"Additional file 7: Data S3. Details of each sample used for BSA-ddRADseq: sample ID, sex, source of the sample, ddRADseq run, P1 and P2 barcode information and the generated paired-end reads. ",,,,,,,
Sample ID,Gender,Source,Family,Run,P1 Barcode,P2 Barcode,Paired-end reads
09Dam_1,Dam,GIFT,1,1,TCAGA,TAGCA,123643
09Sire_1,Sire,GIFT,1,1,GATCG,TAGCA,157298
09FPP1_1,Female progeny pool,GIFT,1,1,CATGA,TAGCA,95965
09MPP1_1,Male progeny pool,GIFT,1,1,ATCGA,TAGCA,142525
12Dam_1,Dam,GIFT,2,1,TCGAG,TAGCA,126529
12Sire_1,Sire,GIFT,2,1,GTCAC,TAGCA,121730
12FPP1_1,Female progeny pool,GIFT,2,1,GCATT,TAGCA,163289
12MPP1_1,Male progeny pool,GIFT,2,1,CGATA,TAGCA,222765
13Dam_1,Dam,GIFT,3,1,TGCAACA,TAGCA,142380
13Sire_1,Sire,GIFT,3,1,CGTATCA,TAGCA,190345
13FPP2_1,Female progeny pool,GIFT,3,1,CACAGAC,TAGCA,158195
13MPP2_1,Male progeny pool,GIFT,3,1,ACTGCAC,TAGCA,134364
15Dam_1,Dam,GIFT,4,1,TCTCTCA,AGCTGTC,111468
15Sire_1,Sire,GIFT,4,1,GTACACA,AGCTGTC,137183
15FPP2_1,Female progeny pool,GIFT,4,1,CTCTTCA,AGCTGTC,157562
15MPP2_1,Male progeny pool,GIFT,4,1,CTAGGAC,AGCTGTC,150490
23Dam_1,Dam,GIFT,5,1,ACGTA,AGCTGTC,189657
23Sire_1,Sire,GIFT,5,1,AGAGT,AGCTGTC,160752
23FPP1_1,Female progeny pool,GIFT,5,1,ATGCT,AGCTGTC,126366
23MPP1_1,Male progeny pool,GIFT,5,1,GACTA,AGCTGTC,165290
C1PF_1,Dam,Stirling,1,1,CAGTCAC,AGCTGTC,98493
C1PM_1,Sire,Stirling,1,1,GCTAACA,AGCTGTC,188991
C1FPP1_1,Female progeny pool,Stirling,1,1,ACACGAG,AGCTGTC,162278
C1MPP1_1,Male progeny pool,Stirling,1,1,AGGACAC,AGCTGTC,144365
C2PF_1,Dam,Stirling,2,1,TCAGA,AGTCA,16273
C2PM_1,Sire,Stirling,2,1,GATCG,AGTCA,82445
C2FPP1_1,Female progeny pool,Stirling,2,1,CATGA,AGTCA,90763
C2MPP1_1,Male progeny pool,Stirling,2,1,ATCGA,AGTCA,111798
09Dam_2,Dam,GIFT,1,1,TCTCTCA,TACGTGT,81705
9Sire_2,Sire,GIFT,1,1,GTACACA,TACGTGT,86160
9FPP1_2,Female progeny pool,GIFT,1,1,CTCTTCA,TACGTGT,61668
9MPP1_2,Male progeny pool,GIFT,1,1,CTAGGAC,TACGTGT,78827
12Dam_2,Dam,GIFT,2,1,ACGTA,TACGTGT,113777
12Sire_2,Sire,GIFT,2,1,AGAGT,TACGTGT,203213
12FPP1_2,Female progeny pool,GIFT,2,1,ATGCT,TACGTGT,84532
12MPP1_2,Male progeny pool,GIFT,2,1,GACTA,TACGTGT,83973
13Dam_2,Dam,GIFT,3,1,CAGTCAC,TACGTGT,99497
13Sire_2,Sire,GIFT,3,1,GCTAACA,TACGTGT,131533
13FPP2_2,Female progeny pool,GIFT,3,1,ACACGAG,TACGTGT,125036
13MPP2_2,Male progeny pool,GIFT,3,1,AGGACAC,TACGTGT,71009
15Dam_2,Dam,GIFT,4,1,TCAGA,GCATA,84256
15Sire_2,Sire,GIFT,4,1,GATCG,GCATA,81829
15FPP2_2,Female progeny pool,GIFT,4,1,CATGA,GCATA,106166
15MPP2_2,Male progeny pool,GIFT,4,1,ATCGA,GCATA,139187
23Dam_2,Dam,GIFT,5,1,TCGAG,GCATA,100642
23Sire_2,Sire,GIFT,5,1,GTCAC,GCATA,87363
23FPP1_2,Female progeny pool,GIFT,5,1,GCATT,GCATA,91943
23MPP1_2,Male progeny pool,GIFT,5,1,CGATA,GCATA,128612
C1PF_2,Dam,Stirling,1,1,TGCAACA,GCATA,84586
C1PM_2,Sire,Stirling,1,1,CGTATCA,GCATA,117617
C1FPP1_2,Female progeny pool,Stirling,1,1,CACAGAC,GCATA,118846
C1MPP1_2,Male progeny pool,Stirling,1,1,ACTGCAC,GCATA,113788
C2PF_2,Dam,Stirling,2,1,TCTCTCA,CGATC,15307
C2PM_2,Sire,Stirling,2,1,GTACACA,CGATC,69706
C2FPP1_2,Female progeny pool,Stirling,2,1,CTCTTCA,CGATC,120063
C2MPP1_2,Male progeny pool,Stirling,2,1,CTAGGAC,CGATC,98593
09Dam_3,Dam,GIFT,1,1,TCAGA,CATCTGT,157346
9Sire_3,Sire,GIFT,1,1,GATCG,CATCTGT,173931
9FPP1_3,Female progeny pool,GIFT,1,1,CATGA,CATCTGT,139715
9MPP1_3,Male progeny pool,GIFT,1,1,ATCGA,CATCTGT,158759
12Dam_3,Dam,GIFT,2,1,TCGAG,CATCTGT,202028
12Sire_3,Sire,GIFT,2,1,GTCAC,CATCTGT,176908
12FPP1_3,Female progeny pool,GIFT,2,1,GCATT,CATCTGT,200232
12MPP1_3,Male progeny pool,GIFT,2,1,CGATA,CATCTGT,242729
13Dam_3,Dam,GIFT,3,1,TGCAACA,CATCTGT,175317
13Sire_3,Sire,GIFT,3,1,CGTATCA,CATCTGT,233969
13FPP2_3,Female progeny pool,GIFT,3,1,CACAGAC,CATCTGT,197617
13MPP2_3,Male progeny pool,GIFT,3,1,ACTGCAC,CATCTGT,177787
15Dam_3,Dam,GIFT,4,1,TCTCTCA,CTGGT,107502
15Sire_3,Sire,GIFT,4,1,GTACACA,CTGGT,109129
15FPP2_3,Female progeny pool,GIFT,4,1,CTCTTCA,CTGGT,130741
15MPP2_3,Male progeny pool,GIFT,4,1,CTAGGAC,CTGGT,154604
23Dam_3,Dam,GIFT,5,1,ACGTA,CTGGT,137201
23Sire_3,Sire,GIFT,5,1,AGAGT,CTGGT,119525
23FPP1_3,Female progeny pool,GIFT,5,1,ATGCT,CTGGT,121042
23MPP1_3,Male progeny pool,GIFT,5,1,GACTA,CTGGT,115965
C1PF_3,Dam,Stirling,1,1,CAGTCAC,CTGGT,89216
C1PM_3,Sire,Stirling,1,1,GCTAACA,CTGGT,143662
C1FPP1_3,Female progeny pool,Stirling,1,1,ACACGAG,CTGGT,121026
C1MPP1_3,Male progeny pool,Stirling,1,1,AGGACAC,CTGGT,85784
C2PF_3,Dam,Stirling,2,1,TCAGA,GTCAAGT,43332
C2PM_3,Sire,Stirling,2,1,GATCG,GTCAAGT,118512
C2FPP1_3,Female progeny pool,Stirling,2,1,CATGA,GTCAAGT,160487
C2MPP1_3,Male progeny pool,Stirling,2,1,ATCGA,GTCAAGT,207241
09FPP1_4,Female progeny pool,GIFT,1,1,TCTCTCA,GAAGC,85791
09MPP1_4,Male progeny pool,GIFT,1,1,GTACACA,GAAGC,86258
12FPP1_4,Female progeny pool,GIFT,2,1,CTCTTCA,GAAGC,88832
12MPP1_4,Male progeny pool,GIFT,2,1,CTAGGAC,GAAGC,139424
13FPP2_4,Female progeny pool,GIFT,3,1,ACGTA,GAAGC,169902
13MPP2_4,Male progeny pool,GIFT,3,1,AGAGT,GAAGC,171811
15FPP2_4,Female progeny pool,GIFT,4,1,ATGCT,GAAGC,138987
15MPP2_4,Male progeny pool,GIFT,4,1,GACTA,GAAGC,122574
23FPP1_4,Female progeny pool,GIFT,5,1,CAGTCAC,GAAGC,146200
23MPP1_4,Male progeny pool,GIFT,5,1,GCTAACA,GAAGC,147257
C1FPP1_4,Female progeny pool,Stirling,1,1,ACACGAG,GAAGC,203344
C1MPP1_4,Male progeny pool,Stirling,1,1,AGGACAC,GAAGC,159651
C2FPP1_4,Female progeny pool,Stirling,2,1,CACAGAC,ATACGGT,161103
C2MPP1_4,Male progeny pool,Stirling,2,1,ACTGCAC,ATACGGT,144177
025Dam,Dam,GIFT,6,2,TCAGA,GCATA,112012
025Sire,Sire,GIFT,6,2,TGCAACA,GAGATGT,153459
025FPP,Female progeny pool,GIFT,6,2,GATCG,CGATC,241839
025MPP,Male progeny pool,GIFT,6,2,CGTATCA,CATCTGT,136387
027Dam,Dam,GIFT,7,2,CATGA,CTGGT,143505
027Sire,Sire,GIFT,7,2,CACAGAC,GTCAAGT,188324
027FPP,Female progeny pool,GIFT,7,2,ATCGA,GAAGC,204086
027MPP,Male progeny pool,GIFT,7,2,ACTGCAC,ATACGGT,219802
031Dam,Dam,GIFT,8,2,TCGAG,TAGCA,180441
031Sire,Sire,GIFT,8,2,TCTCTCA,AGCTGTC,147983
031FPP,Female progeny pool,GIFT,8,2,GTCAC,AGTCA,155088
031MPP,Male progeny pool,GIFT,8,2,GTACACA,TACGTGT,109642
033Dam,Dam,GIFT,9,2,GCATT,GCATA,161261
033FPP,Female progeny pool,GIFT,9,2,CTCTTCA,GAGATGT,136975
033MPP,Male progeny pool,GIFT,9,2,CGATA,CGATC,229746
037Dam,Dam,GIFT,10,2,CTAGGAC,CATCTGT,248577
037Sire,Sire,GIFT,10,2,ACGTA,CTGGT,278181
037FPP,Female progeny pool,GIFT,10,2,CAGTCAC,GTCAAGT,162717
037MPP,Male progeny pool,GIFT,10,2,AGAGT,GAAGC,186951
044Dam,Dam,GIFT,11,2,GCTAACA,ATACGGT,144088
044Sire,Sire,GIFT,11,2,ATGCT,TAGCA,114381
044FPP,Female progeny pool,GIFT,11,2,ACACGAG,AGCTGTC,221514
044MPP,Male progeny pool,GIFT,11,2,GACTA,AGTCA,208800
050Dam,Dam,GIFT,12,2,AGGACAC,TACGTGT,192117
050Sire,Sire,GIFT,12,2,TCAGA,GAGATGT,228102
050FPP,Female progeny pool,GIFT,12,2,TGCAACA,CGATC,140324
050MPP,Male progeny pool,GIFT,12,2,GATCG,CATCTGT,174325
052Dam,Dam,GIFT,13,2,CGTATCA,CTGGT,188587
052Sire,Sire,GIFT,13,2,CATGA,GTCAAGT,245158
052FPP,Female progeny pool,GIFT,13,2,CACAGAC,GAAGC,118119
052MPP,Male progeny pool,GIFT,13,2,ATCGA,ATACGGT,181093
053Dam,Dam,GIFT,14,2,ACTGCAC,TAGCA,179638
053Sire,Sire,GIFT,14,2,TCGAG,AGCTGTC,194859
053FPP,Female progeny pool,GIFT,14,2,TCTCTCA,AGTCA,196819
053MPP,Male progeny pool,GIFT,14,2,GTCAC,TACGTGT,141913
056Dam,Dam,GIFT,15,2,GTACACA,GCATA,176234
056Sire,Sire,GIFT,15,2,GCATT,GAGATGT,203256
056FPP,Female progeny pool,GIFT,15,2,CTCTTCA,CGATC,181425
056MPP,Male progeny pool,GIFT,15,2,CGATA,CATCTGT,172846
087Dam,Dam,GIFT,16,2,CTAGGAC,CTGGT,228579
087Sire,Sire,GIFT,16,2,ACGTA,GTCAAGT,207664
087FPP,Female progeny pool,GIFT,16,2,CAGTCAC,GAAGC,211260
087MPP,Male progeny pool,GIFT,16,2,AGAGT,ATACGGT,138363
097Dam1,Dam,GIFT,17,2,GCTAACA,TAGCA,301583
097Dam2,Dam,GIFT,17,2,ATGCT,AGTCA,192209
097Sire1,Sire,GIFT,17,2,ATGCT,AGCTGTC,183624
097Sire2,Sire,GIFT,17,2,ACACGAG,TACGTGT,177809
097FPP,Female progeny pool,GIFT,17,2,ACACGAG,AGTCA,172217
097MPP,Male progeny pool,GIFT,17,2,GACTA,TACGTGT,168801
101Dam,Dam,GIFT,18,2,AGGACAC,GCATA,141976
101Sire,Sire,GIFT,18,2,TCAGA,CGATC,178195
101FPP,Female progeny pool,GIFT,18,2,TGCAACA,CATCTGT,176494
101MPP,Male progeny pool,GIFT,18,2,GATCG,CTGGT,154099
105Dam,Dam,GIFT,19,2,CGTATCA,GTCAAGT,173236
105Sire,Sire,GIFT,19,2,CATGA,GAAGC,259019
105FPP,Female progeny pool,GIFT,19,2,CACAGAC,ATACGGT,204079
105MPP,Male progeny pool,GIFT,19,2,ATCGA,TAGCA,292005