Biological_Pathway_ID RFI Name Source p-value q-value Bonferroni q-value FDR B&H q-value FDR B&Y Hit Count in Query List Hit Count in Genome Hit in Query List M8626 LOW Members of the BCR signaling pathway MSigDB C2 BIOCARTA (v6.0) 9.04E-08 2.78E-04 2.78E-04 2.39E-03 22 46 "BAD,NFATC1,NFATC2,CD19,CD22,CD81,PDPK1,PIK3CA,PIK3CD,PIK3R1,PPP3CA,PPP3CB,CSK,DAG1,AKT3,SOS1,GRB2,GSK3A,VAV1,ITPR1,ITPR2,ITPR3" 983748 LOW cGMP-PKG signaling pathway BioSystems: KEGG 2.18E-06 6.70E-03 3.35E-03 2.88E-02 47 163 "ADCY2,MEF2A,ADCY5,ADCY9,SLC25A4,RHOA,ATP2A1,ATP2A2,ATP2B1,ATP2B2,ATP2B4,MYLK,BAD,NFATC1,NFATC2,NFATC3,NFATC4,NOS3,CACNA1C,NPR1,MEF2B,PDE2A,PDE3B,PLCB4,CNGB1,CREB5,PPP3CA,PPP3CB,PRKCE,PRKG1,MYLK3,CALML4,AKT3,EDNRA,ROCK1,SLC8A2,SLC8A1,SLC8A3,PLCB1,ATP1B4,PIK3R5,VASP,INSR,ITPR1,ITPR2,ITPR3,KCNMA1" 952858 LOW Platelet activation BioSystems: KEGG 3.35E-06 1.03E-02 3.43E-03 2.95E-02 38 123 "ADCY2,ADCY5,ADCY9,PIK3R3,RHOA,MYLK,SNAP23,NOS3,PLA2G4E,PIK3CA,PIK3CD,PIK3R1,PLCB4,COL1A2,PRKG1,MYLK3,TLN2,AKT3,RAP1B,ROCK1,FCER1G,FCGR2A,FGB,FGG,FYN,SRC,STIM1,PLCB1,TBXAS1,ARHGAP35,PIK3R5,VASP,VWF,ITGA2,ITGB1,ITPR1,ITPR2,ITPR3" 952859 LOW Oxytocin signaling pathway BioSystems: KEGG 1.18E-05 3.64E-02 7.82E-03 6.73E-02 43 153 "ADCY2,ADCY5,ADCY9,RHOA,MYLK,NFATC1,NFATC2,NFATC3,NFATC4,NOS3,CACNA1C,CACNA2D1,NPR1,PLA2G4E,CACNA2D2,PLCB4,PPP3CA,PPP3CB,PRKAB1,PRKCA,PRKCB,MYLK3,CALML4,RCAN1,CACNG7,EGFR,ROCK1,RYR2,RYR3,CACNG2,PRKAG2,CACNG4,CACNA2D3,SRC,PLCB1,GNAO1,PIK3R5,ITPR1,ITPR2,ITPR3,KCNJ6,KCNJ9,CAMK1D" P00031 LOW Inflammation mediated by chemokine and cytokine signaling pathway PantherDB 2.06E-05 6.32E-02 7.82E-03 6.73E-02 50 191 "ACTA2,ADCY2,ADCY5,CCR2,PREX1,MYH7B,RHOA,ARRB1,MYH6,MYH10,MYH11,MYLK,NFATC1,NFATC2,NFATC3,NFATC4,PAK2,CDC42,PDPK1,PIK3CA,PIK3CD,PLCB4,PLCL1,PRKCB,PRKCE,MYLK3,RAC1,AKT3,ARPC3,MYH14,ROCK1,PLCE1,PAK4,RRAS,CCL5,ARPC1A,CXCR6,SOS1,CCL27,GNG12,PLCL2,PLCB1,VAV1,VWF,INPPL1,ITGB1,ITPR1,ITPR2,ITPR3,SOCS4" 1269443 LOW Signalling by NGF BioSystems: REACTOME 2.26E-05 6.93E-02 7.82E-03 6.73E-02 104 483 "PIK3AP1,ABR,MARK3,ACTN2,ADCY2,MEF2A,ADCY5,ADCY9,ADORA2A,KIDINS220,AP2A1,AP2A2,AP2B1,PIP5K1B,FOXO4,PREX1,ANGPT1,FGD2,PIK3R3,RHOA,ARRB1,BAD,NF1,SQSTM1,NGFR,NTRK1,NTRK2,KSR2,CD19,PAQR3,PCSK5,PDE1A,PDPK1,PIK3CA,PIK3CD,PIK3R1,PIP4K2A,CLTC,ARHGEF6,PSMF1,CRKL,PPP2R1A,PPP2R5C,PPP2R5E,CSK,DNM3,PRKAR1A,PRKAR2A,PRKCA,PRKCE,ARHGEF4,ARHGEF26,DAB2IP,PSMB2,PSMB7,ARHGEF38,PSMC6,PSMD3,PSMD4,PTK2,PSMD6,PTPRA,RAC1,DNM2,RALB,AKT3,RAP1B,RANBP9,AKAP9,EGFR,CNKSR1,NET1,OBSCN,FGB,FGG,FOXO1,ARHGEF15,MTOR,FYN,SOS1,AGO2,SPTAN1,SRC,FRS2,FGD4,ARHGEF9,TNRC6A,GRB2,GRIN2D,GSK3A,TSC2,VAV1,VAV2,VCL,VWF,YWHAB,IL2RG,INSR,ITPR1,ITPR2,ITPR3,JAK1,KIT,RASGEF1A" 1269341 LOW Platelet homeostasis BioSystems: REACTOME 2.46E-05 7.55E-02 7.82E-03 6.73E-02 29 91 "APOB,ATP2A1,ATP2A2,ATP2B1,ATP2B2,ATP2B4,NOS3,P2RX7,PDE1A,PDE2A,PDE3B,PDE9A,PECAM1,PPP2R1A,PPP2R5C,PPP2R5E,PRKG1,SLC8A2,SLC8A1,SLC8A3,PDE10A,STIM1,GNG12,ITPR1,LRP8,ITPR2,ITPR3,KCNMA1,TRPC7" 1269460 LOW NGF signalling via TRKA from the plasma membrane BioSystems: REACTOME 2.71E-05 8.32E-02 7.82E-03 6.73E-02 87 390 "PIK3AP1,MARK3,ACTN2,ADCY2,MEF2A,ADCY5,ADCY9,ADORA2A,KIDINS220,AP2A1,AP2A2,AP2B1,PIP5K1B,FOXO4,ANGPT1,PIK3R3,RHOA,ARRB1,BAD,NF1,NTRK1,NTRK2,KSR2,CD19,PAQR3,PDE1A,PDPK1,PIK3CA,PIK3CD,PIK3R1,PIP4K2A,CLTC,PSMF1,CRKL,PPP2R1A,PPP2R5C,PPP2R5E,CSK,DNM3,PRKAR1A,PRKAR2A,PRKCA,PRKCE,DAB2IP,PSMB2,PSMB7,PSMC6,PSMD3,PSMD4,PTK2,PSMD6,PTPRA,DNM2,RALB,AKT3,RAP1B,RANBP9,AKAP9,EGFR,CNKSR1,FGB,FGG,FOXO1,MTOR,FYN,SOS1,AGO2,SPTAN1,SRC,FRS2,TNRC6A,GRB2,GRIN2D,GSK3A,TSC2,VAV1,VCL,VWF,YWHAB,IL2RG,INSR,ITPR1,ITPR2,ITPR3,JAK1,KIT,RASGEF1A" P00009 LOW Axon guidance mediated by netrin PantherDB 2.90E-05 8.92E-02 7.82E-03 6.73E-02 14 30 "PIK3R3,NFATC2,NFATC3,NFATC4,CDC42,PIK3CA,PIK3CD,PIK3R1,NTN1,RAC1,NTNG1,PIK3R5,VASP,ABLIM1" M5193 LOW Genes related to chemotaxis MSigDB C2 BIOCARTA (v6.0) 2.95E-05 9.06E-02 7.82E-03 6.73E-02 18 45 "MYLK,PAK2,CDC42,PDPK1,PIK3CA,PIK3CD,PIK3R1,AKT3,ACTR2,ROCK1,PAK4,GDI2,PIK3R5,INPPL1,ITPR1,ITPR2,ITPR3,LIMK1" 83067 LOW Focal adhesion BioSystems: KEGG 3.17E-05 9.74E-02 7.82E-03 6.73E-02 51 199 "PIK3R3,ITGA8,BIRC3,RHOA,MYLK,BAD,PAK2,CDC42,PDPK1,PIK3CA,PIK3CD,PIK3R1,MYLPF,COL1A2,COL4A6,CRKL,PRKCA,PRKCB,RELN,PTK2,MYLK3,TLN2,RAC1,AKT3,RAP1B,EGFR,ROCK1,PAK4,SHC4,FYN,SOS1,SRC,GRB2,ARHGAP35,THBS4,TNR,TNXB,VASP,VAV1,VAV2,VCL,VWF,TNC,IGF1R,ITGA6,ITGA1,ITGA2,ITGB1,ITGB6,LAMA3,LAMA5" 137961 LOW EPHA2 forward signaling BioSystems: Pathway Interaction Database 3.25E-05 9.99E-02 7.82E-03 6.73E-02 10 17 "RHOA,CBL,PIK3CA,PIK3R1,RAC1,SRC,GRB2,ARHGAP35,VAV2,INPPL1" 946598 LOW Thyroid hormone signaling pathway BioSystems: KEGG 3.69E-05 1.13E-01 7.82E-03 6.73E-02 34 116 "NCOA3,MED30,PIK3R3,NCOA1,ATP2A2,MYH6,BAD,SLCO1C1,NOTCH2,PDPK1,PIK3CA,PIK3CD,PIK3R1,PLCB4,MED17,CREBBP,NCOR1,PRKCA,PRKCB,MED13,AKT3,RCAN1,EP300,PLCE1,ESR1,MED12L,FOXO1,SLC9A1,MTOR,SRC,PLCB1,ATP1B4,THRB,TSC2" 1269508 LOW Rho GTPase cycle BioSystems: REACTOME 3.76E-05 1.16E-01 7.82E-03 6.73E-02 40 145 "ABR,ARHGAP20,PREX1,FGD2,ARHGAP23,RHOA,ARHGAP42,MYO9A,OPHN1,CDC42,CHN2,ARHGEF6,RHOD,ARHGEF4,DEPDC7,ARHGEF26,ARHGAP32,ARHGEF38,RHOBTB1,ARHGAP44,RAC1,ARHGAP10,NET1,OBSCN,GMIP,DLC1,SYDE2,ARAP1,ARHGEF15,SOS1,ARHGAP26,GDI2,FGD4,ARHGEF9,SRGAP2,ARHGAP35,VAV1,VAV2,RHOT2,ARHGAP12" 799177 LOW Estrogen signaling pathway BioSystems: KEGG 4.24E-05 1.30E-01 7.82E-03 6.73E-02 30 98 "ADCY2,ADCY5,ADCY9,MMP2,PIK3R3,NOS3,OPRM1,PIK3CA,PIK3CD,PIK3R1,PLCB4,GABBR2,CREB5,CALML4,AKT3,EGFR,ESR1,SHC4,SOS1,SRC,PLCB1,GNAO1,GRB2,GRM1,HSP90B1,ITPR1,ITPR2,ITPR3,KCNJ6,KCNJ9" M295 LOW Genes related to PIP3 signaling in cardiac myocytes MSigDB C2 BIOCARTA (v6.0) 4.52E-05 1.39E-01 7.82E-03 6.73E-02 23 67 "PREX1,BAD,PAK2,CDC42,CDK2,PDPK1,PIK3CA,PIK3CD,CREB5,PTK2,AKT3,PAK4,F2RL2,MTOR,SOS1,GRB2,GSK3A,PARD3,PIK3R5,TSC2,YWHAB,YWHAG,INPPL1" 1269345 LOW Platelet calcium homeostasis BioSystems: REACTOME 4.58E-05 1.41E-01 7.82E-03 6.73E-02 14 31 "ATP2A1,ATP2A2,ATP2B1,ATP2B2,ATP2B4,P2RX7,SLC8A2,SLC8A1,SLC8A3,STIM1,ITPR1,ITPR2,ITPR3,TRPC7" 138064 LOW Syndecan-4-mediated signaling events BioSystems: Pathway Interaction Database 4.58E-05 1.41E-01 7.82E-03 6.73E-02 14 31 "RHOA,PLG,PRKCA,RAC1,DNM2,CCL5,SDCBP,NUDT16L1,TFPI,TNFRSF13B,TNC,ITGB1,LAMA3,ADAM12" M18342 LOW G alpha i Pathway MSigDB C2 BIOCARTA (v6.0) 5.23E-05 1.61E-01 8.20E-03 7.06E-02 15 35 "PI3,PLCB4,DAG1,AKT3,EGFR,EPHB2,SOS1,SRC,PLCB1,GRB2,ITPKB,ITPR1,ITPR2,ITPR3,KCNJ9" P00034 LOW Integrin signalling pathway PantherDB 5.34E-05 1.64E-01 8.20E-03 7.06E-02 44 167 "ACTN2,MAP3K4,PIK3R3,ITGA8,RHOA,CDC42,PIK3CA,PIK3CD,PIK3R1,COL1A2,COL4A6,COL5A2,COL11A2,CRKL,CSK,MAP2K3,PTK2,RAC1,RAP1B,ARHGAP10,ARPC3,RRAS,ARPC1A,LIMS2,FYN,SOS1,ARHGAP26,SRC,VASP,VCL,COL27A1,MICALL1,ITGA6,ITGA1,ITGA2,ITGAD,ITGAE,ITGAM,ITGB1,ITGB2,ITGB6,LAMA3,LAMA5,LIMS1" 213818 LOW Glutamatergic synapse BioSystems: KEGG 6.27E-05 1.93E-01 9.09E-03 7.83E-02 33 114 "ADCY2,ADCY5,ADCY9,GRK3,CACNA1A,CACNA1C,PLA2G4E,DLGAP1,PLCB4,PLD1,HOMER2,PPP3CA,PPP3CB,PRKCA,PRKCB,SHANK1,SLC1A1,SLC1A2,SHANK2,GNG12,PLCB1,GNAO1,GRIA1,GRIA3,GRIK1,GRIK4,GRIN2D,GRM1,SHANK3,ITPR1,ITPR2,ITPR3,SLC17A7" 114228 LOW Fc gamma R-mediated phagocytosis BioSystems: KEGG 6.83E-05 2.10E-01 9.09E-03 7.83E-02 28 91 "PIP5K1B,PLA2G6,PIK3R3,MYO10,PLA2G4E,CDC42,PIK3CA,PIK3CD,PIK3R1,PLD1,CRKL,PRKCA,PRKCB,PRKCE,RAC1,DNM2,AKT3,ARPC3,WASF2,FCGR2A,FCGR2B,ARPC1A,VASP,VAV1,VAV2,INPPL1,MARCKSL1,LIMK1" P00019 LOW Endothelin signaling pathway PantherDB 6.90E-05 2.12E-01 9.09E-03 7.83E-02 24 73 "ADCY2,ADCY5,ADCY9,PIK3R3,SEC11C,NOS3,PIK3CA,PIK3CD,PIK3R1,PLCB4,PRKAR1A,PRKAR2A,PRKCA,PRKCB,PRKCE,PRKG1,AKT3,ECE1,EDNRA,PLCB1,PIK3R5,ITPR1,ITPR2,ITPR3" 868086 LOW Rap1 signaling pathway BioSystems: KEGG 7.14E-05 2.19E-01 9.09E-03 7.83E-02 52 210 "ADCY2,ADCY5,ADCY9,ADORA2A,SIPA1L2,ANGPT1,PIK3R3,RHOA,NGFR,LPAR2,CDC42,PIK3CA,PIK3CD,PIK3R1,PLCB4,CNR1,CRKL,SIPA1L1,PRKCA,PRKCB,MAP2K3,MAP2K6,DOCK4,RAPGEF5,RASSF5,TLN2,CALML4,RAC1,RALB,AKT3,RAP1B,LPAR1,EFNA3,EGFR,PLCE1,RRAS,MAGI3,SRC,PARD6B,PLCB1,GNAO1,PARD3,PRKD3,VASP,VAV2,ID1,IGF1R,INSR,ITGAM,ITGB1,ITGB2,KIT" 169306 LOW Pancreatic secretion BioSystems: KEGG 7.40E-05 2.27E-01 9.09E-03 7.83E-02 29 96 "ADCY2,ADCY5,ADCY9,RHOA,SLC4A4,ATP2A1,ATP2A2,ATP2B1,ATP2B2,ATP2B4,CCKAR,PLA2G5,PLCB4,CPB2,PRKCA,PRKCB,RAB27B,RAC1,RAP1B,RYR2,SLC4A2,SLC9A1,PLCB1,ATP1B4,ITPR1,ITPR2,ITPR3,KCNMA1,KCNQ1" 1268763 LOW Neuronal System BioSystems: REACTOME 7.96E-05 2.45E-01 9.40E-03 8.09E-02 78 351 "ACTN2,ADCY2,ADCY5,ADCY9,AP2A1,AP2A2,AP2B1,PPFIA2,APBA1,CACNA1A,CACNA1B,CACNA1E,CACNA2D1,KCNAB3,DLGAP1,CACNA2D2,PDPK1,KCNB2,CHRNB3,DLGAP3,NRXN3,NRXN2,HOMER2,GABBR2,SIPA1L1,PRKCA,PRKCB,PTPRS,DLG1,DLG2,SHANK1,GJC1,KCNK7,AKAP9,EPB41L1,NCALD,RRAS,KCNK9,CACNG2,DLGAP4,NLGN1,SLC1A1,SLC1A2,SLC6A11,SHANK2,SLC18A2,CACNG4,CACNA2D3,GABRA2,GABRG2,NAAA,STXBP1,GNG12,ARHGEF9,RPS6KA6,PLCB1,SYN2,GRIA1,GRIA3,GRIK1,GRIK4,GRIN2D,GRM1,KCNH3,SHANK3,KCNB1,KCNC1,KCNH2,KCNJ6,KCNJ9,KCNJ10,KCNMA1,SLC17A7,KCNN3,KCNQ1,KCNAB1,KCNQ3,KCNK17" 83052 LOW Phosphatidylinositol signaling system BioSystems: KEGG 9.10E-05 2.79E-01 1.04E-02 8.91E-02 29 97 "PIP5K1B,PIK3R3,CDS2,PIP4P1,DGKH,PIK3CA,PIK3CD,PIK3R1,PIP4K2A,PLCB4,PRKCA,PRKCB,DGKA,DGKG,CALML4,PLCE1,CDIPT,MTMR8,IP6K3,INPP5K,PLCB1,MTMR14,INPP5E,INPP4A,INPPL1,ITPKB,ITPR1,ITPR2,ITPR3" 83050 LOW Calcium signaling pathway BioSystems: KEGG 1.09E-04 3.34E-01 1.19E-02 1.03E-01 46 182 "ADCY2,ADCY9,ADORA2A,STIM2,SLC25A4,MCU,ATP2A1,ATP2A2,ATP2B1,ATP2B2,ATP2B4,MYLK,CACNA1G,NOS3,CACNA1A,CACNA1B,CACNA1C,CACNA1E,NTSR1,CCKAR,P2RX7,PDE1A,PLCB4,PPP3CA,PPP3CB,PRKCA,PRKCB,MYLK3,CALML4,EDNRA,EGFR,PLCE1,RYR2,RYR3,SLC8A2,SLC8A1,SLC8A3,STIM1,PLCB1,GRIN2D,GRM1,ORAI3,ITPKB,ITPR1,ITPR2,ITPR3" 83056 LOW Ubiquitin mediated proteolysis BioSystems: KEGG 1.17E-04 3.61E-01 1.23E-02 1.06E-01 37 137 "MAP3K1,CUL2,BIRC3,PIAS1,SOCS1,HERC3,BTRC,CBL,PRKN,CDC27,RCHY1,DDB1,UBE2R2,RHOBTB1,UBA2,SAE1,FBXW7,STUB1,UBE4B,ANAPC7,UBE2E3,UBOX5,UBE2O,UBE2D4,FBXW11,MGRN1,ELOB,WWP2,UBE2QL1,UBE2K,CBLC,UBE2G2,UBE2H,UBE2I,UBE2L3,SMURF2,UBE2J2" 138009 LOW Plasma membrane estrogen receptor signaling BioSystems: Pathway Interaction Database 1.24E-04 3.81E-01 1.23E-02 1.06E-01 12 26 "MMP2,RHOA,NOS3,PIK3CA,PIK3R1,ESR1,SOS1,SRC,STRN,PLCB1,GRB2,IGF1R" 83081 LOW B cell receptor signaling pathway BioSystems: KEGG 1.25E-04 3.85E-01 1.23E-02 1.06E-01 23 71 "PIK3AP1,PIK3R3,NFATC1,NFATC2,NFATC3,NFKBIB,CD19,CD22,CD81,PIK3CA,PIK3CD,PIK3R1,PPP3CA,PPP3CB,PRKCB,RAC1,AKT3,FCGR2B,SOS1,GRB2,VAV1,VAV2,INPPL1" 1269488 LOW Regulation of KIT signaling BioSystems: REACTOME 1.32E-04 4.07E-01 1.23E-02 1.06E-01 9 16 "SOCS1,CBL,PRKCA,SH2B3,FYN,SOS1,SRC,GRB2,KIT" 1268767 LOW Depolarization of the Presynaptic Terminal Triggers the Opening of Calcium Channels BioSystems: REACTOME 1.36E-04 4.18E-01 1.23E-02 1.06E-01 8 13 "CACNA1A,CACNA1B,CACNA1E,CACNA2D1,CACNA2D2,CACNG2,CACNG4,CACNA2D3" 1269305 LOW CLEC7A (Dectin-1) induces NFAT activation BioSystems: REACTOME 1.36E-04 4.18E-01 1.23E-02 1.06E-01 8 13 "NFATC1,NFATC2,NFATC3,PPP3CA,PPP3CB,ITPR1,ITPR2,ITPR3" 149807 LOW Bacterial invasion of epithelial cells BioSystems: KEGG 1.41E-04 4.33E-01 1.24E-02 1.07E-01 24 76 "PIK3R3,RHOA,CTNNA3,CBL,CDC42,PIK3CA,PIK3CD,PIK3R1,CLTC,CRKL,DNM3,ARHGEF26,PTK2,RAC1,DNM2,ARHGAP10,ARPC3,WASF2,ARPC1A,SHC4,SRC,CBLC,VCL,ITGB1" 1270330 LOW EPH-Ephrin signaling BioSystems: REACTOME 1.57E-04 4.81E-01 1.25E-02 1.08E-01 28 95 "AP2A1,AP2A2,AP2B1,MMP2,RHOA,MYH10,MYH11,PAK2,CDC42,CLTC,PTK2,RAC1,ARPC3,ACTR2,EFNA3,MYH14,ROCK1,EPHB1,EPHB2,SDCBP,ARPC1A,SHB,FYN,EPHA6,SRC,ARHGEF28,VAV2,LIMK1" 83094 LOW Type II diabetes mellitus BioSystems: KEGG 1.57E-04 4.81E-01 1.25E-02 1.08E-01 17 46 "PIK3R3,SOCS1,CACNA1G,CACNA1A,CACNA1B,CACNA1C,CACNA1E,PIK3CA,PIK3CD,PIK3R1,PRKCE,MTOR,GCK,TNF,HK2,INSR,SOCS4" 137930 LOW Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) BioSystems: Pathway Interaction Database 1.59E-04 4.88E-01 1.25E-02 1.08E-01 23 72 "MAP3K1,RPTOR,RANBP10,RHOA,BAD,CBL,PAK2,CDC42,PDPK1,PIK3CA,PIK3R1,CRKL,ARHGEF4,RAC1,RANBP9,EPS15,PAK4,F2RL2,MTOR,SOS1,SRC,GRB2,INPPL1" 117293 LOW Arrhythmogenic right ventricular cardiomyopathy (ARVC) BioSystems: KEGG 1.59E-04 4.88E-01 1.25E-02 1.08E-01 23 72 "ACTN2,ITGA8,CTNNA3,ATP2A2,CACNA1C,CACNA2D1,CACNA2D2,TCF7L1,DAG1,DES,CACNG7,RYR2,CACNG2,SGCB,SGCD,SLC8A1,CACNG4,CACNA2D3,ITGA6,ITGA1,ITGA2,ITGB1,ITGB6" 83065 LOW Axon guidance BioSystems: KEGG 1.72E-04 5.29E-01 1.32E-02 1.14E-01 44 175 "ABL1,SEMA7A,PIK3R3,RHOA,NFATC2,NFATC3,NFATC4,SEMA5A,PAK2,CDC42,PDK1,PIK3CA,PIK3CD,PIK3R1,NTN1,PLXNA1,RHOD,PPP3CA,PPP3CB,PRKCA,PTK2,SSH3,RAC1,DPYSL2,RGS3,EFNA3,ROCK1,EPHB1,EPHB2,PAK4,RRAS,NTNG1,SLIT1,FYN,EPHA6,SRC,PARD6B,SRGAP2,PARD3,TRPC5,SSH2,ITGB1,ABLIM1,LIMK1" M3270 LOW Integrin Signaling Pathway MSigDB C2 BIOCARTA (v6.0) 1.93E-04 5.93E-01 1.45E-02 1.25E-01 25 82 "ABL1,ITGA8,MYLK,PAK2,CDC42,PIK3CA,ARHGEF6,PTK2,TLN2,AKT3,ACTR2,ROCK1,EPHB2,PAK4,FYN,SOS1,ARHGAP26,SRC,MAPK8IP3,GRB2,ARHGAP35,VASP,ITGA6,ITGA1,ITGA2" M19784 LOW T Cell Receptor Signaling Pathway MSigDB C2 BIOCARTA (v6.0) 2.12E-04 6.52E-01 1.48E-02 1.28E-01 17 47 "MAP3K1,NFATC1,NFATC2,NFATC3,NFATC4,CD247,PIK3CA,PIK3R1,PPP3CA,PPP3CB,PRKCA,PRKCB,RAC1,FYN,SOS1,GRB2,VAV1" 1269380 LOW Signaling by EGFR BioSystems: REACTOME 2.15E-04 6.59E-01 1.48E-02 1.28E-01 79 367 "PIK3AP1,MARK3,ACTN2,ADCY2,ADCY5,ADCY9,PIP5K1B,FOXO4,ANGPT1,PIK3R3,ARRB1,BAD,NF1,KSR2,CBL,CD19,CDC42,PAQR3,PDE1A,PDPK1,EPS15L1,PIK3CA,PIK3CD,PIK3R1,PIP4K2A,PSMF1,PPP2R1A,PPP2R5C,PPP2R5E,CSK,PRKAR1A,PRKAR2A,PRKCA,PRKCE,DAB2IP,PSMB2,PSMB7,PSMC6,PSMD3,PSMD4,PTK2,PSMD6,PTPRA,PTPRK,AKT3,RAP1B,RANBP9,AKAP9,EGFR,EPS15,CNKSR1,FGB,FGG,FOXO1,MTOR,FYN,SOS1,AGO2,SPTAN1,SRC,FRS2,TNRC6A,GRB2,GRIN2D,GSK3A,TSC2,VAV1,VCL,VWF,YWHAB,IL2RG,INSR,ITPR1,ITPR2,ITPR3,JAK1,KIT,RASGEF1A,ADAM12" 989139 LOW AMPK signaling pathway BioSystems: KEGG 2.20E-04 6.75E-01 1.48E-02 1.28E-01 33 121 "ACACA,RPTOR,PIK3R3,CCNA2,PDPK1,PIK3CA,PIK3CD,PIK3R1,PPARG,CPT1A,CPT1B,CREB5,PPP2R1A,PPP2R3A,PPP2R5C,PPP2R5E,PRKAB1,ADIPOR2,AKT3,STRADB,FASN,PRKAG2,FOXO1,MTOR,G6PC,PPARGC1A,MLYCD,TSC2,HMGCR,HNF4A,CPT1C,IGF1R,INSR" 137932 LOW IL6-mediated signaling events BioSystems: Pathway Interaction Database 2.22E-04 6.82E-01 1.48E-02 1.28E-01 16 43 "MCL1,MITF,PIAS1,PIK3CA,PIK3R1,MAP2K6,RAC1,FGG,FOXO1,SOS1,GRB2,HSP90B1,VAV1,IL6R,IRF1,JAK1" M1908 LOW Fc Epsilon Receptor I Signaling in Mast Cells MSigDB C2 BIOCARTA (v6.0) 2.27E-04 6.97E-01 1.48E-02 1.28E-01 15 39 "MAP3K1,NFATC1,NFATC2,NFATC3,NFATC4,PAK2,PIK3CA,PIK3R1,PPP3CA,PPP3CB,PRKCB,FCER1G,SOS1,GRB2,VAV1" 1017634 LOW cAMP signaling pathway BioSystems: KEGG 2.28E-04 7.02E-01 1.48E-02 1.28E-01 48 198 "ACOX1,ADCY2,ADCY5,ADCY9,ADORA2A,PIK3R3,RHOA,ATP2A2,ATP2B1,ATP2B2,ATP2B4,BAD,NFATC1,NPY,CACNA1C,NPR1,PDE3B,PIK3CA,PIK3CD,PIK3R1,PLD1,FXYD1,CNGB1,PPARA,GABBR2,CREBBP,CREB5,CNGB3,CALML4,RAC1,AKT3,RAP1B,EDNRA,ROCK1,EP300,PLCE1,RRAS,RYR2,RRAS2,SLC9A1,GLI1,GLI3,GRIA1,GRIA3,GRIN2D,ATP1B4,VAV1,VAV2" 1269340 LOW Hemostasis BioSystems: REACTOME 2.32E-04 7.11E-01 1.48E-02 1.28E-01 126 640 "ABL1,CD109,ACTN2,ANGPT1,PIK3R3,APOB,RHOA,ARRB1,ATP2A1,ATP2A2,ATP2B1,ATP2B2,ATP2B4,NOS3,DAGLB,CD9,P2RX7,CDC42,CDK2,PDE1A,PDE2A,PDE3B,PDE9A,PDPK1,PECAM1,DGKH,PIK3CA,PIK3CD,PIK3R1,PLG,SERPINF2,CREBBP,KIF20B,SH2B1,PPP2R1A,PPP2R5C,PPP2R5E,CSK,PRKAR1A,PRKAR2A,PRKCA,PRKCB,PRKCE,PRKG1,CTSW,DOCK4,PHACTR2,DGKA,DGKG,TOR4A,NHLRC2,PTK2,RAB27B,RAC1,RAD51B,DOCK3,AKT3,RAP1B,SH2B3,SCCPDH,EP300,F2RL2,F13A1,FCER1G,FGB,FGG,SDC1,CAP1,KIF27,PROCR,CARMIL1,KIF16B,DOCK10,SLC3A2,KIFAP3,SLC8A2,SLC8A1,SLC8A3,FYN,KDM1A,SOS1,SRC,PDE10A,STIM1,RCOR1,GNG12,GLG1,KIF13B,GRB2,GRB14,KIF3A,TFPI,TGFB3,SLC7A8,THBD,CBX5,PIK3R5,SLC16A8,VPS45,MGLL,VAV1,VAV2,VCL,VWF,KIF18B,IL2RG,ITGA6,IRF1,IRF2,ITGA1,ITGA2,ITGAM,ITGB1,ITGB2,ITPR1,LRP8,ITPR2,ITPR3,JAK1,KCNMA1,KIFC1,KIF22,TRPC7,DOCK8,JMJD1C,AKAP1" 114229 LOW Hypertrophic cardiomyopathy (HCM) BioSystems: KEGG 2.38E-04 7.32E-01 1.49E-02 1.29E-01 25 83 "ITGA8,ATP2A2,MYH6,CACNA1C,CACNA2D1,CACNA2D2,PRKAB1,DAG1,DES,CACNG7,RYR2,CACNG2,PRKAG2,SGCB,SGCD,SLC8A1,CACNG4,CACNA2D3,TGFB3,TNF,ITGA6,ITGA1,ITGA2,ITGB1,ITGB6" 1270303 LOW Axon guidance BioSystems: REACTOME 2.72E-04 8.35E-01 1.63E-02 1.41E-01 111 554 "ABL1,MARK3,ACTN2,AP2A1,AP2A2,AP2B1,MMP2,ANGPT1,ANK3,SEMA7A,PIK3R3,RHOA,ARRB1,MYH10,MYH11,MYO10,NEO1,NF1,CACNA1G,CACNA1C,KSR2,SEMA5A,PAK2,CDC42,PAQR3,PIK3CA,PIK3CD,PIK3R1,PITPNA,CLTC,NTN1,PLXNA1,PSMF1,PPP2R1A,PPP2R5C,PPP2R5E,CSK,CSNK2A1,NCAN,DNM3,PRKCA,DAB2IP,PSMB2,PSMB7,PSMC6,PSMD3,PSMD4,PTK2,PSMD6,PTPRA,DLG1,RAC1,DNM2,DOK1,DPYSL2,RAP1B,RANBP9,ARPC3,ACTR2,EFNA3,AKAP9,EGFR,MYH14,ROCK1,EPHB1,EPHB2,CNKSR1,PAK4,RRAS,FGB,FGG,SDCBP,CAP1,ARPC1A,SHB,SLIT1,FYN,SCN3B,SOS1,CHL1,EPHA6,SPTAN1,SRC,FRS2,NFASC,RPS6KA6,ARHGEF28,GRB2,GRB10,SRGAP2,GRIN2D,ARHGAP35,DOK6,TRPC5,VASP,VAV2,VCL,VWF,YWHAB,SHANK3,IL2RG,ITGA1,ITGA2,ITGB1,JAK1,KCNQ3,KIT,TRPC7,RASGEF1A,ABLIM1,LIMK1" M10994 LOW Activation of Src by Protein-tyrosine phosphatase alpha MSigDB C2 BIOCARTA (v6.0) 2.77E-04 8.49E-01 1.63E-02 1.41E-01 7 11 "CDC25B,CSK,PRKCA,PRKCB,PTPRA,SRC,GRB2" 1269347 LOW Reduction of cytosolic Ca++ levels BioSystems: REACTOME 2.77E-04 8.50E-01 1.63E-02 1.41E-01 8 14 "ATP2A1,ATP2A2,ATP2B1,ATP2B2,ATP2B4,SLC8A2,SLC8A1,SLC8A3" 1492886 LOW Apelin signaling pathway BioSystems: KEGG 3.03E-04 9.31E-01 1.75E-02 1.51E-01 36 138 "ACTA2,ADCY2,MEF2A,ADCY5,ADCY9,MYLK,NOS3,MEF2B,NRF1,PDE3B,PLCB4,PRKAB1,PRKCE,HDAC4,MYLK3,CALML4,AKT3,RRAS,RYR2,RYR3,PRKAG2,RRAS2,SLC8A2,SLC8A1,SLC8A3,SLC9A1,MTOR,PPARGC1A,GNG12,PLCB1,PIK3R5,GABARAPL1,ITPR1,ITPR2,ITPR3,SMAD3" M3501 LOW B Cell Antigen Receptor MSigDB C2 BIOCARTA (v6.0) 3.14E-04 9.65E-01 1.75E-02 1.51E-01 15 40 "BAD,NFKBIB,CD19,PI3,PIK3CA,PIK3CD,PIK3R1,CSK,DAG1,AKT3,EPHB2,SOS1,GRB2,VAV1,ITPKB" 169350 LOW Signaling events mediated by TCPTP BioSystems: Pathway Interaction Database 3.19E-04 9.81E-01 1.75E-02 1.51E-01 14 36 "PIAS1,ATR,PIK3CA,PIK3R1,CREBBP,EIF2AK2,EGFR,SOS1,SRC,GRB2,INSR,ITGA1,ITGB1,JAK1" 102279 LOW Endocytosis BioSystems: KEGG 3.19E-04 9.81E-01 1.75E-02 1.51E-01 59 260 "GRK3,AP2A1,AP2A2,AP2B1,PIP5K1B,RHOA,ARRB1,GBF1,NTRK1,CBL,USP8,RABEP1,CDC42,EPS15L1,ZFYVE9,CLTC,PLD1,DNM3,RAB11FIP3,DAB2,GIT2,DNAJC6,CHMP7,ARFGAP3,RAB5B,DNM2,WASHC3,ARPC3,EGFR,EPS15,EHD4,ACAP3,ARAP1,AGAP3,PSD2,FOLR1,ARPC1A,RAB11FIP1,EPN2,RAB11FIP4,SNX1,SRC,PARD6B,RAB31,GRK5,PSD3,TGFB3,PARD3,VPS45,CBLC,PIP5KL1,SMURF2,SMAP1,WIPF1,IGF1R,IL2RG,SH3GLB2,KIT,SMAD3" M15926 LOW Trefoil Factors Initiate Mucosal Healing MSigDB C2 BIOCARTA (v6.0) 3.36E-04 1.00E+00 1.81E-02 1.56E-01 10 21 "RHOA,BAD,PIK3CA,PIK3R1,PTK2,EGFR,SOS1,GHR,GRB2,ITGB1" 1269507 LOW Signaling by Rho GTPases BioSystems: REACTOME 3.61E-04 1.00E+00 1.91E-02 1.64E-01 89 430 "ABL1,ABR,FMNL2,MEN1,MAD1L1,TAOK1,ARHGAP20,PREX1,FGD2,ARHGAP23,AR,RHOA,ARHGAP42,MYH10,MYH11,MYLK,MYO9A,NCF4,PRC1,OPHN1,PAFAH1B1,PAK2,CDC42,CENPF,PDPK1,CHN2,NOXO1,ARHGEF6,RHOD,AHCTF1,NSL1,PPP2R1A,PPP2R5C,PPP2R5E,PKN2,ARHGEF4,DEPDC7,ARHGEF26,ARHGAP32,ARHGEF38,PTK2,RHOBTB1,ARHGAP44,RAC1,ZWILCH,RANBP2,ARHGAP10,ARPC3,ACTR2,MYH14,WASF2,ROCK1,NET1,OBSCN,GMIP,DLC1,SYDE2,ARAP1,CENPT,ARPC1A,ARHGEF15,KDM1A,SOS1,CENPN,IQGAP2,ARHGAP26,SRC,GDI2,FGD4,ARHGEF9,NUP160,GRB2,SRGAP2,ARHGAP35,CIT,HIST1H2BB,SKA1,VAV1,VAV2,WIPF1,YWHAB,YWHAG,RHPN2,INCENP,ITGB1,KTN1,RHOT2,LIMK1,ARHGAP12" 121494 LOW Dilated cardiomyopathy BioSystems: KEGG 3.76E-04 1.00E+00 1.96E-02 1.68E-01 26 90 "ADCY2,ADCY5,ADCY9,ITGA8,ATP2A2,MYH6,CACNA1C,CACNA2D1,CACNA2D2,DAG1,DES,CACNG7,RYR2,CACNG2,SGCB,SGCD,SLC8A1,CACNG4,CACNA2D3,TGFB3,TNF,ITGA6,ITGA1,ITGA2,ITGB1,ITGB6" 1269279 LOW Fcgamma receptor (FCGR) dependent phagocytosis BioSystems: REACTOME 3.90E-04 1.00E+00 2.00E-02 1.72E-01 27 95 "ABL1,PLA2G6,MYO5A,MYO10,CD247,CDC42,PIK3CA,PIK3R1,PLD1,PRKCE,PTK2,RAC1,ARPC3,ACTR2,WASF2,FCGR2A,ARPC1A,FYN,SRC,GRB2,VAV1,VAV2,WIPF1,ITPR1,ITPR2,ITPR3,LIMK1" M2404 LOW Mechanism of Gene Regulation by Peroxisome Proliferators via PPARa(alpha) MSigDB C2 BIOCARTA (v6.0) 4.04E-04 1.00E+00 2.03E-02 1.75E-01 19 58 "ACOX1,ME1,APOA2,NCOA1,PIK3CA,PIK3R1,PPARA,CPT1B,CREBBP,NCOR1,PRKAR1A,PRKAR2A,PRKCA,PRKCB,RB1,EHHADH,EP300,PPARGC1A,TNF" 1269324 LOW Regulation of signaling by CBL BioSystems: REACTOME 4.26E-04 1.00E+00 2.11E-02 1.82E-01 9 18 "PIK3R3,CBL,PIK3CA,PIK3CD,PIK3R1,CRKL,FYN,GRB2,VAV1" 1269877 LOW Membrane Trafficking BioSystems: REACTOME 4.38E-04 1.00E+00 2.13E-02 1.84E-01 120 614 "GRK3,AP2A1,AP2A2,AP2B1,AP1G1,COG6,PLA2G6,RIC1,ANK3,MYH7B,APOB,DENND1A,ARCN1,ARRB1,MYH6,GBF1,MYO5A,SNAP23,BICD1,CBL,RABEP1,SH3D19,PAFAH1B1,PAFAH1B2,ALS2CL,TRIP11,EPS15L1,AP3S1,CLTC,PACSIN1,KIF20B,SEC24C,PRKAB1,DNM3,RAB39A,CUX1,GAPVD1,DAB2,COG3,DNAJC6,TBC1D8B,CNIH3,CHMP7,ARFGAP3,SEC16A,RAB5B,RAB27A,TRAPPC9,DYNC1H1,RAB27B,DYNC1I1,DYNC1I2,DYNC1LI2,RAC1,DNM2,AKT3,GJC1,ARPC3,ACTR2,EGFR,STX6,PPP6R3,RABEPK,EPS15,RIN3,TBC1D2,PRKAG2,COG5,KIF27,FOLR1,ARPC1A,KIF16B,AAK1,COPG2,SEC22A,DENND4C,EPN2,KIFAP3,NBAS,NECAP2,EXOC2,FNBP1,DENND2A,SPTAN1,SRC,GDI2,MAN1A2,STX5,SYT11,RAB30,KDELR1,COPS6,GOLGA1,GOLGA2,GOLGA4,KDELR2,KDELR3,KIF13B,RAB31,GRB2,GRIA1,KIF3A,DCTN3,EXOC4,VPS45,TRAPPC5,TSC2,YWHAB,YWHAG,DENND2C,KIF18B,RINL,HPS4,MAP1LC3B,KIFC1,KIF22,MAN1C1,VTI1A,RALGAPA2,SBF2" 1269178 LOW CD28 co-stimulation BioSystems: REACTOME 4.49E-04 1.00E+00 2.15E-02 1.85E-01 13 33 "PIK3R3,PAK2,CDC42,PDPK1,PIK3CA,PIK3R1,RAC1,AKT3,MTOR,FYN,SRC,GRB2,VAV1" 1311074 LOW Phospholipase D signaling pathway BioSystems: KEGG 4.64E-04 1.00E+00 2.19E-02 1.89E-01 37 146 "ADCY2,ADCY5,ADCY9,PIP5K1B,PIK3R3,RHOA,PLA2G4E,LPAR2,DGKH,PIK3CA,PIK3CD,PIK3R1,PLCB4,PLD1,DNM3,PRKCA,DGKA,DGKG,DNM2,RALB,AKT3,LPAR1,EGFR,RRAS,FCER1G,RRAS2,SHC4,MTOR,FYN,SOS1,PLCB1,GRB2,GRM1,PIK3R5,TSC2,INSR,KIT" PW:0000315 LOW calcineurin signaling Pathway Ontology 5.56E-04 1.00E+00 2.59E-02 2.23E-01 6 9 "NFATC2,NFATC3,NFATC4,PPP3CA,PPP3CB,RCAN1" M1940 LOW Regulation And Function Of ChREBP in Liver MSigDB C2 BIOCARTA (v6.0) 5.78E-04 1.00E+00 2.62E-02 2.25E-01 15 42 "ACACA,PPP2R1A,PPP2R3A,PTPA,PPP2R5C,PPP2R5E,PRKAB1,PRKAR1A,PRKAR2A,FASN,PRKAG2,GCK,MLX,YWHAB,YWHAG" M9134 LOW Trka Receptor Signaling Pathway MSigDB C2 BIOCARTA (v6.0) 5.80E-04 1.00E+00 2.62E-02 2.25E-01 7 12 "NTRK1,PIK3CA,PIK3R1,PRKCA,PRKCB,SOS1,GRB2" 169349 LOW Validated transcriptional targets of AP1 family members Fra1 and Fra2 BioSystems: Pathway Interaction Database 6.30E-04 1.00E+00 2.74E-02 2.36E-01 13 34 "MMP2,NFATC1,NFATC2,NFATC3,NOS3,CCNA2,COL1A2,DMTF1,EP300,THBD,USF2,LAMA3,FOSL1" M7955 LOW Genes related to the insulin receptor pathway MSigDB C2 BIOCARTA (v6.0) 6.40E-04 1.00E+00 2.74E-02 2.36E-01 17 51 "CBL,CDC42,PDPK1,PIK3CA,PIK3CD,PIK3R1,AKT3,F2RL2,CAP1,FOXO1,SOS1,GRB2,GSK3A,PARD3,YWHAB,YWHAG,INPPL1" 83089 LOW Regulation of actin cytoskeleton BioSystems: KEGG 6.42E-04 1.00E+00 2.74E-02 2.36E-01 49 212 "PIP5K1B,PIK3R3,ITGA8,RHOA,MYH10,MYLK,PAK2,CDC42,PIK3CA,PIK3CD,PIK3R1,PIP4K2A,MYLPF,ARHGEF6,CRKL,ARHGEF4,PTK2,MYLK3,SSH3,RAC1,ARPC3,EGFR,MYH14,WASF2,ROCK1,PAK4,RRAS,RRAS2,ARPC1A,SLC9A1,SOS1,IQGAP2,SRC,GNG12,ARHGAP35,VAV1,VAV2,VCL,SSH2,ITGA6,ITGA1,ITGA2,ITGAD,ITGAE,ITGAM,ITGB1,ITGB2,ITGB6,LIMK1" 83090 LOW Insulin signaling pathway BioSystems: KEGG 6.42E-04 1.00E+00 2.74E-02 2.36E-01 35 138 "ACACA,RPTOR,PIK3R3,SOCS1,BAD,CBL,PDE3B,PDPK1,PIK3CA,PIK3CD,PIK3R1,CRKL,PRKAB1,PRKAR1A,PRKAR2A,PYGL,CALML4,AKT3,FASN,PRKAG2,FOXO1,SHC4,MTOR,G6PC,SOS1,INPP5K,GCK,PPARGC1A,GRB2,HK2,CBLC,TSC2,INPPL1,INSR,SOCS4" 1383038 LOW Intra-Golgi and retrograde Golgi-to-ER traffic BioSystems: REACTOME 6.55E-04 1.00E+00 2.76E-02 2.37E-01 43 180 "COG6,PLA2G6,RIC1,ARCN1,GBF1,BICD1,PAFAH1B1,PAFAH1B2,TRIP11,KIF20B,RAB39A,CUX1,COG3,ARFGAP3,DYNC1H1,DYNC1I1,DYNC1I2,DYNC1LI2,STX6,RABEPK,COG5,KIF27,KIF16B,COPG2,KIFAP3,NBAS,MAN1A2,STX5,RAB30,KDELR1,GOLGA1,GOLGA4,KDELR2,KDELR3,KIF13B,KIF3A,DCTN3,VPS45,KIF18B,KIFC1,KIF22,MAN1C1,VTI1A" 1144996 LOW Glucagon signaling pathway BioSystems: KEGG 6.75E-04 1.00E+00 2.78E-02 2.39E-01 28 103 "ACACA,ADCY2,PDE3B,PGAM1,PLCB4,PPARA,CPT1A,CPT1B,CREBBP,CREB5,PPP3CA,PPP4C,PPP3CB,PRKAB1,PYGL,CALML4,AKT3,EP300,PRKAG2,FOXO1,G6PC,GCK,PPARGC1A,PLCB1,CPT1C,ITPR1,ITPR2,ITPR3" 1144995 LOW Sphingolipid signaling pathway BioSystems: KEGG 6.78E-04 1.00E+00 2.78E-02 2.39E-01 31 118 "NSMAF,PIK3R3,RHOA,S1PR4,TRADD,NOS3,PDPK1,S1PR2,SGMS1,PIK3CA,PIK3CD,PIK3R1,PLCB4,PLD1,CERS2,PPP2R1A,PPP2R3A,PPP2R5C,PPP2R5E,PRKCA,PRKCB,PRKCE,RAC1,AKT3,ROCK1,FCER1G,FYN,PLCB1,TNF,CERS3,CERS6" 138002 LOW E-cadherin signaling in keratinocytes BioSystems: Pathway Interaction Database 7.04E-04 1.00E+00 2.82E-02 2.42E-01 9 19 "RHOA,CASR,PIK3CA,PIK3R1,RAC1,EGFR,FYN,SRC,VASP" 213307 LOW Endocrine and other factor-regulated calcium reabsorption BioSystems: KEGG 7.06E-04 1.00E+00 2.82E-02 2.42E-01 16 47 "ADCY9,AP2A1,AP2A2,AP2B1,ATP2B1,CALB1,CLTC,PLCB4,DNM3,PRKCA,PRKCB,DNM2,ESR1,SLC8A1,PLCB1,ATP1B4" 83107 LOW Renal cell carcinoma BioSystems: KEGG 7.17E-04 1.00E+00 2.82E-02 2.43E-01 20 65 "CUL2,PIK3R3,FLCN,PAK2,CDC42,PIK3CA,PIK3CD,PIK3R1,CREBBP,CRKL,RAC1,EGLN2,AKT3,RAP1B,EP300,PAK4,SOS1,ELOB,GRB2,TGFB3" 1270350 LOW DNA Repair BioSystems: REACTOME 7.58E-04 1.00E+00 2.94E-02 2.53E-01 68 319 "ABL1,HIST3H3,MGMT,MNAT1,PARG,APEX1,PIAS1,BABAM1,RUVBL1,GEN1,ATR,EME2,NTHL1,BAZ1B,CCNA2,CDK2,INO80E,RCHY1,POLE,POLR2G,POLR2I,RAD9B,INO80,PPP4C,MDC1,AQR,RNF111,PCLAF,DDB1,INO80D,DNA2,RAD23B,RAD51,RAD51B,PARP2,ASCC1,USP43,RIF1,RNF4,NHEJ1,EP300,ERCC2,ERCC6,ACTR5,FANCA,FANCD2,FANCB,POLK,REV1,DTL,SIRT6,FAAP100,SUMO3,CLSPN,POLQ,COPS6,POLM,GTF2H2,CHEK2,HIST1H2BB,TOP3A,TP53BP1,UBE2I,XRCC1,XRCC4,USP7,SLX1A,LIG1" 1269284 LOW DAP12 signaling BioSystems: REACTOME 7.70E-04 1.00E+00 2.94E-02 2.53E-01 75 359 "PIK3AP1,MARK3,ACTN2,ADCY2,ADCY5,ADCY9,PIP5K1B,FOXO4,ANGPT1,PIK3R3,ARRB1,BAD,NF1,KSR2,CD19,PAQR3,PDE1A,PDPK1,PIK3CA,PIK3CD,PIK3R1,PIP4K2A,PSMF1,PPP2R1A,PPP2R5C,PPP2R5E,CSK,PRKAR1A,PRKAR2A,PRKCA,PRKCE,DAB2IP,PSMB2,PSMB7,PSMC6,PSMD3,PSMD4,PTK2,PSMD6,PTPRA,RAC1,AKT3,RAP1B,RANBP9,AKAP9,EGFR,CNKSR1,FGB,FGG,FOXO1,MTOR,FYN,SOS1,AGO2,SPTAN1,SRC,FRS2,TNRC6A,GRB2,GRIN2D,GSK3A,TSC2,VAV1,VAV2,VCL,VWF,YWHAB,IL2RG,INSR,ITPR1,ITPR2,ITPR3,JAK1,KIT,RASGEF1A" 137994 LOW CDC42 signaling events BioSystems: Pathway Interaction Database 7.74E-04 1.00E+00 2.94E-02 2.53E-01 21 70 "MAP3K1,CBL,PAK2,CDC42,PIK3CA,PIK3R1,PLD1,ARHGEF6,PRKCE,MAP2K3,MAP2K6,DLG1,RAC1,ARPC3,ACTR2,PAK4,F2RL2,MTOR,SRC,VAV2,LIMK1" 1427851 LOW VLDL interactions BioSystems: REACTOME 8.23E-04 1.00E+00 3.04E-02 2.62E-01 10 23 "AP2A1,AP2A2,AP2B1,APOB,APOC4,CLTC,RELN,LSR,FYN,NR1H2" M9494 LOW BCR Signaling Pathway MSigDB C2 BIOCARTA (v6.0) 8.69E-04 1.00E+00 3.04E-02 2.62E-01 13 35 "MAP3K1,NFATC1,NFATC2,NFATC3,NFATC4,PPP3CA,PPP3CB,PRKCA,PRKCB,RAC1,SOS1,GRB2,VAV1" M1718 LOW Genes related to IL4 rceptor signaling in B lymphocytes MSigDB C2 BIOCARTA (v6.0) 8.81E-04 1.00E+00 3.04E-02 2.62E-01 11 27 "SOCS1,BAD,PDPK1,PIK3CA,PIK3CD,PIK3R1,AKT3,SOS1,GRB2,GSK3A,JAK1" PW:0000143 LOW insulin signaling Pathway Ontology 8.81E-04 1.00E+00 3.04E-02 2.62E-01 11 27 "SOCS1,PDPK1,PIK3R1,PRKCA,PRKCB,SOS1,SRC,GRB2,GRB10,GRB14,INSR" 1269479 LOW Downstream signal transduction BioSystems: REACTOME 8.88E-04 1.00E+00 3.04E-02 2.62E-01 74 355 "PIK3AP1,MARK3,ACTN2,ADCY2,ADCY5,ADCY9,PIP5K1B,FOXO4,ANGPT1,PIK3R3,ARRB1,BAD,NF1,KSR2,CD19,PAQR3,PDE1A,PDPK1,PIK3CA,PIK3CD,PIK3R1,PIP4K2A,PSMF1,CRKL,PPP2R1A,PPP2R5C,PPP2R5E,CSK,PRKAR1A,PRKAR2A,PRKCA,PRKCE,DAB2IP,PSMB2,PSMB7,PSMC6,PSMD3,PSMD4,PTK2,PSMD6,PTPRA,AKT3,RAP1B,RANBP9,AKAP9,EGFR,CNKSR1,FGB,FGG,FOXO1,MTOR,FYN,SOS1,AGO2,SPTAN1,SRC,FRS2,TNRC6A,GRB2,GRIN2D,GSK3A,TSC2,VAV1,VCL,VWF,YWHAB,IL2RG,INSR,ITPR1,ITPR2,ITPR3,JAK1,KIT,RASGEF1A" 137997 LOW Signaling events mediated by HDAC Class I BioSystems: Pathway Interaction Database 8.89E-04 1.00E+00 3.04E-02 2.62E-01 20 66 "MAX,MBD3,SAP30,BTRC,CHD3,PPARG,CREBBP,NCOR1,HDAC4,GATAD2A,RANBP2,RBBP4,EP300,HDAC11,SIRT6,SIRT2,HDAC8,TFCP2,TNF,UBE2I" 547492 LOW superpathway of inositol phosphate compounds BioSystems: BIOCYC 8.89E-04 1.00E+00 3.04E-02 2.62E-01 20 66 "PIP5K1B,PIK3R3,PIP4P1,PIK3CA,PIK3CD,PIK3R1,PIP4K2A,MINPP1,FIG4,PLCE1,CDIPT,SACM1L,PLCH1,IP6K3,INPP5K,MTMR14,PIK3R5,PIP5KL1,INPPL1,ITPKB" 1383083 LOW Regulation of TP53 Activity through Acetylation BioSystems: REACTOME 8.92E-04 1.00E+00 3.04E-02 2.62E-01 12 31 "MBD3,BRD7,PIP4P1,CHD3,PIP4K2A,MAP2K6,GATAD2A,AKT3,RBBP4,EP300,BRPF1,KAT6A" M5291 LOW Role of PI3K subunit p85 in regulation of Actin Organization and Cell Migration MSigDB C2 BIOCARTA (v6.0) 9.01E-04 1.00E+00 3.04E-02 2.62E-01 8 16 "RHOA,CDC42,PIK3CA,PIK3R1,RAC1,ARPC3,ACTR2,ARPC1A" 1269360 LOW GRB2:SOS provides linkage to MAPK signaling for Integrins BioSystems: REACTOME 9.01E-04 1.00E+00 3.04E-02 2.62E-01 8 16 "PTK2,RAP1B,FGB,FGG,SOS1,SRC,GRB2,VWF" 1269184 LOW Antigen activates B Cell Receptor (BCR) leading to generation of second messengers BioSystems: REACTOME 1.01E-03 1.00E+00 3.37E-02 2.90E-01 15 44 "PIK3AP1,BLK,CBL,CD19,CD22,PIK3CD,PIK3R1,FYN,SOS1,STIM1,GRB2,VAV1,ITPR1,ITPR2,ITPR3" M16973 LOW CBL mediated ligand-induced downregulation of EGF receptors MSigDB C2 BIOCARTA (v6.0) 1.10E-03 1.00E+00 3.56E-02 3.07E-01 7 13 "CBL,PRKCA,PRKCB,EGFR,SRC,GRB2,SH3GLB2" 138040 LOW IFN-gamma pathway BioSystems: Pathway Interaction Database 1.10E-03 1.00E+00 3.56E-02 3.07E-01 14 40 "MAP3K1,PIAS1,SOCS1,CBL,PIK3CA,PIK3R1,CREBBP,CRKL,DAPK1,EP300,PTGES2,MTOR,IRF1,JAK1" 537443 LOW Retrograde endocannabinoid signaling BioSystems: KEGG 1.10E-03 1.00E+00 3.56E-02 3.07E-01 27 101 "ADCY2,ADCY5,ADCY9,DAGLB,CACNA1A,CACNA1B,CACNA1C,NAPEPLD,PLCB4,CNR1,PRKCA,PRKCB,GABRA2,GABRG2,GNG12,PLCB1,GNAO1,GRIA1,GRIA3,GRM1,MGLL,ITPR1,ITPR2,ITPR3,KCNJ6,KCNJ9,SLC17A7" 1269298 LOW Fc epsilon receptor (FCERI) signaling BioSystems: REACTOME 1.13E-03 1.00E+00 3.61E-02 3.11E-01 78 381 "PIK3AP1,MARK3,ACTN2,MAP3K1,PIP5K1B,FOXO4,ANGPT1,PIK3R3,ARRB1,BAD,NF1,NFATC1,NFATC2,NFATC3,BTRC,KSR2,CD19,PAK2,PAQR3,PDPK1,PIK3CA,PIK3CD,PIK3R1,PIP4K2A,PSMF1,PPP2R1A,PPP2R5C,PPP2R5E,PPP3CA,PPP3CB,CSK,DAB2IP,PSMB2,PSMB7,PSMC6,PSMD3,PSMD4,PTK2,PSMD6,PTPRA,RAC1,AKT3,RAP1B,RANBP9,AKAP9,EGFR,CNKSR1,FCER1G,FGB,FGG,FOXO1,MTOR,FYN,SOS1,AGO2,SPTAN1,SRC,FRS2,TNRC6A,FBXW11,GRB2,GRIN2D,GSK3A,TSC2,VAV1,VAV2,VCL,VWF,LAT2,YWHAB,IL2RG,INSR,ITPR1,ITPR2,ITPR3,JAK1,KIT,RASGEF1A" P00010 LOW B cell activation PantherDB 1.16E-03 1.00E+00 3.69E-02 3.17E-01 18 58 "NFATC1,NFATC2,NFATC3,NFATC4,CD19,CD22,PIK3CA,PIK3CD,PPP3CA,PPP3CB,PRKCB,RAC1,SOS1,VAV1,VAV2,ITPR1,ITPR2,ITPR3" M6220 LOW Agrin in Postsynaptic Differentiation MSigDB C2 BIOCARTA (v6.0) 1.18E-03 1.00E+00 3.70E-02 3.18E-01 13 36 "PAK2,CDC42,DAG1,GIT2,PTK2,RAC1,EGFR,PAK4,SRC,UTRN,ITGA1,ITGB1,LAMA3" M3008 LOW Genes encoding structural ECM glycoproteins MSigDB C2 BIOCARTA (v6.0) 1.21E-03 1.00E+00 3.73E-02 3.21E-01 45 196 "MFAP2,AMBN,NID1,VIT,NTN1,TSKU,SNED1,RELN,CRISPLD2,HMCN1,ELN,HMCN2,FGB,FGG,NID2,FRAS1,FBLN5,NTNG1,SLIT1,EGFLAM,FBN3,TINAG,FBLN7,VWA7,TGFBI,RSPO3,THBS4,TNFAIP6,TNR,TNXB,USH2A,VWF,TNC,LGI4,IGFBP2,IGFBP4,IGFBP6,INTS14,PXDN,LAMA3,LAMA5,PAPLN,MFAP5,LTBP1,LTBP3" 1268766 LOW Transmission across Chemical Synapses BioSystems: REACTOME 1.23E-03 1.00E+00 3.73E-02 3.21E-01 49 218 "ACTN2,ADCY2,ADCY5,ADCY9,AP2A1,AP2A2,AP2B1,PPFIA2,APBA1,CACNA1A,CACNA1B,CACNA1E,CACNA2D1,CACNA2D2,PDPK1,CHRNB3,GABBR2,PRKCA,PRKCB,DLG1,AKAP9,EPB41L1,NCALD,RRAS,CACNG2,SLC1A1,SLC1A2,SLC6A11,SLC18A2,CACNG4,CACNA2D3,GABRA2,GABRG2,NAAA,STXBP1,GNG12,ARHGEF9,RPS6KA6,PLCB1,SYN2,GRIA1,GRIA3,GRIK1,GRIK4,GRIN2D,KCNJ6,KCNJ9,KCNJ10,SLC17A7" M6355 LOW Erk and PI-3 Kinase Are Necessary for Collagen Binding in Corneal Epithelia MSigDB C2 BIOCARTA (v6.0) 1.23E-03 1.00E+00 3.73E-02 3.21E-01 10 24 "RHOA,MYLK,PIK3CA,PIK3R1,PTK2,ROCK1,FYN,SRC,ITGA1,ITGB1" 373900 LOW Synaptic vesicle cycle BioSystems: KEGG 1.26E-03 1.00E+00 3.80E-02 3.27E-01 19 63 "AP2A1,AP2A2,AP2B1,ATP6V1C2,ATP6V1A,ATP6V0A1,CACNA1A,CACNA1B,ATP6V0E1,CLTC,ATP6V1G1,DNM3,DNM2,STX1B,SLC18A2,STXBP1,CPLX4,ATP6V0E2,SLC17A7" 1272486 LOW Insulin resistance BioSystems: KEGG 1.29E-03 1.00E+00 3.82E-02 3.29E-01 28 107 "PIK3R3,NOS3,PDPK1,PIK3CA,PIK3CD,PIK3R1,PPARA,CPT1A,CPT1B,CREB5,PTPA,PRKAB1,PRKCB,PRKCE,PYGL,GFPT2,AKT3,PRKAG2,FOXO1,MTOR,G6PC,PPARGC1A,RPS6KA6,SLC27A4,MLX,TNF,NR1H2,INSR" 1270323 LOW L1CAM interactions BioSystems: REACTOME 1.29E-03 1.00E+00 3.82E-02 3.29E-01 27 102 "AP2A1,AP2A2,AP2B1,ANK3,CLTC,CSNK2A1,NCAN,DNM3,DLG1,RAC1,DNM2,DPYSL2,RANBP9,EGFR,EPHB2,SDCBP,SCN3B,CHL1,SPTAN1,SRC,NFASC,RPS6KA6,VAV2,ITGA1,ITGA2,ITGB1,KCNQ3" 1269357 LOW GPVI-mediated activation cascade BioSystems: REACTOME 1.33E-03 1.00E+00 3.88E-02 3.34E-01 17 54 "PIK3R3,RHOA,CDC42,PDPK1,PIK3CA,PIK3CD,PIK3R1,RAC1,AKT3,FCER1G,FYN,GRB2,PIK3R5,VAV1,VAV2,IL2RG,JAK1" 1427849 LOW Protein-protein interactions at synapses BioSystems: REACTOME 1.41E-03 1.00E+00 4.07E-02 3.51E-01 21 73 "APBA1,DLGAP1,DLGAP3,NRXN3,NRXN2,HOMER2,SIPA1L1,PTPRS,DLG1,DLG2,SHANK1,EPB41L1,DLGAP4,NLGN1,SHANK2,STXBP1,GRIA1,GRIA3,GRIN2D,GRM1,SHANK3" M1296 LOW IL-7 Signal Transduction MSigDB C2 BIOCARTA (v6.0) 1.48E-03 1.00E+00 4.22E-02 3.63E-01 8 17 "PIK3CA,PIK3R1,CREBBP,EP300,FYN,IL2RG,IL7R,JAK1" M18895 LOW The TrkA receptor binds nerve growth factor to activate MAP kinase pathways and promote cell growth. MSigDB C2 BIOCARTA (v6.0) 1.48E-03 1.00E+00 4.22E-02 3.63E-01 8 17 "RHOA,NGFR,NTRK1,PIK3CA,PIK3CD,AKT3,SOS1,GRB2" 83080 LOW T cell receptor signaling pathway BioSystems: KEGG 1.51E-03 1.00E+00 4.26E-02 3.67E-01 27 103 "PIK3R3,RHOA,NFATC1,NFATC2,NFATC3,NFKBIB,CBL,CD247,PAK2,CDC42,PDPK1,PIK3CA,PIK3CD,PIK3R1,PPP3CA,PPP3CB,CTLA4,DLG1,AKT3,PAK4,FYN,SOS1,GRB2,TNF,CBLC,VAV1,VAV2" 1269283 LOW DAP12 interactions BioSystems: REACTOME 1.61E-03 1.00E+00 4.48E-02 3.86E-01 76 374 "PIK3AP1,MARK3,ACTN2,ADCY2,ADCY5,ADCY9,PIP5K1B,FOXO4,ANGPT1,PIK3R3,ARRB1,BAD,NF1,KSR2,CD19,PAQR3,PDE1A,PDPK1,PIK3CA,PIK3CD,PIK3R1,PIP4K2A,PSMF1,PPP2R1A,PPP2R5C,PPP2R5E,CSK,PRKAR1A,PRKAR2A,PRKCA,PRKCE,DAB2IP,PSMB2,PSMB7,PSMC6,PSMD3,PSMD4,PTK2,PSMD6,PTPRA,RAC1,AKT3,RAP1B,RANBP9,AKAP9,EGFR,CNKSR1,SIRPB1,FGB,FGG,FOXO1,MTOR,FYN,SOS1,AGO2,SPTAN1,SRC,FRS2,TNRC6A,GRB2,GRIN2D,GSK3A,TSC2,VAV1,VAV2,VCL,VWF,YWHAB,IL2RG,INSR,ITPR1,ITPR2,ITPR3,JAK1,KIT,RASGEF1A" 138047 LOW EPHB forward signaling BioSystems: Pathway Interaction Database 1.69E-03 1.00E+00 4.68E-02 4.02E-01 12 33 "CDC42,PIK3CA,PIK3R1,MAP4K4,RAC1,ROCK1,EPHB1,EPHB2,RRAS,SRC,GRB2,GRIA1" M8626 HIGH Members of the BCR signaling pathway MSigDB C2 BIOCARTA (v6.0) 2.00E-05 6.18E-02 2.42E-02 2.08E-01 19 46 "AKT2,BAD,BCL2,BCR,CD22,DAG1,GRB2,ITPR1,ITPR2,ITPR3,LYN,NFATC1,NFATC2,PDPK1,PIK3CD,PPP3CA,PPP3CB,SOS1,VAV1" P00010 HIGH B cell activation PantherDB 2.28E-05 7.04E-02 2.42E-02 2.08E-01 22 58 "CD22,CHUK,MAPK14,HRAS,ITPR1,ITPR2,ITPR3,LYN,NFATC1,NFATC2,NFATC4,NFKBIL1,PIK3CD,PPP3CA,PPP3CB,PRKCB,MAP2K1,MAP2K2,RAC1,SOS1,VAV1,VAV2" 169346 HIGH Regulation of RAC1 activity BioSystems: Pathway Interaction Database 2.34E-05 7.25E-02 2.42E-02 2.08E-01 17 39 "ABR,PREX1,BCR,KALRN,ARHGEF2,CHN2,DOCK1,DOCK2,MCF2,RACGAP1,RAC1,RAP1GDS1,PREX2,SOS1,TRIO,VAV1,VAV2"