Gene Mut ID MG1655 Position DNA Mutation Mutation Type CDS position AA position AA mutation Upstream Gene Downstream Gene Population ID Gen 0 frequency Gen 100 frequency Gen 200 frequency Gen 300 frequency Gen 400 frequency Gen 500 frequency Gen 600 frequency Gen 700 frequency Gen 800 frequency Gen 900 frequency Gen 1000 frequency Gen 0 read depth Gen 100 read depth Gen 200 read depth Gen 300 read depth Gen 400 read depth Gen 500 read depth Gen 600 read depth Gen 700 read depth Gen 800 read depth Gen 900 read depth Gen 1000 read depth Multiply hit locus ftsW 10 99172 C->T NSYN 770 257 P->L E_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.446601942 0.837500000 0.836734694 0.636363636 212.0 72.0 119.0 42.0 30.0 120.0 103.0 80.0 98.0 121.0 TRUE ydhU 128 1749771 G->A NSYN 578 193 P->L E_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.541666667 0.821428571 0.906250000 0.610687023 325.0 122.0 119.0 78.0 57.0 130.0 144.0 140.0 160.0 131.0 FALSE rpoD 333 3214660 A->G SYN 1614 538 E->E E_4 0.025806452 0.123809524 0.087719298 0.063636364 0.218390805 0.134020619 0.144578313 0.065934066 0.103448276 0.047169811 0.014388489 155.0 105.0 57.0 110.0 87.0 97.0 83.0 91.0 58.0 106.0 139.0 TRUE 425 3815879 indel;T+C E_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.401785714 0.080645161 0.044444444 0.253521127 153.0 48.0 91.0 48.0 30.0 98.0 112.0 62.0 90.0 71.0 FALSE trkH 454 4033217 G->A NSYN 73 25 G->R E_6 0.000000000 0.300699301 0.070796460 0.324074074 0.026315789 0.011695906 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 210.0 143.0 113.0 108.0 114.0 171.0 96.0 125.0 133.0 22.0 127.0 TRUE rpoC 479 4186605 A->C NSYN 1256 419 H->P E_1 0.000000000 0.000000000 0.000000000 0.000000000 0.139534884 0.330578512 0.000000000 0.000000000 0.000000000 0.000000000 234.0 106.0 132.0 74.0 43.0 121.0 117.0 124.0 114.0 126.0 TRUE rpoC 479 4186605 A->C NSYN 1256 419 H->P S_2 0.000000000 0.000000000 0.000000000 0.138297872 0.304347826 0.101851852 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 226.0 116.0 117.0 94.0 161.0 108.0 147.0 151.0 122.0 169.0 132.0 TRUE rpoC 479 4186605 A->C NSYN 1256 419 H->P V_3 0.000000000 0.000000000 0.047904192 0.461538462 0.356435644 0.687500000 0.000000000 0.281879195 0.150442478 0.102564103 0.041666667 206.0 144.0 167.0 65.0 101.0 80.0 155.0 149.0 113.0 117.0 96.0 TRUE fimD 566 4545073 G->T NCOD fimD fimI E_1 0.004065041 0.000000000 0.010000000 0.619047619 0.536585366 0.264150943 0.954545455 0.978494624 0.964285714 0.950495050 246.0 75.0 100.0 63.0 41.0 106.0 132.0 93.0 112.0 101.0 TRUE fimD 566 4545073 G->T NCOD fimD fimI S_5 0.000000000 0.000000000 0.000000000 0.052631579 0.576086957 0.675159236 0.994565217 0.973684211 0.982954545 0.970873786 0.981707317 201.0 155.0 162.0 114.0 184.0 157.0 184.0 152.0 176.0 103.0 164.0 TRUE fimD 566 4545073 G->T NCOD fimD fimI Y_2 0.000000000 0.000000000 0.005952381 0.467532468 0.177570093 0.223684211 0.292682927 0.392156863 0.325757576 0.357954545 0.181208054 177.0 104.0 168.0 77.0 107.0 76.0 164.0 153.0 132.0 176.0 149.0 TRUE fimD 566 4545073 G->T NCOD fimD fimI V_6 0.004926108 0.000000000 0.000000000 0.000000000 0.125000000 0.385416667 0.784615385 0.786764706 1.000000000 0.964646465 0.966666667 203.0 127.0 165.0 84.0 112.0 96.0 65.0 136.0 35.0 198.0 60.0 TRUE fimD 566 4545073 G->T NCOD fimD fimI A_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.005494505 0.000000000 0.094240838 0.769230769 0.726027397 153.0 126.0 155.0 109.0 156.0 92.0 182.0 127.0 191.0 104.0 146.0 TRUE ftsP 739 3161975 C->G NSYN 695 232 R->P E_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.476635514 0.193548387 0.510416667 0.382716049 0.228571429 238.0 99.0 151.0 129.0 100.0 107.0 186.0 96.0 162.0 105.0 TRUE cytR 775 4123457 G->A NSYN 1000 334 R->W E_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.034285714 0.487394958 0.378698225 0.297709924 232.0 108.0 149.0 127.0 92.0 122.0 175.0 119.0 169.0 131.0 TRUE fimA 790 4543375 T->G NSYN 261 87 N->K E_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.216000000 0.496503497 0.395604396 0.503448276 0.669811321 234.0 111.0 188.0 134.0 85.0 125.0 143.0 91.0 145.0 106.0 TRUE fimD 793 4545036 G->T NCOD fimD fimI E_2 0.000000000 0.000000000 0.000000000 0.077464789 0.827586207 0.652542373 0.805555556 0.932692308 1.000000000 0.982758621 255.0 115.0 183.0 142.0 87.0 118.0 180.0 104.0 148.0 116.0 TRUE 817 1355153 indel;-12 E_2 0.000000000 0.000000000 0.030188679 0.446601942 0.840764331 0.988235294 0.983471074 0.985915493 0.990566038 0.980769231 175.5 88.5 132.5 103.0 78.5 85.0 121.0 71.0 106.0 104.0 FALSE 820 2175868 indel;-5 Y_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.018050542 0.000000000 0.008818342 0.482412060 0.183861083 128.7 70.9 109.8 95.8 84.3 70.9 110.8 138.9 113.4 99.5 97.9 FALSE ftsI 844 92262 A->G NSYN 850 284 N->D V_6 0.000000000 0.000000000 0.000000000 0.012820513 0.000000000 0.025974026 0.659090909 0.460176991 0.812500000 0.830303030 0.758620690 208.0 113.0 180.0 78.0 121.0 77.0 88.0 113.0 48.0 165.0 58.0 TRUE fimA 1139 4543518 C->G NSYN 404 135 T->R E_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.015748031 0.808823529 0.617187500 239.0 110.0 106.0 132.0 79.0 68.0 152.0 67.0 127.0 136.0 128.0 TRUE fimD 1140 4545071 C->A NCOD fimD fimI E_3 0.000000000 0.000000000 0.000000000 0.155172414 0.239130435 0.277777778 0.993421053 0.961904762 0.991803279 0.993589744 1.000000000 245.0 112.0 132.0 174.0 46.0 54.0 152.0 105.0 122.0 156.0 144.0 TRUE fimD 1140 4545071 C->A NCOD fimD fimI V_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.449664430 0.500000000 0.477777778 203.0 96.0 132.0 65.0 131.0 65.0 159.0 146.0 149.0 156.0 90.0 TRUE fimD 1140 4545071 C->A NCOD fimD fimI V_4 0.000000000 0.000000000 0.005235602 0.008547009 0.563380282 0.705035971 0.786885246 0.616279070 0.625000000 0.698795181 0.891089109 203.0 194.0 191.0 117.0 213.0 139.0 122.0 172.0 184.0 166.0 101.0 TRUE acpP 1198 1151627 G->A NSYN 13 5 E->K E_3 0.000000000 0.020833333 0.090000000 0.310344828 0.323076923 0.262295082 1.000000000 0.989583333 1.000000000 1.000000000 1.000000000 186.0 144.0 100.0 145.0 65.0 61.0 151.0 96.0 114.0 153.0 128.0 FALSE gtrS 1290 2470451 G->A NSYN 1321 441 V->I E_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.014388489 0.080000000 0.231132075 263.0 292.0 160.0 221.0 226.0 251.0 247.0 210.0 139.0 200.0 212.0 FALSE ftsB 1313 2872565 G->T NSYN 256 86 R->S E_4 0.000000000 0.000000000 0.000000000 0.000000000 0.023622047 0.116504854 0.814285714 0.922330097 0.957746479 0.952000000 0.993865031 183.0 144.0 102.0 123.0 127.0 103.0 140.0 103.0 71.0 125.0 163.0 FALSE trkH 1376 4033595 C->T NSYN 451 151 P->S E_4 0.000000000 0.390243902 0.857142857 0.855345912 0.777027027 0.924369748 1.000000000 1.000000000 0.968421053 1.000000000 0.989690722 146.0 164.0 77.0 159.0 148.0 119.0 169.0 134.0 95.0 148.0 194.0 TRUE trkH 1376 4033595 C->T NSYN 451 151 P->S Y_3 0.000000000 0.432432432 0.920731707 0.956043956 0.902654867 0.649350649 0.969924812 0.990384615 0.990654206 1.000000000 132.0 74.0 164.0 91.0 113.0 77.0 133.0 104.0 107.0 138.0 TRUE trkH 1376 4033595 C->T NSYN 451 151 P->S Y_4 0.000000000 0.473684211 0.726190476 0.771929825 0.977777778 1.000000000 1.000000000 0.990909091 0.981818182 1.000000000 0.989361702 132.0 114.0 84.0 114.0 135.0 77.0 84.0 110.0 110.0 72.0 94.0 TRUE fimD 1405 4545085 C->G NCOD fimD fimI E_4 0.000000000 0.000000000 0.491071429 0.841379310 0.837662338 0.962406015 1.000000000 0.993670886 0.990909091 1.000000000 0.990196078 224.0 180.0 112.0 145.0 154.0 133.0 158.0 158.0 110.0 133.0 204.0 TRUE fimD 1405 4545085 C->G NCOD fimD fimI S_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.022388060 0.239669421 0.263803681 0.196078431 178.0 69.0 134.0 96.0 74.0 58.0 141.0 134.0 121.0 163.0 153.0 TRUE fimD 1405 4545085 C->G NCOD fimD fimI Y_3 0.000000000 0.000000000 0.109452736 0.921052632 0.872180451 0.594059406 0.955752212 0.941176471 0.990000000 1.000000000 171.0 87.0 201.0 76.0 133.0 101.0 113.0 119.0 100.0 149.0 TRUE fimD 1405 4545085 C->G NCOD fimD fimI V_5 0.000000000 0.004347826 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.035398230 0.589403974 0.671641791 0.758241758 190.0 230.0 135.0 135.0 111.0 137.0 198.0 113.0 151.0 67.0 182.0 TRUE arcA 1408 4640201 C->T NSYN 106 36 G->S E_4 0.000000000 0.000000000 0.008333333 0.000000000 0.100877193 0.636363636 0.012658228 0.000000000 0.000000000 0.000000000 0.000000000 280.0 302.0 120.0 234.0 228.0 176.0 237.0 247.0 164.0 184.0 276.0 TRUE ybjN 1412 893015 G->A NSYN 59 20 G->E E_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.007462687 0.087912088 0.150943396 0.222222222 233.0 188.0 90.0 162.0 148.0 117.0 119.0 134.0 91.0 106.0 189.0 FALSE 1441 4123536 indel;+GCTT E_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.007727975 0.011848341 0.068587106 0.246507806 182.4 152.4 76.0 145.9 129.4 111.0 185.9 129.4 84.4 145.8 243.4 FALSE yejM 1539 2284995 C->A NSYN 620 207 P->Q E_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.052910053 0.311111111 320.0 106.0 129.0 130.0 155.0 123.0 132.0 159.0 119.0 189.0 135.0 FALSE alaA 1556 2407045 T->C NCOD alaA S_1 0.003968254 0.000000000 0.136363636 0.400000000 0.635593220 0.735294118 0.005780347 0.000000000 0.000000000 0.000000000 0.000000000 252.0 119.0 132.0 120.0 118.0 68.0 173.0 151.0 178.0 221.0 203.0 TRUE alaA 1556 2407045 T->C NCOD alaA S_2 0.003968254 0.000000000 0.052287582 0.285714286 0.264900662 0.411214953 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 252.0 162.0 153.0 77.0 151.0 107.0 250.0 198.0 159.0 223.0 153.0 TRUE alaA 1556 2407045 T->C NCOD alaA S_3 0.003968254 0.000000000 0.000000000 0.049295775 0.138297872 0.427184466 0.038674033 0.000000000 0.000000000 0.000000000 0.000000000 252.0 165.0 118.0 142.0 94.0 103.0 181.0 206.0 165.0 246.0 114.0 TRUE trkH 1639 4033614 G->C NSYN 470 157 G->A E_5 0.000000000 0.207317073 0.854545455 0.901234568 0.725000000 0.788135593 1.000000000 0.989130435 0.980392157 0.993421053 0.976190476 155.0 82.0 55.0 81.0 120.0 118.0 76.0 92.0 102.0 152.0 84.0 TRUE fimE 1685 4542191 A->C NSYN 155 52 D->A E_5 0.002865330 0.000000000 0.703030303 0.631901840 0.766233766 0.660000000 0.993975904 0.989898990 1.000000000 0.981900452 0.994594595 349.0 151.0 165.0 163.0 231.0 150.0 166.0 198.0 151.0 221.0 185.0 FALSE fimA 1686 4542681 indel;A-1 NCOD fimA fimE V_3 0.000000000 0.009523810 0.000000000 0.000000000 0.013333333 0.000000000 0.231343284 0.000000000 0.000000000 0.006756757 0.090909091 141.0 105.0 133.0 50.0 75.0 41.0 134.0 132.0 74.0 148.0 88.0 TRUE fimD 1687 4545071 C->T NCOD fimD fimI E_5 0.000000000 0.000000000 0.000000000 0.000000000 0.776397516 0.563909774 0.345794393 0.828767123 0.921875000 0.966101695 1.000000000 245.0 112.0 79.0 108.0 161.0 133.0 107.0 146.0 128.0 177.0 133.0 TRUE fimD 1687 4545071 C->T NCOD fimD fimI E_6 0.000000000 0.000000000 0.000000000 0.000000000 0.560344828 0.561497326 0.661417323 0.683673469 0.794701987 0.892857143 0.975000000 245.0 154.0 112.0 141.0 116.0 187.0 127.0 98.0 151.0 28.0 120.0 TRUE fimD 1687 4545071 C->T NCOD fimD fimI S_6 0.000000000 0.000000000 0.000000000 0.268041237 0.464516129 0.448529412 0.141975309 0.558620690 0.645390071 0.621052632 0.723756906 200.0 143.0 153.0 97.0 155.0 136.0 162.0 145.0 141.0 190.0 181.0 TRUE fimD 1687 4545071 C->T NCOD fimD fimI Y_6 0.000000000 0.000000000 0.458015267 0.814569536 0.564516129 0.402439024 0.503184713 0.818652850 0.879432624 0.946428571 0.984251969 180.0 150.0 131.0 151.0 124.0 164.0 157.0 193.0 141.0 168.0 127.0 TRUE fimD 1687 4545071 C->T NCOD fimD fimI A_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.137681159 0.269938650 0.361445783 0.117283951 156.0 78.0 167.0 110.0 127.0 150.0 137.0 138.0 163.0 166.0 162.0 TRUE eco 1803 2304649 C->T NCOD eco S_5 0.000000000 0.062500000 0.054054054 0.000000000 0.178571429 0.057142857 0.000000000 0.066666667 0.115384615 0.142857143 0.269230769 37.0 32.0 37.0 17.0 28.0 35.0 24.0 15.0 26.0 21.0 26.0 TRUE eco 1803 2304649 C->T NCOD eco V_5 0.000000000 0.095238095 0.034482759 0.263157895 0.000000000 0.041666667 0.045454545 0.055555556 0.071428571 0.000000000 0.047619048 40.0 21.0 29.0 19.0 18.0 24.0 22.0 18.0 28.0 13.0 21.0 TRUE eco 1803 2304649 C->T NCOD eco V_6 0.000000000 0.200000000 0.192307692 0.166666667 0.074074074 0.066666667 0.250000000 0.071428571 0.166666667 0.038461538 0.333333333 40.0 20.0 26.0 6.0 27.0 15.0 4.0 14.0 6.0 26.0 12.0 TRUE npr 1834 3348018 G->T NSYN 53 18 R->L E_6 0.000000000 0.000000000 0.012195122 0.013605442 0.011764706 0.061728395 0.087912088 0.257425743 0.133858268 0.100000000 0.023076923 207.0 106.0 82.0 147.0 85.0 162.0 91.0 101.0 127.0 30.0 130.0 FALSE ftsI 1936 92257 A->C NSYN 845 282 N->T S_1 0.000000000 0.000000000 0.000000000 0.169491525 0.305970149 0.066666667 0.839285714 0.807692308 0.951923077 0.968992248 0.950704225 183.0 74.0 136.0 118.0 134.0 60.0 112.0 130.0 104.0 129.0 142.0 TRUE prpB 1945 348476 G->A NCOD prpB S_1 0.000000000 0.000000000 0.000000000 0.000000000 0.028037383 0.042553191 0.459677419 0.143835616 0.057692308 0.158273381 0.166666667 198.0 90.0 129.0 110.0 107.0 47.0 124.0 146.0 104.0 139.0 150.0 FALSE ydhT 1976 1749011 G->C NSYN 549 183 D->E S_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.030769231 0.359154930 0.576923077 0.577922078 0.637037037 224.0 97.0 149.0 111.0 113.0 67.0 130.0 142.0 104.0 154.0 135.0 FALSE trkH 2072 4033607 G->A NSYN 463 155 V->M S_1 0.007092199 0.244897959 0.528455285 0.561797753 0.297297297 0.369565217 1.000000000 1.000000000 1.000000000 0.976377953 0.967479675 141.0 49.0 123.0 89.0 74.0 46.0 87.0 137.0 81.0 127.0 123.0 TRUE trkH 2072 4033607 G->A NSYN 463 155 V->M S_2 0.007092199 0.239583333 0.600000000 0.466666667 0.396039604 0.304347826 0.992307692 1.000000000 0.972727273 1.000000000 0.977272727 141.0 96.0 80.0 60.0 101.0 69.0 130.0 115.0 110.0 122.0 132.0 TRUE trkH 2072 4033607 G->A NSYN 463 155 V->M S_5 0.007092199 0.305343511 0.787610619 0.780821918 0.713043478 0.646017699 0.983739837 0.990654206 0.985815603 0.990000000 0.993006993 141.0 131.0 113.0 73.0 115.0 113.0 123.0 107.0 141.0 100.0 143.0 TRUE cytR 2076 4124080 C->T NSYN 377 126 G->D S_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.017241379 0.041666667 0.560000000 0.539215686 0.664062500 0.635714286 146.0 56.0 135.0 107.0 83.0 58.0 96.0 100.0 102.0 128.0 140.0 TRUE fimD 2102 4545070 C->T NCOD fimD fimI S_2 0.000000000 0.000000000 0.015384615 0.089552239 0.297029703 0.346666667 0.994047619 0.979865772 1.000000000 0.993827160 0.988700565 202.0 83.0 130.0 67.0 101.0 75.0 168.0 149.0 120.0 162.0 177.0 TRUE fimD 2102 4545070 C->T NCOD fimD fimI S_3 0.000000000 0.000000000 0.021978022 0.000000000 0.000000000 0.300000000 0.187919463 0.296703297 0.064102564 0.093750000 0.218045113 202.0 100.0 91.0 138.0 69.0 90.0 149.0 182.0 156.0 192.0 133.0 TRUE fimD 2102 4545070 C->T NCOD fimD fimI Y_1 0.000000000 0.000000000 0.008771930 0.195121951 0.653061224 0.807692308 0.780000000 0.899441341 0.956834532 0.971631206 0.823529412 185.0 72.0 114.0 82.0 98.0 52.0 200.0 179.0 139.0 141.0 136.0 TRUE fimD 2102 4545070 C->T NCOD fimD fimI Y_4 0.000000000 0.000000000 0.000000000 0.007092199 0.829629630 0.933962264 0.828571429 0.949494949 0.897637795 0.983870968 0.972477064 185.0 101.0 130.0 141.0 135.0 106.0 105.0 99.0 127.0 124.0 109.0 TRUE fimD 2102 4545070 C->T NCOD fimD fimI A_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.076023392 0.085937500 0.293333333 0.218309859 154.0 141.0 160.0 83.0 107.0 54.0 178.0 171.0 128.0 150.0 142.0 TRUE arcA 2107 4640260 C->T NSYN 47 16 R->H S_1 0.000000000 0.000000000 0.120481928 0.366666667 0.117117117 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 228.0 88.0 166.0 120.0 111.0 70.0 146.0 160.0 125.0 192.0 190.0 TRUE arcA 2107 4640260 C->T NSYN 47 16 R->H V_5 0.000000000 0.000000000 0.000000000 0.000000000 0.025974026 0.595505618 0.014851485 0.000000000 0.009389671 0.000000000 0.000000000 233.0 269.0 186.0 125.0 154.0 178.0 202.0 154.0 213.0 77.0 197.0 TRUE ftsW 2150 98599 C->T NSYN 197 66 A->V S_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.010752688 0.000000000 0.040000000 0.622950820 0.942857143 0.915662651 264.0 194.0 147.0 102.0 160.0 93.0 204.0 150.0 122.0 175.0 166.0 TRUE ftsW 2150 98599 C->T NSYN 197 66 A->V Y_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.005747126 0.000000000 0.011173184 0.843434343 0.977777778 215.0 168.0 187.0 165.0 164.0 155.0 174.0 220.0 179.0 198.0 180.0 TRUE pdxB 2189 2437680 G->T NSYN 172 58 P->T S_2 0.000000000 0.000000000 0.000000000 0.081632653 0.272727273 0.250000000 0.913043478 0.961538462 1.000000000 0.972602740 0.968421053 114.0 71.0 88.0 49.0 88.0 40.0 92.0 78.0 72.0 73.0 95.0 FALSE arcB 2211 3351677 A->G NSYN 1349 450 I->T S_2 0.000000000 0.000000000 0.265060241 0.224137931 0.137614679 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 174.0 102.0 83.0 58.0 109.0 75.0 129.0 87.0 131.0 139.0 135.0 FALSE cytR 2237 4123956 G->T NSYN 501 167 D->E S_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.027027027 0.735714286 0.638655462 0.775510204 1.000000000 0.984615385 177.0 83.0 107.0 76.0 108.0 74.0 140.0 119.0 98.0 129.0 130.0 TRUE idnD 2256 4494288 C->A NSYN 119 40 C->F S_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.051948052 0.264367816 0.190789474 0.579831933 0.936305732 0.876811594 239.0 112.0 123.0 69.0 116.0 77.0 174.0 152.0 119.0 157.0 138.0 FALSE ftsW 2295 99426 G->C NSYN 1024 342 G->R S_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.355555556 0.529411765 0.827586207 0.767123288 0.686274510 171.0 87.0 68.0 119.0 51.0 55.0 90.0 119.0 116.0 146.0 102.0 TRUE cmtA 2396 3078837 G->T NSYN 23 8 A->E S_3 0.000000000 0.028735632 0.127516779 0.054216867 0.010204082 0.000000000 0.358823529 0.614754098 0.819587629 0.825783972 0.717791411 366.0 174.0 149.0 166.0 98.0 124.0 170.0 244.0 194.0 287.0 163.0 FALSE trkH 2439 4033698 T->A NSYN 554 185 L->Q S_3 0.000000000 0.141509434 0.142857143 0.040322581 0.000000000 0.000000000 0.475000000 0.453608247 0.902777778 0.811965812 0.575757576 101.0 106.0 63.0 124.0 48.0 40.0 80.0 97.0 72.0 117.0 99.0 TRUE trkH 2439 4033698 T->A NSYN 554 185 L->Q Y_1 0.000000000 0.666666667 0.802469136 0.957746479 0.901098901 0.891891892 0.884615385 0.953271028 0.990566038 1.000000000 0.974025974 116.0 60.0 81.0 71.0 91.0 37.0 104.0 107.0 106.0 83.0 77.0 TRUE hcp 2485 913849 G->A NCOD hcp ybjE S_3 0.000000000 0.128787879 0.079646018 0.056910569 0.000000000 0.000000000 0.365079365 0.387500000 0.814432990 0.781818182 0.533333333 186.0 132.0 113.0 123.0 91.0 82.0 126.0 160.0 97.0 165.0 105.0 TRUE flgD 2495 1132507 T->C SYN 654 218 T->T S_3 0.000000000 0.000000000 0.000000000 0.358208955 0.680555556 0.370786517 0.218978102 0.333333333 0.016393443 0.088607595 0.198113208 203.0 129.0 76.0 134.0 72.0 89.0 137.0 153.0 122.0 158.0 106.0 FALSE 2505 3352949 indel;-60 S_3 0.000000000 0.000000000 0.000000000 0.480439259 0.560224090 0.485678705 0.309139785 0.299366724 0.052199851 0.104281010 0.296846011 217.6 131.8 100.9 145.7 71.4 80.3 148.8 173.7 134.1 182.2 107.8 FALSE kgtP 2575 2726010 indel;A-1 NCOD kgtP rrfG S_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.015625000 0.133333333 0.364406780 173.0 116.0 115.0 124.0 102.0 129.0 163.0 122.0 128.0 120.0 118.0 FALSE cytR 2601 4123456 C->A NSYN 1001 334 R->L S_4 0.000000000 0.009708738 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.007812500 0.120567376 0.481481481 194.0 103.0 115.0 86.0 152.0 137.0 234.0 135.0 128.0 141.0 162.0 TRUE cytR 2603 4123822 C->T NSYN 635 212 R->H S_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.220689655 0.544303797 0.127388535 220.0 128.0 108.0 126.0 122.0 106.0 215.0 144.0 145.0 158.0 157.0 TRUE kdpD 2616 722998 A->G NSYN 1417 473 S->P S_4 0.000000000 0.122448980 0.441666667 0.480314961 0.564356436 0.650684932 0.960893855 0.955357143 0.982456140 0.974358974 0.983870968 256.0 147.0 120.0 127.0 101.0 146.0 179.0 112.0 114.0 117.0 124.0 FALSE fimD 2623 4545100 C->T NSYN 5 2 S->L S_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.008695652 0.702857143 0.839694656 0.899224806 0.939393939 0.974576271 171.0 146.0 88.0 95.0 104.0 115.0 175.0 131.0 129.0 132.0 118.0 TRUE fimD 2623 4545100 C->T NSYN 5 2 S->L V_5 0.000000000 0.004310345 0.000000000 0.000000000 0.000000000 0.053846154 0.458563536 0.140186916 0.069444444 0.116883117 0.000000000 189.0 232.0 139.0 120.0 116.0 130.0 181.0 107.0 144.0 77.0 179.0 TRUE arcA 2632 4640071 A->T NSYN 236 79 F->Y S_4 0.000000000 0.000000000 0.000000000 0.045871560 0.328125000 0.360655738 0.014778325 0.000000000 0.007142857 0.000000000 0.000000000 240.0 150.0 99.0 109.0 128.0 122.0 203.0 131.0 140.0 123.0 121.0 TRUE 2650 2948979 indel;-78 S_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.184108527 0.493119266 0.083125520 177.0 105.8 89.1 91.3 103.2 126.4 149.0 100.3 103.2 87.2 120.3 FALSE insE1 2662 314350 T->G NCOD insE1 S_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.006944444 0.019354839 0.206106870 0.231707317 197.0 199.0 172.0 120.0 195.0 172.0 183.0 144.0 155.0 131.0 164.0 FALSE ftsE 2712 3602333 A->G NSYN 415 139 S->P S_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.056910569 0.557894737 0.853846154 135.0 102.0 100.0 65.0 101.0 97.0 145.0 99.0 123.0 95.0 130.0 FALSE dnaX 2729 493136 G->A NSYN 1045 349 V->I S_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.051282051 0.524390244 0.860759494 156.0 98.0 77.0 69.0 81.0 90.0 87.0 80.0 117.0 82.0 79.0 FALSE ftsA 2761 104952 T->G NSYN 971 324 V->G S_6 0.000000000 0.000000000 0.000000000 0.000000000 0.008403361 0.000000000 0.000000000 0.000000000 0.035087719 0.403973510 0.535483871 198.0 111.0 161.0 103.0 119.0 120.0 121.0 130.0 114.0 151.0 155.0 FALSE trkH 2828 4033602 T->G NSYN 458 153 L->R S_6 0.000000000 0.321428571 0.756097561 0.861111111 0.732558140 0.675000000 0.956140351 0.972477064 0.990990991 1.000000000 0.970370370 150.0 84.0 123.0 72.0 86.0 120.0 114.0 109.0 111.0 162.0 135.0 TRUE bglJ 2855 4604322 T->G NSYN 163 55 S->A S_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.034285714 0.222222222 0.219653179 0.160220994 0.079812207 0.047619048 267.0 193.0 222.0 142.0 184.0 175.0 216.0 173.0 181.0 213.0 252.0 FALSE 2874 2890921 indel;-9 S_6 0.000000000 0.000000000 0.000000000 0.302593660 0.330882353 0.374100719 0.255033557 0.440476190 0.590000000 0.593548387 0.773333333 147.5 62.4 89.5 69.4 54.4 69.5 74.5 84.0 100.0 77.5 75.0 FALSE ftsW 2891 99475 T->C NSYN 1073 358 V->A Y_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.006622517 0.007633588 0.528301887 0.190000000 191.0 74.0 107.0 87.0 97.0 68.0 166.0 151.0 131.0 106.0 100.0 TRUE topB 2919 1845729 A->C NSYN 1232 411 L->R Y_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.020979021 0.024000000 0.037037037 0.217391304 191.0 93.0 120.0 78.0 88.0 58.0 139.0 143.0 125.0 108.0 92.0 FALSE ftsP 2954 3162341 C->T NSYN 329 110 G->D Y_1 0.000000000 0.000000000 0.009259259 0.000000000 0.000000000 0.013513514 0.000000000 0.014285714 0.024793388 0.187500000 0.412371134 141.0 77.0 108.0 115.0 103.0 74.0 115.0 140.0 121.0 112.0 97.0 TRUE cytR 2984 4123705 indel;C-1 FRAMESHIFT 752 Y_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.019736842 0.152439024 0.324324324 0.049586777 0.021276596 158.0 77.0 134.0 85.0 116.0 76.0 152.0 164.0 148.0 121.0 94.0 TRUE cytR 2985 4124413 A->G NSYN 44 15 V->A Y_1 0.000000000 0.024691358 0.000000000 0.000000000 0.000000000 0.000000000 0.022988506 0.243421053 0.223140496 0.228346457 0.568965517 184.0 81.0 113.0 84.0 86.0 72.0 174.0 152.0 121.0 127.0 116.0 TRUE rnb 3067 1348534 A->T NSYN 379 127 W->R Y_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.069767442 0.101351351 0.303370787 0.500000000 0.596774194 0.588709677 164.0 118.0 196.0 101.0 128.0 86.0 148.0 178.0 128.0 124.0 124.0 TRUE rnb 3068 1348839 A->C NSYN 74 25 V->G Y_2 0.000000000 0.000000000 0.000000000 0.000000000 0.013513514 0.032258065 0.229729730 0.153153153 0.116279070 0.173913043 0.138888889 97.0 52.0 129.0 61.0 74.0 31.0 74.0 111.0 86.0 69.0 72.0 TRUE 3073 1647872 T->C Y_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.168918919 0.368055556 0.189655172 0.355072464 0.128378378 199.0 112.0 124.0 68.0 112.0 72.0 148.0 144.0 116.0 138.0 148.0 FALSE trkH 3125 4033608 T->A NSYN 464 155 V->E Y_2 0.000000000 0.185714286 0.212121212 0.055555556 0.613636364 0.490909091 0.134020619 0.019108280 0.000000000 0.000000000 0.000000000 133.0 70.0 132.0 72.0 88.0 55.0 97.0 157.0 98.0 116.0 96.0 TRUE cytR 3131 4123852 C->T NSYN 605 202 R->H Y_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.006134969 0.319727891 0.403846154 0.490066225 221.0 124.0 175.0 117.0 108.0 66.0 189.0 163.0 147.0 156.0 151.0 TRUE ybeM 3148 657524 A->G NCOD ybeM pagP Y_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.034188034 0.192660550 0.185185185 0.293333333 126.0 98.0 167.0 65.0 81.0 49.0 106.0 117.0 109.0 108.0 75.0 FALSE icd 3164 1196220 C->T SYN 1098 366 H->H Y_2 0.000000000 0.000000000 0.016483516 0.030000000 0.000000000 0.000000000 0.145833333 0.272108844 0.193333333 0.358974359 0.164772727 190.0 150.0 182.0 100.0 131.0 75.0 144.0 147.0 150.0 156.0 176.0 TRUE icd 3164 1196220 C->T SYN 1098 366 H->H P_5 0.000000000 0.009523810 0.005405405 0.024390244 0.031250000 0.023529412 0.000000000 0.116504854 0.204301075 0.183908046 0.042105263 167.0 105.0 185.0 123.0 128.0 85.0 58.0 103.0 93.0 174.0 95.0 TRUE icd 3165 1196232 C->T SYN 1110 370 T->T Y_2 0.000000000 0.000000000 0.010928962 0.028846154 0.000000000 0.000000000 0.088235294 0.211267606 0.144827586 0.274074074 0.157575758 180.0 137.0 183.0 104.0 135.0 76.0 136.0 142.0 145.0 135.0 165.0 TRUE icd 3166 1196245 T->C SYN 1123 375 L->L Y_2 0.000000000 0.000000000 0.005747126 0.031250000 0.000000000 0.000000000 0.074626866 0.169230769 0.138888889 0.238461538 0.114649682 186.0 109.0 174.0 96.0 121.0 79.0 134.0 130.0 144.0 130.0 157.0 TRUE 3183 4021934 indel;-17 Y_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.081300813 0.219512195 0.139194139 176.0 121.5 112.1 90.6 145.5 70.0 140.0 145.5 123.0 123.0 136.5 FALSE 3184 4123823 indel;-8 Y_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.156695157 0.420988408 0.262751159 0.301568154 0.152394775 192.8 117.4 178.3 112.7 114.9 76.4 140.4 163.9 129.4 165.8 137.8 FALSE 3184 4123823 indel;-8 Y_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.010010010 0.265306122 0.218531469 0.246343341 0.111199365 192.8 115.9 114.3 106.3 134.4 84.4 99.9 98.0 114.4 129.9 125.9 FALSE ftsW 3189 98943 C->A NSYN 541 181 P->T Y_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.245901639 0.787610619 0.920863309 0.881118881 1.000000000 203.0 106.0 171.0 131.0 180.0 122.0 113.0 139.0 143.0 206.0 TRUE cytR 3240 4124401 G->T NSYN 56 19 A->E Y_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.075000000 0.663793103 0.660550459 0.875000000 174.0 82.0 195.0 120.0 170.0 113.0 120.0 116.0 109.0 160.0 TRUE rpoC 3243 4186794 C->A NSYN 1445 482 A->E Y_3 0.000000000 0.000000000 0.000000000 0.000000000 0.021276596 0.256578947 0.000000000 0.000000000 0.000000000 0.000000000 183.0 152.0 232.0 149.0 235.0 152.0 163.0 147.0 116.0 163.0 TRUE ydjI 3315 1857323 G->A SYN 447 149 G->G Y_4 0.000000000 0.000000000 0.012578616 0.008695652 0.842767296 0.965909091 0.858695652 0.931506849 0.857142857 0.934065934 0.975000000 193.0 144.0 159.0 115.0 159.0 88.0 92.0 73.0 105.0 91.0 80.0 FALSE yafL 3419 247214 A->G NSYN 503 168 N->S Y_5 0.000000000 0.000000000 0.014705882 0.294520548 0.518072289 0.369127517 0.146341463 0.253846154 0.142857143 0.014285714 0.116788321 162.0 110.0 136.0 146.0 166.0 149.0 123.0 130.0 175.0 140.0 137.0 FALSE sapA 3421 1356297 A->T NSYN 814 272 W->R Y_5 0.000000000 0.000000000 0.000000000 0.044943820 0.181818182 0.582278481 0.723684211 0.723684211 0.927835052 0.956521739 0.888888889 113.0 77.0 117.0 89.0 99.0 79.0 76.0 76.0 97.0 92.0 81.0 TRUE trkA 3446 3436947 C->A NSYN 430 144 Q->K Y_5 0.000000000 0.000000000 0.000000000 0.218934911 0.162280702 0.111607143 0.033175355 0.000000000 0.000000000 0.000000000 0.004830918 230.0 162.0 189.0 169.0 228.0 224.0 211.0 216.0 212.0 181.0 207.0 FALSE trkH 3449 4033572 T->C NSYN 428 143 I->T Y_5 0.000000000 0.000000000 0.007575758 0.217741935 0.476190476 0.428571429 0.164383562 0.319148936 0.097014925 0.023809524 0.088050314 149.0 90.0 132.0 124.0 189.0 147.0 146.0 141.0 134.0 126.0 159.0 TRUE 3454 4209685 C->A NCRNA Y_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.324675325 0.752941176 0.419753086 0.372093023 0.109589041 0.000000000 74.0 65.0 61.0 67.0 81.0 77.0 85.0 81.0 86.0 73.0 69.0 FALSE glyX 3456 4391527 C->T NCOD glyX Y_5 0.000000000 0.000000000 0.004000000 0.000000000 0.000000000 0.000000000 0.048888889 0.245833333 0.091787440 0.028169014 0.113138686 252.0 209.0 250.0 207.0 285.0 250.0 225.0 240.0 207.0 213.0 274.0 FALSE clpX 3458 458028 C->G NSYN 603 201 D->E Y_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.158192090 0.857142857 0.808641975 194.0 149.0 182.0 161.0 190.0 148.0 187.0 157.0 177.0 140.0 162.0 FALSE fimD 3465 4545086 C->A NCOD fimD fimI Y_5 0.000000000 0.016000000 0.617647059 0.400000000 0.323170732 0.510489510 0.800000000 0.798742138 0.936170213 0.966942149 0.896296296 166.0 125.0 136.0 120.0 164.0 143.0 155.0 159.0 141.0 121.0 135.0 TRUE sapA 3487 1356239 A->T NSYN 872 291 L->Q Y_6 0.000000000 0.000000000 0.000000000 0.021978022 0.109375000 0.303030303 0.604395604 0.793103448 0.880597015 0.956043956 0.985294118 115.0 74.0 78.0 91.0 64.0 66.0 91.0 87.0 67.0 91.0 68.0 TRUE yhjA 3529 3667934 C->T NSYN 1255 419 V->M Y_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.641975309 0.788321168 175.0 128.0 138.0 122.0 100.0 133.0 174.0 218.0 142.0 162.0 137.0 FALSE spoT 3533 3824444 C->A NSYN 2045 682 A->E Y_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.089552239 0.543046358 0.818181818 0.869565217 0.977941176 0.990909091 129.0 108.0 75.0 116.0 87.0 134.0 151.0 154.0 92.0 136.0 110.0 FALSE trkH 3536 4034352 C->A NSYN 1208 403 A->D Y_6 0.006211180 0.000000000 0.000000000 0.014084507 0.324561404 0.473684211 0.040697674 0.042553191 0.011627907 0.000000000 0.000000000 161.0 142.0 138.0 142.0 114.0 133.0 172.0 188.0 172.0 187.0 131.0 TRUE fimI 3550 4542986 indel;A-1 NCOD fimI fimE Y_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.350000000 0.105263158 0.214285714 0.000000000 0.133333333 184.0 53.0 27.0 29.0 38.0 28.0 20.0 38.0 14.0 13.0 15.0 FALSE fimA 3551 4543317 A->C NSYN 203 68 E->A Y_6 0.000000000 0.000000000 0.000000000 0.007407407 0.000000000 0.007092199 0.267605634 0.137724551 0.110294118 0.028248588 0.007575758 161.0 164.0 113.0 135.0 107.0 141.0 142.0 167.0 136.0 177.0 132.0 TRUE hcp 3556 913831 G->A NCOD hcp ybjE Y_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.466292135 0.876811594 0.975409836 0.980769231 154.0 183.0 204.0 215.0 158.0 173.0 186.0 178.0 138.0 122.0 104.0 TRUE ydcI 3590 1494483 C->T NSYN 589 197 V->M V_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.196531792 0.283464567 0.062500000 0.008333333 0.000000000 194.0 117.0 123.0 68.0 128.0 77.0 173.0 127.0 112.0 120.0 90.0 TRUE ydcI 3591 1494618 C->T NSYN 454 152 D->N V_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.183206107 0.262711864 0.153846154 0.054263566 0.022222222 181.0 78.0 109.0 58.0 151.0 101.0 131.0 118.0 117.0 129.0 90.0 TRUE flu 3603 2071308 G->T NCOD flu yoeA V_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.005235602 0.312925170 0.402912621 0.550335570 291.0 151.0 89.0 100.0 100.0 163.0 190.0 191.0 147.0 206.0 149.0 FALSE rcsB 3617 2316706 G->A NSYN 530 177 R->H V_1 0.000000000 0.269230769 0.977272727 1.000000000 0.992000000 0.971153846 1.000000000 1.000000000 0.991803279 0.991666667 0.988095238 155.0 78.0 88.0 71.0 125.0 104.0 129.0 98.0 122.0 120.0 84.0 FALSE hslO 3654 3530306 A->C NSYN 533 178 Q->P V_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.010638298 0.000000000 0.172839506 0.437500000 0.518518519 116.0 52.0 93.0 35.0 92.0 47.0 94.0 79.0 81.0 64.0 54.0 TRUE cytR 3673 4123775 T->G NSYN 682 228 T->P V_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.381355932 0.344444444 192.0 97.0 155.0 64.0 128.0 87.0 123.0 111.0 113.0 118.0 90.0 TRUE fimA 3696 4543518 C->A NSYN 404 135 T->K V_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.155172414 0.227941176 0.071428571 0.008196721 200.0 96.0 107.0 82.0 143.0 94.0 130.0 116.0 136.0 140.0 122.0 TRUE yhdJ 3785 3411620 G->T NCOD yhdJ dusB V_2 0.000000000 0.000000000 0.389312977 0.189473684 0.567164179 0.900000000 0.663793103 0.134615385 0.020134228 0.000000000 0.005917160 230.0 99.0 131.0 95.0 134.0 90.0 116.0 104.0 149.0 121.0 169.0 TRUE yhdJ 3785 3411620 G->T NCOD yhdJ dusB V_3 0.000000000 0.000000000 0.560439560 0.412698413 0.637254902 0.360465116 0.533742331 0.711956522 0.939849624 0.878306878 0.596491228 230.0 115.0 182.0 63.0 102.0 86.0 163.0 184.0 133.0 189.0 114.0 TRUE rpoA 3786 3440068 C->T STOPGAIN 962 321 W->X V_2 0.000000000 0.000000000 0.071895425 0.434343434 0.180124224 0.055045872 0.000000000 0.000000000 0.000000000 0.000000000 0.006896552 238.0 105.0 153.0 99.0 161.0 109.0 115.0 105.0 153.0 104.0 145.0 TRUE rpoA 3786 3440068 C->T STOPGAIN 962 321 W->X V_4 0.000000000 0.286666667 0.979591837 1.000000000 0.995633188 0.981707317 1.000000000 1.000000000 1.000000000 0.994350282 0.981566820 238.0 150.0 147.0 115.0 229.0 164.0 142.0 159.0 181.0 177.0 217.0 TRUE rpoA 3786 3440068 C->T STOPGAIN 962 321 W->X V_5 0.000000000 0.331491713 0.156250000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 238.0 181.0 128.0 148.0 147.0 140.0 262.0 162.0 239.0 84.0 173.0 TRUE tufA 3787 3471374 C->A NCOD tufA fusA V_2 0.000000000 0.000000000 0.000000000 0.006289308 0.095693780 0.020547945 0.000000000 0.731250000 0.482412060 0.748538012 0.802030457 269.0 108.0 130.0 159.0 209.0 146.0 188.0 160.0 199.0 171.0 197.0 TRUE tufA 3787 3471374 C->A NCOD tufA fusA V_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.012048193 0.145348837 0.000000000 0.000000000 0.000000000 0.285714286 269.0 233.0 211.0 59.0 140.0 83.0 172.0 190.0 131.0 210.0 217.0 TRUE hslO 3789 3529864 A->C NSYN 91 31 I->L V_2 0.000000000 0.000000000 0.009389671 0.367816092 0.169811321 0.071428571 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 173.0 57.0 213.0 87.0 106.0 70.0 122.0 103.0 146.0 105.0 163.0 TRUE rpoC 3804 4189438 C->A STOPGAIN 4089 1363 Y->X V_2 0.000000000 0.000000000 0.238095238 0.261261261 0.180000000 0.036585366 0.000000000 0.934782609 0.983333333 0.989473684 0.993103448 166.0 63.0 147.0 111.0 100.0 82.0 91.0 92.0 120.0 95.0 145.0 TRUE ybeD 3816 662471 C->A NSYN 172 58 V->L V_2 0.000000000 0.974137931 0.877192982 0.544000000 0.780104712 0.895104895 0.000000000 0.963190184 0.984210526 0.994117647 0.991596639 288.0 116.0 171.0 125.0 191.0 143.0 162.0 163.0 190.0 170.0 238.0 TRUE lptE 3817 671886 T->A NSYN 301 101 I->F V_2 0.000000000 0.971428571 0.885542169 0.475247525 0.731707317 0.904255319 0.000000000 1.000000000 0.984251969 1.000000000 0.993506494 222.0 70.0 166.0 101.0 123.0 94.0 140.0 119.0 127.0 113.0 154.0 FALSE fimD 3828 4545086 C->T NCOD fimD fimI V_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.047619048 0.000000000 0.150000000 0.495934959 0.186440678 0.239263804 188.0 42.0 165.0 84.0 103.0 63.0 116.0 100.0 123.0 118.0 163.0 TRUE yjtD 3832 4640346 T->A NCOD yjtD creD V_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.848101266 0.000000000 0.078740157 0.000000000 0.028368794 0.009049774 247.0 72.0 187.0 124.0 156.0 79.0 151.0 127.0 155.0 141.0 221.0 FALSE aroH 3896 1789035 G->A NSYN 601 201 A->T V_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.410596026 0.370370370 0.412790698 0.238805970 209.0 115.0 167.0 72.0 71.0 90.0 165.0 151.0 135.0 172.0 67.0 FALSE guaD 3936 3026919 A->C NSYN 1154 385 E->A V_3 0.000000000 0.000000000 0.000000000 0.137254902 0.084745763 0.372093023 0.008333333 0.266129032 0.009090909 0.105263158 0.111111111 111.0 70.0 152.0 51.0 59.0 43.0 120.0 124.0 110.0 114.0 54.0 FALSE yhdJ 3959 3411599 C->A NCOD yhdJ dusB V_3 0.000000000 0.000000000 0.005376344 0.000000000 0.000000000 0.632183908 0.000000000 0.205263158 0.014492754 0.099502488 0.028846154 233.0 123.0 186.0 57.0 110.0 87.0 155.0 190.0 138.0 201.0 104.0 TRUE yhdJ 3959 3411599 C->A NCOD yhdJ dusB V_6 0.000000000 0.000000000 0.000000000 0.033333333 0.585937500 0.204819277 0.010638298 0.000000000 0.000000000 0.000000000 0.000000000 233.0 103.0 172.0 60.0 128.0 83.0 94.0 137.0 46.0 210.0 88.0 TRUE 3960 3419873 T->A V_3 0.000000000 0.000000000 0.000000000 0.000000000 0.009523810 0.049382716 0.000000000 0.728643216 0.844594595 0.899122807 0.318181818 237.0 148.0 210.0 87.0 105.0 81.0 191.0 199.0 148.0 228.0 154.0 FALSE cytR 3984 4124465 C->A NCOD cytR priA V_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.438356164 0.404958678 0.492537313 0.318681319 161.0 88.0 164.0 57.0 73.0 64.0 157.0 146.0 121.0 134.0 91.0 TRUE ybeD 4004 662513 T->G NSYN 130 44 T->P V_3 0.000000000 0.021621622 0.501976285 0.520547945 0.529411765 0.230769231 0.003861004 0.598039216 0.910569106 0.861445783 0.368421053 325.0 185.0 253.0 73.0 153.0 91.0 259.0 204.0 123.0 166.0 133.0 TRUE ybeD 4005 662552 C->T NSYN 91 31 V->M V_3 0.000000000 0.093525180 0.197309417 0.393939394 0.469026549 0.800000000 0.000000000 0.285714286 0.093220339 0.085526316 0.010309278 241.0 139.0 223.0 66.0 113.0 60.0 198.0 189.0 118.0 152.0 97.0 TRUE rnb 4045 1348722 A->G NSYN 191 64 I->T V_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.086666667 0.074074074 0.721088435 110.0 83.0 90.0 70.0 133.0 80.0 69.0 93.0 150.0 108.0 147.0 TRUE mutH 4064 2969167 G->T NCOD mutH V_4 0.000000000 0.003164557 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.152343750 0.276162791 0.753246753 354.0 316.0 353.0 223.0 465.0 308.0 309.0 347.0 256.0 344.0 77.0 FALSE hslO 4067 3529976 A->T NSYN 203 68 Q->L V_4 0.000000000 0.000000000 0.969465649 0.977011494 0.994535519 1.000000000 0.992424242 0.984962406 1.000000000 0.993243243 0.994011976 169.0 132.0 131.0 87.0 183.0 124.0 132.0 133.0 177.0 148.0 167.0 TRUE sapD 4121 1352926 C->T NSYN 703 235 G->S V_5 0.000000000 0.027777778 0.274853801 0.983471074 0.731034483 0.907894737 0.984251969 1.000000000 0.992592593 0.985294118 1.000000000 209.0 180.0 171.0 121.0 145.0 152.0 127.0 103.0 135.0 68.0 165.0 FALSE ftsP 4142 3162408 T->A STOPGAIN 262 88 K->X V_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.047244094 0.256410256 0.514492754 0.819672131 0.711111111 120.0 129.0 99.0 110.0 84.0 86.0 127.0 117.0 138.0 61.0 135.0 TRUE dusB 4143 3411208 T->G NSYN 929 310 L->R V_5 0.000000000 0.000000000 0.000000000 0.014705882 0.000000000 0.000000000 0.066147860 0.496503497 0.258620690 0.268292683 0.282051282 209.0 155.0 142.0 136.0 119.0 125.0 257.0 143.0 174.0 82.0 156.0 FALSE tufA 4144 3470536 A->T NSYN 794 265 L->Q V_5 0.000000000 0.000000000 0.255924171 0.982832618 0.754464286 0.917293233 1.000000000 1.000000000 0.996784566 1.000000000 1.000000000 308.0 292.0 211.0 233.0 224.0 266.0 425.0 293.0 311.0 199.0 274.0 TRUE cytR 4150 4123560 indel;C-1 FRAMESHIFT 897 V_5 0.000000000 0.000000000 0.000000000 0.000000000 0.170000000 0.189473684 0.485436893 0.832214765 0.881443299 0.930555556 0.953020134 196.0 158.0 136.0 122.0 100.0 95.0 206.0 149.0 194.0 72.0 149.0 TRUE ybcK 4155 569155 G->T NSYN 254 85 S->I V_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.032258065 0.163522013 0.562264151 0.701863354 0.753926702 397.0 268.0 210.0 263.0 212.0 300.0 279.0 159.0 265.0 161.0 191.0 FALSE ybeD 4156 662605 G->A NSYN 38 13 T->I V_5 0.000000000 0.005714286 0.541353383 0.013793103 0.192307692 0.036764706 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 201.0 175.0 133.0 145.0 104.0 136.0 170.0 113.0 140.0 83.0 140.0 TRUE yjhB 4161 4503693 C->T NCOD yjhB V_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.048780488 0.475728155 0.136363636 0.056074766 0.020408163 0.003623188 332.0 393.0 236.0 261.0 257.0 287.0 309.0 242.0 321.0 196.0 276.0 FALSE 4171 2175882 indel;-5 V_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.013422819 0.008968610 0.363636364 0.542635659 152.9 128.0 113.0 101.5 104.0 100.0 107.5 74.5 111.5 60.5 129.0 FALSE rpoD 4283 3213363 G->A NSYN 317 106 G->D V_6 0.000000000 0.255102041 0.012500000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 159.0 98.0 160.0 71.0 122.0 83.0 79.0 148.0 30.0 153.0 63.0 TRUE yhdJ 4287 3411621 C->A NCOD yhdJ dusB V_6 0.000000000 0.000000000 0.000000000 0.000000000 0.014084507 0.047619048 0.275510204 0.204225352 0.000000000 0.043269231 0.026666667 229.0 111.0 171.0 72.0 142.0 84.0 98.0 142.0 44.0 208.0 75.0 TRUE tufA 4289 3471374 C->T NCOD tufA fusA V_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.244565217 0.135135135 0.147368421 0.165289256 269.0 175.0 255.0 125.0 231.0 153.0 130.0 184.0 74.0 285.0 121.0 TRUE fusA 4290 3471617 C->A NSYN 1898 633 G->V V_6 0.000000000 0.000000000 0.000000000 0.000000000 0.053333333 0.421052632 0.012195122 0.029629630 0.000000000 0.000000000 0.000000000 208.0 108.0 178.0 86.0 150.0 95.0 82.0 135.0 44.0 212.0 69.0 TRUE hslO 4294 3529960 G->A NSYN 187 63 G->S V_6 0.000000000 0.011494253 0.315789474 0.807017544 0.292929293 0.533333333 0.984375000 0.930000000 1.000000000 0.987804878 1.000000000 183.0 87.0 152.0 57.0 99.0 75.0 64.0 100.0 29.0 164.0 55.0 TRUE ybeD 4360 662450 T->G NSYN 193 65 T->P V_6 0.000000000 0.006756757 0.508620690 0.024096386 0.635416667 0.500000000 0.058823529 0.018750000 0.000000000 0.000000000 0.000000000 267.0 148.0 232.0 83.0 192.0 156.0 102.0 160.0 74.0 191.0 90.0 TRUE gyrA 4470 2339291 C->T NSYN 130 44 V->I A_1 0.000000000 0.000000000 0.000000000 0.007751938 0.010869565 0.597938144 0.923076923 0.982142857 0.988023952 0.992307692 205.0 136.0 71.0 129.0 92.0 97.0 117.0 112.0 167.0 130.0 FALSE argK 4487 3063510 A->C NSYN 524 175 Q->P A_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.858585859 1.000000000 0.991304348 1.000000000 145.0 142.0 48.0 102.0 88.0 81.0 99.0 103.0 115.0 106.0 FALSE tufA 4548 3471330 G->T NCOD tufA fusA A_1 0.000000000 0.000000000 0.006172840 0.000000000 0.000000000 0.000000000 0.000000000 0.294460641 0.470394737 0.456375839 243.0 300.0 162.0 296.0 220.0 304.0 306.0 343.0 304.0 298.0 TRUE tufA 4548 3471330 G->T NCOD tufA fusA A_4 0.000000000 0.401015228 0.995833333 0.990990991 0.977375566 1.000000000 0.987704918 0.993846154 1.000000000 1.000000000 0.993617021 243.0 197.0 240.0 222.0 221.0 236.0 244.0 325.0 304.0 334.0 470.0 TRUE rpoB 4569 4180962 G->T NCOD rpoB rplJ A_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.907692308 0.990000000 0.983333333 0.984848485 127.0 144.0 45.0 84.0 46.0 72.0 65.0 100.0 120.0 66.0 FALSE rpsA 4607 962939 C->A NSYN 945 315 N->K A_1 0.000000000 0.000000000 0.000000000 0.870967742 0.606557377 0.611940299 1.000000000 0.980582524 0.988095238 0.965517241 144.0 132.0 65.0 62.0 61.0 67.0 74.0 103.0 84.0 58.0 TRUE narQ 4656 2586365 C->A NSYN 635 212 A->E A_2 0.000000000 0.000000000 0.007462687 0.000000000 0.000000000 0.000000000 0.006802721 0.008620690 0.009433962 0.252032520 0.153846154 112.0 113.0 134.0 66.0 84.0 38.0 147.0 116.0 106.0 123.0 91.0 FALSE tufA 4689 3471270 G->A SYN 60 20 H->H A_2 0.004081633 0.970238095 0.962365591 0.991735537 0.983606557 1.000000000 0.995555556 0.984984985 0.991071429 0.991150442 0.993421053 245.0 168.0 186.0 121.0 122.0 95.0 225.0 333.0 224.0 226.0 152.0 TRUE rpmE 4707 4127203 T->C NSYN 191 64 F->S A_2 0.000000000 0.000000000 0.000000000 0.596491228 0.816666667 0.676470588 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 85.0 93.0 137.0 57.0 60.0 34.0 151.0 105.0 95.0 72.0 95.0 FALSE nrdR 4717 433256 A->T NSYN 255 85 E->D A_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.030769231 0.069767442 0.112359551 0.211111111 0.767676768 97.0 91.0 98.0 59.0 57.0 20.0 130.0 86.0 89.0 90.0 99.0 FALSE rpsF 4722 4425358 A->G NSYN 241 81 N->D A_2 0.000000000 0.000000000 0.000000000 0.007812500 0.061403509 0.192307692 0.918918919 0.863013699 0.939130435 0.751724138 0.896000000 181.0 147.0 183.0 128.0 114.0 78.0 185.0 146.0 115.0 145.0 125.0 TRUE rpsA 4729 963530 C->A NSYN 1536 512 N->K A_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.013513514 0.215686275 0.156626506 118.0 108.0 109.0 91.0 84.0 39.0 147.0 108.0 74.0 51.0 83.0 TRUE 4739 3315405 indel;-21 A_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.269360269 0.141206675 78.4 93.8 100.7 61.5 52.9 21.6 131.0 70.4 77.5 59.4 77.9 FALSE 4740 3411206 indel;-9 A_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.080495356 0.713692946 133.5 147.5 166.5 112.0 87.0 58.5 177.5 212.0 162.5 161.5 120.5 FALSE 4743 3960893 indel;-48 A_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.020040080 0.013888889 0.046573520 0.066420664 0.264900662 0.119402985 147.8 125.5 135.7 104.1 88.9 49.9 144.0 150.3 135.5 90.6 134.0 FALSE rplS 4825 2744223 C->G NSYN 308 103 R->P A_3 0.000000000 0.000000000 0.000000000 0.030000000 0.615853659 0.969230769 0.780303030 0.938775510 1.000000000 0.989583333 1.000000000 232.0 183.0 245.0 100.0 164.0 65.0 132.0 196.0 127.0 192.0 159.0 FALSE ansB 4846 3099842 G->A NSYN 887 296 P->L A_3 0.000000000 0.000000000 0.000000000 0.000000000 0.710937500 0.931818182 0.800000000 0.974747475 0.981132075 0.991150442 0.982456140 125.0 177.0 171.0 58.0 128.0 44.0 100.0 198.0 106.0 113.0 114.0 FALSE tufA 4865 3471246 C->T SYN 84 28 L->L A_3 0.000000000 0.000000000 0.448979592 0.971014493 0.993788820 0.962264151 0.994505495 0.997512438 1.000000000 0.997167139 1.000000000 206.0 342.0 294.0 69.0 161.0 53.0 182.0 402.0 216.0 353.0 324.0 TRUE fimA 4920 4543503 C->A NSYN 389 130 T->K A_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.503816794 0.639344262 0.605442177 166.0 220.0 223.0 78.0 167.0 72.0 135.0 221.0 131.0 183.0 147.0 TRUE torS 4933 1054640 C->T SYN 1539 513 S->S A_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.027777778 0.082644628 0.298076923 0.279569892 0.166666667 0.216666667 134.0 168.0 207.0 59.0 127.0 36.0 121.0 208.0 93.0 168.0 120.0 FALSE lhr 4969 1730428 G->A NSYN 1342 448 A->T A_4 0.000000000 0.000000000 0.000000000 0.000000000 0.006622517 0.000000000 0.000000000 0.000000000 0.007751938 0.015503876 0.447513812 188.0 99.0 230.0 146.0 151.0 184.0 122.0 112.0 129.0 129.0 181.0 FALSE infB 4997 3313449 G->A NSYN 2566 856 R->C A_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.070866142 0.248704663 0.128654971 0.329032258 0.319277108 0.155339806 198.0 90.0 167.0 150.0 136.0 127.0 193.0 171.0 155.0 166.0 206.0 FALSE rpsF 5024 4425363 T->G NSYN 246 82 D->E A_4 0.000000000 0.000000000 0.000000000 0.142857143 0.650000000 0.707964602 0.254777070 0.767441860 0.688000000 0.620437956 0.865921788 177.0 88.0 158.0 161.0 120.0 113.0 157.0 172.0 125.0 137.0 179.0 TRUE relA 5071 2912594 G->A NSYN 1058 353 A->V A_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.217741935 0.850877193 198.0 103.0 180.0 153.0 166.0 131.0 106.0 193.0 156.0 124.0 114.0 TRUE yhdJ 5079 3411600 G->T NCOD yhdJ dusB A_5 0.000000000 0.000000000 0.262773723 0.995098039 0.989655172 0.989323843 0.982578397 0.995098039 0.991891892 1.000000000 0.996336996 196.0 220.0 274.0 204.0 290.0 281.0 287.0 408.0 370.0 323.0 273.0 TRUE yhdJ 5079 3411600 G->T NCOD yhdJ dusB P_2 0.000000000 0.000000000 0.000000000 0.398230088 0.323741007 0.075187970 0.626168224 0.963768116 1.000000000 186.0 114.0 134.0 113.0 139.0 133.0 107.0 138.0 156.0 TRUE yhjV 5081 3700991 T->C SYN 429 143 A->A A_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.801470588 0.429347826 0.338709677 0.190476190 0.015151515 183.0 111.0 201.0 137.0 174.0 145.0 136.0 184.0 186.0 147.0 198.0 FALSE gyrB 5084 3879459 C->A NSYN 661 221 G->C A_5 0.000000000 0.000000000 0.000000000 0.046511628 0.383333333 0.154545455 0.012658228 0.000000000 0.000000000 0.000000000 0.000000000 108.0 65.0 134.0 86.0 120.0 110.0 79.0 140.0 170.0 119.0 117.0 FALSE rpsF 5093 4425191 A->G NSYN 74 25 Y->C A_5 0.000000000 0.000000000 0.430167598 0.989361702 0.960629921 0.992424242 0.965517241 0.993902439 0.993055556 1.000000000 1.000000000 191.0 125.0 179.0 94.0 127.0 132.0 87.0 164.0 144.0 115.0 129.0 TRUE fimD 5096 4545073 G->C NCOD fimD fimI A_5 0.000000000 0.000000000 0.000000000 0.000000000 0.006060606 0.000000000 0.000000000 0.485875706 0.615384615 0.807692308 0.978260870 153.0 99.0 167.0 122.0 165.0 132.0 128.0 177.0 169.0 104.0 138.0 TRUE aceE 5105 123097 A->G SYN 81 27 E->E A_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.039473684 0.333333333 0.379629630 0.032407407 0.066929134 239.0 211.0 203.0 128.0 233.0 143.0 228.0 219.0 216.0 216.0 254.0 FALSE rpsB 5107 190183 T->C NSYN 310 104 W->R A_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.136690647 0.379629630 0.346938776 0.044117647 0.064814815 121.0 123.0 118.0 62.0 113.0 85.0 139.0 108.0 147.0 136.0 108.0 FALSE rspA 5117 1654227 C->T SYN 915 305 S->S A_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.203389831 0.157407407 0.201342282 0.728971963 0.740740741 192.0 150.0 140.0 99.0 154.0 126.0 118.0 108.0 149.0 107.0 108.0 FALSE yiiS 5151 4113002 A->G SYN 36 12 G->G A_6 0.000000000 0.000000000 0.006289308 0.014354067 0.050746269 0.000000000 0.387692308 0.523809524 0.351535836 0.066901408 0.025280899 315.0 257.0 318.0 209.0 335.0 225.0 325.0 315.0 293.0 284.0 356.0 FALSE ybbW 5156 538719 C->T NSYN 1087 363 P->S A_6 0.000000000 0.008695652 0.000000000 0.000000000 0.000000000 0.000000000 0.065693431 0.285714286 0.312500000 0.017241379 0.043478261 179.0 115.0 99.0 96.0 121.0 110.0 137.0 119.0 144.0 116.0 115.0 FALSE ybeF 5160 660703 C->T NSYN 676 226 G->S A_6 0.000000000 0.000000000 0.000000000 0.000000000 0.006329114 0.000000000 0.000000000 0.000000000 0.082278481 0.790209790 0.798449612 167.0 128.0 171.0 117.0 158.0 125.0 172.0 173.0 158.0 143.0 129.0 FALSE rpsF 5161 4425361 G->T NSYN 244 82 D->Y A_6 0.000000000 0.622222222 0.962264151 0.990384615 0.994413408 1.000000000 1.000000000 0.993865031 0.994652406 1.000000000 1.000000000 181.0 135.0 159.0 104.0 179.0 103.0 156.0 163.0 187.0 170.0 162.0 TRUE fimA 5164 4543496 G->A NSYN 382 128 D->N A_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.037433155 0.353658537 0.434146341 0.020270270 0.022222222 180.0 139.0 156.0 93.0 144.0 127.0 187.0 164.0 205.0 148.0 180.0 TRUE ymgC 5210 1216981 A->G SYN 234 78 E->E P_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.006535948 0.380487805 0.358024691 0.000000000 377.0 123.0 164.0 115.0 92.0 177.0 194.0 153.0 205.0 162.0 182.0 FALSE ydcP 5217 1506135 C->T NCOD ydcP P_1 0.000000000 0.000000000 0.000000000 0.138461538 0.295774648 0.201388889 0.008130081 0.035294118 0.010101010 0.057142857 0.000000000 153.0 80.0 122.0 65.0 71.0 144.0 123.0 85.0 99.0 105.0 82.0 FALSE idi 5269 3033211 C->T SYN 147 49 T->T P_1 0.000000000 0.000000000 0.023076923 0.000000000 0.012820513 0.022556391 0.325925926 0.235294118 0.609929078 0.621359223 0.000000000 194.0 82.0 130.0 80.0 78.0 133.0 135.0 119.0 141.0 103.0 137.0 FALSE rpoD 5275 3213379 G->T NSYN 333 111 L->F P_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.012738854 0.377777778 0.120000000 0.614754098 0.619047619 0.000000000 164.0 83.0 124.0 69.0 81.0 157.0 135.0 125.0 122.0 126.0 112.0 TRUE tufA 5282 3471401 G->A NCOD tufA fusA P_1 0.000000000 0.175324675 0.949275362 0.967741935 0.958762887 0.870588235 0.630434783 0.730769231 0.311926606 0.326086957 0.000000000 218.0 154.0 138.0 93.0 97.0 170.0 230.0 182.0 218.0 184.0 205.0 TRUE rpsG 5283 3473955 T->G NSYN 145 49 T->P P_1 0.000000000 0.025641026 0.937500000 0.989361702 0.986486486 0.914772727 0.590604027 0.668918919 0.340000000 0.328125000 0.007194245 199.0 117.0 96.0 94.0 74.0 176.0 149.0 148.0 150.0 128.0 139.0 TRUE rpsG 5284 3474123 G->A NCOD rpsG rpsL P_1 0.000000000 0.000000000 0.029126214 0.012500000 0.000000000 0.087591241 0.251968504 0.322580645 0.583941606 0.660377358 0.000000000 200.0 96.0 103.0 80.0 76.0 137.0 127.0 124.0 137.0 106.0 116.0 TRUE wecB 5346 3970657 C->A SYN 507 169 T->T P_1 0.000000000 0.011764706 0.000000000 0.493506494 0.781609195 0.851239669 0.635135135 0.750000000 0.380165289 0.358974359 0.000000000 176.0 85.0 115.0 77.0 87.0 121.0 148.0 116.0 121.0 117.0 129.0 FALSE trkH 5351 4033629 G->A NSYN 467 156 G->D P_1 0.000000000 0.032258065 0.010869565 0.000000000 0.036363636 0.022727273 0.222222222 0.307692308 0.625000000 0.635294118 0.000000000 151.0 62.0 92.0 44.0 55.0 132.0 63.0 104.0 88.0 85.0 78.0 TRUE trkH 5351 4033629 G->A NSYN 467 156 G->D P_5 0.000000000 0.000000000 0.000000000 0.643835616 0.538461538 0.489583333 0.905660377 1.000000000 0.991452991 0.977443609 0.991379310 151.0 84.0 98.0 73.0 78.0 96.0 53.0 94.0 117.0 133.0 116.0 TRUE argC 5364 4155968 C->T NSYN 950 317 A->V P_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.058823529 0.175182482 0.258333333 0.112903226 0.000000000 174.0 94.0 117.0 72.0 88.0 150.0 153.0 137.0 120.0 124.0 143.0 FALSE ybfC 5394 736037 indel;C-1 FRAMESHIFT 388 P_1 0.000000000 0.000000000 0.008196721 0.310810811 0.246153846 0.118750000 0.012578616 0.000000000 0.000000000 0.000000000 0.000000000 192.0 80.0 122.0 74.0 65.0 160.0 159.0 124.0 154.0 129.0 117.0 FALSE fimA 5412 4543255 C->A NSYN 123 41 N->K P_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.009174312 0.129032258 0.306930693 0.009009009 199.0 93.0 120.0 85.0 75.0 154.0 121.0 109.0 124.0 101.0 111.0 TRUE fimD 5415 4545104 C->T NCOD fimD fimI P_1 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.009615385 0.373831776 0.238636364 0.000000000 151.0 70.0 92.0 47.0 48.0 119.0 110.0 104.0 107.0 88.0 82.0 TRUE trkG 5472 1424257 G->A NSYN 476 159 G->D P_2 0.000000000 0.000000000 0.000000000 0.005617978 0.000000000 0.000000000 0.480769231 0.762195122 0.848958333 341.0 207.0 198.0 178.0 210.0 182.0 156.0 164.0 192.0 FALSE rpsG 5500 3473769 G->A NSYN 331 111 R->C P_2 0.000000000 0.926229508 0.977611940 0.973333333 0.991803279 0.989898990 1.000000000 0.991304348 0.987804878 158.0 122.0 134.0 75.0 122.0 99.0 111.0 115.0 164.0 TRUE rpsG 5500 3473769 G->A NSYN 331 111 R->C P_3 0.000000000 0.971428571 0.991379310 0.986486486 1.000000000 0.992700730 0.991304348 0.986842105 0.963963964 158.0 175.0 116.0 74.0 140.0 137.0 115.0 152.0 111.0 TRUE rpsG 5500 3473769 G->A NSYN 331 111 R->C P_5 0.000000000 0.971153846 0.976744186 0.992307692 0.976377953 0.990654206 0.962500000 0.959731544 0.962264151 0.994897959 0.977443609 158.0 104.0 129.0 130.0 127.0 107.0 80.0 149.0 106.0 196.0 133.0 TRUE rpsL 5501 3474637 G->T NCOD rpsL tusB P_2 0.000000000 0.000000000 0.147727273 0.589928058 0.963636364 0.909090909 0.970588235 0.992957746 0.989795918 239.0 174.0 176.0 139.0 55.0 11.0 102.0 142.0 196.0 TRUE trkH 5533 4033235 G->A NSYN 73 25 G->R P_2 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.330357143 0.163043478 0.000000000 0.000000000 167.0 110.0 116.0 104.0 147.0 112.0 92.0 123.0 142.0 TRUE rpoC 5543 4185506 C->T NSYN 139 47 R->C P_3 0.000000000 0.000000000 0.584070796 1.000000000 0.971631206 0.990000000 0.976923077 0.991596639 1.000000000 172.0 174.0 113.0 54.0 141.0 100.0 130.0 119.0 93.0 TRUE dauA 5582 1260896 C->A NCOD dauA prs P_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.008928571 0.048000000 0.532110092 151.0 179.0 91.0 50.0 111.0 120.0 112.0 125.0 109.0 FALSE amiC 5594 2948908 G->A STOPGAIN 103 35 Q->X P_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.838983051 0.919642857 0.951219512 142.0 161.0 97.0 65.0 156.0 120.0 118.0 112.0 82.0 FALSE argG 5603 3318331 C->T NCOD argG P_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.612403101 0.679487179 0.728155340 200.0 161.0 112.0 59.0 146.0 117.0 129.0 156.0 103.0 FALSE tufA 5609 3471303 G->T SYN 45 15 V->V P_3 0.000000000 0.005681818 0.010000000 0.358974359 0.731884058 0.821428571 0.037878788 0.028409091 0.010869565 230.0 176.0 100.0 78.0 138.0 140.0 132.0 176.0 92.0 TRUE trkH 5632 4033628 G->T NSYN 466 156 G->C P_3 0.000000000 0.000000000 0.000000000 0.205882353 0.186567164 0.175438596 0.945054945 0.988764045 0.954022989 148.0 161.0 114.0 68.0 134.0 114.0 91.0 89.0 87.0 TRUE fimD 5656 4545070 A->C NCOD fimD fimI P_3 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.137404580 0.214285714 0.305084746 205.0 182.0 119.0 73.0 134.0 133.0 131.0 140.0 118.0 TRUE yjiT 5658 4572351 C->T NCOD yjiT yjiS P_3 0.000000000 0.000000000 0.000000000 0.197916667 0.324675325 0.384180791 0.000000000 0.008695652 0.000000000 250.0 132.0 88.0 96.0 77.0 177.0 121.0 230.0 131.0 FALSE gatB 5699 2174456 G->T SYN 111 37 I->I P_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.015748031 0.316831683 232.0 236.0 248.0 187.0 146.0 151.0 155.0 125.0 161.0 127.0 101.0 FALSE recB 5709 2955130 G->T NSYN 874 292 R->S P_4 0.000000000 0.000000000 0.000000000 0.000000000 0.170940171 0.112244898 0.132812500 0.312500000 0.486725664 0.376237624 0.611764706 146.0 139.0 160.0 135.0 117.0 98.0 128.0 144.0 113.0 101.0 85.0 FALSE plsC 5712 3163272 G->T SYN 210 70 I->I P_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.068062827 0.122448980 0.084967320 0.554621849 244.0 215.0 234.0 163.0 187.0 167.0 164.0 191.0 147.0 153.0 119.0 FALSE trkH 5728 4033221 C->T NSYN 59 20 T->I P_4 0.000000000 0.000000000 0.017142857 0.808695652 0.773049645 0.867469880 0.975206612 1.000000000 0.974137931 0.967213115 1.000000000 163.0 125.0 175.0 115.0 141.0 83.0 121.0 178.0 116.0 122.0 79.0 TRUE cytR 5740 4123676 G->A STOPGAIN 799 267 Q->X P_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.018072289 0.074324324 0.286713287 0.242105263 123.0 113.0 153.0 104.0 125.0 83.0 150.0 166.0 148.0 143.0 95.0 TRUE cysQ 5750 4437404 C->A NSYN 632 211 A->D P_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.013698630 0.012987013 0.505154639 147.0 117.0 166.0 118.0 119.0 102.0 132.0 160.0 146.0 154.0 97.0 FALSE fimD 5755 4545085 C->A NCOD fimD fimI P_4 0.000000000 0.000000000 0.000000000 0.000000000 0.168674699 0.154545455 0.134751773 0.322916667 0.533742331 0.470588235 0.660869565 176.0 156.0 150.0 146.0 166.0 110.0 141.0 192.0 163.0 136.0 115.0 TRUE fabF 5766 1151865 G->T NCOD fabF fabG P_4 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.341772152 0.422222222 0.335820896 0.263636364 0.523255814 0.433333333 94.0 106.0 132.0 72.0 99.0 79.0 90.0 134.0 110.0 86.0 60.0 FALSE prs 5785 1260945 C->T NSYN 931 311 A->T P_5 0.000000000 0.000000000 0.007299270 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.013698630 0.760000000 150.0 121.0 137.0 109.0 153.0 101.0 42.0 84.0 66.0 146.0 100.0 FALSE relA 5829 2912763 G->C NSYN 889 297 H->D P_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.078431373 0.429530201 0.406504065 0.399061033 0.122093023 214.0 165.0 180.0 149.0 124.0 140.0 102.0 149.0 123.0 213.0 172.0 TRUE tufA 5851 3471344 C->T NSYN 4 2 A->T P_5 0.000000000 0.000000000 0.075757576 0.050000000 0.310344828 0.492307692 0.112068966 0.018867925 0.038167939 0.008810573 0.000000000 203.0 125.0 198.0 160.0 145.0 130.0 116.0 159.0 131.0 227.0 146.0 TRUE fusA 5852 3472820 A->T NSYN 713 238 L->Q P_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.070175439 0.230769231 0.148387097 0.803738318 110.0 81.0 89.0 95.0 68.0 78.0 72.0 114.0 91.0 155.0 107.0 TRUE rpsL 5853 3474639 C->A NCOD rpsL tusB P_5 0.000000000 0.000000000 0.456140351 0.858267717 0.660818713 0.563063063 0.831683168 0.936416185 0.974358974 0.983606557 0.990338164 207.0 140.0 228.0 127.0 171.0 222.0 101.0 173.0 156.0 244.0 207.0 TRUE citA 5912 653826 C->T NSYN 1592 531 T->I P_5 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.021978022 0.092857143 0.200000000 0.227027027 0.753424658 227.0 146.0 209.0 152.0 159.0 161.0 91.0 140.0 110.0 185.0 146.0 FALSE fimD 5924 4545054 G->T NCOD fimD fimI P_5 0.000000000 0.000000000 0.000000000 0.007299270 0.033333333 0.389937107 0.520000000 0.804878049 0.979591837 0.858108108 0.967479675 183.0 118.0 129.0 137.0 120.0 159.0 75.0 123.0 98.0 148.0 123.0 TRUE rpsG 6016 3473744 C->T NSYN 356 119 R->H P_6 0.000000000 0.777777778 0.008130081 0.004379562 0.011678832 0.001522070 0.001494768 0.000000000 0.000000000 0.003115265 0.000000000 168.0 162.0 615.0 685.0 685.0 657.0 669.0 486.0 649.0 642.0 662.0 TRUE trkH 6044 4033352 C->G NSYN 190 64 L->V P_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.163120567 0.046153846 0.220472441 0.228260870 0.363636364 129.0 142.0 90.0 135.0 93.0 113.0 141.0 65.0 127.0 92.0 165.0 TRUE trkH 6045 4033638 A->T NSYN 476 159 Q->L P_6 0.000000000 0.000000000 0.000000000 0.000000000 0.137254902 0.647058824 0.812030075 0.962962963 0.689655172 0.671232877 0.618320611 155.0 132.0 71.0 106.0 102.0 85.0 133.0 54.0 116.0 73.0 131.0 TRUE adiY 6057 4337676 G->T NSYN 272 91 P->Q P_6 0.000000000 0.011627907 0.240310078 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 280.0 258.0 129.0 232.0 200.0 216.0 211.0 104.0 221.0 148.0 241.0 FALSE fimA 6066 4543335 A->G NSYN 203 68 E->G P_6 0.000000000 0.011834320 0.000000000 0.000000000 0.000000000 0.000000000 0.337748344 0.300000000 0.266666667 0.204545455 0.198473282 182.0 169.0 94.0 108.0 115.0 75.0 151.0 70.0 120.0 88.0 131.0 TRUE fimD 6067 4545104 C->A NCOD fimD fimI P_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.155038760 0.042857143 0.150943396 0.252747253 0.395683453 151.0 139.0 96.0 106.0 109.0 76.0 129.0 70.0 106.0 91.0 139.0 TRUE rne 6081 1144303 T->A NSYN 65 22 Q->L P_6 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.048076923 0.133333333 0.213592233 147.0 157.0 92.0 127.0 108.0 104.0 80.0 55.0 104.0 75.0 103.0 FALSE tufA ChrAmp V_1 TRUE tufA ChrAmp V_3 TRUE tufA ChrAmp V_5 TRUE tufA ChrAmp P_4 TRUE tufA ChrAmp P_6 TRUE tufA ChrAmp A_1 TRUE tufA ChrAmp A_2 TRUE tufA ChrAmp A_3 TRUE tufA ChrAmp A_4 TRUE tufA ChrAmp A_5 TRUE tufA ChrAmp A_6 TRUE