Supplement to Improving identification of in-organello protein-protein interactions using an affinity-enrichable, isotopically-coded, and mass spectrometry-cleavable chemical crosslinker

Supplemental Data

Supplemental Figures and Tables - Supplemental Material Figures S1-S4. Supplemental Material Table S1. Hardklör parameters. Supplemental Material Table S2. Krönik parameters. Supplemental Material Table S3. Kojak parameters. Supplemental Material Table S4. Description of all features used to represent PSMs. Supplemental Material Table S5. Percolator parameters.
Supplemental Material 1 - FASTA sequence database used for Kojak searches.
Supplemental Material 2 - List of (crosslinked) peptide-spectrum matches identified
Supplemental Material 3 - List of protein-protein interactions identified. Excel table (.xlsx) of protein-protein interactions identified in QExactiveHF SP60, 61, 62 SCX datasets at 2% FDR with comparison to known protein sub-compartment localizations.
Supplemental Material 4 - Instructions for viewing annotated spectra using Kojak Spectrum Viewer