DOI,Date,Graph,Title,Order in web of science,Host_Genus,Host_species,,Host_species_common,Aquaculture_species,Fish_type,Environment ,Sequencing,Sequencing_2,Marker,Nested_type,Type_of_study,Gut_sample_type,Water_sample?
10.7717/peerj.2412,2016,1,Whole gut microbiome composition of damselfish and cardinalfish before,103,Acanthochromis,polyacanthus,,Spiny chromis,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Acanthogobius,flavimanus,,Yellowfin goby,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Acanthopagrus,schlegelii,,Blackhead seabream,YES,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1016/j.fsi.2017.11.001,2018,1,"Effects of dietary raffinose on growth, non-specific immunity,",68,Acipenser,baeri Brandt,,Siberian sturgeon,NO,Teleost,Freshwater,Illumina MiSeq,Illumina HiSeq,V3V4,,Original research,IC,NO
10.1111/1574-6941.12169,2013,1,Prebiotic effects of arabinoxylan oligosaccharides on juvenile Siberian,131,Acipenser,baerii,,Siberian sturgeon,YES,Teleost,Freshwater,454 pyrosequencing,NA,V3,,Original research,IC,NO
10.1186/s40168-018-0467-7,2018,1,Mind the gut: genomic insights to population divergence and gut,54,Ammodytes,tobianus,,Lesser sand eel,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC,YES
10.1007/s00253-018-8885-9,2018,1,"Community composition, diversity, and metabolism of intestinal",55,Anguilla,anguilla,,European eel,YES,Teleost,Catadromous,Illumina MiSeq,NA,V3V4,,Original research,IM/IC,NO
10.1111/are.13700,2018,1,Revealing the compositions of the intestinal microbiota of three,49,Anguilla,bicolor,pacifica,Indian shortfin eel,NO,Teleost,Freshwater,Illumina MiSeq,NA,Nested,V3V4Nested,Original research,IC,NO
10.1111/are.13700,2018,1,Revealing the compositions of the intestinal microbiota of three,49,Anguilla,japonica,,Japanese eel,YES,Teleost,Freshwater,Illumina MiSeq,NA,Nested,V3V4Nested,Original research,IC,NO
10.1111/are.13700,2018,1,Revealing the compositions of the intestinal microbiota of three,49,Anguilla,marmorata,,Giant mottled eel,YES,Teleost,Freshwater,Illumina MiSeq,NA,Nested,V3V4Nested,Original research,IC,NO
10.1016/j.aquaculture.2016.05.010,2016,1,Effects of alternative plant-based feeds on hepatic and gastrointestinal,99,Anoplopoma,fimbria,,Sablefish,NO,Teleost,Saltwater,PhyloChip™,NA,Whole ,,Original research,IC,NO
10.1186/s40168-016-0190-1,2016,1,Environment shapes the fecal microbiome of invasive carp species,104,Aplodinotus,grunniens,,Freshwater drum,YES,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Apogon,semilineatus,,Barface cardinalfish,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.3390/ani8110189,2018,1,Cetobacterium Is a Major Component of the Microbiome of Giant Amazonian,31,Arapaima,gigas,,Pirarucu,YES,Teleost,Freshwater,Ion Torrent PGM,NA,V2V4,,Original research,IC,NO
10.7717/peerj.6000,2018,1,Intestinal microbiome and its potential functions in bighead carp,23,Aristichthys,nobilis,,Bighead carp,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,,
10.7717/peerj.5906,2018,1,Microbiome differences between river-dwelling and cave-adapted,30,Astyanax,mexicanus,,Mexican tetra,NO,Teleost,Freshwater,Ion Torrent PGM,NA,V2V3V4V6-7V8V9,,Original research,SM/SC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Bairdiella,chrysoura,,Silver perch,NO,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.1007/s13213-018-1324-4,2018,1,Comparative study on intestinal bacterial communities of Boleophthalmus,60,Boleophthalmus,pectinirostris,,Bluespotted mudskipper,NO,Teleost,Saltwater,Illumina MiSeq,NA,V4,,Original research,IM,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Caranx,hippos,,Crevalle jack,YES,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Caranx,sexfasciatus,,Bigeye trevally,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1111/jam.12663,2014,1,Comparative study on gastrointestinal microbiota of eight fish species,124,Carassius,auratus,,Goldfish,YES,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,SC/IC,NO
10.3389/fmicb.2017.00454,2017,1,"Multi-Omics Analysis Reveals a Correlation between the Host Phylogeny,",87,Carassius,auratus,,Crucian carp,YES,Teleost,Freshwater,454 pyrosequencing,NA,V4,,Original research,IC,NO
10.1038/srep24340,2016,1,The gut microbiome and degradation enzyme activity of wild freshwater,109,Carassius,auratus,,Crucian carp,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IC,NO
10.1186/s40168-016-0190-1,2016,1,Environment shapes the fecal microbiome of invasive carp species,104,Carassius,auratus,,Goldfish,YES,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,IC,NO
10.1002/mbo3.650,2019,1,Microorganism's adaptation of Crucian carp may closely relate to its,7,Carassius,auratus,,Crucian carp,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,,
10.1111/jam.14064,2018,1,Diet and other environmental factors shape the bacterial communities of,27,Carassius,carassius,,Crucian carp,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,YES
10.1111/jam.14064,2018,1,Diet and other environmental factors shape the bacterial communities of,27,Carassius,gibelio,,Prussian carp,NO,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,YES
10.1093/femsec/fiw240,2017,1,DNA extraction protocols may influence biodiversity detected in the,91,Carassius,gibelio,,Prussian carp,NO,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Carcharhinus,brevipinna,,Spinner shark,NO,Elasmobranch,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Carcharhinus,plumbeus,,Sandbar shark,NO,Elasmobranch,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Centropristis,striata,,Black sea bass,YES,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Chelonodon,patoca,,Milkspotted puffer,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.2412,2016,1,Whole gut microbiome composition of damselfish and cardinalfish before,103,Chromis,sps,,Chromis sps,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.1002/mbo3.716,2018,1,Microbial effects of livestock manure fertilization on freshwater,24,Clarias,gariepinus,,North African catfish,YES,Teleost,Freshwater,Illumina MiSeq,Illumina HiSeq,V4,,Original research,,YES
10.1134/S1062359015050039,2015,1,Study of the microbiome of the intestine of the Comephorus dybowski,117,Comephorus,dybowski,,Little Baikal oilfish,NO,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,IM/IC,NO
10.1128/AEM.00063-18,2018,1,The Gills of Reef Fish Support a Distinct Microbiome Influenced by,56,Community,,,Reef fish,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC,YES
10.1127/fal/2016/0804,2017,1,Gut microbiome of juvenile coregonid fishes: comparison of sympatric,92,Coregonus,baicalensis,,Baikal whitefish,NO,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC,NO
10.1127/fal/2016/0804,2017,1,Gut microbiome of juvenile coregonid fishes: comparison of sympatric,92,Coregonus,migratorius,,Omul,NO,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC,NO
10.1038/srep30606,2016,1,Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius,107,Coreius,guichenoti,,Largemouth bronze gudgeon,NO,Teleost,Freshwater,Illumina MiSeq,NA,V3,,Original research,IC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Coryphaena,hippurus,,Mahi-mahi,NO,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.1111/1574-6941.12256,2014,1,Factors influencing the grass carp gut microbiome and its effect on,128,Ctenopharyngodon,idellus,,Grass carp,YES,Teleost,Freshwater,Illumina HiSeq,NA,Total DNA,,Original research,IC,NO
10.1111/jam.12663,2014,1,Comparative study on gastrointestinal microbiota of eight fish species,124,Ctenopharyngodon,idellus,,Grass carp,YES,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,SC/IC,NO
10.3389/fmicb.2018.01913,2018,1,Broad Bean (Vicia faba L.) Induces Intestinal Inflammation in Grass Carp,44,Ctenopharyngodon,idellus,,Grass Carp ,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IM/IC/SM/SC,NO
10.3389/fmicb.2017.00454,2017,1,"Multi-Omics Analysis Reveals a Correlation between the Host Phylogeny,",87,Ctenopharyngodon,idellus,,Grass carp,YES,Teleost,Freshwater,454 pyrosequencing,NA,V4,,Original research,IC,NO
10.1038/srep24340,2016,1,The gut microbiome and degradation enzyme activity of wild freshwater,109,Ctenopharyngodon,idellus,,Grass carp,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IC,NO
10.1111/are.13381,2017,1,Impacts of diet on hindgut microbiota and short-chain fatty acids in,73,Ctenopharyngodon,idellus,,Grass carp,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4V5,,Original research,IC,NO
10.1111/are.13367,2017,1,A review of intestinal microbes in grass carp Ctenopharyngodon idellus,80,Ctenopharyngodon,idellus,,Grass carp,YES,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.1016/j.aquaculture.2018.08.062,2019,1,Changes in microbiota along the intestine of grass carp,21,Ctenopharyngodon,idellus,,Grass carp,YES,Teleost,Freshwater,Illumina HiSeq,NA,V3V4,,Original research,,
10.1038/srep24340,2016,1,The gut microbiome and degradation enzyme activity of wild freshwater,109,Culter,alburnus,,Topmouth culter,NO,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IC,NO
10.1111/jam.14064,2018,1,Diet and other environmental factors shape the bacterial communities of,27,Cyprinus,carpio,,Common carp,NO,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,YES
10.1111/jam.12663,2014,1,Comparative study on gastrointestinal microbiota of eight fish species,124,Cyprinus,carpio,,Common carp,NO,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,SC/IC,NO
10.1038/srep24340,2016,1,The gut microbiome and degradation enzyme activity of wild freshwater,109,Cyprinus,carpio,,Common carp,NO,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IC,NO
10.1186/s40168-016-0190-1,2016,1,Environment shapes the fecal microbiome of invasive carp species,104,Cyprinus,carpio,,Common carp,NO,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,IC,NO
10.1186/s40168-016-0190-1,2016,1,Environment shapes the fecal microbiome of invasive carp species,104,Cyprinus,carpio,,Common carp,NO,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,IC,NO
10.1186/s40168-016-0190-1,2016,1,Environment shapes the fecal microbiome of invasive carp species,104,Cyprinus,carpio,,Common carp,NO,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,IC,NO
10.1186/s40168-016-0190-1,2016,1,Environment shapes the fecal microbiome of invasive carp species,104,Cyprinus,carpio,,Common carp,NO,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,IC,NO
10.1002/mbo3.626,2019,1,Biases from different DNA extraction methods in intestine microbiome,20,Cyprinus,carpio,,Koi carp,NO,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,,
10.1111/are.13799,2018,1,Analysing the effect of dietary prebiotics and probiotics on gut,36,Danio,rerio,,Zebra fish,NO,Teleost,Freshwater,T?RFLP fragment sequencing,NA,NA,,Original research,IM/IC,NO
10.1038/ismej.2011.38,2011,1,Evidence for a core gut microbiota in the zebrafish,139,Danio,rerio,,Zebra fish,NO,Teleost,Freshwater,454 pyrosequencing,NA,V1V2,,Original research,,NO
10.1093/femsle/fny188,2018,1,Dysbiosis and early mortality in zebrafish larvae exposed to subclinical,40,Danio,rerio,,Zebra fish,NO,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,Whole fish,NO
10.1371/journal.pone.0163895,2016,1,Influence of Endogenous and Exogenous Estrogenic Endocrine on Intestinal,101,Danio,rerio,,Zebra fish,NO,Teleost,Freshwater,Illumina MiSeq,NA,V4V5,,Original research,IM/IC/SM/SC,NO
10.1016/j.chemosphere.2019.01.147,2019,1,Long-term effects of oxytetracycline exposure in zebrafish: A,1,Danio,rerio,,Zebra fish,NO,Teleost,Freshwater,Illumina MiSeq,NA,Nested,V3Nested,Original research,,
10.1016/j.scitotenv.2019.01.245,2019,1,"Microplastics induce intestinal inflammation, oxidative stress, and",2,Danio,rerio,,Zebra fish,NO,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,,
10.1186/s40168-019-0622-9,2019,1,A longitudinal assessment of host-microbe-parasite interactions resolves,19,Danio,rerio,,Zebra fish,NO,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,,
10.7717/peerj.2412,2016,1,Whole gut microbiome composition of damselfish and cardinalfish before,103,Dascyllus,aruanus,,Whitetail dascyllus,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Ditrema,temmincki,temmincki,Surfperch,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.3389/fmicb.2019.00716,2019,1,A Risky Business? Habitat and Social Behavior Impact Skin and Gut,5,Elacatinus,prochilos,,Caribbean Cleaning Gobies,NO,Teleost,Saltwater,Illumina MiSeq,NA,V4,,Original research,,
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Fundulus,heteroclitus,,Mummichog,NO,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.1186/s12866-018-1171-2,2018,1,Gastrointestinal microbial community changes in Atlantic cod (Gadus,57,Gadus,morhua,,Atlantic cod,YES,Teleost,Saltwater,Illumina MiSeq,NA,V4,,Original research,IM/IC/SM/SC,YES
10.3389/fmicb.2018.01561,2018,1,A Single Vibrionales 16S rRNA Oligotype Dominates the Intestinal,48,Gadus,morhua,,Atlantic cod,YES,Teleost,Saltwater,Illumina MiSeq,NA,V4,,Original research,IM/IC,NO
10.1186/s40168-019-0681-y,2019,1,Closely-related Photobacterium strains comprise the majority of bacteria,3,Gadus,morhua,,Atlantic cod,YES,Teleost,Saltwater,Illumina MiSeq,NA,Total DNA,,Original research,,
10.2147/IDR.S129055,2017,1,Microbiome disruption and recovery in the fish Gambusia affinis,97,Gambusia,affinis,,Mosquitofish,NO,Teleost,Freshwater,Illumina HiSeq,NA,V4,,Original research,IM/IC/SM/SC,YES
10.1016/j.cbpc.2015.10.004,2015,1,The host effects of Gambusia affinis with an antibiotic-disrupted,110,Gambusia,affinis,,Mosquitofish,NO,Teleost,Freshwater,Illumina HiSeq,NA,V4,,Original research,IM/IC/SM/SC,NO
10.3389/fimmu.2019.00243,2019,1,Diet in the Driving Seat: Natural Diet-Immunity-Microbiome Interactions,13,Gasterosteus,aculeatus,,Three-spined sticklebacks,NO,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,,
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Gerres,equulus,,Japanese silver-biddy,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Halichoeres,poecilopterus,,Japanese Wrasse,YES,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Hexagrammos,agrammus,,Spotty-bellied greenling,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Hexagrammos,otakii,,Fat greenling,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1186/s40168-018-0467-7,2018,1,Mind the gut: genomic insights to population divergence and gut,54,Hyperoplus,lanceolatus,,Great sand eel,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC,YES
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Hypoatherina,tsurugae,,Silverside,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1111/jam.12663,2014,1,Comparative study on gastrointestinal microbiota of eight fish species,124,Hypophthalmichthys,molitrix,,Silver carp,YES,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,SC/IC,NO
10.3389/fmicb.2017.00454,2017,1,"Multi-Omics Analysis Reveals a Correlation between the Host Phylogeny,",87,Hypophthalmichthys,molitrix,,Silver carp,YES,Teleost,Freshwater,454 pyrosequencing,NA,V4,,Original research,IC,NO
10.1038/srep24340,2016,1,The gut microbiome and degradation enzyme activity of wild freshwater,109,Hypophthalmichthys,molitrix,,Silver carp,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IC,NO
10.1186/s40168-016-0190-1,2016,1,Environment shapes the fecal microbiome of invasive carp species,104,Hypophthalmichthys,molitrix,,Silver carp,YES,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,IC,NO
10.1186/s40168-016-0190-1,2016,1,Environment shapes the fecal microbiome of invasive carp species,104,Hypophthalmichthys,molitrix,,Silver carp,YES,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,IC,NO
10.1111/jam.12663,2014,1,Comparative study on gastrointestinal microbiota of eight fish species,124,Hypophthalmichthys,nobilis,,Bighead carp,YES,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,SC/IC,NO
10.3389/fmicb.2017.00454,2017,1,"Multi-Omics Analysis Reveals a Correlation between the Host Phylogeny,",87,Hypophthalmichthys,nobilis,,Bighead carp,YES,Teleost,Freshwater,454 pyrosequencing,NA,V4,,Original research,IC,NO
10.1038/srep24340,2016,1,The gut microbiome and degradation enzyme activity of wild freshwater,109,Hypophthalmichthys,nobilis,,Bighead carp,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IC,NO
10.1186/s40168-016-0190-1,2016,1,Environment shapes the fecal microbiome of invasive carp species,104,Hypophthalmichthys,nobilis,,Bighead carp,YES,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,IC,NO
10.1186/s40168-016-0190-1,2016,1,Environment shapes the fecal microbiome of invasive carp species,104,Hypophthalmichthys,nobilis,,Bighead carp,YES,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,IC,NO
10.3389/fmicb.2018.01073,2018,1,Comparison of Channel Catfish and Blue Catfish Gut Microbiota,52,Ictalurus,furcatus,,Blue catfish,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IM/IC,YES
10.1016/j.syapm.2018.04.006,2018,1,Bacterial diversity and community structure of the intestinal microbiome,41,Ictalurus,punctatus,,Channel Catfish ,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,Whole fish or whole GI,YES
10.3389/fmicb.2018.01073,2018,1,Comparison of Channel Catfish and Blue Catfish Gut Microbiota,52,Ictalurus,punctatus,,Channel Catfish,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IM/IC,YES
10.1016/j.aquaculture.2018.11.019,2019,1,Consumption of florfenicol-medicated feed alters the composition of the,11,Ictalurus,punctatus,,Channel catfish,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,,
10.1016/j.aquaculture.2018.08.073,2019,1,Biotic and abiotic factors influencing channel catfish egg and gut,22,Ictalurus,punctatus,,Channel catfish,YES,Teleost,Freshwater,Illumina MiSeq,NA,Whole,,Original research,,
10.4194/1303-2712-v18_11_02,2018,1,Geotrichum candidum Enhanced the Enterococcus faecium Impact in,34,Labeo,rohita,,Rohu,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IM/IC,NO
10.1007/s00203-018-1615-y,2019,1,"Shotgun metagenomics offers novel insights into taxonomic compositions,",6,Labeo,rohita,,Rohu,YES,Teleost,Freshwater,Illumina NextSeq,NA,Total DNA,,Original research,,
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Lagodon,rhomboides,,Pinfish,NO,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.1111/jwas.12463,2018,1,"Intestinal Microbiota in Large Yellow Croaker, Larimichthys crocea, at",62,Larimichthys,crocea,,Large Yellow Croaker,YES,Teleost,Saltwater,Illumina MiSeq,NA,V4V5,,Original research,IM,YES
10.1111/are.13055,2017,1,Effects of fish meal replacement by soybean meal with supplementation of,84,Lateolabrax,japonicus,,Japanese seabass,YES,Teleost,Saltwater,Illumina MiSeq,NA,V4,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Lateolabrax,japonicus,,Japanese sea bass,YES,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1186/1471-2164-15-266,2014,1,The intestinal microbiome of fish under starvation,127,Lates,calcarifer,,Asian seabass,YES,Teleost,Saltwater,Illumina HiSeq,NA,NA,,Original research,IM/IC/SM/SC,NO
10.1111/jam.14064,2018,1,Diet and other environmental factors shape the bacterial communities of,27,Leuciscus,idus,,Ide,NO,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,YES
10.1111/jam.14064,2018,1,Diet and other environmental factors shape the bacterial communities of,27,Leuciscus,leuciscus,,Dace,NO,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,YES
10.1016/j.aquaculture.2018.08.008,2018,1,An insight into the gut microbiology of wild-caught Mangrove Red,25,Lutjanus,argentimaculatus,,Red Snapper,YES,Teleost,Saltwater,Cultivated,NA,NA,,Original research,,
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Lutjanus,russellii,,Russell's snapper,YES,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Lutjanus,stellatus,,Star snapper,YES,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1111/jam.12663,2014,1,Comparative study on gastrointestinal microbiota of eight fish species,124,Megalobrama,amblycephala,,Wuchang bream,YES,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,SC/IC,NO
10.1186/s12866-018-1246-0,2018,1,The variation profile of intestinal microbiota in blunt snout bream,39,Megalobrama,amblycephala,,Blunt snout bream,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IC,NO
10.3389/fmicb.2017.00454,2017,1,"Multi-Omics Analysis Reveals a Correlation between the Host Phylogeny,",87,Megalobrama,amblycephala,,Blunt snout bream ,YES,Teleost,Freshwater,454 pyrosequencing,NA,V4,,Original research,IC,NO
10.1038/srep24340,2016,1,The gut microbiome and degradation enzyme activity of wild freshwater,109,Megalobrama,amblycephala,,Blunt snout bream,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IC,NO
10.1016/j.aquaculture.2018.10.067,2019,1,Response of the gut microbiome of Megalobrama amblycephala to crowding,18,Megalobrama,amblycephala,,Wuchang bream,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,,
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Mugil,cephalus,,Flathead grey mullet,YES,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1007/s12088-018-0760-y,2018,1,Fish Gut Microbiome: Current Approaches and Future Perspectives,28,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.3389/fnut.2018.00090,2018,1,"How Can We Define ""Optimal Microbiota?"": A Comparative Review of",35,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.3389/fnut.2018.00080,2018,1,"A Comparative Review on Microbiota Manipulation: Lessons From Fish,",38,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.3389/fmicb.2018.00873,2018,1,The Gut Microbiota of Marine Fish,53,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.1093/femsec/fix161,2018,1,Exploring fish microbial communities to mitigate emerging diseases in,66,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Meta-analysis,NA,NA
10.1016/j.dci.2017.02.024,2017,1,Nutrigenomics and immune function in fish: new insights from omics,75,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.3390/toxins9090266,2017,1,High Throughput Identification of Antimicrobial Peptides from Fish,77,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Meta-analysis,NA,NA
10.3389/fmicb.2017.01531,2017,1,High Spatial and Temporal Variations of Microbial Community along the,78,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.1111/jam.13415,2017,1,Fish intestinal microbiome: diversity and symbiosis unravelled by,79,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.1111/mec.13730,2016,1,Microbiome evolution along divergent branches of the vertebrate tree of,105,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.1016/j.aquaculture.2015.06.033,2015,1,A new view of the fish gut microbiome: Advances from next-generation,111,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.1016/j.chom.2015.04.009,2015,1,Microbiota and Host Nutrition across Plant and Animal Kingdoms,118,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.3389/fmicb.2014.00207,2014,1,"Teleost microbiomes: the state of the art in their characterization,",126,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.1101/gad.212522.112,2013,1,Exploring host-microbiota interactions in animal models and humans,135,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.1146/annurev-physiol-012110-142152,2011,1,Ecological Physiology of Diet and Digestive Systems,140,NA,,,NA,NA,Teleost,NA,NA,NA,NA,,Review ,NA,NA
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Nuchequula,nuchalis,,Ponyfish,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Omobranchus,punctatus,,Muzzled blenny,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1016/j.aquaculture.2012.04.005,2012,1,Effects of plant-based diets on the distal gut microbiome of rainbow,137,Oncorhynchus,mykiss,,Rainbow trout,YES,Teleost,Freshwater,454 pyrosequencing,NA,cpn60,,Original research,,NO
10.1080/09637486.2017.1370699,2018,1,Influence of essential oils in diet and life-stage on gut microbiota and,67,Oncorhynchus,mykiss,,Rainbow trout,YES,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,IC,NO
10.1128/AEM.01826-15,2015,1,Topographical Mapping of the Rainbow Trout (Oncorhynchus mykiss),113,Oncorhynchus,mykiss,,Rainbow trout,YES,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,IM/IC,NO
10.1111/jam.13437,2017,1,Microbiome dynamic modulation through functional diets based on pre- and,86,Oncorhynchus,mykiss,,Rainbow trout,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM,NO
10.1371/journal.pone.0193652,2018,1,Next generation sequencing for gut microbiome characterization in,59,Oncorhynchus,mykiss,,Rainbow trout,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC,NO
10.1016/j.aquaculture.2017.12.022,2018,1,Effects of garlic-supplemented diet on growth performance and intestinal,61,Oncorhynchus,mykiss,,Rainbow trout,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IM,NO
10.1111/jam.13347,2017,1,Phylogenetic and functional characterization of the distal intestinal,93,Oncorhynchus,mykiss,,Rainbow trout,YES,Teleost,Freshwater,Illumina MiSeq,NA,Nested,V4Nested,Original research,IM,NO
10.1371/journal.pone.0177735,2017,1,The malleable gut microbiome of juvenile rainbow trout (Oncorhynchus,83,Oncorhynchus,mykiss,,Rainbow trout,YES,Teleost,Freshwater,Illumina MiSeq,NA,V6V8,,Original research,IM/IC/SM/SC,NO
10.1111/are.13080,2017,1,Effects of low-level dietary microalgae supplementation on the distal,85,Oncorhynchus,mykiss,,Rainbow trout,YES,Teleost,Freshwater,Illumina MiSeq,NA,Whole ,,Original research,IM/IC,NO
10.1016/j.fsi.2018.11.079,2019,1,Analysis of the gut and gill microbiome of resistant and susceptible,9,Oncorhynchus,mykiss,,Rainbow trout,YES,Teleost,Freshwater,Illumina MiSeq,NA,V1V3,,Original research,,
10.1111/jam.14059,2018,1,Intestinal microbiota lipid metabolism varies across rainbow trout,26,Oncorhynchus,mykiss,,Rainbow trout,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,,
10.7554/eLife.36398,2018,1,Host genetic selection for cold tolerance shapes microbiome composition,29,Oreochromis,aureus,,Blue tilapia,YES,Teleost,Freshwater,Illumina HiSeq,NA,V4,,Original research,IM/IC,NO
10.1016/j.aquaculture.2016.05.028,2016,1,Combined effects of exogenous enzymes and probiotic on Nile tilapia,102,Oreochromis,niloticus,,Nile tilapia,YES,Teleost,Freshwater,Ion Torrent PGM,NA,V1V2,,Original research,IC,NO
10.1007/s00248-018-1177-1,2018,1,"Effects of Lactogen 13, a New Probiotic Preparation, on Gut Microbiota",33,Oreochromis,niloticus,,Nile tilapia,YES,Teleost,Freshwater,Ion Torrent PGM,NA,V3,,Original research,Whole fish,NO
10.1007/s00253-015-6702-2,2015,1,"Modulation of the intestinal microbiota and morphology of tilapia,",114,Oreochromis,niloticus,,Nile tilapia,YES,Teleost,Freshwater,Ion Torrent PGM,NA,V3,,Original research,IC,NO
10.1371/journal.pone.0202351,2018,1,"Dietary salt levels affect digestibility, intestinal gene expression,",43,Oreochromis,niloticus,,Nile tilapia,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IM/IC,NO
10.1111/1574-6941.12442,2014,1,Unique and shared responses of the gut microbiota to prolonged fasting:,123,Oreochromis,niloticus,,Nile tilapia,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IM/IC,NO
10.1038/s41598-019-42480-8,2019,1,"Effects of a phytogenic, alone and associated with potassium diformate,",4,Oreochromis,niloticus,,Nile tilapia,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,,
10.1002/mbo3.716,2018,1,Microbial effects of livestock manure fertilization on freshwater,24,Oreochromis,shiranus,,Shiranus Tilapia,YES,Teleost,Freshwater,Illumina MiSeq,Illumina HiSeq,V4,,Original research,,YES
10.7717/peerj.2412,2016,1,Whole gut microbiome composition of damselfish and cardinalfish before,103,Ostorhinchus,doederleini,,Doederlein's cardinalfish,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.1111/lam.12061,2013,1,Microbial population dynamics in the faeces of wood-eating loricariid,134,Panaque,sp.,,Dull-eyed royal pleco,NO,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,IC,YES
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Parablennius,yatabei,,Yatabe blenny,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Paracentropogon,rubripinnis,,Red Fin Waspfish,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.3389/fmicb.2017.00271,2017,1,Fine Flounder (Paralichthys adspersus) Microbiome Showed Important,89,Paralichthys,adspersus,,Fine Flounder,NO,Teleost,Saltwater,Ion Torrent PGM,NA,V3,,Original research,IC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Paralichthys,lethostigma,,Southern flounder,NO,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.1111/jam.12663,2014,1,Comparative study on gastrointestinal microbiota of eight fish species,124,Pelteobagrus,fulvidraco,,Yellowhead catfish,YES,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,SC/IC,NO
10.1111/jam.14064,2018,1,Diet and other environmental factors shape the bacterial communities of,27,Perca,fluviatilis,,Perch,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,YES
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Periophthalmus,,,Mudskipper,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Periophthalmus,argentilineatus,,Barred mudskipper,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1007/s13213-018-1324-4,2018,1,Comparative study on intestinal bacterial communities of Boleophthalmus,60,Periophthalmus,magnuspinnatus,,Mudskipper,NO,Teleost,Saltwater,Illumina MiSeq,NA,V4,,Original research,IM,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Physiculus,maximowiczi,,Morid cod,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1186/s40168-019-0632-7,2019,1,Oral administration of antibiotics increased the potential mobility of,14,Piaractus,mesopotamicus,,Small-scaled pacu,NO,Teleost,Freshwater,Illumina MiSeq,NA,Total DNA,,Original research,,
10.1186/s40168-015-0069-6,2015,1,Perturbation and restoration of the fathead minnow gut microbiome after,120,Pimephales,promelas,,Fathead minnows,NO,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC,NO
10.1021/acs.est.8b01150,2018,1,Alterations to the Intestinal Microbiome and Metabolome of Pimephales,45,Pimephales,promelas,,Fathead minnow,NO,Teleost,Freshwater,Ion Torrent PGM,NA,V4,,Original research,Stool,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Platichthys,stellatus,,Starry flounder,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1371/journal.pone.0197256,2018,1,Intestinal microbiota composition is altered according to nutritional,50,Plectropomus,leopardus,,Leopard coral grouper ,YES,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IC,YES
10.1016/j.seares.2018.11.004,2019,1,Diet composition and gut microbiome of 0-group European plaice,16,Pleuronectes,platessa,,European plaice,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,,
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Pleuronectes,yokohamae,,Marbled flounder,YES,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1038/ismej.2014.231,2015,1,"Divergence across diet, time and populations rules out parallel",116,Poecilia,reticulata,,Trinidadian guppy,NO,Teleost,Freshwater,454 pyrosequencing,NA,V2V3,,Original research,IM/SM,YES
10.1128/mSystems.00133-17,2017,1,Subtle Microbiome Manipulation Using Probiotics Reduces,72,Poecilia,sphenops,,Black molly,NO,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,Whole fish,YES
10.1111/mec.13177,2015,1,Community assembly of a euryhaline fish microbiome during salinity,119,Poecilia,sphenops,,Black molly,NO,Teleost,Euryhaline,Illumina HiSeq,NA,V6,,Original research,Whole fish,YES
10.7717/peerj.2412,2016,1,Whole gut microbiome composition of damselfish and cardinalfish before,103,Pomacentrus,amboinensis,,Ambon damsel,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.7717/peerj.2412,2016,1,Whole gut microbiome composition of damselfish and cardinalfish before,103,Pomacentrus,bankanensis,,Speckled damsel,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.7717/peerj.2412,2016,1,Whole gut microbiome composition of damselfish and cardinalfish before,103,Pomacentrus,chrysurus,,Whitetail damselfish,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.7717/peerj.2412,2016,1,Whole gut microbiome composition of damselfish and cardinalfish before,103,Pomacentrus,coelestis,,Neon damselfish,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.7717/peerj.2412,2016,1,Whole gut microbiome composition of damselfish and cardinalfish before,103,Pomacentrus,moluccensis,,Lemon damsel,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.7717/peerj.2412,2016,1,Whole gut microbiome composition of damselfish and cardinalfish before,103,Pomacentrus,nagasakiensis,,Nagasaki damsel,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.7717/peerj.2412,2016,1,Whole gut microbiome composition of damselfish and cardinalfish before,103,Pomacentrus,wardii,,Ward's Damsel,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Pomadasys,argenteus,,Silver grunt,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1128/AEM.02479-18,2019,1,Feeding Rapidly Alters Microbiome Composition and Gene Transcription in,17,Premnas,biaculeatus,,Maroon clownfish,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V5,,Original research,,
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Pseudoblennius,cottoides,,Sculpin,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Pseudolabrus,eoethinus,,Red naped wrasse,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Rhinogobius,giurinus,,Barcheek goby,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Rhinogobius,sp.,,Goby,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Rhizoprionodon,terraenovae,,Atlantic sharpnose shark,NO,Elasmobranch,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.1111/jam.14059,2018,1,Diet and other environmental factors shape the bacterial communities of,26,Rutilus,rutilus,,Roach,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,YES
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Sagamia,geneionema,,Goby,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1128/AEM.00691-18,2018,1,Interpopulation Variation in the Atlantic Salmon Microbiome Reflects,46,Salmo,salar,,Atlantic Salmon,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IM/IC/SM/SC,YES
10.1038/ismej.2015.189,2016,1,The biogeography of the atlantic salmon (Salmo salar) gut microbiome,108,Salmo,salar,,Atlantic salmon,YES,Teleost,Anadromous ,Illumina MiSeq,NA,V4,,Original research,IM/IC,YES
10.1128/AEM.00902-16,2016,1,Influence of Fishmeal-Free Diets on Microbial Communities in Atlantic,106,Salmo,salar,,Atlantic salmon,YES,Teleost,Freshwater,Illumina HiSeq,NA,V6,,Original research,IM/IC,YES
10.1016/j.resmic.2017.07.003,2017,1,In vitro characteristics of an Atlantic salmon (Salmo salar L.) hind gut,74,Salmo,salar,,Atlantic salmon,YES,Teleost,Saltwater,Illumina MiSeq,NA,V1V3,,Original research,IC,NO
10.1016/j.aquaculture.2016.07.017,2017,1,Environmental and physiological factors shape the gut microbiota of,94,Salmo,salar,,Atlantic salmon,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IC,NO
10.1038/s41598-019-38800-7,2019,1,A diet-change modulates the previously established bacterial gut,12,Salmo,trutta,,Brown trout,YES,Teleost,Freshwater,Illumina MiSeq,NA,V6V8,,Original research,,
10.3389/fbioe.2019.00032,2019,1,Anadromous Arctic Char Microbiomes: Bioprospecting in the High Arctic,10,Salvelinus,alpinus,,Arctic char,YES,Teleost,Anadromous ,Illumina MiSeq,NA,V1V9,,Original research,,
10.1111/jam.14064,2018,1,Diet and other environmental factors shape the bacterial communities of,27,Sander,lucioperca,,Pike?perch,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,YES
10.1111/jfb.13496,2018,1,Characterization of the gut microbiota in early life stages of pikeperch,69,Sander,lucioperca,,Pikeperch,YES,Teleost,Freshwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Sardinella,zunasi,,Japanese sardinella,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Saurida,elongata,,Slender lizardfish,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1007/s13199-016-0455-2,2017,1,A first insight into the intestinal microbiota of snow trout,81,Schizothorax,zarudnyi,,Snow trout,NO,Teleost,Freshwater,454 pyrosequencing,NA,V3V6,,Original research,IM/IC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Sciaeops,ocellatus,,Red drum,YES,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Scomberomorus,cavalla,,King mackerel,NO,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Scomberomorus,maculatus,,Spanish mackerel,NO,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Scombrops,boops,,Gnomefish,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1111/1574-6941.12174,2013,1,Taxonomic and functional metagenomic profiling of gastrointestinal tract,130,Scophthalmus,maximus,,Turbot,YES,Teleost,Saltwater,Illumina HiSeq,NA,Total DNA,,Original research,IM/IC/SM/SC,YES
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Sebastes,ventricosus,,Japanese black seaperch,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Sebastiscus,marmoratus,,Sea ruffe,YES,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1111/1751-7915.13323,2019,1,Diet and diet-associated bacteria shape early microbiome development in,8,Seriola,lalandi,,Yellowtail Kingfish,YES,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,,
10.3389/fmicb.2077.07844,2017,1,The Microbiome of Seriola lalandi of Wild and Aquaculture Origin Reveals,76,Seriola,lalandi ,,Yellowtail Kingfish,YES,Teleost,Saltwater,Ion Torrent PGM,NA,V4,,Original research,IC,NO
10.3389/fmicb.2018.02000,2018,1,The Microbiome of the Gastrointestinal Tract of a Range-Shifting Marine,42,Siganus,fuscescens,,Pinspotted spinefoot,YES,Teleost,Saltwater,Illumina MiSeq,NA,V4,,Original research,IC,NO
10.7717/peerj.3317,2017,1,Microbiome patterns across the gastrointestinal tract of the rabbitfish,82,Siganus,fuscescens,,Pinspotted spinefoot,YES,Teleost,Saltwater,Illumina MiSeq,NA,V4,,Original research,IM/IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Sillago,japonica,,Japanese whiting,YES,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1186/s40168-018-0471-y,2018,1,Thermal processing of food reduces gut microbiota diversity of the host,51,Silurus,meridionalis,,Chinese large-mouth catfish,YES,Teleost,Freshwater,Illumina HiSeq,NA,V4V5,,Original research,IM/IC,NO
10.1111/jam.12663,2014,1,Comparative study on gastrointestinal microbiota of eight fish species,124,Siniperca,chuatsi,,Chinese perch,YES,Teleost,Freshwater,454 pyrosequencing,NA,V1V3,,Original research,SC/IC,NO
10.1038/srep24340,2016,1,The gut microbiome and degradation enzyme activity of wild freshwater,109,Siniperca,chuatsi,,Mandarin fish,YES,Teleost,Freshwater,Illumina MiSeq,NA,V4,,Original research,IC,NO
10.3389/fmicb.2019.00171,2019,1,Modulation of Intestinal Microbiota in Solea senegalensis Fed Low,15,Solea,senegalensis,,Senegalese sole,YES,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,,
10.1186/S40168-017-0390-3,2017,1,Under control: how a dietary additive can restore the gut microbiome and,70,Sparus,aurata,,Gilthead sea bream ,YES,Teleost,Saltwater,454 pyrosequencing,NA,V1V3,,Original research,IM,NO
10.7717/peerj.5355,2018,1,Effect of a specific composition of short- and medium-chain fatty acid,47,Sparus,aurata,,Gilthead sea bream ,YES,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Sphyraena,barracuda,,Great barracuda,NO,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Terapon,jarbua,,Crescent grunter,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.1016/j.anifeedsci.2018.09.002,2018,1,Effects of extruded aquafeed on growth performance and gut microbiome of,32,Totoaba,macdonaldi,,Totoaba,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,IM/IC/SM/SC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Trachurus,japonicus,,Japanese horse mackerel,YES,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.3389/fevo.2018.00151,2018,1,Historical DNA Metabarcoding of the Prey and Microbiome of Trematomid,37,Trematomus,hansoni,,Striped rockcod,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V5,,Original research,SC or IM/IC,NO
10.3389/fevo.2018.00151,2018,1,Historical DNA Metabarcoding of the Prey and Microbiome of Trematomid,37,Trematomus,loennbergii,,Scaly rockcod,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V6,,Original research,SC or IM/IC,NO
10.3389/fevo.2018.00151,2018,1,Historical DNA Metabarcoding of the Prey and Microbiome of Trematomid,37,Trematomus,newnesi,,Dusky notothen,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V4,,Original research,SC or IM/IC,NO
10.3389/fevo.2018.00151,2018,1,Historical DNA Metabarcoding of the Prey and Microbiome of Trematomid,37,Trematomus,scotti,,Crowned rockcod,NO,Teleost,Saltwater,Illumina MiSeq,NA,V3V7,,Original research,SC or IM/IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Tribolodon,hakonensis,,Big-scaled redfin,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Tridentiger,bifasciatus,,Shimofuri goby,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Tridentiger,brevispinis,,Numachichibu goby,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO
10.3354/meps11034,2015,1,Comparison of the gut microbiomes of 12 bony fish and 3 shark species,121,Trinectes,maculatus,,Hogchoker,NO,Teleost,Saltwater,454 pyrosequencing,NA,V1V2,,Original research,IM/IC,NO
10.7717/peerj.550,2014,1,Noninvasive analysis of metabolic changes following nutrient input into,125,Yongeichthys,criniger,,Horny Goby,NO,Teleost,Saltwater,454 pyrosequencing,NA,V6V8,,Original research,IC,NO