animal_sample_name,sample_name,species,sex,tissue,condition,biological_replicate,technical_replicate,number_reads,percentage_mapped_reads,percentage_confidently_mapped_reads,percentage_confidently_intergenic_mapped_reads,percentage_confidently_intronic_mapped_reads,percentage_confidently_exonic_mapped_reads,percentage_confidently_transcriptomic_mapped_reads,percentage_antisense_to_gene_mapped_reads,cell_absence_filtered_barcodes,multiplet_filtered_barcodes,retained_barcodes,filtered_genes,retained_genes_across_all_cells,species_tissue_condition_variable_genes
619_365_1,nmr_1.1,NMR,F,spleen,NA,1,1,129289673,93.4,89.7,10.2,12.9,66.6,64.1,0.4,734022,19,3239,0,4455,2231
619_365_2,nmr_1.2,NMR,F,spleen,NA,1,2,153657907,93.8,89.7,10,12.7,67,64.5,0.4,733847,17,3416,0,4628,2231
621_117_1,nmr_2.1,NMR,F,spleen,NA,2,1,130214927,93.2,89,10.8,15.3,62.9,60.3,0.4,734173,1,3106,0,4616,2231
621_117_2,nmr_2.2,NMR,F,spleen,NA,2,2,136163503,94.1,89.7,11.1,16.1,62.5,59.9,0.5,734165,6,3109,0,3877,2231
633_309_1,nmr_3.1,NMR,M,spleen,NA,3,1,91737534,94,89.3,12.5,15,61.8,59.3,0.4,733046,22,4212,0,3703,2231
633_309_2,nmr_3.2,NMR,M,spleen,NA,3,2,113876515,93.3,89.4,12.5,14.5,62.4,59.9,0.4,732729,23,4528,0,3637,2231
634_594_1,nmr_4.1,NMR,M,spleen,NA,4,1,96892182,94.2,90.1,11.1,14.5,64.5,62,0.4,733140,23,4117,0,3241,2231
634_594_2,nmr_4.2,NMR,M,spleen,NA,4,2,134752314,93.5,89.6,10.8,14.2,64.7,62.1,0.4,733031,27,4222,0,3746,2231
Mouse1_1,mouse_1.1,mouse,F,spleen,NA,1,1,129206356,94.1,82.1,2.7,16,63.5,59.5,1.5,733425,2,3853,0,4942,1136
Mouse1_2,mouse_1.2,mouse,F,spleen,NA,1,2,155797699,94.3,82.1,2.7,15.4,64,60.1,1.4,733747,1,3532,0,5635,1136
Mouse2_1,mouse_2.1,mouse,F,spleen,NA,2,1,155797699,94.3,82.1,2.7,15.4,64,60.1,1.4,732212,2,5066,0,5270,1136
Mouse2_2,mouse_2.2,mouse,F,spleen,NA,2,2,129197432,94.1,81.9,2.7,15.4,63.8,59.9,1.3,731506,22,5752,0,3625,1136
Mouse3_1,mouse_3.1,mouse,M,spleen,NA,3,1,129054473,94.4,82.3,2.6,15.8,63.9,59.8,1.5,734465,23,2792,0,3940,1136
Mouse3_2,mouse_3.2,mouse,M,spleen,NA,3,2,105857368,93.9,81.4,2.7,14.6,64,60,1.5,734554,23,2703,0,3698,1136
Mouse4_1,mouse_4.1,mouse,M,spleen,NA,4,1,102856510,94.2,81.8,2.7,14.1,65,61.3,1.3,729625,54,7601,0,2794,1136
Mouse4_2,mouse_4.2,mouse,M,spleen,NA,4,2,104119248,94.3,81.8,2.8,15.6,63.3,59.3,1.5,729464,27,7789,0,3686,1136
nmr_CIC_1,nmr.CIC_1,NMR,M,circulating immune cells,NA,1,1,FAILED,FAILED,FAILED,FAILED,FAILED,FAILED,FAILED,FAILED,FAILED,FAILED,FAILED,FAILED,FAILED,FAILED
nmr_CIC_2,nmr.CIC_2,NMR,M,circulating immune cells,NA,2,1,128634250,47.5,45.9,5.4,7.6,32.8,31.6,0.2,733505,3,3772,0,2773,2202
nmr_CIC_3,nmr.CIC_3,NMR,F,circulating immune cells,NA,3,1,135004171,47.2,45.7,5.6,7.5,32.5,31.1,0.2,733892,4,3384,0,2501,2202
nmr_CIC_4,nmr.CIC_4,NMR,F,circulating immune cells,NA,4,1,118583023,47.6,46.1,5.5,7.7,33,31.7,0.2,733899,5,3376,0,2191,2202
mouse_CIC_1,mouse.CIC_1,mouse,M,circulating immune cells,NA,1,1,143649273,48.6,31.4,0.3,1.9,29.1,28.1,0.2,733011,3,4266,0,1195,2295
mouse_CIC_2,mouse.CIC_2,mouse,M,circulating immune cells,NA,2,1,144011135,48.7,35.6,0.5,2.2,33,31.9,0.2,733172,12,4096,0,1758,2295
mouse_CIC_3,mouse.CIC_3,mouse,F,circulating immune cells,NA,3,1,147867362,48.3,32.1,0.5,3,28.6,27.4,0.3,733537,3,3740,0,2171,2295
mouse_CIC_4,mouse.CIC_4,mouse,F,circulating immune cells,NA,4,1,146270359,48.1,32.3,0.6,3,28.8,27.6,0.3,733627,3,3650,0,2203,2295
nmr.spleen.saline_1_1,nmr.spleen.saline_1_1,NMR,M,spleen,saline,1,1,152830322,67.7,65.6,7.3,10.1,48.2,46.4,0.3,735039,1,2240,0,2951,2958
nmr.spleen.saline_1_2,nmr.spleen.saline_1_2,NMR,M,spleen,saline,1,2,141694666,67.8,65.6,7.3,10,48.2,46.4,0.3,734672,28,2580,0,2190,2958
nmr.spleen.saline_2_1,nmr.spleen.saline_2_1,NMR,F,spleen,saline,2,1,164046353,67.4,65.3,5.1,6.1,54.1,52.4,0.2,732878,50,4352,0,2254,2958
nmr.spleen.saline_2_2,nmr.spleen.saline_2_2,NMR,F,spleen,saline,2,2,164239105,66.8,64.7,5.1,6.1,53.5,51.8,0.2,733047,51,4182,0,2276,2958
nmr.spleen.LPS_1_1,nmr.spleen.LPS_1_1,NMR,M,spleen,LPS,1,1,148509436,68.2,66.4,6.1,8.3,52,50.3,0.3,734493,40,2747,0,2296,2555
nmr.spleen.LPS_1_2,nmr.spleen.LPS_1_2,NMR,M,spleen,LPS,1,2,141263291,67,65.4,6.2,8.1,51.1,49.2,0.3,734818,2,2460,0,3603,2555
nmr.spleen.LPS_2_1,nmr.spleen.LPS_2_1,NMR,F,spleen,LPS,2,1,154969187,67.8,65.7,6.2,8.4,51.2,49.5,0.3,733440,4,3836,0,2542,2555
nmr.spleen.LPS_2_2,nmr.spleen.LPS_2_2,NMR,F,spleen,LPS,2,2,166762343,67.6,65.7,6.3,8.8,50.7,48.9,0.3,733825,19,3436,0,2225,2555
nmr.CIC.saline_1_1,nmr.CIC.saline_1_1,NMR,M,circulating immune cells,saline,1,1,152200352,67.2,65.7,7.4,10.7,47.7,45.9,0.3,735356,7,1917,0,1721,1886
nmr.CIC.saline_1_2,nmr.CIC.saline_1_2,NMR,M,circulating immune cells,saline,1,2,124896366,67.1,65.5,7.6,10.9,47.1,45.2,0.3,735161,24,2095,0,1161,1886
nmr.CIC.saline_2_1,nmr.CIC.saline_2_1,NMR,F,circulating immune cells,saline,2,1,143658051,67.5,66,6.2,8.6,51.1,49.4,0.3,735176,20,2084,0,1168,1886
nmr.CIC.saline_2_2,nmr.CIC.saline_2_2,NMR,F,circulating immune cells,saline,2,2,162145872,68,66.3,6.5,9.4,50.4,48.8,0.3,735079,4,2197,0,1642,1886
nmr.CIC.LPS_1_1,nmr.CIC.LPS_1_1,NMR,M,circulating immune cells,LPS,1,1,128874648,67.2,65.9,5.2,7.5,53.2,51.5,0.3,734937,3,2340,0,1742,2670
nmr.CIC.LPS_1_2,nmr.CIC.LPS_1_2,NMR,M,circulating immune cells,LPS,1,2,144319635,67.5,66.3,5,7.1,54.2,52.5,0.3,735049,2,2229,0,2266,2670
nmr.CIC.LPS_2_1,nmr.CIC.LPS_2_1,NMR,F,circulating immune cells,LPS,2,1,123989080,67.8,66.5,5.1,6.9,54.5,52.8,0.3,736590,9,681,0,1673,2670
nmr.CIC.LPS_2_2,nmr.CIC.LPS_2_2,NMR,F,circulating immune cells,LPS,2,2,152948128,67.6,66.1,5,6.6,54.5,52.8,0.3,736620,4,656,0,1669,2670
Mouse 156 Spleen 1,mouse.spleen.saline_1_1,mouse,M,spleen,saline,1,1,188784687,96,84.3,3.5,23.2,57.5,53,2.2,736208,6,1066,0,2021,2305
Mouse 156 Spleen 2,mouse.spleen.saline_1_2,mouse,M,spleen,saline,1,2,184508521,95.8,83.2,3.5,20.8,58.9,54.7,1.9,735002,3,2275,0,2984,2305
Mouse 159 Spleen 1,mouse.spleen.saline_2_1,mouse,F,spleen,saline,2,1,193811412,95.5,83,3.7,18.2,61.2,57,1.8,734464,26,2790,0,2567,2305
Mouse 159 Spleen 1,mouse.spleen.saline_2_2,mouse,F,spleen,saline,2,2,190829992,95.8,83.8,3.5,18.9,61.4,57.2,1.9,734389,7,2884,0,2990,2305
Mouse 157 Spleen 1,mouse.spleen.LPS_1_1,mouse,M,spleen,LPS,1,1,196825716,95.7,83.1,3.7,19,60.4,56.3,1.9,735022,1,2257,0,3117,1839
Mouse 157 Spleen 2,mouse.spleen.LPS_1_2,mouse,M,spleen,LPS,1,2,185568656,95,83,3.6,18.4,61,56.7,1.9,735017,1,2262,0,2860,1839
Mouse 160 Spleen 1,mouse.spleen.LPS_2_1,mouse,F,spleen,LPS,2,1,216704067,95.8,83.6,3.4,16.5,63.7,59.5,1.9,734229,3,3048,0,3790,1839
Mouse 160 Spleen 2,mouse.spleen.LPS_2_2,mouse,F,spleen,LPS,2,2,208290964,95.7,83.5,3.4,16.4,63.6,59.5,1.8,734198,6,3076,0,3494,1839
Mouse 156 CIC 1,mouse.CIC.saline_1_1,mouse,M,circulating immune cells,saline,1,1,175222172,96.5,74.9,2.4,14.2,58.4,55.1,1.4,736030,1,1249,0,2031,2821
Mouse 156 CIC 2,mouse.CIC.saline_1_2,mouse,M,circulating immune cells,saline,1,2,177309220,96.7,79.5,2.4,14.4,62.7,59.5,1.3,735881,1,1398,0,1937,2821
Mouse 159 CIC 1,mouse.CIC.saline_2_1,mouse,F,circulating immune cells,saline,2,1,220499857,96.7,74.2,2,10,62.2,58.9,1.2,735606,3,1671,0,3300,2821
Mouse 159 CIC 2,mouse.CIC.saline_2_2,mouse,F,circulating immune cells,saline,2,2,186929553,96.6,78.1,2.1,10.2,65.8,62.6,1.1,735613,24,1643,0,2536,2821
Mouse 157 CIC 1,mouse.CIC.LPS_1_1,mouse,M,circulating immune cells,LPS,1,1,196781652,96.4,73.2,2,8.3,62.8,60.2,1,736016,3,1261,0,2415,2679
Mouse 157 CIC 2,mouse.CIC.LPS_1_2,mouse,M,circulating immune cells,LPS,1,2,183156519,96.5,70.7,2,8.4,60.3,57.6,1,735879,9,1392,0,2117,2679
Mouse 160 CIC 1,mouse.CIC.LPS_2_1,mouse,F,circulating immune cells,LPS,2,1,196554135,97.1,63.8,0.8,3.4,59.6,57.4,0.4,736652,4,624,0,2521,2679
Mouse 160 CIC 2,mouse.CIC.LPS_2_2,mouse,F,circulating immune cells,LPS,2,2,193873490,97.2,64.1,0.8,3.4,59.9,57.7,0.4,736677,2,601,0,2626,2679