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If you use plots from MultiQC in a publication or presentation, please cite:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

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About MultiQC

This report was generated using MultiQC, version 1.6

You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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MultiQC reports use JavaScript for plots and toolbox functions. It looks like you have JavaScript disabled in your web browser. Please note that many of the report functions will not work as intended.

Report generated on 2018-09-18, 10:54 based on data in:

/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt1_1f_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.csv
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt1_1f_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.log
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt1_1f_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.pdf
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt1_1g_wt.fastq_slamdunk_mapped_filtered_mutationrates_utr.csv
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt1_1g_wt.fastq_slamdunk_mapped_filtered_mutationrates_utr.log
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt1_1g_wt.fastq_slamdunk_mapped_filtered_mutationrates_utr.pdf
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1a_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.csv
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1a_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.log
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1a_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.pdf
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1b_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.csv
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1b_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.log
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1b_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.pdf
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1c_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.csv
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1c_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.log
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1c_cr.fastq_slamdunk_mapped_filtered_mutationrates_utr.pdf
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1d_wt.fastq_slamdunk_mapped_filtered_mutationrates_utr.csv
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1d_wt.fastq_slamdunk_mapped_filtered_mutationrates_utr.log
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1d_wt.fastq_slamdunk_mapped_filtered_mutationrates_utr.pdf
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1e_wt.fastq_slamdunk_mapped_filtered_mutationrates_utr.csv
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1e_wt.fastq_slamdunk_mapped_filtered_mutationrates_utr.log
/lustre/scratch115/realdata/mdt2/teams/miska/users/wm5/projects/uptt_long/out/uptt_slamdunk/uptt3_1e_wt.fastq_slamdunk_mapped_filtered_mutationrates_utr.pdf

Slamdunk

Slamdunk is a tool to analyze SLAMSeq data.

Conversion rates per UTR

This plot shows the individual conversion rates for all UTRs (see the slamdunk docs).

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Slamdunk

Conversion rates per UTR

v1.6

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