210923 0.715091503565 114885417 114885479 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114885416;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125658-113125720-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114885417-114885479&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSCHLAQL*CFGR*LWKALYYCIK Same 484125 chr10:113125658-113125720- 62655 62655 220 12 719 113118964 113126911 1110 1110;6516;16816;37245;38490;54651;58469;62875;67669;70173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118964-113126911&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.539682539683 0.442105263158 -3.02265714286 0.9875 -3.87964761905 0.85699047619 -0.0566521826697 0.379087036736 72176 4406 4406;18572;33940;40718;63931;65767;72176;72358;72407;73429 -5.43218095238 0.9224 -5.22007142857 -0.21210952381 -0.0265043939341 0.380140695966 53928 6655 6655;10141;25415;26332;35901;38764;51629;51984;53928;72240 0.0 0.0 ENST00000346198.5 AntiCDSintron not annotated putative regulatory region 63026 559342 chr4:82285263-82285295+ NoOverlap chr4 82285263 82285295 + 3.80370003527 11 0.352880140383 1.17252720757 2.6311728277 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;82285262;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A82285263-82285295%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A82285263-82285295&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0200341145874 -0.0344169326209 0.49251044561 83206416 83206448 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;83206415;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A82285263-82285295%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A83206416-83206448&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTQAPAPREIPPPRETPPPQEAPPPR Same 560327 chr4:82285263-82285295+ 61661 61661 1365 0 540 82285065 82295757 819 819;2323;4757;63026 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:82285065-82295757&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.757575757576 0.970588235294 -2.0543 0.3797 0.626718181818 -2.68101818182 0.0213926938009 0.0881815210392 32061 1977 1977;2332;2366;32061 -2.0543 0.1187 0.626718181818 -2.68101818182 -0.00098712703795 0.231071721062 35871 3193 3193;3988;4126;35871 0.0 0.0 pseudogene unitary pseudogene ENSG00000284516 63060 505955 chr15:21609137-21609181+ NoOverlap chr15 21609137 21609181 + 3.72345341643 15 0.431097886625 0.621019990246 3.10243342618 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;21609136;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21609137-21609181%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A21609137-21609181&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00512737006583 -0.0345504519393 0.596457494381 22332445 22332489 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;22332444;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A21609137-21609181%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A22332445-22332489&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDSNVTELVLLGLSSSWELQLFLLLLFLFFYIAIVLGNLLIVVTVQAHAHLLQSPMYYFLGHLSFIDLCLSCVTLPK Same 507667 chr15:21609137-21609181+ 61149 61149 1911 0 509 21609137 21614980 756 756;2089;3812;4681;5034;9481;63060 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:21609137-21614980&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488888888889 0.0 16.12446 0.878 5.14046666667 10.9839933333 0.638602863677 0.977154700557 2359 347 347;392;1003;1013;1063;1118;2359 12.2705666667 0.8251 -16.8105666667 29.0811333333 0.779513057244 1.04967997828 2551 949 949;977;1339;1358;1773;2103;2551 0.988290189613 chr14:19747428-19748369+ 0.550655465481 chr14:19747428-19748369+ ENST00000625989.2 NC pseudogene (shared cluster) two olfactory receptor pseudogenes in close proximity (ENSG00000285491 & ENSG00000285116) 63061 505967 chr15:22044494-22044538+ NoOverlap chr15 22044494 22044538 + 3.72345341643 15 0.431097886625 0.621019990246 3.10243342618 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;22044493;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A22044494-22044538%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A22044494-22044538&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00512737006583 -0.0345504519393 0.596457494381 22332445 22332489 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;22332444;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A22044494-22044538%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A22332445-22332489&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QDSNVTELVLLGLSSSWELQLFLLLLFLFFYIAIVLGNLLIVVTVQAHAHLLQSPMYYFLGHLSFIDLCLSCVTLPK Same 507678 chr15:22044494-22044538+ 61150 61150 1911 0 2707 22044494 22044847 3813 3813;5035;63061 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:22044494-22044847&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.488888888889 0.0 16.10138 0.889 5.13768666667 10.9636933333 0.654762754052 0.976741069527 2281 320 320;1022;2281 12.8876933333 0.7421 -18.0707 30.9583933333 0.840627142583 1.03118157559 2349 1296 1296;1328;2349 0.976061627087 chr14:19747428-19748369+ 0.591831072494 chr14:19747428-19748369+ ENST00000558896.5,ENST00000557817.4 NC,NCintron pseudogene extension olfactory receptor, family 4, subfamily Q, member 3 (OR4Q3) pseudogene (ENSG00000285135) 63095 501030 chr14:28768155-28768259+ NoOverlap chr14 28768155 28768259 + 2.05978006124 35 0.564475253136 0.372494338879 1.68728572237 ENST00000313071.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28768154;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28768155-28768259%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28768155-28768259&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0528859668957 -0.0346758271546 0.573132936496 29237361 29237465 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29237360;105;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28768155-28768259%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29237361-29237465&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CAPHLHRPHLHGPRRLPLLAHVALPVPAPPPRQQHFELQR Same 502922 chr14:28768155-28768259+ 64972 64972 -1877 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.735 -0.161102857143 0.9565 -3.17485428571 3.01375142857 0.109585481017 0.662539377905 14909 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -27.33058 0.9783 -29.11134 1.78076 -0.0334977982101 0.336126356188 60202 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.16689409951 chr5:73446965-73448362- ENST00000313071.6 CDS not annotated putative regulatory region 63100 466591 chr1:110229471-110229497+ NoOverlap chr1 110229471 110229497 + 6.35171108776 9 0.725841153582 -0.122166686588 6.47387777434 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;110229470;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A110229471-110229497%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A110229471-110229497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0506969915814 -0.0347033141192 0.877472186848 110772093 110772119 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;110772092;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A110229471-110229497%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A110772093-110772119&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAASLSTLLPLLLR Same 468451 chr1:110229471-110229497+ 63049 63049 51 0 138 110228004 110230556 166 166;58328;63100;67233 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:110228004-110230556&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 0.818181818182 0.632177777778 0.9231 -1.9958 2.62797777778 -0.0451835084169 0.440396769872 69315 112 112;26525;33496;69315 -8.27134444444 0.4507 -10.4471444444 2.1758 -0.0332186338489 0.384758046301 59966 695 695;10859;41544;59966 0.0 0.0 ENST00000369787.7,ENST00000412512.2 CDSintron,NCintron coding exon(s) KCNC4 alternative final exon 63184 518100 chr17:48615465-48615539+ NoOverlap chr17 48615465 48615539 + 2.75731998175 25 0.627460746166 1.04330806494 1.71401191682 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48615464;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48615465-48615539%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48615465-48615539&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0214442840867 -0.0350836901504 0.509258448891 46692827 46692901 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46692826;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48615465-48615539%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46692827-46692901&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SNTFADHPQRLMWGSHGKKHAHTHTQRARR Same 519501 chr17:48615465-48615539+ 64982 64982 -1798 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.56 0.868055555556 4.2736 0.9456 -0.088468 4.362068 0.325791499599 0.738257993631 5089 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -8.445588 0.647 -10.016852 1.571264 -0.033039879444 0.461674352194 59798 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000567101.2 AntiNCintron not annotated putative regulatory region 63301 475823 chr1:213996455-213996502- NoOverlap chr1 213996455 213996502 - 4.26288741827 16 0.935819600214 1.5117687583 2.75111865997 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;213996454;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213996455-213996502-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A213996455-213996502&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0229509700005 -0.0355824194904 0.554813244731 214169798 214169845 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214169797;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213996455-213996502-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214169798-214169845&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARQLGTAQESRDPGQQNK Same 477713 chr1:213996455-213996502- 63102 63102 199 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.625 0.434389140271 -0.31416875 1.0 -2.2851625 1.97099375 -0.00134640896071 0.447148508477 42175 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -6.48578125 0.8616 -7.91828125 1.4325 -0.0361522646158 0.411877831717 62374 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000261454.8 AntiUTR5 not annotated potentially spurious 63382 636595 chr14:73617145-73617174+ Extension chr14 73617145 73617174 + 5.79509007931 10 0.827084763867 0.278920160234 5.51616991907 chr14:73617145-73617189+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;73617144;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73617145-73617174%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A73617145-73617174&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0364610632168 -0.0359575456395 0.803956193689 74083849 74083878 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;74083848;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A73617145-73617174%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A74083849-74083878&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FEDLPEDLNDVHLEYFEEAVDFMLQHPK Same 637242 chr14:73617145-73617174+ 60259 60259 3123 0 238 73612572 73617174 305 305;369;18695;18948;54211;63382 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:73612572-73617174&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.666666666667 7.50975 0.9053 -11.23744 18.74719 0.342708183346 0.987813091383 4788 503 503;685;4788;45597;60715;60824 49.97212 0.9067 -12.25011 62.22223 0.972685694546 0.966570323532 1540 1326 1326;1373;1540;31312;62655;73789 0.267506238098 chr14:73593702-73593904+ 0.362534794539 chr14:73573388-73573590+ ENST00000381139.1,ENST00000555011.2 Extension5p,AntiNC pseudo-exon ACOT6 untranscribed pseudo-exon 63391 479937 chr10:8055584-8055775- NoOverlap chr10 8055584 8055775 - 1.96178279351 64 0.665824320974 1.09114217077 0.870640622743 ENST00000346208.3,ENST00000379328.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8055583;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8055584-8055775-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8055584-8055775&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0445510497005 -0.035996404116 0.543267921296 8097547 8097738 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8097546;192;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8055584-8055775-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8097547-8097738&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLRRVHVGVAEARVVRVRVLPVEHGGVVVAHPARLVRRHLHGLGCARALSPGPEPARGEGGRSAWEVGGLLPSEGR Same 481845 chr10:8055584-8055775- 60859 60859 2532 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.765625 0.897867564534 -5.9851015625 0.9357 -6.4712171875 0.486115625 -0.116491453757 0.336813384733 73773 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -21.946625 0.7593 -26.1459078125 4.1992828125 -0.0630402374405 0.581643732788 73571 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 ENST00000346208.3 AntiCDS not annotated putative regulatory region 63394 522731 chr17:62966188-62966223- NoOverlap chr17 62966188 62966223 - 5.01798331738 12 0.461801581852 1.1129833733 3.90499994407 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;62966187;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A62966188-62966223-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A62966188-62966223&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0169662644131 -0.0360078946849 0.650834392186 61043549 61043584 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;61043548;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A62966188-62966223-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A61043549-61043584&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGGVAPSEAARSPAPSGLGWGGAR Same 524160 chr17:62966188-62966223- 62525 62525 869 0 24557 62966188 62966607 54817 54817;63394 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:62966188-62966607&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 0.861244019139 3.26178333333 0.3965 2.0592 1.20258333333 -0.00941200893331 0.340366211328 46752 Best 46752 46752;50486 1.93531666667 0.2945 0.864991666667 1.070325 -0.0133907918683 0.376746317329 43143 Best 43143 43143;53795 0.0 0.208232905167 chr11:14644076-14645053+ ENST00000582505.1 NCintron not annotated putative regulatory region 63398 512646 chr16:85169288-85169494+ NoOverlap chr16 85169288 85169494 + 1.18661303991 69 0.240424687328 1.54263334835 -0.356020308437 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;85169287;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85169288-85169494%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A85169288-85169494&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00966608704543 -0.0360238176397 0.367939224799 85202894 85203100 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;85202893;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A85169288-85169494%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A85202894-85203100&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPGALAAAPPRPAPPPGGARQARGGAAARGRAPAPAPAARRQTLRRAHMLQVGRGGGGLGGS*GRPGAR Same 514291 chr16:85169288-85169494+ 64507 64507 -1109 6 247 85169288 85171795 315 315;1225;4037;33765;48559;52041;63398 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:85169288-85171795&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.859903381643 1.10106382979 0.762368115942 0.2055 0.595385507246 0.166982608696 0.0121345479274 0.451762044941 35870 686 686;1182;1519;35870;37426;44051;65700 -3.3615115942 0.3669 -3.88194927536 0.520437681159 0.0295045482353 0.52489525414 23905 912 912;1310;2378;23905;34536;69575;73658 0.0 0.187990253577 chr2:73291457-73292781- coding exon(s) GSE1 5' extension 63429 547182 chr21:8395601-8395879- NoOverlap chr21 8395601 8395879 - 1.25659784482 93 0.222018932672 1.51920860781 -0.262610762991 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395600;279;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395601-8395879-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395601-8395879&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0210209591697 -0.036161090804 0.372710326449 155991 156269 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155990;279;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395601-8395879-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155991-156269&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGRTPPGLRLGGRRAPGGPCEGTPSRAPRGARRHPRGRLIGKRRSDRRSPGRNPGPQVRSKCR*SMCPAIHINSRS*LRSSSTHEPSDPPLRVVR Same 548586 chr21:8395601-8395879- 66154 66154 -2725 31 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.0972816657 -3.90760967742 0.2731 -5.2706483871 1.36303870968 -0.0567093097469 0.429910812401 72189 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -16.6152892473 0.5992 -17.8570860215 1.24179677419 -0.0376526649043 0.527657083844 63433 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0234252158717 chr1:6485324-6485443- ENST00000613359.1,ENST00000623860.2 AntiNC,AntiNCintron not annotated SSU-rRNA_Hsa 63430 547275 chr21:8439817-8440095- NoOverlap chr21 8439817 8440095 - 1.25659784482 93 0.222018932672 1.51920860781 -0.262610762991 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439816;279;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439817-8440095-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439817-8440095&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0210209591697 -0.036161090804 0.372710326449 155991 156269 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155990;279;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439817-8440095-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155991-156269&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGRTPPGLRLGGRRAPGGPCEGTPSRAPRGARRHPRGRLIGKRRSDRRSPGRNPGPQVRSKCR*SMCPAIHINSRS*LRSSSTHEPSDPPLRVVR Same 548678 chr21:8439817-8440095- 66155 66155 -2725 31 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.0972816657 -4.2990827957 0.2971 -5.01757956989 0.718496774194 -0.0654257526319 0.366323750546 72857 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -17.3313741935 0.5666 -16.6574473118 -0.67392688172 -0.0475261871294 0.458322130305 70260 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0238721764775 chr1:6485324-6485443- ENST00000619471.1 AntiNC not annotated SSU-rRNA_Hsa 63616 579344 chr7:128869294-128869329+ NoOverlap chr7 128869294 128869329 + 4.63944165409 12 0.444940362656 -1.11270000786 5.75214166194 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;128869293;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A128869294-128869329%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A128869294-128869329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0150518521296 -0.0369364817158 0.861007033166 128509348 128509383 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;128509347;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A128869294-128869329%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A128509348-128509383&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSGAGGAAPGTPAPR Same 580388 chr7:128869294-128869329+ 60145 60145 3471 0 172 128866410 128869879 206 206;588;599;60089;63616 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:128866410-128869879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.805555555556 0.519230769231 -0.8081 0.4761 -3.66275833333 2.85465833333 -0.0187908273061 0.489979674363 53327 402 402;800;1076;26130;53327 -1.305075 0.2604 -4.60978333333 3.30470833333 -0.0173601436693 0.468447813711 46080 19 19;145;1707;46080;51704 0.0 0.0941943071576 chr6:154733423-154733550+ ENST00000609480.2,ENST00000492679.5 NC,AntiNCintron protein-coding gene protein-coding gene ENSG00000272899 63662 503468 chr14:23352321-23352395- NoOverlap chr14 23352321 23352395 - 2.59884795666 25 0.548212100404 1.18924401283 1.40960394382 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23352320;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352321-23352395-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23352321-23352395&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.024046756202 -0.0371681339501 0.469525926243 23821530 23821604 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23821529;75;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23352321-23352395-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23821530-23821604&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGARAGGGGRRGRRRTGQQPVAGRAPRPPQL Same 505307 chr14:23352321-23352395- 64305 64305 -643 0 605 23352215 23352971 930 930;2839;33934;60530;60698;63662 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23352215-23352971&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.8 0.897129186603 -3.78848 0.8993 -6.939872 3.151392 -0.0475163296799 0.589061952888 70218 1342 1342;1960;18367;45222;70218;73449 -6.1235 0.469 -8.528308 2.404808 -0.0133256734872 0.5071425423 43094 3678 3678;4381;6108;16098;43094;60471 0.0 0.0805246249751 chr11:68750190-68750660- ENST00000206544.8,ENST00000474057.5 UTR5,NC under investigation SLC22A17 potential non-ATG start 63701 546382 chr21:8398719-8399027+ NoOverlap chr21 8398719 8399027 + 1.06808640468 103 0.183034782422 0.665494180854 0.402592223825 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398718;309;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398719-8399027%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398719-8399027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0197692813786 -0.0373320489684 0.459467840659 159122 159430 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159121;309;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398719-8399027%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159122-159430&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EARLAGVEPGVECECLVGHFW*AELALRDEPNAGLRRPMPTLIRPQKRCWLI*TAGRWPWKSESAKECVTTHLPNQLALKMDGAGASGPYPAVAGSREWTGAAGAAR Same 547795 chr21:8398719-8399027+ 63041 63041 660 53 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.621359223301 1.03103103103 -0.170815533981 0.2662 -0.222477669903 0.0516621359223 -5.67258100215e-06 0.405950435742 41512 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -4.74094368932 0.2213 -4.64246601942 -0.0984776699029 -0.0241520610967 0.500411764646 51711 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.117041985486 chr3:9841908-9842082- ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 63702 546443 chr21:8442948-8443256+ NoOverlap chr21 8442948 8443256 + 1.06808640468 103 0.183034782422 0.665494180854 0.402592223825 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442947;309;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442948-8443256%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442948-8443256&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0197692813786 -0.0373320489684 0.459467840659 159122 159430 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159121;309;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442948-8443256%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159122-159430&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EARLAGVEPGVECECLVGHFW*AELALRDEPNAGLRRPMPTLIRPQKRCWLI*TAGRWPWKSESAKECVTTHLPNQLALKMDGAGASGPYPAVAGSREWTGAAGAAR Same 547856 chr21:8442948-8443256+ 63042 63042 660 53 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.621359223301 1.03103103103 -0.1342 0.2675 -0.147441747573 0.0132417475728 0.000449278055633 0.403211020601 41298 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -3.7293 0.2441 -3.17298834951 -0.556311650485 -0.0131288660986 0.484155769262 42953 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 not annotated LSU-rRNA_Hsa 63710 574587 chr6:34236943-34236984- NoOverlap chr6 34236943 34236984 - 4.83417134626 14 0.766024697817 3.34872841835 1.48544292791 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34236942;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34236943-34236984-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34236943-34236984&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0339833257593 -0.0373600550245 0.361344335894 34204720 34204761 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34204719;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34236943-34236984-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34204720-34204761&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KPPERPRTHAFLEPRQR Same 575619 chr6:34236943-34236984- 62684 62684 1026 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.738095238095 1.23529411765 0.55035 0.7602 -3.30040714286 3.85075714286 0.000541289179084 0.59338047014 41250 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -7.40005714286 0.3813 -10.6795928571 3.27953571429 -0.0279558668882 0.468171469127 55245 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.269125767746 chr22:20241711-20243110- ENST00000447654.5 AntiUTR5 protein-coding gene protein-coding gene ENSG00000186577 63786 561532 chr4:41857471-41857566- NoOverlap chr4 41857471 41857566 - 2.54202498961 32 0.900459678035 1.76747812051 0.774546869099 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41857470;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41857471-41857566-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41857471-41857566&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0769999221333 -0.0376927923205 0.430365474842 41859488 41859583 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41859487;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41857471-41857566-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41859488-41859583&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SIHWKASSRSKSCSSEPACLVSEEITPQASQISDNFHK Same 562523 chr4:41857471-41857566- 61946 61946 1840 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.541666666667 0.442396313364 0.220953125 0.979 -1.02983125 1.250784375 0.0670493540638 0.488052917454 20130 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -6.59006875 0.8066 -7.503675 0.91360625 -0.0118190159506 0.474781903585 42046 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 not annotated putative regulatory region 63812 518083 chr17:48610556-48610633+ NoOverlap chr17 48610556 48610633 + 2.20665768018 26 0.612402063489 -0.529776981244 2.73643466143 ENST00000239165.8 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48610555;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48610556-48610633%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48610556-48610633&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0735752299294 -0.0377938054863 0.655497303031 46687918 46687995 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46687917;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48610556-48610633%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46687918-46687995&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASHPGVDPEVTLGRQVRVPLLLGARRLGGVAGTHPGEVLLK Same 519484 chr17:48610556-48610633+ 65807 65807 -1995 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.74358974359 0.945454545455 -4.06946923077 0.8926 -4.41991538462 0.350446153846 -0.0705551734648 0.352710089998 73092 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -20.2767153846 0.8914 -25.3711461538 5.09443076923 -0.0445526423613 0.481997907617 68459 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000239165.8,ENST00000567101.2 AntiCDS,AntiNCintron not annotated putative regulatory region 63841 574591 chr6:34237414-34237551- NoOverlap chr6 34237414 34237551 - 1.49069998154 46 0.32103986917 0.643378262003 0.847321719539 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34237413;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237414-34237551-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34237414-34237551&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0116716571814 -0.0378715445711 0.50389310484 34205191 34205328 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34205190;138;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34237414-34237551-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34205191-34205328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APAARGKGCGRPPRAAGPRRPPPRRAALPRRRLAPPRPGNKAGGAR Same 575623 chr6:34237414-34237551- 61593 61593 2248 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.898550724638 1.12727272727 0.385617391304 0.2179 0.937456521739 -0.551839130435 -0.00273350147471 0.368508884706 42903 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 -2.52325869565 0.1871 -0.603319565217 -1.91993913043 -0.044223100975 0.40662286856 68249 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0528162074735 chr6:122779795-122779867+ ENST00000311487.9,ENST00000478214.1 AntiUTR5intron,AntiNCintron protein-coding gene protein-coding gene ENSG00000186577 63856 495347 chr12:52721351-52721479- NoOverlap chr12 52721351 52721479 - 2.40749993435 43 0.471104912873 1.85085122183 0.556648712519 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;52721350;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52721351-52721479-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A52721351-52721479&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000757816486607 -0.0379258788559 0.45477185229 53115135 53115263 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;53115134;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A52721351-52721479-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A53115135-53115263&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TIPISVAGGGTWASGFSGAGGFGGPGGGCFGGSGFGGGGRGMGGSFGGRAGGFGGGIGGFRGGARGFCRGAGGFGGSGSFGGPGGFGGLR Same 497345 chr12:52721351-52721479- 63411 63411 445 0 536 52721165 52729639 810 810;1910;17559;33017;63856 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:52721165-52729639&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.589147286822 0.16796875 14.2904744186 0.7999 10.0187255814 4.27174883721 0.895983014955 0.817419997455 1304 67 67;82;632;969;1304 25.8618767442 0.665 20.0006209302 5.86125581395 0.931789958791 0.720003309302 1933 120 120;301;726;749;1933 0.342600295227 chr12:52776692-52777291- 0.329938092475 chr12:52795398-52796042- pseudogene extension KRT125P (ENSG00000258036) and KRT126P (ENSG00000257402) extended, i.e. two distinct keratin pseudogenes within the same genomic window 63879 538292 chr2:41932436-41932471- NoOverlap chr2 41932436 41932471 - 5.52524175247 12 0.789898527504 3.41314999262 2.11209175984 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;41932435;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A41932436-41932471-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A41932436-41932471&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0345310569209 -0.0380277312538 0.410970971695 42159576 42159611 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;42159575;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A41932436-41932471-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A42159576-42159611&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QMCPRLVSVWGMFP Same 539667 chr2:41932436-41932471- 61926 61926 1953 0 25807 41932436 41932471 Best 63879 63879 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:41932436-41932471&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.375 -4.23475 0.927 -2.004925 -2.229825 -0.00734001836495 0.132293914397 45496 Best 45496 45496 -4.86956666667 0.3329 -3.173525 -1.69604166667 -0.0248710782987 0.270748390299 52382 Best 52382 52382 0.0 0.0 ENST00000427054.5,ENST00000436551.1 NC,NCintron not annotated potentially spurious 63893 546379 chr21:8398182-8398619+ NoOverlap chr21 8398182 8398619 + 1.17479793264 146 0.183050571116 1.32993768207 -0.155139749426 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398181;438;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398182-8398619%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398182-8398619&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0201215544292 -0.0380994310571 0.515331908152 158585 159022 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158584;438;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398182-8398619%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158585-159022&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTAERAHGVGGDVGYPPDPS*NTDQGV*HVRESGARTKAAVAQ*R*RPARSPAEVGSRGLSSPPRAHHRPVSPAAPGRWSTSARVRTRKMVNYAWAGRSQRKLWWRSVAVLTCKSVVRPGYRGERLIEPSSSWFPPKFPSG*LALSQTR Same 547792 chr21:8398182-8398619+ 70378 70378 -6485 50 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.664383561644 1.1220113852 -1.02843630137 0.2691 -1.11036369863 0.0819273972603 0.00873837578957 0.583482195872 37342 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -4.51632328767 0.2949 -4.37169726027 -0.144626027397 -0.000778307713781 0.52199844417 35760 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0387752804069 chr5:138466757-138468081+ ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 63894 546440 chr21:8442411-8442848+ NoOverlap chr21 8442411 8442848 + 1.17479793264 146 0.183050571116 1.32993768207 -0.155139749426 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442410;438;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442411-8442848%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442411-8442848&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0201215544292 -0.0380994310571 0.515331908152 158585 159022 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;158584;438;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442411-8442848%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A158585-159022&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTAERAHGVGGDVGYPPDPS*NTDQGV*HVRESGARTKAAVAQ*R*RPARSPAEVGSRGLSSPPRAHHRPVSPAAPGRWSTSARVRTRKMVNYAWAGRSQRKLWWRSVAVLTCKSVVRPGYRGERLIEPSSSWFPPKFPSG*LALSQTR Same 547853 chr21:8442411-8442848+ 70379 70379 -6485 50 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.664383561644 1.1220113852 -1.12311164384 0.2738 -1.29167739726 0.168565753425 0.00759764772776 0.589475492932 37844 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -5.52537945205 0.3086 -5.17311917808 -0.352260273973 -0.0176966112709 0.509599773071 46325 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0952364810833 chr19:44649809-44650105+ not annotated LSU-rRNA_Hsa 64095 582271 chr7:114630509-114630535- NoOverlap chr7 114630509 114630535 - 6.53939995501 9 0.90490577554 1.37337767084 5.16602228416 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;114630508;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114630509-114630535-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A114630509-114630535&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0193275475293 -0.0389285478283 0.742388264589 114270564 114270590 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;114270563;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114630509-114630535-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A114270564-114270590&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVQARPEKPACQFDL Same 583232 chr7:114630509-114630535- 60927 60927 3168 0 321 114629847 114631629 437 437;4220;35515;64095;71246 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:114629847-114631629&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.62962962963 0.375 10.7716555556 1.0 5.29567777778 5.47597777778 0.364948415928 0.62858828936 4466 434 434;2787;4466;37278;71967 6.78237777778 0.8976 -6.08078888889 12.8631666667 0.254305170496 0.809461708905 5157 378 378;3418;5157;5827;54610 0.0 0.0 ENST00000350908.8,ENST00000412402.5 AntiCDSintron,AntiNCintron not annotated low complexity region 64121 531853 chr19:49642180-49642245- NoOverlap chr19 49642180 49642245 - 3.1315909851 22 0.655714850496 1.73801823367 1.39357275143 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49642179;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49642180-49642245-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49642180-49642245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00759351154407 -0.0390270628437 0.44026316412 50145437 50145502 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;50145436;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49642180-49642245-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A50145437-50145502&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APRPGLPPPSYPAARAAAPAPARGGAGWGGVR Same 533328 chr19:49642180-49642245- 65324 65324 -1203 0 570 49639968 49642300 868 868;30838;31024;64121 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49639968-49642300&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.863636363636 1.0 -3.95775454545 0.7336 -5.84630454545 1.88855 -0.0411254025743 0.466779938012 67214 23278 23278;28431;64936;67214 -4.78945909091 0.304 -9.13187272727 4.34241363636 -0.0070082027357 0.57682001671 39162 32520 32520;39162;57433;69715 0.0 0.0 ENST00000360565.7 AntiUTR5 not annotated putative regulatory region 64186 486923 chr11:2652195-2652224- NoOverlap chr11 2652195 2652224 - 6.04444012046 10 0.673374532692 0.652270174026 5.39216994643 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;2652194;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A2652195-2652224-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A2652195-2652224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.033235955231 -0.0393504732118 0.787378202199 2673425 2673454 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;2673424;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A2652195-2652224-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A2673425-2673454&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VAGLILSIRLQALATK Same 488887 chr11:2652195-2652224- 64483 64483 -297 0 2412 2652195 2652680 3436 3436;64186 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:2652195-2652680&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.7 0.30612244898 0.55611 0.8396 -4.51567 5.07178 -0.0233774883605 0.655644291742 56419 26025 26025;56419 -1.76206 0.2962 -6.03253 4.27047 -0.0214799424241 0.490826100027 49314 24281 24281;49314 0.0 0.0 ENST00000597346.1,ENST00000622358.1,ENST00000155840.9 NC,AntiNC,AntiCDSintron not annotated potentially spurious 64208 466653 chr1:111989694-111989729+ NoOverlap chr1 111989694 111989729 + 3.96877510349 12 0.461114925867 2.35299165399 1.6157834495 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;111989693;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111989694-111989729%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A111989694-111989729&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0133698021835 -0.0394511027799 0.369353125591 112532316 112532351 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;112532315;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111989694-111989729%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A112532316-112532351&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FVRPSVRGALPPPPPLPPPLPPPLPPPPLPQPPPLQPR Same 468513 chr1:111989694-111989729+ 63708 63708 500 0 3139 111987704 111990382 4367 4367;39514;56303;64208;68005;68136;69319 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:111987704-111990382&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.833333333333 1.08 5.6288 0.6455 6.00046666667 -0.371666666667 0.00207495324151 0.20545845945 40454 9251 9251;20935;24066;40454;53078;72081;72576 4.39136666667 0.3472 4.05115833333 0.340208333333 0.00113329864772 0.344624355174 34786 11706 11706;24170;34786;49854;53572;64032;73297 0.0 0.101020719857 chr3:47409928-47411686+ not annotated putative regulatory region 64231 516764 chr17:27456450-27456476+ NoOverlap chr17 27456450 27456476 + 7.04142200947 9 0.674004560752 3.11195558972 3.92946641975 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;27456449;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27456450-27456476%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A27456450-27456476&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00780267149128 -0.0395600653123 0.583375167674 25783476 25783502 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;25783475;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A27456450-27456476%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A25783476-25783502&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPQPSGRRGFRFAAAAGR Same 518153 chr17:27456450-27456476+ 63947 63947 284 0 384 27456338 27456877 537 537;12116;24649;64231 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:27456338-27456877&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 1.63636363636 11.5065333333 0.7779 5.97061111111 5.53592222222 0.126330662452 0.626127369136 13407 1054 1054;13407;16864;37001 8.05108888889 0.4821 2.12914444444 5.92194444444 0.0971642255451 0.534966344441 11778 1306 1306;11778;31000;38952 0.0 0.143363613289 chr16:88784901-88784964- coding exon(s) KSR1 alternative first exons 64238 528169 chr19:35775667-35775765+ NoOverlap chr19 35775667 35775765 + 2.73471523325 33 0.642755779355 2.28236364235 0.452351590901 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35775666;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35775667-35775765%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35775667-35775765&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0418995126189 -0.0396215415741 0.392222724226 36266569 36266667 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36266568;99;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35775667-35775765%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36266569-36266667&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DHGGKGPTRPSACPSGCQSVRAQPRPARPAPGPARSR Same 529618 chr19:35775667-35775765+ 66063 66063 -1825 0 630 35767600 35790402 970 970;24953;37997;48990;61514;64238;71528 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35767600-35790402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.79797979798 1.0924137931 -1.92247575758 0.773 -2.41952424242 0.497048484848 -0.0496883929753 0.404056348926 70882 432 432;4773;28957;32900;57014;70882;72541 -6.71297878788 0.3979 -7.41302727273 0.700048484848 -0.0361484962754 0.469132021085 62367 633 633;9309;48569;62013;62367;64507;71253 0.0 0.0200424143967 chr16:89192205-89192444+ ENST00000007510.8,ENST00000378944.9,ENST00000589133.5 CDSintron,UTR5intron,NCintron coding exon(s) PROSER3 retained intron CDS 64258 530329 chr19:15449682-15449795- NoOverlap chr19 15449682 15449795 - 1.704426309 38 0.385043347669 2.0835394624 -0.379113153407 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15449681;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15449682-15449795-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15449682-15449795&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0142426886894 -0.0397193303946 0.311413215268 15560493 15560606 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15560492;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15449682-15449795-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15560493-15560606&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPGEARPGLGSPRVGRSRSGAGEAPGRAGPGGTPRGGGGGGAFR None NA NA 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.912280701754 0.735780556676 -1.55917368421 0.4347 -1.62818157895 0.0690078947368 -0.0417836406203 0.384153520073 67567 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -1.03299736842 0.2539 -1.84608157895 0.813084210526 -0.00770953307063 0.507915910867 39573 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.039244191178 chr9:133992075-133992278- ENST00000263381.11 UTR5intron coding exon(s) WIZ 2 cassette exons 64264 541015 chr2:173198177-173198236- NoOverlap chr2 173198177 173198236 - 3.20535495281 20 0.918699931334 0.0171200871468 3.18823486567 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;173198176;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198177-173198236-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A173198177-173198236&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0374501935173 -0.0397561130912 0.659458375434 174062905 174062964 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;174062904;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198177-173198236-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A174062905-174062964&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NNITLTLCVSSYC*SFHKRELTFNLKKMKK Same 542386 chr2:173198177-173198236- 63783 63783 481 4 8077 173198177 173198791 11645 11645;14566;27301;64264;68000;70384;71375 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:173198177-173198791&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.606060606061 -0.85242 0.989 -1.627455 0.775035 -0.0176897391717 0.37195571298 52527 17915 17915;26281;30225;52527;56025;63590;73136 -1.97672 0.6035 -2.55228 0.57556 0.0048558111281 0.413155524082 33015 26199 26199;30281;33015;38868;44044;58152;65076 0.0 0.0 ENST00000423106.2,ENST00000419609.5,ENST00000338983.7,ENST00000476618.5 NC,NCintron,AntiCDSintron,AntiNCintron not annotated potentially spurious 64374 564507 chr5:77850992-77851036+ NoOverlap chr5 77850992 77851036 + 4.63821328084 15 0.905104142824 3.47113322417 1.16708005667 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;77850991;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77850992-77851036%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A77850992-77851036&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0554220937973 -0.0402481438053 0.333461098278 77146816 77146860 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;77146815;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77850992-77851036%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A77146816-77146860&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPSFRTWLVYIGPAPFPR Same 565495 chr5:77850992-77851036+ 62658 62658 1716 0 1311 77844392 77852299 1970 1970;21990;36224;37985;59349;64374;70990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:77844392-77852299&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.511111111111 0.714285714286 0.0923733333333 1.0 0.319373333333 -0.227 -0.0189829567607 0.258040305864 53467 7731 7731;27249;28623;33111;43677;53467;56140 -1.13734 0.9079 -1.92195333333 0.784613333333 -0.00129937576448 0.388975296085 36018 5174 5174;34772;36018;49756;55548;66524;72923 0.0 0.0 ENST00000522370.1 AntiUTR5intron not annotated putative regulatory region 64375 549843 chr22:30969257-30969283- NoOverlap chr22 30969257 30969283 - 6.56566646364 9 0.877409018082 1.52600007587 5.03966638777 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30969256;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969257-30969283-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30969257-30969283&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.014725123176 -0.0402492102358 0.727527106897 31365243 31365269 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31365242;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969257-30969283-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31365243-31365269&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SYRPGCVARPAPGTVSLNGGEGQESR Same 551184 chr22:30969257-30969283- 60688 60688 3687 0 396 30968818 30969787 554 554;2215;5416;5709;10618;10639;64375;71711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968818-30969787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.851851851852 1.28571428571 -0.693055555556 0.8967 1.8956 -2.58865555556 -0.0153365941746 0.0765419186152 50818 2943 2943;3632;14102;33814;35661;50818;50890;52885 -1.75685555556 0.3078 0.628522222222 -2.38537777778 -0.0202017435914 0.227688056311 48262 3899 3899;7559;12847;33921;34528;35006;48262;54755 0.0 0.0 under investigation; now made coding Identifies a putative CDS within exonic sequence of lncRNA TUG1. The STOP codon and reading frame are conserved in mammals, although no ATG initiation codon has been found. The 5' NPR terminus falls close to a [CTG] codon that is conserved in mammals, which would demarcate a single exon 153aa CDS [chr22:30969357-30969818]. This translation has now been experimentally confirmed by Lewandowski et al in a manuscript submitted to bioRxiv (https://www.biorxiv.org/content/10.1101/562066v1), and TUG1 will be annotated as a protein-coding gene in GENCODEv32. 64390 546275 chr21:8217871-8218071+ NoOverlap chr21 8217871 8218071 + 0.878686581307 67 0.238815535506 1.1139596901 -0.23527310879 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8217870;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217871-8218071%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8217871-8218071&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0131791566583 -0.0403072513124 0.381654875289 117346 117546 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;117345;201;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217871-8218071%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A117346-117546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CPREGPGAGSAGPAGRR*NTTTLIVFSLTR*GGGASPEGLSLLAPSARPRAGRARPAPGTVPGGEFDWGGTPVK Same 547688 chr21:8217871-8218071+ 64699 64699 -309 29 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.756218905473 0.950105042017 1.52441492537 0.0805 2.0339 -0.509485074627 0.020130603591 0.401558743491 32565 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 1.2611358209 0.0575 1.45922985075 -0.198094029851 -0.0273329686592 0.505806397967 54655 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000618951.1,ENST00000623664.1 NC,NCintron not annotated SSU-rRNA_Hsa repeat sequence 64470 558847 chr4:41748734-41748775+ NoOverlap chr4 41748734 41748775 + 3.91828571047 14 0.88407067107 -1.38801420161 5.30629991208 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41748733;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748734-41748775%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41748734-41748775&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.108604366936 -0.0405508946506 0.842337685347 41750751 41750792 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41750750;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748734-41748775%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41750751-41750792&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LASLLPAEPSFMKKPPMRCLV Same 559830 chr4:41748734-41748775+ 63175 63175 1295 0 2000 41745545 41752242 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.452380952381 0.0 0.349285714286 0.9978 -1.36438571429 1.71367142857 -0.00252393394087 0.408597216101 42787 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 -1.8972 0.905 -1.16394285714 -0.733257142857 -0.0222583744894 0.32203043457 50024 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0 ENST00000508038.1,ENST00000226382.3 NCintron,AntiUTR5 not annotated putative regulatory region 64475 577642 chr7:27130619-27130705+ NoOverlap chr7 27130619 27130705 + 2.05804122316 29 0.631172077042 -0.358758803072 2.41680002624 ENST00000360046.9,ENST00000428284.2,ENST00000610970.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27130618;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130619-27130705%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27130619-27130705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0837539153597 -0.0405990813147 0.635028476246 27170238 27170324 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27170237;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130619-27130705%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27170238-27170324&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPRPGRRLRRPSRCAARTPRREGTWARCSWSLSK Same 578681 chr7:27130619-27130705+ 66597 66597 -2122 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.724137931034 1.05241935484 -3.96349310345 0.6341 -5.47642413793 1.51293103448 -0.0523990367601 0.460898639277 71555 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -30.8285724138 0.7414 -27.4877965517 -3.34077586207 0.030003289561 0.159929439773 23747 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000360046.9,ENST00000317201.6,ENST00000467897.2 NCintron,AntiCDS,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 64534 531866 chr19:49839159-49839191- NoOverlap chr19 49839159 49839191 - 5.32593651251 11 0.566745042552 -0.352554624731 5.67849113724 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49839158;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49839159-49839191-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49839159-49839191&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0407473808832 -0.0408874903667 0.837081564287 50342416 50342448 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;50342415;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49839159-49839191-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A50342416-50342448&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVLSQCWACLGTMPQTSSVTSR Same 533342 chr19:49839159-49839191- 64424 64424 110 0 25897 49839159 49839191 Best 64534 64534 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49839159-49839191&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.545454545455 0.458333333333 -4.33776363636 0.8131 -3.58319090909 -0.754572727273 0.0115225913288 0.219440194459 36134 Best 36134 36134 -4.33776363636 0.2541 -3.58319090909 -0.754572727273 -0.0173336426767 0.298785495129 46062 Best 46062 46062 0.0 0.0 ENST00000596521.1 NC not annotated potentially spurious 64710 548831 chr22:40636406-40636465+ NoOverlap chr22 40636406 40636465 + 3.19524994455 20 0.596758983749 2.20115015694 0.994099787611 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;40636405;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A40636406-40636465%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A40636406-40636465&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0234372746929 -0.0417236876682 0.371429651022 41032410 41032469 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;41032409;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A40636406-40636465%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A41032410-41032469&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VGGEKGCSRRGEAAVGEGSPTR Same 550201 chr22:40636406-40636465+ 65171 65171 -461 0 1285 40636406 40636954 1941 1941;2100;64710 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:40636406-40636954&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.75 0.666666666667 -0.280795 0.7171 0.356755 -0.63755 -0.0316311091633 0.257172880292 61564 4778 4778;8739;61564 0.39685 0.2764 -0.813285 1.210135 -0.00409113329836 0.441467969228 37470 6418 6418;10608;37470 0.0 0.111370504549 chr20:33663532-33663867+ ENST00000355630.7,ENST00000463769.6 AntiUTR5intron,AntiNCintron not annotated putative regulatory region 64750 492177 chr12:57611601-57611684+ NoOverlap chr12 57611601 57611684 + 2.02029998068 28 0.544349257213 -0.102832126564 2.12313210725 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;57611600;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57611601-57611684%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A57611601-57611684&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0534616135861 -0.041972517759 0.589642846674 58005384 58005467 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;58005383;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57611601-57611684%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A58005384-58005467&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPHPGPASPTIPPPSTGHLDPRPPHRQGSGNPPRPARRPGPAPLSL Same 494158 chr12:57611601-57611684+ 65560 65560 -810 0 115 57604808 57624781 137 137;276;887;2361;32008;57382;64750;68543 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:57604808-57624781&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.761904761905 0.7875 -4.14038571429 0.8073 -8.84015714286 4.69977142857 -0.0278888109726 0.726211151333 59213 192 192;198;227;1040;9332;22257;31301;59213 -8.37221428571 0.3822 -14.7071321429 6.33491785714 0.00972554826468 0.674915208127 30873 667 667;1211;1268;2339;27890;29446;30873;52552 0.0 0.0994779781769 chr10:118754396-118754762- ENST00000286494.8,ENST00000333972.11 UTR5,CDSintron coding exon(s) SLC26A10 alternative final exon 64755 518116 chr17:48626716-48626760+ NoOverlap chr17 48626716 48626760 + 3.91236006419 15 0.745212990514 -0.433133220673 4.34549328486 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48626715;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626716-48626760%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48626716-48626760&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0551579108513 -0.0420103788031 0.74811585907 46704078 46704122 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46704077;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626716-48626760%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46704078-46704122&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAVLNMGRRGRRRGGGKRRAALGGTQAVEPSPQAGR Same 519517 chr17:48626716-48626760+ 64434 64434 321 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.844444444444 1.03448275862 -2.85937333333 0.9013 -7.02737333333 4.168 -0.0289834864595 0.621496067805 59914 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -9.27358666667 0.4469 -16.7992266667 7.52564 -0.0107443844169 0.633480852938 41397 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000567101.2 AntiNCintron not annotated putative regulatory region 64782 546237 chr21:8210837-8210911+ NoOverlap chr21 8210837 8210911 + 2.47156802416 25 0.548777904936 1.89253199697 0.579036027193 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8210836;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8210837-8210911%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8210837-8210911&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0318355629713 -0.0421377453633 0.361310752652 110284 110358 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;110283;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8210837-8210911%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A110284-110358&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ELTEGHHQEWSLRLNLTQHGKPHPARTR Same 547651 chr21:8210837-8210911+ 65317 65317 -535 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.626666666667 0.679347826087 -1.655452 0.2583 -2.71082 1.055368 -0.00177839448959 0.421738164536 42398 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -1.589628 0.1722 -2.883944 1.294316 -0.0326257683123 0.472856468534 59449 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1,ENST00000631211.1 NCintron,AntiNC not annotated SSU-rRNA_Hsa repeat sequence 64783 489531 chr11:114163838-114163867- NoOverlap chr11 114163838 114163867 - 6.30503000617 10 0.876798657206 2.87586991787 3.4291600883 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;114163837;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114163838-114163867-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A114163838-114163867&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.020902333617 -0.0421491869789 0.546005909146 114034560 114034589 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;114034559;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A114163838-114163867-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A114034560-114034589&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TQKPCKWIDIMWKQIYR Same 491516 chr11:114163838-114163867- 61815 61815 2968 0 608 114160174 114164042 933 933;13272;22012;22975;35216;64783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:114160174-114164042&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.3 0.0 -3.64365 0.9792 -1.20993 -2.43372 -0.0110291436067 0.11056731657 47790 5084 5084;14121;38000;47790;65893;71735 -7.85302 0.5958 -7.99935 0.14633 -0.0414691729706 0.318060720928 66305 4785 4785;23552;42025;54566;64496;66305 0.0 0.0 ENST00000335953.8,ENST00000539918.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 64795 558836 chr4:41745545-41745577+ NoOverlap chr4 41745545 41745577 + 5.33192736452 11 0.69894365953 -0.0909728028558 5.42290016738 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41745544;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41745545-41745577%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41745545-41745577&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0475011942973 -0.0421877420194 0.811103219207 41747562 41747594 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41747561;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41745545-41745577%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41747562-41747594&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SAGGALAPLRGPRQVRSQGSLFVLFGG Same 559819 chr4:41745545-41745577+ 64819 64819 -24 0 2000 41745545 41752242 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.757575757576 0.634615384615 -1.36810909091 0.8937 -0.567518181818 -0.800590909091 -0.0271366151263 0.196857279256 58779 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 -0.531290909091 0.5411 -4.05237272727 3.52108181818 -0.00272438185772 0.469187630693 36745 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0872782842649 chr12:132143993-132144296- ENST00000226382.3 AntiUTR3 not annotated putative regulatory region 64894 529180 chr19:51692831-51692908+ NoOverlap chr19 51692831 51692908 + 1.95219613039 26 0.502422663169 0.954296192298 0.997899938088 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;51692830;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51692831-51692908%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A51692831-51692908&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0289100057421 -0.0426128419278 0.426641387359 52196084 52196161 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;52196083;78;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A51692831-51692908%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A52196084-52196161&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EITIRPPSFPQAAPCTGRGPAGTPSPTQGPLAPLGCPR Same 530639 chr19:51692831-51692908+ 64971 64971 -77 0 35 51689064 51704502 36 36;627;856;1326;1454;40692;42934;44155;47108;50791;52997;54508;55930;57147;62178;62488;64894 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:51689064-51704502&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.730769230769 0.590909090909 1.24091538462 0.8878 -0.433319230769 1.67423461538 0.0560461052219 0.498002412924 21946 243 243;620;695;757;1526;15701;21946;24192;24426;42225;46677;63884;64185;64321;66485;68418;70756 -7.2084 0.5753 -7.51986153846 0.311461538462 -0.0350286376386 0.421035192368 61478 43 43;1835;2265;2343;2820;15370;15948;21901;26977;48105;61478;64113;64269;65937;69983;72529;73004 0.0 0.0757933441173 chr11:65598291-65598628- ENST00000362102.2,ENST00000602324.1 NC,AntiNC protein-coding gene protein-coding gene ENSG00000182310 64898 650634 chr16:56192139-56192234- Extension chr16 56192139 56192234 - 1.99625000451 32 0.677268825818 -0.170537532773 2.16678753728 chr16:56192139-56192345- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;56192138;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56192139-56192234-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A56192139-56192234&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0846716936738 -0.0426349880879 0.62088399262 56226051 56226146 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;56226050;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56192139-56192234-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A56226051-56226146&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VHPMVAPSLPQPARLGWHGSPAWSAPHPPREQSLGSR Same 651261 chr16:56192139-56192234- 67025 67025 -2127 0 1286 56191313 56194112 1942 1942;3444;31465;36646;38456;47043;50502;59548;64898;65693 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:56191313-56194112&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.75 0.474074074074 -3.58896875 0.8722 -3.764378125 0.175409375 -0.0760738986792 0.357386144955 73281 5744 5744;16309;26528;60646;61684;66065;68363;69167;72514;73281 -12.8561125 0.6191 -15.137146875 2.281034375 -0.0518036755647 0.49299845132 71986 7040 7040;17639;26908;52826;54474;57942;62845;66974;67638;71986 0.0 0.0407327564259 chr16:89711882-89711969- ENST00000262493.10,ENST00000569295.5 AntiUTR5,AntiNC not annotated putative regulatory region 65020 544157 chr20:58856145-58856213+ NoOverlap chr20 58856145 58856213 + 2.77985647709 23 0.766544262774 0.394704314354 2.38515216274 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;58856144;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58856145-58856213%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A58856145-58856213&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0342723601086 -0.0432507544827 0.583319686022 57431200 57431268 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;57431199;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A58856145-58856213%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A57431200-57431268&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PCFCMSFSLFPFALSVSSLLIRSPNPPAFTVEKPDTQVSGAPGAAHLSSVFCTHTAR Same 545548 chr20:58856145-58856213+ 65332 65332 -312 0 305 58839591 58856213 410 410;1778;7945;12986;19091;20890;24880;65020;71495 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:58839591-58856213&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.492753623188 1.22666666667 0.775373913043 0.9916 -1.92254782609 2.69792173913 0.0949084464411 0.568495124474 16426 115 115;1018;3966;4263;7912;16426;32661;49033;70767 0.0154695652174 0.3761 -1.62005217391 1.63552173913 0.0267875547724 0.47788848759 24762 366 366;3178;7236;8695;17364;24762;29540;46544;65521 0.0 0.0 ENST00000371099.6,ENST00000481768.5,ENST00000349036.7,ENST00000313949.11,ENST00000462499.5 UTR3,NC,CDSintron,UTR3intron,NCintron coding exon(s) GNAS cassette exon 65107 515944 chr17:2400231-2400275+ NoOverlap chr17 2400231 2400275 + 4.35978676478 15 0.820444037537 1.78402667443 2.57576009035 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2400230;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400231-2400275%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2400231-2400275&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0161971020306 -0.043704553529 0.520206932942 2303525 2303569 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2303524;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400231-2400275%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2303525-2303569&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSHHTSPVHTRTHTR Same 517320 chr17:2400231-2400275+ 63349 63349 1758 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.644444444444 1.33928571429 0.493793333333 0.9111 -2.93813333333 3.43192666667 0.00679867732348 0.56645775623 38213 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -5.87856666667 0.4734 -9.09254666667 3.21398 -0.0241813175588 0.478799902166 51742 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.148184264951 chr15:60004964-60005941+ ENST00000174618.4,ENST00000574559.1 AntiCDSintron,AntiNCintron not annotated putative regulatory region 65203 617328 chr11:1094429-1094473+ Extension chr11 1094429 1094473 + 2.16445330928 15 0.281331603978 -3.51899330219 5.68344661146 chr11:1094429-1094503+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;1094428;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1094429-1094473%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A1094429-1094473&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0730455220086 -0.0442812789353 0.894680972588 1092367 1092411 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;1092366;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A1094429-1094473%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A1092367-1092411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CITTPSPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTLPPTTTSSPLTTTPLPPSITPPTFSPFSTTTPTTPCVPLCNWTGWLDSGKPNFHKPGGDTELIGDVCGPGWAANISCR Same 618029 chr11:1094429-1094473+ 55251 55251 9952 0 26 1074896 1110292 26 26;37;47;49;58;76;84;101;106;117;119;232;239;262;267;282;322;357;644;745;802;817;861;890;938;1001;1043;1115;1133;1198;1235;1800;1830;1833;2008;2473;2531;3336;3368;3875;4783;5467;5938;7537;9174;10066;13564;15625;16639;20137;22229;39446;46634;65203 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:1074896-1110292&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.622222222222 0.0 6.14847333333 0.5201 -0.62584 6.77431333333 0.0949780800819 0.830190116852 16420 90 90;153;175;209;235;240;250;273;315;324;337;359;386;389;397;407;431;461;484;486;494;566;582;720;723;730;805;827;836;923;948;980;1061;1067;1087;1127;1210;1223;1256;1290;1525;1772;1956;2093;2256;2300;2500;2614;3168;4172;4816;7903;13875;16420 7.96146 0.4044 -0.387306666667 8.34876666667 0.217623839675 0.691996474289 5802 64 64;212;344;367;370;407;441;443;584;639;661;826;834;858;932;955;969;1033;1048;1097;1103;1105;1106;1141;1159;1227;1242;1294;1319;1332;1391;1403;1415;1422;1451;1465;1526;1529;1583;1655;1680;2001;2040;2088;2116;2423;2683;2805;2834;2917;4097;4254;5802;22050 0.00705553406108 chr11:1182155-1192525+ 0.570722393332 chr11:1182155-1192525+ ENST00000361558.7 NC known assembly issue MUC2 has a known sequence error; the CDS cannot yet be annotated 65226 492399 chr12:69359981-69360016+ NoOverlap chr12 69359981 69360016 + 5.57890006403 12 0.929241372295 3.66344174494 1.91545831909 ENST00000247843.6,ENST00000548020.5,ENST00000552955.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;69359980;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A69359981-69360016%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A69359981-69360016&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0405378157485 -0.0444031535226 0.384800349229 69753761 69753796 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;69753760;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A69359981-69360016%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A69753761-69753796&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLSLAAAASSVGQYVQENGRIWA*LRRESK Same 494381 chr12:69359981-69360016+ 64063 64063 1163 4 625 69353147 69360016 958 958;26782;65226 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:69353147-69360016&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.638888888889 0.9 -1.59090833333 0.945 -1.18990833333 -0.401 -0.0384511789581 0.231490817102 65690 7219 7219;9208;65690 -13.2723416667 0.7992 -19.5765666667 6.304225 -0.047339142684 0.527562037939 70149 3841 3841;11806;70149 0.0 0.0 ENST00000247843.6,ENST00000549685.5,ENST00000552949.1 CDS,UTR5,NC not annotated putative regulatory region 65263 561229 chr4:17883742-17883768- NoOverlap chr4 17883742 17883768 - 6.51241119703 9 0.764003967346 1.07564446661 5.43676673041 ENST00000382224.5,ENST00000382226.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;17883741;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17883742-17883768-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A17883742-17883768&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0315660899823 -0.0446190473548 0.772851492983 17885365 17885391 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;17885364;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A17883742-17883768-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A17885365-17885391&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YDRFRDWQLQK Same 562220 chr4:17883742-17883768- 63681 63681 1582 0 124 17873404 17884833 150 150;329;393;423;679;714;996;1113;1242;1584;1605;2333;2665;2708;3427;5897;22982;33783;65263 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:17873404-17884833&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.0 0.139911111111 1.0 -3.23373333333 3.37364444444 -0.0359811844006 0.504708730761 64283 102 102;221;260;304;601;667;854;946;1138;1254;1337;1836;2025;2125;2608;3581;13202;31117;64283 -4.8634 0.7797 -9.49437777778 4.63097777778 -0.0407005618576 0.491868732147 65753 322 322;646;674;706;710;724;980;1074;1192;1215;1235;1438;2849;3149;4128;4255;8337;62820;65753 0.0 0.0882229287929 chr10:96954953-96955922+ ENST00000382224.5,ENST00000326877.8,ENST00000510121.5 CDS,CDSintron,NCintron coding exon(s) LCORL 4.8kb cassette exon 65275 512318 chr16:72802213-72802320+ NoOverlap chr16 72802213 72802320 + 1.79613884787 36 0.9442511635 -0.630258354876 2.42639720274 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72802212;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72802213-72802320%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72802213-72802320&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0931402331793 -0.0447019755411 0.677735442468 72836112 72836219 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72836111;108;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72802213-72802320%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72836112-72836219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IIMEKRDFCT*KVEVNQV*MTAKKKKKRHQFISPLLSR Same 513962 chr16:72802213-72802320+ 63846 63846 1429 17 1044 72786749 72802320 1595 1595;21079;37333;39725;51719;54149;65275;67341;70055 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72786749-72802320&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.388888888889 0.494279176201 -0.623933333333 0.9989 -4.90156944444 4.27763611111 0.167209421156 0.772652665847 10458 2453 2453;8633;10458;20402;20517;20622;22628;49851;70811 -4.31464722222 0.7509 -10.1332916667 5.81864444444 0.126017592915 0.708913647467 9416 1956 1956;9416;10906;18989;19008;25678;39101;45598;59430 0.0 0.0 ENST00000268489.9 AntiCDSintron not annotated putative regulatory region 65363 520080 chr17:6640131-6640157- NoOverlap chr17 6640131 6640157 - 6.72574441963 9 0.584554478947 1.69851106736 5.02723335226 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;6640130;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A6640131-6640157-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A6640131-6640157&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0337498558783 -0.0451918465008 0.723308417542 6543451 6543477 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;6543450;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A6640131-6640157-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A6543451-6543477&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GARRRAKPSEWETR None NA NA 0 196 6637185 6640241 237 237;7084;40012;65363 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:6637185-6640241&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 1.0 7.91032222222 0.864 4.1168 3.79352222222 0.0636117873347 0.507619735061 20653 155 155;1869;2583;20653 1.56295555556 0.5521 5.36343333333 -3.80047777778 -0.0361111921574 0.177693758527 62339 975 975;4420;5195;62339 0.0 0.197690966661 chrX:101655690-101657588- ENST00000361413.7,ENST00000570455.1 UTR5intron,NCintron not annotated putative regulatory region 65414 502127 chr14:75279543-75279578+ NoOverlap chr14 75279543 75279578 + 4.93652489533 12 0.923670557717 0.111783356716 4.82474153861 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;75279542;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75279543-75279578%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A75279543-75279578&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0499828210695 -0.0454711873444 0.761653597114 75746246 75746281 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;75746245;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A75279543-75279578%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A75746246-75746281&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GSFIDKKRVHSGDSGAAPASAQTSGIFITNPLSSK Same 504029 chr14:75279543-75279578+ 64670 64670 744 0 456 75277155 75281681 653 653;2707;13175;15627;32302;36623;37128;61784;65414 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:75277155-75281681&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.388888888889 0.734693877551 0.187241666667 0.9989 -2.19160833333 2.37885 -0.0139976620171 0.448302247266 49903 3768 3768;6703;12830;13388;17137;39238;49903;64236;73058 -7.58853333333 0.7991 -10.5413916667 2.95285833333 -0.0447891286997 0.439781767638 68586 9152 9152;14942;21009;33752;35396;56305;59433;66250;68586 0.0 0.0 ENST00000303562.8 CDSintron not annotated putative regulatory region 65424 543104 chr20:31722888-31722932+ NoOverlap chr20 31722888 31722932 + 4.46089337667 15 0.913401998932 1.97380667925 2.48708669742 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;31722887;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A31722888-31722932%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A31722888-31722932&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0227152271539 -0.0455261466518 0.507309149062 30310691 30310735 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;30310690;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A31722888-31722932%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A30310691-30310735&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAAPQPRPPATREPSPLSLARPLALR Same 544493 chr20:31722888-31722932+ 64126 64126 1298 0 1635 31722888 31724001 2432 2432;20584;65424 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:31722888-31724001&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.755555555556 0.5625 0.308166666667 0.9779 -0.226053333333 0.53422 -0.0152600748099 0.317922325974 50767 15736 15736;50767;69771 -6.10878 0.4261 -7.14906 1.04028 -0.0332413863858 0.390929398556 59986 28732 28732;59986;60988 0.0 0.0 ENST00000629058.1,ENST00000422920.1,ENST00000420488.5 NC,AntiUTR5,AntiUTR5intron not annotated putative regulatory region 65557 547180 chr21:8395599-8395880- NoOverlap chr21 8395599 8395880 - 0.99034467498 94 0.221040243235 0.648970205575 0.341374469406 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395598;282;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395599-8395880-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395599-8395880&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0342360051714 -0.0462700645321 0.449254997392 155989 156270 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155988;282;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395599-8395880-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155989-156270&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADAAGSALRGTEGPRRALRGNPQPRTPRSPEAPPGAIDRQATLRQA*PREEPGAASAFEVSMINVSCNSH*FSQLAAFFIDARAE*STAKSRTR Same 548584 chr21:8395599-8395880- 64761 64761 796 47 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.670212765957 1.07512895268 -2.41244574468 0.2722 -4.38866808511 1.97622234043 -0.0236719669736 0.521535674068 56608 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -15.0842265957 0.5963 -16.9878446809 1.90361808511 -0.0187051959076 0.555137260487 47105 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0232887238963 chr1:6485324-6485443- ENST00000613359.1,ENST00000623860.2 AntiNC,AntiNCintron not annotated SSU-rRNA_Hsa 65558 547273 chr21:8439815-8440096- NoOverlap chr21 8439815 8440096 - 0.99034467498 94 0.221040243235 0.648970205575 0.341374469406 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439814;282;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439815-8440096-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439815-8440096&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0342360051714 -0.0462700645321 0.449254997392 155989 156270 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155988;282;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439815-8440096-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155989-156270&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ADAAGSALRGTEGPRRALRGNPQPRTPRSPEAPPGAIDRQATLRQA*PREEPGAASAFEVSMINVSCNSH*FSQLAAFFIDARAE*STAKSRTR Same 548676 chr21:8439815-8440096- 64762 64762 796 47 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.670212765957 1.07512895268 -3.43971808511 0.2969 -4.60057340426 1.16085531915 -0.0519982312693 0.424589827676 71455 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -14.2705138298 0.5644 -15.5270776596 1.25656382979 -0.0223401686693 0.531901043384 50087 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0237102796581 chr1:6485324-6485443- ENST00000619471.1 AntiNC not annotated SSU-rRNA_Hsa 65649 478904 chr10:113123109-113123141+ NoOverlap chr10 113123109 113123141 + 5.68308186802 11 0.847881423528 2.10346375812 3.5796181099 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113123108;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113123109-113123141%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113123109-113123141&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00813124672339 -0.046668181662 0.588195067564 114882868 114882900 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114882867;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113123109-113123141%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114882868-114882900&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SHDCTYSTHFIKFTGVLIADQ Same 480805 chr10:113123109-113123141+ 62933 62933 2716 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.454545454545 0.0 0.5577 0.9981 -1.91459090909 2.47229090909 -0.0155426640159 0.446450093445 50976 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -0.0456454545455 0.9264 -0.623790909091 0.578145454545 -0.00984408494832 0.350687531499 40834 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 65693 514456 chr16:56191313-56191441- NoOverlap chr16 56191313 56191441 - 1.29709535837 43 0.360147693138 1.5971255992 -0.300030240832 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;56191312;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191313-56191441-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A56191313-56191441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0182657311889 -0.0468756348455 0.339852531158 56225225 56225353 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;56225224;129;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A56191313-56191441-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A56225225-56225353&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RARAWARGGEEASAARECASGSAHPAPRAAS*RQQGRAPGPRDGEGAGR Same 516108 chr16:56191313-56191441- 64970 64970 723 11 1286 56191313 56194112 1942 1942;3444;31465;36646;38456;47043;50502;59548;64898;65693 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:56191313-56194112&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.852713178295 1.02482621648 -1.5851255814 0.4527 -0.506411627907 -1.07871395349 -0.0449159133624 0.291922636923 69167 5744 5744;16309;26528;60646;61684;66065;68363;69167;72514;73281 -2.78388139535 0.2961 -1.90017906977 -0.883702325581 -0.0253546059112 0.44388979957 52826 7040 7040;17639;26908;52826;54474;57942;62845;66974;67638;71986 0.0 0.261736213366 chr2:240934331-240934475+ ENST00000262493.10 AntiUTR5 not annotated putative regulatory region 65862 479596 chr10:129844929-129844955+ NoOverlap chr10 129844929 129844955 + 6.79218882985 9 0.909697108415 2.91971095403 3.87247787582 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129844928;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129844929-129844955%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129844929-129844955&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00553220554595 -0.0477758345335 0.580762633728 131643193 131643219 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131643192;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129844929-129844955%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131643193-131643219&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TFYMPFNFKQR Same 481501 chr10:129844929-129844955+ 63386 63386 2476 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 1.5 -0.485477777778 0.9875 -0.829188888889 0.343711111111 -0.0440265883289 0.261293171309 68734 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -2.4017 0.9324 -4.43388888889 2.03218888889 -0.0321747881139 0.391652476982 59069 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 65893 543854 chr20:50243193-50243267+ NoOverlap chr20 50243193 50243267 + 2.78348002724 25 0.746809491112 1.48961998701 1.29386004023 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;50243192;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A50243193-50243267%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A50243193-50243267&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.000343907662557 -0.0479353816919 0.45270595284 48859730 48859804 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;48859729;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A50243193-50243267%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A48859730-48859804&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RPPGLAPLPSWRPRPGPRARAAHLDNAPTPGTKAHCSGPRWR Same 545245 chr20:50243193-50243267+ 66649 66649 -756 0 1027 50233512 50243267 1568 1568;65893 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:50233512-50243267&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.706666666667 0.854700854701 -3.1396 0.9639 -4.34762 1.20802 -0.0605551130771 0.426201136361 72532 10528 10528;72532 -3.64314 0.3579 -5.523284 1.880144 -0.0101806623559 0.493368780818 41035 12572 12572;41035 0.0 0.0 not annotated low complexity region 65936 473174 chr1:90834458-90834541- NoOverlap chr1 90834458 90834541 - 2.21402137833 28 0.889447296428 -0.420532093516 2.63455347185 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90834457;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90834458-90834541-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90834458-90834541&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0778360461864 -0.0481745901941 0.656262954612 91300015 91300098 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91300014;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90834458-90834541-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91300015-91300098&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VADSDCGNFR*RR*ENPFKDELPPEKGWLTK Same 475053 chr1:90834458-90834541- 64542 64542 1394 12 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.488095238095 0.823529411765 -1.93417142857 0.9994 -2.36157857143 0.427407142857 -0.0374671153794 0.379082932308 65116 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -14.3969964286 0.8906 -12.932775 -1.46422142857 -0.0560527536997 0.323078927992 72992 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 65975 588820 chr9:35305942-35305995+ NoOverlap chr9 35305942 35305995 + 3.08928336038 18 0.912397955291 -1.42011108663 4.50939444701 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35305941;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35305942-35305995%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35305942-35305995&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.126814625538 -0.0483507587669 0.800110407831 35305939 35305992 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35305938;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35305942-35305995%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35305939-35305992&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASATLPRAKSQAEGLFTLPSFFSTASSSIK Same 589763 chr9:35305942-35305995+ 65793 65793 182 0 5 35300167 35307879 5 5;669;1004;1082;1090;2464;3976;4603;5133;9301;65975 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35300167-35307879&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.0 2.38119444444 0.9742 -4.03532222222 6.41651666667 0.211686138573 0.838629048951 8325 565 565;1736;1846;2357;2445;2557;2989;3035;3218;3591;8325 13.9547388889 0.7091 -1.81003333333 15.7647722222 0.717726678851 0.943189171895 2753 420 420;802;1067;1389;1934;2365;2375;2403;2753;3466;5635 0.0 0.0 ENST00000378495.7,ENST00000378496.8 CDSintron,UTR5intron coding exon(s) UNC13B cassette exon 66021 528223 chr19:37830020-37830049+ NoOverlap chr19 37830020 37830049 + 6.35238009691 10 0.809179827573 4.55078003407 1.80160006285 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37830019;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830020-37830049%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37830020-37830049&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0199005194192 -0.0485652473226 0.334812515532 38320660 38320689 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38320659;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830020-37830049%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38320660-38320689&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TNLGTNTVSNIKKKLGRKGLGTSCISSAFFR Same 529672 chr19:37830020-37830049+ 63857 63857 2164 0 2752 37822686 37830193 3865 3865;20012;66021;67001 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37822686-37830193&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.0 5.47148 0.9207 13.22712 -7.75564 -0.019234024852 -0.0529434657326 53649 16693 16693;25935;53649;54524 5.17968 0.4737 20.46032 -15.28064 -0.0189608240562 -0.0451772559198 47287 7159 7159;7167;27389;47287 0.0 0.0 ENST00000443870.2,ENST00000592640.5 NC,AntiNCintron pseudogene zinc finger protein pseudogene (ENSG00000267640) 66023 467301 chr1:153922474-153922617+ NoOverlap chr1 153922474 153922617 + 1.82768334417 48 0.348915655756 1.90384789556 -0.0761645513897 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;153922473;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922474-153922617%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A153922474-153922617&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0146469805566 -0.0485840444536 0.38391464592 153894950 153895093 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;153894949;144;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922474-153922617%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A153894950-153895093&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VARAKGGEDEVKKEREAGARRAGVGGGGRKAGARGRASARGRFPSPRPSTFPFPHLR Same 469168 chr1:153922474-153922617+ 65150 65150 873 0 442 153922296 153923335 631 631;25620;45644;48477;49099;61066;66023;69687 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:153922296-153923335&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8125 0.933333333333 0.74693125 0.4065 -0.54295 1.28988125 0.00638871539708 0.552470097648 38385 8425 8425;19724;29638;38385;45793;48574;52177;55960 -3.92075833333 0.2732 -6.150775 2.23001666667 -0.0122443354836 0.584900192448 42340 6002 6002;12984;19687;42340;44124;45459;47982;71255 0.0 0.116762469816 chr5:181224000-181224812+ ENST00000368655.4 AntiUTR5intron not annotated putative regulatory region 66026 572207 chr6:97885415-97885567+ NoOverlap chr6 97885415 97885567 + 2.13349215453 51 0.980241062626 2.13771962301 -0.00422746848826 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;97885414;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A97885415-97885567%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A97885415-97885567&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.132426510838 -0.0485925773377 0.402385697586 98333291 98333443 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;98333290;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A97885415-97885567%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A98333291-98333443&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFESALFFIFPAAQSIQRLSQRGSGQSIKVSRYIPLTCMSSLMNSQHDLS*QAGNGCNKDCFCMLFASLINHHAVHQIQVPHGNFISYGEK Same 573232 chr6:97885415-97885567+ 61367 61367 4659 14 7407 97885333 97885567 10594 10594;37193;66026 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:97885333-97885567&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.397058823529 -0.754637254902 0.9795 -0.738041176471 -0.0165960784314 0.0306768114158 0.408586759655 28414 15549 15549;28414;41858 -3.29769411765 0.9291 -3.34204117647 0.0443470588235 0.0731384798859 0.495701424995 14696 12957 12957;14696;29076 0.0 0.0 ENST00000606913.5,ENST00000607823.5 NC,NCintron not annotated potentially spurious 66217 579972 chr7:152168572-152168607+ NoOverlap chr7 152168572 152168607 + 4.95798331499 12 0.890282546222 0.42371668915 4.53426662584 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;152168571;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A152168572-152168607%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A152168572-152168607&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0380304104289 -0.0496763451551 0.727998963636 151865657 151865692 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;151865656;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A152168572-152168607%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A151865657-151865692&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DLPQGKPFWFLEPGEQR Same 580941 chr7:152168572-152168607+ 64286 64286 1931 0 397 152163143 152176287 555 555;1572;3794;66217 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:152163143-152176287&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.0 0.606633333333 0.9706 -0.293466666667 0.9001 -0.0247859555806 0.323699414054 57298 2815 2815;5783;19575;57298 -0.357525 0.3752 -1.97019166667 1.61266666667 -0.0175606723073 0.399725674356 46222 4389 4389;6920;21646;46222 0.0 0.0 ENST00000262189.10,ENST00000473186.5 AntiCDSintron,AntiNCintron not annotated potentially spurious 66339 563917 chr5:37842081-37842122+ NoOverlap chr5 37842081 37842122 + 4.86735012702 14 0.949753130824 3.03441437653 1.83293575048 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;37842080;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37842081-37842122%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A37842081-37842122&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0304539572784 -0.0504233817378 0.405712222919 37842183 37842224 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;37842182;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37842081-37842122%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A37842183-37842224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AFRKGHPARPHENWIEVQELEGHSGYSSVTGLSR Same 564905 chr5:37842081-37842122+ 65765 65765 574 0 1098 37834655 37842122 1665 1665;3432;9737;17708;23431;43248;66339;67574 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:37834655-37842122&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.619047619048 0.254545454545 -1.91065 1.0 -2.46166428571 0.551014285714 -0.0423615786472 0.316180982559 67906 4518 4518;14736;23580;58453;64403;65427;67583;67906 -1.91065 0.3126 -2.46166428571 0.551014285714 -0.0242528714619 0.372019380961 51811 5584 5584;29735;41849;43350;44494;45609;51811;60370 0.0 0.0 ENST00000503382.6 NCintron not annotated putative regulatory region 66403 479626 chr10:129854658-129854684+ NoOverlap chr10 129854658 129854684 + 5.80851098564 9 0.83370717937 -0.694599813885 6.50311079952 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129854657;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129854658-129854684%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129854658-129854684&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0933027378704 -0.0508301525574 0.887069838146 131652922 131652948 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131652921;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129854658-129854684%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131652922-131652948&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SMHGQGQINSG Same 481531 chr10:129854658-129854684+ 63675 63675 2728 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.0 6.62555555556 0.9984 2.00243333333 4.62312222222 0.166343060226 0.587888391206 10504 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -2.28737777778 0.935 -8.6541 6.36672222222 -0.0102464512223 0.567155821684 41064 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 66439 478896 chr10:113119058-113119087+ NoOverlap chr10 113119058 113119087 + 5.95714001656 10 0.920218204013 1.34731993675 4.6098200798 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113119057;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119058-113119087%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113119058-113119087&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0241980687606 -0.0510368514926 0.69981912041 114878817 114878846 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114878816;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119058-113119087%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114878817-114878846&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LKKMSCVNQCGS Same 480797 chr10:113119058-113119087+ 64727 64727 1712 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.433333333333 0.833333333333 0.23986 0.9984 -0.10074 0.3406 -0.0350263514425 0.265188930145 63701 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -3.2681 0.9304 -2.86534 -0.40276 -0.0400235531299 0.305549249128 65257 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 66443 520381 chr17:8226611-8226688- NoOverlap chr17 8226611 8226688 - 2.70000378902 26 0.767011755316 1.51544233927 1.18456144975 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8226610;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8226611-8226688-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8226611-8226688&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00385347260268 -0.0510796834256 0.445863294782 8129929 8130006 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8129928;78;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8226611-8226688-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8129929-8130006&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALDENEALSLVVVAEWLRRWTRNPLGSPRAGSNPADYVIFFSSAY Same 521791 chr17:8226611-8226688- 66909 66909 -466 0 1341 8221594 8227025 2014 2014;17863;26203;31694;31965;37522;40474;40990;66443;67460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8221594-8227025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.589743589744 1.04 0.0752 1.0 -0.479384615385 0.554584615385 0.029917093817 0.39176248573 28719 2913 2913;4601;11583;16441;20948;21333;25351;28719;65647;67294 0.0752 0.3126 -0.479384615385 0.554584615385 0.00558378677194 0.448990439658 32683 5986 5986;8484;15863;24228;24536;28672;31456;32683;52097;52689 0.0 0.0 ENST00000315684.12 UTR3 not annotated 6 tRNAs 66465 481121 chr10:75408408-75408497- NoOverlap chr10 75408408 75408497 - 2.47579000394 30 0.716455837847 1.43426331605 1.04152668789 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75408407;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75408408-75408497-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75408408-75408497&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00307695834304 -0.0511939521332 0.454559134977 77168166 77168255 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77168165;90;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75408408-75408497-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77168166-77168255&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HELWPRKMCSHLKAIRSIWCLVPGPIHHADNKESFSP Same 483035 chr10:75408408-75408497- 67719 67719 -1254 0 3027 75401238 75417825 4228 4228;6685;19248;23964;26231;42519;58489;66465;71052;72621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75401238-75417825&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.511111111111 1.19092627599 0.30062 0.9725 -0.512266666667 0.812886666667 0.0468241359823 0.438029961607 23869 9680 9680;11699;11870;23869;27311;40902;43730;53944;63556;72593 -8.72479333333 0.9201 -11.54755 2.82275666667 -0.0129795749645 0.535891052692 42843 8483 8483;11906;14750;22472;22714;29979;35309;42843;42916;72930 0.0 0.0 ENST00000425916.4 AntiNC not annotated putative regulatory region 66563 547212 chr21:8398715-8399026- NoOverlap chr21 8398715 8399026 - 0.689487505847 104 0.183344924321 0.860635573618 -0.17114806777 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398714;312;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398715-8399026-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398715-8399026&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0348549471608 -0.051740312002 0.381507697793 159118 159429 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159117;312;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398715-8399026-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159118-159429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAPAAPVHSRLPATAGYGPDAPAPSIFRAS*FGR*VVTHSLADSDFHGHRPAVYINQHLFWGLMSVGIGRLNPAFGSSRSASSAYQKWPTRHSHSTPGSTPASRASYPFK Same 548614 chr21:8398715-8399026- 68175 68175 -1612 32 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.615384615385 1.00633967301 -0.165240384615 0.2664 -0.3439125 0.178672115385 0.00288322422196 0.418574156791 40032 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -4.56866153846 0.2205 -4.94300576923 0.374344230769 -0.0221446864038 0.520628481928 49917 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0797275510423 chr11:1240851-1251743+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 66564 547308 chr21:8442944-8443255- NoOverlap chr21 8442944 8443255 - 0.689487505847 104 0.183344924321 0.860635573618 -0.17114806777 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442943;312;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442944-8443255-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442944-8443255&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0348549471608 -0.051740312002 0.381507697793 159118 159429 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159117;312;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442944-8443255-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159118-159429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAPAAPVHSRLPATAGYGPDAPAPSIFRAS*FGR*VVTHSLADSDFHGHRPAVYINQHLFWGLMSVGIGRLNPAFGSSRSASSAYQKWPTRHSHSTPGSTPASRASYPFK Same 548711 chr21:8442944-8443255- 68176 68176 -1612 32 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.615384615385 1.00633967301 -0.0436548076923 0.268 -0.299611538462 0.255956730769 0.00807324866705 0.427679151345 37632 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -2.93126634615 0.2442 -3.85547307692 0.924206730769 0.00392325245271 0.547025357553 33436 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 66589 577649 chr7:27133875-27133922+ NoOverlap chr7 27133875 27133922 + 4.27663767338 16 0.968001831083 1.96791876107 2.3087189123 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27133874;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27133875-27133922%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27133875-27133922&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.010031757311 -0.0519103470828 0.4961495891 27173494 27173541 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27173493;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27133875-27133922%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27173494-27173541&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARPSLADIFIFVRRTDLKFTSALDFALLK Same 578688 chr7:27133875-27133922+ 66874 66874 -285 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.458333333333 1.23076923077 1.0415625 1.0 0.62986875 0.41169375 0.0122366559741 0.31439079332 35835 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -2.80933125 0.9317 -4.41008125 1.60075 -0.00675119994881 0.427534960817 39016 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000317201.6,ENST00000467897.2 NCintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 66633 546272 chr21:8217397-8217639+ NoOverlap chr21 8217397 8217639 + 0.77603948705 81 0.24325763163 0.1213061506 0.65473333645 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8217396;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217397-8217639%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8217397-8217639&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0356826974368 -0.0521949077176 0.495914797343 116872 117114 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;116871;243;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217397-8217639%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A116872-117114&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAAAAGGGGAAGRSPPPGPPPGPRFRAAPRLGRRLAADLELVRTRGIRLFN*NKASRRPAAGVDAM*FLPSALNVKVKKFNEARVNGGSNYDSLK Same 547685 chr21:8217397-8217639+ 63825 63825 2808 40 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 1.20667808219 0.784567901235 0.0817 0.123314814815 0.66125308642 0.00883510152698 0.48755157593 37300 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -0.0385086419753 0.0728 -0.911538271605 0.87302962963 -0.0273913711828 0.547695517979 54712 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0885861678248 chr3:9838171-9838207- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 66647 506375 chr15:40324355-40324381+ NoOverlap chr15 40324355 40324381 + 6.49778899716 9 0.531263192696 1.86337778303 4.63441121413 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;40324354;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40324355-40324381%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A40324355-40324381&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0403661849573 -0.0522995598362 0.680945168991 40616556 40616582 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;40616555;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40324355-40324381%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A40616556-40616582&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HWPVWDFGGGGGGAQHHWVVPPRGAAR Same 508086 chr15:40324355-40324381+ 66475 66475 172 0 1677 40313687 40324514 2488 2488;29639;48301;50245;50817;59923;62142;66647;67529;68396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:40313687-40324514&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.851851851852 1.63636363636 4.11145555556 0.6586 -3.74485555556 7.85631111111 0.0274087210309 0.844511805987 29719 2234 2234;17663;29719;32124;51811;55466;56351;56933;64873;66727 -3.64925555556 0.4996 -20.8013666667 17.1521111111 0.0738835434747 0.943261233814 14593 2097 2097;14593;22796;39510;43273;44464;48619;53899;64626;73766 0.00279593805397 chr19:47274920-47275348+ 0.256617132932 chr19:47274920-47275348+ not annotated putative regulatory region 66667 484854 chr11:64251571-64251600+ NoOverlap chr11 64251571 64251600 + 5.67665985525 10 0.49747768368 0.505340185761 5.17131966949 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64251570;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64251571-64251600%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64251571-64251600&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0375368683868 -0.0524497029566 0.768518053382 64019043 64019072 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64019042;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64251571-64251600%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64019043-64019072&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGTDAAGPERAARWEQRRR Same 486801 chr11:64251571-64251600+ 65732 65732 935 0 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.866666666667 1.3125 -2.3522 0.5756 -8.22343 5.87123 -0.0203345702536 0.716379404721 54393 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 -8.45181 0.4268 -14.08223 5.63042 -0.0316528620397 0.525272454147 58611 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.117093064931 chr17:45121211-45121343- ENST00000279230.10 UTR5 under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 66724 546239 chr21:8211352-8211432+ NoOverlap chr21 8211352 8211432 + 2.41636293906 27 0.590298087818 1.47431853524 0.942044403818 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8211351;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8211352-8211432%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8211352-8211432&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0417532906321 -0.0528269754276 0.422338569384 110799 110879 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;110798;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8211352-8211432%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A110799-110879&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPALCTHRPSLLPIGWFSEALGSAPPGSAHGPGGALRRRSNLTI Same 547653 chr21:8211352-8211432+ 67423 67423 -699 0 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.716049382716 0.981818181818 -0.767618518519 0.2678 -1.41147777778 0.643859259259 -0.00420658587455 0.400796947972 43706 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -0.727944444444 0.2213 -1.49257777778 0.764633333333 -0.0217673635994 0.462104310027 49578 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 66736 546276 chr21:8217956-8218333+ NoOverlap chr21 8217956 8218333 + 0.923435706734 126 0.242491168538 0.408258734714 0.51517697202 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8217955;378;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217956-8218333%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8217956-8218333&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0679041428747 -0.0529250325887 0.51596793589 117431 117808 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;117430;378;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217956-8218333%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A117431-117808&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PGEAGGRAPRGSRFWRQAPGRAPAGRDPLRGQCQVGSLTGAVHLSNGNAGVLRRAQGGQKPPVEQKGKSSLDLDFQYEYRP*KRGLTILLTFWVLSRRCQKSYHRDNWLVAAKRS*RRRFLILRCRLFLSL Same 547689 chr21:8217956-8218333+ 67648 67648 -912 46 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.608465608466 0.957402717016 0.331608730159 0.0818 0.0589920634921 0.272616666667 0.0128174512322 0.496687539746 35595 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 0.288842063492 0.0581 -0.116873809524 0.405715873016 0.0108910698689 0.549758691434 30394 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000618951.1,ENST00000623664.1 NC,NCintron not annotated SSU-rRNA_Hsa repeat sequence 66801 476460 chr1:244052230-244052295- NoOverlap chr1 244052230 244052295 - 2.8368136937 22 0.993587049252 -0.627990890633 3.46480458433 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244052229;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244052230-244052295-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244052230-244052295&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0997413121135 -0.0533401340838 0.71348572471 244215532 244215597 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244215531;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244052230-244052295-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244215532-244215597&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DWRAAHKVAVIKLGG*EDREGR Same 478354 chr1:244052230-244052295- 68978 68978 -2177 6 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.545454545455 0.507692307692 0.0365909090909 0.9978 0.412381818182 -0.375790909091 -0.00250860965217 0.289583281181 42780 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -4.65392727273 0.915 -4.74953636364 0.0956090909091 -0.0167079852137 0.400131583028 45576 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.0 ENST00000358704.4,ENST00000622512.1 AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 66812 554107 chr3:173397951-173398001+ NoOverlap chr3 173397951 173398001 + 3.64378819571 17 0.630633832842 2.15130587185 1.49248232386 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;173397950;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A173397951-173398001%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A173397951-173398001&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0316841098266 -0.0534000929465 0.405453182204 173115741 173115791 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;173115740;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A173397951-173398001%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A173115741-173115791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GASDCAALTLPEPGRSAVASKALERRPSHCSSSP Same 555056 chr3:173397951-173398001+ 66830 66830 -18 0 512 173395998 173398001 763 763;48543;66812;70572 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:173395998-173398001&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.715789473684 -2.66649411765 0.9392 -7.19645294118 4.52995882353 -0.0192527468121 0.66615526226 53657 5999 5999;29552;51158;53657 -6.54762352941 0.4288 -13.5520176471 7.00439411765 0.00921839619086 0.645423057295 31080 10333 10333;31080;37421;52265 0.0 0.0 ENST00000413821.1,ENST00000482120.1,ENST00000423427.1 UTR5,NC,UTR5intron not annotated putative regulatory region 66848 546654 chr21:33064756-33064800+ NoOverlap chr21 33064756 33064800 + 4.49568669001 15 0.895155260548 3.5144333601 0.981253329913 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;33064755;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A33064756-33064800%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A33064756-33064800&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0336105970437 -0.0536460617929 0.311992214097 34437062 34437106 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;34437061;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A33064756-33064800%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A34437062-34437106&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GLSPFSPQTHRPVCSLSSPLFLLHSAGSMGKE*NRMAGPSAGK None NA NA 5 26161 33064756 33064800 Best 66848 66848 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:33064756-33064800&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.6 0.642857142857 3.13986666667 0.9639 2.45282666667 0.68704 0.0490839485008 0.325009975832 23356 Best 23356 23356 -0.172406666667 0.6805 -0.667666666667 0.49526 0.00389716620596 0.377643160886 33449 Best 33449 33449 0.0 0.0 ENST00000453716.1,ENST00000454622.2 NC,AntiNCintron not annotated potentially spurious 66958 588880 chr9:35829442-35829468+ NoOverlap chr9 35829442 35829468 + 6.84097788069 9 0.820503039089 4.29676659902 2.54421128167 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;35829441;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35829442-35829468%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A35829442-35829468&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00720890082046 -0.0543117687971 0.407849550092 35829439 35829465 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;35829438;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A35829442-35829468%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A35829439-35829465&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EDTGGHPPGVGSGAAGQLCERPALACPAPPPPRAMAQPLSRPLVLSQSPPWPPAPPSPR Same 589824 chr9:35829442-35829468+ 64525 64525 2433 0 277 35829249 35842438 362 362;425;536;1007;2241;12378;33483;41023;50301;66958 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:35829249-35842438&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.5 -1.28685555556 0.938 -0.942533333333 -0.344322222222 -0.0353212278147 0.216024648895 63888 527 527;571;572;815;1277;3226;54814;57000;63888;72554 -18.1498555556 0.6726 -10.8603 -7.28955555556 0.0482795942873 0.067710349322 19083 753 753;986;1017;1241;1441;19083;51774;53783;58586;72919 0.0 0.227584066043 chr19:39515213-39516021+ ENST00000377991.8,ENST00000464519.6 UTR5intron,NCintron coding exon(s) TMEM8B 5' extension by 5 exons 66990 590779 chr9:131546695-131546730+ NoOverlap chr9 131546695 131546730 + 4.14896655083 12 0.47321024389 1.83226656417 2.31669998666 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;131546694;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A131546695-131546730%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A131546695-131546730&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0203325944517 -0.0546203252206 0.457106231254 134422082 134422117 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;134422081;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A131546695-131546730%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A134422082-134422117&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HLPSGEPGPPFPAGMPGGGSGVK Same 591732 chr9:131546695-131546730+ 66141 66141 849 0 82 131546695 131558199 95 95;333;354;38371;66990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:131546695-131558199&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.514285714286 -1.564275 0.6917 -0.429825 -1.13445 -0.00464070201604 0.180781642022 43932 193 193;548;718;6528;43932 -3.4155 0.3638 -1.27371666667 -2.14178333333 -0.0284251721166 0.256127015162 55696 819 819;1673;1875;4514;55696 0.0 0.0784763809844 chr17:42538670-42538755+ protein-coding gene protein-coding gene ENSG00000283526 67001 528224 chr19:37830164-37830193+ NoOverlap chr19 37830164 37830193 + 6.21980000734 10 0.816800183108 3.42446991205 2.79533009529 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;37830163;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830164-37830193%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A37830164-37830193&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00781792492713 -0.0546892403249 0.464670496062 38320804 38320833 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;38320803;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A37830164-37830193%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A38320804-38320833&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLRLLAKQSGPK Same 529673 chr19:37830164-37830193+ 64696 64696 2305 0 2752 37822686 37830193 3865 3865;20012;66021;67001 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:37822686-37830193&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.625 4.81349 0.9222 9.82912 -5.01563 -0.0205182681583 -0.0313398766084 54524 16693 16693;25935;53649;54524 15.93192 0.4742 22.75769 -6.82577 0.0188308809482 0.0735552104229 27389 7159 7159;7167;27389;47287 0.0 0.0 ENST00000443870.2,ENST00000592640.5 NC,AntiNCintron pseudogene zinc finger protein pseudogene (ENSG00000267640) 67025 546342 chr21:8392842-8393213+ NoOverlap chr21 8392842 8393213 + 0.838433068125 124 0.175446757089 0.966219335254 -0.127786267128 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8392841;372;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392842-8393213%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8392842-8393213&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0354051727185 -0.0548250713054 0.428566956472 153226 153597 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153225;372;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8392842-8393213%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153226-153597&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSPTWITVVILELIHADGR*PPSRGGCVHLSDQNQPGQPLSGPGRGAGAGGFGDSR*PRADRTPPVAATTHSNVCPINFRW*SPCLPW*PRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRPGEVVTKNNNTGLFRGPVIGMSPL Same 547759 chr21:8392842-8393213+ 69833 69833 -2808 74 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.631720430108 1.02390265102 -1.43244596774 0.2478 -1.24912419355 -0.183321774194 -0.024362494206 0.43258856568 57058 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -1.43244596774 0.0775 -1.24912419355 -0.183321774194 -0.00611365383479 0.521174917492 38642 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0 ENST00000623860.2 NCintron not annotated LSU-rRNA_Hsa 67026 546404 chr21:8437052-8437423+ NoOverlap chr21 8437052 8437423 + 0.838433068125 124 0.175446757089 0.966219335254 -0.127786267128 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8437051;372;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437052-8437423%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8437052-8437423&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0354051727185 -0.0548250713054 0.428566956472 153226 153597 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;153225;372;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8437052-8437423%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A153226-153597&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SSPTWITVVILELIHADGR*PPSRGGCVHLSDQNQPGQPLSGPGRGAGAGGFGDSR*PRADRTPPVAATTHSNVCPINFRW*SPCLPW*PRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRPGEVVTKNNNTGLFRGPVIGMSPL Same 547817 chr21:8437052-8437423+ 69834 69834 -2808 74 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.631720430108 1.02390265102 -4.4261233871 0.31 -3.76419354839 -0.66192983871 -0.08785621341 0.364526270795 73536 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -5.90953225806 0.2392 -5.15612258065 -0.753409677419 -0.0423717038624 0.486650941811 66934 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0 not annotated LSU-rRNA_Hsa 67177 579704 chr7:142721129-142721155+ NoOverlap chr7 142721129 142721155 + 6.03409989675 9 0.699463391063 -0.543455627229 6.57755552398 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;142721128;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142721129-142721155%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A142721129-142721155&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.07743866461 -0.0560579040646 0.890606351728 142428953 142428979 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;142428952;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A142721129-142721155%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A142428953-142428979&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FSLILESASTNQTSMYLCASSLCTAQHSR None NA NA 0 499 142715668 142721155 741 741;2270;13758;67177 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:142715668-142721155&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.0 13.9388777778 0.9894 -3.13425555556 17.0731333333 0.662666346173 1.01012005302 2238 1200 1200;1687;1696;2238 19.7261888889 0.533 -3.98915555556 23.7153444444 0.63926359137 1.01701919752 3019 2138 2138;2262;2888;3019 0.0 0.0 ENST00000390400.2,ENST00000610566.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 67233 466589 chr1:110228004-110228042+ NoOverlap chr1 110228004 110228042 + 4.47943081764 13 0.870486117225 0.00260002796467 4.47683078968 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;110228003;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A110228004-110228042%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A110228004-110228042&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0571527085638 -0.0564694442589 0.737524815292 110770626 110770664 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;110770625;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A110228004-110228042%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A110770626-110770664&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VTFEREQVGCWETGPAK Same 468449 chr1:110228004-110228042+ 65436 65436 1797 0 138 110228004 110230556 166 166;58328;63100;67233 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:110228004-110230556&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.564102564103 0.40625 1.0706 0.9996 -2.80835384615 3.87895384615 0.0366598334525 0.586203910654 26525 112 112;26525;33496;69315 -0.532884615385 0.4957 -11.3037461538 10.7708615385 0.107030964737 0.779871538353 10859 695 695;10859;41544;59966 0.0 0.0 ENST00000369787.7,ENST00000412512.2 CDSintron,NCintron coding exon(s) KCNC4 alternative final exon 67341 512308 chr16:72787179-72787319+ NoOverlap chr16 72787179 72787319 + 2.44902548939 47 0.776371242263 2.45965102886 -0.0106255394664 ENST00000268489.9,ENST00000397992.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72787178;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72787179-72787319%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72787179-72787319&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.151417657005 -0.057355137954 0.391415091594 72821078 72821218 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72821077;141;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72787179-72787319%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72821078-72821218&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FLYLNSFVCIVHLQSLQSEGVRSYTGQTTVLGAAGVFGTLHRARRSVGLLAEIRVRLLRIVVCWHRGLNP Same 513952 chr16:72787179-72787319+ 68409 68409 -1068 0 1044 72786749 72802320 1595 1595;21079;37333;39725;51719;54149;65275;67341;70055 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72786749-72802320&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.617021276596 0.745243128964 0.0206340425532 0.9564 -0.379721276596 0.400355319149 0.0644650141024 0.455074711716 20517 2453 2453;8633;10458;20402;20517;20622;22628;49851;70811 -18.6288446809 0.9743 -24.3943829787 5.76553829787 -0.0326113223525 0.623172454188 59430 1956 1956;9416;10906;18989;19008;25678;39101;45598;59430 0.0 0.0 ENST00000563328.4,ENST00000268489.9 NC,AntiCDS not annotated putative regulatory region 67342 518001 chr17:48311030-48311227+ NoOverlap chr17 48311030 48311227 + 1.48690457461 66 0.99042242059 0.823731807089 0.663172767526 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48311029;198;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48311030-48311227%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48311030-48311227&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0629701370117 -0.0573690846319 0.510301314179 46388392 46388589 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46388391;198;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48311030-48311227%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46388392-46388589&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPFFIPPSPPPQAEPR*VNACARSGQTPGSGETPFTFAYRRSLTMKAHLFPSRSTNRVSPNSLQTTEAWPLDGGTLSSGYGYGTADLGLNT Same 519402 chr17:48311030-48311227+ 60588 60588 6754 8 10925 48307328 48313286 16723 16723;17599;22434;62115;67342 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48307328-48313286&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.540404040404 0.694736842105 -0.523365151515 0.9994 -2.02361363636 1.50024848485 0.168320393113 0.556252322303 10392 9986 9986;10392;16724;44437;45878 -5.51919545455 0.819 -5.73253636364 0.213340909091 0.060690976258 0.505249959584 16697 Best 16697 16697;17787;63179;68455;70554 0.0 0.0 ENST00000336915.10,ENST00000581400.2 AntiCDSintron,AntiNCintron not annotated potentially spurious 67356 548397 chr22:29825619-29825681+ NoOverlap chr22 29825619 29825681 + 2.66022377639 21 0.955019309929 -1.46298086359 4.12320463998 ENST00000307790.7,ENST00000397771.6,ENST00000431535.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;29825618;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A29825619-29825681%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A29825619-29825681&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.150733342991 -0.0574248849433 0.784220530165 30221608 30221670 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;30221607;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A29825619-29825681%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A30221608-30221670&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTTATNQWHVMCFVLALILIECYLAPEFIVRQGQEPVEVIGYEGGAFQVLLH Same 549764 chr22:29825619-29825681+ 68365 68365 -1009 0 623 29825619 29825825 956 956;67356 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:29825619-29825825&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.539682539683 0.663157894737 -1.00390952381 1.0 -3.05133809524 2.04742857143 0.00478826842998 0.488766559628 39127 10912 10912;39127 -16.1091190476 0.8589 -26.391447619 10.2823285714 -0.0192094200898 0.695837022721 47474 44702 44702;47474 0.0 0.0 ENST00000307790.7,ENST00000412689.5,ENST00000542393.5,ENST00000449900.6 AntiCDS,AntiNC,AntiCDSintron,AntiNCintron not annotated potentially spurious 67419 514855 chr16:72425674-72425721- NoOverlap chr16 72425674 72425721 - 4.02199375629 16 0.917799649042 1.15309376828 2.86889998801 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72425673;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425674-72425721-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72425674-72425721&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0149909335935 -0.05787683297 0.572878091173 72459573 72459620 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72459572;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425674-72425721-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72459573-72459620&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LFPQGTDASRLAHSAFR Same 516505 chr16:72425674-72425721- 66438 66438 981 0 5346 72425674 72429311 7419 7419;20359;21636;23849;24685;27931;29808;67419;67757;69819;71722 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425674-72429311&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.604166666667 0.727272727273 0.01475 0.9999 -3.06329375 3.07804375 0.0240846632714 0.543962470535 30975 9185 9185;30001;30975;34321;44342;61179;63064;63782;69032;69981;73105 -8.96448125 0.7865 -16.04085625 7.076375 -0.0171560902477 0.625637286404 45925 15117 15117;16880;44158;45925;52647;58331;62919;63425;64625;67483;67573 0.0 0.0 ENST00000561611.2,ENST00000624829.3 NC,NCintron not annotated potentially spurious 67420 577648 chr7:27133757-27133807+ NoOverlap chr7 27133757 27133807 + 3.60190009895 17 0.91810482948 0.0473470617743 3.55455303718 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27133756;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27133757-27133807%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27133757-27133807&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0575408693658 -0.0578773748849 0.674869201218 27173376 27173426 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27173375;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27133757-27133807%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27173376-27173426&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IILNIFVTAFPLECNPVPSFKVTEQ*HRVHFVSY Same 578687 chr7:27133757-27133807+ 66760 66760 660 3 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.509803921569 0.607142857143 -3.57707647059 1.0 -2.27793529412 -1.29914117647 -0.0524044478351 0.199584310271 71559 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -10.3785764706 0.8646 -6.62618823529 -3.75238823529 -0.0425155980729 0.216072746445 67036 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000317201.6,ENST00000467897.2 NCintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 67422 546357 chr21:8395600-8395881+ NoOverlap chr21 8395600 8395881 + 0.714288292889 94 0.22099998539 1.04140106002 -0.327112767132 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8395599;282;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395600-8395881%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8395600-8395881&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.045563560535 -0.0578897777811 0.358240182701 155990 156271 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155989;282;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8395600-8395881%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155990-156271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QIDLVRLLAVDHSARASMKNAASCEN*CELQDTLIIDTSNALAAPGSSRGYACLSVACRSIAPGGASGLLGVRGWGFPRRARRGPSVPLSADPAASALLLPPRPPLPPPPAGPAWSR Same 547770 chr21:8395600-8395881+ 68742 68742 -1320 24 1814 8392730 8401986 2662 2662;3569;6399;24647;26042;35388;37092;37325;39845;42966;43863;44305;44433;46005;46742;46881;47388;47426;47496;48212;48623;49390;49470;49566;50454;51913;52929;53307;53629;54686;55110;55270;56798;57352;58279;58780;60187;60818;63701;63893;67025;67422 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8392730-8401986&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.670212765957 1.07512895268 -4.44593829787 0.2727 -2.39031489362 -2.05562340426 -0.0650558796261 0.146317351588 72837 21416 21416;23671;23861;24632;27323;29718;30392;32859;34103;35097;36463;36712;36915;37342;37558;38394;39039;39309;39396;39518;39764;39786;41512;41645;45294;47776;48091;48142;50148;51252;53236;53430;55634;55642;56418;57058;60285;64029;65616;71920;72837;72874 -17.1327159574 0.598 -14.9954234043 -2.13729255319 -0.0522400995214 0.407706212111 72121 7542 7542;10269;10765;18713;19922;21115;21493;23020;23207;24223;24768;26343;26522;27424;29117;35283;35760;37535;38642;43321;43617;46449;48107;48549;49697;51048;51711;53095;54236;57276;58046;60727;61663;61953;62453;63797;66915;70474;71902;72060;72118;72121 0.0 0.0370471950701 chr16:376544-376812- ENST00000613359.1,ENST00000623860.2 NC,NCintron not annotated LSU-rRNA_Hsa 67423 546416 chr21:8439816-8440097+ NoOverlap chr21 8439816 8440097 + 0.714288292889 94 0.22099998539 1.04140106002 -0.327112767132 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8439815;282;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439816-8440097%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8439816-8440097&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.045563560535 -0.0578897777811 0.358240182701 155990 156271 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;155989;282;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8439816-8440097%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A155990-156271&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QIDLVRLLAVDHSARASMKNAASCEN*CELQDTLIIDTSNALAAPGSSRGYACLSVACRSIAPGGASGLLGVRGWGFPRRARRGPSVPLSADPAASALLLPPRPPLPPPPAGPAWSR Same 547829 chr21:8439816-8440097+ 68743 68743 -1320 24 1815 8436296 8446217 2663 2663;2742;6400;24648;26043;36480;37093;39823;39995;42967;43491;43843;44306;45200;46006;46882;47389;47427;47487;47612;48213;48624;49500;49555;50455;51914;52357;52846;52930;53308;54874;55111;55945;56775;56799;57353;60188;60283;63702;63894;67026;67423 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8436296-8446217&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.670212765957 1.07512895268 -4.85709893617 0.2973 -3.37938617021 -1.47771276596 -0.0703385086731 0.182924864474 73084 20706 20706;20724;25364;26401;26721;28250;28495;29348;30082;32951;34327;34953;34995;35415;35872;36912;37364;37844;39107;39946;40374;41298;41482;41703;42252;42801;45683;47520;52344;52837;53240;54057;54297;56020;58244;69724;70940;72609;73084;73116;73533;73536 -15.811962766 0.5653 -14.2266255319 -1.58533723404 -0.0471710659971 0.425475126807 70061 8250 8250;12220;15605;16258;17132;17184;18177;19823;20322;21235;21806;23119;23193;24944;27252;27799;32658;33064;33293;33698;36478;37852;40572;41886;42511;42953;46325;56541;58237;59883;60499;60745;62078;63301;65653;66934;67006;67177;68216;69479;70061;71054 0.0 0.0148987554621 chr7:44225763-44225913- ENST00000619471.1 NC not annotated LSU-rRNA_Hsa 67451 713612 chr6:44387871-44387909- Extension chr6 44387871 44387909 - 3.40451533061 13 0.891981383993 -3.1731845341 6.57769986471 chr6:44387823-44387909- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;44387870;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A44387871-44387909-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A44387871-44387909&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.246898926791 -0.0580526400074 0.945507338822 44355608 44355646 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;44355607;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A44387871-44387909-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A44355608-44355646&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RERRAADGGKRRLTSVFLHTPPLIIIR Same 714215 chr6:44387871-44387909- 66784 66784 667 0 1423 44387871 44387962 2126 2126;67451 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:44387871-44387962&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.692307692308 1.39285714286 -3.95512307692 0.9073 -7.80858461538 3.85346153846 -0.0341598851013 0.579682289578 63158 29274 29274;63158 -21.7586846154 0.6435 -22.3917307692 0.633046153846 0.0145552520945 0.250689733973 28923 Best 28923 28923;32209 0.0 0.0 ENST00000371477.3 AntiCDSintron not annotated putative regulatory region 67460 520374 chr17:8222267-8222305- NoOverlap chr17 8222267 8222305 - 4.79209226656 13 0.657688492937 2.0558614685 2.73623079807 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;8222266;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8222267-8222305-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A8222267-8222305&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.026483892431 -0.0581313224593 0.514301189096 8125585 8125623 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;8125584;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A8222267-8222305-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A8125585-8125623&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLQVPPR*YSGEYPRLSRGRPGFDSPTGR Same 521784 chr17:8222267-8222305- 67059 67059 401 2 1341 8221594 8227025 2014 2014;17863;26203;31694;31965;37522;40474;40990;66443;67460 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:8221594-8227025&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.589743589744 1.2 -1.58918461538 0.9948 -1.54262307692 -0.0465615384615 -0.0412915568375 0.263320604898 67294 2913 2913;4601;11583;16441;20948;21333;25351;28719;65647;67294 -1.58918461538 0.3109 -1.54262307692 -0.0465615384615 -0.0251785384192 0.341555824379 52689 5986 5986;8484;15863;24228;24536;28672;31456;32683;52097;52689 0.0 0.0 ENST00000315707.3 NC not annotated 6 tRNAs 67476 475507 chr1:204378133-204378165- NoOverlap chr1 204378133 204378165 - 5.46613638509 11 0.576607919432 1.96931814606 3.49681823904 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;204378132;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204378133-204378165-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A204378133-204378165&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0356913710643 -0.058240371998 0.580711165247 204347261 204347293 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;204347260;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A204378133-204378165-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A204347261-204347293&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GNTPARTATCSLR Same 477392 chr1:204378133-204378165- 67127 67127 349 0 537 204359879 204378165 815 815;1426;2477;10157;27979;29433;67476 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:204359879-204378165&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.34375 0.881754545455 0.6326 -1.26739090909 2.14914545455 -0.0164322938756 0.418198194425 51633 683 683;986;1894;9248;41567;43122;51633 -1.70231818182 0.3459 -6.81710909091 5.11479090909 -0.013172953177 0.534356264777 42976 208 208;1881;2415;9734;19689;34362;42976 0.0 0.0 ENST00000443515.1 AntiNCintron not annotated putative regulatory region 67488 541870 chr2:218010247-218010282- NoOverlap chr2 218010247 218010282 - 3.13238319258 12 0.467324076193 1.0348416244 2.09754156818 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;218010246;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A218010247-218010282-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A218010247-218010282&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00381011823686 -0.0583540816578 0.443665309866 218874970 218875005 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;218874969;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A218010247-218010282-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A218874970-218875005&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPTPPQPRNSAPGAAGPPLPTLAPQAPTLGVSMTR Same 543244 chr2:218010247-218010282- 66361 66361 1127 0 1012 218010106 218010282 1546 1546;67488 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:218010106-218010282&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.777777777778 0.96256684492 5.12824166667 0.731 4.74064166667 0.3876 0.00931207459574 0.266046252259 37085 1177 1177;37085 0.0778 0.315 2.414 -2.3362 -0.0244611178205 0.249013120881 52033 3103 3103;52033 0.0 0.0 coding exon(s) TNS1 alternative first exon 67529 506374 chr15:40324058-40324210+ NoOverlap chr15 40324058 40324210 + 1.81227059531 51 0.495165732426 1.06572546474 0.74654513057 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;40324057;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40324058-40324210%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A40324058-40324210&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.04741023061 -0.0586631494719 0.504880117291 40616259 40616411 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;40616258;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40324058-40324210%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A40616259-40616411&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GAPGQRPGPPHEGARRGPGRAGQAGHLHRGQEGEDGGQDQQEVGPARHRVRLRALRVAGRHR Same 508085 chr15:40324058-40324210+ 66867 66867 662 0 1677 40313687 40324514 2488 2488;29639;48301;50245;50817;59923;62142;66647;67529;68396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:40313687-40324514&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.692810457516 1.08974358974 -0.917729411765 0.6222 -1.737 0.819270588235 -0.0166821332818 0.485201134019 51811 2234 2234;17663;29719;32124;51811;55466;56351;56933;64873;66727 -19.838954902 0.8113 -19.8149960784 -0.0239588235294 -0.0746052049278 0.416470933741 73766 2097 2097;14593;22796;39510;43273;44464;48619;53899;64626;73766 0.0 0.0949961073768 chr19:47274920-47275348+ not annotated putative regulatory region 67562 473173 chr1:90834223-90834252- NoOverlap chr1 90834223 90834252 - 6.1623097837 10 0.948393987945 2.53887995183 3.62342983186 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90834222;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90834223-90834252-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90834223-90834252&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00714954632784 -0.0589158148951 0.573488966798 91299780 91299809 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91299779;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90834223-90834252-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91299780-91299809&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTGDLWGRLHNPALTSPFLR Same 475052 chr1:90834223-90834252- 66869 66869 693 0 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.3125 -1.60196 1.0 -0.44269 -1.15927 -0.0359530646907 0.169089142961 64265 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -12.8022 0.9214 -13.5821 0.7799 -0.0395694309061 0.31801120771 64903 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 67565 574585 chr6:34236758-34236784- NoOverlap chr6 34236758 34236784 - 6.71912228399 9 0.708895162042 2.88442225589 3.8347000281 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;34236757;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34236758-34236784-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A34236758-34236784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0246426682151 -0.0589465708523 0.577275191863 34204535 34204561 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;34204534;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A34236758-34236784-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A34204535-34204561&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KGGRPPAAAAAAAR Same 575617 chr6:34236758-34236784- 66645 66645 920 0 170 34224086 34247507 204 204;1024;6866;12781;19286;28180;31185;36708;41043;44685;45288;46000;46226;46344;49450;50891;54663;58956;59132;62579;63710;63841;67565 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:34224086-34247507&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.888888888889 0.964285714286 2.89657777778 0.687 0.554177777778 2.3424 -0.0146502995698 0.408029498248 50362 323 323;627;2653;7401;16960;26270;31750;31808;33745;34108;37883;41060;41250;42903;43370;50362;51492;54680;55937;64278;65608;68214;70159 2.03367777778 0.2735 1.88796666667 0.145711111111 -0.022685420426 0.315875111069 50398 1627 1627;2221;3048;5055;18559;25977;34965;36549;38364;43044;46067;46759;47951;50398;53241;54830;55245;58879;66512;68249;68550;70680;71682 0.0 0.0 protein-coding gene protein-coding gene ENSG00000186577 67574 563912 chr5:37840022-37840051+ NoOverlap chr5 37840022 37840051 + 6.10128990412 10 0.653688868544 2.3666398406 3.73465006351 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;37840021;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37840022-37840051%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A37840022-37840051&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0309167926264 -0.0590011283906 0.588780388426 37840124 37840153 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;37840123;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A37840022-37840051%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A37840124-37840153&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRQERRLVF* Same 564900 chr5:37840022-37840051+ 67156 67156 418 0 1098 37834655 37842122 1665 1665;3432;9737;17708;23431;43248;66339;67574 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:37834655-37842122&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.7 0.576923076923 2.04386 0.8416 1.88274 0.16112 -0.0266272606262 0.243866865494 58453 4518 4518;14736;23580;58453;64403;65427;67583;67906 -5.94051 0.4157 -1.08574 -4.85477 -0.0152394205355 0.154998901333 44494 5584 5584;29735;41849;43350;44494;45609;51811;60370 0.0 0.12656440527 chr16:69329997-69330570- not annotated putative regulatory region 67627 518107 chr17:48625697-48625723+ NoOverlap chr17 48625697 48625723 + 6.7824332979 9 0.669962615396 4.30002219809 2.4824110998 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48625696;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48625697-48625723%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48625697-48625723&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0258856170505 -0.0593581092623 0.400924609282 46703059 46703085 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46703058;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48625697-48625723%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46703059-46703085&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLLPFPSPPPSWPSAWVFPHFL Same 519508 chr17:48625697-48625723+ 66805 66805 822 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.814814814815 0.635294117647 -0.295044444444 0.8798 -1.31146666667 1.01642222222 -0.0363934283051 0.311938185991 64530 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -8.43084444444 0.5715 -7.33263333333 -1.09821111111 -0.0335019825807 0.265942380768 60208 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000311177.6,ENST00000567101.2 AntiCDSintron,AntiNCintron not annotated putative regulatory region 67669 482198 chr10:113121307-113121456- NoOverlap chr10 113121307 113121456 - 1.53435399294 50 0.746416418708 -0.167464034855 1.70181802779 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113121306;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113121307-113121456-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113121307-113121456&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0978728460313 -0.0597337890416 0.6334425855 114881066 114881215 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114881065;150;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113121307-113121456-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114881066-114881215&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NFHQLVQEKRREKPQCWRSKSQALRQICHVERIDQQDGNF*WHVVMKSQPQGATCFAPHR Same 484122 chr10:113121307-113121456- 67959 67959 -290 14 719 113118964 113126911 1110 1110;6516;16816;37245;38490;54651;58469;62875;67669;70173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118964-113126911&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.52 0.40404040404 -3.281964 0.9966 -4.07079 0.788826 -0.0584431088887 0.436487940416 72358 4406 4406;18572;33940;40718;63931;65767;72176;72358;72407;73429 -8.110912 0.9057 -10.06616 1.955248 0.0219726828613 0.559517545468 26332 6655 6655;10141;25415;26332;35901;38764;51629;51984;53928;72240 0.0 0.0 ENST00000346198.5 AntiCDSintron not annotated putative regulatory region 67686 588639 chr9:23821827-23821946+ NoOverlap chr9 23821827 23821946 + 2.41497500837 40 0.508542763409 2.41180248335 0.00317252501845 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23821826;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821827-23821946%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23821827-23821946&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0044325293697 -0.0598202117472 0.3674474643 23821825 23821944 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23821824;120;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821827-23821946%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23821825-23821944&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGNRPPHPAGYCLSDAQAPRSRRL*RGGKEGLAWKSARRRGRRRVRGAAAAAGACPARPPFGSVPAGR Same 589585 chr9:23821827-23821946+ 67286 67286 400 8 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.808333333333 1.15789473684 -5.43694 0.7019 -5.69485 0.25791 -0.0434369395391 0.354486746082 68446 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 -7.9376425 0.3312 -10.168165 2.2305225 -0.040315126465 0.551273107193 65485 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000544538.5,ENST00000380117.5,ENST00000462649.1 AntiUTR5,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 67757 514863 chr16:72426579-72426608- NoOverlap chr16 72426579 72426608 - 5.57513023615 10 0.896116578927 0.265479847789 5.30965038836 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72426578;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72426579-72426608-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72426579-72426608&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0664512510941 -0.060434207397 0.784993086312 72460478 72460507 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72460477;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72426579-72426608-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72460478-72460507&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GFPSGKWHRLWHVFMPLPMAFLFR Same 516513 chr16:72426579-72426608- 65759 65759 1998 0 5346 72425674 72429311 7419 7419;20359;21636;23849;24685;27931;29808;67419;67757;69819;71722 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425674-72429311&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.625 -1.25221 0.9999 -3.67775 2.42554 -0.0446361083947 0.437771205495 69032 9185 9185;30001;30975;34321;44342;61179;63064;63782;69032;69981;73105 -7.57884 0.6265 -13.92366 6.34482 -0.0391799266021 0.558189833399 64625 15117 15117;16880;44158;45925;52647;58331;62919;63425;64625;67483;67573 0.0 0.0 ENST00000561611.2,ENST00000624829.3,ENST00000564508.2 NC,NCintron,AntiNC not annotated potentially spurious 67770 478903 chr10:113121389-113121433+ NoOverlap chr10 113121389 113121433 + 4.22409995397 15 0.745032934056 2.42194003264 1.80215992133 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113121388;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113121389-113121433%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113121389-113121433&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0131445766224 -0.060517967957 0.419924090554 114881148 114881192 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114881147;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113121389-113121433%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114881148-114881192&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QICRKAWLFERQHCGFSLLFSCTNW Same 480804 chr10:113121389-113121433+ 67136 67136 634 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.622222222222 0.459183673469 -2.25371333333 0.9967 -4.73487333333 2.48116 -0.0364798951205 0.481734244569 64584 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -8.73358666667 0.9031 -12.4218066667 3.68822 -0.0404450255548 0.484841429167 65581 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 67777 572280 chr6:99409275-99409340+ NoOverlap chr6 99409275 99409340 + 2.88839545033 22 0.952676224363 0.0490544655106 2.83934098482 ENST00000369239.9,ENST00000438806.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;99409274;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99409275-99409340%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A99409275-99409340&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0660816836928 -0.0605864147933 0.633993285377 99857151 99857216 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;99857150;66;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A99409275-99409340%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A99857151-99857216&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MMMAFLFDSGEVLEVLEVLVANKEDEIHLAVDQKQPHAER Same 573305 chr6:99409275-99409340+ 67756 67756 21 0 559 99400282 99414614 850 850;6627;41535;67777 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:99400282-99414614&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.560606060606 0.194117647059 0.378386363636 0.9705 0.390613636364 -0.0122272727273 0.00328703545024 0.320127551974 39855 2736 2736;9278;39855;60784 -18.5042136364 0.8189 -10.2057272727 -8.29848636364 0.00537015181502 0.0873735866947 32779 3532 3532;3708;32779;67353 0.0 0.0 ENST00000369239.9,ENST00000463021.1 AntiCDS,AntiNC not annotated putative regulatory region 67786 580622 chr7:25753552-25753602- NoOverlap chr7 25753552 25753602 - 3.4722880686 17 1.0 -0.952041177627 4.42432924623 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;25753551;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A25753552-25753602-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A25753552-25753602&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.124584310661 -0.0606962518919 0.779402701747 25793172 25793222 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;25793171;51;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A25753552-25753602-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A25793172-25793222&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CRHSSC*WPDRQFPQRYMRPFGVSVR Same 581591 chr7:25753552-25753602- 70292 70292 -2506 6 1429 25753491 25753602 2133 2133;67786 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:25753491-25753602&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.56862745098 0.728571428571 -5.01679411765 0.9713 -6.61124705882 1.59445294118 -0.0556650638373 0.418988265308 72057 6833 6833;72057 -15.3419 0.8843 -17.5920647059 2.25016470588 -0.0424503431955 0.392103508757 66979 12335 12335;66979 0.0 0.0 not annotated putative regulatory region 67864 478898 chr10:113119150-113119224+ NoOverlap chr10 113119150 113119224 + 2.46047993958 25 0.845811245899 0.0788799417019 2.38159999788 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113119149;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119150-113119224%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113119150-113119224&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0646434099591 -0.0612949454646 0.600401428668 114878909 114878983 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114878908;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119150-113119224%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114878909-114878983&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WDRCEFVCSLWSQN*HLTLGQWSIGEMEHLGK Same 480799 chr10:113119150-113119224+ 66849 66849 1015 12 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.52 1.00267379679 0.123076 0.9421 -0.769704 0.89278 0.0124594493888 0.416157188362 35756 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -12.240456 0.9081 -7.637156 -4.6033 -0.0499366112537 0.216040488955 71314 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 67929 546258 chr21:8215685-8215822+ NoOverlap chr21 8215685 8215822 + 1.38780433393 46 0.390798809796 1.34094131317 0.0468630207622 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8215684;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215685-8215822%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8215685-8215822&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0361107319127 -0.0617337655543 0.394289374444 115150 115287 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;115149;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215685-8215822%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A115150-115287&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EARLAGVEPGVECECLVGHFW*AELALRDEPNAGLRRPMPTLIRPQK Same 547671 chr21:8215685-8215822+ 67103 67103 826 22 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.659420289855 1.01470588235 -0.0707586956522 0.2731 0.145034782609 -0.215793478261 -0.0122297870001 0.393923290565 48640 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -2.90474565217 0.1947 -1.90522608696 -0.999519565217 -0.045568318721 0.444530860329 69072 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.195807062451 chr3:9841979-9842082- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 68000 541019 chr2:173198521-173198559- NoOverlap chr2 173198521 173198559 - 4.88364619704 13 0.9442188848 1.68543073076 3.19821546628 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;173198520;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198521-173198559-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A173198521-173198559&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0140242515954 -0.06226729394 0.573649105924 174063249 174063287 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;174063248;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198521-173198559-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A174063249-174063287&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSHLSDSFLYYSDSCWER Same 542390 chr2:173198521-173198559- 67582 67582 418 0 8077 173198177 173198791 11645 11645;14566;27301;64264;68000;70384;71375 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:173198177-173198791&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.487179487179 0.443181818182 0.510546153846 0.989 0.782076923077 -0.271530769231 -0.0227653088138 0.239976861469 56025 17915 17915;26281;30225;52527;56025;63590;73136 -1.0155 0.5855 1.32721538462 -2.34271538462 -0.0311390020047 0.255877256356 58152 26199 26199;30281;33015;38868;44044;58152;65076 0.0 0.0 ENST00000423106.2,ENST00000419609.5,ENST00000338983.7,ENST00000476618.5 NC,NCintron,AntiCDSintron,AntiNCintron not annotated potentially spurious 68005 466649 chr1:111987704-111987784+ NoOverlap chr1 111987704 111987784 + 2.58622221262 27 0.856097250833 1.44878147225 1.13744074037 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;111987703;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111987704-111987784%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A111987704-111987784&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00562531599931 -0.0623035691657 0.44724218737 112530326 112530406 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;112530325;81;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111987704-111987784%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A112530326-112530406&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IPATGTTVRPHFQPMALHMPQMPRFY*DVDALQMK Same 468509 chr1:111987704-111987784+ 67000 67000 1005 4 3139 111987704 111990382 4367 4367;39514;56303;64208;68005;68136;69319 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:111987704-111990382&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.567901234568 0.467307692308 -2.40914074074 0.9995 -2.3898962963 -0.0192444444444 -0.0558703717652 0.334108178733 72081 9251 9251;20935;24066;40454;53078;72081;72576 -3.70846666667 0.3606 -3.69221481481 -0.0162518518519 -0.0261170305148 0.423673269539 53572 11706 11706;24170;34786;49854;53572;64032;73297 0.0 0.0 ENST00000302127.4 AntiUTR5intron not annotated putative regulatory region 68017 515936 chr17:2393803-2393928+ NoOverlap chr17 2393803 2393928 + 1.22010712751 42 0.461936369879 -0.00321665690059 1.22332378441 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2393802;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2393803-2393928%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2393803-2393928&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0721566438391 -0.0623810318594 0.541705929089 2297097 2297222 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2297096;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2393803-2393928%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2297097-2297222&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APHGPGDAEAAGARERRGRGAAPSSAHARPPGQGAPLTSAGPCAQRPRGGGR Same 517312 chr17:2393803-2393928+ 67497 67497 520 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.801587301587 0.846640316206 -9.69672857143 0.7369 -7.9776547619 -1.71907380952 0.0953525507002 0.198455323212 16384 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -13.9335642857 0.4074 -11.4904095238 -2.4431547619 -0.0385352428102 0.337455884464 64131 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 ENST00000571232.1,ENST00000174618.4 AntiNC,AntiCDSintron not annotated putative regulatory region 68054 530330 chr19:15449893-15450039- NoOverlap chr19 15449893 15450039 - 1.89345916437 49 0.407792066243 2.01404696642 -0.120587802055 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15449892;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15449893-15450039-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15449893-15450039&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0235601706778 -0.0627162213931 0.380747205048 15560704 15560850 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15560703;147;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15449893-15450039-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15560704-15560850&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGGWGGGGAPDLPIMAARRGCRAEVTAARRGGGAAGGAI*RDNVPRAVEAAAAAEAAAPAPGAAAAVAAATAAPR Same 531793 chr19:15449893-15450039- 67226 67226 828 19 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.789115646259 1.11363636364 0.540791836735 0.5917 1.32913265306 -0.788340816327 -0.0239871663121 0.353536012583 56790 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -5.18690816327 0.2962 -0.996112244898 -4.19079591837 -0.0319634570341 0.31265832063 58894 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.131950748051 chr10:5525086-5525535+ ENST00000263381.11 UTR5 coding exon(s) WIZ 2 cassette exons 68067 504796 chr14:76134398-76134424- NoOverlap chr14 76134398 76134424 - 5.97311131159 9 0.846489153379 0.127777844667 5.84533346693 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;76134397;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76134398-76134424-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A76134398-76134424&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.07578865921 -0.0627764751758 0.823770836115 76600741 76600767 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;76600740;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A76134398-76134424-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A76600741-76600767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWQRPVVQWER Same 506642 chr14:76134398-76134424- 65568 65568 2499 0 1204 76131383 76139120 1818 1818;4345;22997;27107;30537;31486;38498;41376;68067 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:76131383-76139120&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.703703703704 0.385714285714 -1.98236666667 0.9938 -6.63914444444 4.65677777778 -0.0517823717348 0.613597571219 71399 4515 4515;9493;16210;27689;28296;48242;62795;67676;71399 -6.12505555556 0.7398 -10.6315333333 4.50647777778 -0.0466017580244 0.483160790926 69721 13549 13549;42486;43506;45749;54311;55020;58474;69721;73189 0.0 0.0 not annotated putative regulatory region 68136 466654 chr1:111990128-111990163+ NoOverlap chr1 111990128 111990163 + 4.9365499441 12 0.595918211643 1.37312494715 3.56342499695 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;111990127;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111990128-111990163%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A111990128-111990163&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0405541340129 -0.0633768594485 0.608638884602 112532750 112532785 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;112532749;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111990128-111990163%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A112532750-112532785&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLAAGGCPGRGRAR Same 468514 chr1:111990128-111990163+ 67767 67767 369 0 3139 111987704 111990382 4367 4367;39514;56303;64208;68005;68136;69319 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:111987704-111990382&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.833333333333 1.03349282297 7.33511666667 0.7815 6.77585833333 0.559258333333 0.0459622401193 0.269209766754 24066 9251 9251;20935;24066;40454;53078;72081;72576 -0.0776916666667 0.4412 0.165866666667 -0.243558333333 -0.0220758986865 0.326563217971 49854 11706 11706;24170;34786;49854;53572;64032;73297 0.0 0.0618315597714 chr3:47409928-47411686+ ENST00000442751.1 NC not annotated putative regulatory region 68160 546274 chr21:8217837-8218205+ NoOverlap chr21 8217837 8218205 + 0.914131685607 123 0.240592968072 0.790265040184 0.123866645422 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8217836;369;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217837-8218205%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8217837-8218205&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0683295858929 -0.0636300153006 0.457322597557 117312 117680 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;117311;369;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8217837-8218205%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A117312-117680&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NKWEAPGAPPVSPRGARGGVRRPCGPPVKYHYSDRFFTDPVRRGGEPRGALASGAKRPAARRPGATRSGDSARWGV*LGRYTCQTVTQVS*GELREDRNLPWSRRAKARLILIFSTNTDRESGASR Same 547687 chr21:8217837-8218205+ 69780 69780 -1620 47 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.685636856369 0.905549962245 0.571494308943 0.0806 0.447636585366 0.123857723577 0.0120309825462 0.474190750083 35924 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 0.452026829268 0.0577 0.491227642276 -0.0392008130081 0.00692813695556 0.530283560086 32080 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000618951.1,ENST00000623664.1 NC,NCintron not annotated SSU-rRNA_Hsa repeat sequence 68190 588636 chr9:23821761-23821787+ NoOverlap chr9 23821761 23821787 + 4.80127779974 9 0.343331383569 -0.276022195816 5.07729999555 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;23821760;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821761-23821787%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A23821761-23821787&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00855844052002 -0.0638883893366 0.758486731785 23821759 23821785 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;23821758;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A23821761-23821787%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A23821759-23821785&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAPRRAGNRPPHPAGYCLSDAQAPR Same 589582 chr9:23821761-23821787+ 65951 65951 2239 0 2960 23821259 23831562 4140 4140;10091;11491;13843;14342;24016;25531;27856;33955;34439;38433;38826;43568;55008;67686;68190 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:23821259-23831562&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.925925925926 1.44 7.94417777778 0.4158 -2.22378888889 10.1679666667 0.0400095166025 0.952930126443 25564 11864 11864;12452;13744;21118;23498;25564;28187;28238;30423;38733;43734;62734;64407;66213;68446;70256 6.89116666667 0.1908 -4.53401111111 11.4251777778 0.0317386842907 0.757425159875 23232 10817 10817;17477;22240;22739;23232;24489;29698;32893;39281;40577;42918;50472;56129;59821;65485;70229 0.0 0.0 ENST00000544538.5,ENST00000380117.5,ENST00000462649.1 AntiUTR5,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 68226 475822 chr1:213995025-213995105- NoOverlap chr1 213995025 213995105 - 2.55653708069 27 0.915790544493 1.08901486684 1.46752221386 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;213995024;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213995025-213995105-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A213995025-213995105&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.012404312471 -0.0641430672852 0.491791826903 214168368 214168448 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214168367;81;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A213995025-213995105-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214168368-214168448&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QHAECLERLPSLSVHL*KHLRAP*DCICG Same 477712 chr1:213995025-213995105- 66770 66770 1456 12 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.530864197531 0.532894736842 0.149196296296 0.9971 -2.93485925926 3.08405555556 0.108826969583 0.628014388162 14985 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -0.654285185185 0.71 -3.98792222222 3.33363703704 0.105550435272 0.572563850827 11006 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000261454.8 AntiUTR5intron not annotated potentially spurious 68281 573706 chr6:9819297-9819329- NoOverlap chr6 9819297 9819329 - 5.43847271529 11 0.905697857495 1.4226363789 4.0158363364 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;9819296;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9819297-9819329-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A9819297-9819329&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0283021277712 -0.0645593153764 0.647151631103 9819530 9819562 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;9819529;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A9819297-9819329-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A9819530-9819562&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVG*AVFPLCNNNFDTVEGK Same 574735 chr6:9819297-9819329- 66709 66709 1572 2 417 9819156 9819329 587 587;68281 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:9819156-9819329&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.454545454545 0.0 10.2356454545 0.9609 0.00406363636364 10.2315818182 0.456201229108 0.961717679068 3458 1333 1333;3458 19.5335545455 0.7421 0.169281818182 19.3642727273 0.79060391319 0.957332525662 2512 457 457;2512 0.0 0.0 ENST00000469426.5,ENST00000460363.6,ENST00000460066.5 NC,CDSintron,NCintron redundant PhyloCSF signals are accounted for elsewhere on the list 68388 522542 chr17:58324558-58324593- NoOverlap chr17 58324558 58324593 - 4.55564161258 12 0.637758449683 -0.693758269151 5.24939988173 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;58324557;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A58324558-58324593-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A58324558-58324593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0716076182318 -0.0655743568583 0.811856323393 56401919 56401954 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;56401918;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A58324558-58324593-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A56401919-56401954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VPPSIGLRPAGPGRPPLPR Same 523970 chr17:58324558-58324593- 68268 68268 120 0 927 58324435 58331258 1430 1430;23079;35188;45808;68388 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:58324435-58331258&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.805555555556 0.529411764706 -4.54698333333 0.8573 -8.81165 4.26466666667 -0.0191391333419 0.605188303685 53580 3022 3022;4098;31103;33297;53580 -7.71405833333 0.3706 -13.3169 5.60284166667 -0.0223799313783 0.544373528911 50126 4412 4412;7618;50126;62080;66751 0.0 0.153361358286 chr22:21546057-21550694- ENST00000268893.10 CDSintron not annotated putative regulatory region 68396 506371 chr15:40323842-40324024+ NoOverlap chr15 40323842 40324024 + 1.94281312697 61 0.505399067198 1.68980489158 0.253008235383 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;40323841;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323842-40324024%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A40323842-40324024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00809230712889 -0.0656339356041 0.454010133887 40616043 40616225 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;40616042;183;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A40323842-40324024%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A40616043-40616225&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGVAADGDAEPGGCGGCGGCGCGGGGEAADGPAAAAALAAVTGPGPGGGCSNAVAGCGRAA*GAAAERGAAGNRGRRAAPCPVLAGRQAPSSRGR Same 508082 chr15:40323842-40324024+ 66367 66367 2029 28 1677 40313687 40324514 2488 2488;29639;48301;50245;50817;59923;62142;66647;67529;68396 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:40313687-40324514&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.841530054645 0.907489740082 -0.700639344262 0.4966 -0.41976557377 -0.280873770492 -0.0220009989428 0.385409023095 55466 2234 2234;17663;29719;32124;51811;55466;56351;56933;64873;66727 -6.4195295082 0.5045 -8.40767540984 1.98814590164 0.0332124257877 0.577533475088 22796 2097 2097;14593;22796;39510;43273;44464;48619;53899;64626;73766 0.0 0.118531153038 chr1:206115951-206116890- not annotated putative regulatory region 68410 522310 chr17:50751359-50751427- NoOverlap chr17 50751359 50751427 - 2.61616522333 23 0.929922610222 -0.40015660939 3.01632183272 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;50751358;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A50751359-50751427-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A50751359-50751427&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0953463378116 -0.065724240784 0.666609249589 48828720 48828788 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;48828719;69;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A50751359-50751427-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A48828720-48828788&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DTQQLSVKITGNSIQTWMWVEKGVPGMSTCLV Same 523738 chr17:50751359-50751427- 67849 67849 561 0 11440 50750924 50761416 17729 17729;20331;30313;39578;68410 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:50750924-50761416&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.463768115942 0.0 0.0783173913043 0.9596 -0.362486956522 0.440804347826 0.00170912743606 0.364117953476 40644 2260 2260;17611;40644;48115;53652 -4.02106521739 0.9047 -1.88829130435 -2.13277391304 -0.0259372818581 0.3187358612 53407 607 607;33223;37013;53407;69870 0.0 0.0 ENST00000393227.6,ENST00000503798.1,ENST00000513969.5,ENST00000240304.5 AntiUTR3,AntiNC,AntiCDSintron,AntiUTR3intron protein-coding gene protein-coding gene ENSG00000167117; found after examing lncRNAs for coding potential 68426 536005 chr2:175441590-175441781+ NoOverlap chr2 175441590 175441781 + 1.62818907388 64 0.97164706836 1.21491241734 0.413276656531 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;175441589;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441590-175441781%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A175441590-175441781&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0813024419619 -0.0658530341122 0.47594373729 176306318 176306509 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;176306317;192;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441590-175441781%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A176306318-176306509&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QIEGSEIGYHDRWKLAPMFSFRPSQGTCPPYSAGLSSATFPLLMKAGDGIVK*CICVS*TSLMKA*GRRAVKQK Same 537368 chr2:175441590-175441781+ 63455 63455 4971 21 2593 175431262 175442589 3667 3667;23940;24312;30353;42328;47431;68426;71581;72593 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:175431262-175442589&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.515625 0.313469387755 -1.6327125 0.9998 -1.884221875 0.251509375 0.0374686239687 0.413775573948 26288 9400 9400;12533;13565;26288;43072;56059;57986;61202;69104 -1.3178234375 0.9077 -3.476178125 2.1583546875 0.201575970159 0.600829365351 6205 Best 6205 6205;6835;9148;28284;38003;50257;61246;63121;67251 0.0 0.0 ENST00000438963.1 NCintron not annotated potentially spurious 68461 571750 chr6:50093473-50093514+ NoOverlap chr6 50093473 50093514 + 4.72872860943 14 0.940481095162 3.38493565151 1.34379295792 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;50093472;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A50093473-50093514%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A50093473-50093514&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0117007574019 -0.0662105846865 0.344673943235 50061186 50061227 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;50061185;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A50093473-50093514%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A50061186-50061227&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VWENPYFCIVIRTQK Same 572777 chr6:50093473-50093514+ 67468 67468 993 0 15272 50093305 50093758 25810 25810;47856;68461 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:50093305-50093758&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.428571428571 0.518518518519 0.810985714286 0.9919 -0.636057142857 1.44704285714 0.00259675399611 0.385311755048 40188 11547 11547;40188;66555 -8.91635 0.7999 -5.0072 -3.90915 -0.0393057391045 0.20049954813 64706 18779 18779;64706;70015 0.0 0.0 not annotated putative regulatory region 68464 558849 chr4:41748984-41749016+ NoOverlap chr4 41748984 41749016 + 5.44791823084 11 0.871946288243 1.70074558258 3.74717264826 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41748983;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748984-41749016%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41748984-41749016&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0219679967543 -0.0662456527039 0.613099523566 41751001 41751033 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41751000;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748984-41749016%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41751001-41751033&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LEFNTTPLRTEPLILPSNQLPAL Same 559832 chr4:41748984-41749016+ 66500 66500 1964 0 2000 41745545 41752242 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.636363636364 0.825 5.1042 0.9978 3.06176363636 2.04243636364 0.10233389614 0.394235964485 15582 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 7.63684545455 0.8553 -3.50596363636 11.1428090909 0.288362117887 0.764171261468 4750 Best 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0 ENST00000508038.1 NCintron not annotated putative regulatory region 68512 582327 chr7:115728598-115728660- NoOverlap chr7 115728598 115728660 - 3.18872853688 21 0.892448600711 1.78144756101 1.40728097586 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;115728597;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115728598-115728660-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A115728598-115728660&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00151351007393 -0.066613675084 0.433476093359 115368652 115368714 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;115368651;63;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A115728598-115728660-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A115368652-115368714&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YSIQRVMTARPVNPPGSPVKCLWLLLAYGK Same 583288 chr7:115728598-115728660- 67151 67151 1361 0 1478 115728598 115732308 2200 2200;48660;68512 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:115728598-115732308&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.555555555556 0.21 1.54176190476 0.992 1.58298095238 -0.041219047619 0.0448844090042 0.312442414049 24332 15691 15691;22043;24332 1.65575714286 0.8818 0.291185714286 1.36457142857 0.074551960211 0.454722261788 14511 Best 14511 14511;35054;57894 0.0 0.0 not annotated putative regulatory region 68528 515945 chr17:2400683-2400835+ NoOverlap chr17 2400683 2400835 + 1.64439600589 51 0.858636232398 0.374984361377 1.26941164451 ENST00000174618.4,ENST00000575394.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2400682;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400683-2400835%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2400683-2400835&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0239448359242 -0.0667646963823 0.576933240716 2303977 2304129 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2303976;153;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400683-2400835%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2303977-2304129&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPFQEAGRLQ*RLYAHRAESCRGRAGAEAAAREPGTGQAGGQAGGRDHLRGATGLGGAAHSAGK Same 517321 chr17:2400683-2400835+ 66881 66881 1647 5 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.802915451895 -1.79022745098 0.9801 -4.6152745098 2.82504705882 0.0811410434812 0.657297836195 18130 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -7.33798431373 0.6127 -9.87517843137 2.53719411765 0.027383893463 0.589468270266 24564 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 ENST00000174618.4 AntiCDS not annotated putative regulatory region 68543 492176 chr12:57611390-57611425+ NoOverlap chr12 57611390 57611425 + 4.62304177135 12 0.548532590728 2.11675836643 2.50628340493 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;57611389;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57611390-57611425%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A57611390-57611425&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0431490978235 -0.0669233678865 0.475157720873 58005173 58005208 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;58005172;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A57611390-57611425%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A58005173-58005208&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SWAAEAPPRGGPAARPVIQLSAPLGPAQR Same 494157 chr12:57611390-57611425+ 67954 67954 589 0 115 57604808 57624781 137 137;276;887;2361;32008;57382;64750;68543 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:57604808-57624781&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.888888888889 0.857142857143 4.36214166667 0.7685 -0.821275 5.18341666667 0.0544011766651 0.680837633412 22257 192 192;198;227;1040;9332;22257;31301;59213 -9.62626666667 0.429 -9.1994 -0.426866666667 -0.0250387775909 0.304338530565 52552 667 667;1211;1268;2339;27890;29446;30873;52552 0.0 0.0617695214355 chr10:118754396-118754762- ENST00000333972.11 CDSintron coding exon(s) SLC26A10 alternative final exon 68564 584056 chr8:39557408-39557440+ NoOverlap chr8 39557408 39557440 + 5.55770911954 11 0.741893644617 3.84206357734 1.7156455422 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;39557407;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A39557408-39557440%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A39557408-39557440&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0205860566334 -0.0671272815747 0.347968171813 39414927 39414959 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;39414926;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A39557408-39557440%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A39414927-39414959&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SADYELCNKTAYCLR Same 584986 chr8:39557408-39557440+ 67412 67412 1152 0 3376 39557357 39558448 4684 4684;11054;68564 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:39557357-39558448&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.363636363636 0.0 5.43702727273 0.7649 1.37191818182 4.06510909091 0.0408013261467 0.570253876726 25343 3923 3923;5907;25343 10.8733909091 0.3493 3.15895454545 7.71443636364 0.139858115305 0.619075895166 8540 3640 3640;5072;8540 0.0671751636331 chr8:39667998-39668196+ 0.32140051756 chr8:39766848-39767043- ENST00000518465.1 NCintron pseudogene extension ADAM family pseudogene extended ENSG00000254067 68618 512433 chr16:75434165-75434221+ NoOverlap chr16 75434165 75434221 + 1.98643676662 19 0.505406913943 -1.66481061986 3.65124738648 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;75434164;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A75434165-75434221%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A75434165-75434221&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0108707255334 -0.0676013097913 0.716766562035 75468063 75468119 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;75468062;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A75434165-75434221%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A75468063-75468119&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SVREAAPDSAEVTSIVRDEAMTK Same 514077 chr16:75434165-75434221+ 67449 67449 1169 0 10710 75434051 75434393 16322 16322;19512;68618 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:75434051-75434393&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.59649122807 1.0 2.40062105263 0.7113 -7.29887894737 9.6995 0.218649587107 1.02188190434 8027 6381 6381;8027;17844 2.40062105263 0.2223 -7.29887894737 9.6995 0.111152562013 0.786943519286 10537 8776 8776;10537;17082 0.0 0.0 ENST00000621929.1,ENST00000566594.1,ENST00000561887.1 NC,AntiCDSintron,AntiNCintron not annotated potentially spurious 68674 518101 chr17:48615568-48615615+ NoOverlap chr17 48615568 48615615 + 3.45860001445 16 0.636194399939 -0.129706200212 3.58830621466 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48615567;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48615568-48615615%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48615568-48615615&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0657864243666 -0.0681648654459 0.670821767986 46692930 46692977 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46692929;48;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48615568-48615615%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46692930-46692977&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RGNWSLSKCQGRFGKM Same 519502 chr17:48615568-48615615+ 68685 68685 -11 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.458333333333 1.28571428571 -1.365175 0.9638 -0.52968125 -0.83549375 -0.0423673797362 0.221480366976 67907 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -5.13235 0.771 -9.12514375 3.99279375 -0.00922214010623 0.520556077145 40448 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000567101.2 AntiNCintron not annotated putative regulatory region 68748 518113 chr17:48626282-48626326+ NoOverlap chr17 48626282 48626326 + 3.7546667556 15 0.723225757229 -0.19580681324 3.95047356884 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48626281;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626282-48626326%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48626282-48626326&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0749665768049 -0.068775482778 0.702737900874 46703644 46703688 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46703643;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626282-48626326%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46703644-46703688&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NGHSQTLSGRLQGEGKRSRGGAQAGR Same 519514 chr17:48626282-48626326+ 68406 68406 342 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.8 1.16883116883 -4.20361333333 0.9254 -6.8296 2.62598666667 -0.0424000533219 0.492223275689 67917 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -12.9426 0.5642 -19.01466 6.07206 -0.0333917237368 0.544115383708 60108 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000311177.6,ENST00000567101.2 AntiUTR5,AntiNCintron not annotated putative regulatory region 68761 539158 chr2:71578904-71578957- NoOverlap chr2 71578904 71578957 - 3.32392771873 18 0.936664886447 -0.237961072061 3.56188879079 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;71578903;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A71578904-71578957-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A71578904-71578957&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0867356358402 -0.0688726991357 0.687511813429 71806034 71806087 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;71806033;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A71578904-71578957-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A71806034-71806087&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YENKIMLGMETADD*QTEPGPPAPWK Same 540536 chr2:71578904-71578957- 68546 68546 215 3 1338 71578835 71579031 2011 2011;57752;68761 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:71578835-71579031&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.444444444444 1.6875 0.221283333333 0.9512 0.0514 0.169883333333 -0.0153574885963 0.3094111986 50833 21858 21858;50833;72581 -3.02366666667 0.4218 -5.28520555556 2.26153888889 -0.00683211828933 0.468222383598 39057 Best 39057 39057;55413;67008 0.0 0.0 ENST00000258104.7,ENST00000475076.5 AntiCDSintron,AntiNCintron not annotated putative regulatory region 68808 472685 chr1:62998995-62999081- NoOverlap chr1 62998995 62999081 - 2.43518624635 29 0.911586596265 1.2900552318 1.14513101454 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;62998994;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62998995-62999081-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A62998995-62999081&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00479237923692 -0.0693008243696 0.462400642188 63464666 63464752 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;63464665;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A62998995-62999081-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A63464666-63464752&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VLVKLALLCSSPVLTFHRSDAIAPACFRSPWQGDC Same 474564 chr1:62998995-62999081- 67294 67294 1514 0 668 62997933 63000329 1026 1026;13743;18049;27623;33268;34189;37177;59194;68808 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:62997933-63000329&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.528735632184 0.172619047619 0.145217241379 0.9858 0.267424137931 -0.122206896552 0.0195960669526 0.348358295191 32781 6220 6220;8200;13946;16945;28973;32781;63612;68420;69109 -5.71363103448 0.8676 -8.44213448276 2.72850344828 0.0157421122832 0.542547277661 28460 6223 6223;11538;12991;22844;28460;29330;40736;45828;71146 0.0 0.0 not annotated putative regulatory region 68850 518079 chr17:48604920-48604988+ NoOverlap chr17 48604920 48604988 + 2.50538256894 23 0.861592710168 -0.427452128866 2.93283469781 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48604919;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48604920-48604988%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48604920-48604988&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.100367526613 -0.0696467185113 0.656601486076 46682282 46682350 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46682281;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48604920-48604988%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46682282-46682350&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YQEAGALKDDSAPT*VWCPKECCIITTR Same 519480 chr17:48604920-48604988+ 67750 67750 1100 8 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.550724637681 0.392045454545 -0.544130434783 0.9878 -1.37985652174 0.835726086957 -0.00083553755349 0.396456735935 41922 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -14.8280521739 0.8147 -11.6015652174 -3.22648695652 -0.041978019953 0.240238006078 66657 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000466037.6,ENST00000484302.3 NCintron,AntiUTR5 not annotated putative regulatory region 68912 560437 chr4:157361351-157361404+ NoOverlap chr4 157361351 157361404 + 3.69284435941 18 0.978834041182 1.3522777309 2.34056662851 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;157361350;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157361351-157361404%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A157361351-157361404&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0306654092976 -0.0702101089501 0.526100136701 158282503 158282556 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;158282502;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157361351-157361404%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A158282503-158282556&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLHLLVTSSDTLMLIWLCK Same 561421 chr4:157361351-157361404+ 69132 69132 -220 0 430 157360983 157365960 611 611;15695;15785;16090;17171;20574;21787;68912;71132 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:157360983-157365960&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.481481481481 0.327272727273 3.39802222222 0.9998 1.34085 2.05717222222 0.15000982125 0.471255614892 11582 3893 3893;6182;6226;10710;11582;13344;21003;56071;56585 2.30163888889 0.9351 -0.0997722222222 2.40141111111 0.0834384800379 0.477622032708 13336 3522 3522;3805;7560;13336;15714;28221;29180;32592;39824 0.0 0.0 ENST00000264426.13,ENST00000323661.10 CDSintron,NCintron coding exon(s) GRIA2 alternative final exon 68935 512295 chr16:72427573-72427605+ NoOverlap chr16 72427573 72427605 + 5.59060923925 11 0.859403372244 3.38832720843 2.20228203081 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72427572;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427573-72427605%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72427573-72427605&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00316007528828 -0.0704603765658 0.40980974637 72461472 72461504 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72461471;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72427573-72427605%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72461472-72461504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MWIGACPFCMEYTSSMGFTAQLR Same 513939 chr16:72427573-72427605+ 67176 67176 1759 0 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.515151515152 1.0 -0.669045454545 1.0 -2.23684545455 1.5678 -0.0365332557378 0.373626977418 64613 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -12.8702 0.6119 -12.5834090909 -0.286790909091 -0.0245614094935 0.287504055492 52119 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000564508.2,ENST00000561611.2 NC,AntiNCintron not annotated potentially spurious 68965 501051 chr14:29380951-29381079+ NoOverlap chr14 29380951 29381079 + 1.88678606153 43 0.944114364595 0.953483690356 0.933302371178 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;29380950;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A29380951-29381079%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A29380951-29381079&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.00436683617947 -0.0708876956722 0.506194181996 29850157 29850285 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29850156;129;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A29380951-29381079%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29850157-29850285&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IARLVLYRRSWLSKDPDAKLRRIFLSQ*QIACWWAVQSVILAASELSTCLSLG Same 502943 chr14:29380951-29381079+ 66685 66685 2280 17 14267 29380951 29390501 23607 23607;27512;35606;68965;71384 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:29380951-29390501&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.542635658915 0.658163265306 -4.58152325581 0.9806 -2.53631860465 -2.04520465116 -0.117929046445 0.18068363238 73776 16283 16283;37208;54952;57031;73776 -11.9761139535 0.5435 -9.79379069767 -2.18232325581 -0.0609912052476 0.358427353675 73483 24002 24002;41979;56295;66595;73483 0.0 0.0 ENST00000548306.1 AntiNCintron not annotated potentially spurious 69075 463507 chr1:15731898-15731942+ NoOverlap chr1 15731898 15731942 + 4.05305343072 15 0.754572874545 1.66337324778 2.38968018293 ENST00000375793.2,ENST00000375799.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;15731897;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A15731898-15731942%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A15731898-15731942&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0354611922867 -0.071921875338 0.49925610073 16058393 16058437 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;16058392;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A15731898-15731942%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A16058393-16058437&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AALASSLPFHPPPLAQGGAVRWLPESQHHGSAPR Same 465373 chr1:15731898-15731942+ 68359 68359 716 0 166 15721341 15731942 198 198;10804;69075 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:15721341-15731942&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.827205882353 -3.91894666667 0.974 -8.25856 4.33961333333 -0.0391219367906 0.631761443535 66058 162 162;21947;66058 -21.74142 0.9238 -30.0393866667 8.29796666667 -0.0272826192428 0.49079149118 54613 854 854;47280;54613 0.0 0.116834032698 chr1:16250670-16251785- ENST00000375793.2,ENST00000477849.1,ENST00000453804.1 CDS,NCintron,AntiNCintron under investigation PLEKHM2 has a PhyloCSF signal that changes frame within coding exon 9. The signal in that frame ends after approximately 130bp, prior to a STOP codon, and resumes in the original frame later in the same exon. The event is supported by PhyloCSF in the chicken genome [ICGSC Gallus_gallus-4.0/galGal4 ~chr21:4,217,442-4,217,718). Under investigation as a potential programmed frameshift. 69080 478901 chr10:113120070-113120102+ NoOverlap chr10 113120070 113120102 + 5.52122738145 11 0.854655042066 2.71219106154 2.80903631991 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113120069;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113120070-113120102%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113120070-113120102&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0117284369623 -0.0719890286432 0.490137148665 114879829 114879861 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114879828;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113120070-113120102%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114879829-114879861&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLPRAENFID**DQR Same 480802 chr10:113120070-113120102+ 67261 67261 1819 3 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.515151515152 0.942857142857 -0.123145454545 0.9974 -0.377281818182 0.254136363636 -0.0341985689024 0.267546016329 63183 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -0.8998 0.9094 -1.26512727273 0.365327272727 -0.0197914238511 0.342658579458 47908 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 69158 564624 chr5:81851608-81851658+ NoOverlap chr5 81851608 81851658 + 3.79285881099 17 0.887403677424 2.1252823437 1.66757646729 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;81851607;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A81851608-81851658%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A81851608-81851658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.00959128475836 -0.0730303748721 0.426634016085 81147427 81147477 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;81147426;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A81851608-81851658%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A81147427-81147477&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AQPSDEVGGRNINFNSCFLTPAVSLPK Same 565612 chr5:81851608-81851658+ 67852 67852 1306 0 10939 81851608 81852135 16747 16747;21219;69158 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:81851608-81852135&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.43137254902 0.421487603306 0.907005882353 0.9902 1.37632941176 -0.469323529412 -0.000648683869964 0.251388796165 41828 14281 14281;41058;41828 -4.00847647059 0.6473 -1.46768235294 -2.54079411765 -0.0383566888531 0.271597691037 64012 9556 9556;42118;64012 0.0 0.0 ENST00000512859.1 NC not annotated potentially spurious 69194 512290 chr16:72426157-72426189+ NoOverlap chr16 72426157 72426189 + 5.26382725686 11 0.824823654258 1.15449096195 4.10933629491 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72426156;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72426157-72426189%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72426157-72426189&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0440456815213 -0.0734160374587 0.661234117148 72460056 72460088 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72460055;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72426157-72426189%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72460056-72460088&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDSAAVEPAQRMFSHPAR Same 513934 chr16:72426157-72426189+ 67438 67438 1756 0 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.636363636364 0.611111111111 2.17867272727 1.0 -0.474563636364 2.65323636364 0.0232521136753 0.458116700384 31291 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -0.337354545455 0.6399 -2.00647272727 1.66911818182 -0.0111952782402 0.393925413665 41659 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000564508.2,ENST00000561611.2,ENST00000624829.3 NC,AntiNC,AntiNCintron not annotated potentially spurious 69204 547211 chr21:8398636-8399025- NoOverlap chr21 8398636 8399025 - 0.55112462273 130 0.183678011163 0.736000781678 -0.184876158948 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8398635;390;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398636-8399025-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8398636-8399025&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0556571765797 -0.073536351276 0.44201935971 159039 159428 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159038;390;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8398636-8399025-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159039-159428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APPPPLPSTLDCRRRPGMGPTLQRHPFSGLVDSAGELLHTP*RIPTSMATVLLSISTNTFSGV**ASASGALTRRSVHPAAPVLLTKSGPLGTRIPRPAPRQRAGLLTHLKFENRLRSFRPQDL*SFALPDKTAWR Same 548613 chr21:8398636-8399025- 71284 71284 -2080 70 1664 8391812 8402305 2472 2472;3575;6099;21977;23081;24974;33792;37328;38600;38720;39068;39105;40064;41612;41831;41891;42396;42798;42841;43266;43411;44132;44198;44361;44426;44446;45513;45693;46442;46687;46779;46968;47262;47455;47522;47609;47654;47997;48028;48277;48413;48610;49514;49643;49658;50357;51664;51765;52990;53373;54705;54709;54991;56444;58626;60836;60848;63429;65557;66563;69204 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8391812-8402305&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.576923076923 1.07073643411 -1.23674153846 0.2679 -1.32664923077 0.0899076923077 -0.0116241484374 0.487561969491 48210 6004 6004;6197;16193;16644;17908;18657;21360;22743;23799;24051;26348;26477;28374;28391;28535;28571;28694;29403;29877;30310;30848;30955;31336;31428;31522;31637;32139;32238;32832;32932;33259;35181;36445;36921;37857;38670;39159;39191;39527;39939;40032;41587;42857;42981;43011;43893;45641;45913;46768;48210;50906;51887;53246;55265;55436;55806;56608;58603;62904;69229;72189 -3.88652769231 0.2152 -4.20087 0.314342307692 -0.0154160540886 0.537310780838 44631 2998 2998;3247;4160;4227;5577;5695;6405;6978;7332;8292;8918;9040;9860;12047;12923;13346;15978;16104;16372;16893;17580;17715;18101;18482;21199;22250;22411;23310;24436;24954;25517;25642;28375;28652;30271;31932;32427;32498;33866;34868;39030;39131;41185;44631;46159;47105;48373;48480;49887;49914;49917;50701;54161;55408;56467;61389;62775;63433;64391;65020;73502 0.0 0.0846919989232 chr11:1240851-1251743+ ENST00000623860.2 AntiNCintron not annotated SSU-rRNA_Hsa 69205 547307 chr21:8442865-8443254- NoOverlap chr21 8442865 8443254 - 0.55112462273 130 0.183678011163 0.736000781678 -0.184876158948 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8442864;390;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442865-8443254-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8442865-8443254&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0556571765797 -0.073536351276 0.44201935971 159039 159428 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;159038;390;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8442865-8443254-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A159039-159428&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APPPPLPSTLDCRRRPGMGPTLQRHPFSGLVDSAGELLHTP*RIPTSMATVLLSISTNTFSGV**ASASGALTRRSVHPAAPVLLTKSGPLGTRIPRPAPRQRAGLLTHLKFENRLRSFRPQDL*SFALPDKTAWR Same 548710 chr21:8442865-8443254- 71285 71285 -2080 70 1651 8433673 8446534 2451 2451;2486;2918;21978;23082;24975;33793;34516;37329;38601;39323;39686;40065;41436;41510;41832;41892;42314;42799;42830;42842;43209;43246;43380;43412;43573;43662;44102;44133;44199;44341;44447;44984;44994;45506;45514;45694;45828;45847;46047;46206;46375;46443;46688;46795;46969;47106;47118;47228;47261;47361;47370;47456;47610;47655;47998;48114;48146;48278;48414;49515;49570;49644;49659;50123;51355;51665;52910;52991;53219;53503;54615;54710;54791;56445;56528;57313;57322;57464;58239;58627;59775;60837;63430;65558;66564;69205 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8433673-8446534&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.576923076923 1.07073643411 -1.17489153846 0.2711 -1.25023923077 0.0753476923077 -0.0104935814832 0.486984624716 47442 5980 5980;5995;10471;15963;17007;18699;18959;18994;21124;21795;22442;22648;23509;23640;24067;25175;26112;26719;26726;27861;28211;28232;29323;29554;30132;30826;31029;31034;31545;31600;31631;31701;31966;32172;32240;32515;32982;32986;33398;33672;34625;34967;35066;35280;35323;35468;36190;36438;37154;37162;37267;37326;37437;37632;38238;38618;39252;39275;39549;39860;40334;40884;41122;41173;41193;44641;47442;47733;50698;50752;50809;51044;53018;55464;55592;55611;58517;59190;61533;61740;62980;63251;65249;69392;71455;71805;72857 -2.76678076923 0.2308 -2.81788384615 0.0511030769231 -0.000765271921794 0.531029063848 35754 3199 3199;3205;3859;4379;4426;4464;4621;5579;5746;6110;6123;6136;6357;6725;7275;7513;7768;7924;8425;8795;8848;9468;9580;9765;10015;10162;10981;12362;12783;13799;14317;14369;15153;16344;16705;18444;18582;19367;21712;23971;24067;24905;25158;25391;25938;26530;27061;27279;27888;28031;28866;30073;31605;32235;33436;35229;35374;35754;36263;36590;37848;37916;39487;40982;41521;41785;41851;42401;46660;47273;47777;48271;50087;50120;57148;57860;58426;59666;59848;61085;62757;65005;67532;70260;70499;70526;71028 0.0 0.0 not annotated SSU-rRNA_Hsa 69274 479932 chr10:8054446-8054505- NoOverlap chr10 8054446 8054505 - 2.92141505294 20 0.695100328069 1.00780518353 1.91360986941 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8054445;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8054446-8054505-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8054446-8054505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0668834786048 -0.0744285342179 0.494793151407 8096409 8096468 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8096408;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8054446-8054505-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8096409-8096468&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GTGSPAQGNCNPNPLQDFSPRPAHPRPSSRPSTDRKGAPQRAAAGGGAAGRVGEAR Same 481840 chr10:8054446-8054505- 69463 69463 -189 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.85 0.964285714286 -0.292125 0.7495 -3.473215 3.18109 -0.000766469822821 0.584766475076 41886 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -3.1439 0.3406 -6.21227 3.06837 -0.00485596882039 0.51510838379 37931 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 ENST00000481743.1 AntiNCintron not annotated putative regulatory region 69319 466651 chr1:111989394-111989429+ NoOverlap chr1 111989394 111989429 + 4.96335823089 12 0.68676915643 2.16135838628 2.80199984461 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;111989393;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111989394-111989429%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A111989394-111989429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0430914598745 -0.0748878698702 0.50921463739 112532016 112532051 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;112532015;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A111989394-111989429%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A112532016-112532051&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGCLLPHGTGPTPNPSGAPAPTHPGAGVGGCRVGSR Same 468511 chr1:111989394-111989429+ 68733 68733 586 0 3139 111987704 111990382 4367 4367;39514;56303;64208;68005;68136;69319 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:111987704-111990382&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.833333333333 0.9 1.1294 0.8125 -0.463016666667 1.59241666667 -0.0184502917444 0.379599277928 53078 9251 9251;20935;24066;40454;53078;72081;72576 -10.0340666667 0.5283 -13.1087833333 3.07471666667 -0.0383928796935 0.432054622294 64032 11706 11706;24170;34786;49854;53572;64032;73297 0.0 0.0590142704008 chr3:47409928-47411686+ not annotated putative regulatory region 69380 479920 chr10:8040824-8041024- NoOverlap chr10 8040824 8041024 - 1.46398362117 67 0.881205781575 0.644267174735 0.819716446435 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8040823;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8040824-8041024-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8040824-8041024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0314001633276 -0.0755008655378 0.532137474547 8082787 8082987 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8082786;201;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8040824-8041024-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8082787-8082987&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LNLTVDIITWK*FFIRRLPAHQCFMAFSCL*LYFKILDEVENYKRLFPYLCCSHIQDQRS*LRKKSEATLDS Same 481828 chr10:8040824-8041024- 66047 66047 3333 37 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.402985074627 0.749068322981 -1.44381791045 0.9969 -2.42085074627 0.977032835821 0.0865011278859 0.483822469583 17445 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -6.95384477612 0.8204 -5.92381343284 -1.03003134328 0.0147351872513 0.44850559618 28837 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.0 not annotated putative regulatory region 69423 473179 chr1:90835000-90835107- NoOverlap chr1 90835000 90835107 - 2.17342222854 36 0.89678288955 1.56730553839 0.606116690156 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90834999;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835000-90835107-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90835000-90835107&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0261293994241 -0.0758211429372 0.430411390842 91300557 91300664 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91300556;108;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835000-90835107-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91300557-91300664&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NNGWIMTSLRFQAD*MITNCVCRTSFSFSISSWSEQPA Same 475058 chr1:90835000-90835107- 68060 68060 1363 13 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.490740740741 0.769230769231 -1.34710277778 1.0 -0.424111111111 -0.922991666667 -0.0361414869669 0.294411986629 64378 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -8.289475 0.9107 -8.25851666667 -0.0309583333333 -0.0277586791451 0.442169561135 55053 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 69498 472837 chr1:70039737-70039778- NoOverlap chr1 70039737 70039778 - 3.99635702797 14 1.0 -0.955492888178 4.95184991615 ENST00000035383.9,ENST00000310961.9,ENST00000415775.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;70039736;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A70039737-70039778-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A70039737-70039778&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.144183345553 -0.0768628612481 0.805222071843 70505420 70505461 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;70505419;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A70039737-70039778-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A70505420-70505461&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PSSFYMSKQLLSPVCR Same 474716 chr1:70039737-70039778- 71158 71158 -1660 0 3 70039113 70043935 3 3;16752;69498 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:70039113-70043935&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.47619047619 0.0 3.61082142857 1.0 -3.02877857143 6.6396 0.21705326673 0.816220287758 8099 4066 4066;8099;16037 -4.56366428571 0.9277 -20.2269571429 15.6632928571 0.0962725860057 0.939441614135 11883 Best 11883 11883;14040;66705 0.0 0.0 ENST00000035383.9 AntiCDS not annotated potentially spurious 69571 484364 chr11:47326319-47326354+ NoOverlap chr11 47326319 47326354 + 5.03773337603 12 0.882537321024 2.00615815322 3.03157522281 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;47326318;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A47326319-47326354%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A47326319-47326354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0250452728096 -0.0776237203727 0.538293805126 47347870 47347905 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;47347869;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A47326319-47326354%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A47347870-47347905&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GELCARASPLRR Same 486306 chr11:47326319-47326354+ 68068 68068 1503 0 491 47323975 47326737 725 725;7074;33773;69571;73021 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:47323975-47326737&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.734693877551 -5.29069166667 0.9868 -3.01938333333 -2.27130833333 -0.00842513967075 0.14092171942 46166 8028 8028;16774;35166;46166;60522 -23.4776416667 0.8053 -18.6375916667 -4.84005 0.044849604384 0.100862403097 19804 1626 1626;8192;19804;26924;68134 0.0 0.0 ENST00000311027.9,ENST00000460452.5 CDSintron,NCintron pseudogene Mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) unprocessed pseudogene (ENSG00000283338) 69614 546234 chr21:8210319-8210429+ NoOverlap chr21 8210319 8210429 + 1.74772160601 37 0.548457086063 1.08883511778 0.658886488225 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8210318;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8210319-8210429%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8210319-8210429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0786444266423 -0.0781076955027 0.443353780514 109766 109876 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;109765;111;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8210319-8210429%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A109766-109876&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVVGSWERAGGPPRGEPPPVPAPCLSAPPRCS*LSVPRGPKR Same 547648 chr21:8210319-8210429+ 69837 69837 -223 9 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.774774774775 1.02554347826 -3.89566216216 0.2403 -4.40521351351 0.509551351351 -0.0172530883788 0.392462529572 52214 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -3.96146756757 0.1649 -4.24038648649 0.278918918919 -0.0557081308104 0.474630429555 72934 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1,ENST00000631211.1 NCintron,AntiNC not annotated SSU-rRNA_Hsa repeat sequence 69620 479925 chr10:8050667-8050777- NoOverlap chr10 8050667 8050777 - 1.68602976606 37 0.622426638128 0.266024251242 1.42000551482 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;8050666;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8050667-8050777-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A8050667-8050777&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.111843397022 -0.0782078865268 0.547351285256 8092630 8092740 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;8092629;111;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A8050667-8050777-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A8092630-8092740&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TLQAERARNRRISSEAANICRQKKEAEPSRAAESLPPEPR Same 481833 chr10:8050667-8050777- 70344 70344 -724 0 1909 8027079 8060257 2791 2791;5971;7954;14122;14586;15372;15583;18250;20324;24524;33532;35112;39813;43354;59870;63391;69274;69380;69620 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:8027079-8060257&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.657657657658 1.16666666667 0.494091891892 0.9088 -1.47142432432 1.96551621622 0.0888229308209 0.580522382003 17179 6610 6610;7703;10954;11381;12266;13251;15176;17179;17445;19787;20474;24286;25435;30265;41886;53961;54443;56524;73773 -5.28074594595 0.4121 -8.45626216216 3.17551621622 0.0175395027365 0.595169032851 27829 7819 7819;11067;12621;13529;13612;18833;23775;24238;25366;27829;28486;28837;37931;47015;51559;54662;55183;55485;73571 0.0 0.105224869139 chr19:42271784-42274577+ ENST00000355358.1 NC not annotated putative regulatory region 69638 475834 chr1:214017262-214017288- NoOverlap chr1 214017262 214017288 - 6.31425555547 9 0.857089087256 2.12816663252 4.18608892295 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;214017261;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214017262-214017288-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A214017262-214017288&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0400368879919 -0.0783767144682 0.62903856948 214190605 214190631 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;214190604;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A214017262-214017288-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A214190605-214190631&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NSTESPLNFMKQEEKK Same 477724 chr1:214017262-214017288- 67645 67645 1993 0 1497 213987582 214031537 2229 2229;11412;12261;13570;15526;20015;24476;25900;32480;33901;34981;51136;58781;60600;63301;68226;69638 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:213987582-214031537&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.37037037037 0.0 0.518833333333 0.9997 -0.9701 1.48893333333 -0.0371397256901 0.34625137145 64926 3179 3179;3996;4743;8865;10889;12287;14985;15460;17352;18582;20329;32282;34505;42175;58552;64926;65575 -3.69952222222 0.8429 -5.46522222222 1.7657 -0.043269157244 0.380176580998 67595 4922 4922;9845;11006;11547;11909;15504;16140;18788;21466;21642;26154;44139;46837;62374;63479;63933;67595 0.0 0.0 ENST00000261454.8 AntiCDSintron not annotated potentially spurious 69687 467303 chr1:153922680-153922706+ NoOverlap chr1 153922680 153922706 + 5.76581096649 9 0.530205233845 2.89908882644 2.86672214005 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;153922679;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922680-153922706%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A153922680-153922706&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0618094382952 -0.0789335227321 0.468450775184 153895156 153895182 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;153895155;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A153922680-153922706%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A153895156-153895182&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALPLPPPLHLSLPPPPPPLPPPSLLPFLAPHRPRAGGRPGWPRPK Same 469170 chr1:153922680-153922706+ 69280 69280 407 0 442 153922296 153923335 631 631;25620;45644;48477;49099;61066;66023;69687 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:153922296-153923335&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.925925925926 0.865384615385 -1.36236666667 0.4968 -4.30233333333 2.93996666667 -0.0121248821164 0.472147738531 48574 8425 8425;19724;29638;38385;45793;48574;52177;55960 -3.72692222222 0.2491 -3.88338888889 0.156466666667 -0.0147417120149 0.3186925951 44124 6002 6002;12984;19687;42340;44124;45459;47982;71255 0.0 0.192088559336 chr1:161042555-161042670- ENST00000368655.4 AntiUTR5intron not annotated putative regulatory region 69748 573886 chr6:15246020-15246046- NoOverlap chr6 15246020 15246046 - 6.4773557451 9 0.833293490332 3.76495544116 2.71240030395 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;15246019;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15246020-15246046-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A15246020-15246046&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.024945884537 -0.0796353352502 0.436009846937 15246251 15246277 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;15246250;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A15246020-15246046-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A15246251-15246277&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AEESTPAAAAAAAAAPQRGLAESLFSKPPNQ Same 574915 chr6:15246020-15246046- 67986 67986 1762 0 1766 15244943 15246114 2604 2604;15135;20464;24558;26329;27078;34912;61691;69748 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:15244943-15246114&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.740740740741 0.81 -0.1733 0.8989 -0.143888888889 -0.0294111111111 -0.0354568575451 0.232259628719 63982 9551 9551;16260;24695;37413;40709;45352;56150;59595;63982 -7.37613333333 0.5027 -8.45834444444 1.08221111111 -0.0382153086902 0.346835211063 63901 10022 10022;12289;27835;30484;54557;56016;61735;63783;63901 0.0 0.0 not annotated putative regulatory region 69754 535535 chr2:159396941-159397027+ NoOverlap chr2 159396941 159397027 + 2.23087241321 29 0.853355011668 0.73770354534 1.49316886787 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;159396940;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159396941-159397027%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A159396941-159397027&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0512293284262 -0.0797541678408 0.510481959261 160253452 160253538 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;160253451;87;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A159396941-159397027%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A160253452-160253538&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QADVCNALCCKAMQQYVI*QQPVLHFMHCYDNHITTK Same 536896 chr2:159396941-159397027+ 68884 68884 870 12 10752 159396069 159397027 16402 16402;27175;69754 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:159396069-159397027&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.436781609195 0.0 -0.756903448276 0.9995 -1.36794482759 0.61104137931 0.00742635209874 0.407812667673 37922 31372 31372;37922;55784 -10.8166965517 0.9848 -10.5890103448 -0.227686206897 -0.0421057779184 0.395220828487 66741 38148 38148;42310;66741 0.0 0.0 ENST00000420020.5,ENST00000294905.4,ENST00000551504.5 NCintron,AntiCDSintron,AntiNCintron not annotated potentially spurious 69819 514868 chr16:72428000-72428038- NoOverlap chr16 72428000 72428038 - 4.61110777121 13 0.945433737697 0.921884673146 3.68922309807 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72427999;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72428000-72428038-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72428000-72428038&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0583626674488 -0.0805717467887 0.640108270205 72461899 72461937 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72461898;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72428000-72428038-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72461899-72461937&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YANEICIKPFYCMMIKHWRH*QR Same 516518 chr16:72428000-72428038- 69512 69512 307 2 5346 72425674 72429311 7419 7419;20359;21636;23849;24685;27931;29808;67419;67757;69819;71722 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425674-72429311&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.384615384615 0.722222222222 -1.04040769231 1.0 -1.8952 0.854792307692 -0.0351590120071 0.331783415978 63782 9185 9185;30001;30975;34321;44342;61179;63064;63782;69032;69981;73105 -5.61286923077 0.927 -7.25084615385 1.63797692308 -0.0376454588607 0.40197616135 63425 15117 15117;16880;44158;45925;52647;58331;62919;63425;64625;67483;67573 0.0 0.0 ENST00000561611.2,ENST00000564508.2 NCintron,AntiNC not annotated potentially spurious 69881 524457 chr18:47595035-47595070+ NoOverlap chr18 47595035 47595070 + 4.50954168911 12 0.586569517561 2.04367511471 2.4658665744 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;47595034;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47595035-47595070%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A47595035-47595070&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0597400775325 -0.0812702725186 0.471465253931 45121406 45121441 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;45121405;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47595035-47595070%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A45121406-45121441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAAAIVTAADKPAQPR Same 525893 chr18:47595035-47595070+ 69395 69395 486 0 9000 47594360 47602035 13245 13245;26978;27676;41264;47167;69881;72567 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:47594360-47602035&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.527777777778 0.0 4.31016666667 0.8773 2.00160833333 2.30855833333 0.0312662600141 0.431599018914 28210 6593 6593;11265;14639;28210;30783;58565;63900 1.51241666667 0.4042 -3.631225 5.14364166667 0.0249439399424 0.544724886216 25346 7430 7430;14557;25346;33451;40777;53603;69649 0.0 0.0 not annotated potentially spurious 69925 481964 chr10:102419090-102419176- NoOverlap chr10 102419090 102419176 - 2.392582768 29 0.821094282339 1.75144815034 0.641134617657 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102419089;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102419090-102419176-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102419090-102419176&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0101059476743 -0.0816770619986 0.395398572019 104178847 104178933 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104178846;87;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102419090-102419176-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104178847-104178933&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRVLVGAGARVACNRSCGSLLGTRVGSGAGHACAAGPYVWLK Same 483881 chr10:102419090-102419176- 69586 69586 339 0 470 102395633 102432561 680 680;6932;11855;22696;25308;48284;57642;69925;70124;70146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102395633-102432561&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.689655172414 0.97875 -4.00952068966 0.9922 -1.45043793103 -2.55908275862 -0.087432362715 0.143443657306 73530 2246 2246;9900;30034;37715;42789;48132;52915;53220;64824;73530 -10.7348206897 0.4375 -7.33623103448 -3.39858965517 -0.0487738872129 0.277163973165 70842 715 715;21243;24877;42637;43017;45832;46589;56731;57300;70842 0.0 0.126458107364 chr15:43615394-43616690- ENST00000020673.5,ENST00000406432.5,ENST00000472685.5 UTR5,UTR5intron,NCintron coding exon(s) PSD alternative first exon 69971 577721 chr7:27184249-27184311+ NoOverlap chr7 27184249 27184311 + 3.10983807132 21 0.887434195468 2.15747618108 0.952361890248 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27184248;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184249-27184311%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27184249-27184311&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0180754380693 -0.0825100502372 0.374798357023 27223868 27223930 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27223867;63;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27184249-27184311%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27223868-27223930&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HALAGGYFTANFSTRHVIPPFITKFCWGKPK Same 578760 chr7:27184249-27184311+ 68821 68821 1150 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.492063492063 1.05882352941 0.585723809524 0.9533 0.657342857143 -0.071619047619 -0.000402018059588 0.309248099186 41701 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -5.3204047619 0.9095 -8.2296 2.9091952381 -0.00293417801967 0.508412298092 36863 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000006015.3 AntiCDSintron not annotated putative regulatory region 70006 577697 chr7:27156706-27156735+ NoOverlap chr7 27156706 27156735 + 5.93113999411 10 0.880796520943 3.43837976456 2.49276022955 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27156705;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27156706-27156735%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27156706-27156735&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0213348957625 -0.082816330321 0.429861466502 27196325 27196354 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27196324;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27156706-27156735%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27196325-27196354&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PPPPISAVLTGGLAPQGPQPPR Same 578736 chr7:27156706-27156735+ 68511 68511 1495 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.566666666667 0.428571428571 6.19868 0.9954 3.8186 2.38008 0.123893963925 0.40669828863 13621 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 1.1492 0.7296 -2.73885 3.88805 0.0207943037974 0.474915302234 26713 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000519842.1 AntiUTR5 not annotated putative regulatory region 70008 577705 chr7:27164984-27165055+ NoOverlap chr7 27164984 27165055 + 2.63545003037 24 0.893368047608 0.886537524561 1.74891250581 ENST00000343483.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27164983;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27164984-27165055%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27164984-27165055&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0526497945271 -0.0828434511339 0.507275475513 27204603 27204674 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27204602;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27164984-27165055%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27204603-27204674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TTSIVSQGQSVSVKRGTVTPSGRQRFR Same 578744 chr7:27164984-27165055+ 68882 68882 1126 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.569444444444 0.521739130435 -0.0233875 0.9889 -2.9224625 2.899075 0.0711023877306 0.590221702586 19545 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -0.0739541666667 0.8781 -15.6696583333 15.5957041667 0.342045129324 1.00763813835 4281 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000343483.6,ENST00000396345.1,ENST00000465941.1 AntiCDS,AntiCDSintron,AntiNCintron not annotated putative regulatory region 70053 501032 chr14:28770640-28770681+ NoOverlap chr14 28770640 28770681 + 4.37797149164 14 0.928775245507 1.43108580155 2.94688569009 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;28770639;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28770640-28770681%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A28770640-28770681&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0429792036219 -0.0834121544261 0.558184411797 29239846 29239887 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29239845;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A28770640-28770681%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29239846-29239887&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LIGSCGESVEDKLFICYNCIV Same 502924 chr14:28770640-28770681+ 69317 69317 736 0 1450 28760181 28778530 2163 2163;14197;36923;41398;42176;43702;50813;50822;52129;52228;54035;56879;58234;62727;63095;70053 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:28760181-28778530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.428571428571 0.0 -0.769664285714 0.9782 1.0255 -1.79516428571 -0.0368167142692 0.144760023294 64765 5183 5183;7918;14909;29996;30517;31515;32576;37494;38808;51070;51864;60964;64765;65511;72426;73775 -9.56951428571 0.7301 -4.31294285714 -5.25657142857 -0.0299746797094 0.15839343705 57098 4954 4954;9292;12758;16948;18874;27633;34980;36040;37692;41881;48332;48738;54395;57098;60202;72515 0.0 0.0 not annotated putative regulatory region 70055 512313 chr16:72787667-72787699+ NoOverlap chr16 72787667 72787699 + 4.98177261786 11 0.637121038723 3.32756367055 1.65420894731 ENST00000268489.9,ENST00000397992.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72787666;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72787667-72787699%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72787667-72787699&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0715214461615 -0.083419441836 0.348668153861 72821566 72821598 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72821565;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72787667-72787699%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72821566-72821598&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ARSRTPGSGTSR Same 513957 chr16:72787667-72787699+ 69483 69483 572 0 1044 72786749 72802320 1595 1595;21079;37333;39725;51719;54149;65275;67341;70055 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72786749-72802320&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.727272727273 1.15384615385 -4.68479090909 0.9348 -4.4532 -0.231590909091 -0.0139435845723 0.257373342482 49851 2453 2453;8633;10458;20402;20517;20622;22628;49851;70811 -38.6523636364 0.9679 -40.1148454545 1.46248181818 0.0487266554608 0.0786009772661 18989 1956 1956;9416;10906;18989;19008;25678;39101;45598;59430 0.0 0.0 ENST00000563328.4,ENST00000268489.9,ENST00000584072.1 NC,AntiCDS,AntiNC not annotated putative regulatory region 70124 481969 chr10:102421125-102421154- NoOverlap chr10 102421125 102421154 - 5.83837005496 10 0.78014648661 3.46775993109 2.37061012387 ENST00000224862.7,ENST00000369956.6,ENST00000425536.1,ENST00000432590.5,ENST00000440407.5,ENST00000457067.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102421124;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102421125-102421154-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102421125-102421154&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0365975920966 -0.0840924206318 0.41547937478 104180882 104180911 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104180881;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102421125-102421154-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104180882-104180911&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ALAPLRTAPSVAPSAVYCACAVR Same 483886 chr10:102421125-102421154- 68841 68841 1283 0 470 102395633 102432561 680 680;6932;11855;22696;25308;48284;57642;69925;70124;70146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102395633-102432561&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.7 1.09090909091 7.3347 0.9693 3.09855 4.23615 0.176343979397 0.563027279302 9900 2246 2246;9900;30034;37715;42789;48132;52915;53220;64824;73530 2.01443 0.4417 1.48769 0.52674 -0.0170459360067 0.338847884167 45832 715 715;21243;24877;42637;43017;45832;46589;56731;57300;70842 0.0 0.122488377037 chr15:43617571-43618356- ENST00000492902.2,ENST00000457067.1 NC,AntiCDS coding exon(s) PSD alternative first exon 70146 481965 chr10:102419106-102419138- NoOverlap chr10 102419106 102419138 - 4.8351363052 11 0.831006332494 -0.267472689802 5.102608995 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;102419105;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102419106-102419138-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A102419106-102419138&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0993565216465 -0.0843923650647 0.782823852338 104178863 104178895 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;104178862;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A102419106-102419138-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A104178863-104178895&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVMWQPPRDTR Same 483882 chr10:102419106-102419138- 68686 68686 1460 0 470 102395633 102432561 680 680;6932;11855;22696;25308;48284;57642;69925;70124;70146 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:102395633-102432561&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.636363636364 0.6 -0.377463636364 1.0 -4.39873636364 4.02127272727 -0.0186558668745 0.579282067702 53220 2246 2246;9900;30034;37715;42789;48132;52915;53220;64824;73530 -8.90518181818 0.4463 -9.50270909091 0.597527272727 -0.0295516194871 0.337684648384 56731 715 715;21243;24877;42637;43017;45832;46589;56731;57300;70842 0.0 0.125406096419 chr15:43615394-43616690- ENST00000020673.5,ENST00000406432.5,ENST00000472685.5 UTR5,UTR5intron,NCintron coding exon(s) PSD alternative first exon 70170 586875 chr8:64368369-64368398- NoOverlap chr8 64368369 64368398 - 5.66140996814 10 0.997289997711 0.893929988146 4.76747997999 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;64368368;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64368369-64368398-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A64368369-64368398&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0861735222343 -0.0846243491848 0.722837521608 65280926 65280955 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;65280925;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64368369-64368398-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A65280926-65280955&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSNSALGTLLMDEVSGQSSCEDWFPNGMSSSQMR Same 587816 chr8:64368369-64368398- 70851 70851 -681 0 5341 64368369 64380096 7413 7413;23157;28942;34300;70170;70979;72036 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:64368369-64380096&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.0 -0.98956 0.9761 -8.15764 7.16808 -0.0165882694423 0.810923252894 51744 9455 9455;23665;25300;33558;51744;54451;62241 -5.95335 0.5421 -14.8414 8.88805 -0.0154921875185 0.666264154552 44674 29002 29002;44391;44674;45945;47356;48925;63213 0.0 0.0 ENST00000521958.1 NC not annotated potentially spurious 70173 482202 chr10:113125826-113125891- NoOverlap chr10 113125826 113125891 - 2.63953627781 22 0.907606622416 -0.215263686397 2.85479996421 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113125825;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125826-113125891-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113125826-113125891&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.10698240304 -0.0846752010792 0.637701326647 114885585 114885650 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114885584;66;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125826-113125891-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114885585-114885650&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NCIRGVKFFSGL*SYYFRSPAFQCFR Same 484126 chr10:113125826-113125891- 69299 69299 874 9 719 113118964 113126911 1110 1110;6516;16816;37245;38490;54651;58469;62875;67669;70173 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118964-113126911&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.454545454545 0.883928571429 -2.54784090909 0.9875 -2.06142272727 -0.486418181818 -0.059033615614 0.276127177793 72407 4406 4406;18572;33940;40718;63931;65767;72176;72358;72407;73429 -3.48143181818 0.9227 -4.06693636364 0.585504545455 -0.00105074114279 0.42289620402 35901 6655 6655;10141;25415;26332;35901;38764;51629;51984;53928;72240 0.0 0.0 ENST00000346198.5 AntiCDSintron not annotated putative regulatory region 70238 577644 chr7:27130913-27130945+ NoOverlap chr7 27130913 27130945 + 5.02752744068 11 0.700988368464 0.512036301873 4.51549113881 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27130912;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130913-27130945%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27130913-27130945&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0747437707564 -0.0856423558967 0.713651120663 27170532 27170564 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27170531;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27130913-27130945%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27170532-27170564&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HQSSSRSSPAQRAPRPVPHVQRPHQWAHR Same 578683 chr7:27130913-27130945+ 69694 69694 544 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.878787878788 1.07142857143 -1.17106363636 0.7257 -3.03415454545 1.86309090909 -0.0135584070813 0.399218312665 49564 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -3.88190909091 0.3689 -8.64980909091 4.7679 -0.0221173733494 0.516732388968 49893 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000317201.6,ENST00000467897.2 NCintron,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 70244 526074 chr18:56873924-56873950- NoOverlap chr18 56873924 56873950 - 6.39277776082 9 0.822997041445 3.76884459125 2.62393316958 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;56873923;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A56873924-56873950-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A56873924-56873950&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0340643541621 -0.0857070607898 0.426009365467 54541155 54541181 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;54541154;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A56873924-56873950-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A54541155-54541181&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PLQKGIANRCLAP Same 527518 chr18:56873924-56873950- 68666 68666 1578 0 17506 56873607 56873950 31192 31192;32944;35519;70244 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:56873607-56873950&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.518518518519 0.551020408163 -0.928933333333 0.9925 -1.39777777778 0.468844444444 -0.0448063414066 0.272901657565 69108 15694 15694;38183;55401;69108 -8.07102222222 0.6411 -4.50803333333 -3.56298888889 -0.0281609732544 0.186483705761 55463 22856 22856;27950;34366;55463 0.0 0.0 ENST00000586391.1,ENST00000254442.7,ENST00000589935.1 NC,AntiCDSintron,AntiUTR5intron not annotated potentially spurious 70265 507864 chr15:95497806-95497850+ NoOverlap chr15 95497806 95497850 + 3.86729996204 15 0.889817654688 0.357726720969 3.50957324107 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;95497805;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95497806-95497850%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A95497806-95497850&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0766228230131 -0.0858783955803 0.646980289391 96041035 96041079 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;96041034;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95497806-95497850%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A96041035-96041079&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") W*FQRITYHNILEYH Same 509595 chr15:95497806-95497850+ 69177 69177 1088 2 26578 95497806 95497850 Best 70265 70265 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:95497806-95497850&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.377777777778 0.75 -1.33718666667 1.0 -4.44498666667 3.1078 -0.0151450386929 0.536215541729 50687 Best 50687 50687 -2.88453333333 0.9358 -5.83885333333 2.95432 -0.00186855702708 0.475815256317 36291 Best 36291 36291 0.0 0.0 ENST00000554837.5 NC not annotated potentially spurious 70340 590039 chr9:120793125-120793175+ NoOverlap chr9 120793125 120793175 + 3.62994710487 17 0.898284257626 1.42055893821 2.20938816667 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;120793124;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A120793125-120793175%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A120793125-120793175&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.044808573541 -0.0869188531868 0.49991283221 123555403 123555453 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;123555402;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A120793125-120793175%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A123555403-123555453&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") NRVPRGTDLSERPGARDLAPGSQLLGTLGPPEPCSGR Same 590986 chr9:120793125-120793175+ 69249 69249 1091 0 936 120793125 120799627 1441 1441;36018;70340;71913 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:120793125-120799627&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.745098039216 1.13019390582 -2.48652941176 0.982 -5.21772941176 2.7312 -0.0349874759178 0.516218416367 63676 1543 1543;12540;63676;71284 -5.12416470588 0.3841 -9.272 4.14783529412 -0.0115035077609 0.534185068689 41840 1127 1127;24341;36619;41840 0.0 0.0 ENST00000453291.1,ENST00000476481.1 AntiUTR5,AntiNC protein-coding gene protein-coding gene ENSG00000214654; found after looking at high-scoring intergenic PCCRs 70384 541017 chr2:173198385-173198504- NoOverlap chr2 173198385 173198504 - 1.71948998421 40 0.929948119326 0.291130008548 1.42835997567 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;173198384;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198385-173198504-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A173198385-173198504&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0717327514931 -0.0875753321479 0.56221670902 174063113 174063232 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;174063112;120;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198385-173198504-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A174063113-174063232&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LKVSYRYINSRPVKKMS*TQEMELNCSPTLDAMASFITKNKPLGFTIETEK Same 542388 chr2:173198385-173198504- 68760 68760 1624 18 8077 173198177 173198791 11645 11645;14566;27301;64264;68000;70384;71375 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:173198177-173198791&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.441666666667 0.521739130435 -1.51533 0.9881 -0.9755425 -0.5397875 -0.0348636246622 0.334830497548 63590 17915 17915;26281;30225;52527;56025;63590;73136 -2.618485 0.5971 -1.009635 -1.60885 0.0111328719274 0.406659655107 30281 26199 26199;30281;33015;38868;44044;58152;65076 0.0 0.0 ENST00000423106.2,ENST00000419609.5,ENST00000338983.7,ENST00000476618.5 NC,NCintron,AntiCDSintron,AntiNCintron not annotated potentially spurious 70464 491308 chr12:49020566-49020658+ NoOverlap chr12 49020566 49020658 + 2.00924517743 31 0.76678406269 0.619429004769 1.38981617266 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;49020565;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49020566-49020658%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A49020566-49020658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0848542000893 -0.0887821294541 0.509961668393 49414349 49414441 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;49414348;93;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A49020566-49020658%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A49414349-49414441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IDKYPPPSPR*H*APPPPHHHPFPPDQQQFGD Same 493285 chr12:49020566-49020658+ 70549 70549 -85 12 27 49020566 49033910 27 27;1869;2293;3141;4665;5179;14171;29832;59889;70464 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:49020566-49033910&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.623655913978 0.336956521739 -1.6918 0.9372 -3.64841290323 1.95661290323 -0.0119924742924 0.531063793274 48473 391 391;2014;2802;4299;4455;6825;32787;42176;48473;48787 -4.02073225806 0.3885 -5.69611290323 1.67538064516 -0.00252937587858 0.512396846546 36637 2210 2210;2935;3946;7899;19234;24986;25843;31483;36637;57651 0.0 0.0437033969724 chr19:35023236-35023343+ ENST00000301067.11 AntiUTR3 not annotated potentially spurious 70489 546255 chr21:8215385-8215591+ NoOverlap chr21 8215385 8215591 + 0.545275370077 69 0.382531958252 0.0402260802794 0.505049289798 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8215384;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215385-8215591%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8215385-8215591&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0995581435083 -0.0891392757141 0.47934924496 114850 115056 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;114849;207;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8215385-8215591%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A114850-115056&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WSTSARVRTRKMVNYAWAGRSQRKLWWRSVAVLTCKSVVRPGYRGERLIEPSSSWFPPKFPSG*LALSQTRR Same 547668 chr21:8215385-8215591+ 68737 68737 1752 8 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.584541062802 0.969421487603 -1.4386057971 0.2635 -1.22028115942 -0.218324637681 -0.0304837585306 0.368718214115 60833 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -3.80022318841 0.2292 -3.20813478261 -0.592088405797 -0.024143429749 0.475969944043 51703 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.00707802069349 chr3:9842199-9842243- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 70571 536872 chr2:219279457-219279492+ NoOverlap chr2 219279457 219279492 + 4.57194173336 12 0.692984664683 3.25235833724 1.31958339612 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;219279456;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219279457-219279492%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A219279457-219279492&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0792828461915 -0.0903727062658 0.323394527493 220144179 220144214 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;220144178;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A219279457-219279492%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A220144179-220144214&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EPGCGCQTVPGGGQGRGAAGGR Same 538240 chr2:219279457-219279492+ 69998 69998 573 0 220 219269630 219279492 274 274;812;10599;20617;42437;70571 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:219269630-219279492&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.861111111111 0.981818181818 0.909708333333 0.759 0.254766666667 0.654941666667 -0.0164217063811 0.303069678578 51627 408 408;491;1561;1860;15870;51627 -5.04723333333 0.4195 -8.21895 3.17171666667 -0.0284253886324 0.457178096402 55697 1012 1012;1034;1527;1616;16190;55697 0.0 0.0579107470515 chr8:143718775-143718905+ ENST00000336576.9,ENST00000477917.5,ENST00000425450.5 UTR5,NC,UTR5intron pseudo-exon TUBA4B pseudo-exon 70572 554104 chr3:173395998-173396024+ NoOverlap chr3 173395998 173396024 + 6.24558895164 9 0.72976272221 4.18840004711 2.05718890453 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;173395997;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A173395998-173396024%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A173395998-173396024&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0588861668418 -0.0904144731975 0.355843692822 173113788 173113814 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;173113787;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A173395998-173396024%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A173113788-173113814&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GEGEREGGSVCAR Same 555053 chr3:173395998-173396024+ 69596 69596 976 0 512 173395998 173398001 763 763;48543;66812;70572 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:173395998-173398001&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.62962962963 1.03846153846 -7.78002222222 0.9349 -9.00978888889 1.22976666667 0.027832585594 0.382920648789 29552 5999 5999;29552;51158;53657 -10.5793666667 0.3916 -9.78858888889 -0.790777777778 -0.00400252039718 0.269493044157 37421 10333 10333;31080;37421;52265 0.0 0.0 not annotated putative regulatory region 70625 561531 chr4:41857345-41857374- NoOverlap chr4 41857345 41857374 - 5.59643983841 10 0.838300144961 1.5564201355 4.04001970291 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41857344;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41857345-41857374-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41857345-41857374&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0588089043302 -0.0911843157487 0.635507433197 41859362 41859391 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41859361;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41857345-41857374-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41859362-41859391&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HSMQQSQEPALGLDNLISF Same 562522 chr4:41857345-41857374- 69084 69084 1541 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.633333333333 0.0 -2.1761 0.9792 -4.46385 2.28775 -0.0486236596399 0.428993485692 70588 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -10.34244 0.8526 -12.8445 2.50206 -0.050824572572 0.394396839657 71680 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 not annotated putative regulatory region 70640 527516 chr19:15398227-15398283+ NoOverlap chr19 15398227 15398283 + 3.00714733726 19 0.749469347436 2.30959469354 0.697552643716 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15398226;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15398227-15398283%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15398227-15398283&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0794415814504 -0.0913508640161 0.32808838308 15509038 15509094 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15509037;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15398227-15398283%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15509038-15509094&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") MPWREPGGPEVQSGVRSPEAGPEK Same 528962 chr19:15398227-15398283+ 70489 70489 151 0 2369 15398227 15398985 3366 3366;10120;48375;70640 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15398227-15398985&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.684210526316 0.464673913043 -3.20926315789 0.956 -4.21127894737 1.00201578947 -0.0552883676219 0.380991653304 72008 5988 5988;14383;14592;72008 -10.0109684211 0.4403 -11.7707631579 1.75979473684 -0.0393401394233 0.427132685377 64726 13120 13120;33994;57525;64726 0.0 0.0 ENST00000595087.5,ENST00000397410.9,ENST00000593845.5 AntiNC,AntiCDSintron,AntiNCintron not annotated potentially spurious 70783 527303 chr19:12793666-12793767+ NoOverlap chr19 12793666 12793767 + 2.28180883825 34 0.766370910919 2.34310299684 -0.0612941585919 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;12793665;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12793666-12793767%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A12793666-12793767&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0104043836988 -0.0933174126476 0.332066506984 12904480 12904581 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;12904479;102;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A12793666-12793767%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A12904480-12904581&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGAFPADAAEALPIQGPILPSDATAVSGQIPGIPSPALPGRAAAPGRGPGFSRAGGCPGTESPRPGSR Same 528749 chr19:12793666-12793767+ 71044 71044 -261 0 96 12775496 12806530 113 113;1182;3126;12882;12916;19147;21814;28171;30495;34266;70783 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:12775496-12806530&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.764705882353 0.874093605801 4.65462941176 0.9168 5.05669117647 -0.402061764706 0.207667547836 0.363550518509 8474 845 845;1545;3224;5434;8474;11177;11868;16562;28502;47510;67609 2.70254705882 0.5438 1.74778235294 0.954764705882 0.145354558654 0.504886405328 8225 40 40;3058;6466;7449;7608;8225;15095;31105;55016;67420;71961 0.0 0.0115531404931 chr20:25057769-25058102- ENST00000589765.1 AntiNCintron not annotated putative regulatory region 70807 525526 chr18:26549376-26549429- NoOverlap chr18 26549376 26549429 - 3.0748944415 18 0.716702694913 1.69982773066 1.37506671084 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26549375;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26549376-26549429-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26549376-26549429&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0877410481065 -0.0936851706084 0.40547078986 24129340 24129393 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;24129339;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26549376-26549429-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A24129340-24129393&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GWLDRRGLAPDLRGAPQVFNDSLNVAVGK Same 526969 chr18:26549376-26549429- 70638 70638 169 0 513 26546760 26549891 768 768;8399;25501;30998;36827;39211;40894;58515;70807;71876 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26546760-26549891&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.835913312693 -0.570733333333 0.9188 -5.3885 4.81776666667 0.0313979077801 0.707413944099 28171 2222 2222;11084;12141;14614;15029;28171;62885;67707;71661;73517 -8.44887777778 0.4235 -7.59583888889 -0.853038888889 -0.0396871919731 0.328794104936 64991 2942 2942;16429;16512;26392;33196;52681;55735;64991;73449;73633 0.0 0.11502605357 chr17:61590533-61591180- ENST00000408011.7,ENST00000580191.5,ENST00000317932.11 UTR5,CDSintron,UTR5intron coding exon(s) KCTD1 5' extension 70861 482376 chr10:117551543-117551602- NoOverlap chr10 117551543 117551602 - 3.08434987068 20 0.920607309071 1.06332498342 2.02102488726 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117551542;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551543-117551602-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117551543-117551602&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0655751076864 -0.0944269064848 0.507516265986 119311054 119311113 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119311053;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117551543-117551602-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119311054-119311113&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGGRTRKCAKFVCSGSRRAASASLSLS Same 484303 chr10:117551543-117551602- 69959 69959 902 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.583333333333 1.04895104895 -0.87367 0.9967 -1.25856 0.38489 -0.0208173549237 0.339093642236 54713 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -6.853855 0.8518 -9.53484 2.680985 -0.0218290329877 0.486635117796 49621 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 not annotated putative regulatory region 70873 478911 chr10:113125850-113125888+ NoOverlap chr10 113125850 113125888 + 4.14547679974 13 0.907606622416 -0.437122950187 4.58259974993 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113125849;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125850-113125888%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113125850-113125888&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.122214167652 -0.0946884906673 0.753213665932 114885609 114885647 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114885608;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125850-113125888%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114885609-114885647&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAEIIRSQSAKKFDTSDAVSLSEISTK Same 480812 chr10:113125850-113125888+ 70059 70059 814 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.435897435897 1.18181818182 0.541584615385 0.9875 -1.546 2.08758461538 -0.00571956728277 0.431759673671 44546 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -0.804676923077 0.9225 -3.58385384615 2.77917692308 0.00887222257306 0.455183043027 31210 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 70935 665032 chr19:14563705-14563734+ Extension chr19 14563705 14563734 + 3.25926996469 10 0.684029907683 -5.07620988786 8.33547985256 chr19:14563657-14563734+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;14563704;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A14563705-14563734%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A14563705-14563734&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.240845308104 -0.0957148565825 1.01770562611 14674517 14674546 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;14674516;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A14563705-14563734%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A14674517-14674546&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LDPSEYSCPLGPPPGLLGGSGR Same 665647 chr19:14563705-14563734+ 70390 70390 545 0 407 14562387 14563734 570 570;70935 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:14562387-14563734&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.7 0.612244897959 -1.71907 0.76 -6.25791 4.53884 -0.0157450197746 0.612958855901 51120 808 808;51120 -13.36853 0.5119 -11.53388 -1.83465 -0.00272156488508 0.229274400253 36744 2081 2081;36744 0.0 0.0350820900554 chr19:49166041-49166215+ ENST00000215567.9,ENST00000594807.5,ENST00000594545.5,ENST00000593637.5 ExtensionMid,NC,UTR5intron,NCintron coding exon(s) TECR intronic CDS 70971 654717 chr17:48593684-48593755+ Extension chr17 48593684 48593755 + 2.73861238609 24 0.885910200656 2.52023326109 0.218379124999 chr17:48593648-48593755+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48593683;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593684-48593755%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48593684-48593755&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0252058455311 -0.0961908691149 0.306976150562 46671046 46671117 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46671045;72;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593684-48593755%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46671046-46671117&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") YELIWVILEGLICGSWSL*PCASRFMMY None NA NA 9 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.430555555556 1.09090909091 -0.838291666667 1.0 -0.00241666666667 -0.835875 -0.0281280816067 0.261230517155 59377 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -10.0382416667 0.9211 -8.31437083333 -1.72387083333 -0.0497323661304 0.320263886664 71238 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000239151.5,ENST00000552000.2 NCintron,AntiUTR5,AntiNCintron not annotated putative regulatory region 70979 586876 chr8:64368412-64368453- NoOverlap chr8 64368412 64368453 - 4.24342139704 14 0.990029319121 0.568642920681 3.67477847636 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;64368411;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64368412-64368453-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A64368412-64368453&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0950508042023 -0.0964934214718 0.653374793265 65280969 65281010 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;65280968;42;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64368412-64368453-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A65280969-65281010&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLLEENPVSQLGLPSGDGARKTVQLCSGHPADG Same 587817 chr8:64368412-64368453- 71356 71356 -377 0 5341 64368369 64380096 7413 7413;23157;28942;34300;70170;70979;72036 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:64368369-64380096&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.595238095238 0.0 0.650778571429 0.97 -2.88271428571 3.53349285714 0.0176059330846 0.56608410816 33558 9455 9455;23665;25300;33558;51744;54451;62241 -8.9751 0.587 -6.59184285714 -2.38325714286 -0.0373260285856 0.250285312089 63213 29002 29002;44391;44674;45945;47356;48925;63213 0.0 0.0 ENST00000521958.1 NC not annotated potentially spurious 70990 564506 chr5:77847920-77848051+ NoOverlap chr5 77847920 77848051 + 2.13469999977 44 0.893541618982 2.38122499903 -0.246524999267 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr5;77847919;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77847920-77848051%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr5%3A77847920-77848051&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0878954273603 -0.096604738921 0.349538408612 77143744 77143875 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr5;77143743;132;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr5%3A77847920-77848051%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr5%3A77143744-77143875&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLIQIDCKLLQEKLFPEMGFSH*QGCFSQDPVSCCSHFVLHQSHNCVRDVL Same 565494 chr5:77847920-77848051+ 70057 70057 933 18 1311 77844392 77852299 1970 1970;21990;36224;37985;59349;64374;70990 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5:77844392-77852299&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.515151515152 0.233421750663 -1.26378181818 0.9985 -2.38739545455 1.12361363636 0.0341557716351 0.499238124879 27249 7731 7731;27249;28623;33111;43677;53467;56140 -8.40477045455 0.8728 -10.2303363636 1.82556590909 0.00118143947979 0.541574497389 34772 5174 5174;34772;36018;49756;55548;66524;72923 0.0 0.0 ENST00000522370.1 AntiUTR5intron not annotated putative regulatory region 71033 478483 chr10:100877406-100877441+ NoOverlap chr10 100877406 100877441 + 4.62766666214 12 0.861005569543 0.648149974644 3.97951668749 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100877405;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100877406-100877441%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100877406-100877441&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0816774774141 -0.0972201307194 0.665093677076 102637163 102637198 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102637162;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100877406-100877441%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102637163-102637198&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KMDGTDRNLEIPTR Same 480378 chr10:100877406-100877441+ 69770 69770 1263 0 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.9 0.615783333333 0.9995 -0.9533 1.56908333333 -0.01240452618 0.378870253618 48765 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 -7.98766666667 0.716 -14.7151666667 6.7275 -0.0303337363105 0.587473957398 57403 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 71052 481109 chr10:75401238-75401273- NoOverlap chr10 75401238 75401273 - 4.78044991195 12 0.803692683299 3.25973340372 1.52071650823 ENST00000372524.4,ENST00000535216.2 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75401237;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401238-75401273-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75401238-75401273&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0563564052651 -0.0975236235464 0.345571963281 77160996 77161031 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77160995;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401238-75401273-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77160996-77161031&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LVPGRQHQAFCARRAPL Same 483023 chr10:75401238-75401273- 70039 70039 1013 0 3027 75401238 75417825 4228 4228;6685;19248;23964;26231;42519;58489;66465;71052;72621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75401238-75417825&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.694444444444 0.701298701299 -6.48875833333 0.9592 -6.04988333333 -0.438875 -0.00426734108381 0.264204904573 43730 9680 9680;11699;11870;23869;27311;40902;43730;53944;63556;72593 -18.9797 0.8171 -21.07865 2.09895 -0.0130856306262 0.319304055084 42916 8483 8483;11906;14750;22472;22714;29979;35309;42843;42916;72930 0.0 0.0971480351235 chr8:37695980-37696222+ ENST00000372524.4,ENST00000418818.6 CDS,NC not annotated putative regulatory region 71071 514151 chr16:50391418-50391447- NoOverlap chr16 50391418 50391447 - 5.61731018424 10 0.801664759289 2.29634004831 3.32097013593 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;50391417;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A50391418-50391447-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A50391418-50391447&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.057675926241 -0.09783734714 0.543069416785 50425329 50425358 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;50425328;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A50391418-50391447-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A50425329-50425358&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RWRQGKAARPPPR Same 515803 chr16:50391418-50391447- 69803 69803 1268 0 6446 50386980 50391447 9104 9104;25045;26626;71071 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:50386980-50391447&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 1.13636363636 -9.85842 0.988 -5.13866 -4.71976 0.0635331380425 0.125572679214 20670 2539 2539;8394;15399;20670 -20.77726 0.539 -10.62687 -10.15039 0.0579567181236 0.016592970996 17207 4491 4491;17207;30914;55618 0.0 0.0 ENST00000566876.1 NCintron not annotated potentially spurious 71075 535051 chr2:131040244-131040270+ NoOverlap chr2 131040244 131040270 + 6.01481119792 9 0.670244059578 3.71976664331 2.2950445546 ENST00000326016.9,ENST00000355771.7,ENST00000392953.7,ENST00000525839.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;131040243;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131040244-131040270%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A131040244-131040270&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0782399834173 -0.0979044217558 0.390053190188 131797817 131797843 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;131797816;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A131040244-131040270%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A131797817-131797843&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AVTGDPVGGGLTTSARRATSGSAASAQTCSAR Same 536404 chr2:131040244-131040270+ 70362 70362 713 0 55 131035089 131040270 62 62;71075 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:131035089-131040270&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.740740740741 1.18681318681 -12.0879111111 0.8248 -2.85237777778 -9.23553333333 -0.00186217125863 0.117061748535 42452 53 53;42452 -36.8493555556 0.6818 -23.3019888889 -13.5473666667 -0.0531451414799 -0.0239833728611 72391 1908 1908;72391 0.0 0.105682411996 chrX:63697276-63697304- ENST00000326016.9,ENST00000439368.6,ENST00000409303.5 CDS,NC,CDSintron protein-coding gene protein-coding gene ENSG00000284479 71078 546245 chr21:8213982-8214167+ NoOverlap chr21 8213982 8214167 + 2.13643544672 62 0.528678593315 2.59430965901 -0.457874212294 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8213981;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8213982-8214167%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8213982-8214167&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.0284561152481 -0.0979604666435 0.359208582229 113442 113627 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;113441;186;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8213982-8214167%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A113442-113627&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VNREEPSAESPPRGGARDMWRTEDPLPGAARGGPKSF*SRPSPWTV*GR*RPPARRARVFPESGCLGMQPK Same 547659 chr21:8213982-8214167+ 69494 69494 1584 24 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.763440860215 0.961049284579 -2.24930806452 0.2617 -1.33244677419 -0.916861290323 -0.0377779593485 0.295065065355 65293 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -2.88474354839 0.3822 -2.10660967742 -0.778133870968 0.0185149134259 0.469297142459 27507 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0572327399434 chr11:67365136-67365630- ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 71132 560439 chr4:157361519-157361545+ NoOverlap chr4 157361519 157361545 + 6.27593322595 9 0.980193789578 2.42417767313 3.85175555282 ENST00000296526.11,ENST00000393815.6,ENST00000507898.5,ENST00000510854.1 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;157361518;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157361519-157361545%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A157361519-157361545&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0652421721104 -0.098967554939 0.587404229494 158282671 158282697 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;158282670;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A157361519-157361545%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A158282671-158282697&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CYLCYFPREEPQ Same 561423 chr4:157361519-157361545+ 70965 70965 167 0 430 157360983 157365960 611 611;15695;15785;16090;17171;20574;21787;68912;71132 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:157360983-157365960&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.444444444444 0.771428571429 1.40367777778 1.0 -0.8022 2.20587777778 -0.0228301950942 0.402214635378 56071 3893 3893;6182;6226;10710;11582;13344;21003;56071;56585 -1.85764444444 0.999 -6.94467777778 5.08703333333 -0.00813717296945 0.515290545191 39824 3522 3522;3805;7560;13336;15714;28221;29180;32592;39824 0.0 0.0749228505899 chr11:105971914-105972028+ ENST00000296526.11,ENST00000323661.10,ENST00000264426.13,ENST00000503980.1 CDS,NC,CDSintron,NCintron coding exon(s) GRIA2 alternative final exon 71191 478907 chr10:113125550-113125609+ NoOverlap chr10 113125550 113125609 + 2.86925007254 20 0.878854047456 0.337675011158 2.53157506138 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113125549;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125550-113125609%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113125550-113125609&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0995928555025 -0.100018619779 0.577042155727 114885309 114885368 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114885308;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113125550-113125609%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114885309-114885368&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FGPCQSEIIVFLILSLMDDSEFSNGPAPMTNTILIFINCFDNANFDAVVK Same 480808 chr10:113125550-113125609+ 70249 70249 942 0 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.705882352941 0.354545 0.9875 0.51533 -0.160785 -0.000240211735381 0.295454823622 41627 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -0.62461 0.9231 -0.49913 -0.12548 0.0177714224086 0.385887557016 27747 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 71244 652083 chr17:2400714-2400851+ Extension chr17 2400714 2400851 + 1.49080646751 46 0.861937365032 0.0905543079843 1.40025215952 chr17:2400606-2400851+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2400713;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400714-2400851%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2400714-2400851&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.099595520389 -0.101097042027 0.580414441042 2304008 2304145 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2304007;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400714-2400851%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2304008-2304145&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AASSSVSMLIAPRAAGGAPGPRLRPASRAQVRLAGRQEGGITSGGRQGWAAQRTPQGR Same 652711 chr17:2400714-2400851+ 70150 70150 1094 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.811594202899 0.830213903743 -1.41420869565 0.9838 -4.04991521739 2.63570652174 0.0807421228247 0.642300435834 18174 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -7.43167608696 0.5729 -11.1042608696 3.67258478261 0.0357085275891 0.629880332789 22097 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 ENST00000174618.4 AntiUTR5 not annotated putative regulatory region 71246 582274 chr7:114631528-114631557- NoOverlap chr7 114631528 114631557 - 5.33352999687 10 0.810753032731 0.710670101643 4.62285989523 ENST00000350908.8,ENST00000360232.8,ENST00000378237.7,ENST00000390668.3,ENST00000393489.7,ENST00000393491.7,ENST00000393494.6,ENST00000393495.7,ENST00000393498.6,ENST00000403559.8,ENST00000408937.7 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;114631527;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114631528-114631557-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A114631528-114631557&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0892178128352 -0.101129622191 0.710542048138 114271583 114271612 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;114271582;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A114631528-114631557-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A114271583-114271612&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLGCQLLLLLLLLLLLVSENPNQ Same 583235 chr7:114631528-114631557- 70016 70016 1230 0 321 114629847 114631629 437 437;4220;35515;64095;71246 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:114629847-114631629&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.0 3.25812 0.8771 -1.79305 5.05117 0.00888821501346 0.649976865382 37278 434 434;2787;4466;37278;71967 5.63511 0.6306 -5.55709 11.1922 0.216443609071 0.762155831125 5827 378 378;3418;5157;5827;54610 0.0 0.0 ENST00000350908.8,ENST00000412402.5 AntiCDS,AntiNC not annotated low complexity region 71375 541023 chr2:173198732-173198791- NoOverlap chr2 173198732 173198791 - 3.03978499174 20 0.967225909819 0.621084989607 2.41870000213 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;173198731;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198732-173198791-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A173198732-173198791&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0978979472729 -0.103416819596 0.560675429519 174063460 174063519 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;174063459;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A173198732-173198791-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A174063460-174063519&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ASICGKKRSEAGDTAQTVFTPLK Same 542394 chr2:173198732-173198791- 71065 71065 310 0 8077 173198177 173198791 11645 11645;14566;27301;64264;68000;70384;71375 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:173198177-173198791&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.55 0.743801652893 0.677345 0.9981 0.069 0.608345 0.0260414535395 0.360005944891 30225 17915 17915;26281;30225;52527;56025;63590;73136 -3.72234 0.6065 -4.922165 1.199825 -0.00650982238056 0.43577673542 38868 26199 26199;30281;33015;38868;44044;58152;65076 0.0 0.0 ENST00000423106.2,ENST00000419609.5,ENST00000338983.7,ENST00000476618.5 NC,NCintron,AntiCDSintron,AntiNCintron not annotated potentially spurious 71384 501056 chr14:29390460-29390501+ NoOverlap chr14 29390460 29390501 + 4.27576426949 14 0.899813621947 2.95521429607 1.32054997342 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;29390459;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A29390460-29390501%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A29390460-29390501&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0508120127847 -0.103566074764 0.347478174016 29859666 29859707 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;29859665;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A29390460-29390501%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A29859666-29859707&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") KRQPIKVIIWNLCR Same 502948 chr14:29390460-29390501+ 70353 70353 1031 0 14267 29380951 29390501 23607 23607;27512;35606;68965;71384 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:29380951-29390501&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.428571428571 1.03703703704 -0.33165 1.0 -1.35585714286 1.02420714286 -0.0211785112127 0.351548081954 54952 16283 16283;37208;54952;57031;73776 -3.15373571429 0.8225 -3.09504285714 -0.0586928571429 -0.0290953754362 0.347032445346 56295 24002 24002;41979;56295;66595;73483 0.0 0.0 ENST00000549515.1 NC not annotated potentially spurious 71389 518111 chr17:48626191-48626220+ NoOverlap chr17 48626191 48626220 + 5.51032001972 10 0.728792248417 2.96795987189 2.54236014783 ENST00000311177.6 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48626190;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626191-48626220%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48626191-48626220&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0734564268852 -0.10364271361 0.443042365924 46703553 46703582 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46703552;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48626191-48626220%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46703553-46703582&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ETWLEARPHSRDL Same 519512 chr17:48626191-48626220+ 70586 70586 803 0 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.9 -0.28711 0.9455 -1.7475 1.46039 -0.0431646777536 0.355516105128 68300 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -27.75892 0.9774 -22.33562 -5.4233 0.0506777104232 0.0571626188035 18609 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000311177.6,ENST00000567101.2 AntiCDS,AntiNCintron not annotated putative regulatory region 71477 484851 chr11:64246785-64246988+ NoOverlap chr11 64246785 64246988 + 1.157194131 68 0.510020913836 0.766099980649 0.39109415035 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;64246784;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64246785-64246988%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A64246785-64246988&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.110578483969 -0.105752856891 0.46951636709 64014257 64014460 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;64014256;204;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A64246785-64246988%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A64014257-64014460&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAPRRGRRRGRPGAAAACGAPGLGLAAPRPLPADPPALCPPRPPPELQPPKRFLCLALPPPPDHTPLKGQPLYRPLSPTPPPGR Same 486798 chr11:64246785-64246988+ 69465 69465 2012 0 352 64234553 64251600 482 482;7949;11664;35373;37203;39158;42405;46424;49558;51731;60488;66667;71477 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:64234553-64251600&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.794117647059 0.87818877551 -1.07507794118 0.4576 -2.95067352941 1.87559558824 0.0186351302319 0.576884295252 33136 794 794;4730;5278;33136;33224;35488;44543;51216;51598;54393;59534;66287;72035 -10.4270294118 0.3624 -11.2804235294 0.853394117647 -0.0342445284346 0.517335312005 60845 1965 1965;13537;15512;32934;42119;43278;50391;55760;56986;58611;60845;63722;65204 0.0 0.0125205070213 chr17:36949126-36949216+ ENST00000544553.1,ENST00000309318.7,ENST00000545800.1 NCintron,AntiUTR5,AntiNC under investigation; now made coding FKBP2 contains a potential 265aa single exon CDS in its complex 5' UTR region, conserved in placental mammals [chr11:64241280-64242077]. The recent discovery of excellent cDNA support from in-house Oxford Nanopore experiments influenced the decision to annotate this as a protein-coding gene, and ENSG00000286264 appeared in GENCODEv31. 71528 665932 chr19:35775533-35775658+ Extension chr19 35775533 35775658 + 1.3614000082 42 0.675956141211 -0.165716621315 1.52711662952 chr19:35775533-35775685+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35775532;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35775533-35775658%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35775533-35775658&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.172534529376 -0.10649857059 0.583523502547 36266435 36266560 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36266434;126;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35775533-35775658%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36266435-36266560&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRGLQPPARGSRPPLCVAMAAAAATRTASEGSSAAGA*GGYATMVVR Same 666546 chr19:35775533-35775658+ 71593 71593 -65 5 630 35767600 35790402 970 970;24953;37997;48990;61514;64238;71528 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35767600-35790402&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.785714285714 1.19259259259 -0.645947619048 0.8415 -2.29625238095 1.6503047619 0.0192734802328 0.553971397672 32900 432 432;4773;28957;32900;57014;70882;72541 -8.08555714286 0.4083 -9.40550714286 1.31995 -0.0357167126684 0.516921130802 62013 633 633;9309;48569;62013;62367;64507;71253 0.0 0.00501811180615 chr11:124896198-124896318- ENST00000007510.8,ENST00000378944.9,ENST00000590893.5,ENST00000589133.5 Extension5p,UTR5,NC,NCintron coding exon(s) PROSER3 retained intron CDS 71581 536008 chr2:175442563-175442589+ NoOverlap chr2 175442563 175442589 + 6.15411106745 9 0.87570000763 3.75666673647 2.39744433098 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;175442562;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175442563-175442589%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A175442563-175442589&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0573974605987 -0.107682485072 0.400849541759 176307291 176307317 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;176307290;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175442563-175442589%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A176307291-176307317&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HVDIIKLMKCNCNEQEGAASAAV Same 537371 chr2:175442563-175442589+ 70374 70374 1207 0 2593 175431262 175442589 3667 3667;23940;24312;30353;42328;47431;68426;71581;72593 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:175431262-175442589&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.407407407407 0.0 0.996888888889 1.0 -0.662577777778 1.65946666667 -0.0310868896592 0.358287250552 61202 9400 9400;12533;13565;26288;43072;56059;57986;61202;69104 1.51492222222 0.9357 1.06265555556 0.452266666667 -0.00497930056273 0.328274233629 38003 6205 6205;6835;9148;28284;38003;50257;61246;63121;67251 0.0 0.0 ENST00000438963.1,ENST00000444567.1 NC,NCintron not annotated potentially spurious 71692 593110 chr9:122905217-122905261- NoOverlap chr9 122905217 122905261 - 3.98148004413 15 0.929137102312 1.8562533776 2.12522666653 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;122905216;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905217-122905261-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A122905217-122905261&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0694544464576 -0.110056590435 0.465258110323 125667496 125667540 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;125667495;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A122905217-122905261-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A125667496-125667540&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EEEEAPSRPSPPPTGLSL*LPMEFEVVKPPPSSAPAR Same 594063 chr9:122905217-122905261- 70942 70942 750 6 637 122905081 122905417 981 981;3503;11688;13684;41126;71692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:122905081-122905417&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.577777777778 0.84375 -0.7887 0.9073 -0.169193333333 -0.619506666667 -0.0359785816099 0.230425373272 64280 17978 17978;19658;42486;47356;64280;71470 -2.94533333333 0.3952 0.26772 -3.21305333333 -0.0328351636764 0.237186047537 59653 17127 17127;21574;24738;33390;36324;59653 0.0 0.0 ENST00000357244.6,ENST00000478216.1 UTR5,NC not annotated putative regulatory region 71708 699608 chr4:41745778-41745804+ Extension chr4 41745778 41745804 + 5.15317775144 9 0.522789349203 0.339077631632 4.8141001198 chr4:41745778-41746032+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41745777;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41745778-41745804%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41745778-41745804&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0704513242426 -0.110340056136 0.723670980789 41747795 41747821 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41747794;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41745778-41745804%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41747795-41747821&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") RRRRRRRIPDQNILLFTK Same 700232 chr4:41745778-41745804+ 71011 71011 697 0 2000 41745545 41752242 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.814814814815 1.44642857143 -1.26763333333 0.5967 -5.42906666667 4.16143333333 -0.0173191502197 0.572823754622 52262 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 -0.133322222222 0.5041 -3.9896 3.85627777778 -0.0166263972343 0.465271807867 45516 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0575452052979 chr8:144528761-144528916- ENST00000226382.3 AntiUTR3 not annotated putative regulatory region 71711 549849 chr22:30969549-30969593- NoOverlap chr22 30969549 30969593 - 3.9675066789 15 0.943134711732 1.48067318002 2.48683349888 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30969548;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969549-30969593-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30969549-30969593&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0781564497344 -0.110390444915 0.51308952378 31365535 31365579 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31365534;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969549-30969593-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31365535-31365579&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SGAEQLPAAADHPDDSSSNRKRIGRRPSSAYEK Same 551190 chr22:30969549-30969593- 71123 71123 588 0 396 30968818 30969787 554 554;2215;5416;5709;10618;10639;64375;71711 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968818-30969787&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.72248803828 -1.99568666667 0.7831 -5.51722666667 3.52154 -0.018200218802 0.570121280246 52885 2943 2943;3632;14102;33814;35661;50818;50890;52885 -5.07138 0.3016 -6.70951333333 1.63813333333 -0.0274306524307 0.41752270286 54755 3899 3899;7559;12847;33921;34528;35006;48262;54755 0.0 0.0 under investigation; now made coding Identifies a putative CDS within exonic sequence of lncRNA TUG1. The STOP codon and reading frame are conserved in mammals, although no ATG initiation codon has been found. The 5' NPR terminus falls close to a [CTG] codon that is conserved in mammals, which would demarcate a single exon 153aa CDS [chr22:30969357-30969818]. This translation has now been experimentally confirmed by Lewandowski et al in a manuscript submitted to bioRxiv (https://www.biorxiv.org/content/10.1101/562066v1), and TUG1 will be annotated as a protein-coding gene in GENCODEv32. 71722 514861 chr16:72426363-72426410- NoOverlap chr16 72426363 72426410 - 3.42164378613 16 0.807525558862 0.710350066423 2.71129371971 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72426362;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72426363-72426410-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72426363-72426410&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.101378330941 -0.110598202669 0.558751382175 72460262 72460309 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72460261;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72426363-72426410-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72460262-72460309&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PHTSAFCCNRCPDHPWHGQTGK Same 516511 chr16:72426363-72426410- 70960 70960 762 0 5346 72425674 72429311 7419 7419;20359;21636;23849;24685;27931;29808;67419;67757;69819;71722 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425674-72429311&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.625 0.444444444444 1.54920625 0.9901 0.77269375 0.7765125 0.0266326982556 0.344060643706 30001 9185 9185;30001;30975;34321;44342;61179;63064;63782;69032;69981;73105 -1.94255 0.6443 -1.80386875 -0.13868125 -0.0147921077888 0.358618403885 44158 15117 15117;16880;44158;45925;52647;58331;62919;63425;64625;67483;67573 0.0 0.0 ENST00000561611.2,ENST00000624829.3,ENST00000564508.2 NC,NCintron,AntiNC not annotated potentially spurious 71741 478472 chr10:100866713-100866769+ NoOverlap chr10 100866713 100866769 + 3.24415263534 19 0.923529010211 2.54653662129 0.697616014041 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100866712;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100866713-100866769%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100866713-100866769&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.063626187231 -0.110948533183 0.325453528926 102626470 102626526 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102626469;57;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100866713-100866769%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102626470-102626526&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AHFAGNLLSCFWAAPPAAAARPGCLFQY Same 480367 chr10:100866713-100866769+ 70750 70750 991 0 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.736842105263 0.685096153846 0.977873684211 0.962 1.07687894737 -0.0990052631579 0.00462757462535 0.294108663584 39208 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 -4.93452631579 0.67 -6.59314736842 1.65862105263 -0.0153245812332 0.44530721204 44568 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 71770 518054 chr17:48593271-48593312+ NoOverlap chr17 48593271 48593312 + 3.96952126707 14 0.807202258335 2.66759267875 1.30192858832 ENST00000239151.5 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48593270;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593271-48593312%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48593271-48593312&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0854672856861 -0.111776944912 0.349154740737 46670633 46670674 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46670632;42;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48593271-48593312%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46670633-46670674&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TRWPRLFR*NWRWSWLR Same 519455 chr17:48593271-48593312+ 71012 71012 758 6 1550 48541764 48633940 2307 2307;2569;4168;4831;6375;7912;8628;9418;9452;10461;10617;11225;11956;11991;13549;15578;18244;18528;19021;21370;22205;22533;24462;24613;26034;26726;26874;27447;27523;31595;32918;32989;34338;34542;34553;35570;35637;35858;38762;41693;43295;45299;52359;54492;55305;56320;56582;60140;62577;63184;63269;63812;64588;64755;65906;66646;67348;67509;67627;68674;68748;68850;70971;71389;71770 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48541764-48633940&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.595238095238 1.12 -3.97089285714 0.9926 -4.56539285714 0.5945 -0.0479296987729 0.325438620491 70366 3016 3016;5089;5572;6333;9183;11877;13373;13793;15564;16875;17536;18637;18830;19896;20148;21432;22211;22497;22686;24039;24344;24407;24537;25518;31595;31683;31866;33348;34458;34807;37020;37649;38508;41528;41922;45941;47407;47423;47547;49005;49770;50903;52271;52631;57658;59049;59377;59436;59914;60122;63666;64530;66928;67907;67917;68300;69346;69874;70366;72466;72785;73064;73092;73212;73646 -28.4040214286 0.9235 -22.8771714286 -5.52685 0.0433298968239 0.0663829871879 20179 4119 4119;5134;5724;8461;8953;13559;14562;15565;17935;18609;18735;18876;19312;20179;21792;22319;22420;22899;24247;27679;28480;29821;30545;30777;31633;34535;34639;34773;40448;41397;42081;46267;50635;51043;52501;56732;57297;58132;59717;59798;60017;60108;60208;60334;60463;61334;63115;63398;63720;65145;66333;66362;66657;67813;68459;68569;69233;69627;71238;71264;71546;72445;73546;73604;73692 0.0 0.0 ENST00000429755.8,ENST00000239151.5,ENST00000552000.2 NCintron,AntiCDS,AntiNCintron not annotated putative regulatory region 71771 577673 chr7:27147474-27147500+ NoOverlap chr7 27147474 27147500 + 5.92554448711 9 0.718303196765 3.17868887054 2.74685561657 ENST00000222728.3 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27147473;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147474-27147500%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27147474-27147500&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0857589036209 -0.111786801841 0.450075675196 27187093 27187119 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27187092;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27147474-27147500%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27187093-27187119&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VQVVPGAPLLATARGRGATEVLIR Same 578712 chr7:27147474-27147500+ 71018 71018 753 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.75 -9.59496666667 0.9831 -2.51755555556 -7.07741111111 0.0633524877528 0.0675690327382 20698 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -23.8401666667 0.9213 -18.4904 -5.34976666667 0.0485737997652 0.0782725390058 19024 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000521231.1,ENST00000518848.5,ENST00000222728.3,ENST00000521478.1,ENST00000467897.2 NC,NCintron,AntiCDS,AntiNC,AntiNCintron not annotated putative regulatory region 71875 485673 chr11:85663239-85663277+ NoOverlap chr11 85663239 85663277 + 4.5415615875 13 0.938200961318 3.36789231117 1.17366927633 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;85663238;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663239-85663277%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A85663239-85663277&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0668717839936 -0.114749566231 0.315818162059 85374283 85374321 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;85374282;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A85663239-85663277%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A85374283-85374321&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGFSVQLEPMSSKAMSTLGTEELGTR None NA NA 0 640 85662411 85665175 984 984;2049;2813;3027;18118;20011;21291;24329;58708;71875 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:85662411-85665175&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.538461538462 0.0 2.61664615385 0.9652 0.635307692308 1.98133846154 0.0329048221918 0.418600441185 27666 2447 2447;10858;11498;16615;27666;29218;29965;35821;36919;48364 -0.826507692308 0.3935 -4.6646 3.83809230769 -0.000723430292185 0.499005907407 35731 5807 5807;12876;35731;45741;53410;58313;62812;66127;69825;72999 0.0 0.0 ENST00000527447.1,ENST00000534224.1,ENST00000260058.9 AntiUTR3,AntiCDSintron,AntiNCintron not annotated putative regulatory region 71876 525529 chr18:26549862-26549891- NoOverlap chr18 26549862 26549891 - 5.33626997471 10 0.73558861677 1.80495991707 3.53131005764 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;26549861;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26549862-26549891-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A26549862-26549891&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0895728985931 -0.114783309099 0.57474486758 24129826 24129855 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;24129825;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A26549862-26549891-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A24129826-24129855&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DAPGAWARRGRAFGWKWGSVSYGK Same 526972 chr18:26549862-26549891- 71152 71152 724 0 513 26546760 26549891 768 768;8399;25501;30998;36827;39211;40894;58515;70807;71876 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:26546760-26549891&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 1.17647058824 -0.38842 0.9245 -1.72262 1.3342 -0.04200253088 0.345664052896 67707 2222 2222;11084;12141;14614;15029;28171;62885;67707;71661;73517 -6.7837 0.4091 -6.90564 0.12194 -0.0284772167694 0.319996145528 55735 2942 2942;16429;16512;26392;33196;52681;55735;64991;73449;73633 0.0 0.0912062915859 chr22:30425880-30425946+ ENST00000580191.5,ENST00000317932.11 CDSintron,UTR5intron coding exon(s) KCTD1 5' extension 71888 478475 chr10:100866880-100866948+ NoOverlap chr10 100866880 100866948 + 2.67722177117 23 0.923190064386 1.63540854078 1.04181323038 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;100866879;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100866880-100866948%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A100866880-100866948&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0773809732351 -0.115101725832 0.405574985652 102626637 102626705 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;102626636;69;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A100866880-100866948%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A102626637-102626705&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPGAPRAVIGSRLLEPIKAIESAS Same 480370 chr10:100866880-100866948+ 70974 70974 914 0 1318 100864660 100882989 1983 1983;5671;13145;19687;23389;27299;27629;29532;41392;46019;51735;71033;71741;71888 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:100864660-100882989&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.608695652174 0.638888888889 0.702447826087 0.9988 0.116665217391 0.585782608696 0.0416520494508 0.378314716752 25117 7071 7071;8167;8336;8935;18866;22740;25117;36974;39208;39752;48765;59752;67817;70729 -8.57827391304 0.9061 -8.87259565217 0.29432173913 -0.0401761306724 0.399355266226 65382 5621 5621;11027;15364;26440;27906;44568;47948;55169;57403;58930;64300;65382;67901;73656 0.0 0.0 not annotated putative regulatory region 71891 479640 chr10:129869952-129869981+ NoOverlap chr10 129869952 129869981 + 5.43376996517 10 0.887698176547 1.71138006449 3.72238990068 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129869951;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129869952-129869981%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129869952-129869981&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0829204425679 -0.115139419099 0.5977742008 131668216 131668245 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131668215;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129869952-129869981%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131668216-131668245&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVTFISTANYGK Same 481545 chr10:129869952-129869981+ 70837 70837 1054 0 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.5 0.0 2.80953 0.9811 3.58356 -0.77403 -0.0136635909707 0.172838189312 49643 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 3.66343 0.9304 2.38889 1.27454 0.0349623130875 0.365718555133 22303 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 71906 546232 chr21:8209958-8210251+ NoOverlap chr21 8209958 8210251 + 1.21885713175 98 0.550025613358 1.61386325347 -0.395006121725 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8209957;294;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8209958-8210251%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8209958-8210251&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0193255244842 -0.115323181304 0.355114676137 109405 109698 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;109404;294;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8209958-8210251%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A109405-109698&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APAALVTLDNLGPIARPPWRRRPIRTSALSTFDGSRRAYHGDHG*RGIRVRFRRGSLRNGYHIQGRQQARKLPTPDPGR**RKITIQDSFEAL*LE*VHFKSFNEDPLEGKSGASSR Same 547646 chr21:8209958-8210251+ 44882 44882 27024 63 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.551020408163 0.898395721925 -2.96395 0.2448 -2.17021836735 -0.793731632653 -0.0601881784673 0.273352164629 72506 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -3.27000306122 0.175 -2.54070714286 -0.729295918367 -0.0219942808093 0.47542433123 49775 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 71910 652082 chr17:2400606-2400638+ Extension chr17 2400606 2400638 + 4.9797727005 11 0.84330787851 1.7269181555 3.25285454501 chr17:2400606-2400851+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;2400605;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400606-2400638%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A2400606-2400638&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0812099478395 -0.115463994138 0.55619170444 2303900 2303932 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;2303899;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A2400606-2400638%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A2303900-2303932&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") FPFPSAPGAQPGRSPR Same 652710 chr17:2400606-2400638+ 70850 70850 1060 0 341 2392678 2402115 468 468;9720;11841;13445;13605;15807;18140;18914;22028;22058;22255;30643;34885;44007;65107;68017;68528;71244;71910 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:2392678-2402115&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.818181818182 0.388235294118 1.09156363636 0.9707 0.115627272727 0.975936363636 -0.0244479105172 0.319984693004 57109 5263 5263;9469;13464;14078;16384;16515;18130;18174;24203;38213;46224;47267;50127;57109;62839;64071;66847;69607;72507 -11.2601818182 0.5898 -10.1177181818 -1.14246363636 -0.0270974490018 0.266897839153 54460 4466 4466;7960;10448;17017;17961;22097;24564;28258;38406;42682;51742;54460;55902;55977;59274;61269;61975;62505;64131 0.0 0.0 ENST00000174618.4 AntiCDSintron not annotated putative regulatory region 71913 590040 chr9:120793151-120793186+ NoOverlap chr9 120793151 120793186 + 4.40275821835 12 0.899818163322 0.0499331764877 4.35282504186 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr9;120793150;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A120793151-120793186%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr9%3A120793151-120793186&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.125603724834 -0.115500875691 0.713142874553 123555429 123555464 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr9;123555428;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr9%3A120793151-120793186%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr9%3A123555429-123555464&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PERAPRGPGPRAGFTATR Same 590987 chr9:120793151-120793186+ 71084 71084 829 0 936 120793125 120799627 1441 1441;36018;70340;71913 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9:120793125-120799627&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.888888888889 0.988235294118 3.87250833333 0.979 -1.83403333333 5.70654166667 0.136684157637 0.724292208785 12540 1543 1543;12540;63676;71284 -1.68173333333 0.4017 -6.85879166667 5.17705833333 -0.00249800107268 0.545585622382 36619 1127 1127;24341;36619;41840 0.0 0.0 ENST00000453291.1,ENST00000474117.1 AntiUTR5,AntiNC protein-coding gene protein-coding gene ENSG00000214654; found after looking at high-scoring intergenic PCCRs 71945 469590 chr1:244272868-244272921+ NoOverlap chr1 244272868 244272921 + 3.23543341623 18 0.889815450607 1.51914994584 1.71628347039 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244272867;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244272868-244272921%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244272868-244272921&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0870067101217 -0.116235693586 0.448249395453 244436170 244436223 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244436169;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244272868-244272921%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244436170-244436223&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGTGQMNNVG*AAGPSPDLVPPK Same 471471 chr1:244272868-244272921+ 71075 71075 870 7 1112 244272482 244272921 1692 1692;4751;38141;71945 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244272482-244272921&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.25 -3.52327222222 0.9769 -3.66497222222 0.1417 -0.0573796956501 0.307695490071 72255 10628 10628;10917;36623;72255 -10.9233444444 0.5073 -11.4115055556 0.488161111111 -0.0420649012123 0.36725190958 66715 11898 11898;16363;44560;66715 0.0 0.0 not annotated putative regulatory region 71968 517997 chr17:48294084-48294110+ NoOverlap chr17 48294084 48294110 + 6.14468887117 9 0.938200961318 4.18885551559 1.95583335559 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;48294083;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48294084-48294110%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A48294084-48294110&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0681617702974 -0.11681837727 0.34475013988 46371446 46371472 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;46371445;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A48294084-48294110%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A46371446-46371472&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPGLWGCIHLLVTLQASCHTYRITICFLNK Same 519398 chr17:48294084-48294110+ 71207 71207 761 0 1043 48294084 48294260 1593 1593;71968 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:48294084-48294260&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.0 2.73585555556 1.0 -0.367222222222 3.10307777778 0.0118307733872 0.474006831974 36014 7669 7669;36014 -4.33166666667 0.9107 -7.21491111111 2.88324444444 -0.0428606963402 0.423210437313 67311 5612 5612;67311 0.0 0.0 ENST00000336915.10,ENST00000581400.2 AntiCDSintron,AntiNCintron not annotated putative regulatory region 72018 572444 chr6:108157665-108157802+ NoOverlap chr6 108157665 108157802 + 2.08243268728 46 0.591474187374 2.55567178227 -0.473239094991 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr6;108157664;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108157665-108157802%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr6%3A108157665-108157802&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.025698351496 -0.118179501795 0.326185647609 108478869 108479006 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr6;108478868;138;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr6%3A108157665-108157802%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr6%3A108478869-108479006&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EIDFCLEFVKSGARGPVNGAPRGAG*VELARTAQPRPQLIRPLCGPPGRPRR Same 573471 chr6:108157665-108157802+ 71637 71637 381 20 659 108157665 108177636 1015 1015;4402;6301;6408;8780;8864;13268;14238;15978;17970;24418;41655;49945;72018 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6:108157665-108177636&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.731884057971 0.974117647059 -1.55113913043 0.9399 -0.94032173913 -0.610817391304 -0.0421286532096 0.336971376028 67783 1298 1298;5179;9613;11848;13992;15192;17538;21949;26589;29220;33219;66030;67125;67783 -6.95755869565 0.8749 -9.10099782609 2.14343913043 0.0314276206922 0.566180131854 23332 4406 4406;6446;7685;13045;17128;19799;23332;24072;38625;39701;42480;56884;58721;59593 0.0 0.0 ENST00000441184.1,ENST00000440575.6,ENST00000492070.1 NC,AntiUTR5intron,AntiNCintron not annotated putative regulatory region 72031 657206 chr17:7909339-7909383- Extension chr17 7909339 7909383 - 3.12491341432 15 0.719295033188 -1.0635132432 4.18842665752 chr17:7909318-7909383- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7909338;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7909339-7909383-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7909339-7909383&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.152215206997 -0.118569187548 0.736789736823 7812657 7812701 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7812656;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7909339-7909383-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7812657-7812701&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LTQRCGPSPARGRRGPYPCAGR Different 521721 chr17:7909318-7909383- 26545 26545 45486 0 320 7909339 7916216 436 436;1938;4281;5688;13182;72031;73071;73673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7909339-7916216&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.822222222222 0.9375 1.92582666667 0.9248 -0.567773333333 2.4936 0.028993057147 0.483912463717 29084 349 349;1564;1761;1828;15031;19061;29084;43318 -6.63960666667 0.6569 -20.1089533333 13.4693466667 0.0917137817229 0.869472864914 12386 2836 2836;3263;3677;4021;11908;12386;65199;71655 0.0 0.0 ENST00000439235.5,ENST00000330494.11,ENST00000470531.5 AntiCDS,AntiCDSintron,AntiNCintron protein-coding gene protein-coding gene ENSG00000179859 72036 586882 chr8:64377334-64377378- NoOverlap chr8 64377334 64377378 - 3.66790668567 15 0.811544975967 1.92006678581 1.74783989986 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;64377333;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64377334-64377378-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A64377334-64377378&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0958053684127 -0.118694972209 0.419766557066 65289891 65289935 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;65289890;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A64377334-64377378-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A65289891-65289935&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") WEVGVGRGWVGAVRSFPLAC Same 587823 chr8:64377334-64377378- 71268 71268 768 0 5341 64368369 64380096 7413 7413;23157;28942;34300;70170;70979;72036 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:64368369-64380096&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.733333333333 0.557851239669 -1.08621333333 0.9813 -2.15264666667 1.06643333333 -0.0327355130921 0.363122029431 62241 9455 9455;23665;25300;33558;51744;54451;62241 -4.09975333333 0.6222 -6.37671333333 2.27696 -0.0171782279239 0.445658179212 45945 29002 29002;44391;44674;45945;47356;48925;63213 0.0 0.0 ENST00000524060.1,ENST00000520799.5 AntiNC,AntiNCintron not annotated potentially spurious 72084 533869 chr2:66698192-66698275+ NoOverlap chr2 66698192 66698275 + 2.13359997102 28 0.945998321508 0.574935667217 1.55866430381 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;66698191;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A66698192-66698275%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A66698192-66698275&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.117542977344 -0.120023081138 0.513316215386 66925324 66925407 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;66925323;84;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A66698192-66698275%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A66925324-66925407&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QFIKLCHIK*NFNFSSIRVAMKAIEEDEPYGTSISK Same 535253 chr2:66698192-66698275+ 71228 71228 856 10 4061 66695564 66700411 5616 5616;19561;59741;72084 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:66695564-66700411&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.369047619048 0.35 -1.41807857143 1.0 -0.853482142857 -0.564596428571 -0.0374285038112 0.298009854369 65088 13483 13483;24924;65088;65347 -3.31112857143 0.7103 -2.93516071429 -0.375967857143 0.00169549197649 0.414340040679 34537 27624 27624;34537;43215;50700 0.0 0.0 ENST00000412944.1,ENST00000432410.5 NCintron,AntiNCintron not annotated potentially spurious 72107 473181 chr1:90835125-90835220- NoOverlap chr1 90835125 90835220 - 1.69149687327 32 0.912721732662 -0.339987525716 2.03148439899 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;90835124;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835125-90835220-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A90835125-90835220&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.16804995022 -0.120745858165 0.603554862325 91300682 91300777 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;91300681;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A90835125-90835220-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A91300682-91300777&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAQSDRVNANYKLVPIFPPGD*TSHSNCFIHCDCK Same 475060 chr1:90835125-90835220- 71202 71202 905 12 2174 90832085 90840997 3119 3119;9721;9916;19409;26602;27284;46098;49682;49809;52951;65936;67562;69423;72107 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:90832085-90840997&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.479166666667 0.553846153846 -0.260984375 1.0 -1.083475 0.822490625 0.0425408560956 0.444655023592 24864 13380 13380;16613;20366;23052;24241;24864;34738;46543;53824;64265;64378;65116;66198;71211 -9.145309375 0.9306 -14.467078125 5.32176875 0.0161840514371 0.646373182307 28318 9186 9186;22153;24947;28318;34431;41455;47783;47792;55053;64903;66713;68327;70462;72992 0.0 0.0 ENST00000435649.2 NCintron not annotated putative regulatory region 72133 558848 chr4:41748901-41748954+ NoOverlap chr4 41748901 41748954 + 3.28872763779 18 0.916030450226 2.6723221706 0.616405467192 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41748900;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748901-41748954%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41748901-41748954&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0853026807981 -0.121883155781 0.307048093522 41750918 41750971 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41750917;54;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41748901-41748954%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41750918-41750971&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLGWHWGTELSNLPIIDSCISN None NA NA 0 2000 41745545 41752242 2903 2903;3095;18502;19158;20538;61135;62730;64470;64795;68464;71708;72133 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41745545-41752242&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.555555555556 0.0 0.390705555556 1.0 -0.154738888889 0.545444444444 0.00755506807226 0.340482620265 37863 4434 4434;5295;6861;15582;34537;37863;41091;42787;50122;52262;58779;69096 -2.25725555556 0.9146 -2.62833333333 0.371077777778 -0.00385310114842 0.39181398818 37343 4750 4750;11012;22009;25193;36745;37343;45516;50024;50766;53093;70270;70799 0.0 0.0 ENST00000508038.1,ENST00000226382.3 NCintron,AntiUTR5 not annotated putative regulatory region 72181 577717 chr7:27179873-27179908+ NoOverlap chr7 27179873 27179908 + 4.60388334095 12 0.989192797742 0.591758206487 4.01212513447 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27179872;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27179873-27179908%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27179873-27179908&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.128688808142 -0.123445463011 0.669422039217 27219492 27219527 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27219491;36;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27179873-27179908%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27219492-27219527&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPGGFDIDRKCAISWR Same 578756 chr7:27179873-27179908+ 71940 71940 241 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.638888888889 1.09090909091 3.09015833333 1.0 1.43465 1.65550833333 0.0487522988348 0.37932225211 23452 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -4.65526666667 0.649 -4.17116666667 -0.4841 -0.0406306886841 0.315270038986 65698 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000396344.4 AntiUTR5 not annotated putative regulatory region 72262 505124 chr14:93927189-93927302- NoOverlap chr14 93927189 93927302 - 1.52068944668 38 0.790621724832 0.18514209672 1.33554734995 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;93927188;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A93927189-93927302-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A93927189-93927302&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.150620750288 -0.126470733497 0.540631193559 94393535 94393648 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;94393534;114;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A93927189-93927302-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A94393535-94393648&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LEAVVQPLSGLNGGQLPGAGGPLRPIRSASPDTKHPNQAAAPRSHILCRHKLSPWGPSQK Same 506971 chr14:93927189-93927302- 71804 71804 458 0 3263 93926359 93927414 4529 4529;5519;7892;32325;72262 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:93926359-93927414&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.614035087719 0.57527333894 1.24083157895 0.9733 0.201334210526 1.03949736842 0.136234839117 0.503430164386 12586 8144 8144;12586;16200;29537;58582 -5.53202368421 0.8728 -8.18376842105 2.65174473684 0.0429895922083 0.574643216621 20263 8416 8416;20263;26837;36661;44192 0.0 0.0 ENST00000556222.1,ENST00000267594.5,ENST00000557719.1 AntiUTR5,AntiCDSintron,AntiUTR5intron not annotated potentially spurious 72264 530969 chr19:35784826-35784855- NoOverlap chr19 35784826 35784855 - 5.1971000582 10 0.742861066606 2.58865011334 2.60844994485 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;35784825;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35784826-35784855-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A35784826-35784855&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.103138002425 -0.126502078455 0.45665589027 36275728 36275757 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;36275727;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A35784826-35784855-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A36275728-36275757&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGSCQLWGRPRPQAKPSATAQAPAPQHAHPGWQGRGPGR Same 532436 chr19:35784826-35784855- 71500 71500 764 0 212 35784826 35806955 260 260;1121;1194;1213;1321;1423;1493;1850;1906;3904;15940;50643;72264 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:35784826-35806955&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.833333333333 0.38961038961 2.9427 0.9643 3.08188 -0.13918 -0.0142341577697 0.217421778048 50058 318 318;835;1172;1295;1338;1509;1839;2132;2487;2866;3259;4404;50058 -2.38516 0.5075 -4.34697 1.96181 -0.0315564924312 0.397069817566 58525 2002 2002;2447;2687;2690;2722;2824;3098;3649;4582;4655;7733;8191;58525 0.0 0.0 ENST00000593034.5,ENST00000007510.8 AntiNC,AntiCDSintron pseudogene protein tyrosine kinase family pseudogene (ENSG00000225872) 72305 557655 chr3:181535097-181535141- NoOverlap chr3 181535097 181535141 - 3.50676665306 15 0.900007629511 -0.133660030365 3.64042668343 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr3;181535096;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A181535097-181535141-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr3%3A181535097-181535141&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.148036993299 -0.128045802253 0.667104852277 181252885 181252929 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr3;181252884;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr3%3A181535097-181535141-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr3%3A181252885-181252929&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SLETLSFSLPMCLLPDCEWI*KGMVSAENWIR Same 558626 chr3:181535097-181535141- 71545 71545 760 3 19289 181534923 181535146 35860 35860;46264;72305 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3:181534923-181535146&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.466666666667 0.0 -2.36205333333 1.0 -0.602273333333 -1.75978 -0.0432341237215 0.157403889251 68340 10762 10762;35565;68340 -5.31473333333 0.8365 -3.60465333333 -1.71008 -0.0424493563903 0.288226091153 66978 8328 8328;26388;66978 0.0 0.0 ENST00000470817.1,ENST00000460739.5 NCintron,AntiNCintron not annotated potentially spurious 72331 476462 chr1:244055436-244055468- NoOverlap chr1 244055436 244055468 - 5.11948182366 11 0.947905699245 3.02828176455 2.09120005911 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;244055435;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244055436-244055468-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A244055436-244055468&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0852135404209 -0.128807896031 0.4024351348 244218738 244218770 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;244218737;33;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A244055436-244055468-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A244218738-244218770&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QVNIPTFYFQETRLLLDRTTTI Same 478356 chr1:244055436-244055468- 71634 71634 697 0 634 244048122 244055468 977 977;8012;9283;13306;16285;29159;32052;32533;32799;37070;39798;44234;47376;48053;49374;51346;52105;54418;66801;72331 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:244048122-244055468&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.454545454545 0.611111111111 -0.8056 0.9932 -0.590872727273 -0.214727272727 -0.0389839473158 0.235428449001 65990 3989 3989;6792;7829;14344;19092;21413;24171;27546;29977;31250;32803;38562;42780;45127;46897;47494;49667;53949;65990;71897 -11.1966545455 0.8185 -11.1479181818 -0.0487363636364 -0.0407882585136 0.304522935677 65819 8183 8183;9756;10209;11245;13146;13198;17112;19990;20268;23640;23669;26945;28780;43336;43775;45576;49139;63151;65819;68304 0.0 0.04463775636 chr19:57128676-57131444+ ENST00000358704.4 AntiUTR3 not annotated putative regulatory region 72347 509992 chr15:95454977-95455015- NoOverlap chr15 95454977 95455015 - 4.21728468858 13 0.869596398871 2.89586914961 1.32141553897 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr15;95454976;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95454977-95455015-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr15%3A95454977-95455015&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0990606655036 -0.129744128247 0.338593363284 95998206 95998244 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr15;95998205;39;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr15%3A95454977-95455015-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr15%3A95998206-95998244&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSLESPIIRDRKLCLQRKVIIHFFQSINIFCLFGST Same 511727 chr15:95454977-95455015- 71486 71486 861 0 5012 95454977 95464832 6935 6935;26656;62257;72347 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15:95454977-95464832&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.487179487179 0.443181818182 -2.83260769231 1.0 -3.75608461538 0.923476923077 -0.0466373200759 0.341772716663 69892 30292 30292;68270;69892;73588 -8.11874615385 0.7758 -6.50232307692 -1.61642307692 -0.0442900513459 0.273430356267 68290 17131 17131;65875;68290;73140 0.0 0.0 ENST00000554837.5 AntiNCintron not annotated potentially spurious 72432 672044 chr19:50790357-50790413- Extension chr19 50790357 50790413 - 2.61845270113 19 0.774858753659 1.63664738442 0.981805316712 chr19:50790357-50790428- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;50790356;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A50790357-50790413-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A50790357-50790413&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.151292631185 -0.133736800631 0.368345067843 51293614 51293670 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;51293613;57;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A50790357-50790413-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A51293614-51293670&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GPAGWPQNPRPAISTQPRR*AQPTVWAAAPPVPALHSAPPL Same 672640 chr19:50790357-50790413- 71884 71884 548 7 1690 50785936 50790413 2506 2506;17846;72432 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:50785936-50790413&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.719298245614 0.452380952381 3.59455789474 0.8928 -3.69841052632 7.29296842105 0.257448580603 0.905765378899 6730 1481 1481;2734;6730 3.83941052632 0.37 -6.71419473684 10.5536052632 0.233580435026 0.817550821682 5486 4002 4002;5486;5677 0.0 0.0377018808371 chr11:47248804-47248864+ protein-coding gene protein coding gene ENSG00000261341 72433 577657 chr7:27141245-27141277+ NoOverlap chr7 27141245 27141277 + 5.00472745028 11 0.996146403379 1.36299993504 3.64172751524 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr7;27141244;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27141245-27141277%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr7%3A27141245-27141277&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.121440423852 -0.133786696203 0.605989513832 27180864 27180896 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr7;27180863;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr7%3A27141245-27141277%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr7%3A27180864-27180896&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VRAKGPIKARRDTPLGVTVFITESLVTTR Same 578696 chr7:27141245-27141277+ 72074 72074 359 0 1628 27130527 27185948 2422 2422;2515;2733;2751;2889;3592;4029;4298;5322;5508;8309;9523;12005;12078;12850;12866;14247;14877;15422;15600;15830;16962;19027;19868;20397;20711;21586;22048;23393;23504;24438;24529;25197;25269;26371;26383;27488;28106;29705;32588;34569;36023;37275;38839;41742;42077;42191;45226;48815;54810;57003;58923;62218;64475;66589;67420;69971;70006;70008;70238;71771;72181;72433 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7:27130527-27185948&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.575757575758 0.75 0.202836363636 0.9994 -0.756827272727 0.959663636364 -0.0287857004423 0.321612644075 59775 2757 2757;6419;7466;7469;8040;10221;10885;13423;13621;13677;13977;15731;16188;17607;19418;19545;19647;19834;20542;20591;20691;20698;21117;21603;22756;23452;23526;26961;28298;28775;29841;30183;35211;35835;37407;37505;37568;39239;39565;41464;41701;42758;43500;49564;50368;53853;59775;63330;65510;67718;68716;68767;68835;70998;71555;71559;71736;72750;73132;73183;73269;73675;73782 -6.5966 0.7611 -7.26289090909 0.666290909091 -0.0465066835533 0.347692297218 69658 3846 3846;4281;9630;11179;13168;13643;15783;16761;18433;18984;19024;22358;23005;23706;23747;24449;26713;28278;28320;31573;31942;34191;35178;35358;36370;36811;36863;38839;38844;39016;42069;42974;43523;45613;45784;49893;50076;51282;51615;54061;57753;59145;60878;61819;62130;64632;64635;64695;64983;65338;65490;65698;67036;69051;69605;69658;69740;69841;70368;71341;72704;73492;73675 0.0 0.0 ENST00000518848.5,ENST00000222726.3,ENST00000467897.2 NCintron,AntiUTR3,AntiNCintron not annotated putative regulatory region 72442 535640 chr2:163348491-163348520+ NoOverlap chr2 163348491 163348520 + 5.3910800457 10 0.912240787366 3.56327009201 1.82780995369 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;163348490;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A163348491-163348520%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A163348491-163348520&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0935244868995 -0.134225656914 0.352972795755 164205001 164205030 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;164205000;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A163348491-163348520%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A164205001-164205030&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AAGTEMTVAGPATAAASALTAAPDPSAVSSLILASAFSSSSFFPTPAAPLVK Same 537003 chr2:163348491-163348520+ 71617 71617 825 0 1222 163348314 163348757 1845 1845;57864;72442 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:163348314-163348757&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.666666666667 0.357142857143 4.39034 0.9066 4.81111 -0.42077 -0.0109728829892 0.190177454299 47745 2837 2837;30400;47745 -0.30057 0.3744 4.2286 -4.52917 -0.0251809229334 0.16337917173 52692 5420 5420;52692;53343 0.0 0.0 not annotated putative regulatory region 72482 636642 chr14:74552396-74552425+ Extension chr14 74552396 74552425 + 1.12076001763 10 0.612426947433 -0.215660178661 1.33642019629 chr14:74552297-74552425+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;74552395;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A74552396-74552425%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A74552396-74552425&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.159728410931 -0.136236731935 0.366406801472 75019099 75019128 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;75019098;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A74552396-74552425%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A75019099-75019128&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SATSTLKVTSGGR Same 637289 chr14:74552396-74552425+ 72089 72089 393 0 26893 74552396 74552425 Best 72482 72482 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:74552396-74552425&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.533333333333 0.5 -6.59546 0.9128 -8.56583 1.97037 0.00569180555541 0.426230680416 38740 Best 38740 38740 -13.81774 0.5612 -18.69074 4.873 -0.0335053907607 0.455006873093 60213 Best 60213 60213 0.0 0.0 ENST00000554552.1,ENST00000261978.8,ENST00000553939.5 NC,AntiCDSintron,AntiNCintron not annotated potentially spurious 72525 478899 chr10:113119187-113119237+ NoOverlap chr10 113119187 113119237 + 3.24040012763 17 0.904640089041 1.12717638997 2.11322373765 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;113119186;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119187-113119237%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A113119187-113119237&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.126666068409 -0.138336765281 0.491503325597 114878946 114878996 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;114878945;51;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A113119187-113119237%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A114878946-114878996&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IDTSR*ASGR*ERWNIWESS Same 480800 chr10:113119187-113119237+ 71758 71758 767 10 339 113118930 113129936 464 464;1835;6195;19141;29079;34837;35212;35252;36320;47523;57374;65649;66439;67770;67864;69080;70873;71191;72525 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:113118930-113129936&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.529411764706 0.6 -3.38928823529 0.9983 -5.2725 1.88321176471 -0.0506322772944 0.443010944297 71119 755 755;7197;9466;18040;34516;35455;35756;37467;38152;38928;41627;42393;44546;44606;50976;63183;63701;64584;71119 -11.1966647059 0.922 -15.7236176471 4.52695294118 -0.0415553544056 0.514632682278 66369 2269 2269;6881;10596;21425;21490;24668;27747;28601;31210;40834;43605;44584;47908;59473;65257;65581;66369;67874;71314 0.0 0.0 ENST00000346198.5 CDSintron redundant PhyloCSF signals are accounted for elsewhere on the list 72550 482358 chr10:117542879-117542914- NoOverlap chr10 117542879 117542914 - 4.23947503852 12 0.836750082653 0.499183257421 3.7402917811 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117542878;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542879-117542914-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117542879-117542914&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.135223512622 -0.139154000809 0.640137588242 119302390 119302425 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119302389;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117542879-117542914-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119302390-119302425&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ILPEEFAGVDWGNFFSFFFFFFLFFFFFFFWRDGVGGSELEAGR Same 484285 chr10:117542879-117542914- 71711 71711 839 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.638888888889 1.42105263158 2.73138333333 0.8449 -1.88044166667 4.611825 0.0234222691819 0.636687858453 31238 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -2.10539166667 0.4861 -8.48540833333 6.38001666667 0.0124313973015 0.59477284349 29764 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000551288.5,ENST00000442245.5 NCintron,AntiUTR5 not annotated putative regulatory region 72566 490801 chr12:16786700-16786822+ NoOverlap chr12 16786700 16786822 + 1.77209760939 41 0.863399375124 1.55676587326 0.215331736134 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr12;16786699;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A16786700-16786822%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr12%3A16786700-16786822&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0470541433367 -0.139765185332 0.400288094561 16939634 16939756 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr12;16939633;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr12%3A16786700-16786822%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr12%3A16939634-16939756&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LLCAVNIEQQPSPDDPCCIQFLPKCFLLNLHQTDTRRTKENLITKGN Same 492777 chr12:16786700-16786822+ 71865 71865 701 0 26901 16786700 16786822 Best 72566 72566 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12:16786700-16786822&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.463414634146 0.525641025641 -1.36883170732 0.991 -2.80026097561 1.43142926829 0.0277458148733 0.520252330263 29585 Best 29585 29585 -4.3438804878 0.8462 -7.56917804878 3.22529756098 0.0833132180926 0.612518858504 13351 Best 13351 13351 0.0 0.0 ENST00000539266.2 NC not annotated putative regulatory region 72567 524455 chr18:47594835-47594957+ NoOverlap chr18 47594835 47594957 + 1.48274393321 41 0.671600168966 0.90345123969 0.579292693516 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;47594834;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47594835-47594957%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A47594835-47594957&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.149071495155 -0.13978083671 0.449754358263 45121206 45121328 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;45121205;123;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A47594835-47594957%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A45121206-45121328&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QHPPGAQREHFLDFTLGYICLTRHLPKQRLMTAQTSHSGENTHACSHTHALAR Same 525891 chr18:47594835-47594957+ 72149 72149 418 0 9000 47594360 47602035 13245 13245;26978;27676;41264;47167;69881;72567 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:47594360-47602035&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.463414634146 0.786445012788 0.427146341463 0.9537 -2.2205902439 2.64773658537 0.15434701671 0.658999342732 11265 6593 6593;11265;14639;28210;30783;58565;63900 -3.66142439024 0.7908 -5.8538902439 2.19246585366 0.0741265723417 0.569780367507 14557 7430 7430;14557;25346;33451;40777;53603;69649 0.0 0.0 not annotated potentially spurious 72574 667373 chr19:49832416-49832445+ Extension chr19 49832416 49832445 + 2.00957995057 10 0.416879530022 -5.3952598393 7.40483978987 chr19:49832302-49832445+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;49832415;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49832416-49832445%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A49832416-49832445&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") 0.11496925514 -0.140280027922 0.976991536775 50335673 50335702 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;50335672;30;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A49832416-49832445%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A50335673-50335702&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") IMGNGFVSPGHGGPRGVDSCPAFC Same 667981 chr19:49832416-49832445+ 69795 69795 2779 0 446 49832416 49838821 638 638;72574 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:49832416-49838821&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.352941176471 -4.40267 0.6777 -13.77553 9.37286 0.00167459614307 0.92664155728 40661 1084 1084;40661 -7.26812 0.4407 -14.26221 6.99409 -0.0293286767471 0.5854475684 56501 2445 2445;56501 0.0 0.0721555471635 chr11:2164233-2164392- ENST00000312865.10,ENST00000595185.5 ExtensionMid,CDSintron coding exon(s) MED25 alternative final exon had frame corrected 72593 536003 chr2:175441493-175441552+ NoOverlap chr2 175441493 175441552 + 2.6572800681 20 0.973154039826 -0.360105001926 3.01738507003 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr2;175441492;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441493-175441552%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr2%3A175441493-175441552&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.189800125771 -0.14125830734 0.641847540046 176306221 176306280 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr2;176306220;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr2%3A175441493-175441552%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr2%3A176306221-176306280&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CCCQMCLVHQISWSLQPGSELLTD Same 537366 chr2:175441493-175441552+ 72062 72062 531 0 2593 175431262 175442589 3667 3667;23940;24312;30353;42328;47431;68426;71581;72593 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2:175431262-175442589&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.516666666667 0.25 -1.11514 1.0 -3.11865 2.00351 -0.00302832187602 0.477748429431 43072 9400 9400;12533;13565;26288;43072;56059;57986;61202;69104 -4.75915 0.9116 -4.816705 0.057555 -0.0225347294186 0.38694414637 50257 6205 6205;6835;9148;28284;38003;50257;61246;63121;67251 0.0 0.0 ENST00000438963.1 NCintron not annotated potentially spurious 72617 482344 chr10:117534647-117534691- NoOverlap chr10 117534647 117534691 - 3.31199338436 15 0.781204954096 1.66640005112 1.64559333324 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;117534646;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117534647-117534691-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A117534647-117534691&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.14720226428 -0.142720366786 0.411120831177 119294158 119294202 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;119294157;45;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A117534647-117534691-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A119294158-119294202&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LAPAASSLPGAACATKGGIAAARTGTALIQY Same 484271 chr10:117534647-117534691- 71933 71933 684 0 852 117534530 117554766 1320 1320;1749;2601;4935;6103;9274;9874;11912;13459;13970;15160;18460;18685;24536;27659;29405;31104;31910;36523;43479;47686;50208;70861;72550;72617 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:117534530-117554766&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 1.04166666667 4.14434666667 0.926 2.09599333333 2.04835333333 0.0858280377766 0.44016250327 17513 9545 9545;9817;10146;10795;11524;11783;13777;17110;17513;20183;22156;28814;29922;31238;46442;51268;54713;56350;63221;65896;69341;69617;70726;71610;73660 -0.982606666667 0.365 -3.08765333333 2.10504666667 -0.00797642311499 0.44284477691 39729 9331 9331;9923;11754;13015;15779;16617;24261;29656;29764;29786;38813;39729;44513;47171;49621;60324;61500;63615;64433;67032;69052;71052;71420;71988;73138 0.0 0.0 ENST00000440007.5 NCintron not annotated putative regulatory region 72621 615681 chr10:75401420-75401503- Extension chr10 75401420 75401503 - 1.88977142849 28 0.778720749 1.64935359465 0.240417833839 chr10:75401105-75401503- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;75401419;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401420-75401503-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A75401420-75401503&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.146571760408 -0.142927189276 0.341275085741 77161178 77161261 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;77161177;84;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A75401420-75401503-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A77161178-77161261&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") CSCSRGERAAPSPPRASRSPPPRCSHARGWVMSTAPSLSALR Same 616390 chr10:75401420-75401503- 72096 72096 525 0 3027 75401238 75417825 4228 4228;6685;19248;23964;26231;42519;58489;66465;71052;72621 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:75401238-75417825&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.845238095238 0.906976744186 -3.76800357143 0.8214 -4.69017857143 0.922175 -0.0614739042316 0.408536567368 72593 9680 9680;11699;11870;23869;27311;40902;43730;53944;63556;72593 -11.1848821429 0.6217 -10.920475 -0.264407142857 -0.0557016563602 0.387403796639 72930 8483 8483;11906;14750;22472;22714;29979;35309;42843;42916;72930 0.0 0.0870047118094 chr16:2114170-2114925- ENST00000372524.4 Extension5p not annotated putative regulatory region 72692 652526 chr17:7420340-7420384+ Extension chr17 7420340 7420384 + 3.06727324327 15 0.722563515679 0.724580015739 2.34269322753 chr17:7420340-7420390+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7420339;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7420340-7420384%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7420340-7420384&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.160798286734 -0.147205648618 0.505095398137 7323659 7323703 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7323658;45;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7420340-7420384%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7323659-7323703&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") QSVDTVGTVGWGRKGPGGPRDPMAMVERPRPEWASYHNCNSNSCQDLGNSVLLLLGLIICINISINIVTLVR Same 653155 chr17:7420340-7420384+ 72064 72064 628 0 708 7420340 7438334 1096 1096;1905;1920;2283;5350;13988;14787;48569;72692 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7420340-7438334&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.755555555556 0.494505494505 0.392946666667 0.9787 -3.68261333333 4.07556 0.0337084887038 0.621793097303 27391 1008 1008;1355;2074;2394;2819;5308;13112;27391;64992 -2.85378666667 0.4278 -9.54958 6.69579333333 0.0275561994992 0.631346879993 24490 3602 3602;3907;7062;7245;8899;17053;24490;30052;59755 0.0 0.0 ENST00000323675.3,ENST00000575310.1 Extension5p,NCintron protein-coding gene protein-coding gene ENSG00000283439 72732 561545 chr4:41874098-41874193- NoOverlap chr4 41874098 41874193 - 1.85636560805 32 0.861044670787 1.53321866784 0.323146940209 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;41874097;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41874098-41874193-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A41874098-41874193&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.111543378575 -0.150440712632 0.373754685301 41876115 41876210 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;41876114;96;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A41874098-41874193-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A41876115-41876210&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LPGVLILPLPVHLCPEGPFQMDTNCGGCTLLAAPMPQGPRTCFSKP Same 562536 chr4:41874098-41874193- 72003 72003 729 0 3613 41857345 41882783 5013 5013;7578;19129;24071;27845;27914;30805;30847;31018;31190;37042;37460;38301;63786;70625;72732 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:41857345-41882783&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.59375 0.237037037037 0.429365625 0.9992 -1.125990625 1.55535625 0.0997921855282 0.518043426598 15864 9981 9981;12389;14687;15864;20130;23856;29140;44549;48017;56504;59319;63140;64506;67424;70445;70588 -2.634059375 0.8915 -4.688734375 2.054675 0.062431353478 0.53678864341 16409 12173 12173;13702;13801;16409;33351;41489;42046;45036;45070;52324;62284;62289;69350;69557;69989;71680 0.0 0.0 not annotated putative regulatory region 72744 512284 chr16:72425686-72425724+ NoOverlap chr16 72425686 72425724 + 4.12190000827 13 0.916922842169 1.63070007471 2.49119993357 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr16;72425685;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425686-72425724%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr16%3A72425686-72425724&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.129675903448 -0.150875549898 0.490963538438 72459585 72459623 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr16;72459584;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr16%3A72425686-72425724%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr16%3A72459585-72459623&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VCQAAGVCTLWEK Same 513928 chr16:72425686-72425724+ 71964 71964 780 0 1711 72425643 72428006 2536 2536;2915;3908;7278;11431;15779;16856;23798;50261;57807;61040;68935;69194;72744 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16:72425643-72428006&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.615384615385 0.577777777778 1.43727692308 1.0 0.750307692308 0.686969230769 0.00427371086377 0.312358219426 39371 11393 11393;16031;18227;20251;25936;31291;33365;33993;35220;39371;47336;53607;63326;64613 -10.8795307692 0.788 -6.06506923077 -4.81446153846 -0.0257859487686 0.163750595845 53263 19582 19582;28400;33741;40556;41659;47621;52119;53263;54104;54823;55348;60519;70367;73318 0.0 0.0 ENST00000561611.2,ENST00000624829.3 AntiNC,AntiNCintron not annotated potentially spurious 72805 724189 chr8:144466519-144466545+ Extension chr8 144466519 144466545 + 3.85906663206 9 0.516743385638 -0.701400074694 4.56046670675 chr8:144466408-144466545+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr8;144466518;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144466519-144466545%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr8%3A144466519-144466545&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0645938408855 -0.155231512463 0.711756018506 145691902 145691928 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr8;145691901;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr8%3A144466519-144466545%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr8%3A145691902-145691928&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DGGAAAAAEPGDPAQVSGAGRAAR Same 724787 chr8:144466519-144466545+ 72010 72010 795 0 455 144462230 144473371 652 652;52414;53196;56283;57650;72805 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8:144462230-144473371&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.777777777778 0.778846153846 -4.47431111111 0.6808 -10.8404111111 6.3661 -0.00469746524923 0.740641172373 43967 886 886;41693;42652;43967;45511;56412 -7.26883333333 0.3535 -13.1904 5.92156666667 -0.0259769968067 0.534598873372 53436 1535 1535;18941;28339;51248;53436;61641 0.0 0.0596806747912 chr7:73769387-73770049- ENST00000301332.2 ExtensionMid coding exon(s) KIFC2 frame corrected in final exon 72851 546231 chr21:8209936-8210082+ NoOverlap chr21 8209936 8210082 + 1.17768571815 49 0.554658283547 1.90862243394 -0.730936715798 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr21;8209935;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8209936-8210082%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr21%3A8209936-8210082&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.14973594996 -0.159524060708 0.300162917547 109383 109529 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr21;109382;147;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr21%3A8209936-8210082%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr21%3A109383-109529&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PRADRTPPVAATTHSNVCPINFRW*SPCLPW*PRVTGNQGSIPEREPEKR None NA NA 25 973 8209806 8218947 1489 1489;6070;19580;21020;21825;22277;25676;31237;31699;33906;34026;35295;43490;44019;44449;47593;49525;49554;50631;52845;53195;54064;54433;54873;54922;56774;59486;60040;61083;62647;64390;64782;66633;66724;66736;67929;68160;69614;70489;71078;71906;72851 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21:8209806-8218947&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.639455782313 1.2 -3.09740204082 0.2564 -1.93447755102 -1.1629244898 -0.0295243782769 0.266602341851 60224 24212 24212;24473;28249;29347;30192;30725;32427;32565;33191;33474;33891;34169;34899;34994;35113;35595;35924;35955;36868;37300;39595;39945;41047;41730;42398;43530;43706;44122;44587;45174;48640;49212;50405;52214;52578;54312;58705;60224;60833;65293;72506;72851 -3.93072653061 0.1883 -2.12413673469 -1.80658979592 -0.0460507176958 0.41239431481 69386 19413 19413;19521;22155;23093;27228;27507;28343;28377;29437;30394;32080;32516;36596;37172;38547;39518;40395;42279;42541;46786;48165;48990;49578;49775;49937;50269;51703;54655;54712;56349;58703;59449;60342;61202;61272;66096;67502;69072;69104;69386;69749;72934 0.0 0.0 ENST00000623664.1 NCintron not annotated SSU-rRNA_Hsa repeat sequence 72911 543143 chr20:32434626-32434715+ NoOverlap chr20 32434626 32434715 + 1.94221002658 30 0.972947788713 1.53336661284 0.40884341374 ENST00000306058.9,ENST00000375687.8,ENST00000613218.4,ENST00000620121.4 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr20;32434625;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A32434626-32434715%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr20%3A32434626-32434715&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.145309210932 -0.165766522415 0.373658806532 31022429 31022518 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr20;31022428;90;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr20%3A32434626-32434715%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr20%3A31022429-31022518&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GGHHCHRRGGWPGWRWRRGHR*GRWQRQQQW*WW Same 544532 chr20:32434626-32434715+ 72052 72052 859 11 464 32434565 32434819 668 668;72911 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20:32434565-32434819&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.733333333333 0.520833333333 -6.87078333333 0.9744 -9.61826333333 2.74748 -0.099663656212 0.538221896199 73689 1801 1801;73689 -19.7393066667 0.7756 -28.15763 8.41832333333 -0.031361167843 0.62557525472 58338 6071 6071;58338 0.0 0.262835625975 chr2:25743828-25744476- ENST00000306058.9 CDS under investigation The PhyloCSF signal for ASXL1 changes frame in the final exon and goes back to the original frame after ~250bp. This sequence conformation is conserved in mammals, and while this could conceivably indicate a programmed frameshift, it could instead be explained by an unknown splice variant that causes this exon to be translated in a different frame. 72954 479643 chr10:129871012-129871086+ NoOverlap chr10 129871012 129871086 + 2.19122805834 25 0.987374074922 1.06045210481 1.13077595353 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;129871011;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129871012-129871086%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A129871012-129871086&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.18195803614 -0.170462189991 0.435587808194 131669276 131669350 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;131669275;75;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A129871012-129871086%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A131669276-131669350&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LCLGCPDGWLILQLIGLYLYLS*GHLFALTR Same 481548 chr10:129871012-129871086+ 72201 72201 753 8 950 129833677 129912391 1459 1459;3379;4497;4619;5103;5362;6079;8511;9200;9554;10685;11564;11844;11900;12061;14522;14705;15243;18280;18828;20138;21525;23189;24043;24551;30312;30788;31604;32440;35190;36389;41051;42418;42449;42748;46131;53068;53570;59416;59689;65019;65862;66403;68145;69564;70932;71462;71891;72954 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:129833677-129912391&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.493333333333 0.446428571429 -0.68346 0.9778 -1.105512 0.422052 -0.0107703988912 0.371283523565 47605 3749 3749;3774;3890;4494;4555;5336;6169;6955;6969;8576;9716;9892;10037;10254;10504;10601;12770;13899;14415;18652;19155;19474;20339;20782;21082;21162;21527;23377;23807;24346;26057;27206;30599;34847;37237;37593;38559;39523;43625;47605;48427;49643;52980;57884;59150;67021;68158;68734;69423 -1.564672 0.926 -4.302676 2.738004 0.0622134658658 0.534563364377 16445 4525 4525;5311;6352;7146;7759;8256;10824;11199;12642;12659;12775;14343;14767;14793;15316;15614;16412;16445;16853;18624;22303;23225;23432;24951;25293;26398;27405;31889;34654;36521;37978;41064;44090;48354;53513;55286;56145;59069;59456;62499;66063;67405;67996;68110;68691;69674;69804;69962;72549 0.0 0.0 ENST00000355311.9 AntiCDSintron not annotated potentially spurious 73021 618440 chr11:47326705-47326737+ Extension chr11 47326705 47326737 + 4.46636363864 11 0.910458672326 2.88750903173 1.57885460691 chr11:47326705-47326815+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr11;47326704;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A47326705-47326737%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr11%3A47326705-47326737&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.17016040906 -0.180194549227 0.346950653438 47348256 47348288 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr11;47348255;33;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr11%3A47326705-47326737%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr11%3A47348256-47348288&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LSLCGWGCSWESVLCGAGVEPVGLTPASLPLLQVFIELNHIK Same 619142 chr11:47326705-47326737+ 72252 72252 769 0 491 47323975 47326737 725 725;7074;33773;69571;73021 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11:47323975-47326737&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.69696969697 0.323529411765 3.3975 0.9836 3.32635454545 0.0711454545455 0.0138243355016 0.239771008064 35166 8028 8028;16774;35166;46166;60522 -9.41171818182 0.7631 -9.35779090909 -0.0539272727273 -0.0440622960997 0.312148978912 68134 1626 1626;8192;19804;26924;68134 0.0 0.0 ENST00000311027.9,ENST00000395336.7,ENST00000460452.5 ExtensionMid,CDSintron,NCintron pseudogene Mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) unprocessed pseudogene (ENSG00000283338) 73042 500751 chr14:22503760-22503798+ NoOverlap chr14 22503760 22503798 + 3.81149241557 13 0.966828060167 0.336208450298 3.47528396528 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;22503759;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22503760-22503798%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A22503760-22503798&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.206496591177 -0.18409244569 0.622662303491 22972745 22972783 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;22972744;39;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A22503760-22503798%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A22972745-22972783&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") STALECGSSNTGKLIFGQGTTLQVKPGR None NA NA 0 92 22478901 22550660 109 109;2852;4268;5230;6497;7326;7543;7557;8478;8964;14466;16302;16859;17115;23976;25430;33559;36021;73042 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:22478901-22550660&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.410256410256 0.0 3.65476923077 0.994 -2.48033076923 6.1351 0.176030773698 0.768729591577 9926 60 60;1430;1948;2632;2680;2947;3038;3053;3213;3219;3778;4521;4765;4937;6572;6699;8664;9926;29988 7.40050769231 0.3897 -2.91454615385 10.3150538462 0.195669660118 0.752429047539 6366 142 142;3189;3777;3979;4142;4185;4523;4994;5653;5887;6031;6177;6246;6366;6416;7552;7714;8050;44419 0.0 0.0 ENST00000612375.1,ENST00000611204.4 NC,NCintron immunoglobulin segment overlaps an immunoglobulin region 73071 657207 chr17:7909341-7909400- Extension chr17 7909341 7909400 - 1.43949497342 20 0.710760662242 -1.73939494193 3.17888991535 chr17:7909134-7909400- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7909340;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7909341-7909400-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7909341-7909400&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.279180974522 -0.189108544019 0.670726618148 7812659 7812718 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7812658;60;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7909341-7909400-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7812659-7812718&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GVRGEDLRSVVGPPPRGAAAALTLVQDGVGR Different 521719 chr17:7909134-7909400- 7032 7032 66039 0 320 7909339 7916216 436 436;1938;4281;5688;13182;72031;73071;73673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7909339-7916216&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.766666666667 1.02079395085 0.84843 0.9248 0.880015 -0.031585 -0.00348936557586 0.306285656382 43318 349 349;1564;1761;1828;15031;19061;29084;43318 -8.57964 0.6279 -9.72871 1.14907 -0.0399501454235 0.416708062751 65199 2836 2836;3263;3677;4021;11908;12386;65199;71655 0.0 0.0 ENST00000439235.5,ENST00000330494.11,ENST00000470531.5 AntiCDS,AntiCDSintron,AntiNCintron protein-coding gene protein-coding gene ENSG00000179859 73094 659495 chr17:47896295-47896321- Extension chr17 47896295 47896321 - 3.75528883686 9 0.871900511177 -3.12244443099 6.87773326784 chr17:47896187-47896321- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;47896294;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896295-47896321-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A47896295-47896321&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.364951178077 -0.193391976883 0.934602226521 45973661 45973687 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;45973660;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896295-47896321-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A45973661-45973687&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") EDPAGSGRDPPLITTSSSLASAASAATESLTPPAK Same 660116 chr17:47896295-47896321- 72324 72324 770 0 443 47896176 47896544 633 633;10409;17370;20193;30561;56450;73094;73160 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:47896176-47896544&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.851851851852 0.830769230769 -4.17774444444 0.9587 -11.2285111111 7.05076666667 -0.0437327073465 0.787583896223 68592 6473 6473;12368;17549;37782;39868;58958;68592;73642 -11.2322222222 0.4164 -21.2209111111 9.98868888889 -0.0225439369561 0.659854052993 50264 14976 14976;26600;36070;36380;45476;50232;50264;57233 0.0 0.0 ENST00000376741.4,ENST00000613139.1 AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 73160 521948 chr17:47896388-47896519- NoOverlap chr17 47896388 47896519 - 1.31182719767 44 0.851217947384 1.11345457015 0.198372627524 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;47896387;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896388-47896519-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A47896388-47896519&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.168792518306 -0.208050317315 0.408668871975 45973754 45973885 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;45973753;132;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A47896388-47896519-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A45973754-45973885&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GRGVERPLPGASARLASPAPPPGGNPPSPAPPEAGPRRQTQPQGGTPGLGSLSPRPLPVFLTLGGR Same 523373 chr17:47896388-47896519- 72426 72426 734 0 443 47896176 47896544 633 633;10409;17370;20193;30561;56450;73094;73160 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:47896176-47896544&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.787878787879 0.6703125 -4.20396136364 0.9162 -4.85920909091 0.655247727273 -0.0953335399279 0.406917760812 73642 6473 6473;12368;17549;37782;39868;58958;68592;73642 -6.12984318182 0.3945 -7.47625 1.34640681818 -0.0165586581762 0.531204548403 45476 14976 14976;26600;36070;36380;45476;50232;50264;57233 0.0 0.0075235469874 chr7:100359337-100359537+ ENST00000376741.4,ENST00000613139.1 AntiCDSintron,AntiUTR5intron not annotated putative regulatory region 73272 472213 chr1:46466510-46466557- NoOverlap chr1 46466510 46466557 - 2.15233128518 16 0.775549324788 -0.655168686062 2.80749997124 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;46466509;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466510-46466557-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A46466510-46466557&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.300658799524 -0.22976355721 0.58500556348 46932182 46932229 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;46932181;48;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A46466510-46466557-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A46932182-46932229&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") APAARGRLGRSGARGGRGGAGAWR Same 474091 chr1:46466510-46466557- 72545 72545 727 0 1039 46448320 46466815 1586 1586;4166;4364;6954;7001;12344;14948;21944;27913;29912;31134;37875;42326;63692;65303;68731;69308;69969;73272 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:46448320-46466815&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.875 0.985337243402 -0.765125 0.6948 -2.60915625 1.84403125 -0.0222593735651 0.435933855327 55674 4552 4552;6553;11146;21508;25219;29368;31194;34313;35285;35620;41616;45262;45465;48699;48843;51388;55674;57607;70045 -3.50213125 0.3151 -5.10435625 1.602225 -0.0244011139306 0.426453535843 51970 11286 11286;13413;13817;24293;29223;30818;32582;34899;38187;38198;39757;43966;44176;46982;51189;51970;55751;61426;67777 0.0 0.0 ENST00000455247.1 AntiNCintron not annotated putative regulatory region 73307 662493 chr18:10714931-10714957- Extension chr18 10714931 10714957 - 1.12087774277 9 0.93526783822 -7.62308877707 8.74396651983 chr18:10714760-10714957- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr18;10714930;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A10714931-10714957-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr18%3A10714931-10714957&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.83580724515 -0.238969577802 1.01341845721 10714929 10714955 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr18;10714928;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr18%3A10714931-10714957-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr18%3A10714929-10714955&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") TVAMSHSPQGNVPTR Same 663114 chr18:10714931-10714957- 72632 72632 675 0 506 10708277 10714957 750 750;73307 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18:10708277-10714957&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.481481481481 0.0 -12.6285 0.9392 -14.7309777778 2.10247777778 0.0661397928878 0.499984663353 20268 1517 1517;20268 -20.9745222222 0.6201 -25.9655555556 4.99103333333 0.0060029970278 0.363492330169 32460 2021 2021;32460 0.0 0.0 ENST00000302079.10,ENST00000582913.5 ExtensionMid,NCintron coding exon(s) PIEZO2 cassette exon 73310 548431 chr22:30969349-30969519+ NoOverlap chr22 30969349 30969519 + 1.23415966106 57 0.942603590689 1.88596489973 -0.651805238668 NA =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr22;30969348;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969349-30969519%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr22%3A30969349-30969519&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.0943856373866 -0.23969793583 0.322921948677 31365335 31365505 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr22;31365334;171;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr22%3A30969349-30969519%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr22%3A31365335-31365505&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") SKKPWRALPPSRVW*GEGTGVRSIERSVGGSFSCSGIQLLGRRPGRRGARPVAVGARAASFFSYAELGR Same 549798 chr22:30969349-30969519+ 72465 72465 845 14 647 30968833 30969812 994 994;1622;7572;73310 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22:30968833-30969812&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.748538011696 1.04370117188 -0.850128070175 0.8311 0.0370087719298 -0.887136842105 -0.0174615524001 0.327666700902 52363 1582 1582;6148;22372;52363 -2.19531578947 0.3357 -1.5832245614 -0.61209122807 0.009844712573 0.475850307823 30822 4480 4480;8146;20994;30822 0.0 0.0 redundant PhyloCSF signals are accounted for elsewhere on the list 73365 614198 chr10:122729428-122729454+ Extension chr10 122729428 122729454 + 4.03292234739 9 0.772813509321 0.99194433954 3.04097800785 chr10:122729428-122729523+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr10;122729427;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122729428-122729454%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr10%3A122729428-122729454&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.277114287663 -0.255576437765 0.520086339507 124488944 124488970 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr10;124488943;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr10%3A122729428-122729454%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr10%3A124488944-124488970&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") DWIAVQLVEGSGR Same 614907 chr10:122729428-122729454+ 72615 72615 750 0 184 122729428 122734656 222 222;73365 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10:122729428-122734656&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.518518518519 0.6 5.43741111111 0.9246 2.59394444444 2.84346666667 0.0267500414415 0.439398693483 29957 44 44;29957 12.1501 0.6748 -1.11413333333 13.2642333333 0.420008409377 0.802922430308 3860 1872 1872;3860 0.0 0.133287985831 chr10:122605856-122606179+ redundant PhyloCSF signals are accounted for elsewhere on the list 73484 601061 chr1:92168806-92168865+ Extension chr1 92168806 92168865 + 1.29791997373 20 0.940269321736 -2.57337993681 3.87129991055 chr1:92168806-92168967+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;92168805;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A92168806-92168865%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A92168806-92168865&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.505187839087 -0.296740064064 0.753711376276 92634363 92634422 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;92634362;60;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A92168806-92168865%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A92634363-92634422&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") GIMTGCYDNVALTSC*FVA*TQGFTCK Same 601772 chr1:92168806-92168865+ 72756 72756 728 6 112 92166967 92168865 134 134;7051;73484 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:92166967-92168865&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.466666666667 0.0 -0.36331 0.9755 -0.959755 0.596445 -0.01192016266 0.357657849544 48415 296 296;3225;48415 -5.486725 0.7535 -8.073185 2.58646 -0.00936043510397 0.488145991913 40536 966 966;2739;40536 0.0 0.0 ENST00000370378.4 ExtensionMid coding exon(s) Readthrough' protein-coding transcript added between BTBD8 and KIAA1107 containing 3 new coding exons; actually shows that this is really one locus, with HGNC retaining the BTBD8 symbol 73489 669761 chr19:15428510-15428545- Extension chr19 15428510 15428545 - 2.18994169682 12 0.747662826479 -1.6535914739 3.84353317072 chr19:15428303-15428545- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr19;15428509;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15428510-15428545-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr19%3A15428510-15428545&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.360110576848 -0.298796431308 0.676547881212 15539321 15539356 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr19;15539320;36;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr19%3A15428510-15428545-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr19%3A15539321-15539356&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") AGQGGGREPPLCFVSAALDSDGGR Same 670366 chr19:15428510-15428545- 72759 72759 730 0 343 15428334 15450039 471 471;473;683;1526;1538;4803;12290;19708;38442;38721;47205;50111;52166;54061;59171;61747;61857;64258;68054;73489 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr19:15428334-15450039&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.666666666667 0.771428571429 1.03328333333 0.9464 1.34495833333 -0.311675 -0.027839453101 0.228128603952 59180 577 577;766;777;1195;1511;1535;13985;20348;33971;42963;43121;53611;53632;55256;56790;59180;62509;65756;67567;73143 -11.7669166667 0.5984 -8.70288333333 -3.06403333333 -0.019094340077 0.208494487496 47385 929 929;1831;1858;1917;2605;3513;20477;20641;30153;32260;32995;39573;43942;47385;48751;54223;58453;58894;61022;70470 0.0 0.0270036569368 chr19:15436806-15437129- ENST00000545156.5,ENST00000263381.11 ExtensionMid,CDSintron coding exon(s) WIZ 2 cassette exons 73619 635146 chr13:98845373-98845399- Extension chr13 98845373 98845399 - 3.06158887015 9 0.854561175962 0.9887778759 2.07281099425 chr13:98845316-98845399- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr13;98845372;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98845373-98845399-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr13%3A98845373-98845399&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.455404511443 -0.356110226055 0.412276775153 99497627 99497653 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr13;99497626;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr13%3A98845373-98845399-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr13%3A99497627-99497653&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") HPITK*LFLCFQCEK Different 502297 chr13:98845316-98845399- 23382 23382 50237 3 324 98845373 98854737 443 443;73619 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13:98845373-98854737&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.333333333333 0.0 1.48827777778 0.9814 0.00336666666667 1.48491111111 -0.0314748331581 0.341995608733 61451 921 921;61451 -0.499855555556 0.8691 -2.84444444444 2.34458888889 -0.0172768082032 0.404213715642 46026 625 625;46026 0.0 0.0 ENST00000339416.6,ENST00000630992.2 CDSintron,NCintron coding exon(s) DOCK9 cassette exon 73636 703104 chr4:145763053-145763106- Extension chr4 145763053 145763106 - 1.26540003883 18 0.923041123064 0.439722369115 0.825677669711 chr4:145763053-145763136- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr4;145763052;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A145763053-145763106-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr4%3A145763053-145763106&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.549516008939 -0.363697997399 0.359440407779 146684205 146684258 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr4;146684204;54;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr4%3A145763053-145763106-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr4%3A146684205-146684258&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") VSDSSR*GPAWRRGCVCT Same 703725 chr4:145763053-145763106- 72875 72875 761 7 216 145760752 145763106 266 266;24988;47053;73636 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4:145760752-145763106&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.574074074074 0.230769230769 -2.04357222222 0.9987 -1.16402777778 -0.879544444444 -0.0482702830871 0.229191455452 70489 268 268;7199;31923;70489 -9.29612222222 0.4372 -9.23592222222 -0.0602 -0.039952555892 0.355023707353 65202 626 626;10893;21541;65202 0.0 0.0 ENST00000508784.5,ENST00000379448.8,ENST00000503462.1,ENST00000511659.1,ENST00000510096.1 Extension3p,UTR3,CDSintron,UTR3intron,AntiNCintron pseudo-exon ZNF827 has pseudo repeats downstream of the STOP codon. 73673 657209 chr17:7910412-7910438- Extension chr17 7910412 7910438 - 2.92021115621 9 0.853192950332 -0.366722159916 3.28693331612 chr17:7910412-7910594- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr17;7910411;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7910412-7910438-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr17%3A7910412-7910438&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.474927231654 -0.389117444555 0.569061783069 7813730 7813756 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr17;7813729;27;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr17%3A7910412-7910438-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr17%3A7813730-7813756&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") LHVAQQLLQLVQNWGPGHR Different 521722 chr17:7910412-7910594- 66750 66750 6923 0 320 7909339 7916216 436 436;1938;4281;5688;13182;72031;73071;73673 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17:7909339-7916216&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.703703703704 0.3 2.11251111111 1.0 -6.61346666667 8.72597777778 0.074120800794 0.898245592112 19061 349 349;1564;1761;1828;15031;19061;29084;43318 -8.3938 0.7678 -15.1482444444 6.75444444444 -0.0507658021115 0.561175935417 71655 2836 2836;3263;3677;4021;11908;12386;65199;71655 0.0 0.0 ENST00000330494.11,ENST00000481999.1,ENST00000449744.1 AntiCDS,AntiNC,AntiCDSintron protein-coding gene protein-coding gene ENSG00000179859 73751 637697 chr14:23090103-23090132- Extension chr14 23090103 23090132 - 0.364169931412 10 0.78252231632 -2.10306004882 2.46722998023 chr14:23089995-23090132- =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr14;23090102;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23090103-23090132-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr14%3A23090103-23090132&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.654538766003 -0.47669344763 0.515087111508 23559312 23559341 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr14;23559311;30;0&strand=-&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr14%3A23090103-23090132-_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr14%3A23559312-23559341&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") PPSLLYIFLHAESFTPSLPRPDLYFAEASAESEDEMIHPEGVASLLPPDFQSSLERPELELSR Same 638348 chr14:23090103-23090132- 73012 73012 739 0 129 23090103 23104878 156 156;429;610;830;879;889;1016;1032;1173;1669;1773;2191;2681;3259;3508;5235;6635;7464;23312;40627;73751 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14:23090103-23104878&complement_hg38=1&hgt.revCmplDisp_hg38=1", "ClusterUCSCview") 0.6 0.923076923077 -4.38075 0.9702 -8.16973 3.78898 -0.0430125364033 0.554856657323 68230 257 257;528;659;787;987;1556;1597;1621;1754;1784;2062;2468;3081;3133;3217;10725;11935;18101;58956;68230;71187 -9.81752 0.4127 -11.3123 1.49478 -0.0224744032034 0.359875714041 50197 62 62;168;219;694;1191;1897;2156;2573;2676;2685;2900;3053;3206;3264;5208;15078;49743;50197;52227;72931;73628 0.0 0.0 ENST00000262710.5,ENST00000457657.5 ExtensionMid,CDSintron protein-coding gene protein-coding gene ENSG00000283654 73766 598856 chr1:19165221-19165247+ Extension chr1 19165221 19165247 + 1.97073337767 9 1.0 0.821766614914 1.14896676275 chr1:19165221-19165346+ =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg38_20&interval=chr1;19165220;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A19165221-19165247%2B", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg38&position=chr1%3A19165221-19165247&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC") -0.718741764591 -0.493933115109 0.319713364804 19491715 19491741 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?alnset=hg19&interval=chr1;19491714;27;0&prologue=135&epilogue=135&spliceSites=hg&hideInserts&wrap=45&footer=chr1%3A19165221-19165247%2B_hg19", "CodAlignView19") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&db=hg19&position=chr1%3A19491715-19491741&hgt.suggest=&hgt.suggestTrack=refGene&Submit=submit&hgsid=240353321&hgt.newJQuery=1", "UCSC19") ICTVLAGHQSSHKKITKSCHSLSWK None NA NA 0 142 19165221 19173121 170 170;73766 =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1:19165221-19173121&complement_hg38=0&hgt.revCmplDisp_hg38=0", "ClusterUCSCview") 0.333333333333 0.0 1.21931111111 0.9789 -2.34946666667 3.56877777778 -0.0266456143453 0.518627131217 58463 10342 10342;58463 -15.0806 0.7087 -16.8286333333 1.74803333333 -0.0222343501374 0.32797254778 50003 5582 5582;50003 0.0 0.0 ENST00000375254.7,ENST00000419533.1 AntiCDSintron,AntiNCintron not annotated potentially spurious