Option    , OTU Workflow                                                             , ASV Workflow                                                             
filename           , JAU-4_otu                                                                        , JAU-4_asv                                                                        
primertable        , JAU-4_otu.csv                                                                    , JAU-4_asv.csv                                                                    
units              , units.tsv                                                                         , units.tsv                                                                         
cores              ,20,20
multiqc            , False                                                                             , False                                                                             
demultiplexing     , False                                                                             , False                                                                             
read_sorting      , False                                                                             , False                                                                             
already_assembled , False                                                                             , False                                                                             
seq_rep           , OTU                                                                               , ASV                                                                               
threshold          ,0.9,0.9
minoverlap         ,15,15
minqual            ,1,1
minlen             ,100,100
maxlen             ,600,600
primer_offset     , False                                                                             , False                                                                             
mq                 ,30,30
barcode_removed   , True                                                                              , True                                                                              
all_primer        , False                                                                             , False                                                                             
clustering         ,1,1
length_overlap    ,0,0
representative     , most_common                                                                      , most_common                                                                      
beta               ,8,8
pseudo_count      ,1.2,1.2
abskew             ,16,16
filter_method     , split_sample                                                                     , split_sample                                                                     
cutoff             ,3,3
ampli_corr        , fdr                                                                               , fdr                                                                               
save_format       , png                                                                               , png                                                                               
plot_AmpDuo       , True                                                                              , True                                                                              
paired_End        , True                                                                              , True                                                                              
name_ext          , R1                                                                                , R1                                                                                
swarm              , True                                                                              , False                                                                             
blast              , True                                                                              , True                                                                              
database           , NCBI                                                                              , NCBI                                                                              
drop_tax_classes , ''                                                                                , ''                                                                                
db_path           , database/ncbi/nt                                                                  , database/ncbi/nt                                                                  
max_target_seqs  ,10,10
ident              ,90,90
evalue             ,1E-51,1E-51
out6               ,6 qseqid qlen length pident mismatch qstart qend sstart send gaps evalue stitle ,6 qseqid qlen length pident mismatch qstart qend sstart send gaps evalue stitle