TABLE 1_Microbiome Analyses,,,,,,
Data using QIIME 2 (v. 2018.2),,,,,,
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Week_7_Faith's_PD,,,,,,
Kruskal-Wallis (all groups),,,,,,
,Result,,,,,
H,7.712125576,,,,,
p-value,0.052351375,,,,,
,,,,,,
Kruskal-Wallis (pairwise),,,,,,
Group 1,Group 2,H,p-value,q-value,,
CON (n=8),C-MBG* (n=8),0.540441,0.46225,0.46225,,
,MBG (n=7**),2.263393,0.132464,0.198695,,
,MBG-R* (n=8),4.411765,0.035692,0.107076,,
C-MBG* (n=8),MBG (n=7**),2.625,0.105193,0.198695,,
,MBG-R* (n=8),4.411765,0.035692,0.107076,,
MBG (n=7**),MBG-R* (n=8),1.084821,0.297621,0.357146,,
,,,,,,
"*Individual mice prior to reversal diet. At this timepoint CMBG = CON, MBGR = MBG",,,,,,
** Fecal sample not collected for one MBG mouse,,,,,,
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Week_11_Unweighted_UniFrac_Distances,,,,,,
PERMANOVA results,,,,,,
method name,PERMANOVA,,,,,
test statistic name,pseudo-F,,,,,
sample size,32,,,,,
number of groups,4,,,,,
test statistic,2.12131,,,,,
p-value,0.001,,,,,
number of permutations,999,,,,,
,,,,,,
Pairwise permanova results,,,,,,
Group 1,Group 2,Sample size,Permutations,pseudo-F,p-value,q-value
CON,C-MBG,16,999,2.2426,0.001,0.0015
,MBG,16,999,2.885136,0.001,0.0015
,MBG-R,16,999,1.688551,0.006,0.006
C-MBG,MBG,16,999,1.60447,0.002,0.0024
,MBG-R,16,999,2.025079,0.001,0.0015
MBG,MBG-R,16,999,2.238985,0.001,0.0015
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Week_11_Faith's_PD,,,,,,
Kruskal-Wallis (all groups),,,,,,
,Result,,,,,
H,9.042613636,,,,,
p-value,0.028729648,,,,,
,,,,,,
Kruskal-Wallis (pairwise),,,,,,
Group 1,Group 2,H,p-value,q-value,,
CON (n=8),C-MBG (n=8),1.863971,0.172167,0.258251,,
,MBG (n=8),6.352941,0.011719,0.054846,,
,MBG-R (n=8),0.099265,0.752714,0.903257,,
C-MBG (n=8),MBG (n=7),4.863971,0.027423,0.054846,,
,MBG-R (n=8),0.011029,0.916359,0.916359,,
MBG (n=8),MBG-R (n=8),4.863971,0.027423,0.054846,,