Motif_Name,median_T0_H3K27Ac,median_2h_H3K27Ac,median_24h_H3K27Ac,median_FD_over_background_T0_H3K27Ac,median_percentage_T0_H3K27Ac,LC352_0H_H3K27AC,LC353_0H_H3K27AC,LC354_0H_H3K27AC,LC352_2H_H3K27AC,LC353_2H_H3K27AC,LC354_2H_H3K27AC,LC352_24H_H3K27AC,LC353_24H_H3K27AC,LC354_24H_H3K27AC,LC352_0H_H3K4ME3,LC353_0H_H3K4ME3,LC354_0H_H3K4ME3,LC352_2H_H3K4ME3,LC353_2H_H3K4ME3,LC354_2H_H3K4ME3,LC352_24H_H3K4ME3,LC353_24H_H3K4ME3,LC354_24H_H3K4ME3
RLR1?/SacCer-Promoters/Homer,29680,26330,24620,5.18,0.4,16300,29680,42810,22880,26330,45130,19590,36440,24620,3343,22070,20960,10970,16720,19550,4787,26230,13470
GAGA-repeat/Arabidopsis-Promoters/Homer,16340,14630,14280,2.68,0.42,8290,16340,24530,11980,14630,26240,10020,20800,14280,1413,8591,8528,4337,5965,7922,2292,8596,6432
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer,16020,12840,13280,2.43,0.47,8794,16020,24140,12030,12840,23530,9840,19000,13280,2511,12500,12740,7340,9391,11440,3468,12620,8227
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer,14050,12170,12850,2.38,0.44,6885,14050,21000,10540,12170,21450,8057,17080,12850,2118,11160,11000,6379,7581,10190,3608,9736,8503
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer,13120,11820,11850,2.23,0.45,6041,13120,20280,9164,11820,21420,6839,17060,11850,871.5,5847,5822,3153,3774,5676,1811,5062,5319
Unknown6/Drosophila-Promoters/Homer,12950,10930,11040,2.49,0.39,6271,12950,18460,9452,10930,19320,7252,15910,11040,1899,12530,11640,6462,8847,11030,2866,12690,7405
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer,12680,10910,10980,2.54,0.37,6206,12680,18730,9252,10910,19650,7023,16020,10980,825.5,6350,5920,3268,4017,5941,1982,5355,4837
GAGA-repeat/SacCer-Promoters/Homer,12600,10860,11510,1.48,0.78,6496,12600,17330,9352,10860,17780,7440,14730,11510,2477,11220,11350,7326,9029,10610,4479,10820,8260
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer,12220,9995,10710,2.03,0.49,6630,12220,18840,9455,9995,18320,7259,14420,10710,2239,9790,9731,5724,7254,8969,2865,9236,6925
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer,11830,10580,10430,2.81,0.31,5914,11830,17250,9171,10580,18410,7335,15050,10430,1034,7153,6813,3236,4492,6377,1354,7424,4596
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer,11670,10440,10910,1.81,0.56,5611,11670,17890,8143,10440,18380,6113,14820,10910,750.3,5370,5339,2800,3282,5143,1649,4071,4519
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer,11610,10290,10430,1.92,0.51,5507,11610,17100,8406,10290,18030,6447,14970,10430,1419,7832,7683,4714,5762,7343,2688,7009,5891
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer,10830,9550,9984,2.01,0.45,5344,10830,15960,7996,9550,16420,6177,13500,9984,1295,7070,6928,3987,4763,6627,2245,6319,5561
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer,10770,9369,9132,2.27,0.38,5306,10770,15810,7852,9369,16890,6177,13790,9132,1166,6541,6335,3513,4584,6024,1765,6200,4696
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer,10660,9292,9331,2.64,0.31,4985,10660,15920,7849,9292,16410,6023,13690,9331,1043,6423,6270,3522,4436,6153,2043,5908,5116
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer,10430,9122,9501,1.67,0.61,4279,10430,16590,6967,9122,16730,4644,13790,9501,673.5,4775,4821,2636,2994,4890,1521,3519,4502
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer,10420,9577,8963,3.13,0.25,5384,10420,16060,7853,9577,17120,6416,13730,8963,310.7,2628,2509,1079,1582,2433,569.5,2465,2135
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer,10200,8772,9250,2.27,0.37,4888,10200,15640,7525,8772,15890,5723,13040,9250,888.5,5629,5440,3001,3684,5394,1715,5039,4405
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer,10190,8083,8784,1.98,0.45,5764,10190,15640,7682,8083,14980,6122,12130,8784,1881,8790,8930,4876,6152,7858,2390,8045,5899
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer,9968,8225,8591,2.56,0.31,5403,9968,15460,7614,8225,15610,6022,12070,8591,1250,6663,6630,3464,4355,6076,1612,6313,4412
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer,9922,8546,9030,2.87,0.26,4612,9922,14770,7353,8546,15310,5847,12840,9030,1190,7014,6963,4170,5269,6562,2396,6838,5500
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer,9802,7712,7269,3.08,0.25,5871,9802,15070,7638,7712,14220,5837,11630,7269,985.7,5599,5304,2853,3610,4692,1216,5407,3339
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer,9710,8348,9307,1.45,0.73,4227,9710,14830,6683,8348,14830,4541,12370,9307,944.2,5659,5700,3411,3604,5582,2254,3962,4948
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer,9636,8288,8095,2.31,0.34,4691,9636,14180,7055,8288,15110,5504,12270,8095,970.8,5710,5414,2909,3778,5188,1421,5232,4036
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer,9466,8788,8464,1.91,0.45,4079,9466,15160,6462,8788,16210,4650,12960,8464,620.5,4004,3947,2059,2555,3927,1222,3314,3822
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer,9373,8404,8949,1.99,0.42,4773,9373,14370,7142,8404,14990,5409,11790,8949,781.1,4550,4369,2538,2943,4363,1577,3796,3611
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer,9120,7086,7517,2.84,0.27,6317,9120,14180,6759,7086,12500,6121,11860,7517,490.1,3286,3168,1459,1910,2799,812.1,2880,2463
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer,9117,7981,8127,2.09,0.38,4327,9117,13550,6470,7981,14910,4979,11730,8127,661.1,5054,4764,2726,3367,4616,1572,4203,3834
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer,9022,7514,6961,1.99,0.41,4604,9022,13400,6520,7514,14200,5390,11700,6961,1062,7227,6532,3429,5253,6170,1503,7943,4083
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer,9006,7949,7912,2.3,0.32,4305,9006,13220,6565,7949,14550,5061,11610,7912,645.5,4995,4676,2641,3259,4586,1486,4260,3819
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer,8763,7518,7759,2.25,0.33,4073,8763,13350,6422,7518,13580,4866,11430,7759,762.4,5015,4805,2781,3331,4715,1593,4593,4021
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer,8588,7544,7540,1.88,0.43,4713,8588,13480,6128,7544,14060,5019,11900,7540,1138,6365,5916,2820,4401,5486,1215,6265,3972
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer,8385,7268,7274,2.58,0.27,4320,8385,13240,6276,7268,13400,5573,11370,7274,1050,6251,6411,3419,4353,5860,1527,6325,3802
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer,8366,7270,7816,2.09,0.36,4287,8366,12770,6284,7270,13150,4911,10600,7816,1065,6042,6054,3361,4053,5650,1858,5527,4759
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer,8363,7995,7008,7.48,0.1,4426,8363,12970,6632,7995,14070,5672,11460,7008,217.4,1950,1843,838.1,1101,1647,347,2275,1426
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer,8281,7431,7099,2.36,0.3,3900,8281,12120,6369,7431,13180,4853,10840,7099,563.7,4275,4175,1881,2566,3937,805,4272,2869
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer,8186,7063,7125,2.86,0.23,4425,8186,12670,6191,7063,12850,5226,10700,7125,698.2,4719,4541,2205,3191,4143,930.4,4770,2649
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer,8008,7331,7037,2.93,0.21,4017,8008,12240,5744,7331,13230,4610,10720,7037,406.5,3398,3048,1479,1994,3006,767.7,2979,2343
SeqBias:_GA-repeat,7839,6717,7386,1.23,0.9,3904,7839,11150,5686,6717,11090,4098,9510,7386,780.7,4179,4084,2842,3360,4272,2156,3391,3819
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer,7818,7150,7180,2.27,0.3,3917,7818,12250,5806,7150,13210,4417,10770,7180,487.9,3198,3002,1208,1782,2962,580.6,2778,2522
SeqBias:_TA-repeat,7695,6896,7434,1.45,0.68,3753,7695,11220,5976,6896,11980,4445,9850,7434,2357,12660,12730,7378,9631,12070,3590,12230,10210
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer,7635,5907,5921,1.93,0.38,4054,7635,11640,5869,5907,11260,4526,8793,5921,1427,6147,6114,3306,4397,5503,1410,5846,4030
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer,7599,6279,6543,2.56,0.24,3421,7599,11210,5481,6279,11690,4360,9684,6543,625.1,4173,4138,2267,2866,4002,1288,3992,3311
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer,7500,6807,7155,1.61,0.53,3763,7500,11930,5443,6807,12200,3880,9685,7155,471.1,3063,2941,1717,1923,3106,1037,2284,2606
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer,7438,6640,5970,3.99,0.14,3563,7438,11380,5850,6640,12410,4583,10140,5970,471.8,3618,3316,1604,2335,3113,780.8,3698,2319
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer,7344,6454,6143,3.74,0.15,3776,7344,11560,5969,6454,12510,4576,9635,6143,826.1,4072,4026,1902,2558,3445,728.6,4142,2656
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer,7326,7260,6213,3.15,0.18,4493,7326,11450,5712,7260,13070,5144,10830,6213,822,3881,3584,1170,2275,3145,367.5,4233,2303
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer,7269,5678,5919,2.1,0.33,4401,7269,11530,5678,5609,10510,4460,8683,5919,1167,5386,5627,2973,3832,4845,1261,5137,3710
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer,7265,6568,6075,3.42,0.16,3437,7265,11170,5234,6568,12130,4350,9471,6075,219.4,2113,1866,831.7,1264,1820,402.3,1925,1489
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer,7165,6299,6197,2.02,0.34,3002,7165,10790,4905,6299,11530,3568,9596,6197,403,3228,3075,1551,1928,3046,844.3,2616,2519
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer,7001,5789,6363,1.59,0.53,3207,7001,10530,4887,5789,10760,3654,8728,6363,771.7,4459,4503,2371,2808,4196,1170,3846,3399
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer,6938,6044,5899,2.41,0.25,3351,6938,10320,5162,6044,10790,3977,8420,5899,746.2,4307,4261,2336,3047,4076,1153,4017,3134
Unknown2/Drosophila-Promoters/Homer,6749,6160,6031,1.79,0.41,2994,6749,10510,4767,6160,11340,3552,8936,6031,341.9,2547,2493,1088,1409,2369,640.9,1956,2091
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer,6671,5758,6084,1.64,0.48,3043,6671,10770,4507,5758,11090,3221,8801,6084,255,2533,2467,1040,1222,2365,509.1,1721,1950
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer,6655,5963,6039,1.86,0.37,3153,6655,10140,4982,5963,10920,3745,8868,6039,922.2,5826,5654,3067,4106,5181,1340,5897,3764
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer,6654,5772,6046,1.67,0.46,3341,6654,10180,4938,5772,10350,3877,8546,6046,1039,5660,5775,3275,4059,5375,1529,5503,3650
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer,6524,5687,5588,2.18,0.28,2874,6524,10060,4551,5687,10780,3365,8891,5588,269.6,2503,2273,1081,1368,2317,474.6,2077,1905
SeqBias:_CA-repeat,6523,5652,6101,1.26,0.82,2812,6523,9830,4373,5652,10240,3012,8362,6101,559.9,3903,3896,2022,2392,3840,1226,2680,3753
CHR/Cell-Cycle-Exp/Homer,6411,5556,5560,2.07,0.3,3205,6411,9359,5019,5556,10150,3715,8271,5560,1040,5687,5773,3426,4186,5437,1561,5758,3780
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer,6306,5503,5467,2.32,0.24,3266,6306,9650,4957,5503,9940,3699,7784,5467,756.3,4090,4048,2379,2899,3888,1196,3690,3159
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer,6256,5737,5492,2.7,0.19,3139,6256,9534,4828,5737,10360,3968,8347,5492,475,3076,2980,1556,1925,2817,763.7,2864,2327
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer,6109,5401,5849,1.53,0.53,2629,6109,9814,4293,5401,9896,2922,8065,5849,520.8,3559,3345,1862,1980,3324,1050,2425,2958
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer,6085,5138,5513,1.36,0.69,2400,6085,9828,3994,5138,9888,2545,7900,5513,408.1,2877,2833,1437,1589,2987,790.6,1824,2397
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer,6048,5457,5591,1.72,0.41,2895,6048,9565,4495,5457,10010,3264,8113,5591,904.1,5533,5512,2935,3780,5001,1278,5398,3633
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer,6008,4889,5182,4.61,0.11,3315,6008,10040,4854,4889,9448,4364,8387,5182,799.9,4403,4496,2303,3014,4000,916.7,4398,2346
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer,5997,4524,4669,1.63,0.45,3119,5997,9443,4447,4524,8776,3174,7070,4669,1094,4880,4830,2626,3284,4396,1152,4124,3186
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer,5984,4847,5034,1.85,0.35,2853,5984,8875,4179,4847,8820,3258,7566,5034,781.9,4679,4681,2526,3121,4129,1169,4495,3227
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer,5857,5059,5214,1.35,0.69,2185,5857,9203,3802,5059,9347,2466,7678,5214,307.8,2832,2789,1359,1557,3041,700.8,1871,2633
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer,5833,5371,5069,2.91,0.16,2772,5833,9214,4305,5371,10240,3474,7720,5069,225.7,1828,1578,790.3,1081,1620,324.1,1552,1350
Tal1,5810,5191,5194,1.69,0.41,2386,5810,9370,3767,5191,9652,2668,7830,5194,139,1757,1746,694.5,931.7,1754,405.2,1221,1472
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer,5614,4932,5368,1.41,0.61,2377,5614,9127,3780,4932,9376,2563,7674,5368,329.9,2682,2686,1381,1450,2648,672.1,1732,2464
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer,5425,4845,4801,1.83,0.33,2460,5425,8427,3935,4845,8889,2805,7024,4801,458.5,2961,2925,1492,1958,2701,677.5,2674,2029
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer,5410,4795,4916,2.01,0.28,2561,5410,8742,4088,4795,9273,2999,7137,4916,422.3,2759,2750,1449,1767,2587,707.4,2561,2178
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer,5401,4525,4499,2.8,0.16,2663,5401,7910,3984,4525,8438,3223,6619,4499,676.4,3414,3439,1862,2318,3077,1029,3538,2490
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer,5382,4908,4881,2.67,0.17,2576,5382,8147,4286,4908,8673,3264,7041,4881,627.1,3771,3654,2146,2672,3349,1256,3409,3094
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer,5306,4660,4589,1.53,0.5,2044,5306,8601,3515,4660,8594,2281,7414,4589,273.5,2370,2269,1006,1261,2236,461,1549,1944
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer,5272,5286,4573,3.8,0.11,2848,5272,8595,4079,5286,9434,3630,7842,4573,248.8,1767,1459,562.8,953.9,1314,239.7,1646,1034
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer,5165,4756,4706,2.02,0.26,2522,5165,8133,3714,4756,8919,2806,7105,4706,250.9,1891,1817,897,1004,1762,520.4,1554,1651
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer,4963,4491,4464,2.24,0.21,2519,4963,7631,3685,4491,8455,2801,6649,4464,263.7,1846,1854,864.9,1020,1745,499.6,1596,1589
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer,4955,4111,4460,1.37,0.61,1956,4955,8116,3189,4111,8089,2134,6297,4460,382.1,2465,2498,1240,1250,2342,610.7,1591,2048
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer,4952,4024,4330,1.71,0.36,2490,4952,8207,3391,4024,7564,2622,6334,4330,247.6,1927,1848,758.5,989,1708,324.9,1295,1195
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer,4892,4190,4228,2.15,0.22,2428,4892,7500,3770,4190,7833,2784,6387,4228,702.6,3691,3702,1966,2442,3449,1138,3247,2956
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer,4788,3447,3610,3.19,0.14,3046,4788,8197,3447,3222,6212,3222,5565,3610,82.32,711.4,715,283.5,376.7,624.8,125.8,597,502.6
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer,4707,3725,3908,1.68,0.36,2251,4707,7471,3398,3725,7332,2406,5863,3908,735.2,3672,3594,1899,2286,3364,979,2872,2673
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer,4696,4022,4288,1.33,0.66,1849,4696,7529,2904,4022,7840,1973,6441,4288,245.3,2314,2263,1037,1163,2255,537,1487,2194
Unknown4/Arabidopsis-Promoters/Homer,4695,4170,4042,1.65,0.37,2364,4695,6826,3583,4170,7377,2723,6062,4042,795.8,4396,4218,2475,2969,3879,1250,3984,2822
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer,4674,3678,3582,1.91,0.27,2243,4674,6369,3430,3678,6977,2776,5806,3582,742.2,4491,4364,2280,2963,3884,974.2,4651,2936
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer,4674,4461,3839,2.75,0.15,2168,4674,7574,3503,4461,8325,2717,6497,3839,117.8,1168,1062,448.6,630.2,1098,230.9,1032,971.4
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer,4672,3590,3443,1.69,0.35,2619,4672,7359,3590,3375,6642,2569,5559,3443,976.4,4094,4048,2103,2715,3606,821,3590,2671
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer,4582,4032,4124,1.38,0.59,1893,4582,7383,2954,4032,7712,2011,6347,4124,177.4,2088,2089,883.3,1030,2010,388.4,1321,1902
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer,4580,3739,3753,2.02,0.24,2503,4580,7357,3739,3671,7348,2835,5856,3753,891.9,3897,3943,1997,2601,3442,855.1,3524,2686
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer,4558,3831,3823,1.79,0.31,2296,4558,7920,3184,3831,7287,2390,6063,3823,132.1,1339,1159,456.2,660.9,1205,181.9,958.7,792.9
Sp1(Zf)/Promoter/Homer,4503,3542,3251,3.13,0.12,2979,4503,6737,3542,2821,6120,3120,5797,3251,2335,8148,8530,2916,5782,6923,851.6,11130,5344
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer,4427,3866,3809,1.9,0.26,2142,4427,6932,3254,3866,7088,2271,5803,3809,198,1488,1443,628.7,747.4,1322,414.4,1095,1274
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer,4295,3832,3358,3.4,0.11,2269,4295,6655,3601,3832,6971,2870,5600,3358,311,1943,1850,1037,1375,1722,466.3,2191,1177
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer,4226,3440,3059,2.61,0.16,2780,4226,6846,3440,3014,6370,2571,4832,3059,258.7,737,885.7,404.2,499.1,846.9,110,914.7,719.4
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer,4121,3424,3555,1.81,0.27,1682,4121,6250,2829,3424,6400,2115,5426,3555,267.2,1833,1654,867,1132,1871,429.8,1593,1514
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer,4090,2840,3190,1.76,0.3,2190,4090,6944,2631,2840,5570,2301,4790,3190,71,724.1,715.9,266.8,314.3,623.9,71.89,426.6,475.4
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer,4082,4038,3570,3.19,0.1,1915,4082,6017,3299,4038,7126,2419,6021,3570,275.4,2219,1998,973.3,1345,1935,559.9,2050,1646
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer,4064,3541,4004,1.31,0.65,1559,4064,6330,2820,3541,6596,1861,5383,4004,602.5,4020,3761,2141,2382,3670,1039,2892,2952
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer,3931,3744,3459,1.68,0.32,1668,3931,6443,2822,3744,7024,1928,5318,3459,159.5,1443,1438,752.5,825.1,1521,373.4,1047,1271
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer,3792,3303,3030,2.97,0.1,1733,3792,5483,3303,3222,6564,2071,4887,3030,289.1,1527,1547,848,1002,1445,385,1344,1225
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer,3789,2649,2764,3.11,0.11,2341,3789,6352,2387,2649,5244,2346,4356,2764,76.23,512.4,573.7,214.8,239.9,455,91.59,447.1,380.2
SFP1/SacCer-Promoters/Homer,3745,3142,2735,3.67,0.08,1697,3745,5616,2777,3142,6327,2266,4841,2735,223.6,1762,1591,917.1,1230,1620,320.9,1843,925.1
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer,3676,2450,2834,1.74,0.28,2090,3676,6474,2366,2450,5140,2072,4445,2834,68.93,645.2,644.5,228.2,282.9,580.3,73.82,412.4,456.2
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer,3653,2914,2645,2.93,0.11,1861,3653,5924,2489,2914,5462,2181,4360,2645,97.93,630.2,692.4,267.3,318.4,598.4,123.2,524,481
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer,3651,3169,3188,1.35,0.56,1460,3651,5828,2396,3169,5930,1626,4977,3188,393.8,2722,2612,1386,1687,2740,781.3,2061,2140
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer,3612,3279,2855,3.72,0.08,1923,3612,5723,2611,3279,6299,2228,4902,2855,85.26,828.7,700.9,254.2,410.6,594.9,157,770.1,560.5
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer,3607,3193,2957,1.53,0.38,1483,3607,5781,2458,3193,6251,1667,4962,2957,129.1,1324,1255,595,771.1,1345,232.5,997.9,1036
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer,3495,2390,2812,1.73,0.28,2032,3495,6274,2349,2390,4998,2066,4209,2812,64.1,607.9,597,216,272.5,556.6,65.26,361,436.5
Initiator/Drosophila-Promoters/Homer,3322,2789,2872,1.32,0.57,1288,3322,5490,2084,2789,5544,1240,4451,2872,298.5,1970,1879,969.7,1139,1891,486.7,1286,1416
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer,3315,2679,3031,1.39,0.48,1476,3315,5275,2241,2679,5143,1548,4394,3031,370.4,2117,2115,1129,1131,1913,456.6,1511,1447
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer,3312,2634,3035,3.53,0.08,1950,3312,6113,2634,2591,5098,2660,4835,3035,580.5,2828,3053,1515,1815,2769,584.6,2700,1742
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer,3235,2651,2811,1.69,0.27,1557,3235,5636,2108,2651,5371,1641,4258,2811,65.86,606.1,641.3,251,288.2,602.1,130.2,352.6,515.9
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer,3192,3025,2413,2.82,0.1,1735,3192,4889,2311,3025,5931,2009,4502,2413,12.85,297.3,283,71.43,152.6,260.7,22.01,275.5,219.9
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer,3158,2767,2880,1.47,0.4,1399,3158,5041,2320,2767,5357,1627,4224,2880,589.8,3518,3437,1834,2278,3268,726.2,3374,2088
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER,3156,2517,2974,5.47,0.05,1859,3156,5631,2517,2453,5096,2488,4688,2974,469.2,2488,2611,1385,1735,2366,562.4,2565,1420
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer,3114,2557,2428,2.12,0.15,1494,3114,4929,2054,2557,4871,1626,3943,2428,142.5,1095,1020,481.1,688.6,984.4,199.3,967.5,686
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer,3071,2723,2707,1.59,0.31,1413,3071,4928,2162,2723,5179,1536,4322,2707,346.1,2076,2118,1131,1361,1966,469,1959,1436
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer,3006,2727,2404,1.87,0.2,1457,3006,4565,2266,2727,4976,1663,3987,2404,219.4,1553,1492,851.8,971.2,1431,314.1,1359,1063
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer,2958,2327,2490,1.55,0.32,1294,2958,4386,1978,2327,4545,1449,3861,2490,285.7,1566,1603,828.6,855.9,1376,305,1109,1044
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer,2948,2609,2210,4.7,0.05,1489,2948,4630,2051,2609,4946,1796,3887,2210,199.8,1346,1205,661.7,943.4,1115,253.2,1482,665.7
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer,2947,2173,2350,1.77,0.22,1557,2947,4906,2051,2173,4524,1581,3791,2350,224.3,1239,1341,615.7,739.6,1339,248.7,1007,984.4
TATA-Box(TBP)/Promoter/Homer,2889,2406,2589,1.39,0.44,1263,2889,4694,2022,2406,4872,1338,3968,2589,444.1,2517,2641,1342,1543,2512,646.8,2050,1745
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer,2878,2256,2192,1.62,0.28,1369,2878,4784,1846,2256,4524,1349,3796,2192,49.55,614.7,567.1,213.3,250.3,569.2,72.94,320.5,383.4
E-box/Drosophila-Promoters/Homer,2864,2411,2332,2.53,0.1,1208,2864,4379,2194,2411,4851,1672,3663,2332,99.16,863.3,854.6,353.6,488.1,858.7,163.5,840.7,634.5
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer,2753,2330,2216,2.5,0.1,1222,2753,4243,2220,2330,4634,1587,3896,2216,229,1795,1676,926.4,1196,1682,351.8,1947,1144
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer,2671,2134,2339,1.68,0.23,1315,2671,3854,2134,2071,3883,1640,3592,2339,1045,5143,5217,2933,3913,4901,1494,5251,4027
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer,2650,2508,2283,2.49,0.1,1273,2650,4003,2084,2508,4763,1550,3613,2283,89.01,728,668.6,336.3,384.2,650.3,173.8,611.7,539.7
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer,2648,2628,2155,2.17,0.13,1434,2648,4140,1987,2628,5046,1683,3935,2155,6.848,195.7,160.1,39.61,92.21,159,13.77,155.1,171.7
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer,2617,2138,1983,1.47,0.34,855,2617,4395,1545,2138,4721,910.4,3540,1983,1.933,140.3,159.8,7.577,9.817,243,0.102,33.47,254.3
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer,2616,2311,2023,2.01,0.14,1136,2616,4123,1918,2311,4346,1356,3578,2023,241.2,1487,1508,722.6,1017,1482,278.7,1492,1033
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer,2600,2337,2119,1.36,0.44,937,2600,4304,1673,2337,4597,1045,3710,2119,76.22,825.5,914.5,380.2,340.9,953.9,150.5,475,850.7
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer,2552,2341,2035,1.89,0.16,1117,2552,3972,1795,2341,4514,1273,3553,2035,56.66,710.9,663.2,263.9,465.3,709,160.2,512,674.8
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer,2528,2379,2028,2.28,0.11,1218,2528,4177,1982,2379,4297,1448,3363,2028,29.13,458.9,411.5,180.6,210.9,414.7,85.47,290.2,337.4
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer,2468,1874,1810,2.27,0.11,1405,2468,3649,1853,1874,3802,1436,3126,1810,162.8,810.3,753.6,413.3,543.2,707.2,180.4,790.8,528.8
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer,2462,2211,1966,3.94,0.05,2225,2462,3819,2211,1620,2960,1966,3253,1738,99.04,483.4,441.4,182.1,264.3,390.9,96.85,481,366.5
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer,2445,1926,2028,2.85,0.07,1331,2445,3739,1926,1832,4108,1503,3498,2028,290.7,1986,1981,717.5,1172,1730,262.6,2313,1256
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer,2438,2164,1980,1.35,0.44,887.2,2438,4213,1559,2164,4387,984.1,3633,1980,63.53,816.4,877.8,324.7,320.2,854.8,120,434.6,792.4
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer,2426,2331,2048,4.37,0.05,1243,2426,3653,1797,2331,4240,1557,3405,2048,215,1434,1394,678,863.4,1206,319,1360,858.3
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer,2416,2087,1845,2.48,0.09,1110,2416,3683,1774,2087,4110,1267,3374,1845,105,1064,1009,458,679.8,947.3,196.7,1072,739.7
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer,2397,1897,1778,3.72,0.05,1068,2397,3534,1637,1897,3669,1375,2928,1778,253.9,1208,1096,623.5,820.4,1098,329.6,1206,865.6
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer,2373,2014,2405,1.15,0.79,764.5,2373,4290,1458,2014,4220,867.8,3398,2405,259,1901,1964,959.8,972.9,1960,588.1,1095,1715
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer,2365,2195,1857,1.71,0.2,997.6,2365,3778,1641,2195,4087,1139,3440,1857,277.2,1755,1848,867.3,1204,1756,335.4,1778,1251
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer,2359,1623,1727,2.47,0.09,1173,2359,3470,1539,1623,3158,1228,2841,1727,216.7,988.8,1027,491.1,650.1,961,263.1,1002,806.2
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer,2359,1671,1608,1.93,0.15,1258,2359,3568,1462,1671,3492,1075,2949,1608,121.6,595.7,587.8,249.1,363.3,589.6,92.84,513.5,543.1
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer,2339,2235,1942,2.93,0.07,1084,2339,3524,2075,2235,4238,1400,2959,1942,159.6,975.6,1085,523.8,629.1,880.8,261.4,887.1,877.9
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer,2326,1911,2065,1.32,0.46,946.3,2326,3789,1618,1911,3759,1010,3039,2065,193,1413,1448,732.7,771.8,1333,271.5,925.8,1000
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer,2315,1927,2018,1.67,0.21,997.1,2315,3648,1556,1927,3813,1111,3186,2018,335,1796,1812,1015,1250,1657,443.6,1845,1236
"NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber_et_al.)/Homer",2297,1870,1661,2.73,0.07,1232,2297,3340,1724,1870,3362,1363,3108,1661,54.12,769.8,690.4,280.2,451.6,745.3,106.8,647.2,576.5
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer,2122,1704,1506,3.53,0.05,1166,2122,3099,1610,1704,3669,1261,2929,1506,281.9,1274,1283,600.9,888.5,1012,232.1,1228,795.4
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer,2087,1943,1868,1.76,0.17,911.8,2087,3380,1528,1943,3844,1049,3024,1868,96.83,743.6,669,381.8,441.9,654.6,199.1,563.2,641.4
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer,2058,1602,1573,1.34,0.4,1060,2058,3534,1602,1494,3188,1076,2658,1573,640.8,2633,2628,1362,1798,2397,524.7,2199,1736
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer,2052,1651,1636,1.35,0.39,780.8,2052,3153,1378,1651,3344,860.3,2757,1636,287.8,2040,1977,937.3,1361,1755,348,1859,1166
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer,2009,1860,1754,1.97,0.12,1053,2009,3217,1584,1860,3599,1291,2841,1754,138.9,1002,870.8,542.1,596,922.9,239.3,909.2,721.3
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer,1971,1773,1735,1.29,0.47,793.2,1971,3190,1501,1773,3364,931,2865,1735,298.6,1816,1869,967.7,1132,1811,370.3,1584,1192
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer,1947,1285,1430,4.33,0.04,1247,1947,3382,1047,1285,2468,1419,2043,1430,32.74,223.7,267.8,114.2,139,172.8,45.84,193.1,150
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer,1942,1637,1562,1.45,0.29,778.5,1942,3475,1260,1637,3337,795.6,2692,1562,73.31,737.3,704.3,318.6,366.3,717.7,115.8,559.7,556.9
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer,1921,1336,1397,1.43,0.3,1173,1921,3137,1336,1261,2784,865.8,2349,1397,43.57,126.8,165.9,29.17,18.77,185.9,0.258,95.34,174.6
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer,1898,1589,1595,1.44,0.29,725.2,1898,3060,1404,1589,3234,1044,2651,1595,247.9,1682,1577,805.5,1018,1525,273.7,1485,891.4
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer,1871,1575,1419,1.8,0.14,770.8,1871,3047,1208,1575,3372,818.4,2591,1419,0.5792,105.3,111.1,16.45,22.17,91.72,3.989,24.35,82.19
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer,1867,1259,1317,4.22,0.04,1165,1867,3346,910.2,1259,2635,1310,2074,1317,27.55,269.9,263,117.5,130.8,205,31.71,220.7,137.1
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer,1844,1527,1329,1.47,0.26,742.7,1844,2740,1357,1527,3029,894.8,2518,1329,284,2111,1966,978.3,1393,1948,383.9,2003,1059
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer,1821,1397,1234,1.28,0.45,500.4,1821,3305,996.8,1397,3487,416.1,2544,1234,1.00E-05,45.29,71.14,6.00E-06,3.60E-05,127.3,0,0.002029,152.5
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer,1820,1194,1301,4.61,0.04,1179,1820,3228,906.8,1194,2407,1292,1944,1301,27.39,269.2,262,131.2,151.3,224,51.57,210.9,166.4
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer,1795,1135,1228,3.03,0.05,1024,1795,2603,1062,1135,2267,924.3,2199,1228,258.3,959.2,1044,530.7,666.4,960.8,253.2,1069,802.2
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer,1704,1410,1455,1.42,0.29,748.7,1704,2790,1282,1410,3044,901.5,2505,1455,271.1,1575,1559,886.9,1043,1536,346,1460,1031
YY1(Zf)/Promoter/Homer,1692,1719,1624,3.75,0.04,1388,1692,2538,1719,1015,2232,1624,1945,1292,999.3,3039,3253,2271,3021,2959,934.6,3767,2538
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer,1660,1128,986.9,1.69,0.15,740.2,1660,2385,1128,1109,2577,699,1967,986.9,19.45,125.7,178.6,19.92,20.93,182.8,0.05551,126.6,119.8
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer,1651,1301,1092,1.38,0.31,478.5,1651,2892,963.2,1301,3046,484.9,2202,1092,0,0.9607,7.799,0,0,25.71,0,0,30.72
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer,1605,1337,1164,2.14,0.08,683.6,1605,2507,1034,1337,2924,928.7,2284,1164,38.98,355.5,330.4,144.9,231,337.8,80.82,285.6,294
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer,1554,1277,1240,2.09,0.08,871.4,1554,2437,1277,1148,2411,1087,2255,1240,395,1783,1860,678.6,1112,1574,246.3,2113,1275
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer,1549,1312,1261,1.96,0.09,791.8,1549,2161,1258,1312,2736,933.5,2037,1261,184.5,1430,1239,734.6,1084,1271,291.4,1473,787.2
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer,1487,1208,1357,1.17,0.63,351.4,1487,2692,768.6,1208,2815,354,2330,1357,37.65,697.3,662.7,201.3,223.4,726,53.72,268.9,553
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer,1464,1546,1236,1.59,0.16,647.6,1464,2650,1140,1546,3119,737,2342,1236,1.195,124.8,119.6,23.27,33.54,144.1,6.509,46.41,186.8
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer,1456,1222,1121,1.95,0.09,602.6,1456,2291,1031,1222,2576,779.7,2279,1121,106.5,538.8,465.6,183.2,303.3,445.4,97.19,457,386.1
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer,1397,1178,1158,1.93,0.09,620.9,1397,2330,1072,1178,2757,734.1,1926,1158,56.26,469,441.4,237.9,284.4,487.8,132.7,361.7,391.4
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer,1360,1149,976.6,2.05,0.08,633.5,1360,2052,844.6,1149,2215,651.5,1702,976.6,115.3,744.8,727.4,366.1,423.4,666,181.8,727.6,442.8
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer,1306,1113,971.7,1.46,0.21,517.3,1306,2018,969.8,1113,2267,601.1,1836,971.7,194.2,1477,1386,709.6,898.7,1333,239.1,1426,682.2
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer,1303,983,972.3,1.38,0.26,481.8,1303,2108,827.9,983,2194,488.3,1846,972.3,42.53,480.4,444.2,252.6,245.5,460.7,91.32,344.2,344.8
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer,1260,832.2,728.5,3.29,0.03,665.5,1260,1622,832.2,830.7,1687,537.1,1230,728.5,59.73,371.2,385.1,209.7,252.1,360.2,76.41,516.1,264.5
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer,1252,893.9,600.9,2.7,0.04,957,1252,1909,893.9,528.9,1514,593,917.2,600.9,246.2,417.2,596.7,297.8,355.1,451.9,32.58,633.8,332.9
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer,1239,767.8,756.5,2.76,0.04,752.1,1239,1768,693,767.8,1274,547.4,1338,756.5,300.2,893.4,1014,524.7,656.8,953.8,228,1025,762.6
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer,1168,891.6,920.7,1.29,0.33,428.3,1168,1870,784.5,891.6,1970,492.2,1712,920.7,93.86,796.6,823.4,339.8,467.1,681.3,141.3,613.1,526.7
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer,1166,645.4,653.7,2.88,0.04,743.9,1166,1648,636.1,645.4,1096,535.2,1165,653.7,285,909.1,970.8,513.7,601.5,891.6,200.1,1005,748
ETS(ETS)/Promoter/Homer,1142,1053,782.8,1.55,0.16,810.6,1142,1826,1053,595.5,1311,782.8,1290,754.5,684.2,1913,2174,1023,1572,1736,311.4,2065,1379
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer,1118,1120,867.2,2.14,0.06,524.1,1118,1941,835.1,1120,2301,618.2,1706,867.2,7.286,170.8,164.3,34.29,56.09,174.6,19.76,93.1,129.6
Unknown4/Drosophila-Promoters/Homer,1114,901.7,840.9,1.79,0.09,528.1,1114,1689,865.2,901.7,1801,558.6,1538,840.9,102.9,779.9,813.6,406,495.6,792.7,191.4,846.9,457.1
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer,1092,992.7,960.6,1.74,0.1,537.6,1092,1720,842.5,992.7,2035,545.2,1570,960.6,25.86,273.7,259.8,124.2,151.2,263.1,58.44,181.5,220.3
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer,1029,852,627.7,1.45,0.17,266.3,1029,1866,558.1,852,2318,251.4,1437,627.7,0,0.000725,0.001533,0,0,3.166,0,0,8.536
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer,1014,937.2,930.2,1.29,0.3,401.6,1014,1768,651.2,937.2,2065,434.3,1806,930.2,47.68,493.3,505.4,215.5,207.1,582.2,33.32,362.9,417
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer,987.6,951.9,852.8,1.49,0.15,424.6,987.6,1856,848.5,951.9,2121,593.8,1486,852.8,44.68,262.2,312.1,126.2,127,292,71.39,180.2,251.9
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer,971.9,788.1,615.9,1.36,0.22,262.3,971.9,1786,565.3,788.1,2070,257.4,1391,615.9,0,0.004724,1.503,0,0,4.713,0,0,13.94
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer,964.2,855.8,675.2,2.8,0.03,427,964.2,1617,670.4,855.8,1880,447.6,1489,675.2,86.05,351.5,374.8,119.3,239,325.6,67.81,444.5,291.2
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer,949.9,912.8,658.1,1.36,0.23,655.3,949.9,1579,912.8,505.4,1172,614.6,1215,658.1,616.1,2005,2174,1074,1506,1805,354.6,2013,1463
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer,914.4,711.8,640.9,1.54,0.12,345.1,914.4,1550,498.4,711.8,1705,360.1,1261,640.9,81.87,439.3,346.7,174.4,212,367.3,43.22,292.9,304.2
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer,892.2,620.5,611.3,1.55,0.12,408.7,892.2,1608,495.7,620.5,1393,365.3,1167,611.3,16.28,130.1,146.6,44.75,47.18,144.6,10.33,93.33,132.8
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer,842.8,746.2,629,1.68,0.09,477,842.8,1513,746.2,726.1,1683,463.8,1174,629,18.99,195.5,219.8,93.26,103.1,181.3,52.64,142.5,188.7
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer,826,568,662.2,2.22,0.04,421.3,826,1414,529.3,568,1297,396.6,1128,662.2,39.71,346.5,256.6,134,222.9,269.7,36.85,346.8,189.2
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer,801.7,698.4,668.2,1.44,0.14,257.9,801.7,1269,558.7,698.4,1346,370.6,1202,668.2,13.84,200.8,230.9,113.2,81.99,219.7,55.24,79.48,181.8
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer,773.8,926.9,821.4,3.97,0.02,355,773.8,1236,687.9,926.9,1504,503.7,1219,821.4,29.48,247.4,291.8,64.62,86.45,214,38.85,186,135.9
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer,770.1,718.9,580.6,1.63,0.09,294.4,770.1,1292,406.7,718.9,1492,277.4,1106,580.6,0.000508,15.07,8.927,0.4835,0.0674,16.23,3.381,1.40E-05,8.65
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer,762.1,686.8,727.9,1.89,0.05,382.5,762.1,1184,586.4,686.8,1442,411.8,1061,727.9,21.37,169.8,161.7,87.97,82.3,188.4,50.82,113.2,154.2
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer,756.8,727,650.2,2.2,0.04,709.4,756.8,1213,891.7,289.2,727,650.2,844.9,494.6,917.8,2661,2974,1103,1981,2215,244.6,3753,1848
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer,725.6,585.6,432.8,1.29,0.22,150.4,725.6,1346,380.6,585.6,1595,133,1036,432.8,0,0.00564,0.7553,0,0,7.92,0,0,10.94
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer,718.9,576.8,603.2,1.22,0.32,221,718.9,1243,484,576.8,1355,292.3,1186,603.2,66.72,555.9,486.2,249.5,267.2,510.2,70.37,395.5,274.7
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer,686.5,538.5,458.4,1.71,0.06,310.7,686.5,1052,455.1,538.5,1021,351.8,890.5,458.4,12.56,175.6,182.7,80.57,97.91,164,42.9,90.87,155.3
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer,677.2,475.6,437.9,1.28,0.22,196.1,677.2,997.6,418.5,475.6,1220,279.3,880.9,437.9,58.97,402.9,402.7,176.6,170.5,335,49.74,255,193.1
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer,671.1,538.7,489.9,1.25,0.27,193.3,671.1,1165,449.6,538.7,1259,241,1004,489.9,47.8,371.5,321.3,165.2,136,299.2,36.8,188.1,219.7
PCF/Arabidopsis-Promoters/Homer,656.6,652.6,536.4,1.45,0.12,305.6,656.6,1027,463.5,652.6,1322,356.1,1053,536.4,8.687,71.95,97.44,57.61,22.62,91.49,16.9,47.01,94.34
GFY(?)/Promoter/Homer,656.3,629.3,471.4,2.24,0.03,390.4,656.3,974.1,629.3,420,1090,471.4,781.8,446.4,495,1352,1491,723.5,891.3,1153,168.9,1458,760.5
GFY-Staf/Promoters/Homer,655.1,735.2,479.2,3,0.02,451.3,655.1,876.5,735.2,447.1,918.3,467.4,819.1,479.2,784.1,2062,2199,1236,1413,1720,369.9,2316,1210
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer,636.4,657.3,505.4,1.99,0.04,340.3,636.4,1105,538.4,657.3,1245,385.9,936,505.4,38.61,233,196.6,119.1,127,211,55.71,176.4,181.6
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer,620.6,558.2,454.4,1.93,0.04,285,620.6,903.9,359.1,558.2,1015,339.6,861.7,454.4,0.4492,23.34,17.62,9.778,1.239,17.55,0.9078,4.54,12.33
p53(p53)/Saos-p53-ChIP-Seq/Homer,620.6,558.2,454.4,1.93,0.04,285,620.6,903.9,359.1,558.2,1015,339.6,861.7,454.4,0.4492,23.34,17.62,9.778,1.239,17.55,0.9078,4.54,12.33
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer,609.9,624.7,538.3,1.73,0.06,240.5,609.9,1132,417.9,624.7,1296,324.9,1032,538.3,7.125,109.6,70.17,30.68,38.34,70.45,23,67.75,65.43
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer,603.3,556.7,521.9,2.49,0.02,261.9,603.3,988.6,508.5,556.7,1111,413,932,521.9,41.4,248.9,233.9,84.27,182.6,200.1,23.57,315.5,99.47
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer,560.6,353,236.5,1.31,0.17,120.8,560.6,932.3,353,313.9,939.3,102.3,692.8,236.5,0.000262,6.00E-06,0.2585,0,0,1.451,0,0,2.879
TOD6?/SacCer-Promoters/Homer,531.3,549.3,406.7,1.49,0.08,267.9,531.3,943.7,478.5,549.3,964.1,280.7,931.3,406.7,9.965,115.2,93.96,56.11,58.17,112.5,26.67,44.65,131.7
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer,529,430,346.6,3.63,0.01,217.3,529,685.5,350,430,970.7,273.7,629.6,346.6,2.254,40.69,53.5,18.61,37.58,43.2,14.13,67.99,44.43
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer,528.7,482.1,393.5,1.27,0.2,144,528.7,828.4,288.2,482.1,1070,214,802.3,393.5,21.4,320.3,320.5,148.4,184.4,315.1,27.55,271.5,138.3
TATA-box/SacCer-Promoters/Homer,528.5,469.3,336.2,1.24,0.23,175.1,528.5,823.8,339.6,469.3,993.1,172.1,859.5,336.2,68.47,460.7,472.2,155.2,262.1,442.8,29.55,424.2,306.1
SUT1?/SacCer-Promoters/Homer,521.8,436.3,328.4,1.06,0.82,136,521.8,839.5,259,436.3,1033,119.9,704.9,328.4,60.81,485.7,377.9,255.3,388.3,352.4,145.3,360.1,3.782
Unknown3/Drosophila-Promoters/Homer,510.1,399.5,480.4,1.88,0.04,220.2,510.1,802.5,386.1,399.5,881.9,307.2,683.6,480.4,14.01,205.4,133.5,81.6,88.21,168,31.51,134.9,168.8
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer,501.6,433.9,379.4,1.82,0.04,241,501.6,743,297,433.9,879.9,278.1,734.6,379.4,18.66,207.7,135.1,56.47,96.68,148.7,66.4,127.9,102.7
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer,493.7,375.9,321.3,1.34,0.14,227,493.7,1033,260.1,375.9,865.4,165.2,717.1,321.3,7.287,77.44,82.41,23.28,16.15,83.4,4.522,32.32,78.52
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer,466.2,391.4,408,1.11,0.52,95.22,466.2,967.4,269.2,391.4,1006,68.9,841.7,408,31.53,442.9,410.3,161.4,175.4,475.1,42.2,146.9,249.5
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer,462.3,380.1,462.5,1.07,0.73,38.89,462.3,1188,199.3,380.1,1155,33.8,828.2,462.5,9.704,392.3,391.5,47.93,66.58,374.6,0.2976,102.9,241.7
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer,444.7,330.2,288.8,1.64,0.05,260.7,444.7,823.7,279.4,330.2,724.8,174.4,562.6,288.8,0.5427,0.9422,1.622,0.04739,0.03661,7.966,0.4679,0.05153,8.463
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer,444.1,436.2,372.7,1.12,0.47,96.41,444.1,979.7,206.4,436.2,1096,78.55,861.9,372.7,12.29,286.5,264.4,77.75,99.71,305.1,7.302,130.6,91.04
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer,374.7,251.9,334.5,1.31,0.12,164.7,374.7,495.2,251.9,204.1,408,169.3,506.1,334.5,369.9,1820,1912,957.7,1338,1846,451.7,1849,1631
SeqBias:_A/T_bias,360.1,273,376.7,1.02,0.94,135.1,360.1,440.5,241.9,273,386,200.9,397,376.7,596.7,1710,1944,1414,1388,1731,934.3,1437,1545
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer,344.3,185,114.5,1.21,0.18,63.46,344.3,592.3,185,174.8,649.8,34.7,408.5,114.5,1.10E-05,8.30E-05,0.6955,0,0,3.855,0,0,9.011
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer,329.3,256,295.3,1.1,0.48,52.59,329.3,780.3,188.9,256,800.1,81.8,658,295.3,95.04,607.1,653.9,271.4,362,661.2,62.07,427,305.9
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer,315.6,313.5,237.4,1.16,0.26,72.64,315.6,646.5,166.1,313.5,811.3,82.47,684.2,237.4,3.368,109.7,99.48,18.42,33.49,125,2.086,26.62,40.86
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer,314.7,277.4,265.1,1.58,0.05,229.7,314.7,734.1,259.3,277.4,557.7,169,492.7,265.1,4.809,42.55,62.13,12.79,9.296,35.2,2.159,9.998,45.71
T1ISRE(IRF)/Ifnb-Exp/Homer,264.7,167.4,167.5,2.77,0.01,121.2,264.7,456.9,164.8,167.4,316.4,148.8,333.5,167.5,28.99,153,160.6,73.02,107.3,163.2,28.95,139.7,58.8
CRE(bZIP)/Promoter/Homer,263.3,141.6,40.57,1.28,0.1,193.1,263.3,353,141.6,12.55,161.4,40.57,105.5,30.97,40.36,7.018,24.78,1.816,0.6689,16.26,0,10.74,26.83
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer,258.7,182.9,87.51,1.26,0.11,77.69,258.7,389.7,182.9,101.6,378.3,42.06,265.1,87.51,2.021,0.1159,5.13,0,0,8.391,0,2.60E-05,14.08
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer,256.9,212.6,198.1,1.19,0.17,51.32,256.9,411.2,133.8,212.6,577.5,84.55,403.5,198.1,0.6334,93.92,90.71,26.67,26.84,105,2.338,38.94,35.02
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer,248.2,275.8,225.7,1.45,0.05,123.1,248.2,427.2,223.7,275.8,627.7,148.7,510.4,225.7,18.08,92.94,97.37,40.88,55.11,106.1,10.77,96.13,77.73
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer,233.2,162.1,155.2,1.1,0.37,24.76,233.2,453.2,105.1,162.1,492.6,33.73,484,155.2,30.69,261.9,278.3,113.5,160.9,345.8,17.93,135.4,178.7
E-box(HLH)/Promoter/Homer,232.6,189.4,98.93,1.51,0.03,128.5,232.6,301.5,189.4,85.21,289.4,98.93,194.7,87.81,60.01,112.3,153.6,26.98,55.48,145.5,0.7145,153.7,109.4
Unknown1/Arabidopsis-Promoters/Homer,230.6,212.8,168,1.38,0.05,53.64,230.6,388.7,185.4,212.8,430.9,82.22,344.1,168,18.63,128.5,133.9,78.63,99.42,140,32.37,122.3,89.53
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer,218.9,184.2,153.2,1.1,0.36,24.54,218.9,501.3,77.72,184.2,576.2,13.23,499.9,153.2,0.3235,60.85,44.64,5.474,4.946,73.12,0.001359,4.055,11.85
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer,186,118.2,90.66,1.36,0.05,27.8,186,248,105.3,118.2,343.7,33.16,218.4,90.66,8.026,88.28,72.01,20.05,25.05,43.25,11.51,42.62,49.85
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer,181.2,176.1,128.7,1.13,0.24,34.51,181.2,432.3,87.31,176.1,535.8,37.73,455.2,128.7,0.02053,25.07,18.34,0.386,0.8346,33.16,0.000451,0.03012,4.293
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer,147.5,156.4,138.2,1.21,0.09,24.39,147.5,321.1,156.4,128.4,353.5,77.18,237.5,138.2,3.903,55.77,45.79,17.16,15.04,43.24,8.229,12.87,44.48
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer,131,80.93,73.88,1.06,0.45,3.126,131,468.9,38.53,80.93,422.4,2.894,383.1,73.88,0,0.5567,0.156,0,0,1.076,0,0,1.966
EBNA1(EBV_virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer,129,171.7,148.7,2.43,0.01,46.82,129,249.3,120.3,171.7,283.3,148.7,214.4,122.9,13.93,110.5,80.95,45.49,55.96,93.32,20.16,91.66,82.7
SeqBias:_CG_bias,125.2,120.4,32.3,1.02,0.89,2.267,125.2,190.4,21.1,120.4,289.6,2.874,158.7,32.3,16.84,209.8,153.3,100.6,196.2,123.5,34.37,146.8,0
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer,120.4,127.3,66.47,1.1,0.24,66.91,120.4,278.4,127.3,23.58,144,51.04,188.1,66.47,422.7,1199,1332,648.1,887.6,1141,196,1057,862.9
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer,119.1,123.1,120.5,1.3,0.04,45.41,119.1,348.4,91.74,123.1,335.1,60.16,269.2,120.5,6.982,76.18,60.19,40.57,17.99,51.11,11.98,23.47,51.19
TATA-box/Drosophila-Promoters/Homer,116.8,100.5,83.47,1.32,0.05,88.48,116.8,216,76.03,100.5,268.8,51.38,196.4,83.47,18.6,150.2,150.9,58.52,78,133.1,13.72,128.8,66.93
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer,110.2,84.98,74.78,1.17,0.1,44.26,110.2,263.8,61.3,84.98,279.5,17.33,243.1,74.78,0.346,6.677,7.301,1.558,0.9145,8.321,0.6119,0.000263,6.31
SeqBias:_polyC-repeat,97,102.4,43.29,1,0.99,16.79,97,127.3,26.26,102.4,164.3,22.88,117.8,43.29,29.35,70.22,69.07,41.71,40.67,65.43,12.58,39.23,14.48
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer,73.62,22.28,67.08,1.16,0.06,38.96,73.62,79.17,45.6,12.12,22.28,29.71,67.08,71.72,178.1,655.6,769.8,374.1,465.1,686.4,134,650.9,663.3
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer,61.66,99.69,76.88,4,0,28.97,61.66,145.7,60.34,99.69,176.2,76.88,156.6,32.55,11.61,54.88,50.37,32.36,43.57,55.93,18.02,79.47,49.13
SeqBias:_polyA-repeat,56.21,70.82,57.13,1,0.99,30.46,56.43,56.21,76.63,70.82,53.29,57.13,54.23,71.54,76.26,292.1,336.4,280.6,265.8,324.6,222.4,254.4,261.2
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer,54.1,67.69,54.53,1.16,0.06,23.25,54.1,136.5,59.7,67.69,172.4,26.82,162.4,54.53,26.93,146.2,142.2,70,91.17,159.6,20.16,140.2,89.44
NRF1/Promoter/Homer,40.7,8.961,21.15,1.16,0.05,37.01,40.7,90.11,52.76,0.002481,8.961,21.15,39.06,3.647,224.6,341,506.1,63.79,243.1,297,0.002548,609.8,276.5
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer,40.67,9.296,11.42,1.03,0.46,1.90E-05,40.67,183.6,5.478,9.296,166.8,0,165.5,11.42,0,2.216,0.6593,0.000135,0,5.323,0,0,4.835
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer,37.78,16.99,3.514,1.08,0.11,0.2946,37.78,83.37,16.99,11.43,120.6,0.005012,59.79,3.514,0,0,0,0,0,8.00E-06,0,0,0.592
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer,26.68,35.08,30.01,1.22,0.02,18.18,26.68,54.57,35.08,33.58,89.73,14.18,58.94,30.01,12.49,81.53,55.38,28.85,41.93,66.09,15.62,57.44,30.33
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer,21.43,15.09,1.638,1.08,0.07,0.04795,21.43,71.74,8.599,15.09,115.1,1.00E-06,44.29,1.638,0,0,0,0,0,0,0,0,1.80E-05
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer,19.19,8.499,11.64,1.02,0.6,0,19.19,100,0.2006,8.499,105.5,0,76.57,11.64,6.879,118.6,150.2,19.58,49.5,144.3,0.1637,25.4,29.86
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer,19.03,3.837,0.6025,1.05,0.14,0.006076,19.03,72.29,3.837,0.2818,80.92,0,41.18,0.6025,0,0,0,0,0,0,0,0,0.000216
SeqBias:_GCW-triplet,18.48,10.63,7.157,1,1,0.05525,18.48,30.34,0.891,10.63,33.91,2.042,23.03,7.157,2.898,7.735,8.39,2.638,1.494,11.18,0.8375,3.651,3.891
Unknown5/Drosophila-Promoters/Homer,6.183,0.8453,4.747,1.02,0.23,0,6.183,34.3,0.3912,0.8453,70.45,0,45.66,4.747,0,0,0,0,0,0.000225,0,0,0
SeqBias:_C/A-bias,4.231,4.813,1.831,1,1,0.07822,4.231,13.78,0.1848,4.813,12.58,0.3681,16.41,1.831,0.3622,3.636,1.668,0.1182,1.88,0.4719,0.000897,0.000893,1.765
SeqBias:_CG-repeat,2.101,0.06554,0,1,0.37,0,3.087,2.101,0.001658,0.06554,7.315,0,28.33,0,151.1,1199,1135,731.4,1028,1185,379.3,1143,745.8
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer,0,0,0,0.67,0.22,0,0,0,0,0,0,0,0,0,0.2369,1.427,8.192,0.000492,0,13.87,0,0,22.5
E2F(E2F)/Cell-Cycle-Exp/Homer,0,0,0,0.66,0.02,0,0,0,0,0,0,0,0,0,9.208,14.7,21.5,7.599,11.87,19.03,4.071,1.256,42.6
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer,0,0,0,0.86,0.19,0,0,0,0,0,0,0,0,0,109.7,436.7,547.4,226.8,267.1,501.8,104.4,323,507.7
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer,0,0,0,0.96,0.24,0,0,3.00E-06,0.01629,0,0,0,4.90E-05,0,237.4,612.9,713.2,329.4,451,598.8,73.74,482.3,477.3
GFX(?)/Promoter/Homer,0,0,0,0.56,0,0,0,0,0,0,0,0,0,0,37.98,14.24,14.71,10.24,32.72,17,0.2123,29.56,18.42