ME transcript sum_total_coverage total_SJs total_coverages len_micro_exon_seq_found micro_exon_seq_found total_number_of_micro_exons_matches U2_scores mean_conservations_vertebrates P_MEs total_ME ME_P_value ME_type ensembl_transcript_id type Alt5_3 ME_cluster.type ME_cluster.name ME_cluster.number PC1 PC2 PC3 In.10_percent_of_bulk MHN.diff F.diff HNM.diff_age HNM.change_dir F.diff_age F.change_dir SKM.diff Heart.diff AG.diff chr10_+_101864522_101864547 ENSMUST00000146230.7 18 chr10:101864030+102011732 18 25 ATATCCATGTGATGGGATTACACAG 1 84.6188680949 -0.0601724101038 0 chr10_+_101864522_101864547|84.6188680949|-0.0601724101038 0 IN ENSMUST00000146230 Novel NA Excluded E1 6 -0.000549414063378275 0.0009845677095745 0.00235394752347453 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_101889302_101889318 ENSMUST00000146230.7 30 chr10:101864030+102011732 30 16 AAGAACAACAGAATGG 1 84.6753537943 None 1.34315987554e-07 chr10_+_101889302_101889318|84.6753537943|None 2.8974111443425e-08 IN ENSMUST00000146230 Novel Alt3 Excluded E1 6 0.000210051145214433 -0.00146233741127024 0.000207299831387723 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_102380225_102380232 ENSMUST00000179929.7 160 chr10:102378304+102385005 160 7 TCCTGTG 1 76.2792517634 0.405090905049 0.0015937491152 chr10_+_102380225_102380232|76.2792517634|0.405090905049 0.00123909762759944 IN ENSMUST00000179929 Novel NA Excluded E1 6 0.000120850799400681 -0.00078873992594448 0.000548567626455441 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_106859776_106859806 ENSMUST00000029404.16 0 chr10:106858398+106863253 0 30 CCAAGTGATCTAAGGAAACATCGGAGAAAG 1 76.4275094609 4.7085882548 0 chr10_+_106859776_106859806|76.4275094609|4.7085882548 0 IN ENSMUST00000029404 Annotated NA Included I1 1 6.3985549693789e-06 -3.04750908022528e-05 -1.42855984215466e-05 TRUE TRUE FALSE FALSE FALSE FALSE chr10_+_106882735_106882744 ENSMUST00000029404.16 799 chr10:106869972+106893431 799 9 CACATCGGG 1 73.7771355349 3.38323080998 0.000349311604444 chr10_+_106882735_106882744|73.7771355349|3.38323080998 0.000321784571283734 IN ENSMUST00000029404 Missing in GENCODE NA Excluded E4 11 -0.00233418228374317 -0.0104201261378047 0.0280832863970274 TRUE TRUE FALSE 13.5 -1 FALSE FALSE FALSE chr10_+_106904816_106904846 ENSMUST00000029404.16 0 chr10:106903705+106906365 0 30 AAAGAATCTGAGGAAGGAAGCTGGGCCCAG 1 78.5552525606 5.33779412508 0 chr10_+_106904816_106904846|78.5552525606|5.33779412508 0 IN ENSMUST00000029404 Annotated NA Included I1 1 -8.73132902049765e-06 4.1639611805197e-05 1.8574625812213e-05 TRUE TRUE TRUE 13.5 1 12.5 1 FALSE FALSE TRUE chr10_+_106904820_106904846 ENSMUST00000219024.1 0 chr10:106903705+106906365 0 26 AATCTGAGGAAGGAAGCTGGGCCCAG 1 71.4737895824 5.25366667509 5.83977310953e-13 chr10_+_106904820_106904846|71.4737895824|5.25366667509 5.7065463465733e-13 IN ENSMUST00000219024 Annotated NA FALSE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE TRUE chr10_+_108267403_108267420 ENSMUST00000219263.1 0 chr10:108264768+108268571 0 17 ACGGATTCTGTTTCCAG 1 87.1896579518 1.73714286905 2.20141349372e-07 chr10_+_108267403_108267420|87.1896579518|1.73714286905 3.70087823720056e-08 IN ENSMUST00000219263 Annotated Alt5 Included I2 10 -0.00415984886288055 -0.00249038668231195 0.00561516951116149 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_110766138_110766162 ENSMUST00000174810.7 67 chr10:110765774+110767116 67 24 GGTGGAGATGAAAGTTGTCTACAG 1 85.3361259918 1.91778571105 0 chr10_+_110766138_110766162|85.3361259918|1.91778571105 0 IN ENSMUST00000174810 Annotated NA Neuronal N6 15 0.0156856174336417 0.00719560919899432 0.0148352202376099 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_111494794_111494824 ENSMUST00000065917.15 0 chr10:111494293+111495324,chr10:111494293+111495050 0 30 TATGATGAAGAAGGTGAAGAAGCTGACGAG 1 82.2155673137 5.16441166401 0 chr10_+_111494794_111494824|82.2155673137|5.16441166401 0 IN ENSMUST00000065917 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_11188144_11188165 ENSMUST00000159553.7 1 chr10:11188036+11189630 1 21 GCATGGAAGAAGGAATATAAG 1 74.4506480888 5.10051993668 1.39355194051e-12 chr10_+_11188144_11188165|74.4506480888|5.10051993668 1.24333876527771e-12 IN ENSMUST00000159553 Novel Alt5 Excluded E3 2 -0.000450273813612417 0.00249493296005385 0.00426621649982173 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_116362523_116362541 ENSMUST00000218553.1 0 chr10:116362427+116362643 0 18 CAACCGGAAAACTTCTTG 1 79.4436248379 2.78649998558 2.8230715543e-09 chr10_+_116362523_116362541|79.4436248379|2.78649998558 1.42543254977312e-09 IN ENSMUST00000218553 Annotated NA Included I1 1 -2.49160393590879e-28 1.70762094671791e-29 5.11950864329488e-28 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_118156833_118156863 ENSMUST00000020437.12 246 chr10:118152274+118157194 246 30 GGTTCTCTAAATGCCATGTGGTATGCAGAG 1 79.6651136897 3.22602942323 0 chr10_+_118156833_118156863|79.6651136897|3.22602942323 0 IN ENSMUST00000020437 Annotated NA Muscular M2 20 0.00591317169156016 -0.016164292415021 0.102546935836079 TRUE TRUE TRUE FALSE FALSE FALSE chr10_+_127065248_127065264 ENSMUST00000120226.7 0 chr10:127064630+127065952 0 16 AGATGTTCCGTCGGAA 1 79.0103836667 3.50494999513 3.03145452074e-07 chr10_+_127065248_127065264|79.0103836667|3.50494999513 1.64330381191569e-07 IN ENSMUST00000120226 Annotated Alt5 Excluded E1 6 -0.000204805183248688 6.33466843169281e-05 -0.000431250584073663 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_127167862_127167881 ENSMUST00000217678.1 1 chr10:127167542+127169743 1 19 GCCAACACAGCAGACACAG 1 73.1466087364 3.36056520434 3.09512415697e-11 chr10_+_127167862_127167881|73.1466087364|3.36056520434 2.91697777043964e-11 IN ENSMUST00000217678 Novel Alt5 Excluded E3 2 0.00029541485855491 0.00372967410014977 -0.00415977779889944 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_127270483_127270492 ENSMUST00000026479.10 59 chr10:127267482+127274713 59 9 TTTGCACAA 1 72.8516815699 4.60730778254 0.000107550798297 chr10_+_127270483_127270492|72.8516815699|4.60730778254 0.000102241011362358 IN ENSMUST00000026479 Missing in GENCODE NA Neuronal N6 15 0.0131391445448268 0.00603485531462466 0.00461255399923905 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr10_+_127272438_127272444 ENSMUST00000026479.10 5272 chr10:127267482+127274713 5272 6 GAGCTG 1 69.0568507503 4.85660002232 0.00686282801791 chr10_+_127272438_127272444|69.0568507503|4.85660002232 0.00682874049361071 IN ENSMUST00000026479 Novel NA Neuro-Muscular NM2 9 0.042090767779503 -0.0129755797748004 0.0388617707879676 TRUE TRUE TRUE 10.5 1 12.5 1 TRUE TRUE TRUE chr10_+_127272441_127272444 ENSMUST00000026479.10 108 chr10:127267482+127274713 108 3 CTG 1 67.4238408943 4.70600002153 0.356563171289 chr10_+_127272441_127272444|67.4238408943|4.70600002153 0.356002865171776 RESCUED ENSMUST00000026479 Novel NA Excluded E1 6 0.00327081012340397 0.000158562754611531 0.00799608233167466 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_127728446_127728476 ENSMUST00000179960.7 0 chr10:127728276+127729113 0 30 GACCAAAGGAGACATCACTTCCACAGAAAC 1 78.7249858725 1.19920586269 0 chr10_+_127728446_127728476|78.7249858725|1.19920586269 0 IN ENSMUST00000179960 Annotated NA Included I1 1 -6.86389920577943e-10 -2.76276047550802e-09 2.18365709298125e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_128282101_128282119 ENSMUST00000085708.2 0 chr10:128281708+128282711 0 18 GAATTCAGACTTACCAGG 1 92.2910140471 1.06450001133 1.4275428728e-08 chr10_+_128282101_128282119|92.2910140471|1.06450001133 2.43208242434179e-09 IN ENSMUST00000085708 Annotated Alt5 Included I2 10 -0.00281570765220152 -0.00455350735583429 -0.00157121979097224 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_128311850_128311879 ENSMUST00000005825.7 33 chr10:128310800+128312877 33 29 CATTTTGCAGATTTATTTATTGATTATAT 1 83.6247750283 0.20639393964 0 chr10_+_128311850_128311879|83.6247750283|0.20639393964 0 IN ENSMUST00000005825 Missing in GENCODE NA Excluded E1 6 0.000964611871154035 0.000730951789509587 0.00228467498212044 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_128765378_128765391 ENSMUST00000163377.9 1 chr10:128765240+128765609 1 13 CTGGGCTTGAGGG 1 62.8943852421 0.347764702733 2.04890964195e-08 chr10_+_128765378_128765391|62.8943852421|0.347764702733 2.04882686372088e-08 IN ENSMUST00000163377 Novel NA Excluded E2 3 -0.00133117529840398 0.00130620461769007 0.00109696718881748 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_128848760_128848789 ENSMUST00000105230.3 0 chr10:128848310+128851156 0 29 GTTTGGAATTTCTTCAGTTCCAACAAAAG 1 93.4906100984 2.42030302322 0 chr10_+_128848760_128848789|93.4906100984|2.42030302322 0 IN ENSMUST00000105230 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_128851156_128851182 ENSMUST00000105230.3 0 chr10:128848789+128853182,chr10:128848789+128851737 0 26 GTTTATCATCTGACACCAAGCCTATG 1 83.6894780849 1.77859998867 6.47926157171e-13 chr10_+_128851156_128851182|83.6894780849|1.77859998867 1.6020518245341e-13 IN ENSMUST00000105230 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_14110772_14110786 ENSMUST00000191138.6 31 chr10:14066684+14117518,chr10:14066684+14126451 1,30 14 AAAGCTTCTTGAAG 1 77.8441058916 0.0822777785361 7.39469850797e-07 chr10_+_14110772_14110786|77.8441058916|0.0822777785361 4.77572699497664e-07 IN ENSMUST00000191138 Novel Alt5 Excluded E1 6 0.000696424804054078 0.000965061430907605 -0.00237785581869097 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_14117577_14117600 ENSMUST00000015645.10 7 chr10:14066684+14126451 7 23 CTTCCTGAGTTCTGGGATTGCAG 1 83.6825727427 -0.0693703614589 0 chr10_+_14117577_14117600|83.6825727427|-0.0693703614589 0 IN ENSMUST00000015645 Novel Alt5 Excluded E1 6 0.00031727002915399 4.75662653890965e-05 0.00180976379262403 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_19597516_19597530 ENSMUST00000172253.1 1 chr10:19592197+19601319 1 14 GTAAAGGTGTATTC 1 84.5412520483 0.870166665564 1.32480627468e-07 chr10_+_19597516_19597530|84.5412520483|0.870166665564 2.90812823822151e-08 IN ENSMUST00000172253 Novel Alt5 Excluded E2 3 -0.00173926978379554 2.5560813027672e-05 -0.00146579004165467 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_20019557_20019581 ENSMUST00000120259.7 351 chr10:20000705+20023607 351 24 GAAATTATTTGCCAGAAGAATACT 1 82.6479453171 3.93589287677 0 chr10_+_20019557_20019581|82.6479453171|3.93589287677 0 IN ENSMUST00000120259 Annotated NA Included I1 1 -0.00227366703433194 0.00795704246257277 -0.00218830873486444 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_20111777_20111798 ENSMUST00000095806.9 0 chr10:20110895+20118144 0 21 CTCTCTCGACTGGATCGAATG 1 86.7160205286 2.37124002341 1.6425474314e-09 chr10_+_20111777_20111798|86.7160205286|2.37124002341 2.85943158040425e-10 IN ENSMUST00000095806 Annotated NA Included I1 1 -2.65750387062595e-11 -1.20056872636156e-11 5.43616706214216e-11 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_20321861_20321883 ENSMUST00000092678.9 50 chr10:20318111+20322002 50 22 GGATAATAGGCCTGTTTTATAA 1 90.8776286005 0.392038468415 8.58202398035e-13 chr10_+_20321861_20321883|90.8776286005|0.392038468415 1.35558231306732e-13 IN ENSMUST00000092678 Novel NA Excluded E1 6 6.75937472741467e-05 -3.03507681612741e-05 0.000152531799498729 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_21007751_21007778 ENSMUST00000214893.1 1785 chr10:21000705+21017912 1785 27 GAGGTGATACGATCCTGTGCTGCAAAA 1 86.3998594349 1.43054838154 0 chr10_+_21007751_21007778|86.3998594349|1.43054838154 0 IN ENSMUST00000214893 Annotated NA Included I2 10 -0.00261695429123839 0.0079251069636928 -0.000488864322433591 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_21007754_21007778 ENSMUST00000214893.1 47 chr10:21000705+21017912 47 24 GTGATACGATCCTGTGCTGCAAAA 1 84.2506061941 1.26239285099 0 chr10_+_21007754_21007778|84.2506061941|1.26239285099 0 IN ENSMUST00000214893 Novel NA Other O1 4 0.0011167982296764 0.00143139843857315 -0.0189192020678169 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_24883203_24883221 ENSMUST00000176502.1 450 chr10:24879785+24888399,chr10:24882649+24888399 5,445 18 ACCTTGAACATTGCTCAG 1 77.8186251788 5.88759086349 3.25599103235e-10 chr10_+_24883203_24883221|77.8186251788|5.88759086349 2.11021311535831e-10 IN ENSMUST00000176502 Annotated NA Neuro-Muscular NM2 9 0.0463637686064536 -0.0155166312497744 0.0125690231384297 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr10_+_28554769_28554799 ENSMUST00000166468.1 267 chr10:28551756+28560004 267 30 GAGGAGCTACTACTCTTACTCCTACTACCT 1 79.6869000444 6.10891171063 0 chr10_+_28554769_28554799|79.6869000444|6.10891171063 0 IN ENSMUST00000166468 Annotated NA Neuronal N4 13 0.0423452776643493 0.0205730902921386 -0.00646179266018277 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr10_+_28564094_28564106 ENSMUST00000219621.1 765 chr10:28560165+28566494,chr10:28562142+28565095,chr10:28562142+28566494 10,295,460 12 TCCCTATAACCG 1 78.2111938843 3.69137492459 6.83823366709e-07 chr10_+_28564094_28564106|78.2111938843|3.69137492459 4.19183529554168e-07 IN ENSMUST00000219621 Annotated NA Neuronal N3 17 0.0605224662184709 0.0230634483630926 0.038624262027727 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr10_+_28570173_28570191 ENSMUST00000166468.1 0 chr10:28569973+28573367 0 18 ATTTGGCTGTACAGGGAT 1 78.2016990387 5.97031821988 4.90690569288e-08 chr10_+_28570173_28570191|78.2016990387|5.97031821988 3.01210496544968e-08 IN ENSMUST00000166468 Annotated NA FALSE TRUE TRUE FALSE FALSE FALSE chr10_+_29217952_29217971 ENSMUST00000217011.1 1 chr10:29199280+29218054 1 19 TTTAATTATGTCATTGACG 1 73.1279988391 0.775956501698 2.66467736765e-10 chr10_+_29217952_29217971|73.1279988391|0.775956501698 2.51276111029597e-10 IN ENSMUST00000217011 Novel NA Excluded E2 3 0.00080001862328405 -0.000373542614228356 -0.00436253176819892 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_33321304_33321334 ENSMUST00000095762.4 0 chr10:33305090+33332435 0 30 CTGCAGCTAGAAAGGATGAGAAGAAAGAAG 1 87.836723045 1.56452943023 0 chr10_+_33321304_33321334|87.836723045|1.56452943023 0 IN ENSMUST00000095762 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_33332435_33332465 ENSMUST00000095762.4 0 chr10:33321334+33333231 0 30 AATCAAAGAAAATGAGAAAACCTACAGAAG 1 80.904035665 1.34317648805 0 chr10_+_33332435_33332465|80.904035665|1.34317648805 0 IN ENSMUST00000095762 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_33333231_33333249 ENSMUST00000095762.4 0 chr10:33332465+33334981 0 18 AACAACCCAAGGGAAAAA 1 85.4259644942 1.53495457667 3.62924759134e-08 chr10_+_33333231_33333249|85.4259644942|1.53495457667 7.15227099767901e-09 IN ENSMUST00000095762 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_33335139_33335166 ENSMUST00000095762.4 0 chr10:33335014+33337512 0 27 CAAAGACACCAAAAAAGGAACATCCAG 1 87.0692633101 1.47493550566 0 chr10_+_33335139_33335166|87.0692633101|1.47493550566 0 IN ENSMUST00000095762 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_33337512_33337539 ENSMUST00000095762.4 0 chr10:33335166+33343075 0 27 GTCCAAGTGAAAAACTCAAAAAAGCAA 1 86.9789759605 1.80774193389 0 chr10_+_33337512_33337539|86.9789759605|1.80774193389 0 IN ENSMUST00000095762 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_33433700_33433730 ENSMUST00000095762.4 0 chr10:33399145+33437717 0 30 AGCCACAACTAAAAAACGAAGAGAAGTCAA 1 77.9609788088 1.31041175127 0 chr10_+_33433700_33433730|77.9609788088|1.31041175127 0 IN ENSMUST00000095762 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_33438791_33438818 ENSMUST00000095762.4 0 chr10:33437747+33439174 0 27 CATCATCTGACAAAGGCCAAACACGCA 1 80.4144469013 0.362645149712 0 chr10_+_33438791_33438818|80.4144469013|0.362645149712 0 IN ENSMUST00000095762 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_33444053_33444074 ENSMUST00000095762.4 0 chr10:33442932+33444723 0 21 ATAAGCCTAAACCATCTTCAA 1 89.0259610829 0.99576000452 4.01541910833e-10 chr10_+_33444053_33444074|89.0259610829|0.99576000452 6.24305052099317e-11 IN ENSMUST00000095762 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_33444723_33444750 ENSMUST00000095762.4 0 chr10:33444074+33445419 0 27 AGGGAGCACCAGAAGTTCCAGACTCAG 1 86.6817700312 0.919516139453 0 chr10_+_33444723_33444750|86.6817700312|0.919516139453 0 IN ENSMUST00000095762 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_33450978_33451002 ENSMUST00000095762.4 0 chr10:33447032+33464557 0 24 CAGAAAAACCTGGAAAAATACCAA 1 83.3335076932 0.959892861146 6.2161831238e-11 chr10_+_33450978_33451002|83.3335076932|0.959892861146 1.62231339473351e-11 IN ENSMUST00000095762 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_3952310_3952333 ENSMUST00000120274.7 0 chr10:3949705+3956545 0 23 AAACTTCACAAGATATCCAGAAG 1 91.5413010417 1.85900000207 9.68185531747e-11 chr10_+_3952310_3952333|91.5413010417|1.85900000207 1.57396318201108e-11 IN ENSMUST00000120274 Annotated NA Included I1 1 -3.23691905723523e-15 1.45687437721662e-14 9.71657879898125e-15 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_44271263_44271288 ENSMUST00000039286.4 53 chr10:44268584+44286031 53 25 GGATCTACTTGTCTCTGCCTCCCAG 1 79.3145985184 0.0743448271834 0 chr10_+_44271263_44271288|79.3145985184|0.0743448271834 0 IN ENSMUST00000039286 Novel NA Excluded E1 6 0.0001341118476517 -0.000187139821962958 0.000218409877907952 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_44327332_44327354 ENSMUST00000039286.4 29 chr10:44319554+44346956 29 22 TCCGCAGACTCGGGACTCTGGA 1 76.8495985044 -0.123884616814 6.07869310443e-12 chr10_+_44327332_44327354|76.8495985044|-0.123884616814 4.44944081579024e-12 IN ENSMUST00000039286 Novel NA Excluded E1 6 0.000158390562850969 4.35294989138028e-05 0.000114256024149311 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_45701010_45701024 ENSMUST00000150511.7 0 chr10:45700675+45709880 0 14 TTCGTTACTGGCAG 1 91.1273257754 4.94899996784 3.42236563931e-05 chr10_+_45701010_45701024|91.1273257754|4.94899996784 5.45693116216217e-06 IN ENSMUST00000150511 Annotated Alt5 Excluded E2 3 0.000299181835117129 0.00282090774146295 -0.0048021601764099 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_58256896_58256904 ENSMUST00000162860.7 4 chr10:58255882+58258240 4 8 GTGTACAG 1 63.8238443055 2.68716669828 0.000139822724702 chr10_+_58256896_58256904|63.8238443055|2.68716669828 0.00013981006746 IN ENSMUST00000162860 Novel Alt5 Excluded E2 3 -0.00119997057145762 0.000405530752775526 -0.00187625821547843 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_59756705_59756717 ENSMUST00000165563.7 282 chr10:59750547+59768137 282 12 GAGTTCTGGCAG 1 78.1923077733 3.74424995482 4.09175736082e-06 chr10_+_59756705_59756717|78.1923077733|3.74424995482 2.51516800209295e-06 IN ENSMUST00000165563 Annotated NA Excluded E2 3 -0.000594487307917608 -0.0143469787617747 0.0174074615405938 TRUE FALSE FALSE TRUE FALSE FALSE chr10_+_59767083_59767089 ENSMUST00000172034.1 3411 chr10:59750547+59768137,chr10:59762656+59768137 3396,15 6 ACCGAG 1 72.190011678 4.62739995718 0.00520396687656 chr10_+_59767083_59767089|72.190011678|4.62739995718 0.00502447343247447 IN ENSMUST00000172034 Annotated NA Neuronal N6 15 0.0223690105007157 0.00182876965336545 0.0606776313517252 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr10_+_60121231_60121240 ENSMUST00000138976.2 0 chr10:60115081+60121477,chr10:60106656+60121477 0 9 GAGGTAGAA 1 83.7323257334 2.97838465067 0.0240548447641 chr10_+_60121231_60121240|83.7323257334|2.97838465067 0.00591167751095145 IN ENSMUST00000138976 Annotated NA Included I1 1 -2.05310638352833e-18 1.15305716942778e-17 5.48117473749719e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_60297536_60297545 ENSMUST00000105465.7 13372 chr10:60296002+60299097 13372 9 CAGGATCAG 1 86.5124510398 2.02046157076 4.59243245875e-05 chr10_+_60297536_60297545|86.5124510398|2.02046157076 8.13017149570161e-06 IN ENSMUST00000105465 Annotated NA Neuronal N2 8 0.0669742964001514 -0.0233586516635701 -0.00559925290273972 TRUE TRUE TRUE 10.5 1 12.5 1 TRUE TRUE TRUE chr10_+_60297539_60297545 ENSMUST00000105465.7 2798 chr10:60296002+60299097 2798 6 GATCAG 1 82.957166542 1.98970003426 0.00293776297329 chr10_+_60297539_60297545|82.957166542|1.98970003426 0.000813347791772223 IN ENSMUST00000105465 Novel NA Neuro-Muscular NM4 16 0.0409960305326459 -0.00840754706088271 0.0227195153228968 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE TRUE FALSE chr10_+_60367765_60367793 ENSMUST00000020301.13 0 chr10:60364308+60368528,chr10:60364308+60368531 0 28 GTGCCCAGGAGTTGGTGAGGATGGACAG 1 88.8098238713 4.1254374492 0 chr10_+_60367765_60367793|88.8098238713|4.1254374492 0 IN ENSMUST00000020301 Annotated NA Included I1 1 3.62182133701535e-18 2.2432275670741e-17 -7.68726527620614e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_61680867_61680897 ENSMUST00000218474.1 4 chr10:61680413+61682098,chr10:61680413+61684060,chr10:61680413+61684879 1,2,1 30 ATGAATGTTTTCTTCGTCATTTTTACCCAG 1 77.3580733791 -0.203441174646 0 chr10_+_61680867_61680897|77.3580733791|-0.203441174646 0 IN ENSMUST00000218474 Novel Alt5 Excluded E1 6 -0.00020886850661198 2.93845171688612e-05 0.000245839940546187 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_63052428_63052458 ENSMUST00000020262.4 0 chr10:63052310+63053863 0 30 GACTTCCATGAAGTTGAAGACTTGATAAAG 1 81.0141413468 1.78302940283 0 chr10_+_63052428_63052458|81.0141413468|1.78302940283 0 IN ENSMUST00000020262 Annotated NA Included I1 1 -0.000142606501957356 -0.000582816965133353 0.00010547318291687 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_63067657_63067687 ENSMUST00000020266.14 0 chr10:63067538+63071406 0 30 GACTTCCATGAAGTTGAAGACTTGATAAAG 1 80.9161545406 1.65976469054 0 chr10_+_63067657_63067687|80.9161545406|1.65976469054 0 IN ENSMUST00000020266 Annotated NA Included I1 1 -0.000108713389677731 -0.00057718608718368 0.000259854669698493 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_63303844_63303868 ENSMUST00000020258.9 265 chr10:63299239+63306347 265 24 GATGTCAGCCATGGAGTAACTGAG 1 83.0585024391 3.80525003161 0 chr10_+_63303844_63303868|83.0585024391|3.80525003161 0 IN ENSMUST00000020258 Annotated Alt5 Neuronal N3 17 0.0517018463001109 0.0112029650091482 0.0209924567844458 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr10_+_69823077_69823101 ENSMUST00000218680.1 385 chr10:69822393+69824317 385 24 ATGGTGGTGAATAGAGCAACTGAG 1 73.1791328982 5.90621424041 0 chr10_+_69823077_69823101|73.1791328982|5.90621424041 0 IN ENSMUST00000218680 Annotated NA Excluded E2 3 0.00551424351835867 0.00103783994416805 0.0207132127986216 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_69929446_69929458 ENSMUST00000182795.7 1275 chr10:69927818+69932393,chr10:69927818+69932408 89,1186 12 TCCCAAGATAAG 1 76.3157810237 3.54956243187 1.0614743412e-06 chr10_+_69929446_69929458|76.3157810237|3.54956243187 8.22298126812449e-07 IN ENSMUST00000182795 Annotated NA Neuronal N1 18 0.0602153486416609 -0.00657031315761262 -0.014093235403266 TRUE TRUE TRUE 11.5 1 12.5 1 TRUE FALSE FALSE chr10_+_69980823_69980850 ENSMUST00000218680.1 152 chr10:69980394+69982115 152 27 GAGACAGAGTCAGATCAAGATGATGAG 1 71.4877383737 5.56448395022 0 chr10_+_69980823_69980850|71.4877383737|5.56448395022 0 IN ENSMUST00000218680 Annotated NA Neuronal N1 18 0.0640493469014286 0.0332952075482559 -0.0352061475869033 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE TRUE chr10_+_70006799_70006802 ENSMUST00000182029.7 8 chr10:70004991+70015567,chr10:70004991+70015570 1,7 3 CAG 1 67.7735619513 3.08642859118 0.475390054515 chr10_+_70006799_70006802|67.7735619513|3.08642859118 0.474426862943209 RESCUED ENSMUST00000182029 Novel Alt3 Excluded E4 11 0.00365939906662763 0.00205542940801325 0.00628339637483773 TRUE FALSE FALSE TRUE FALSE FALSE chr10_+_70015816_70015834 ENSMUST00000218680.1 20 chr10:70015653+70023831 20 18 ATGTATATATGTATATAT 1 78.2815593216 -0.320590908554 4.63614924229e-10 chr10_+_70015816_70015834|78.2815593216|-0.320590908554 2.81274226132666e-10 IN ENSMUST00000218680 Novel NA Excluded E1 6 2.27402806791776e-06 5.89010159263027e-07 3.45295235561449e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_72663889_72663900 ENSMUST00000160337.1 2 chr10:72657388+72668811 2 11 GGAATATGACG 1 74.5899978949 -0.0586666696394 1.0624471496e-05 chr10_+_72663889_72663900|74.5899978949|-0.0586666696394 9.40593823151037e-06 IN ENSMUST00000160337 Novel NA Excluded E1 6 0.00210083913783744 0.000564686282324143 0.00285120105854155 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_74051092_74051107 ENSMUST00000064562.13 119 chr10:73947146+74051597 119 15 ACTGGCAATACGAGG 1 82.0527738708 3.95757903551 3.79921330618e-07 chr10_+_74051092_74051107|82.0527738708|3.95757903551 1.22147338355028e-07 IN ENSMUST00000064562 Annotated NA Other O2 21 0.0040086721929564 0.00349981278421642 -0.0134322861464129 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_74626146_74626155 ENSMUST00000092420.12 259 chr10:74624423+74626686 259 9 GTTTAAAGT 1 78.9844541066 2.7593846344 3.35270508919e-05 chr10_+_74626146_74626155|78.9844541066|2.7593846344 1.82503322234684e-05 IN ENSMUST00000092420 Annotated NA Included I3 5 0.000333024508151361 -0.0112228428081562 -0.00302131829206198 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_74628927_74628933 ENSMUST00000064562.13 113 chr10:74626842+74630510 113 6 GCATAA 1 77.2066392241 3.35129998922 0.00348246441886 chr10_+_74628927_74628933|77.2066392241|3.35129998922 0.00244399643984028 IN ENSMUST00000064562 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_74635629_74635648 ENSMUST00000146682.7 0 chr10:74291075+74643363,chr10:74633386+74637159,chr10:74626842+74642281,chr10:74317169+74643363,chr10:74628933+74641342,chr10:74628933+74642281,chr10:74624423+74637159,chr10:74632193+74637159,chr10:74385960+74643363,chr10:74303206+74643363,chr10:74626842+74637159 0 19 GGGAGGCTTTGCACCAGAG 1 90.1753207695 2.00604347561 1.36424204156e-08 chr10_+_74635629_74635648|90.1753207695|2.00604347561 2.11805728511649e-09 IN ENSMUST00000146682 Annotated NA FALSE TRUE FALSE FALSE FALSE FALSE chr10_+_75228905_75228931 MmuEX0044616 0 chr10:75212219+75230681,chr10:75222205+75229770,chr10:75212491+75230681 0 26 GCATCAAACACAAAAGTAGTACACAG 1 85.2430765054 0.0185333311558 1.67310609811e-12 chr10_+_75228905_75228931|85.2430765054|0.0185333311558 3.36619621066347e-13 IN MmuEX0044616 Missing in GENCODE NA Excluded E1 6 0.000213215949772451 0.000251720689452669 0.000796527418301555 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_76542467_76542495 ENSMUST00000162475.7 0 chr10:76541916+76543850 0 28 GCTGGGCCTTGATGGCATGAAAATGCAG 1 86.2740095728 4.86268739426 0 chr10_+_76542467_76542495|86.2740095728|4.86268739426 0 IN ENSMUST00000162475 Annotated NA Included I1 1 -3.92776565394119e-25 -2.84045753694868e-23 -7.25776425545412e-25 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_77586379_77586404 ENSMUST00000009435.11 1 chr10:77581927+77587250 1 25 TTGGGTCATTATGGATAGAGATACG 1 79.3285818364 -0.175551722051 0 chr10_+_77586379_77586404|79.3285818364|-0.175551722051 0 IN ENSMUST00000009435 Annotated Alt5 Excluded E1 6 0.000408079058461453 -0.000216383485770626 0.00210633393560344 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_77622409_77622416 ENSMUST00000174113.7 1 chr10:77614051+77630725 1 7 TATAAGC 1 65.2340532947 1.9467273192 0.0039648882493 chr10_+_77622409_77622416|65.2340532947|1.9467273192 0.00396373252491311 IN ENSMUST00000174113 Novel Alt5 Excluded E2 3 -0.00166151531067102 -0.00124087212378772 -0.00539327603179378 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_77979752_77979771 ENSMUST00000105397.9 0 chr10:77978781+77980500 0 19 GGGCAGCCAGCTCACAGAT 1 87.0995087091 3.00908700563 6.17001205683e-09 chr10_+_77979752_77979771|87.0995087091|3.00908700563 1.04370279085941e-09 IN ENSMUST00000105397 Annotated Alt3 Excluded E3 2 -0.00200789893369534 -0.0020153592604513 0.00163048285038409 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_78077143_78077173 ENSMUST00000105393.2 0 chr10:78075354+78077892,chr10:78075354+78083169 0 30 GACCCAAGACTGTACAGCTTGAACTTACAG 1 85.4436076436 0.223470588492 0 chr10_+_78077143_78077173|85.4436076436|0.223470588492 0 IN ENSMUST00000105393 Annotated NA Included I1 1 -2.12132662583768e-07 -1.06992249392246e-06 2.19388287876629e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_79685350_79685367 ENSMUST00000219791.1 3 chr10:79685102+79687848 3 17 TACACGGACATCATCCG 1 64.5310204028 4.0412857623 6.19593265583e-10 chr10_+_79685350_79685367|64.5310204028|4.0412857623 6.19491569153752e-10 IN ENSMUST00000219791 Novel Alt5 Excluded E1 6 4.61383065165215e-05 -4.44254123463603e-05 0.000612107181898562 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_79711255_79711280 ENSMUST00000179781.7 0 chr10:79710920+79711493 0 25 AGGATGACCCTGGCGCCGCCCCACT 1 76.0590058731 1.35668966059 4.83169060317e-13 chr10_+_79711255_79711280|76.0590058731|1.35668966059 3.83582055007992e-13 IN ENSMUST00000179781 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_79812342_79812364 ENSMUST00000046945.12 0 chr10:79809620+79815184 0 22 ACTCCGTTGGGTACCCCAAAAG 1 89.3920132743 1.27257691926 3.14798853651e-10 chr10_+_79812342_79812364|89.3920132743|1.27257691926 4.8726467305471e-11 IN ENSMUST00000046945 Annotated NA Included I1 1 -5.47922770296876e-84 5.68482063314548e-84 1.76341732003491e-83 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_80055922_80055947 ENSMUST00000144698.7 0 chr10:80055119+80056039 0 25 TGCCATCAAATGGAACTTTACCAAG 1 86.1198478076 3.7723448256 7.91366971953e-13 chr10_+_80055922_80055947|86.1198478076|3.7723448256 1.45106149318508e-13 IN ENSMUST00000144698 Annotated Alt5 Included I1 1 -0.00149271253215579 -1.24256792608214e-05 0.000845574722814469 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_80170981_80170994 ENSMUST00000054666.6 4 chr10:80170764+80172413 4 13 CTACACACAACGA 1 74.5132450161 4.00735293416 9.49948980589e-08 chr10_+_80170981_80170994|74.5132450161|4.00735293416 8.4463402050261e-08 IN ENSMUST00000054666 Novel NA Neuronal N5 14 0.0297724289867501 -0.00227165949865714 0.0430334967932328 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_80284229_80284259 ENSMUST00000105362.7 0 chr10:80283177+80284408 0 30 GAATGTGGGTGCCAGCAGGACAGGCCATTG 1 82.7222813262 3.01538236045 0 chr10_+_80284229_80284259|82.7222813262|3.01538236045 0 IN ENSMUST00000105362 Annotated NA Included I1 1 -3.92655829767634e-82 -1.49123237209209e-80 -2.75295539692808e-81 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_80703729_80703756 ENSMUST00000218184.1 0 chr10:80703280+80703852 0 27 GCCGCATTGACTGTCAGCGTCACTGTG 1 83.7153731183 1.41880645855 0 chr10_+_80703729_80703756|83.7153731183|1.41880645855 0 IN ENSMUST00000218184 Annotated Alt3 Other O1 4 -0.00140131132816678 8.2904616690126e-05 0.0188760624705778 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_80704179_80704194 ENSMUST00000219987.1 0 chr10:80704086+80704417,chr10:80703928+80704417 0 15 AAACACCTGGCACAA 1 81.0791896705 1.32173684455 2.90572601203e-07 chr10_+_80704179_80704194|81.0791896705|1.32173684455 1.10584179147111e-07 IN ENSMUST00000219987 Annotated Alt5 Included I1 1 1.88110003663661e-20 -3.50103762035565e-17 8.64892681424555e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_80704417_80704435 ENSMUST00000219987.1 0 chr10:80704194+80704620,chr10:80704194+80704698 0 18 ACAGGATGAAAAGATGAG 1 85.0132321894 0.608590899205 5.87897375226e-09 chr10_+_80704417_80704435|85.0132321894|0.608590899205 1.21572396594161e-09 IN ENSMUST00000219987 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_80704698_80704713 ENSMUST00000219987.1 0 chr10:80704435+80705063 0 15 AACCACCCCAGCCTT 1 74.4769919694 1.22499998326 5.67175287403e-07 chr10_+_80704698_80704713|74.4769919694|1.22499998326 5.05302928610618e-07 IN ENSMUST00000219987 Annotated Alt5 Included I2 10 0.00512425089111822 0.00691365566356451 -0.00638312110813074 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_80827599_80827605 ENSMUST00000177850.7 2 chr10:80826905+80828242 2 6 GTTTAG 1 64.023270589 0.083599999547 0.00126472598046 chr10_+_80827599_80827605|64.023270589|0.083599999547 0.00126459036345683 IN ENSMUST00000177850 Novel NA Excluded E3 2 0.000430510822471298 0.00145089718009202 0.00465822226708446 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_81191041_81191068 ENSMUST00000218227.1 71 chr10:81190646+81191758 71 27 GAGCATTGGCGTCATCACCTACATCCT 1 80.3805071442 4.70629031271 0 chr10_+_81191041_81191068|80.3805071442|4.70629031271 0 IN ENSMUST00000218227 Annotated NA Included I2 10 -0.000806367722500271 -0.00272011564631129 0.00947860215888148 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_81580894_81580914 ENSMUST00000140433.7 0 chr10:81580667+81581644 0 20 TGGACAGAGCTGCCAGCAGG 1 81.1384720335 0.515249991266 8.6674845079e-10 chr10_+_81580894_81580914|81.1384720335|0.515249991266 3.26453752919065e-10 IN ENSMUST00000140433 Annotated Alt5 Included I2 10 0.00186082448736252 -0.0027471031070803 -0.00460075477270886 TRUE FALSE TRUE FALSE FALSE FALSE chr10_+_83737908_83737933 ENSMUST00000150459.2 0 chr10:83723034+83757444 0 25 GTCCAACAGGAGCAGTTAAAGACAC 1 84.6607144688 1.60886201789 3.05364622477e-11 chr10_+_83737908_83737933|84.6607144688|1.60886201789 6.59960974758178e-12 IN ENSMUST00000150459 Annotated NA Included I1 1 5.63118739734797e-48 -6.1998494833311e-48 -1.59921429232564e-47 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_90897246_90897256 ENSMUST00000182600.7 5 chr10:90895206+90897348 5 10 GAACCCAGTG 1 79.4630979029 4.34649994544 7.92738634803e-06 chr10_+_90897246_90897256|79.4630979029|4.34649994544 3.98972889348315e-06 IN ENSMUST00000182600 Novel Alt3 Excluded E2 3 0.00159444576702874 -0.0068915128190215 -0.0047203010301315 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_90940563_90940575 ENSMUST00000183156.7 0 chr10:90897426+90966224,chr10:90923602+90941425 0 12 GCTAACTGTCAG 1 78.7356200996 3.16274996218 0.0010608166239 chr10_+_90940563_90940575|78.7356200996|3.16274996218 0.000600662956065756 IN ENSMUST00000183156 Annotated NA Included I1 1 5.41512735028736e-06 4.21527791575281e-05 -0.000111644936160745 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE FALSE TRUE chr10_+_90967005_90967035 ENSMUST00000182053.7 4 chr10:90966392+90969803,chr10:90966392+90969806 1,3 30 GCTCCGCAGACATCCTGTCCCAACAGGCTG 1 79.6445702966 0.571911768632 0 chr10_+_90967005_90967035|79.6445702966|0.571911768632 0 IN ENSMUST00000182053 Novel NA Excluded E1 6 7.36324341011961e-05 -0.00125098508609798 -0.00200174044862379 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_90969634_90969662 ENSMUST00000183156.7 1 chr10:90966392+90969803 1 28 GCCCCTGCAGAGTCGCTGTGCAGTACAG 1 79.8471730375 -0.0683437464759 0 chr10_+_90969634_90969662|79.8471730375|-0.0683437464759 0 IN ENSMUST00000183156 Novel NA Excluded E2 3 -0.00661739150359932 0.0231172832759932 0.0137393504030889 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_93470799_93470823 ENSMUST00000016033.8 0 chr10:93469188+93471295 0 24 GCAGGTGACAAGTCACTCTCCAAC 1 88.6732016754 3.22032147353 7.38609173823e-12 chr10_+_93470799_93470823|88.6732016754|3.22032147353 1.15740750317173e-12 IN ENSMUST00000016033 Annotated NA Included I1 1 1.82122298537408e-118 3.40418088415027e-119 3.57327731863455e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_93490039_93490067 ENSMUST00000129421.7 0 chr10:93489934+93490746 0 28 ATACAGCAAATACCGGGAGCCTGAAAAA 1 78.1917208192 3.07278127037 0 chr10_+_93490039_93490067|78.1917208192|3.07278127037 0 IN ENSMUST00000129421 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_+_96000350_96000365 ENSMUST00000218291.1 132 chr10:95997092+96002886 132 15 ATGCTTAAATTTGAG 1 76.9121263783 2.12563156611 2.10093273889e-08 chr10_+_96000350_96000365|76.9121263783|2.12563156611 1.52689162424835e-08 IN ENSMUST00000218291 Missing in GENCODE NA Excluded E2 3 0.00564344535750341 0.00665297185228349 -0.0163204992070058 TRUE FALSE FALSE FALSE FALSE FALSE chr10_+_99164585_99164607 ENSMUST00000020113.14 97 chr10:99156351+99164868 97 22 GATATTTTCTGCATCTCTTGAG 1 74.2449379439 1.14096153098 1.88538074042e-12 chr10_+_99164585_99164607|74.2449379439|1.14096153098 1.70019553991096e-12 IN ENSMUST00000020113 Annotated NA Excluded E2 3 0.00716082620958133 0.00222208300903285 0.00921322783263212 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_105794361_105794391 ENSMUST00000046638.9 0 chr10:105793413-105797224 0 30 GCATTGCAGCGGGTTGCAGTTGGCCAAGGG 1 90.1859549966 2.35029414208 0 chr10_-_105794361_105794391|90.1859549966|2.35029414208 0 IN ENSMUST00000046638 Annotated NA Included I1 1 -3.97287149871093e-66 3.91364824588584e-66 9.346976718327e-66 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_107789182_107789206 ENSMUST00000165341.4 0 chr10:107789092-107789421 0 24 AATGGACATGCCCTTAAAAAACCA 1 82.9823019877 1.51417856437 1.06936681732e-12 chr10_-_107789182_107789206|82.9823019877|1.51417856437 2.94875235340442e-13 IN ENSMUST00000165341 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_107812901_107812928 ENSMUST00000165341.4 0 chr10:107808776-107813912 0 27 CCCTTGACTGTGAATATTATAATCAAG 1 87.0979895338 4.23419352188 0 chr10_-_107812901_107812928|87.0979895338|4.23419352188 0 IN ENSMUST00000165341 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_108978592_108978618 ENSMUST00000064054.13 69 chr10:108902315-108993837,chr10:108902315-109008891,chr10:108902315-109010575 49,19,1 26 ACAGAACTAGAACTTTTGTGTGTTGG 1 83.1709214105 -0.132666672518 0 chr10_-_108978592_108978618|83.1709214105|-0.132666672518 0 IN ENSMUST00000064054 Novel NA Excluded E1 6 1.00692097473427e-05 -1.35569101511942e-05 3.95033042306876e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_109684781_109684796 ENSMUST00000032719.14 29 chr10:109684239-109688785 29 15 TTACCCCCTCTGGAG 1 85.2464255963 0.840684210784 1.64691299487e-08 chr10_-_109684781_109684796|85.2464255963|0.840684210784 3.31271177156367e-09 IN ENSMUST00000032719 Novel NA Excluded E1 6 -2.38725275094203e-05 -2.23495741104105e-05 -0.00136230228289009 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_109719065_109719086 ENSMUST00000161582.7 35 chr10:109718366-109719956 35 21 GTGAACTCTAGAGGAAGTGAG 1 78.6231320747 4.10376003265 1.38999922683e-12 chr10_-_109719065_109719086|78.6231320747|4.10376003265 8.00914889964588e-13 IN ENSMUST00000161582 Annotated NA Excluded E1 6 3.04743852355323e-05 -0.00323695885158432 0.00581768887923483 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_109747193_109747217 ENSMUST00000032719.14 0 chr10:109742678-109751431 0 24 GCTGAAGAGAAGGCTCATTCAGAG 1 84.9075113999 4.56917856873 3.09974268475e-11 chr10_-_109747193_109747217|84.9075113999|4.56917856873 6.49358344873008e-12 IN ENSMUST00000032719 Annotated NA Included I1 1 4.3752741075516e-07 -2.18191491740888e-06 -1.02943689518827e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_111985777_111985804 ENSMUST00000074805.11 0 chr10:111985682-111986588 0 27 TTAACCCACGACGAGACCAGGTCTCAC 1 82.8267591541 1.3337741913 0 chr10_-_111985777_111985804|82.8267591541|1.3337741913 0 IN ENSMUST00000074805 Annotated Alt3 Included I2 10 0.00251903925548427 0.0117632204113134 -0.00220794690516948 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_115357083_115357106 ENSMUST00000218731.1 1 chr10:115347783-115359653 1 23 CACATTTTTAGGAAGAGCCCAAA 1 72.6060930737 1.18870370863 0 chr10_-_115357083_115357106|72.6060930737|1.18870370863 0 IN ENSMUST00000218731 Novel NA Excluded E1 6 1.18580382922664e-05 -0.000431916161869793 -0.000406170712777007 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_116517358_116517383 ENSMUST00000105265.7 1 chr10:116507188-116549032 1 25 ATGCTGGCATCGCCATCTACGTCAG 1 82.6899297979 4.21668966269 0 chr10_-_116517358_116517383|82.6899297979|4.21668966269 0 IN ENSMUST00000105265 Novel Alt3 Excluded E1 6 -0.000302860301273751 -0.000377104689394297 -0.00220034455580294 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_117099942_117099967 ENSMUST00000020381.4 0 chr10:117085123-117100625 0 25 ACTTTTTGAAGGAAGACATCATCGA 1 79.4243934598 0.348620693039 1.3742784688e-11 chr10_-_117099942_117099967|79.4243934598|0.348620693039 6.96132040900466e-12 IN ENSMUST00000020381 Annotated NA Included I1 1 -6.22558064704671e-116 -7.79419966659709e-117 -1.00134115702316e-115 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_120825107_120825136 ENSMUST00000130950.1 36 chr10:120791499-120871034 36 29 GTCAGAAACCAAATTTGACTCTGGTTCAG 1 91.7268130606 3.66948488987 0 chr10_-_120825107_120825136|91.7268130606|3.66948488987 0 IN ENSMUST00000130950 Annotated NA Included I2 10 0.00168808690212713 0.00180403653752423 0.00123754814970946 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_121831884_121831912 ENSMUST00000020322.11 0 chr10:121829329-121840029,chr10:121828762-121840029 0 28 GCCATAGAGCTGAATATATGACTACAAG 1 88.3804151651 3.92118748248 0 chr10_-_121831884_121831912|88.3804151651|3.92118748248 0 IN ENSMUST00000020322 Annotated NA Included I1 1 -2.05160835250912e-06 1.3571113963463e-05 4.82905374041e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_123009912_123009930 ENSMUST00000037557.8 1037 chr10:123009631-123010493 1037 18 ATCCAACTATTTGCACCG 1 72.9618217784 5.66590910608 4.77484718431e-11 chr10_-_123009912_123009930|72.9618217784|5.66590910608 4.5250914126882e-11 IN ENSMUST00000037557 Annotated NA Neuronal N1 18 0.0626623938611832 0.0285850776045264 0.0164169885473514 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr10_-_123023085_123023088 ENSMUST00000037557.8 593 chr10:123022944-123023909 593 3 AAG 1 86.6648519427 3.14771430833 0.0567967312547 chr10_-_123023085_123023088|86.6648519427|3.14771430833 0.00992830676121015 IN ENSMUST00000037557 Annotated NA Neuronal N1 18 0.0646713892115327 0.0316330513636562 0.0053585873312061 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr10_-_12385517_12385540 ENSMUST00000076817.4 0 chr10:12384196-12401310 0 23 CAAATGTCCCCAGCAGGCCACAG 1 91.4967270577 2.42066668195 2.42820874519e-10 chr10_-_12385517_12385540|91.4967270577|2.42066668195 3.93838295309479e-11 IN ENSMUST00000076817 Annotated NA Included I1 1 -1.21936538089576e-45 3.97902696917359e-46 1.30180337121799e-45 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_127230148_127230176 ENSMUST00000099172.4 0 chr10:127229856-127230568 0 28 GAAATGCCACAGATATCAACGACAACAG 1 80.2079771687 4.02578133531 0 chr10_-_127230148_127230176|80.2079771687|4.02578133531 0 IN ENSMUST00000099172 Annotated NA Included I1 1 1.03137268235392e-10 -6.96308512629927e-10 -3.0373605792461e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_127296716_127296736 ENSMUST00000037290.11 18 chr10:127296633-127296872 18 20 AAGAGTCCTTGGAGTTAAAG 1 77.2070880714 1.39775001506 7.63833440942e-13 chr10_-_127296716_127296736|77.2070880714|1.39775001506 5.36015676289026e-13 IN ENSMUST00000037290 Novel NA Excluded E2 3 0.00976459514366632 -0.00527168487815304 0.0246349442220728 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_127296716_127296740 ENSMUST00000037290.11 618 chr10:127296633-127296872 618 24 CTAGAAGAGTCCTTGGAGTTAAAG 1 81.6826475275 1.46192858262 0 chr10_-_127296716_127296740|81.6826475275|1.46192858262 0 IN ENSMUST00000037290 Annotated NA Neuro-Muscular NM4 16 0.0420927150240909 -0.0274362610219151 0.0595927544842679 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_128491289_128491304 ENSMUST00000164181.1 4 chr10:128491033-128491719,chr10:128491033-128492058 2,2 15 TGGCTGACCATAACT 1 75.7150507769 1.51589475807 2.42653186433e-09 chr10_-_128491289_128491304|75.7150507769|1.51589475807 1.98577698728997e-09 IN ENSMUST00000164181 Novel Alt5 Excluded E1 6 -5.70057281026125e-05 2.90231103071955e-05 0.00133692513458651 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_128493333_128493353 ENSMUST00000219554.1 262 chr10:128492745-128493538 262 20 ATCTGAGCCCCAAGCGCTGG 1 82.3741484979 1.59675001508 2.732036819e-12 chr10_-_128493333_128493353|82.3741484979|1.59675001508 8.32001134654092e-13 IN ENSMUST00000219554 Annotated NA Excluded E3 2 -0.00149475074646936 -0.0583391492861598 0.000840792545633365 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_128493538_128493566 ENSMUST00000164181.1 0 chr10:128492709-128493808,chr10:128493045-128493808,chr10:128492402-128493999,chr10:128492745-128493808,chr10:128493353-128493999,chr10:128492535-128493808 0 28 TGTGACTTCACCGAGGACCAGACCGCAG 1 80.6039985453 2.37000001129 0 chr10_-_128493538_128493566|80.6039985453|2.37000001129 0 IN ENSMUST00000164181 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_128496613_128496641 ENSMUST00000026428.3 0 chr10:128496396-128497200 0 28 ATCGAGTTTAACAAGGACCAGCTGGAGG 1 84.3475226722 2.84987495444 0 chr10_-_128496613_128496641|84.3475226722|2.84987495444 0 IN ENSMUST00000026428 Annotated NA Included I1 1 1.46909982633997e-06 -7.06701788664283e-06 -3.57639702733573e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_128548657_128548680 ENSMUST00000177163.7 0 chr10:128548429-128548948,chr10:128548451-128548948 0 23 TGGCGGAAGAAGAGAATGCGCAG 1 80.4868839412 2.61788890814 6.67910171614e-12 chr10_-_128548657_128548680|80.4868839412|2.61788890814 2.81985546024544e-12 IN ENSMUST00000177163 Annotated Alt5 Included I2 10 -0.0035910917316919 -0.00347458769759017 -0.00816091566540041 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_128548948_128548971 ENSMUST00000176683.7 0 chr10:128548680-128549087 0 23 ACTCCTGCGCCATGAGAGCGAAG 1 85.1724693811 1.61862963783 5.40012479178e-12 chr10_-_128548948_128548971|85.1724693811|1.61862963783 1.09567910300257e-12 IN ENSMUST00000176683 Annotated Alt3 Excluded E1 6 2.24303649934277e-05 4.68655604666623e-05 7.16423751561108e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_13255309_13255321 ENSMUST00000105543.8 777 chr10:13253879-13257576,chr10:13253879-13261765 232,545 12 CTGCATCCAGAG 1 80.5097751507 0.459687492112 8.57049232139e-07 chr10_-_13255309_13255321|80.5097751507|0.459687492112 3.6039434914148e-07 IN ENSMUST00000105543 Annotated NA Other O1 4 0.0133020309352791 -0.0432548495595212 -0.00977089895094351 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_18216259_18216282 ENSMUST00000080860.12 0 chr10:18214178-18219487 0 23 TTAGAAGAATTGAATTCTTCTAT 1 75.0020051387 3.97885188046 7.50617346057e-11 chr10_-_18216259_18216282|75.0020051387|3.97885188046 6.47891740257478e-11 IN ENSMUST00000080860 Annotated Alt3 Included I2 10 0.000137842992100471 -0.00375462461280404 0.00294638247400988 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_23786624_23786642 ENSMUST00000218107.1 2 chr10:23786004-23786763 2 18 CAGGAAACCTAGGAAAAG 1 72.7939529089 1.29909089072 4.18935997004e-11 chr10_-_23786624_23786642|72.7939529089|1.29909089072 3.98874266949178e-11 IN ENSMUST00000218107 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_27021460_27021472 ENSMUST00000219763.1 187 chr10:27018527-27023271 187 12 TATGAAAGCAAG 1 78.2212411572 3.35224999115 1.10082267746e-06 chr10_-_27021460_27021472|78.2212411572|3.35224999115 6.73813323803785e-07 IN ENSMUST00000219763 Annotated NA Excluded E4 11 -0.00684878684844638 -0.0443346427740855 0.0472288525108586 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_27053027_27053033 ENSMUST00000219763.1 352 chr10:27050352-27054502 352 6 AAATCA 1 70.7544600829 3.88130007982 0.00394042960505 chr10_-_27053027_27053033|70.7544600829|3.88130007982 0.0038818344294953 IN ENSMUST00000219763 Annotated NA Included I3 5 -0.0192672273400616 -0.0132570983695376 0.0318789602049079 TRUE TRUE FALSE FALSE FALSE FALSE chr10_-_30567862_30567868 ENSMUST00000019927.6 12 chr10:30566506-30587438 12 6 TGTTCT 1 77.7103494127 0.994500013068 0.0197550441108 chr10_-_30567862_30567868|77.7103494127|0.994500013068 0.0129934354017591 IN ENSMUST00000019927 Novel NA Excluded E1 6 -0.000268449853251712 0.000121694910892022 -0.001139009972322 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_31343011_31343026 ENSMUST00000000305.6 1736 chr10:31332969-31346610,chr10:31338245-31346610,chr10:31341178-31346610 386,55,1295 15 GTCTCACTCTTTTGG 1 80.0355162467 1.95094734278 1.96923790607e-08 chr10_-_31343011_31343026|80.0355162467|1.95094734278 8.99213770111373e-09 IN ENSMUST00000000305 Annotated NA Neuronal N3 17 0.06177858394434 0.0162131194077356 0.0668435647314843 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr10_-_39681472_39681484 ENSMUST00000145971.1 1 chr10:39645808-39731737 1 12 TGGGAACCCTTC 1 66.7398322202 0.199437499046 2.00029790283e-05 chr10_-_39681472_39681484|66.7398322202|0.199437499046 1.99840850889643e-05 IN ENSMUST00000145971 Novel Alt5 Excluded E1 6 0.000464028883980641 -1.07104363717542e-06 -0.00201597638405724 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_42414996_42415018 ENSMUST00000151747.7 18 chr10:42400399-42415548 18 22 CTCATCATGTGGTCAGTTAAAG 1 90.2208960282 0.344346156702 3.35798056028e-12 chr10_-_42414996_42415018|90.2208960282|0.344346156702 5.21693799271361e-13 IN ENSMUST00000151747 Novel NA Excluded E1 6 0.000562650033461326 -0.000110317209864144 -0.00115571989654352 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_43897415_43897443 ENSMUST00000020012.6 20 chr10:43896168-43901613 20 28 ACCCCCTGCCCCCAGGATCACATAGCAG 1 84.3054000847 -0.230437503087 0 chr10_-_43897415_43897443|84.3054000847|-0.230437503087 0 IN ENSMUST00000020012 Novel NA Excluded E1 6 -4.98393017512055e-05 -0.000733124300755588 0.0012824140353605 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_4431627_4431646 ENSMUST00000042251.10 14 chr10:4429171-4432265 14 19 AGCTAGCATACTGCACACG 1 84.1178855165 0.0709565245425 4.36415348304e-11 chr10_-_4431627_4431646|84.1178855165|0.0709565245425 1.01471053781665e-11 IN ENSMUST00000042251 Novel NA Excluded E1 6 0.000247985850317911 7.15340845316148e-05 1.8221585979454e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_52178946_52178973 ENSMUST00000219173.1 0 chr10:52172901-52180161 0 27 AATGACACCTACGCCACCATTTGTGAG 1 88.7793713121 1.48945160595 0 chr10_-_52178946_52178973|88.7793713121|1.48945160595 0 IN ENSMUST00000219173 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_52357341_52357365 ENSMUST00000020008.9 546 chr10:52354747-52358772 546 24 TCTGTCCACTCTGTGGAGGATCTG 1 82.1960251952 3.84975001376 0 chr10_-_52357341_52357365|82.1960251952|3.84975001376 0 IN ENSMUST00000020008 Annotated NA Neuronal N2 8 0.0760137835205153 -0.0163877925056543 -0.000228777211822616 TRUE TRUE TRUE 11.5 1 12.5 1 TRUE TRUE FALSE chr10_-_5426254_5426275 ENSMUST00000214945.1 73 chr10:5425760-5436738 73 21 TCCATGTACAGAGGATCACCG 1 81.1073634668 3.64219998837 9.72821823098e-12 chr10_-_5426254_5426275|81.1073634668|3.64219998837 3.68405306261366e-12 IN ENSMUST00000214945 Annotated NA Neuro-Muscular NM1 12 0.0430343213174011 -0.141385758011271 -0.0487158738301352 TRUE TRUE TRUE FALSE FALSE FALSE chr10_-_56223735_56223754 ENSMUST00000099739.4 1 chr10:56215118-56224563 1 19 AACTCTCTCTCTGGGGCTG 1 85.772957941 None 1.33894673127e-10 chr10_-_56223735_56223754|85.772957941|None 2.54186671710954e-11 IN ENSMUST00000099739 Novel NA Excluded E2 3 -0.00268745437194845 -0.00469069761452526 0.00158675841104966 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_57523960_57523987 ENSMUST00000169122.7 0 chr10:57523216-57524319 0 27 AAGGGAACTCAAGATGTTGGTATGCAG 1 71.2873453423 4.21519361082 0 chr10_-_57523960_57523987|71.2873453423|4.21519361082 0 IN ENSMUST00000169122 Annotated Alt5 Excluded E1 6 -6.39125271795741e-08 3.62211716010606e-05 -5.20021453006024e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_57529069_57529075 ENSMUST00000020027.10 139 chr10:57527826-57532356 139 6 CAAAAG 1 83.4699917823 0.300899999216 0.0043013326216 chr10_-_57529069_57529075|83.4699917823|0.300899999216 0.00109938590879732 IN ENSMUST00000020027 Novel NA Excluded E1 6 4.25078902726472e-06 -1.64901024955512e-06 2.15570423854003e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_5905118_5905127 ENSMUST00000064225.13 1 chr10:5862662-5918183 1 9 GGAAACAAT 1 74.7902182927 -0.109000002965 0.000826791680958 chr10_-_5905118_5905127|74.7902182927|-0.109000002965 0.00072334378278438 IN ENSMUST00000064225 Novel NA Excluded E1 6 3.90356213252559e-05 -0.000185288822877908 -8.11767390473348e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_5913708_5913738 ENSMUST00000064225.13 38 chr10:5862662-5915792,chr10:5862662-5918183 31,7 30 AGCTTGAACCCAGGCTACCAGGTTTATGAG 1 83.4442693825 0.125088232268 0 chr10_-_5913708_5913738|83.4442693825|0.125088232268 0 IN ENSMUST00000064225 Novel NA Excluded E2 3 -0.00301443982789334 -0.0092300534090137 0.0182836250009125 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_60468034_60468040 ENSMUST00000105464.8 53 chr10:60466152-60486989 53 6 AACTTG 1 77.724298204 1.61940002143 0.0196662307737 chr10_-_60468034_60468040|77.724298204|1.61940002143 0.0129106753704501 IN ENSMUST00000105464 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_61856781_61856808 ENSMUST00000145469.7 0 chr10:61856418-61857587 0 27 GGCCTCCAAGGTTTTCCTGGACCAAAG 1 79.6998475611 2.76338711705 0 chr10_-_61856781_61856808|79.6998475611|2.76338711705 0 IN ENSMUST00000145469 Annotated NA Included I1 1 -2.86080044437749e-13 7.90839559111694e-13 -3.83152956672707e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_61866390_61866414 ENSMUST00000105451.7 0 chr10:61864003-61867451 0 24 GAGATCAGGACGCTGGCCTTGATG 1 86.1392172926 2.21610713431 1.21502807815e-11 chr10_-_61866390_61866414|86.1392172926|2.21610713431 2.22444285213896e-12 IN ENSMUST00000105451 Annotated NA Included I1 1 3.6011664546595e-15 4.17267714247306e-14 -1.17501743301257e-13 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_61873993_61874020 ENSMUST00000105451.7 0 chr10:61871334-61874737 0 27 GGTGAGCCAGGGACGCCAGGAACCAAG 1 80.5402622366 2.2280322669 0 chr10_-_61873993_61874020|80.5402622366|2.2280322669 0 IN ENSMUST00000105451 Annotated NA Included I1 1 -6.81166856353531e-09 6.81265413030105e-09 -4.70680910900309e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_61885687_61885714 ENSMUST00000105452.8 0 chr10:61884711-61887248 0 27 GGTTTACCGGGGCCTCCTGGACCAAAG 1 88.821217686 3.04083867503 0 chr10_-_61885687_61885714|88.821217686|3.04083867503 0 IN ENSMUST00000105452 Annotated NA Included I1 1 -4.45588480188879e-11 1.61337310058369e-10 -7.09992390661418e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_61892955_61892982 ENSMUST00000105452.8 0 chr10:61891264-61893914,chr10:61887356-61893914 0 27 GGTCAGTGTGGAGAGTACCCACACAGG 1 84.6299856959 2.9605484439 0 chr10_-_61892955_61892982|84.6299856959|2.9605484439 0 IN ENSMUST00000105452 Annotated NA Included I1 1 3.47622944129558e-06 -2.39311553137534e-06 1.91759168240127e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_61893914_61893941 ENSMUST00000105452.8 0 chr10:61892982-61894033 0 27 GGACCTCAGGGACAAAAGGGAGAAAAG 1 90.923583653 2.66209675227 0 chr10_-_61893914_61893941|90.923583653|2.66209675227 0 IN ENSMUST00000105452 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_61894033_61894060 ENSMUST00000105452.8 0 chr10:61893941-61895333 0 27 GGCCTGGTGGGTCCTCGAGGACAACCG 1 83.5985347278 1.52729032441 0 chr10_-_61894033_61894060|83.5985347278|1.52729032441 0 IN ENSMUST00000105452 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_61895333_61895360 ENSMUST00000105452.8 0 chr10:61894060-61896345 0 27 GGCCACCCCGGACCTAAAGGGGAGATG 1 88.850496337 1.92051612603 0 chr10_-_61895333_61895360|88.850496337|1.92051612603 0 IN ENSMUST00000105452 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_61896345_61896372 ENSMUST00000105452.8 0 chr10:61895360-61897138 0 27 GGTCCCATTGGTCTTGACGGCAGGCCG 1 91.2134008662 1.90767743511 0 chr10_-_61896345_61896372|91.2134008662|1.90767743511 0 IN ENSMUST00000105452 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_61905253_61905280 ENSMUST00000105452.8 62 chr10:61903140-61908681 62 27 GGTATCAAAGGTCAACCAGGCGAGAAG 1 83.5335554575 1.7221612887 0 chr10_-_61905253_61905280|83.5335554575|1.7221612887 0 IN ENSMUST00000105452 Annotated NA Other O2 21 0.00258755436869502 -0.012424765582245 -0.0130351403861346 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_61911706_61911733 ENSMUST00000105452.8 0 chr10:61908717-61920088 0 27 GGTCCCACTGGAAGACCTGGACTCCCA 1 87.393054807 1.85700000312 0 chr10_-_61911706_61911733|87.393054807|1.85700000312 0 IN ENSMUST00000105452 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_61920088_61920096 ENSMUST00000105452.8 0 chr10:61911733-61961288 0 8 GACCTCCT 1 85.836659723 2.55283330878 0.530424327127 chr10_-_61920088_61920096|85.836659723|2.55283330878 0.1000387605691 RESCUED ENSMUST00000105452 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_62786979_62786992 ENSMUST00000020268.6 185 chr10:62785594-62790920 185 13 GCTGGGACTCTAG 1 83.5135990184 0.0424705831444 3.0902442405e-07 chr10_-_62786979_62786992|83.5135990184|0.0424705831444 7.84643002793572e-08 IN ENSMUST00000020268 Novel NA Excluded E1 6 0.000619510610724458 0.000265373810296728 -7.55466450161641e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_63150022_63150046 ENSMUST00000095580.2 0 chr10:63147993-63152794 0 24 AACCTCGATCCATGGCAGAACCAG 1 86.9180017887 3.36892863469 1.69571023889e-11 chr10_-_63150022_63150046|86.9180017887|3.36892863469 2.90623081156127e-12 IN ENSMUST00000095580 Annotated NA Included I1 1 -2.68002903269808e-06 4.60720937777779e-07 2.50376911204003e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_75775489_75775497 ENSMUST00000001715.9 138 chr10:75775010-75775870 138 8 GACAATGG 1 82.9659708533 -0.0780833351115 5.0543462912e-05 chr10_-_75775489_75775497|82.9659708533|-0.0780833351115 1.39737869034873e-05 IN ENSMUST00000001715 Annotated NA Excluded E2 3 0.00771483100276977 -0.00215312080824656 0.00978894214363868 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_75919987_75919990 ENSMUST00000000925.9 1 chr10:75916911-75921302 1 3 GTG 1 70.4463782395 None 0.234775704325 chr10_-_75919987_75919990|70.4463782395|None 0.231891896618271 RESCUED ENSMUST00000000925 Novel NA Excluded E1 6 -8.00932558541419e-05 -0.000290200218434712 -0.000455674426866161 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_75940393_75940420 ENSMUST00000059658.5 0 chr10:75940017-75940563 0 27 GGATGTTTATCACTGTGATGTTTGGAG 1 88.9800060304 1.68535482944 0 chr10_-_75940393_75940420|88.9800060304|1.68535482944 0 IN ENSMUST00000059658 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_76271375_76271397 ENSMUST00000160048.7 5 chr10:76270457-76272532 5 22 GCTGGGAAAACTAGCTGAGCAG 1 78.4818142461 4.6363076751 4.54969395491e-13 chr10_-_76271375_76271397|78.4818142461|4.6363076751 2.6789681584205e-13 IN ENSMUST00000160048 Novel NA Neuronal N6 15 0.0130112179323374 0.00635260289803316 0.000958104125944812 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr10_-_76271375_76271405 ENSMUST00000160048.7 256 chr10:76270457-76272532 256 30 CCCAACAGGCTGGGAAAACTAGCTGAGCAG 1 77.8344729392 4.67938232071 0 chr10_-_76271375_76271405|77.8344729392|4.67938232071 0 IN ENSMUST00000160048 Annotated NA Neuronal N1 18 0.062223099651504 0.0135128678499279 -0.0471842911540875 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr10_-_76403623_76403644 ENSMUST00000220395.1 0 chr10:76401535-76403757 0 21 TGCGTCCAGTTAGACGAGGAG 1 72.2751200209 0.172159994766 4.99539964949e-10 chr10_-_76403623_76403644|72.2751200209|0.172159994766 4.81477080427339e-10 IN ENSMUST00000220395 Annotated NA Included I1 1 1.79693668141483e-23 1.10427215380382e-23 -9.41453231781204e-27 TRUE TRUE TRUE 13.5 -1 FALSE FALSE FALSE chr10_-_76406691_76406706 ENSMUST00000220395.1 1 chr10:76404651-76408697 1 15 CACACAAGGACACAG 1 80.0833012149 0.950947391016 1.46501405451e-08 chr10_-_76406691_76406706|80.0833012149|0.950947391016 6.6347541904932e-09 IN ENSMUST00000220395 Novel NA Excluded E2 3 -0.000587488782543238 -0.00812567699245184 0.0057715415284252 TRUE FALSE FALSE TRUE FALSE FALSE chr10_-_76611162_76611189 ENSMUST00000001181.12 0 chr10:76611073-76611415 0 27 GGTGAATTTGGATCGGATGGTCGGAAG 1 87.6654015044 2.78948387263 0 chr10_-_76611162_76611189|87.6654015044|2.78948387263 0 IN ENSMUST00000001181 Annotated NA Included I1 1 1.98778647580288e-45 -2.55058659924201e-45 1.31268265021854e-44 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_76611415_76611442 ENSMUST00000001181.12 0 chr10:76611189-76611791 0 27 GGTGTGCCTGGCTTCAAGGGAGAGAAG 1 88.5361996856 3.0644192835 0 chr10_-_76611415_76611442|88.5361996856|3.0644192835 0 IN ENSMUST00000001181 Annotated NA Included I1 1 -3.17536284882977e-51 2.69157815434366e-52 7.70848632334916e-53 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_76614108_76614129 ENSMUST00000001181.12 0 chr10:76613320-76614336 0 21 AAACATGAAGCCTATGGAGAG 1 88.8630985866 2.61055998623 2.25327312364e-10 chr10_-_76614108_76614129|88.8630985866|2.61055998623 3.51447759783241e-11 IN ENSMUST00000001181 Annotated NA Included I1 1 -1.89308954714852e-76 -2.35458180130513e-77 -7.748623764409e-77 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_76710345_76710375 ENSMUST00000001147.4 0 chr10:76710181-76710961 0 30 ATAAGAAGTGTCCGGATTATACCTGTCCAA 1 90.8549100246 3.56902941755 0 chr10_-_76710345_76710375|90.8549100246|3.56902941755 0 IN ENSMUST00000001147 Annotated NA Included I1 1 -5.63021185838799e-79 -1.28784125874197e-79 -7.96956820502089e-79 TRUE FALSE TRUE FALSE FALSE FALSE chr10_-_76712864_76712873 ENSMUST00000001147.4 0 chr10:76712401-76713184 0 9 CCTGCTGTG 1 83.2401819931 2.09238463526 0.00293296809808 chr10_-_76712864_76712873|83.2401819931|2.09238463526 0.000776589336380917 IN ENSMUST00000001147 Annotated NA Included I1 1 1.71984561329977e-60 -1.20836526720109e-60 6.26319208939066e-60 TRUE FALSE TRUE FALSE FALSE FALSE chr10_-_76718516_76718543 ENSMUST00000001147.4 0 chr10:76718417-76718978 0 27 GGTTCCAGAGGACCGAAAGGTTACAAG 1 89.1229120878 2.491483918 0 chr10_-_76718516_76718543|89.1229120878|2.491483918 0 IN ENSMUST00000001147 Annotated NA Included I1 1 5.11156399900303e-54 -4.81298191891616e-54 3.14639583123033e-53 TRUE FALSE TRUE FALSE FALSE FALSE chr10_-_76718978_76719005 ENSMUST00000001147.4 0 chr10:76718543-76719124 0 27 GGAGAAAAGGGGAGCCGTGGAGAGAAG 1 87.4327950515 2.72196766746 0 chr10_-_76718978_76719005|87.4327950515|2.72196766746 0 IN ENSMUST00000001147 Annotated NA Included I1 1 2.01474750461186e-39 2.14714668877659e-39 -2.48080321629977e-39 TRUE FALSE TRUE FALSE FALSE FALSE chr10_-_76721087_76721108 ENSMUST00000001147.4 0 chr10:76721005-76721262 0 21 TGTTGTTCTTTTGAGTGCCAG 1 90.9767202614 3.12268000722 5.27506927028e-11 chr10_-_76721087_76721108|90.9767202614|3.12268000722 8.36175573226683e-12 IN ENSMUST00000001147 Annotated NA Included I1 1 -1.1524190654138e-49 3.80586181891104e-50 -2.4764522003127e-49 TRUE FALSE TRUE FALSE FALSE FALSE chr10_-_76721262_76721283 ENSMUST00000001147.4 0 chr10:76721108-76721402 0 21 AAAAATAACGTGGAACAAGTG 1 87.0981276406 1.99984002292 6.11635186942e-11 chr10_-_76721262_76721283|87.0981276406|1.99984002292 1.03472785895065e-11 IN ENSMUST00000001147 Annotated NA Included I1 1 -2.41858681501164e-56 8.18076130858391e-57 -4.37778192103733e-56 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_76799528_76799552 ENSMUST00000001148.10 0 chr10:76798659-76800759 0 24 GAAGTTGGAAGCATCATCGGGAAG 1 91.9908733473 4.64642860261 7.36122274247e-12 chr10_-_76799528_76799552|91.9908733473|4.64642860261 1.2285727990502e-12 IN ENSMUST00000001148 Annotated NA Included I1 1 -9.37417816173202e-41 9.35376041338711e-40 4.21375847429321e-40 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_77067631_77067658 ENSMUST00000081654.12 0 chr10:77067432-77068389 0 27 GGAGAGCCAGGCTTTCGAGGACCCCCG 1 83.8445720713 1.67664516321 0 chr10_-_77067631_77067658|83.8445720713|1.67664516321 0 IN ENSMUST00000081654 Annotated NA Included I1 1 -1.28506654435264e-81 -5.774571719538e-82 -1.0743895464317e-81 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_77069819_77069846 ENSMUST00000081654.12 0 chr10:77069498-77069949 0 27 GGCAAGCCAGGGTACGCAGGCTTTCCT 1 84.343724734 0.899516102768 0 chr10_-_77069819_77069846|84.343724734|0.899516102768 0 IN ENSMUST00000081654 Annotated NA Included I1 1 1.00250891347927e-54 -2.67935343021747e-56 4.08137579374901e-54 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_77069949_77069979 ENSMUST00000081654.12 0 chr10:77069846-77070960 0 30 AAAGCAATAGTGAGCACGCCAGGACCTGAG 1 75.431897219 0.111470597029 0 chr10_-_77069949_77069979|75.431897219|0.111470597029 0 IN ENSMUST00000081654 Annotated NA Included I1 1 1.55331941629933e-63 3.37885093205099e-65 5.78022940794832e-63 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_77072941_77072968 ENSMUST00000081654.12 0 chr10:77072062-77073739 0 27 GGACCTCCCGGGTCGCCGGGACTCAAG 1 84.7781398134 0.936096783127 0 chr10_-_77072941_77072968|84.7781398134|0.936096783127 0 IN ENSMUST00000081654 Annotated NA Included I1 1 -1.04197899902333e-56 9.0649774141953e-58 -4.5807481287922e-56 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_77076147_77076174 ENSMUST00000081654.12 0 chr10:77074481-77077158 0 27 GGTGATGTGGGCATCCCAGGACCCAAG 1 86.1692555313 0.767967748786 0 chr10_-_77076147_77076174|86.1692555313|0.767967748786 0 IN ENSMUST00000081654 Annotated NA Included I1 1 -4.58695052393864e-87 -2.3475965664143e-87 -3.63241207487893e-87 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_77079260_77079287 ENSMUST00000081654.12 0 chr10:77078519-77080678 0 27 GGTGACCCTGGTGAAGATGGGAGACCG 1 81.281723358 1.73741935722 0 chr10_-_77079260_77079287|81.281723358|1.73741935722 0 IN ENSMUST00000081654 Annotated NA Included I1 1 -1.55438083314063e-80 -1.11162282541046e-81 -5.20048847120848e-80 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_78351626_78351647 ENSMUST00000146899.1 0 chr10:78329336-78352212,chr10:78329336-78352089 0 21 CCCCGGAGCAGTTGACCCCAG 1 69.0779120441 -0.0605599957705 5.16774889547e-09 chr10_-_78351626_78351647|69.0779120441|-0.0605599957705 5.14171272225639e-09 IN ENSMUST00000146899 Annotated Alt5 Excluded E2 3 -0.000183671467018898 -0.000240464417076145 0.00747984235175526 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_78402424_78402444 ENSMUST00000219374.1 0 chr10:78401966-78402609 0 20 GCTGCGGGAGCTGGCTGGAG 1 89.0134969402 1.3325000025 5.62977220397e-10 chr10_-_78402424_78402444|89.0134969402|1.3325000025 8.75489680751684e-11 IN ENSMUST00000219374 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_79068717_79068728 ENSMUST00000218854.1 0 chr10:79068051-79088286 0 11 ATGTCCATAAG 1 85.4601114115 -0.0534666708981 0.00480921814599 chr10_-_79068717_79068728|85.4601114115|-0.0534666708981 0.00094416699028621 IN ENSMUST00000218854 Annotated Alt3 Excluded E3 2 0.000181625781609239 0.00342299843553592 -0.0167944240483268 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_79907490_79907511 ENSMUST00000164705.7 0 chr10:79907146-79908817 0 21 ACCTACGCAATGATGACCAGG 1 81.1528006186 1.82683998823 3.7425706978e-10 chr10_-_79907490_79907511|81.1528006186|1.82683998823 1.40607747667332e-10 IN ENSMUST00000164705 Annotated Alt5 Excluded E2 3 0.000394262252184014 6.15546947277331e-05 0.000388108535754615 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_79908338_79908341 ENSMUST00000105378.8 7 chr10:79907653-79908817 7 3 GTG 1 63.6806275078 -0.546857144151 0.0681839275693 chr10_-_79908338_79908341|63.6806275078|-0.546857144151 0.0681784666380915 IN ENSMUST00000105378 Novel NA Included I3 5 -0.00301283535244704 0.00712302197537874 -0.00170140550240154 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_80406241_80406248 ENSMUST00000020372.5 26 chr10:80404286-80406695 26 7 TATCCAG 1 75.8779132733 -0.242818184874 0.000571564415633 chr10_-_80406241_80406248|75.8779132733|-0.242818184874 0.000461267196446236 IN ENSMUST00000020372 Novel NA Excluded E1 6 -1.44332328867941e-05 3.65820033570439e-05 -5.76635553182956e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_80796590_80796618 ENSMUST00000219959.1 0 chr10:80796522-80796731 0 28 GAATGAGATCAGGAAGATGACTGGCAAG 1 87.2820514308 2.43965629209 0 chr10_-_80796590_80796618|87.2820514308|2.43965629209 0 IN ENSMUST00000219959 Annotated Alt5 Excluded E4 11 0.00482015262370646 -0.00148541585717339 0.0168509518561037 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_80854888_80854891 ENSMUST00000218119.1 4 chr10:80854708-80854939,chr10:80854708-80855013 3,1 3 GAC 1 61.8742245085 -0.310428564038 0.0135792509737 chr10_-_80854888_80854891|61.8742245085|-0.310428564038 0.0135790319669669 IN ENSMUST00000218119 Novel NA Excluded E2 3 0.00184438112905524 0.00282031542216948 -0.0070545221953996 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_88097873_88097876 ENSMUST00000048518.15 1 chr10:88093727-88110298 1 3 AAG 1 66.815514771 None 0.636151309147 chr10_-_88097873_88097876|66.815514771|None 0.635515123510766 RESCUED ENSMUST00000048518 Novel NA Excluded E3 2 0.00140393007870381 0.00199702067721691 -0.000764713544501536 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_88481352_88481379 ENSMUST00000117440.7 294 chr10:88480946-88482230 294 27 TTGTCTTGAACAACAGTTGACCAACAG 1 77.2561160012 2.13329029227 0 chr10_-_88481352_88481379|77.2561160012|2.13329029227 0 IN ENSMUST00000117440 Annotated NA Neuronal N6 15 0.0224241871800133 0.0101762314825732 0.00548064057396644 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr10_-_88519933_88519943 ENSMUST00000124144.1 17 chr10:88518569-88522966 17 10 TCGTAGCACA 1 78.8016696979 3.73057142432 1.63278141083e-05 chr10_-_88519933_88519943|78.8016696979|3.73057142432 9.14996835865711e-06 IN ENSMUST00000124144 Novel Alt3 Excluded E2 3 -0.000578879333097301 0.00432362160698825 -0.00483784570729115 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_88536645_88536666 ENSMUST00000121629.7 10 chr10:88536482-88540948 10 21 CCATTTGGGGACATTTTTCAG 1 74.2951743086 0.510559997037 3.94440036189e-12 chr10_-_88536645_88536666|74.2951743086|0.510559997037 3.54793971979461e-12 IN ENSMUST00000121629 Novel NA Excluded E1 6 0.000253187193039377 0.000268843766152185 -0.00129967126335582 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_88539117_88539126 ENSMUST00000156573.1 22 chr10:88537519-88540948 22 9 GTTTAAAAC 1 85.0085710834 2.83130772756 5.0901071514e-05 chr10_-_88539117_88539126|85.0085710834|2.83130772756 1.0531884755749e-05 IN ENSMUST00000156573 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr10_-_89654334_89654346 ENSMUST00000174252.7 306 chr10:89654226-89656707 306 12 GCTAGCAACATG 1 84.4021784559 5.31474998593 5.73927371961e-07 chr10_-_89654334_89654346|84.4021784559|5.31474998593 1.28336523741446e-07 IN ENSMUST00000174252 Missing in GENCODE NA Neuronal N1 18 0.0721591469041876 0.0335332166564918 0.0206487207576156 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr10_-_91122037_91122043 ENSMUST00000170810.7 1 chr10:91119706-91122206 1 6 AGTACA 1 70.2446386664 3.74339997768 0.00237183292887 chr10_-_91122037_91122043|70.2446386664|3.74339997768 0.00234617602935161 IN ENSMUST00000170810 Novel Alt3 Excluded E1 6 -2.59048744293555e-06 -1.89394388650978e-05 7.75588510685541e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_93877642_93877664 ENSMUST00000047910.14 171 chr10:93871649-93879539 171 22 ACCCCTGTTAACCACCTAGCAG 1 80.6932500936 0.927307689562 1.74615877313e-12 chr10_-_93877642_93877664|80.6932500936|0.927307689562 7.11097847272413e-13 IN ENSMUST00000047910 Missing in GENCODE NA Excluded E1 6 0.000624822968394553 6.91487203474449e-05 0.00134702625936188 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_93985394_93985424 ENSMUST00000119818.7 8 chr10:93984493-93990139 8 30 GACCACCTTGAACTGGAATTACAGATGGAT 1 81.6548189984 None 0 chr10_-_93985394_93985424|81.6548189984|None 0 IN ENSMUST00000119818 Novel NA Excluded E1 6 -0.000252174233110577 -7.97091443250692e-05 -0.000642549284857301 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_93994181_93994201 ENSMUST00000119818.7 16 chr10:93993654-93996837,chr10:93993666-93996837 6,10 20 GTAAGTGCCAGTGGCAGCAG 1 79.8067422588 2.00195830564 1.11803899472e-11 chr10_-_93994181_93994201|79.8067422588|2.00195830564 5.30964161526981e-12 IN ENSMUST00000119818 Novel NA Excluded E1 6 0.00138511744913002 0.00106993537528779 -0.00098299846261801 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_95550474_95550477 ENSMUST00000020217.6 2 chr10:95549860-95551448 2 3 CAC 1 69.6267486441 0.179142856172 0.0919896729052 chr10_-_95550474_95550477|69.6267486441|0.179142856172 0.091321686752081 IN ENSMUST00000020217 Novel NA Excluded E4 11 0.000182986423388738 0.00305239494755663 -0.00463584683557781 TRUE FALSE FALSE FALSE FALSE FALSE chr10_-_95551201_95551204 ENSMUST00000020217.6 4 chr10:95549860-95551448 4 3 CAT 1 74.0394004326 0.204857150359 0.0919896729052 chr10_-_95551201_95551204|74.0394004326|0.204857150359 0.0837765942884559 IN ENSMUST00000020217 Novel NA Excluded E4 11 -0.000241790878357093 0.00221278892445929 7.85486056313154e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_100420534_100420545 ENSMUST00000134815.1 4 chr11:100416025+100420890 4 11 CATCGGTGTGG 1 73.9143101582 3.51153338552 4.51690428771e-06 chr11_+_100420534_100420545|73.9143101582|3.51153338552 4.13677021615655e-06 IN ENSMUST00000134815 Novel Alt5 Excluded E1 6 -0.000526835402488606 0.000643044523800666 -0.000657351357636878 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_101049458_101049476 ENSMUST00000103110.9 6964 chr11:101048525+101055025 6964 18 CCTACCGAGGACGAAGTG 1 81.5507209643 3.59968184341 3.6823166738e-10 chr11_+_101049458_101049476|81.5507209643|3.59968184341 1.29066868304051e-10 IN ENSMUST00000103110 Annotated NA Neuronal N1 18 0.081659776448224 0.0484921111869237 -0.0205096037566691 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE TRUE chr11_+_101049467_101049476 ENSMUST00000103110.9 59 chr11:101048525+101055025 59 9 GACGAAGTG 1 73.2581300133 3.74330770969 9.66591615869e-05 chr11_+_101049467_101049476|73.2581300133|3.74330770969 9.07694387649594e-05 IN ENSMUST00000103110 Novel NA Neuronal N6 15 0.0162663432102896 0.0029628039107983 0.0314593821052739 TRUE TRUE FALSE FALSE FALSE FALSE chr11_+_101428365_101428371 ENSMUST00000040561.5 738 chr11:101425610+101429451 738 6 GGCTTG 1 80.6776785469 2.33679999411 0.00364686203532 chr11_+_101428365_101428371|80.6776785469|2.33679999411 0.00148911591606271 IN ENSMUST00000040561 Missing in GENCODE NA Neuronal N1 18 0.0722606179948826 0.0245960583592914 0.0121079853935133 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr11_+_101469771_101469792 ENSMUST00000153185.7 5 chr11:101469020+101470012 5 21 ATGGCTGTGAGCCACCATGTG 1 72.0243870447 -0.0445200018771 8.5886853185e-13 chr11_+_101469771_101469792|72.0243870447|-0.0445200018771 8.3189011235163e-13 IN ENSMUST00000153185 Novel NA Excluded E2 3 -0.000254375088079528 0.00575396341579687 0.00285926348271986 TRUE FALSE TRUE FALSE FALSE FALSE chr11_+_101560432_101560451 ENSMUST00000103099.7 0 chr11:101559581+101562296,chr11:101554098+101568398,chr11:101559588+101562296,chr11:101559588+101562228 0 19 ATATCCATCAATAGTCAAG 1 91.6430857861 3.38026091821 9.52059053816e-09 chr11_+_101560432_101560451|91.6430857861|3.38026091821 1.55624713116254e-09 IN ENSMUST00000103099 Annotated NA Included I1 1 -7.78257797748945e-05 0.000170625688206606 -5.49723645562184e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_101562296_101562319 ENSMUST00000103099.7 0 chr11:101554098+101568398,chr11:101560451+101564628,chr11:101562240+101564628 0 23 GTGAATATGAAGAAGCACTTAAG 1 85.6151018177 4.71640738376 3.35518279826e-11 chr11_+_101562296_101562319|85.6151018177|4.71640738376 6.47648601415085e-12 IN ENSMUST00000103099 Annotated Alt5 Included I2 10 -0.00119101271798907 -0.0018396580440616 0.000463457483555639 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_102777630_102777648 ENSMUST00000135513.1 259 chr11:102777078+102778130 259 18 AAACATCCGTCGTGGAAG 1 78.0014095875 3.60577269373 5.85487214266e-11 chr11_+_102777630_102777648|78.0014095875|3.60577269373 3.69900776675536e-11 IN ENSMUST00000135513 Annotated NA Included I1 1 9.56935665615296e-07 -4.13518881985097e-06 -2.0781911488077e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_103183015_103183033 ENSMUST00000042286.11 258 chr11:103182767+103185620 258 18 GTGCCCCCCTTCTCCCCG 1 81.2541365158 1.81486361135 1.60923718795e-10 chr11_+_103183015_103183033|81.2541365158|1.81486361135 5.93963767059336e-11 IN ENSMUST00000042286 Annotated NA Neuronal N2 8 0.0586871808262027 -0.0164297980844194 -0.037959699666224 TRUE TRUE TRUE FALSE FALSE FALSE chr11_+_104305381_104305409 ENSMUST00000106992.9 2 chr11:104302410+104306625 2 28 TCCTGGAACAAAGCAGATGAAACTCAAG 1 75.5573672872 2.06096875388 0 chr11_+_104305381_104305409|75.5573672872|2.06096875388 0 IN ENSMUST00000106992 Novel Alt5 Excluded E1 6 -0.000623753935112227 0.00142899627200471 0.00125176568827719 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_104580401_104580429 ENSMUST00000018800.8 0 chr11:104577574+104583977 0 28 ATAGACTTCAGTGCTGACCAGATCGAAG 1 90.7969396766 3.34250003146 0 chr11_+_104580401_104580429|90.7969396766|3.34250003146 0 IN ENSMUST00000018800 Annotated Alt5_3 Included I3 5 -0.00440395323229397 -0.00388353992611584 -0.00301381825234412 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_105349567_105349594 ENSMUST00000100335.9 0 chr11:105348777+105349698 0 27 TGGAAGAGAACAGCTTCTTGCCATCAG 1 86.7584193299 1.2816774352 0 chr11_+_105349567_105349594|86.7584193299|1.2816774352 0 IN ENSMUST00000100335 Annotated NA Included I1 1 -5.35048399073216e-31 2.10228036806578e-30 1.95755517301874e-30 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_105914040_105914070 ENSMUST00000100330.9 202 chr11:105913489+105914891 202 30 GTTGTCAGACGTTACCGAGTCGCCCACGAG 1 82.7564282435 4.92976465997 0 chr11_+_105914040_105914070|82.7564282435|4.92976465997 0 IN ENSMUST00000100330 Annotated NA Other O1 4 0.0317439572128341 -0.0189414381937758 -0.0151454074736164 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_107485592_107485609 ENSMUST00000106750.4 1 chr11:107479684+107485707 1 17 AAAAGCAGACCCGGACT 1 81.9317577483 2.90309523188 1.36469680001e-09 chr11_+_107485592_107485609|81.9317577483|2.90309523188 4.47912817946872e-10 IN ENSMUST00000106750 Novel Alt5 Excluded E1 6 0.00072681481153824 -3.10404713718257e-05 0.000631735669433399 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_115572735_115572759 ENSMUST00000021085.10 87 chr11:115570120+115577929 87 24 CTCTCAAATACTTGGATTACACAC 1 85.1736432893 0.0382857093854 0 chr11_+_115572735_115572759|85.1736432893|0.0382857093854 0 IN ENSMUST00000021085 Novel NA Excluded E1 6 0.000848908192451669 0.000123253236647157 0.00151824930559773 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_115583183_115583212 ENSMUST00000021085.10 3 chr11:115583028+115583325 3 29 CTGGAAGATGCCTCACTAGAGGGATGGAT 1 77.1300589789 -0.261424241531 0 chr11_+_115583183_115583212|77.1300589789|-0.261424241531 0 IN ENSMUST00000021085 Novel NA Excluded E1 6 0.0001005750130984 0.000310524965614248 -0.000565057406437287 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_115854546_115854575 ENSMUST00000103032.10 0 chr11:115854355+115854811,chr11:115854355+115855062,chr11:115854355+115854731 0 29 GAACTCAAAGAGCCAAAGTGATGGAGATG 1 81.7243557946 0.955909086335 0 chr11_+_115854546_115854575|81.7243557946|0.955909086335 0 IN ENSMUST00000103032 Annotated Alt3 Other O2 21 -0.0113003435460359 -0.00279726671287739 -0.0278651742671258 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_115991885_115991909 ENSMUST00000021107.13 0 chr11:115991716+115993054 0 24 ACAGCAGCCCAACACCGGGAAAAA 1 81.4474515714 1.60785713932 4.65405491923e-12 chr11_+_115991885_115991909|81.4474515714|1.60785713932 1.66078262253677e-12 IN ENSMUST00000021107 Annotated NA Included I1 1 7.08780310980429e-07 3.97540447523421e-06 -8.7631844876463e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_116859348_116859378 ENSMUST00000106363.9 0 chr11:116858581+116859496 0 30 CATCTGTCTTCATCGGAATTGCCGCTGCTG 1 81.697770227 3.44744120935 0 chr11_+_116859348_116859378|81.697770227|3.44744120935 0 IN ENSMUST00000106363 Annotated Alt5 Excluded E3 2 0.0015663879475564 0.000948051586470329 0.000410170516545454 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_116974187_116974197 ENSMUST00000136584.1 44 chr11:116973431+116977680 44 10 GCAGCTCCAG 1 72.9907551624 1.51514284951 1.57764799934e-05 chr11_+_116974187_116974197|72.9907551624|1.51514284951 1.49387179780858e-05 IN ENSMUST00000136584 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_116974191_116974197 ENSMUST00000136584.1 651 chr11:116973431+116977680 651 6 CTCCAG 1 71.690410168 2.00699999332 0.00403446693717 chr11_+_116974191_116974197|71.690410168|2.00699999332 0.0039296435677838 IN ENSMUST00000136584 Annotated NA Included I2 10 0.0130370070749683 -0.0423155145898783 -0.0166543493497709 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_117702378_117702400 ENSMUST00000026658.12 0 chr11:117700824+117714125 0 22 GCTGCTGATCAAAAAACCAAAG 1 96.4328037868 2.83561536899 7.54596385377e-10 chr11_+_117702378_117702400|96.4328037868|2.83561536899 2.12284856360156e-10 IN ENSMUST00000026658 Annotated NA Included I1 1 -1.73839987006297e-11 1.33729694910795e-10 5.24505866923256e-11 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_120708980_120708999 ENSMUST00000167678.1 4 chr11:120708709+120709070 4 19 CTGATGTGCTGGTGGCCAG 1 86.4559998671 1.79317393122 4.80326889374e-12 chr11_+_120708980_120708999|86.4559998671|1.79317393122 8.5442763975152e-13 IN ENSMUST00000167678 Novel Alt5 Excluded E3 2 -0.00124029970426606 0.000602902626515988 -0.0033716892550719 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_121216892_121216905 ENSMUST00000124925.7 2 chr11:121214924+121218087 2 13 GTCTACTACTTGG 1 84.0958229481 2.973882293 1.83121284469e-07 chr11_+_121216892_121216905|84.0958229481|2.973882293 4.27095685484602e-08 IN ENSMUST00000124925 Novel Alt3 Excluded E1 6 -0.000554285040228751 0.000361210230957558 -0.00189692526448344 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_121556955_121556985 ENSMUST00000103013.9 0 chr11:121550281+121560674 0 30 GCTGCCTTCCAGGAGAACGTGGGGAGACAG 1 85.5721160624 3.4461469922 0 chr11_+_121556955_121556985|85.5721160624|3.4461469922 0 IN ENSMUST00000103013 Annotated NA Included I1 1 3.20027755694803e-100 5.5172659640971e-99 1.45133753184455e-99 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_121580147_121580170 ENSMUST00000103013.9 0 chr11:121578775+121582752 0 23 CTTTGTGACCGCCATCTCTATAG 1 86.4351802603 1.33544444431 5.6132876125e-11 chr11_+_121580147_121580170|86.4351802603|1.33544444431 1.00037755856874e-11 IN ENSMUST00000103013 Annotated NA Included I1 1 1.00570532878685e-54 -2.16114691256957e-53 -6.05599759709494e-55 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_21886259_21886288 ENSMUST00000020568.9 0 chr11:21885087+21898475 0 29 GAGAACTGAAAGAAGACCAAAGGAAACAG 1 81.8168528537 0.458181819346 0 chr11_+_21886259_21886288|81.8168528537|0.458181819346 0 IN ENSMUST00000020568 Annotated NA Included I1 1 2.61091607351458e-30 -1.0598438992599e-29 -8.95173038361439e-30 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_23256691_23256717 ENSMUST00000102870.7 0 chr11:23256151+23261834 0 26 GAAGAAGCAGTTGGTTGAATTTCTGG 1 69.8940544416 1.59743333173 1.25521815164e-12 chr11_+_23256691_23256717|69.8940544416|1.59743333173 1.24433796599988e-12 IN ENSMUST00000102870 Annotated Alt5 Excluded E2 3 0.00100647921742689 -1.52317982580735e-05 0.00585140746171702 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_23268660_23268690 ENSMUST00000020538.12 19 chr11:23267763+23271132 19 30 ATGATTAGAGGAACAGAAAGAAAGCAACAG 1 71.2273724451 4.18079411633 0 chr11_+_23268660_23268690|71.2273724451|4.18079411633 0 IN ENSMUST00000020538 Novel Alt5 Excluded E1 6 8.38408556415925e-05 0.000439564798183596 -0.00015066950161752 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_23270466_23270495 ENSMUST00000020538.12 20 chr11:23267763+23271132 20 29 CTTCCATGTCTGTAAGGAATACCTGAAAG 1 75.2605756784 1.96272726605 0 chr11_+_23270466_23270495|75.2605756784|1.96272726605 0 IN ENSMUST00000020538 Novel NA Excluded E1 6 0.000932376797675174 0.000383509298341483 0.000456684024030413 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_29139258_29139275 ENSMUST00000131527.1 0 chr11:29138604+29139947 0 17 ATTATGAACATGATAAA 1 81.2201967587 3.17885718406 7.695052473e-08 chr11_+_29139258_29139275|81.2201967587|3.17885718406 2.85712108416547e-08 IN ENSMUST00000131527 Annotated Alt5 Excluded E1 6 0.0001016976494224 0.000143604665609335 0.000971773864773691 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_29706409_29706439 ENSMUST00000102842.9 16 chr11:29705591+29733632 16 30 AAAAAATTATGGATTTGAAGGAGCAGCCAG 1 75.8888927674 3.12720591706 0 chr11_+_29706409_29706439|75.8888927674|3.12720591706 0 IN ENSMUST00000102842 Missing in GENCODE Alt3 Excluded E2 3 0.000261154887237142 -0.000565316721118587 0.000403208771833851 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_31918800_31918824 ENSMUST00000155278.1 51 chr11:31908875+31920408 51 24 CAAGGACTTATGGGCGAAGGAGAG 1 76.7706013894 5.54767845997 0 chr11_+_31918800_31918824|76.7706013894|5.54767845997 0 IN ENSMUST00000155278 Annotated NA Neuronal N2 8 0.0540079257986286 0.0334312711120115 -0.044146599763255 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr11_+_32397065_32397091 ENSMUST00000038753.5 0 chr11:32396533+32403860 0 26 GGAGCATATTGGGAAGAAGAAATCAG 1 86.7879741946 3.5606000013 1.62025948214e-12 chr11_+_32397065_32397091|86.7879741946|3.5606000013 2.80442336020315e-13 IN ENSMUST00000038753 Annotated NA Included I1 1 -2.8826846685947e-56 3.56435722211314e-56 8.43034243097934e-56 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_34078243_34078269 ENSMUST00000052413.11 0 chr11:34075299+34078384 0 26 GAAAGAAACCACCATTTTCTGATAAG 1 82.7330536601 1.98270004168 6.78346268046e-13 chr11_+_34078243_34078269|82.7330536601|1.98270004168 1.94733118519252e-13 IN ENSMUST00000052413 Annotated Alt5 Included I1 1 -1.00195134265761e-12 -5.65875079024666e-12 1.89577240314647e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_34078384_34078404 ENSMUST00000052413.11 0 chr11:34078269+34078507 0 20 CCCTCAGCCCCATTGGGGAG 1 89.6605965601 0.802375012097 1.94631866179e-10 chr11_+_34078384_34078404|89.6605965601|0.802375012097 3.00994784652175e-11 IN ENSMUST00000052413 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_34081719_34081732 ENSMUST00000052413.11 0 chr11:34080220+34082393 0 13 GATGAAGATGATG 1 90.6024161861 2.20164709686 3.2126385795e-05 chr11_+_34081719_34081732|90.6024161861|2.20164709686 5.03214489422366e-06 IN ENSMUST00000052413 Annotated NA Included I1 1 7.24758138818477e-09 4.49200816924696e-08 -1.45874207178746e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_40736492_40736506 ENSMUST00000127382.1 1 chr11:40736066+40736567 1 14 AGGACAGAAAAATG 1 77.7858248033 3.66888890995 7.0285750553e-09 chr11_+_40736492_40736506|77.7858248033|3.66888890995 4.57575310974789e-09 IN ENSMUST00000127382 Novel Alt3 Excluded E1 6 9.65962768413916e-07 -5.07249792792177e-05 -2.30518527660149e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_44562073_44562082 ENSMUST00000019333.9 163 chr11:44561821+44563919 163 9 GAAAAACAG 1 73.0591525771 3.03599995833 3.10684386867e-05 chr11_+_44562073_44562082|73.0591525771|3.03599995833 2.93590084275985e-05 IN ENSMUST00000019333 Novel NA Excluded E1 6 0.000366054001848061 -0.000108649015690278 0.00167045119620655 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_46439805_46439824 ENSMUST00000170928.7 21 chr11:46437009+46440562,chr11:46437191+46440562 7,14 19 GATCATCTGTCCCTATCGG 1 87.3464092203 0.412869577822 4.75779415865e-11 chr11_+_46439805_46439824|87.3464092203|0.412869577822 7.91700038860199e-12 IN ENSMUST00000170928 Annotated Alt3 Excluded E3 2 -0.00141086902208809 -0.00155106262670094 -0.00534833595630809 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_46456255_46456284 ENSMUST00000109229.1 0 chr11:46455058+46456431 0 29 GGTCATTGGAAAATGCTTATGTGTTTGAG 1 81.8385356283 0.12624242676 0 chr11_+_46456255_46456284|81.8385356283|0.12624242676 0 IN ENSMUST00000109229 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_48847514_48847537 ENSMUST00000109213.8 0 chr11:48845666+48848024 0 23 GAGTTCAAAAGCACACTGAGCAA 1 86.7480613165 1.76529629073 3.31255023411e-11 chr11_+_48847514_48847537|86.7480613165|1.76529629073 5.75195446828047e-12 IN ENSMUST00000109213 Annotated NA Included I1 1 6.55394616252063e-08 1.62647437092312e-06 1.04745632771965e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_4911457_4911470 ENSMUST00000101615.8 1 chr11:4910759+4912780 1 13 CCCCCTAGACAGG 1 80.4556717943 2.68500003394 1.16648145698e-07 chr11_+_4911457_4911470|80.4556717943|2.68500003394 4.95171404990558e-08 IN ENSMUST00000101615 Novel Alt5 Excluded E1 6 0.00132789290932722 -0.000843067104032952 -0.000571247425713681 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_49214222_49214243 ENSMUST00000150284.7 8 chr11:49213642+49214525,chr11:49213642+49214554,chr11:49213642+49215063 3,1,4 21 GCTGGAGCATGTTTCTACCAT 1 85.842391157 -0.283960005678 7.62057084103e-13 chr11_+_49214222_49214243|85.842391157|-0.283960005678 1.43662859386495e-13 IN ENSMUST00000150284 Novel Alt3 Excluded E1 6 -0.00197754185904473 0.000435573524945071 -0.00412968602219356 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_49214643_49214654 ENSMUST00000109198.7 1 chr11:49213642+49215063 1 11 TAGTTCTAAAG 1 79.4931361416 0.199533327793 1.30943868315e-06 chr11_+_49214643_49214654|79.4931361416|0.199533327793 6.55718605191424e-07 IN ENSMUST00000109198 Novel Alt5 Excluded E1 6 0.000685798510337413 -0.000949233345130485 -0.000342740544669707 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_5033241_5033262 ENSMUST00000109897.7 1959 chr11:5032619+5033686 1959 21 ATGGGGGATGAGTCTGAAGGG 1 76.9049448223 4.6273199749 9.25481913328e-13 chr11_+_5033241_5033262|76.9049448223|4.6273199749 6.73128219830232e-13 IN ENSMUST00000109897 Annotated NA Neuronal N1 18 0.0677874625992297 -0.00451145798271294 0.048177358507297 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE TRUE FALSE chr11_+_50377779_50377802 ENSMUST00000109142.7 1 chr11:50377440+50378290 1 23 CCACGCCGAGGCTTTTTGTGGAG 1 86.6386806957 0.211222210623 0 chr11_+_50377779_50377802|86.6386806957|0.211222210623 0 IN ENSMUST00000109142 Novel Alt5 Excluded E4 11 0.005167463019057 0.00310706115316869 0.0176151644918363 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_5040920_5040929 ENSMUST00000109897.7 3325 chr11:5040421+5041717 3325 9 GACTTGGAG 1 76.7722586715 2.64661537684 1.91180072027e-05 chr11_+_5040920_5040929|76.7722586715|2.64661537684 1.41158196645952e-05 IN ENSMUST00000109897 Missing in GENCODE NA Neuronal N6 15 0.0246325515563485 0.000998910783739405 0.0413057539920891 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr11_+_51525951_51525959 ENSMUST00000102765.8 0 chr11:51517250+51527867 0 8 GTCCTCCA 1 85.8217096571 1.71974998216 0.149397890695 chr11_+_51525951_51525959|85.8217096571|1.71974998216 0.0282197431315253 IN ENSMUST00000102765 Annotated NA Included I1 1 1.19871175617478e-11 -2.92907733891358e-12 -1.3399230631718e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_51527867_51527894 ENSMUST00000102765.8 0 chr11:51525959+51549692 0 27 GGGCAATCAGGACGAGATGGCTACCCG 1 78.3739528005 2.56732262979 0 chr11_+_51527867_51527894|78.3739528005|2.56732262979 0 IN ENSMUST00000102765 Annotated NA Included I1 1 1.84096264394937e-10 2.90250791540513e-10 -6.43097488534077e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_51549692_51549719 ENSMUST00000102765.8 0 chr11:51527894+51551133 0 27 GGACCTCTAGGTCTGGACGGCAAGCCC 1 82.914974901 1.57529031233 0 chr11_+_51549692_51549719|82.914974901|1.57529031233 0 IN ENSMUST00000102765 Annotated NA Included I1 1 -5.79759295087199e-12 9.29577679393137e-13 3.7034387847694e-11 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_51551133_51551160 ENSMUST00000102765.8 0 chr11:51549719+51551975 0 27 GGACTTCCAGGCCCCAAAGGGGAAAAG 1 93.0156606602 2.49741936932 0 chr11_+_51551133_51551160|93.0156606602|2.49741936932 0 IN ENSMUST00000102765 Annotated NA Included I1 1 -3.41095418760825e-13 3.14041262738e-13 1.02610689815659e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_51551975_51552002 ENSMUST00000102765.8 0 chr11:51551160+51557470 0 27 GGTACACCGGGAGACTTTGGCCCGCGG 1 82.6576818497 1.97774195575 0 chr11_+_51551975_51552002|82.6576818497|1.97774195575 0 IN ENSMUST00000102765 Annotated NA Included I1 1 -3.84861889556812e-18 2.79459952645347e-18 8.77661644694452e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_51560006_51560033 ENSMUST00000102765.8 0 chr11:51558464+51561888 0 27 GGCCCCAAAGGACCTCCAGGACCCAAG 1 87.3222750492 1.79293549926 0 chr11_+_51560006_51560033|87.3222750492|1.79293549926 0 IN ENSMUST00000102765 Annotated NA Included I1 1 -1.9787444326951e-18 2.38542090075443e-18 4.8856619042462e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_51561888_51561915 ENSMUST00000102765.8 0 chr11:51560033+51562999 0 27 GGAGAACCTGGCATTCCTGGGAAGAAG 1 88.7113882179 1.35893548989 0 chr11_+_51561888_51561915|88.7113882179|1.35893548989 0 IN ENSMUST00000102765 Annotated NA Included I1 1 8.22937298898373e-18 -6.99267506332648e-18 -1.65291805906048e-17 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_51568471_51568495 ENSMUST00000102765.8 33 chr11:51567973+51569460 33 24 GCCTCCGGGAAGTACAAGTTGATG 1 81.5336992958 0.486071425157 0 chr11_+_51568471_51568495|81.5336992958|0.486071425157 0 IN ENSMUST00000102765 Novel NA Excluded E2 3 -0.00290297233101526 -0.0192652366145377 0.0131601764313059 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_51572757_51572784 ENSMUST00000102765.8 0 chr11:51572512+51574000 0 27 GGCCTTCAGGGGATCCAAGGTCCCAAG 1 89.3504431141 2.55683870337 0 chr11_+_51572757_51572784|89.3504431141|2.55683870337 0 IN ENSMUST00000102765 Annotated NA Included I1 1 8.63009912316881e-28 -6.27163505637315e-28 -1.94003784069859e-27 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_51574431_51574458 ENSMUST00000102765.8 0 chr11:51574200+51576850 0 27 GGCAGACCTGGAGAACCAGGACTCGAT 1 83.4088104502 3.02212896631 0 chr11_+_51574431_51574458|83.4088104502|3.02212896631 0 IN ENSMUST00000102765 Annotated NA Included I1 1 -3.72361459497312e-25 4.33245696465305e-25 8.60100295692058e-25 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_51779244_51779274 ENSMUST00000020653.5 1 chr11:51777561+51779688 1 30 CTCTGGCTGCCCTGGAACTATGTTAACCAG 1 83.337719952 0.160588229952 0 chr11_+_51779244_51779274|83.337719952|0.160588229952 0 IN ENSMUST00000020653 Novel NA Excluded E1 6 1.06744499568685e-05 2.48329829055867e-05 8.47168126579053e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_51900054_51900058 ENSMUST00000212253.1 1 chr11:51899096+51903126 1 4 TAAT 1 65.3950168219 -0.387625005096 0.0595260398231 chr11_+_51900054_51900058|65.3950168219|-0.387625005096 0.0595062938952355 IN ENSMUST00000212253 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_53164410_53164437 ENSMUST00000036796.7 0 chr11:53163151+53165753 0 27 TGGCAAACATCTTGTGGCGGGAAGAAG 1 71.7938176678 5.17867746228 0 chr11_+_53164410_53164437|71.7938176678|5.17867746228 0 IN ENSMUST00000036796 Annotated NA Included I1 1 1.99064284390275e-21 -1.28109713722539e-21 -5.70072823863428e-21 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_53590716_53590725 ENSMUST00000057330.14 2213 chr11:53586930+53593373 2213 9 ACCAAGCAG 1 74.763529145 4.16961536041 9.58098771309e-05 chr11_+_53590716_53590725|74.763529145|4.16961536041 8.39589326318002e-05 IN ENSMUST00000057330 Annotated NA Neuro-Muscular NM3 19 0.0380993252343004 -0.000685532838362854 -0.148531613189905 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE FALSE FALSE chr11_+_53595316_53595337 ENSMUST00000057330.14 12 chr11:53594951+53597958 12 21 AACCCAGGACCCCCTGTCCAG 1 85.8904523389 0.0302400010824 2.64854804755e-12 chr11_+_53595316_53595337|85.8904523389|0.0302400010824 4.96824803519758e-13 IN ENSMUST00000057330 Novel NA Excluded E1 6 -0.000312386780340275 0.000279676914954246 0.000480001691052904 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_54647097_54647109 ENSMUST00000102743.9 99 chr11:54642951+54649181 99 12 GAGACTGTTTTG 1 79.3817184448 2.50400000019 1.44680857317e-06 chr11_+_54647097_54647109|79.3817184448|2.50400000019 7.38090511931411e-07 IN ENSMUST00000102743 Missing in GENCODE NA Excluded E1 6 0.00234993417574135 0.000623761911316812 0.00188578265290129 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_54651748_54651763 ENSMUST00000102743.9 477 chr11:54649339+54657245 477 15 CTGTTGGTTTTTACT 1 80.4685847843 3.78868422383 2.86927384074e-08 chr11_+_54651748_54651763|80.4685847843|3.78868422383 1.21526285701279e-08 IN ENSMUST00000102743 Annotated NA Neuronal N3 17 0.0561485314657671 0.025319911283355 0.0194567874661695 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr11_+_54671654_54671678 ENSMUST00000102743.9 150 chr11:54668737+54676194 150 24 GAAGAAGAGGTGGCGGAGTCTGGG 1 86.3266628073 5.89824990715 0 chr11_+_54671654_54671678|86.3266628073|5.89824990715 0 IN ENSMUST00000102743 Annotated NA Neuro-Muscular NM4 16 0.0263443524525657 -0.0102449454465402 -0.0315223521984108 TRUE TRUE TRUE 13.5 1 TRUE FALSE FALSE chr11_+_58172480_58172501 ENSMUST00000020820.1 1 chr11:58171842+58173032 1 21 TCCTGAGTATTCATAAAACCT 1 73.188006263 0.397040006109 1.03472785895e-12 chr11_+_58172480_58172501|73.188006263|0.397040006109 9.73887637201187e-13 IN ENSMUST00000020820 Novel NA Excluded E1 6 0.000121826551726096 2.8695563603041e-05 0.000163941653512322 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_58646932_58646955 ENSMUST00000075084.4 0 chr11:58646126+58647051 0 23 GGAGCGAGAGGAGTCTTGACACG 1 89.3065251375 0.990037048305 1.27613475343e-11 chr11_+_58646932_58646955|89.3065251375|0.990037048305 1.97664107304263e-12 IN ENSMUST00000075084 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_58970426_58970449 ENSMUST00000047697.11 0 chr11:58968717+58970541,chr11:58968717+58970545 0 23 GATGTGAAGGACACCTTGAACAG 1 81.147621612 0.957518517247 2.55369059232e-11 chr11_+_58970426_58970449|81.147621612|0.957518517247 9.60287405149529e-12 IN ENSMUST00000047697 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_58988724_58988747 ENSMUST00000108809.7 0 chr11:58982223+58988835,chr11:58982223+58988828,chr11:58987680+58988828 0 23 GACATTAAGGACGCCCTGTGCAG 1 86.8917269615 1.44311111144 1.59303681357e-11 chr11_+_58988724_58988747|86.8917269615|1.44311111144 2.73570055497885e-12 IN ENSMUST00000108809 Annotated NA Included I1 1 -9.34298800405136e-96 1.39144336258469e-95 1.09471555203895e-95 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_5960426_5960441 ENSMUST00000002818.8 200 chr11:5959379+5961187 200 15 CTCCATAAACAAGAG 1 76.3243436481 -0.0381052654825 6.50834408589e-09 chr11_+_5960426_5960441|76.3243436481|-0.0381052654825 5.03756969472136e-09 IN ENSMUST00000002818 Missing in GENCODE NA Excluded E1 6 0.00134132729499603 0.000370331570445894 0.00194058545394459 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_67025908_67025938 ENSMUST00000079077.11 0 chr11:67025271+67029965,chr11:67025271+67026122 0 30 GTAAACGATCCAGATGCAGAGTTGTGGGTG 1 83.8780629811 1.99823532297 0 chr11_+_67025908_67025938|83.8780629811|1.99823532297 0 IN ENSMUST00000079077 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_67056583_67056607 ENSMUST00000136984.7 0 chr11:67055903+67058326 0 24 AAGCCATTGCGACTTATGTGAAAG 1 68.2112225415 3.70889289305 8.50874926073e-12 chr11_+_67056583_67056607|68.2112225415|3.70889289305 8.48521253260515e-12 IN ENSMUST00000136984 Annotated Alt5 Excluded E3 2 -0.00198057381031427 0.000366206921761611 -0.0038714983664712 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_67083398_67083426 ENSMUST00000108689.7 0 chr11:67083007+67083749 0 28 ATCGTGAGAACCAGTCTATCCTGATCAC 1 83.8666691664 4.62984377984 0 chr11_+_67083398_67083426|83.8666691664|4.62984377984 0 IN ENSMUST00000108689 Annotated NA Included I1 1 2.74079304462564e-07 4.6497153195865e-07 1.2064990557619e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_67176143_67176171 ENSMUST00000170159.7 0 chr11:67175099+67176253 0 28 ACAGGGAGAATCAGTCAATCCTGATCAC 1 87.3508631661 4.78146872041 0 chr11_+_67176143_67176171|87.3508631661|4.78146872041 0 IN ENSMUST00000170159 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_67203575_67203603 ENSMUST00000124516.7 0 chr11:67202589+67204348 0 28 ATCGGGAGAACCAGTCTATTTTGATCAC 1 84.8291702924 4.53121872968 0 chr11_+_67203575_67203603|84.8291702924|4.53121872968 0 IN ENSMUST00000124516 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_67242140_67242168 ENSMUST00000018632.10 0 chr11:67241550+67242260 0 28 ATCGTGAGAATCAGTCCATCCTGATTAC 1 84.8096281739 4.64518752415 0 chr11_+_67242140_67242168|84.8096281739|4.64518752415 0 IN ENSMUST00000018632 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_67283251_67283279 ENSMUST00000019625.11 0 chr11:67280275+67283377 0 28 ATCGTGAGAACCAGTCCATCCTGATCAC 1 81.2308655125 4.4719063025 0 chr11_+_67283251_67283279|81.2308655125|4.4719063025 0 IN ENSMUST00000019625 Annotated NA Included I1 1 3.21520445540742e-07 6.99855926833696e-08 1.6662075279815e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_68734387_68734415 ENSMUST00000102611.9 0 chr11:68721476+68745316 0 28 ATCGTGAGGACCAGTCAATTCTATGCAC 1 86.0649848637 2.50056249858 0 chr11_+_68734387_68734415|86.0649848637|2.50056249858 0 IN ENSMUST00000102611 Annotated NA Included I1 1 1.73669686637127e-82 -1.83259570213917e-82 -5.75111948479051e-82 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_69587256_69587278 ENSMUST00000108658.9 0 chr11:69586973+69587371 0 22 ACTTCCTCCAGAAGATATCCTG 1 86.744056218 0.796461532895 2.11457518162e-11 chr11_+_69587256_69587278|86.744056218|0.796461532895 3.67295083236741e-12 IN ENSMUST00000108658 Annotated NA Included I1 1 -8.26822541821124e-71 -3.08609611346584e-71 -1.20877976253552e-70 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_69992675_69992700 ENSMUST00000108592.1 0 chr11:69992443+69994458 0 25 TGCCACGATGGGTCAGCTGTACCAG 1 72.4538993311 4.28872416297 1.76392234152e-12 chr11_+_69992675_69992700|72.4538993311|4.28872416297 1.69353420176321e-12 IN ENSMUST00000108592 Annotated Alt5 Excluded E2 3 0.000294173835303018 0.000320695574352156 0.000505221279902355 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_70041900_70041928 ENSMUST00000108589.8 0 chr11:70041808+70042056 0 28 GACTGGGGCTCCAGCTCTGGATCACAGG 1 85.1413953411 1.96368752129 0 chr11_+_70041900_70041928|85.1413953411|1.96368752129 0 IN ENSMUST00000108589 Annotated NA Included I1 1 -2.62277038646133e-07 1.42938534732891e-06 6.48494413057876e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_70609407_70609431 ENSMUST00000072873.13 306 chr11:70609254+70609553 306 24 AGCTATAAGCGAGCAATTGGCGAG 1 79.2440604476 4.46871431784 0 chr11_+_70609407_70609431|79.2440604476|4.46871431784 0 IN ENSMUST00000072873 Annotated NA Neuronal N2 8 0.0539809928863227 -0.0109355473072216 -0.00911320096956348 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr11_+_70723903_70723925 ENSMUST00000102554.7 130 chr11:70719093+70724047 130 22 AGGGGCTGTGGCACCCCTGCAG 1 73.5675238717 1.71884615977 1.09423581307e-12 chr11_+_70723903_70723925|73.5675238717|1.71884615977 1.01640917904433e-12 IN ENSMUST00000102554 Missing in GENCODE NA Neuronal N6 15 0.0204889008173406 0.0109039800378055 -0.00900739821092092 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_72970595_72970613 ENSMUST00000021142.7 0 chr11:72961471+72970847 0 18 AGCTCCCGACCGAGGAAG 1 80.6095228191 3.20359087871 1.36118605831e-07 chr11_+_72970595_72970613|80.6095228191|3.20359087871 5.62484882005165e-08 IN ENSMUST00000021142 Annotated NA Included I1 1 2.24013022894571e-16 2.92653749557301e-16 -4.73825782105444e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_73029141_73029163 ENSMUST00000155720.1 0 chr11:73028265+73030802 0 22 TGTTCGACCTCCTGAGAAAAGG 1 87.4978088486 3.92326921053 1.42733824759e-10 chr11_+_73029141_73029163|87.4978088486|3.92326921053 2.353162109614e-11 IN ENSMUST00000155720 Annotated NA Included I1 1 -8.42274078099664e-10 1.07519259407699e-08 1.79864780435067e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_75566403_75566415 ENSMUST00000108433.7 519 chr11:75563708+75566978 519 12 TGATGGCGACTG 1 78.2146810821 2.35006249696 7.57630627568e-07 chr11_+_75566403_75566415|78.2146810821|2.35006249696 4.64190713644896e-07 IN ENSMUST00000108433 Missing in GENCODE Alt5 Neuronal N1 18 0.0572294236609422 0.021374903751376 -0.0126014145192865 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr11_+_75608106_75608114 ENSMUST00000102509.10 3 chr11:75603480+75612219 3 8 TTATTACA 1 76.3790339585 4.11124996344 0.000520034485627 chr11_+_75608106_75608114|76.3790339585|4.11124996344 0.000400317478591594 IN ENSMUST00000102509 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_75756816_75756834 ENSMUST00000134745.7 2 chr11:75755652+75759291 2 18 GAAAGGGGACTACCACAG 1 80.2303504775 4.83659092405 2.0560264602e-10 chr11_+_75756816_75756834|80.2303504775|4.83659092405 9.07716124487479e-11 IN ENSMUST00000134745 Novel Alt3 Excluded E1 6 9.89577513472472e-06 -2.17694139061474e-06 1.46981041311081e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_77502828_77502855 ENSMUST00000037285.9 0 chr11:77501114+77503017 0 27 ATCTCGGCAAAAGTGCATGTCTCAGAG 1 71.5739860981 2.66806451351 0 chr11_+_77502828_77502855|71.5739860981|2.66806451351 0 IN ENSMUST00000037285 Annotated NA Neuronal N1 18 0.0732081223501439 0.0256843018132533 0.012256829286864 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr11_+_77821529_77821550 ENSMUST00000100794.9 5 chr11:77821186+77823275 5 21 AGCCCCTTGAGGAGCAAGACG 1 77.851356501 1.74127999812 1.83320025826e-12 chr11_+_77821529_77821550|77.851356501|1.74127999812 1.18272058813318e-12 IN ENSMUST00000100794 Annotated NA Neuronal N6 15 0.00850705608922911 0.00402644197267578 0.0581139244509067 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_77822662_77822674 ENSMUST00000100794.9 985 chr11:77821186+77823275 985 12 AAGCTGCTGAAG 1 84.4512409124 3.0618125312 4.82657807832e-07 chr11_+_77822662_77822674|84.4512409124|3.0618125312 1.07220858303059e-07 IN ENSMUST00000100794 Annotated NA Neuronal N5 14 0.049485538568059 0.0734172332918148 0.0102321460301445 TRUE TRUE TRUE 14.5 1 TRUE TRUE FALSE chr11_+_77822665_77822674 ENSMUST00000100794.9 36 chr11:77821186+77823275 36 9 CTGCTGAAG 1 75.4057259719 2.8615384973 3.09343323925e-05 chr11_+_77822665_77822674|75.4057259719|2.8615384973 2.59469555050629e-05 IN ENSMUST00000100794 Annotated NA Neuronal N4 13 0.030789684980827 0.0108795136234904 0.0543174593855855 TRUE TRUE TRUE FALSE FALSE FALSE chr11_+_77977275_77977283 ENSMUST00000000646.13 1 chr11:77976941+77977536 1 8 CCTGGATG 1 71.3423809199 2.07933332647 3.47489051825e-05 chr11_+_77977275_77977283|71.3423809199|2.07933332647 3.40122613573524e-05 IN ENSMUST00000000646 Novel Alt5 Excluded E1 6 0.000373940394959317 -0.00132652528395743 0.00176354482062158 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_78264241_78264266 ENSMUST00000010421.6 9 chr11:78264059+78264463 9 25 GAAGAACAGCCAGTGCTCTTATTCG 1 72.5386278802 0.0975517240064 0 chr11_+_78264241_78264266|72.5386278802|0.0975517240064 0 IN ENSMUST00000010421 Novel NA Excluded E1 6 -0.000363767903295482 0.000239020609640532 -0.000743132016243407 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_78291223_78291226 ENSMUST00000046361.4 1 chr11:78290939+78291423 1 3 CAT 1 71.7239356045 0.28328571575 0.028694909865 chr11_+_78291223_78291226|71.7239356045|0.28328571575 0.0279348024032929 IN ENSMUST00000046361 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_78293383_78293411 ENSMUST00000046361.4 0 chr11:78292994+78293528 0 28 ATGGAGAATATCCTGCTGGATGAACGAG 1 79.7464240944 3.42343753879 0 chr11_+_78293383_78293411|79.7464240944|3.42343753879 0 IN ENSMUST00000046361 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_78518952_78518979 ENSMUST00000001127.10 0 chr11:78518209+78519179 0 27 GAAGCCCAGAATTCCCACGTCTACTGG 1 90.611634818 5.21645162423 0 chr11_+_78518952_78518979|90.611634818|5.21645162423 0 IN ENSMUST00000001127 Annotated Alt5 Included I2 10 -0.00159460566053632 -0.00116007406851476 -0.00209189053462113 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_78538709_78538738 ENSMUST00000108275.1 4 chr11:78536576+78538833 4 29 ACCTCTAGGGCTTCCTGGAAGGGAAACAG 1 78.6738863401 0.890939387182 0 chr11_+_78538709_78538738|78.6738863401|0.890939387182 0 IN ENSMUST00000108275 Novel Alt5 Excluded E3 2 0.000763483910113672 -0.000994140129872223 -0.00422920646508754 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_79414240_79414270 ENSMUST00000108251.8 40 chr11:79412758+79418551 40 30 AGCACTTTCAAGCATGGACTTGGCACTGCT 1 70.509907388 3.10132351518 0 chr11_+_79414240_79414270|70.509907388|3.10132351518 0 IN ENSMUST00000108251 Annotated NA Neuronal N6 15 0.0215295856167721 -0.000985707784030558 0.0735490281063776 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_80302663_80302687 ENSMUST00000017836.7 0 chr11:80301271+80319557 0 24 CACTGGAAAGTCCTGTTTGAAAAG 1 83.3348887617 2.89025001866 6.48654463475e-11 chr11_+_80302663_80302687|83.3348887617|2.89025001866 1.69251279658056e-11 IN ENSMUST00000017836 Annotated NA Included I1 1 -1.26963733359183e-07 8.18756286185327e-07 3.59121518678684e-07 TRUE TRUE TRUE FALSE FALSE FALSE chr11_+_83305561_83305579 ENSMUST00000142680.1 156 chr11:83302837+83308214,chr11:83305090+83308214 145,11 18 ATGTCTTATACCTGCTAG 1 80.8395052419 0.183409090069 1.76328285306e-10 chr11_+_83305561_83305579|80.8395052419|0.183409090069 6.99859059594132e-11 IN ENSMUST00000142680 Missing in GENCODE NA Excluded E1 6 0.00225175150959823 0.00101501567564554 0.000879254766814959 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_83417185_83417211 ENSMUST00000021022.9 71 chr11:83412834+83417851 71 26 ACAGCAACCTGAGGGCTGTGTCAGGG 1 77.2780404628 -0.107699997723 0 chr11_+_83417185_83417211|77.2780404628|-0.107699997723 0 IN ENSMUST00000021022 Novel NA Excluded E1 6 -3.42193547134549e-06 0.00144493956485384 0.00300417260010888 TRUE TRUE TRUE 12.5 -1 FALSE TRUE TRUE chr11_+_83973673_83973676 ENSMUST00000092834.11 4 chr11:83971592+83977079,chr11:83971592+83977082 1,3 3 CAG 3 71.6405190704 None 0.284291890875 chr11_+_83973673_83973676|71.6405190704|None,chr11_+_83972446_83972449|55.89274802|0.0271428525448,chr11_+_83973091_83973094|63.636018997|0.675142847002 0.759038525054292 RESCUED ENSMUST00000092834 Novel NA Excluded E4 11 0.00204733455268074 -0.00404116220065692 0.0112622546745755 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_84290287_84290311 ENSMUST00000183887.1 350 chr11:84280510+84292890 350 24 AGGGAACATCCCCACGCTAAACAG 1 79.2421269517 6.16199992384 0 chr11_+_84290287_84290311|79.2421269517|6.16199992384 0 IN ENSMUST00000183887 Annotated NA Included I1 1 0.00150452122079507 0.00125161466883494 0.000718316959851276 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_87570298_87570306 ENSMUST00000122945.7 0 chr11:87568958+87583317 0 8 ACGAGGAG 1 87.4859661867 2.7717500627 0.196602891252 chr11_+_87570298_87570306|87.4859661867|2.7717500627 0.0324355486903901 IN ENSMUST00000122945 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_87766609_87766625 ENSMUST00000039627.11 36 chr11:87766488+87766716 36 16 AGAGCATCTGGAGCAG 1 78.3928043848 0.275350002851 1.89174897969e-10 chr11_+_87766609_87766625|78.3928043848|0.275350002851 1.12888809411515e-10 IN ENSMUST00000039627 Novel NA Excluded E1 6 -0.000710594222418185 0.00277969684859921 0.000899799873681763 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_87768800_87768821 ENSMUST00000039627.11 0 chr11:87768480+87769677 0 21 TCTACCTTGGATTCCATGCAG 1 77.0086285359 3.32923999369 2.66481947619e-10 chr11_+_87768800_87768821|77.0086285359|3.32923999369 1.9151213948021e-10 IN ENSMUST00000039627 Annotated NA Included I1 1 1.57882074715061e-05 -7.34980201219807e-05 -3.37159544120384e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_89015166_89015190 ENSMUST00000000284.6 229 chr11:89013538+89015532 229 24 AAGAAAAGAAGACCAAGAAAACCC 1 85.5879638228 0.76310717208 0 chr11_+_89015166_89015190|85.5879638228|0.76310717208 0 IN ENSMUST00000000284 Annotated NA Included I1 1 -1.30307698154563e-19 -3.26634964251608e-20 -1.571017408969e-19 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_9118630_9118660 ENSMUST00000020677.7 1 chr11:9118284+9119373 1 30 TGCTCCAGCGCGGCCAACGGGGACTGAGCG 1 83.6491163596 -0.0244411716566 0 chr11_+_9118630_9118660|83.6491163596|-0.0244411716566 0 IN ENSMUST00000020677 Annotated Alt5 Excluded E4 11 0.00330144249255712 0.000950308209530615 0.00605925024770573 TRUE TRUE TRUE FALSE FALSE FALSE chr11_+_94079198_94079210 ENSMUST00000041956.13 3332 chr11:94071686+94081339 3332 12 GGGAATATTCTG 1 74.8249176374 5.27231249213 2.24378639591e-06 chr11_+_94079198_94079210|74.8249176374|5.27231249213 1.95884212084163e-06 IN ENSMUST00000041956 Annotated NA Neuronal N6 15 0.0131550283960658 0.000671487307161246 0.0423772550600578 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_94080739_94080754 ENSMUST00000041956.13 260 chr11:94071686+94081339 260 15 ACCATAATTTCTTTG 1 73.3732075415 3.84021050052 3.50482871614e-08 chr11_+_94080739_94080754|73.3732075415|3.84021050052 3.27848053149893e-08 IN ENSMUST00000041956 Annotated NA Excluded E2 3 0.00605574583541731 0.0075726276009032 -0.0216409041092182 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_96046279_96046287 ENSMUST00000107700.3 119 chr11:96045302+96047194 119 8 AAAAACGG 1 83.5449147454 4.85383336743 0.000112050457396 chr11_+_96046279_96046287|83.5449147454|4.85383336743 2.83166605756779e-05 IN ENSMUST00000107700 Novel Alt3 Excluded E1 6 0.000415083714961679 7.9828877178475e-05 0.00130111184517443 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_96526042_96526068 ENSMUST00000103154.10 0 chr11:96489928+96541384 0 26 GTACTGTTGGGATTTTCAGCCCCAAG 1 88.6715098665 2.27709997681 1.14188658529e-11 chr11_+_96526042_96526068|88.6715098665|2.27709997681 1.78934644878836e-12 IN ENSMUST00000103154 Annotated NA Included I1 1 -5.07327715287995e-12 7.18334471401015e-11 7.06854926456759e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_97491643_97491666 ENSMUST00000121799.7 357 chr11:97491230+97493050 357 23 CGGACCTGTTGGAGATTTAAAGG 1 74.5424546137 2.54499998137 0 chr11_+_97491643_97491666|74.5424546137|2.54499998137 0 IN ENSMUST00000121799 Annotated NA Neuro-Muscular NM3 19 0.0601604947225791 -0.0388712064195656 -0.0518269600209092 TRUE TRUE TRUE 14.5 1 FALSE TRUE FALSE chr11_+_98350884_98350907 ENSMUST00000078694.12 0 chr11:98350629+98351265 0 23 AGGAGGAGGCCTCTCCACATCAG 1 83.5296884658 1.70340741481 8.65441052156e-12 chr11_+_98350884_98350907|83.5296884658|1.70340741481 2.19213536212237e-12 IN ENSMUST00000078694 Annotated Alt5 Included I2 10 0.00160122299156264 -0.00518986508236965 -0.00138421230334577 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_98671730_98671757 ENSMUST00000017348.2 0 chr11:98671365+98672294 0 27 AAAAGCCAGGAGAAGGGAAGTTCATAT 1 87.1486056923 0.988225801641 0 chr11_+_98671730_98671757|87.1486056923|0.988225801641 0 IN ENSMUST00000017348 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_98672294_98672315 ENSMUST00000017348.2 0 chr11:98671757+98672975 0 21 TGATCCAGGCATCTGATGTTG 1 84.5254733414 1.66151999742 2.71256794804e-10 chr11_+_98672294_98672315|84.5254733414|1.66151999742 5.96683813469667e-11 IN ENSMUST00000017348 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_+_98810458_98810486 ENSMUST00000017384.13 0 chr11:98810186+98810897,chr11:98810091+98810897 0 28 GAGAGTGAAGATGGCATGGAAGGAGATG 1 87.917998923 3.36893753288 0 chr11_+_98810458_98810486|87.917998923|3.36893753288 0 IN ENSMUST00000017384 Annotated Alt5 Included I1 1 -0.00129852722099908 0.000321245669220957 -0.00276064647426351 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_99043594_99043624 ENSMUST00000017637.12 34 chr11:99041845+99048225 34 30 CTGGTGGGCATCTAGCCCCAGGTGAAGATG 1 85.5675930632 0.185882356127 0 chr11_+_99043594_99043624|85.5675930632|0.185882356127 0 IN ENSMUST00000017637 Novel NA Excluded E1 6 -6.7061751701067e-05 -6.35470864271214e-05 -0.000255008636634816 TRUE FALSE FALSE FALSE FALSE FALSE chr11_+_99422362_99422378 ENSMUST00000128904.1 42 chr11:99422260+99422541 42 16 TTGGCCAGCTCAGCAG 1 77.2694433117 0.493399995752 2.37378117163e-10 chr11_+_99422362_99422378|77.2694433117|0.493399995752 1.65307323385377e-10 IN ENSMUST00000128904 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_-_100117982_100118005 ENSMUST00000007275.2 0 chr11:100117666-100118732 0 23 GATGACCGGCTTCAACTCCGGAG 1 89.5785610945 0.703666659348 1.47650780491e-11 chr11_-_100117982_100118005|89.5785610945|0.703666659348 2.28350671704902e-12 IN ENSMUST00000007275 Annotated Alt3 Included I1 1 0.0019981929522067 0.0212635395985484 -0.0067354202809946 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_100132597_100132623 ENSMUST00000107411.2 0 chr11:100132135-100132990 0 26 GATGGCTGGTATTGGTGTCAGAGAAG 1 90.6045568422 1.18939998124 1.83186799063e-13 chr11_-_100132597_100132623|90.6045568422|1.18939998124 2.8643754035329e-14 IN ENSMUST00000107411 Annotated NA Included I1 1 -2.00194018142562e-09 -1.15185053625315e-09 -6.57036726166526e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_100257319_100257345 ENSMUST00000080893.6 0 chr11:100256496-100257432 0 26 CCTGACTCAGTACAAGCCAAAAGAAC 1 88.704448349 1.67569998801 2.01172412062e-13 chr11_-_100257319_100257345|88.704448349|1.67569998801 3.15303338993544e-14 IN ENSMUST00000080893 Annotated NA Included I1 1 -1.5815949741709e-09 2.01981695225223e-09 -1.3927522775811e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_100351759_100351762 ENSMUST00000138603.8 1 chr11:100351552-100351842 1 3 CAA 1 52.9486553624 0.839999988675 0.017125145169 chr11_-_100351759_100351762|52.9486553624|0.839999988675 0.0171251451483356 IN ENSMUST00000138603 Novel NA Excluded E2 3 -0.000791582469420669 -0.0033588038836903 -0.00288863801924738 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_100503159_100503189 ENSMUST00000007131.15 674 chr11:100498762-100504202 674 30 ATTCAGTCCCAAGTCCAAGATCCCTGCAAG 1 85.7502738918 2.5844706332 0 chr11_-_100503159_100503189|85.7502738918|2.5844706332 0 IN ENSMUST00000007131 Annotated NA Other O1 4 -0.00164177580196685 -0.0162530356562651 0.00797274619185385 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_100898793_100898823 ENSMUST00000103114.7 0 chr11:100898701-100902736,chr11:100898701-100899215 0 30 AGACTCTGGGGATGTTGCTGCCCTCAGAGG 1 87.3349463522 3.1409706206 0 chr11_-_100898793_100898823|87.3349463522|3.1409706206 0 IN ENSMUST00000103114 Annotated NA Included I1 1 3.59950770484545e-118 6.72810271976091e-119 7.06230886786916e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_100907990_100908011 ENSMUST00000138438.1 0 chr11:100905928-100908659 0 21 ACGGCAGCCACGGCAGCCCAG 1 83.2814068861 3.39080002725 6.15273165749e-10 chr11_-_100907990_100908011|83.2814068861|3.39080002725 1.61872737436397e-10 IN ENSMUST00000138438 Annotated Alt5 Excluded E2 3 1.22610258717295e-05 -0.00108377557565517 0.000160556641220219 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_101294969_101294998 ENSMUST00000129863.1 0 chr11:101294228-101295034,chr11:101294147-101299053 0 29 GCGGAGAGATTGGACCAGGAGGAAGCTCA 1 62.4931158054 3.0355151029 0 chr11_-_101294969_101294998|62.4931158054|3.0355151029 0 IN ENSMUST00000129863 Annotated Alt5 Excluded E2 3 0.00033597528047336 -0.000191178276119068 0.00100018532232645 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_102010206_102010227 ENSMUST00000100400.8 0 chr11:102009684-102011719 0 21 ATGATCAGCCTTGTGACAAAG 1 77.4109337739 3.33651992559 4.57021087641e-10 chr11_-_102010206_102010227|77.4109337739|3.33651992559 3.12646797340221e-10 IN ENSMUST00000100400 Annotated NA Included I1 1 2.00591332579308e-07 -8.5903836031419e-07 -5.04529460094427e-07 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr11_-_102293066_102293095 ENSMUST00000137387.7 0 chr11:102292773-102293275 0 29 GGGAACTTAGCAACTCCGATCCTTTTAAG 1 94.2072119878 2.64630303825 0 chr11_-_102293066_102293095|94.2072119878|2.64630303825 0 IN ENSMUST00000137387 Annotated Alt5 Included I3 5 -0.0133348574871235 0.00156758732646189 -0.00783501703162456 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_102293645_102293668 ENSMUST00000141516.7 0 chr11:102293321-102293843,chr11:102293342-102293843 0 23 CCAAGAAGAGAAAATCAGACAAG 1 83.704048357 3.56114807104 6.73594513501e-12 chr11_-_102293645_102293668|83.704048357|3.56114807104 1.66233693477125e-12 IN ENSMUST00000141516 Annotated NA Included I1 1 -3.65817928331732e-46 5.56627902999609e-44 1.36074620304118e-44 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_102444171_102444191 ENSMUST00000152015.1 0 chr11:102443742-102447397 0 20 AGATCCTGATCAAGGTACAG 1 79.479705251 3.58445833096 3.30237526214e-09 chr11_-_102444171_102444191|79.479705251|3.58445833096 1.65742741753405e-09 IN ENSMUST00000152015 Annotated Alt3 Excluded E1 6 -0.000132063281785961 0.000801722633921533 -0.00149920428150281 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_102510231_102510261 ENSMUST00000143842.1 1 chr11:102508211-102528093 1 30 CATTATGATCCTGGACTTGTTGTGGTGATG 1 84.9425560117 5.46491185357 0 chr11_-_102510231_102510261|84.9425560117|5.46491185357 0 IN ENSMUST00000143842 Novel Alt3 Excluded E1 6 -0.000213622773317304 0.000425770753640318 0.000987420480673544 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_102531312_102531330 ENSMUST00000126804.7 654 chr11:102528166-102537111,chr11:102528166-102538281 434,220 18 CCCAGTTTTTAAAGCCAG 1 82.2451567052 6.30013645779 5.07213826495e-10 chr11_-_102531312_102531330|82.2451567052|6.30013645779 1.57849067150551e-10 IN ENSMUST00000126804 Annotated NA Excluded E3 2 0.00298752979165202 -0.000187622115023921 0.000961484197440524 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_102871019_102871041 ENSMUST00000138483.7 1 chr11:102870246-102877609 1 22 GAAGACACCCAGCCCCTCACAG 1 74.3512456875 4.48892305347 1.62914126633e-12 chr11_-_102871019_102871041|74.3512456875|4.48892305347 1.46116452270917e-12 IN ENSMUST00000138483 Novel Alt5 Excluded E3 2 -4.80351519099208e-06 -0.00108596645742681 0.000943408848414641 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_106180954_106180983 ENSMUST00000103072.9 33 chr11:106173781-106187124 33 29 AGCAGCCTCCGGGTGACACTCGGAGAAAA 1 85.17940925 4.50709094062 0 chr11_-_106180954_106180983|85.17940925|4.50709094062 0 IN ENSMUST00000103072 Annotated NA Neuronal N4 13 0.0424066136946233 0.0126391925649352 0.0532807805435491 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr11_-_106662001_106662024 ENSMUST00000080853.10 267 chr11:106655162-106671741,chr11:106655162-106679548 95,172 23 ATCTCATGGAAAACAGATACTCT 1 84.5983592285 1.90907409368 0 chr11_-_106662001_106662024|84.5983592285|1.90907409368 0 IN ENSMUST00000080853 Annotated Alt3 Other O1 4 0.00372310943052956 0.00798065146244852 0.00326174281548405 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_106683592_106683620 ENSMUST00000103069.9 0 chr11:106682953-106684227 0 28 CCAAACAGAAACCCGTGGAGATGTCCAG 1 84.1504096784 1.95259375754 0 chr11_-_106683592_106683620|84.1504096784|1.95259375754 0 IN ENSMUST00000103069 Annotated NA Included I1 1 -2.41138512013873e-106 -6.26380685978688e-107 -4.86041465767397e-106 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_106714901_106714928 ENSMUST00000103069.9 0 chr11:106699885-106715018 0 27 ATGCAAGCCTCCAGGCTGAGGAAAACT 1 86.4150857145 1.24719355159 0 chr11_-_106714901_106714928|86.4150857145|1.24719355159 0 IN ENSMUST00000103069 Annotated NA Included I1 1 1.25534103156859e-108 4.57959004077125e-109 1.6040185489711e-108 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_107320792_107320800 ENSMUST00000040380.12 0 chr11:107296270-107321586 0 8 AATACACT 1 72.0273218152 3.10883330057 0.320289141368 chr11_-_107320792_107320800|72.0273218152|3.10883330057 0.310203817131367 RESCUED ENSMUST00000040380 Annotated Alt3 Included I2 10 0.00331526780210853 0.000569952039446638 0.00420136228854705 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_109250026_109250056 ENSMUST00000020920.9 0 chr11:109249040-109259835 0 30 AAACAAACTGTCACTGCTGTCAGAAAAGAG 1 86.4522709823 1.90150001568 0 chr11_-_109250026_109250056|86.4522709823|1.90150001568 0 IN ENSMUST00000020920 Annotated NA Included I1 1 -3.58144672352414e-06 1.96991100769716e-05 7.25969820867442e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_112680921_112680950 ENSMUST00000151650.7 50 chr11:112672972-112691291,chr11:112677858-112691291 44,6 29 GTGTGTAGCAGTGCAGTTCACCTGATGAG 1 85.0477589005 None 0 chr11_-_112680921_112680950|85.0477589005|None 0 IN ENSMUST00000151650 Annotated NA FALSE FALSE TRUE FALSE FALSE FALSE chr11_-_113130658_113130677 ENSMUST00000136438.7 2 chr11:113067386-113172952 2 19 GCTCCCTCACGAGATTCTT 1 73.7516548221 -0.24878261127 1.49985623921e-09 chr11_-_113130658_113130677|73.7516548221|-0.24878261127 1.38310884967296e-09 IN ENSMUST00000136438 Novel NA Excluded E1 6 -0.000341670012406687 0.00180683430870439 0.000369240204988851 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_115118069_115118092 ENSMUST00000051264.13 0 chr11:115117686-115120263 0 23 CTGCTGGGCCACCATCAGAGCAG 1 84.9513948498 0.480185199598 3.62376795238e-11 chr11_-_115118069_115118092|84.9513948498|0.480185199598 7.55040474587076e-12 IN ENSMUST00000051264 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_-_115418294_115418297 ENSMUST00000106537.7 1 chr11:115417935-115418385 1 3 TAA 1 68.7640297133 -0.110428575959 0.0266771075731 chr11_-_115418294_115418297|68.7640297133|-0.110428575959 0.0265685774661448 IN ENSMUST00000106537 Novel NA Excluded E2 3 0.00124367542925486 0.0015378664452684 -0.00855954889311447 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_115500665_115500684 ENSMUST00000021083.6 0 chr11:115498299-115502004 0 19 GGAGAAGGTGATATGCATG 1 90.326582291 1.95486956316 1.33950378567e-08 chr11_-_115500665_115500684|90.326582291|1.95486956316 2.08497141773734e-09 IN ENSMUST00000021083 Annotated Alt5_3 Included I2 10 0.00135953533631592 -0.000860773091172657 0.00378522261623221 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_115532257_115532260 ENSMUST00000021084.9 6 chr11:115530417-115534555 6 3 ACA 1 64.5748347992 None 0.222867119117 chr11_-_115532257_115532260|64.5748347992|None 0.222829202884391 RESCUED ENSMUST00000021084 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_-_115588530_115588545 ENSMUST00000106508.9 10 chr11:115588003-115588855 10 15 GAAACAGTCACTGTG 1 71.9693169405 0.899736851258 3.03043634631e-09 chr11_-_115588530_115588545|71.9693169405|0.899736851258 2.93808821716368e-09 IN ENSMUST00000106508 Novel Alt3 Excluded E2 3 -0.00212004553269837 -0.0013708035221972 -0.0022935613480768 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_115617517_115617532 ENSMUST00000106503.9 1 chr11:115616651-115620876 1 15 ACGGAAAGCAAACAG 1 78.3240962297 1.13968423205 1.53013387516e-08 chr11_-_115617517_115617532|78.3240962297|1.13968423205 9.22502330080732e-09 IN ENSMUST00000106503 Novel Alt5 Excluded E1 6 0.000361987643520163 0.000289102717121225 0.000868145242313542 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_116164662_116164690 ENSMUST00000136318.7 0 chr11:116163359-116165831,chr11:116163359-116167551 0 28 GCACTGAGAACCAAGAAAGGATTGAAAG 1 85.8060000035 1.82481250138 0 chr11_-_116164662_116164690|85.8060000035|1.82481250138 0 IN ENSMUST00000136318 Annotated NA Included I1 1 1.87495137078795e-17 -8.67141396133665e-17 -5.51063060372977e-17 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_116167132_116167155 ENSMUST00000136318.7 4 chr11:116165912-116167551 4 23 CCTCCCAAGTGCTGGGATTGCAG 1 78.9644631409 0.0957407377384 0 chr11_-_116167132_116167155|78.9644631409|0.0957407377384 0 IN ENSMUST00000136318 Novel Alt5 Excluded E2 3 0.00193892737447446 -0.000306287574567225 0.00450309266913209 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_116179607_116179624 ENSMUST00000130229.7 1 chr11:116178844-116180290 1 17 TCTGAAATCAAGAGAAG 1 75.958498617 3.28761902491 3.24007487507e-10 chr11_-_116179607_116179624|75.958498617|3.28761902491 2.59618548881235e-10 IN ENSMUST00000130229 Novel Alt5 Excluded E1 6 0.000736946038076881 6.41497885452127e-05 0.00196178359663705 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_116179760_116179777 ENSMUST00000130229.7 1 chr11:116178844-116180290 1 17 GTGAAGCCTGACGGCAC 1 84.1954325097 3.93885711971 3.24007487507e-10 chr11_-_116179760_116179777|84.1954325097|3.93885711971 7.4525496884803e-11 IN ENSMUST00000130229 Novel Alt3 Excluded E2 3 0.000487509490641585 -0.0011477757242878 -0.000218220546463914 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_116246219_116246248 ENSMUST00000127205.7 0 chr11:116245930-116254301 0 29 ACACCTCATCCCAAGTCAAAGACAATACG 1 78.6670500513 1.89018181852 0 chr11_-_116246219_116246248|78.6670500513|1.89018181852 0 IN ENSMUST00000127205 Annotated Alt5 Excluded E3 2 0.000771174099333529 -0.000493050648473476 0.00180473981293708 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_116807950_116807968 ENSMUST00000021170.8 1 chr11:116804654-116811922 1 18 AACTGAAGAATAATGAAG 1 80.4441398728 2.84286361899 4.11887413065e-10 chr11_-_116807950_116807968|80.4441398728|2.84286361899 1.7519863337867e-10 IN ENSMUST00000021170 Novel Alt3 Excluded E2 3 -0.00287849385641909 -0.00164251107524794 0.00386735440246737 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_118180201_118180204 ENSMUST00000100181.10 394 chr11:118177296-118182219 394 3 GAG 1 78.2313574836 4.73328569957 0.259224734611 chr11_-_118180201_118180204|78.2313574836|4.73328569957 0.158436523433556 RESCUED ENSMUST00000100181 Missing in GENCODE NA Muscular M2 20 -0.0201975870669912 -0.0313980186424644 0.125305198448448 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_11824848_11824868 ENSMUST00000066237.9 0 chr11:11822293-11829101 0 20 GATTCATCACTGACTACAGG 1 91.4362707865 3.11395838802 6.17001205683e-09 chr11_-_11824848_11824868|91.4362707865|3.11395838802 9.97688820447706e-10 IN ENSMUST00000066237 Annotated NA Included I1 1 8.22969814526201e-54 -2.06806083991002e-54 3.36366448352652e-54 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_120108466_120108490 ENSMUST00000045402.13 102 chr11:120106610-120109431 102 24 CTGAAATTAAAAAGCTAGTAGCAG 1 70.6543671473 2.83803571794 0 chr11_-_120108466_120108490|70.6543671473|2.83803571794 0 IN ENSMUST00000045402 Annotated Alt5 Neuronal N1 18 0.0637693466202856 0.0126718996574939 -0.000442566313591 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE TRUE FALSE chr11_-_120730617_120730626 ENSMUST00000154565.1 0 chr11:120730523-120731005 0 9 GTATCCCAG 1 85.7771701997 1.53607692856 0.00178746970073 chr11_-_120730617_120730626|85.7771701997|1.53607692856 0.000339186566433614 IN ENSMUST00000154565 Annotated Alt5 Excluded E2 3 -0.000879137457724053 -0.00357396560337033 -0.000866177848727909 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_20098736_20098751 ENSMUST00000000137.7 2283 chr11:20094445-20100822 2283 15 AATAACAAAAAGATG 1 76.6067376184 4.98068421765 2.31302690334e-08 chr11_-_20098736_20098751|76.6067376184|4.98068421765 1.73893276445014e-08 IN ENSMUST00000000137 Novel NA Excluded E3 2 0.00697122402987729 -0.0101239854788432 0.0185959638092723 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_20098736_20098754 ENSMUST00000000137.7 179 chr11:20094445-20100822 179 18 TAGAATAACAAAAAGATG 1 78.9081846018 5.07986364581 3.6123992686e-10 chr11_-_20098736_20098754|78.9081846018|5.07986364581 1.99050997906625e-10 IN ENSMUST00000000137 Novel NA Excluded E1 6 0.00071855798349331 -0.00136641384640209 0.00320808441085405 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_20696750_20696776 ENSMUST00000035350.11 9 chr11:20692588-20698312 9 26 TAGCTCTAGCAGCAGCACAATCCCAG 1 74.4909752874 3.80813336174 0 chr11_-_20696750_20696776|74.4909752874|3.80813336174 0 IN ENSMUST00000035350 Novel Alt5 Excluded E1 6 0.00261696898232232 0.00155483080150234 0.00197270962397606 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_23583097_23583126 ENSMUST00000155903.7 0 chr11:23582940-23584519 0 29 TCAACTTCTAGAGATGTGTCTCCTTTTGT 1 82.9927290544 2.94378787189 0 chr11_-_23583097_23583126|82.9927290544|2.94378787189 0 IN ENSMUST00000155903 Annotated NA Included I1 1 -1.63825670278124e-70 3.26900362555197e-70 4.10625563939202e-70 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_29764949_29764958 ENSMUST00000058902.5 279 chr11:29764126-29777002 279 9 GGGATCCAG 1 83.9402801145 3.8066153095 0.000191655269646 chr11_-_29764949_29764958|83.9402801145|3.8066153095 4.56981991050487e-05 IN ENSMUST00000058902 Missing in GENCODE NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_-_29810143_29810167 ENSMUST00000058902.5 10 chr11:29809407-29818341 10 24 GGATTCGTGTGGAGAAAAAGACAA 1 79.1860900996 0.137857153313 0 chr11_-_29810143_29810167|79.1860900996|0.137857153313 0 IN ENSMUST00000058902 Novel NA Excluded E3 2 -6.0694036355998e-05 -0.0210434875781621 0.0176493830152495 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_30633685_30633702 ENSMUST00000074613.3 0 chr11:30632317-30649300 0 17 GTGTTTGCTTCAGAATG 1 86.9169314606 3.40600001812 9.87317857026e-07 chr11_-_30633685_30633702|86.9169314606|3.40600001812 1.69229687152495e-07 IN ENSMUST00000074613 Annotated NA Included I1 1 -3.42613025720917e-89 4.17540415374317e-89 -1.10566090856286e-88 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_3262643_3262664 ENSMUST00000166162.7 1 chr11:3259375-3264766 1 21 GTTTTGATGTGGCCAAGACAG 1 82.7338477744 4.20188003421 4.76596540011e-12 chr11_-_3262643_3262664|82.7338477744|4.20188003421 1.36790578864066e-12 IN ENSMUST00000166162 Novel Alt3 Excluded E2 3 -0.000521937812987606 5.56991190889752e-05 -0.00119401281742788 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_33158908_33158911 ENSMUST00000075641.9 294 chr11:33157048-33159933 294 3 TGA 1 60.3207987216 None 0.161100647185 chr11_-_33158908_33158911|60.3207987216|None 0.161100046420816 RESCUED ENSMUST00000075641 Novel NA Excluded E3 2 -0.00323531085200984 -0.000326572542752667 -0.00826048900836071 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_3352899_3352915 ENSMUST00000101638.3 19 chr11:3352377-3353276 19 16 CTGGGAGGGGGGTCAG 1 81.0048191348 1.90109999329 7.99445842858e-10 chr11_-_3352899_3352915|81.0048191348|1.90109999329 3.08239433977064e-10 IN ENSMUST00000101638 Novel NA Excluded E1 6 0.00176317972798323 0.000379751118183309 0.00300672381129261 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_3352899_3352917 ENSMUST00000101638.3 726 chr11:3352377-3353276 726 18 AGCTGGGAGGGGGGTCAG 1 80.3009921285 1.78609090298 4.98516783409e-11 chr11_-_3352899_3352917|80.3009921285|1.78609090298 2.17404982905123e-11 IN ENSMUST00000101638 Annotated NA Neuronal N6 15 0.018680169336991 0.00525886559527497 0.0237823283704322 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_3370968_3370980 ENSMUST00000101638.3 1 chr11:3360586-3392916 1 12 AGACCCCTTTAG 1 84.7394008435 2.61068750173 7.523661117e-06 chr11_-_3370968_3370980|84.7394008435|2.61068750173 1.60972107610124e-06 IN ENSMUST00000101638 Novel NA Excluded E3 2 0.013958874493619 0.00179089145445581 -0.000299307848280043 TRUE TRUE TRUE 14.5 1 TRUE FALSE FALSE chr11_-_3428883_3428902 ENSMUST00000064364.2 0 chr11:3426678-3452208,chr11:3426678-3432399 0 19 TTGGCCGTGTTTACATCAG 1 77.3990565852 4.66286953636 2.07292030208e-08 chr11_-_3428883_3428902|77.3990565852|4.66286953636 1.42022755778015e-08 IN ENSMUST00000064364 Annotated NA Included I1 1 -3.27094212794553e-97 2.13038245488378e-97 2.83203525940404e-97 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_36054925_36054946 ENSMUST00000102801.7 0 chr11:36052022-36063088 0 21 AAATAAAGAGTTTAAACATAG 1 84.5866546735 4.90671996593 2.51043275057e-09 chr11_-_36054925_36054946|84.5866546735|4.90671996593 5.478042464091e-10 IN ENSMUST00000102801 Annotated NA Included I1 1 2.77111213210062e-05 -0.000128054818087881 -6.09744542444277e-05 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr11_-_41913969_41913993 ENSMUST00000070725.10 7939 chr11:41912591-41916283 7939 24 CTTCTTCGGATGTTTTCCTTCAAG 1 68.422595067 4.99867864166 0 chr11_-_41913969_41913993|68.422595067|4.99867864166 0 IN ENSMUST00000070725 Annotated NA Excluded E3 2 0.0133511122261166 -0.0554282683579571 0.0220543688986851 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_4484670_4484697 ENSMUST00000109943.9 53 chr11:4482939-4485362 53 27 GGACACTGACTGTGTCGATCAAACGTG 1 83.3662390154 2.75790320096 0 chr11_-_4484670_4484697|83.3662390154|2.75790320096 0 IN ENSMUST00000109943 Annotated NA Excluded E2 3 -0.00183740104914576 -0.0264127804071173 0.00508271230672371 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_4799978_4799995 ENSMUST00000164190.7 1 chr11:4794917-4803677 1 17 AATAAAAAGGGCACAGA 1 69.3472894443 3.34504757183 1.9870185497e-09 chr11_-_4799978_4799995|69.3472894443|3.34504757183 1.97502414422956e-09 IN ENSMUST00000164190 Novel Alt3 Excluded E1 6 0.000377510981056429 -0.000290769781944316 0.00175715885155468 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_48808464_48808487 ENSMUST00000047145.13 0 chr11:48808252-48809049 0 23 GACATCAAGGAGACTTTCAATAG 1 83.8427076289 2.59196293906 1.09423581307e-11 chr11_-_48808464_48808487|83.8427076289|2.59196293906 2.6461055568916e-12 IN ENSMUST00000047145 Annotated Alt3 Included I3 5 0.00581130023992606 -0.00503405946850586 0.00862119912941889 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_49170596_49170623 ENSMUST00000046522.12 0 chr11:49169664-49173211,chr11:49169691-49173211 0 27 AGTGGAGAGCAGCCCAGCAATATGCAG 1 90.6772010424 1.27700001158 0 chr11_-_49170596_49170623|90.6772010424|1.27700001158 0 IN ENSMUST00000046522 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_-_49173452_49173473 ENSMUST00000046522.12 0 chr11:49173238-49174825,chr11:49170623-49174825 0 21 AGAAACTTCAGACAGAGCTTG 1 87.3263146744 1.34176001385 3.55157681042e-10 chr11_-_49173452_49173473|87.3263146744|1.34176001385 5.91737769894962e-11 IN ENSMUST00000046522 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr11_-_5080468_5080471 ENSMUST00000079949.12 13 chr11:5079519-5082252 13 3 GAG 1 66.9511011656 2.81557141032 0.153281436221 chr11_-_5080468_5080471|66.9511011656|2.81557141032 0.153111719006964 RESCUED ENSMUST00000079949 Novel NA Other O1 4 -0.000785043095456503 0.00147720224768517 0.00041527431953831 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_5091459_5091474 ENSMUST00000079949.12 252 chr11:5088146-5091858 252 15 AAGGGACCAGTACAG 1 74.0668836947 2.85352632247 1.34350556236e-08 chr11_-_5091459_5091474|74.0668836947|2.85352632247 1.22199904639686e-08 IN ENSMUST00000079949 Missing in GENCODE NA Excluded E1 6 0.00541647120396427 0.0013163482753493 0.00808644050726606 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_5091459_5091477 ENSMUST00000079949.12 933 chr11:5088146-5091858 933 18 TAGAAGGGACCAGTACAG 1 77.9662959223 2.95054546811 2.09752215596e-10 chr11_-_5091459_5091477|77.9662959223|2.95054546811 1.33176469852003e-10 IN ENSMUST00000079949 Annotated Alt3 Neuronal N6 15 0.0238156813246051 0.00683430928787253 0.0298264455369638 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_5092417_5092420 ENSMUST00000079949.12 1 chr11:5091982-5093680 1 3 CTT 1 59.3318846616 0.762285718428 0.0980656994318 chr11_-_5092417_5092420|59.3318846616|0.762285718428 0.0980655613200538 IN ENSMUST00000079949 Novel NA Excluded E2 3 -0.000383968254646494 0.000228268447560659 -0.00101427994241032 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_51601884_51601890 ENSMUST00000074669.9 2 chr11:51601478-51602592 2 6 GTCAGA 1 74.9262190078 3.64199998379 0.00105230288794 chr11_-_51601884_51601890|74.9262190078|3.64199998379 0.000912797269037369 IN ENSMUST00000074669 Novel Alt3 Excluded E1 6 -6.21137781045545e-05 1.85917481469142e-05 -6.46659100337501e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_51995373_51995399 ENSMUST00000020657.12 0 chr11:51949916-52120691,chr11:51991483-51997817 0 26 ACCAGAAGGGACACCCTTTGAAGATG 1 90.535261733 5.16253338543 1.39976918945e-12 chr11_-_51995373_51995399|90.535261733|5.16253338543 2.18824958153618e-13 IN ENSMUST00000020657 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_54853433_54853450 ENSMUST00000148070.7 5 chr11:54853299-54860551 5 17 GCACACGAGGGTCACAG 1 80.4332639588 -0.0545238107443 1.64413904713e-09 chr11_-_54853433_54853450|80.4332639588|-0.0545238107443 7.00672964093485e-10 IN ENSMUST00000148070 Novel NA Excluded E2 3 0.00235521537057194 -0.00383818778947628 -0.00552463862949189 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_54987050_54987068 ENSMUST00000102727.2 4908 chr11:54986215-54991390 4908 18 GTGGCTGCTGAGATCTTG 1 82.1791416335 2.82859084281 2.9291413739e-10 chr11_-_54987050_54987068|82.1791416335|2.82859084281 9.21778209317381e-11 IN ENSMUST00000102727 Annotated NA Included I3 5 0.00381353316557249 -0.00556635447427458 -0.000382747975655807 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_55450618_55450625 ENSMUST00000138412.1 1 chr11:55446784-55454880 1 7 GAGTGGA 1 67.8651267892 2.25445454872 0.00192575778627 chr11_-_55450618_55450625|67.8651267892|2.25445454872 0.00192159039191919 IN ENSMUST00000138412 Novel Alt3 Excluded E1 6 0.000178927618450194 -3.22707078976148e-05 0.000599076734424004 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_5726830_5726857 ENSMUST00000093362.11 0 chr11:5723161-5741096,chr11:5726418-5761880,chr11:5726410-5761848,chr11:5726418-5741096,chr11:5726418-5732064,chr11:5726425-5761864 0 27 GATAGAAGTGGAATTACTGGTCAAAGG 1 86.1343490263 1.42790324025 0 chr11_-_5726830_5726857|86.1343490263|1.42790324025 0 IN ENSMUST00000093362 Annotated NA Included I1 1 -6.37287274268033e-83 4.52071268753114e-83 7.8475847195757e-83 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_59445273_59445300 ENSMUST00000132969.7 45 chr11:59438513-59449914,chr11:59442841-59449914,chr11:59442912-59449914 18,7,20 27 AAGAAACATCTGTTAATTATATTTAAG 1 76.393914971 0.168290320904 0 chr11_-_59445273_59445300|76.393914971|0.168290320904 0 IN ENSMUST00000132969 Novel NA Excluded E1 6 -0.00010135254807937 0.000219575559841541 0.000181705163014962 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_62276617_62276639 ENSMUST00000072916.4 0 chr11:62273814-62281256 0 22 TTCCCGACGAGCTTCTCTTATC 1 81.1068110394 1.70107689554 4.21550794272e-10 chr11_-_62276617_62276639|81.1068110394|1.70107689554 1.5965651023464e-10 IN ENSMUST00000072916 Annotated NA Included I1 1 6.18240629419397e-110 -4.36350454733731e-111 4.33817471299143e-110 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_62403435_62403462 ENSMUST00000101066.9 390 chr11:62401267-62403798 390 27 TGGAGTACCTGCAAGGCGCATGATGAA 1 83.1566618788 2.86400004356 0 chr11_-_62403435_62403462|83.1566618788|2.86400004356 0 IN ENSMUST00000101066 Annotated Alt3 Other O2 21 -0.0022366511779989 0.00535724539011856 -0.00784339448946677 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_6267319_6267326 ENSMUST00000151446.1 1 chr11:6266917-6267417 1 7 GTCCTGT 1 75.9523528624 -0.513727268966 0.000116579903114 chr11_-_6267319_6267326|75.9523528624|-0.513727268966 9.34638754058748e-05 IN ENSMUST00000151446 Novel NA Excluded E2 3 0.00604251549604277 0.00522835640511782 -0.00567220485821006 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_62787746_62787770 ENSMUST00000152602.7 7 chr11:62784993-62787958,chr11:62785009-62787958 6,1 24 TATTTCTTGTCTCTCTACAGGCAG 1 86.7913232856 0.227607134813 0 chr11_-_62787746_62787770|86.7913232856|0.227607134813 0 IN ENSMUST00000152602 Novel NA Excluded E2 3 0.00545966907461876 -0.0146859725930214 0.00785137743089465 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_65012906_65012924 ENSMUST00000047463.14 332 chr11:65012098-65021940 332 18 CCTTAGGAAAATCCAAAG 1 78.9604235157 5.56818173148 5.58202373213e-10 chr11_-_65012906_65012924|78.9604235157|5.56818173148 3.05027669789126e-10 IN ENSMUST00000047463 Annotated NA Neuronal N6 15 0.00606444932082743 0.00164890929084853 0.0373640543358622 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_65739592_65739615 ENSMUST00000138093.1 15 chr11:65735366-65745551 15 23 TTTGCAGACTTTCATGTGACAAG 1 84.3359907507 0.172333327984 0 chr11_-_65739592_65739615|84.3359907507|0.172333327984 0 IN ENSMUST00000138093 Novel NA Excluded E1 6 -0.000371566559298023 0.00088393644253661 0.0013889566403393 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_69003191_69003211 ENSMUST00000021282.11 308 chr11:69002615-69003695 308 20 GTTGTCACACTTGACTACAG 1 71.5813402876 None 3.75166564481e-12 chr11_-_69003191_69003211|71.5813402876|None 3.66018326758422e-12 IN ENSMUST00000021282 Missing in GENCODE NA Neuronal N6 15 0.0147362701850806 -0.000335962074937263 0.035930210106389 TRUE TRUE FALSE FALSE FALSE FALSE chr11_-_69919448_69919478 ENSMUST00000108613.9 93 chr11:69919336-69920340,chr11:69919336-69920800,chr11:69919336-69921023,chr11:69919336-69921162 19,15,6,53 30 TTTCAAAGCAGGAAATGCAACTTTATTTAG 1 80.7655835534 0.239264704671 0 chr11_-_69919448_69919478|80.7655835534|0.239264704671 0 IN ENSMUST00000108613 Annotated NA Excluded E1 6 -1.8862492663116e-05 8.17730000341457e-05 0.000399818505770964 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_69920340_69920358 ENSMUST00000108613.9 4 chr11:69919336-69920800,chr11:69919336-69921162 3,1 18 TGAGACGTCCAGCCAGAT 1 77.2096775747 0.645454547072 8.19682099973e-11 chr11_-_69920340_69920358|77.2096775747|0.645454547072 5.750400156046e-11 IN ENSMUST00000108613 Novel Alt5 Excluded E1 6 0.000187685671347736 0.000126239804316505 9.57463318324111e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_70014792_70014811 ENSMUST00000018718.7 6 chr11:70014703-70015116 6 19 AGAAAAACCAGCCAGGGCA 1 75.4745377072 0.638565218117 5.54223333893e-12 chr11_-_70014792_70014811|75.4745377072|0.638565218117 4.62418991986624e-12 IN ENSMUST00000018718 Novel Alt5 Excluded E2 3 0.000416515465407104 0.000530563391933363 0.0015739643455451 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_70670890_70670911 ENSMUST00000145823.7 1161 chr11:70670736-70671007 1161 21 CTGACCTGGATTGCACTTAAG 1 76.0755786944 3.69007995132 2.18491891246e-13 chr11_-_70670890_70670911|76.0755786944|3.69007995132 1.73194791841524e-13 IN ENSMUST00000145823 Annotated NA Neuronal N1 18 0.0799943113891242 0.0406513379706828 -0.00671391361891196 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr11_-_72262022_72262040 ENSMUST00000140167.2 0 chr11:72261749-72266463 0 18 GTTCTGGACTCCAAGCAG 1 85.4275527229 2.33713635057 6.827758392e-08 chr11_-_72262022_72262040|85.4275527229|2.33713635057 1.34532854856317e-08 IN ENSMUST00000140167 Annotated Alt5 Excluded E2 3 0.0023309934670268 -0.00359810702025291 -0.00380470263618085 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_74438263_74438280 ENSMUST00000145524.1 1 chr11:74437463-74441749 1 17 GACCCCAGAAGAACAAG 1 67.32215973 3.03552380062 9.69748725765e-10 chr11_-_74438263_74438280|67.32215973|3.03552380062 9.68334523676617e-10 IN ENSMUST00000145524 Novel Alt5 Excluded E1 6 0.0010977247836359 -0.000972177770576914 0.00179221443275083 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_76077092_76077122 ENSMUST00000166752.7 0 chr11:76076513-76081146 0 30 CTAGAAGAAAAACTCAAAGAAAAAGTTGAT 1 80.1514914693 3.90358825379 0 chr11_-_76077092_76077122|80.1514914693|3.90358825379 0 IN ENSMUST00000166752 Annotated Alt3 Excluded E2 3 -0.000264516466392607 -0.000282583316932484 -0.00111323528828213 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_76163948_76163967 ENSMUST00000056601.10 18 chr11:76163864-76166198 18 19 ACGCAGCCTGGAAAGGTCG 1 74.1292734617 -0.0148260799925 3.28412852468e-11 chr11_-_76163948_76163967|74.1292734617|-0.0148260799925 2.97833979701068e-11 IN ENSMUST00000056601 Novel NA Excluded E1 6 0.00021184870948559 0.000109617146101792 8.71188807686722e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_76163952_76163967 ENSMUST00000056601.10 143 chr11:76163864-76166198 143 15 ACGCAGCCTGGAAAG 1 73.4540345722 -0.0978947280857 8.42192093842e-09 chr11_-_76163952_76163967|73.4540345722|-0.0978947280857 7.85555631654944e-09 IN ENSMUST00000056601 Novel NA Excluded E1 6 0.00478902147821252 0.00222395506564139 0.00107401658299404 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_76737381_76737411 ENSMUST00000010536.8 0 chr11:76734651-76748507 0 30 CTCTGATCGTCTGATAGAAGAAACAATAAG 1 87.0168172359 4.0057058869 0 chr11_-_76737381_76737411|87.0168172359|4.0057058869 0 IN ENSMUST00000010536 Annotated NA Included I1 1 -1.03327808193475e-115 -1.29362643234545e-116 -1.66195561305922e-115 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_77471869_77471878 ENSMUST00000037593.13 2 chr11:77471823-77472301 2 9 GTGTCCCAG 1 76.1537816951 -0.00323077490052 6.92901600097e-06 chr11_-_77471869_77471878|76.1537816951|-0.00323077490052 5.4527927586534e-06 IN ENSMUST00000037593 Novel Alt3 Excluded E2 3 0.00565432897305556 -0.0120675680520995 -0.0230613604231415 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_77601698_77601715 ENSMUST00000058496.7 1 chr11:77585494-77607207 1 17 ATTTCCTGTTACGAAAT 1 75.1076914015 0.407476188171 4.93218976771e-09 chr11_-_77601698_77601715|75.1076914015|0.407476188171 4.2269808764317e-09 IN ENSMUST00000058496 Novel NA Excluded E4 11 0.00237704982293399 -0.0119855092789436 0.0215708111177882 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_79043195_79043200 ENSMUST00000018478.10 0 chr11:79040937-79044844 0 5 GTTTG 1 88.6184423115 2.02755553027 0.97748726805 chr11_-_79043195_79043200|88.6184423115|2.02755553027 0.153403433341132 RESCUED ENSMUST00000018478 Annotated NA Included I1 1 1.95118517528869e-09 -5.60037064347368e-09 -4.40191304378951e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_80059367_80059377 ENSMUST00000177825.7 1 chr11:80058014-80060097 1 10 CTTACCAGAA 1 73.9108229604 4.22292858256 7.70759593816e-06 chr11_-_80059367_80059377|73.9108229604|4.22292858256 7.06001476036278e-06 IN ENSMUST00000177825 Novel Alt3 Excluded E1 6 0.000396405456000664 -0.000168491816786549 0.000339549685309826 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_82808512_82808536 ENSMUST00000093975.11 0 chr11:82807537-82810007,chr11:82806189-82810007 0 24 TGTCTGGTAATGAAGACCAAAACG 1 87.5811218025 1.57310713295 8.67572680363e-12 chr11_-_82808512_82808536|87.5811218025|1.57310713295 1.42341693987191e-12 IN ENSMUST00000093975 Annotated NA Included I1 1 -3.28730115909025e-31 -1.65284102406661e-30 -1.57635347565261e-31 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_8435715_8435742 ENSMUST00000020695.12 0 chr11:8434638-8435845 0 27 GTGGATCAAAGATGGCCCTTCTTCTAA 1 80.6457758658 2.16751613324 0 chr11_-_8435715_8435742|80.6457758658|2.16751613324 0 IN ENSMUST00000020695 Annotated NA Included I1 1 -1.33646699383103e-45 -6.78606343070478e-46 1.27811666195876e-45 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_84839980_84840006 ENSMUST00000170741.1 0 chr11:84837988-84840040,chr11:84837988-84870689 0 26 ACGAGAAAGCAGTGAGCCGAGAGAAG 1 77.9881858571 2.66476665686 4.48974191158e-13 chr11_-_84839980_84840006|77.9881858571|2.66476665686 2.8421709430404e-13 IN ENSMUST00000170741 Annotated Alt5 Excluded E2 3 0.000362692686612594 -0.000394854546238705 0.00230425120048743 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_86701060_86701081 ENSMUST00000103186.10 682 chr11:86697340-86702208 682 21 GTTGATGCAATAAAGGAAAAG 1 82.4902618274 4.85144005299 4.30144808661e-12 chr11_-_86701060_86701081|82.4902618274|4.85144005299 1.28497212870116e-12 IN ENSMUST00000103186 Annotated Alt3 Excluded E3 2 0.00526273733525498 -0.0469773596854769 -0.00255767225866404 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_86713424_86713436 ENSMUST00000103186.10 138 chr11:86712706-86717897 138 12 GACATGTATCAG 1 76.9494842797 4.3322499916 1.20489785516e-06 chr11_-_86713424_86713436|76.9494842797|4.3322499916 8.71915656563971e-07 IN ENSMUST00000103186 Missing in GENCODE NA Excluded E1 6 0.000707971523533801 0.000492066737431907 -0.000543821360120652 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_86735185_86735188 ENSMUST00000103186.10 378 chr11:86733844-86737070 378 3 ATG 1 83.3991774978 5.67500012262 0.178380728078 chr11_-_86735185_86735188|83.3991774978|5.67500012262 0.0460873186391683 IN ENSMUST00000103186 Missing in GENCODE NA Excluded E1 6 0.00132749113015515 -0.000232407194262874 0.00514317080160504 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_88368211_88368235 ENSMUST00000107909.7 139 chr11:88366847-88386044 139 24 CCCTATTACCATATTTAAATGCAA 1 78.5655069939 4.36360716394 0 chr11_-_88368211_88368235|78.5655069939|4.36360716394 0 IN ENSMUST00000107909 Missing in GENCODE NA Excluded E3 2 0.0117005593959748 0.0091757324793504 -0.0134717923929539 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_94416625_94416655 ENSMUST00000146160.1 0 chr11:94416527-94416840 0 30 CTCTGGGCGTGGAGCTCTTTGGAGACCTGG 1 84.5916610466 4.21049995446 0 chr11_-_94416625_94416655|84.5916610466|4.21049995446 0 IN ENSMUST00000146160 Annotated Alt5 Excluded E3 2 -0.000596834079022929 -0.00140092809566278 -0.00525884784332442 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_94969058_94969085 ENSMUST00000103162.7 0 chr11:94963399-94969353 0 27 GCTGAAGAGAGACATGGCCACCTCTGA 1 81.2964662636 2.32200000603 0 chr11_-_94969058_94969085|81.2964662636|2.32200000603 0 IN ENSMUST00000103162 Annotated NA Included I1 1 -3.72155637862839e-05 7.81331918866646e-06 -0.000129857012487962 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_97542533_97542557 ENSMUST00000126287.1 234 chr11:97537239-97548879 234 24 CAACCAAACTACTGGAGTTTCAAG 1 84.4934325534 4.05024998741 0 chr11_-_97542533_97542557|84.4934325534|4.05024998741 0 IN ENSMUST00000126287 Annotated NA Included I2 10 -0.00108528786672059 -0.00702543659372049 0.0103133805165608 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_98010626_98010646 ENSMUST00000103144.9 13 chr11:98010376-98011342 13 20 CCAAACAGAAGCAGAAATCG 1 76.7786806398 4.86512509733 3.34665628543e-12 chr11_-_98010626_98010646|76.7786806398|4.86512509733 2.46924702906881e-12 IN ENSMUST00000103144 Annotated NA Neuronal N2 8 0.0716845850646718 0.0403092988895536 -0.0214872928763425 TRUE TRUE TRUE 13.5 1 12.5 1 TRUE FALSE FALSE chr11_-_98179111_98179140 ENSMUST00000092735.11 0 chr11:98173292-98180016,chr11:98173292-98179947 0 29 AGCTGTCCAGAGCTTGTACAGCAGTTAAG 1 88.8790499271 3.29706055287 0 chr11_-_98179111_98179140|88.8790499271|3.29706055287 0 IN ENSMUST00000092735 Annotated NA Included I1 1 8.1281703015731e-116 5.43193242555106e-117 1.2464544293792e-115 TRUE FALSE FALSE FALSE FALSE FALSE chr11_-_99070401_99070428 ENSMUST00000017751.2 0 chr11:99068322-99070652 0 27 GTGGCAGAAGTACTGCAAGCCTTCCAG 1 91.8675094084 2.7007419336 0 chr11_-_99070401_99070428|91.8675094084|2.7007419336 0 IN ENSMUST00000017751 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr12_+_102227063_102227089 ENSMUST00000159329.7 0 chr12:102223681+102228895 0 26 TTCATATACGATGAGGAAATTGTGTG 1 83.617041045 3.58336666251 1.15107923193e-12 chr12_+_102227063_102227089|83.617041045|3.58336666251 2.87769807982841e-13 IN ENSMUST00000159329 Annotated NA Included I1 1 1.48401903138061e-09 -1.79976082796963e-08 -1.46551732219895e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_103049894_103049923 ENSMUST00000101099.11 0 chr12:103047698+103059318 0 29 CTGAAATATCTGCTATATGTCAGAAAAAG 1 90.2085009389 5.35281820008 0 chr12_+_103049894_103049923|90.2085009389|5.35281820008 0 IN ENSMUST00000101099 Annotated NA Included I1 1 -8.3521698659245e-06 3.76480192191966e-05 1.75988053091711e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_103437675_103437705 ENSMUST00000076702.11 462 chr12:103436682+103439400,chr12:103437524+103439400 128,334 30 CCAAGGCTGTTGTGGCTGTGCTTGGGGGAG 1 90.7337212686 0.103735288167 0 chr12_+_103437675_103437705|90.7337212686|0.103735288167 0 IN ENSMUST00000076702 Annotated Alt5 Included I2 10 -0.000167709972024402 0.00172913639659056 -0.00047329594015166 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_108502389_108502418 ENSMUST00000138456.7 0 chr12:108488420+108506478,chr12:108488420+108503182 0 29 CAAACCCAAGGAGCCCGCATTCAGTCCAG 1 87.8537447136 4.14612116461 0 chr12_+_108502389_108502418|87.8537447136|4.14612116461 0 IN ENSMUST00000138456 Annotated NA Included I1 1 -2.0138766396775e-66 2.02629042633619e-66 5.83300359941666e-66 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_109548563_109548572 ENSMUST00000143847.7 6 chr12:109546542+109549290,chr12:109546542+109549518 1,5 9 CCTCCCTCT 1 71.1439213843 -0.391923077619 4.07538457083e-05 chr12_+_109548563_109548572|71.1439213843|-0.391923077619 3.99862054443201e-05 IN ENSMUST00000143847 Novel NA Excluded E1 6 0.000127239589813127 -4.01533595827008e-05 0.000817652694579509 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_109566028_109566033 ENSMUST00000143836.7 3 chr12:109558320+109571390 3 5 GTGTG 1 66.8458982768 -0.167333333443 0.0486030074029 chr12_+_109566028_109566033|66.8458982768|-0.167333333443 0.0485532775087693 IN ENSMUST00000143836 Novel NA Excluded E1 6 -0.000304960041288151 -0.000766545996413865 0.00167961224915789 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_109652700_109652715 ENSMUST00000181253.8 3721 chr12:109651938+109654285 3721 15 AATGGATACCCCAAG 1 86.9971024839 0.100684205952 8.46921466291e-09 chr12_+_109652700_109652715|86.9971024839|0.100684205952 1.44311262939567e-09 IN ENSMUST00000181253 Annotated NA Included I2 10 -0.00548717692347209 0.103235817042189 0.00912134012371667 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_111539407_111539426 ENSMUST00000222375.1 3 chr12:111538548+111539546 3 19 AGCTGTTGCGCAGCCATTG 1 81.2298297112 4.83721734907 1.38555833473e-11 chr12_+_111539407_111539426|81.2298297112|4.83721734907 5.13578068961351e-12 IN ENSMUST00000222375 Novel Alt3 Excluded E1 6 -0.000177651759922419 0.000149838055823703 -0.000286102385252812 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_111651957_111651984 ENSMUST00000075281.7 442 chr12:111647728+111653389,chr12:111647728+111655269 423,19 27 AAACATGTCATTCAGGTTTATCAAAAG 1 83.671903989 5.76625813976 0 chr12_+_111651957_111651984|83.671903989|5.76625813976 0 IN ENSMUST00000075281 Annotated NA Non-Neuronal NN1 23 -0.0342554954376696 -0.0691415567462765 -0.00369732903174749 TRUE TRUE TRUE FALSE FALSE FALSE chr12_+_112179479_112179500 ENSMUST00000183816.1 401 chr12:112179348+112179794 401 21 CCCTCCCAGGACGCAGAGAAG 1 86.0899822025 1.0251200071 3.73923114694e-13 chr12_+_112179479_112179500|86.0899822025|1.0251200071 6.87228052242972e-14 IN ENSMUST00000183816 Annotated NA Included I1 1 -0.000186232042780311 -9.3186385008988e-05 0.00175891274509481 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_112977130_112977149 ENSMUST00000223287.1 1 chr12:112976982+112977252 1 19 GCGTGTGCCCGCCCACAAG 1 75.9380933307 2.65991304815 3.51008111465e-12 chr12_+_112977130_112977149|75.9380933307|2.65991304815 2.81763501419618e-12 IN ENSMUST00000223287 Novel Alt5 Excluded E3 2 -0.00150308144053011 -0.0028207213658442 -0.00280273116894336 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_113134800_113134812 ENSMUST00000109727.8 1087 chr12:113133337+113135796,chr12:113133576+113135796 39,1048 12 GCACTTACCTGG 1 81.8280395081 2.14200001 5.13158607052e-07 chr12_+_113134800_113134812|81.8280395081|2.14200001 1.71448750641012e-07 IN ENSMUST00000109727 Missing in GENCODE NA Neuronal N1 18 0.0734561492171239 0.0341759855551261 0.0348774083254313 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr12_+_12276342_12276367 ENSMUST00000223061.1 41 chr12:12262238+12295615,chr12:12262238+12304180 6,35 25 TGGGAAGCAACACTGAGGAATGCAG 1 85.5411110758 -0.021689657724 0 chr12_+_12276342_12276367|85.5411110758|-0.021689657724 0 IN ENSMUST00000223061 Novel Alt3 Excluded E1 6 -0.000520159476670967 0.000695889864279524 0.000203601496085696 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_16955669_16955681 ENSMUST00000020904.7 0 chr12:16954967+16957225 0 12 GAAAGTCAGGAG 1 83.6173863121 2.19537496567 0.000133624657138 chr12_+_16955669_16955681|83.6173863121|2.19537496567 3.34038602149977e-05 IN ENSMUST00000020904 Annotated NA Included I1 1 6.30287699807548e-99 -1.59069713160179e-99 2.87363859579181e-99 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_16978673_16978692 ENSMUST00000020904.7 42 chr12:16978102+16984637 42 19 AAGAGCCATTTCTCTTTAG 1 85.6353344704 0.0766086937941 9.25410859054e-11 chr12_+_16978673_16978692|85.6353344704|0.0766086937941 1.7824408615752e-11 IN ENSMUST00000020904 Novel NA Excluded E1 6 0.000463877658359172 0.000237680163695801 0.000148529302454746 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_21214361_21214370 ENSMUST00000090834.12 338 chr12:21213225+21217974 338 9 TCTAGGAGA 1 75.6696481518 5.86869237973 7.05694098019e-05 chr12_+_21214361_21214370|75.6696481518|5.86869237973 5.79691721136477e-05 IN ENSMUST00000090834 Annotated NA Neuronal N1 18 0.0656438871509772 0.0217362256169741 0.0288371055582662 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr12_+_21214366_21214370 ENSMUST00000090834.12 39 chr12:21213225+21217974 39 4 GAGA 1 71.8253750818 6.09075009823 0.0697877293568 chr12_+_21214366_21214370|71.8253750818|6.09075009823 0.0678282653364926 IN ENSMUST00000090834 Missing in GENCODE NA Neuronal N6 15 0.0121969088184297 0.00561446626463918 0.00722790552381972 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr12_+_21294915_21294939 ENSMUST00000067284.9 5 chr12:21293354+21295029 5 24 TATGGGAACTGAACCTGGAGCCTT 1 80.5918796697 0.151678566255 0 chr12_+_21294915_21294939|80.5918796697|0.151678566255 0 IN ENSMUST00000067284 Novel NA Excluded E1 6 0.000233213322823389 0.000242547571885329 0.000902667428118201 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_24990214_24990217 ENSMUST00000066652.6 1 chr12:24989836+24990675 1 3 CAA 1 61.143777408 0.145000019244 0.0495149063181 chr12_+_24990214_24990217|61.143777408|0.145000019244 0.0495145011988352 IN ENSMUST00000066652 Novel NA Excluded E4 11 -0.00366517188345371 -0.000567288133867729 -0.00384656141465056 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_32968633_32968643 ENSMUST00000076698.12 3789 chr12:32967743+32969180,chr12:32967743+32974127 309,3480 10 ACTGTAAATG 1 76.1077230625 1.59949999835 5.30107405383e-06 chr12_+_32968633_32968643|76.1077230625|1.59949999835 4.18984353323104e-06 IN ENSMUST00000076698 Missing in GENCODE NA Neuronal N4 13 0.0302352945567992 0.0102969546181413 0.0303107375873422 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr12_+_3445451_3445454 ENSMUST00000092003.11 0 chr12:3442556+3450250,chr12:3442556+3451661 0 3 AAG 2 83.6333376526 3.99371436664 1 chr12_+_3445451_3445454|83.6333376526|3.99371436664 0.624694360346458 RESCUED ENSMUST00000092003 Annotated NA Included I1 1 3.2562605990333e-23 1.1345166605495e-22 -3.20175680937846e-23 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_3754095_3754116 ENSMUST00000164578.8 993 chr12:3751907+3772586 993 21 GAGGAAGAGCAAAAGCAGGCA 1 77.229841174 4.64339997049 1.83444370805e-11 chr12_+_3754095_3754116|77.229841174|4.64339997049 1.28375088337407e-11 IN ENSMUST00000164578 Annotated NA Neuronal N1 18 0.0541923035965904 0.00118916273937197 0.0194818447346002 TRUE TRUE TRUE 12.5 1 14.5 1 TRUE FALSE FALSE chr12_+_3774569_3774574 ENSMUST00000173542.7 2 chr12:3772746+3779618 2 5 GAGAG 1 83.3494935605 0.49222221329 0.0258405839947 chr12_+_3774569_3774574|83.3494935605|0.49222221329 0.00672736695135479 IN ENSMUST00000173542 Novel Alt5_3 Excluded E2 3 0.00511744141068007 0.00206467462151404 0.0017391454296562 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_38087572_38087593 ENSMUST00000220990.1 433 chr12:38084243+38100363 433 21 AAACAAGATATTCTTAACCAA 1 78.0556510507 3.70236000299 1.42952316651e-11 chr12_+_38087572_38087593|78.0556510507|3.70236000299 8.96205332168165e-12 IN ENSMUST00000220990 Annotated NA Muscular M1 22 0.020217898823919 -0.102270559783478 0.0257077234705746 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_40794596_40794623 ENSMUST00000037488.7 0 chr12:40790161+40794767,chr12:40794338+40794767 0 27 AATTCCACTATTTGGTCCCTACCCTAG 1 77.7904513825 4.98470959428 0 chr12_+_40794596_40794623|77.7904513825|4.98470959428 0 IN ENSMUST00000037488 Annotated NA Included I1 1 -6.02087419274466e-06 2.81249142278713e-05 1.27492848465034e-05 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr12_+_44535056_44535074 ENSMUST00000110748.3 2618 chr12:44532659+44537250 2618 18 CAAAGCTCCTTCATGACT 1 69.4592595685 3.32936358858 2.59717580775e-10 chr12_+_44535056_44535074|69.4592595685|3.32936358858 2.58028820532274e-10 IN ENSMUST00000110748 Annotated NA Neuro-Muscular NM1 12 0.0342759775469137 -0.0741714311648645 -0.0420851122231242 TRUE TRUE TRUE 11.5 1 TRUE FALSE TRUE chr12_+_44535061_44535074 ENSMUST00000110748.3 20 chr12:44532659+44537250 20 13 CTCCTTCATGACT 1 65.7723592478 3.08541172217 2.66241805602e-07 chr12_+_44535061_44535074|65.7723592478|3.08541172217 2.66122625047771e-07 IN ENSMUST00000110748 Novel NA Excluded E2 3 0.00321697701433547 -0.00938974736551978 -0.00554046927868468 TRUE FALSE FALSE TRUE FALSE TRUE chr12_+_44566839_44566869 ENSMUST00000110748.3 1699 chr12:44566412+44568543 1699 30 CTCCTACTCCAACTCCAGCCCCCATTTACG 1 75.5117920285 3.46202939354 0 chr12_+_44566839_44566869|75.5117920285|3.46202939354 0 IN ENSMUST00000110748 Annotated NA Neuro-Muscular NM1 12 0.0575599728060919 -0.0696616267391325 -0.0482948720654206 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE TRUE chr12_+_44578168_44578180 ENSMUST00000110748.3 48 chr12:44576789+44590107 48 12 GTGCAGGCAAAG 1 76.7701180154 3.74106252193 3.09710842616e-06 chr12_+_44578168_44578180|76.7701180154|3.74106252193 2.28730070994665e-06 IN ENSMUST00000110748 Novel Alt5 Excluded E1 6 0.000821884657605131 -0.00218214963737681 8.61931175996805e-05 TRUE FALSE FALSE TRUE FALSE FALSE chr12_+_44597781_44597793 ENSMUST00000110748.3 123 chr12:44591059+44598349 123 12 GTCTTTTGAAAG 1 82.4899165603 4.46999991313 1.69360866797e-06 chr12_+_44597781_44597793|82.4899165603|4.46999991313 5.05951459395249e-07 IN ENSMUST00000110748 Annotated NA Excluded E3 2 0.0125709961459965 -0.0296367823326664 0.0265210401841377 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_51594290_51594298 ENSMUST00000164782.9 9 chr12:51593791+51595334 9 8 TAGAAATG 1 84.0882961251 0.578083330144 9.1250550286e-05 chr12_+_51594290_51594298|84.0882961251|0.578083330144 2.13049927538789e-05 IN ENSMUST00000164782 Novel NA Excluded E1 6 0.000195636061044975 -0.000409914148513441 0.000254843936115316 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_51730887_51730899 ENSMUST00000021338.9 0 chr12:51723048+51738552 0 12 AGTGAATTAGAT 1 75.8766012582 4.05050002784 0.000922730567783 chr12_+_51730887_51730899|75.8766012582|4.05050002784 0.000744753022035805 IN ENSMUST00000021338 Annotated Alt3 Included I2 10 0.00266022884727525 -0.00258216362224139 0.00117499598078775 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_59137580_59137602 ENSMUST00000176752.7 1580 chr12:59136195+59137697 1580 22 ATTCGAAGCCGATTTTATGTGG 1 82.0971752213 2.04823074962 3.27737836869e-13 chr12_+_59137580_59137602|82.0971752213|2.04823074962 1.0458300891969e-13 IN ENSMUST00000176752 Annotated NA Included I1 1 -0.000290153519658114 -0.000206230861373788 -2.46107540065019e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_59146335_59146362 ENSMUST00000175912.7 203 chr12:59137786+59146846,chr12:59144770+59146846 124,79 27 TTTGTTGAAGGATCACAAATATCAGAG 1 81.5617695119 1.96522583043 0 chr12_+_59146335_59146362|81.5617695119|1.96522583043 0 IN ENSMUST00000175912 Annotated NA Excluded E4 11 -0.014810676214198 0.00183699950753963 0.0873637676908602 TRUE TRUE TRUE 10.5 -1 FALSE FALSE FALSE chr12_+_61597308_61597336 ENSMUST00000130887.1 30 chr12:61524830+61604965,chr12:61524830+61669479 27,3 28 ATTGGATCAGTTCTCAATAAAACCAGAG 1 71.3006726528 0.207031253609 0 chr12_+_61597308_61597336|71.3006726528|0.207031253609 0 IN ENSMUST00000130887 Novel NA Excluded E1 6 0.00054262491428573 -0.00100973438709082 -0.00105965303784833 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_61768007_61768027 ENSMUST00000055815.13 1 chr12:61669654+61839407 1 20 TTCTAAGAACAGAACCCAAG 1 79.4149331409 -0.109291668981 6.02998539989e-10 chr12_+_61768007_61768027|79.4149331409|-0.109291668981 3.05926506349863e-10 IN ENSMUST00000055815 Novel NA Excluded E1 6 -0.000206720489421975 0.00162393891209455 -0.000577956405430457 TRUE FALSE TRUE FALSE FALSE FALSE chr12_+_64970225_64970255 ENSMUST00000066296.8 176 chr12:64968028+64976694 176 30 ATTGGCCCTTTCAGTGGACAGAACCAAGAG 1 80.3835109681 0.237176474403 0 chr12_+_64970225_64970255|80.3835109681|0.237176474403 0 IN ENSMUST00000066296 Annotated NA Excluded E3 2 0.000596504130770599 0.00288101508838104 0.0255837386618329 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_69960547_69960562 ENSMUST00000222141.1 6 chr12:69959488+69963227 6 15 GGAAGCACAAATGAG 1 86.7293823658 5.38984224043 1.35332810514e-08 chr12_+_69960547_69960562|86.7293823658|5.38984224043 2.35343600163418e-09 IN ENSMUST00000222141 Annotated NA Included I1 1 3.01333960110569e-05 -0.000140510990557896 -6.59226378522413e-05 TRUE TRUE TRUE 13.5 1 14.5 1 TRUE FALSE FALSE chr12_+_71958746_71958773 ENSMUST00000221317.1 587 chr12:71952559+71959805 587 27 GAGTTCTTTGTGAACAACTCCAAGCAG 1 80.5342891156 3.4064838694 0 chr12_+_71958746_71958773|80.5342891156|3.4064838694 0 IN ENSMUST00000221317 Annotated NA Neuronal N1 18 0.0825306395118645 0.0455232726282193 -0.0306450870143012 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr12_+_76317154_76317177 ENSMUST00000021443.6 23 chr12:76315101+76317606 23 23 CTGCTGCAAGGCACAAAGTGGAG 1 82.0933772831 -0.0346296302698 0 chr12_+_76317154_76317177|82.0933772831|-0.0346296302698 0 IN ENSMUST00000021443 Novel NA Excluded E1 6 0.000192972047900028 8.87638922221106e-05 0.0013884612428406 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_76572046_76572069 ENSMUST00000219426.1 0 chr12:76571642+76572394 0 23 CAGCCAGAGCAGTGGGAATGAAG 1 78.0314132995 1.55318517238 1.03028696685e-11 chr12_+_76572046_76572069|78.0314132995|1.55318517238 6.48148201776166e-12 IN ENSMUST00000219426 Annotated NA FALSE TRUE TRUE FALSE FALSE FALSE chr12_+_76572049_76572069 ENSMUST00000075249.5 0 chr12:76571642+76572394 0 20 CCAGAGCAGTGGGAATGAAG 1 78.0232304689 1.68316665385 6.62112142891e-10 chr12_+_76572049_76572069|78.0232304689|1.68316665385 4.17018641840627e-10 IN ENSMUST00000075249 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr12_+_77239572_77239601 ENSMUST00000217879.1 1 chr12:77239253+77277360 1 29 CCGGGTCCCCACGGTCAGACCGTGGGAAG 1 80.0821618334 0.0802121243059 0 chr12_+_77239572_77239601|80.0821618334|0.0802121243059 0 IN ENSMUST00000217879 Novel NA Excluded E1 6 0.000911878655119081 0.00047913650153866 0.000703647111526333 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_78435173_78435195 ENSMUST00000052472.5 1 chr12:78412433+78454756 1 22 AAATTCCCAACATTCCCATTTT 1 75.9762108198 3.82134615458 9.39182065451e-12 chr12_+_78435173_78435195|75.9762108198|3.82134615458 7.51343431915075e-12 IN ENSMUST00000052472 Novel NA Excluded E1 6 0.000957863648172543 0.00054526881241049 0.00039281762196974 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_78435206_78435212 ENSMUST00000052472.5 1 chr12:78412433+78454756 1 6 AAAGGG 1 80.6008911413 4.31629998684 0.0395495065616 chr12_+_78435206_78435212|80.6008911413|4.31629998684 0.0163678145625957 IN ENSMUST00000052472 Novel NA Excluded E1 6 0.000247411055469242 3.10092383336662e-05 0.00054179696131568 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_78500131_78500154 ENSMUST00000052472.5 40 chr12:78492310+78504616 40 23 TTGACCAACTTTAGTTAATTTAG 1 82.1826288313 None 0 chr12_+_78500131_78500154|82.1826288313|None 0 IN ENSMUST00000052472 Novel NA Excluded E1 6 -6.77730977753968e-06 0.000213354456153686 -0.000161248993663631 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_78559116_78559122 ENSMUST00000110388.9 74 chr12:78504751+78562855,chr12:78532698+78562855 30,44 6 CATAAG 1 81.4520090972 2.79559994265 0.0283410721031 chr12_+_78559116_78559122|81.4520090972|2.79559994265 0.0101056132650903 IN ENSMUST00000110388 Novel NA Excluded E1 6 1.29805962109419e-05 2.71340366249278e-06 3.06127525473668e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_80948452_80948466 ENSMUST00000094693.10 2 chr12:80947865+80949094 2 14 TAAAGTGGTCCTTG 1 73.3522843545 3.88477784395 1.76223692305e-08 chr12_+_80948452_80948466|73.3522843545|3.88477784395 1.64962026261151e-08 IN ENSMUST00000094693 Novel NA FALSE FALSE TRUE FALSE FALSE FALSE chr12_+_88387225_88387253 ENSMUST00000101165.8 1 chr12:88371778+88401972 1 28 GATAATAATGGACTAAACCTCTAAAATG 1 83.0355076495 -0.0928125069477 0 chr12_+_88387225_88387253|83.0355076495|-0.0928125069477 0 IN ENSMUST00000101165 Novel NA Excluded E1 6 0.000693607749549249 0.000684048652908879 -0.00101173053358714 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_88832552_88832570 ENSMUST00000167734.7 0 chr12:88723186+89187021,chr12:88795893+88850278 0 18 ATGTCAGTCAAGGTCCAG 1 83.0983462638 3.16672726382 7.91085454699e-07 chr12_+_88832552_88832570|83.0983462638|3.16672726382 2.14167260037534e-07 IN ENSMUST00000167734 Annotated NA Included I1 1 -1.32944256141899e-06 6.24272195941529e-06 2.92593734445611e-06 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE FALSE FALSE chr12_+_88850278_88850308 ENSMUST00000167734.7 0 chr12:88723186+89187021,chr12:88832570+89187021 0 30 GCCTCTCCCATCTTATGATGAGTGAACAAG 1 86.9716562978 3.29405879098 0 chr12_+_88850278_88850308|86.9716562978|3.29405879098 0 IN ENSMUST00000167734 Annotated Alt3 Included I1 1 -0.000504166233180376 0.00228431759339865 -0.00127795442479487 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE FALSE FALSE chr12_+_89191152_89191176 ENSMUST00000167734.7 164 chr12:89187323+89193045 164 24 CACTCAGGCATCGGACACGCTATG 1 73.4701585463 5.76607143027 0 chr12_+_89191152_89191176|73.4701585463|5.76607143027 0 IN ENSMUST00000167734 Missing in GENCODE NA Excluded E1 6 0.000508372991504478 -0.000111082423828923 0.00674993518649597 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_8934259_8934286 ENSMUST00000020909.3 6 chr12:8931748+8934695 6 27 TCAGTTGTTTAACATGGAAAGGCATGT 1 78.2386771464 -0.282709672266 0 chr12_+_8934259_8934286|78.2386771464|-0.282709672266 0 IN ENSMUST00000020909 Novel NA Excluded E1 6 0.000187523460912959 1.45327592229808e-05 0.00022465942463513 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_89354452_89354479 ENSMUST00000167103.7 1264 chr12:89348449+89503017 1264 27 ACTGTATCAGGATAAACTGTAACTCCA 1 80.7688981176 5.69354836402 0 chr12_+_89354452_89354479|80.7688981176|5.69354836402 0 IN ENSMUST00000167103 Annotated NA Neuro-Muscular NM3 19 0.0226289509907995 -0.0939323052158962 -0.00787175646221432 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_89517905_89517932 ENSMUST00000167103.7 682 chr12:89513112+89532890 682 27 TTGCGTTGACCAAAGCTGACCTGCAAG 1 73.735289161 5.53390323347 0 chr12_+_89517905_89517932|73.735289161|5.53390323347 0 IN ENSMUST00000167103 Annotated NA Excluded E3 2 0.00107389233613305 -0.0150207047282956 0.024811455567466 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_98755697_98755725 ENSMUST00000110104.9 3 chr12:98752892+98756184 3 28 TGTATTCCTAGCTACTTGGGAGGCTGAG 1 79.822486439 0.0158124910668 0 chr12_+_98755697_98755725|79.822486439|0.0158124910668 0 IN ENSMUST00000110104 Novel NA Excluded E1 6 5.96626908792027e-05 2.11786791226382e-05 6.38122806885866e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_98937119_98937149 ENSMUST00000085109.9 85 chr12:98920783+98942217 85 30 GAACCAGCTCCTGATTTGCCAGTGTCTCAG 1 82.8291069704 1.65279409656 0 chr12_+_98937119_98937149|82.8291069704|1.65279409656 0 IN ENSMUST00000085109 Annotated NA Excluded E1 6 0.000523011130608732 0.000222870848149232 0.00106700533087647 TRUE FALSE FALSE FALSE FALSE FALSE chr12_+_99936049_99936058 ENSMUST00000153627.7 1 chr12:99935107+99945239 1 9 TCCTCACCT 1 62.6719296423 -0.189538469395 0.00015077348378 chr12_+_99936049_99936058|62.6719296423|-0.189538469395 0.000150768483028862 IN ENSMUST00000153627 Novel NA Excluded E1 6 0.000167609783502813 1.51935488489199e-05 0.000400765573219924 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_100337941_100337965 ENSMUST00000223020.1 15 chr12:100332719-100340496,chr12:100332719-100347935 11,4 24 GACATGCTGGGATGGAGGAAGCAG 1 79.6595548892 0.246250004142 0 chr12_-_100337941_100337965|79.6595548892|0.246250004142 0 IN ENSMUST00000223020 Novel NA Excluded E1 6 0.000168483893724949 -0.000165331383073973 0.00105366961598452 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_100340496_100340499 ENSMUST00000062957.7 101 chr12:100332719-100347935 101 3 TTA 2 82.0138277406 4.51028573513 0.604779729048 chr12_-_100340496_100340499|82.0138277406|4.51028573513,chr12_-_100336400_100336403|63.2797723916|0.304999987462 0.59786729713984 RESCUED ENSMUST00000062957 Novel Alt5 Excluded E1 6 9.79253693740947e-05 -8.17901515862186e-05 0.000887534471619606 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_100445955_100445979 ENSMUST00000062957.7 31 chr12:100419570-100446859 31 24 GATAGATGTGCATGAAGACCAACA 1 78.8178281987 2.28764288593 0 chr12_-_100445955_100445979|78.8178281987|2.28764288593 0 IN ENSMUST00000062957 Annotated Alt3 Excluded E1 6 0.000303472847599594 -0.000153198083353643 0.00292097634362522 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_102675442_102675467 ENSMUST00000046518.11 0 chr12:102623425-102695710,chr12:102674964-102704721,chr12:102623425-102704721 0 25 GAAGCGAGGGATAGAAGTCGTGCAG 1 92.3007160529 1.72865520572 1.84003923209e-11 chr12_-_102675442_102675467|92.3007160529|1.72865520572 3.13704617838084e-12 IN ENSMUST00000046518 Annotated Alt3 Included I1 1 -3.90327652431925e-05 -2.64098202482274e-05 0.00030863367396278 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_103424586_103424597 ENSMUST00000220975.1 1 chr12:103424471-103425586 1 11 CAACCATGAAG 1 81.5690891747 2.58833331217 1.02445430783e-06 chr12_-_103424586_103424597|81.5690891747|2.58833331217 3.57932901318136e-07 IN ENSMUST00000220975 Novel Alt3 Excluded E1 6 -5.52134564839101e-06 -0.000201548338185451 -8.15881732771728e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_103443481_103443511 ENSMUST00000055071.8 0 chr12:103442993-103443626 0 30 GAACACTGTTTGGCTCTGCCATAGGAGGAG 1 80.0511913735 0.120264705928 0 chr12_-_103443481_103443511|80.0511913735|0.120264705928 0 IN ENSMUST00000055071 Annotated NA Included I1 1 -1.84169186430834e-26 -6.63257179109072e-26 6.8839853624229e-26 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_103452470_103452500 ENSMUST00000044687.6 0 chr12:103451967-103455721 0 30 GAAAATTTGTGGGCGCTGCTATAGGAGGAG 1 80.1947879651 0.184764702702 0 chr12_-_103452470_103452500|80.1947879651|0.184764702702 0 IN ENSMUST00000044687 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr12_-_103457014_103457044 ENSMUST00000044687.6 0 chr12:103456519-103457152 0 30 GAAAATTTGTGGGCGCTGCTATAGGAGGAG 1 80.1947879651 0.245058824911 0 chr12_-_103457014_103457044|80.1947879651|0.245058824911 0 IN ENSMUST00000044687 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr12_-_109052833_109052862 ENSMUST00000190647.2 0 chr12:109039013-109068125,chr12:109039013-109053256 0 29 GCCTCTGCCGCAGACATGGAGAAACTCAG 1 88.9495534712 1.04327272782 0 chr12_-_109052833_109052862|88.9495534712|1.04327272782 0 IN ENSMUST00000190647 Annotated Alt5 Included I2 10 0.00199545449268927 -0.00935466606610803 -0.00477079773964321 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_110695765_110695780 ENSMUST00000094361.10 52 chr12:110695680-110696251 52 15 TCCAAAATAGAGTCG 1 77.9964377411 -0.82668422241 2.00816430151e-09 chr12_-_110695765_110695780|77.9964377411|-0.82668422241 1.26961707813678e-09 IN ENSMUST00000094361 Novel Alt3 Excluded E1 6 0.000507822697795663 -0.000155462410747836 0.000339026027375221 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_110977751_110977770 ENSMUST00000128353.7 5 chr12:110977548-110977947 5 19 TTGGAAGGACCTGGCTCAG 1 84.6626479647 -0.243347827507 5.34328137292e-12 chr12_-_110977751_110977770|84.6626479647|-0.243347827507 1.1545209233077e-12 IN ENSMUST00000128353 Novel Alt3 Excluded E2 3 -0.00122452996969077 -0.00142633533502106 -0.00155306468659283 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_11119002_11119032 ENSMUST00000055673.1 14 chr12:11092755-11119758 14 30 ACTTGAAGAAGAAACACTGCTGCTCTTTCA 1 75.1911424623 0.0529117693248 0 chr12_-_11119002_11119032|75.1911424623|0.0529117693248 0 IN ENSMUST00000055673 Novel NA Excluded E1 6 1.76028838012834e-05 -0.000967562421686687 0.00058817691005669 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_111962432_111962456 ENSMUST00000021719.6 0 chr12:111961538-111963229 0 24 ATAAAAGAAGTAAAGCTTTGAAAG 1 90.343673013 1.83339290188 5.90816284785e-12 chr12_-_111962432_111962456|90.343673013|1.83339290188 9.19930798204405e-13 IN ENSMUST00000021719 Annotated NA Included I1 1 1.24884392717392e-132 6.59599364706945e-133 2.05730125377447e-132 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_112912692_112912720 ENSMUST00000075827.4 0 chr12:112912614-112913164,chr12:112912614-112913144 0 28 ACACCAATGACTGCAACCCTCTGCCCTG 1 80.0653127984 2.93118748194 0 chr12_-_112912692_112912720|80.0653127984|2.93118748194 0 IN ENSMUST00000075827 Annotated NA Included I1 1 6.35869032663062e-14 -3.91015305209862e-13 -1.42773491863982e-13 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_13244967_13244997 ENSMUST00000071103.9 0 chr12:13243956-13245685 0 30 GCTGCAGAAACAGGAAGTGGAAAAACTGGT 1 82.0014671781 4.45885297831 0 chr12_-_13244967_13244997|82.0014671781|4.45885297831 0 IN ENSMUST00000071103 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_16558677_16558707 ENSMUST00000067124.5 2 chr12:16558501-16560981 2 30 TTACCTCCACGGGATTTTGGACGCCATTAG 1 73.4866623142 1.88999998175 0 chr12_-_16558677_16558707|73.4866623142|1.88999998175 0 IN ENSMUST00000067124 Missing in GENCODE NA Excluded E1 6 0.00433151645719931 0.00152938768285765 0.00487517789037786 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_17307470_17307500 ENSMUST00000095820.11 103 chr12:17301215-17308271 103 30 GTCTGAAGGAAAAGATGAAATGTTTAAAGA 1 78.3537892012 2.05311765401 0 chr12_-_17307470_17307500|78.3537892012|2.05311765401 0 IN ENSMUST00000095820 Annotated NA Neuro-Muscular NM3 19 0.020480939983517 -0.0557835943193327 0.0257680635184115 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_31600089_31600119 ENSMUST00000177962.8 49 chr12:31596377-31600643 49 30 CAAGAGTCAGTTCCAAACATTCATTCGTAG 1 78.4210817612 0.120088230819 0 chr12_-_31600089_31600119|78.4210817612|0.120088230819 0 IN ENSMUST00000177962 Novel NA Excluded E1 6 -2.18782580996145e-05 1.97161095397418e-06 7.5860102081686e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_41458966_41458995 ENSMUST00000043884.5 133 chr12:41454671-41485570 133 29 CTAGAAATCTGGGACCTGGGAAGAAAGAG 1 77.0028971018 -0.0549393925026 0 chr12_-_41458966_41458995|77.0028971018|-0.0549393925026 0 IN ENSMUST00000043884 Novel NA Excluded E1 6 0.000717456107328 -5.55242251520764e-05 -0.000541258154528117 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_50419852_50419876 ENSMUST00000002765.8 0 chr12:50395040-50425438 0 24 TCTCCTGTGAGCCCTGGCTTTGAG 1 83.0517352037 3.87378575546 1.07895914425e-10 chr12_-_50419852_50419876|83.0517352037|3.87378575546 2.94261282007824e-11 IN ENSMUST00000002765 Annotated NA Included I1 1 2.69912425624829e-08 -1.67450666965174e-08 -5.04136730984734e-08 TRUE FALSE TRUE FALSE FALSE FALSE chr12_-_51912204_51912231 ENSMUST00000040583.6 68 chr12:51910093-51914973 68 27 GAGATCTTGTTGGATAATTCTGTGTTG 1 83.9492915861 4.8000967195 0 chr12_-_51912204_51912231|83.9492915861|4.8000967195 0 IN ENSMUST00000040583 Annotated NA Neuronal N6 15 0.0156815964375841 0.00526706284929337 0.0297207862364738 TRUE TRUE FALSE FALSE FALSE FALSE chr12_-_54783402_54783419 ENSMUST00000218934.1 24 chr12:54770840-54784014 24 17 ACTATGCAGGTTACATT 1 71.9533310732 4.30804759264 2.9906459531e-09 chr12_-_54783402_54783419|71.9533310732|4.30804759264 2.90033164151993e-09 IN ENSMUST00000218934 Novel Alt5 Excluded E2 3 -0.000744882701126754 -0.000247174518668642 -0.00309065307401795 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_55605699_55605702 ENSMUST00000085385.6 1212 chr12:55604268-55612072,chr12:55604268-55612633 583,629 3 TTG 1 81.0239469327 2.99900002139 0.378677890649 chr12_-_55605699_55605702|81.0239469327|2.99900002139 0.145516710289563 RESCUED ENSMUST00000085385 Missing in GENCODE NA Neuro-Muscular NM4 16 0.0437191154420805 -0.0119625197015526 0.0455987897792381 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_56513571_56513599 ENSMUST00000218376.1 24 chr12:56511683-56528807 24 28 GGCTGTTTCAGCTTACGTCATCAGAAAG 1 82.5753701704 1.83206248283 0 chr12_-_56513571_56513599|82.5753701704|1.83206248283 0 IN ENSMUST00000218376 Annotated NA Excluded E3 2 -0.00542806567823551 0.000109020058301266 -0.00272937588090953 TRUE FALSE TRUE FALSE FALSE FALSE chr12_-_65070771_65070789 ENSMUST00000221166.1 1 chr12:65070052-65073814 1 18 CTTGGTCCCCAGACTAGG 1 76.8852300703 0.0700909148224 2.12594386539e-10 chr12_-_65070771_65070789|76.8852300703|0.0700909148224 1.54983581523993e-10 IN ENSMUST00000221166 Novel NA Excluded E1 6 -1.01033269559154e-05 3.30553191544569e-05 -3.49366225940101e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_66511989_66512010 ENSMUST00000178814.8 1221 chr12:66506822-66513181 1221 21 CACCTGTAAATCCTCATTTGA 1 82.0712456612 2.94675998092 5.62572211038e-12 chr12_-_66511989_66512010|82.0712456612|2.94675998092 1.80300219199125e-12 IN ENSMUST00000178814 Annotated NA Included I1 1 -0.000302514873819559 0.00152719281175906 -0.000213352133427805 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_70252019_70252043 ENSMUST00000223160.1 13 chr12:70251260-70268061 13 24 TTGACATTAAAAAGCTGTTGGCAG 1 72.097618199 3.52082146491 0 chr12_-_70252019_70252043|72.097618199|3.52082146491 0 IN ENSMUST00000223160 Annotated NA Excluded E4 11 0.00208400958158758 -0.0197833016470763 0.0317550761067922 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_70267233_70267263 ENSMUST00000110520.9 4 chr12:70252484-70268061,chr12:70266492-70267992 3,1 30 CGGGAGCCCATGAGACAAAACCTATGAAGG 1 78.5348818011 0.414941175019 0 chr12_-_70267233_70267263|78.5348818011|0.414941175019 0 IN ENSMUST00000110520 Annotated Alt5 Excluded E3 2 -5.06164693113984e-05 0.00343762103115041 -0.0256899511092032 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_71134958_71134973 ENSMUST00000221815.1 392 chr12:71126397-71136554,chr12:71132086-71136554,chr12:71132642-71136554,chr12:71133997-71136554 48,258,30,56 15 GTGCTGGGATTAAAG 1 81.4379567258 -0.191526318851 9.2331902124e-09 chr12_-_71134958_71134973|81.4379567258|-0.191526318851 3.30035576645571e-09 IN ENSMUST00000221815 Novel NA Excluded E1 6 0.00192484790700312 -0.00148704591411468 0.00875313024559821 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_76961262_76961289 ENSMUST00000082136.6 447 chr12:76953276-76961784,chr12:76953276-76961989 38,409 27 GAAGAGCAACCGAGGTTTCAATCTGCG 1 84.1468879539 3.52603225554 0 chr12_-_76961262_76961289|84.1468879539|3.52603225554 0 IN ENSMUST00000082136 Annotated NA Excluded E4 11 0.00195534044740339 -0.0200720965457773 -0.0107608326377676 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_81209453_81209471 ENSMUST00000085238.12 173 chr12:81205016-81214065 173 18 CGCTCCTGTTATCTCCAG 1 79.442174716 2.36154546724 5.13125542057e-10 chr12_-_81209453_81209471|79.442174716|2.36154546724 2.59151367032473e-10 IN ENSMUST00000085238 Annotated NA Muscular M1 22 0.0116556132129521 -0.125469514707501 -0.00430492790647253 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_81386168_81386172 ENSMUST00000164386.7 1 chr12:81359344-81474586 1 4 GTAT 1 70.2659761739 None 0.827670116888 chr12_-_81386168_81386172|70.2659761739|None 0.818595128092466 RESCUED ENSMUST00000164386 Novel NA Excluded E1 6 -0.000678327019838872 -0.000416954367446291 -0.000747255821450885 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_81574524_81574552 ENSMUST00000161211.7 0 chr12:81573960-81581800,chr12:81573960-81579569 0 28 CAAAAGTCTGGAGAAAAGCCTGTCCCAG 1 79.1309164152 3.82590623945 0 chr12_-_81574524_81574552|79.1309164152|3.82590623945 0 IN ENSMUST00000161211 Annotated NA Included I1 1 2.90051054649691e-116 3.63133330305375e-117 4.66526859300246e-116 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_83811285_83811305 ENSMUST00000110298.8 0 chr12:83808241-83831921 0 20 TTGTGGACGAGAAAACTAAG 1 75.4924225436 4.65845831111 2.15150064431e-08 chr12_-_83811285_83811305|75.4924225436|4.65845831111 1.79263768274041e-08 IN ENSMUST00000110298 Annotated Alt5 Excluded E2 3 0.00103230423991994 2.67298340656356e-05 0.00134128527107946 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_83827184_83827211 ENSMUST00000085215.10 4 chr12:83825291-83831921 4 27 ATTCATTTCATTGTATAAGTAATTCTA 1 69.9478815843 1.70170968483 0 chr12_-_83827184_83827211|69.9478815843|1.70170968483 0 IN ENSMUST00000085215 Novel NA Excluded E2 3 0.00077402081915173 -0.00421319113773207 -0.000657910730127458 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_84808424_84808444 ENSMUST00000002073.12 0 chr12:84807210-84809147 0 20 GTGACTCTCGGGCTGTTCAG 1 93.0817102585 1.31083332545 1.73986336449e-09 chr12_-_84808424_84808444|93.0817102585|1.31083332545 3.16459303206784e-10 IN ENSMUST00000002073 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr12_-_85169510_85169540 ENSMUST00000223220.1 0 chr12:85169417-85171374 0 30 ACCTATTCTGGAGACGACAAAGGCAGAAAG 1 86.4036228464 1.24535294639 0 chr12_-_85169510_85169540|86.4036228464|1.24535294639 0 IN ENSMUST00000223220 Annotated NA Included I1 1 4.77450666682644e-31 -1.93200593116687e-31 -2.0839347428138e-30 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_85240959_85240983 ENSMUST00000223230.1 0 chr12:85240876-85247611,chr12:85240876-85245762 0 24 GAATTAATTCGAGAACAAGTGGAG 1 88.0413973885 2.82117857977 1.72590830516e-11 chr12_-_85240959_85240983|88.0413973885|2.82117857977 2.7663427104585e-12 IN ENSMUST00000223230 Annotated NA Included I1 1 7.46979066092415e-16 -7.24157595381888e-15 -2.52708632371292e-15 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_87250476_87250504 ENSMUST00000072744.14 0 chr12:87249461-87251715 0 28 GTTCCTAGATAGAGCAGAAGAACTGGCG 1 88.8730768061 2.80687501072 0 chr12_-_87250476_87250504|88.8730768061|2.80687501072 0 IN ENSMUST00000072744 Annotated NA Included I1 1 7.99765739259333e-136 1.16212285591188e-136 9.64335178008134e-136 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_91063141_91063165 ENSMUST00000143415.7 0 chr12:91022477-91083673,chr12:91022477-91063275 0 24 GACCGTGTAAATGCATTACAAATG 1 87.9271830281 1.68260716461 1.44844136685e-10 chr12_-_91063141_91063165|87.9271830281|1.68260716461 2.33381092229479e-11 IN ENSMUST00000143415 Annotated NA Included I1 1 5.28941072934205e-11 -7.82095067409065e-14 -9.42338209852715e-11 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_91833204_91833222 ENSMUST00000167466.1 0 chr12:91831784-91841637,chr12:91831674-91841637 0 18 TCTTGACTGCCATTGAAG 1 86.4297940934 3.35290910879 1.43059868396e-07 chr12_-_91833204_91833222|86.4297940934|3.35290910879 2.55075498500901e-08 IN ENSMUST00000167466 Annotated Alt3 Excluded E3 2 -0.00290522872342839 -0.000284730745115396 -0.0104053643885301 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_98242522_98242532 ENSMUST00000021390.8 48 chr12:98234397-98242641 48 10 TATTTACTCG 1 76.4806115426 -0.0670714354409 3.06586692268e-05 chr12_-_98242522_98242532|76.4806115426|-0.0670714354409 2.33570328360688e-05 IN ENSMUST00000021390 Novel NA Excluded E1 6 0.00113539669973808 0.00027412535285264 0.00156167266323018 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_98805466_98805487 ENSMUST00000223282.1 0 chr12:98802457-98810518,chr12:98802474-98810514 0 21 GTGATTCTGCAGACATGTCAG 1 83.8815847056 3.88452006161 1.82240000868e-09 chr12_-_98805466_98805487|83.8815847056|3.88452006161 4.38220904008801e-10 IN ENSMUST00000223282 Annotated NA Included I1 1 2.05953582600135e-07 -9.45581220334184e-07 -4.93426050896728e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr12_-_98819860_98819869 ENSMUST00000065716.7 6 chr12:98817898-98824633 6 9 AGGATCTAG 1 72.3263921869 3.80830771648 0.000100160589884 chr12_-_98819860_98819869|72.3263921869|3.80830771648 9.64349677327059e-05 IN ENSMUST00000065716 Annotated NA FALSE FALSE TRUE FALSE FALSE FALSE chr12_-_98821599_98821614 ENSMUST00000065716.7 96 chr12:98817898-98824633 96 15 ACAGGGGGTAGTAAG 1 86.5035776751 3.47742110961 2.44326653354e-08 chr12_-_98821599_98821614|86.5035776751|3.47742110961 4.3286879636284e-09 IN ENSMUST00000065716 Annotated NA Included I3 5 0.00642291356980265 0.0106926802188608 0.0333156131488579 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_108173991_108174011 ENSMUST00000142931.7 0 chr13:108172783+108175553 0 20 TTGGAACAAGAGGACCCAAG 1 82.6764989072 4.30062503119 2.49747245107e-09 chr13_+_108173991_108174011|82.6764989072|4.30062503119 7.23535231728079e-10 IN ENSMUST00000142931 Annotated Alt3 Excluded E2 3 -7.3646795313242e-05 -0.000348479375847213 0.00625482935216548 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_108183724_108183739 ENSMUST00000142931.7 112 chr13:108178696+108183822 112 15 GTGAACTATGGGAAG 1 82.7848092 5.0856315374 1.85791575458e-08 chr13_+_108183724_108183739|82.7848092|5.0856315374 5.28845800484845e-09 IN ENSMUST00000142931 Novel Alt3 Excluded E2 3 0.00132532062076905 -0.00105400491442533 0.00341705258725265 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_108985254_108985266 ENSMUST00000122041.7 7 chr13:108860207+109032467 7 12 GATGAGTTGTTT 1 67.2225501684 -0.104187504447 4.01028772483e-05 chr13_+_108985254_108985266|67.2225501684|-0.104187504447 4.00485370778414e-05 IN ENSMUST00000122041 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_+_111687827_111687852 ENSMUST00000109272.8 0 chr13:111686354+111691235,chr13:111686454+111691235 0 25 GCTTCCTTTGGAAGTTCGAGCCCAG 1 81.2990212402 5.12989662433 4.22062385041e-12 chr13_+_111687827_111687852|81.2990212402|5.12989662433 1.54565249488314e-12 IN ENSMUST00000109272 Annotated NA Included I1 1 -1.43632258642402e-06 4.52500555177738e-05 -1.17573297672171e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_114820540_114820552 ENSMUST00000166104.8 3 chr13:114819457+114820801 3 12 AATACTCAAAAG 1 79.6392186564 -0.470937494887 3.09199047033e-07 chr13_+_114820540_114820552|79.6392186564|-0.470937494887 1.51077794385834e-07 IN ENSMUST00000166104 Novel NA Excluded E1 6 0.000101022707599066 -5.18164415418575e-05 6.84363065750451e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_119465926_119465949 ENSMUST00000225186.1 1 chr13:119464690+119466073 1 23 GAAGTTTATTTTAGATCCTAAAG 1 78.8596745726 0.0520740791431 0 chr13_+_119465926_119465949|78.8596745726|0.0520740791431 0 IN ENSMUST00000225186 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_+_12593507_12593519 ENSMUST00000221560.1 0 chr13:12591031+12595697 0 12 GGGAAGATGATG 1 89.5820137656 2.79475004418 0.000277123134674 chr13_+_12593507_12593519|89.5820137656|2.79475004418 4.2858792773548e-05 IN ENSMUST00000221560 Annotated NA Included I1 1 -9.75659961584234e-13 1.79643106655687e-11 6.85391984828414e-13 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_12595697_12595724 ENSMUST00000221560.1 0 chr13:12593519+12599860 0 27 GAGAATCATTCTATACGTGGCTAGAAG 1 85.5622068963 4.31209674333 0 chr13_+_12595697_12595724|85.5622068963|4.31209674333 0 IN ENSMUST00000221560 Annotated NA Included I1 1 -4.41245205234849e-20 3.22325694089614e-19 2.76341127954471e-20 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_19116236_19116260 ENSMUST00000003345.9 0 chr13:19113219+19118151 0 24 ACATTGCCCTGGGACTTATGGACG 1 85.9340941018 3.54575003205 1.74225078808e-11 chr13_+_19116236_19116260|85.9340941018|3.54575003205 3.25373061826895e-12 IN ENSMUST00000003345 Annotated NA Included I1 1 -2.30586644206333e-07 1.30939566091877e-06 5.60256304952376e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_19118151_19118175 ENSMUST00000003345.9 0 chr13:19116260+19120595 0 24 ACAAGCACTGATTTGGTACAACCA 1 80.1852240661 3.13917860485 1.53015378146e-11 chr13_+_19118151_19118175|80.1852240661|3.13917860485 6.80855372081623e-12 IN ENSMUST00000003345 Annotated NA Included I1 1 -3.37411480750234e-06 1.83622192448596e-05 7.61454515639485e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_21188040_21188063 ENSMUST00000222544.1 0 chr13:21183962+21189854 0 23 GACATTGGAGACACACTGAGCAG 1 83.6216330976 1.67866667319 8.33466629047e-11 chr13_+_21188040_21188063|83.6216330976|1.67866667319 2.08220107822399e-11 IN ENSMUST00000222544 Annotated NA Included I1 1 -6.65498403055865e-140 -2.08821479984654e-140 -1.36050573504412e-139 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_21190096_21190124 ENSMUST00000223065.1 0 chr13:21189970+21190592,chr13:21189970+21191219 0 28 ATGCAGTCAGATATGGAGAAGATCCAAG 1 79.4275353905 2.0346250541 0 chr13_+_21190096_21190124|79.4275353905|2.0346250541 0 IN ENSMUST00000223065 Annotated Alt5 Excluded E3 2 0.00613854417791817 0.000551232448244322 0.0130054513125761 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_21191219_21191246 ENSMUST00000222544.1 0 chr13:21190124+21192029,chr13:21190686+21192029 0 27 AGTTGAGAGAGGCTCAGTTATACTCAG 1 88.2216613473 1.52529032961 0 chr13_+_21191219_21191246|88.2216613473|1.52529032961 0 IN ENSMUST00000222544 Annotated NA Included I1 1 -4.5145448499916e-119 -8.43846547204859e-120 -8.85763074921871e-119 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_23789334_23789357 ENSMUST00000223911.1 61 chr13:23788441+23789457 61 23 GACGTGAAAAACACTTTGAGCAG 1 91.8973059601 1.46448147932 0 chr13_+_23789334_23789357|91.8973059601|1.46448147932 0 IN ENSMUST00000223911 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_+_23874592_23874614 ENSMUST00000129042.1 0 chr13:23872627+23875488 0 22 TTCCAGGGTTCTGTTCCTTCCG 1 79.6269962006 0.639999995725 1.6115109247e-10 chr13_+_23874592_23874614|79.6269962006|0.639999995725 7.89027732039926e-11 IN ENSMUST00000129042 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr13_+_24674646_24674670 ENSMUST00000110383.7 0 chr13:24673110+24675774 0 24 GGTGTGCTGTATGACCTAGACAAG 1 87.967717387 4.05646420177 9.36495325732e-12 chr13_+_24674646_24674670|87.967717387|4.05646420177 1.50601753290402e-12 IN ENSMUST00000110383 Annotated NA Included I1 1 6.2707623642751e-24 -5.38477535234006e-24 -1.38026314952329e-23 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_24962626_24962654 ENSMUST00000021773.12 0 chr13:24962427+24962737 0 28 GCACGGGGAGATGTTTGCTGTTTCCAAG 1 85.2410394294 2.49546871707 0 chr13_+_24962626_24962654|85.2410394294|2.49546871707 0 IN ENSMUST00000021773 Annotated Alt5_3 Other O2 21 -0.00826205041708084 -0.00747130217558843 0.00449381291846757 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_24986891_24986918 ENSMUST00000021773.12 0 chr13:24984868+24987008 0 27 GCACAGTATGTACTAACTTCTCCAGAG 1 91.0795408072 2.25987096395 0 chr13_+_24986891_24986918|91.0795408072|2.25987096395 0 IN ENSMUST00000021773 Annotated NA Included I1 1 -6.85934049545228e-08 -1.37376875058367e-06 3.57604892774725e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_29023630_29023637 ENSMUST00000140415.7 10 chr13:29023212+29028421 10 7 GGCTCCA 1 67.2687469079 -0.668818178502 0.00123853230689 chr13_+_29023630_29023637|67.2687469079|-0.668818178502 0.00123679581682601 IN ENSMUST00000140415 Novel Alt3 Excluded E2 3 -0.00151818600159648 0.00275868213773601 0.0107157223052118 TRUE TRUE TRUE 12.5 -1 FALSE FALSE FALSE chr13_+_38214604_38214612 ENSMUST00000091641.12 727 chr13:38211141+38216324 727 8 TAACTGGG 1 86.5854405071 3.27383326987 0.000308168133762 chr13_+_38214604_38214612|86.5854405071|3.27383326987 5.42220226050771e-05 IN ENSMUST00000091641 Novel Alt3 Excluded E3 2 0.00156967170906278 0.00226737805221828 0.00661729521550943 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_43400592_43400621 ENSMUST00000071926.4 0 chr13:43399569+43400852 0 29 CATAAAGAAATCACCAGAAAACGTAAAAG 1 84.6452465022 1.31533333715 0 chr13_+_43400592_43400621|84.6452465022|1.31533333715 0 IN ENSMUST00000071926 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_46422275_46422287 ENSMUST00000037923.4 4 chr13:46421905+46428953 4 12 GGCTCGTATACA 1 69.2190227125 4.73762503266 1.63726374602e-06 chr13_+_46422275_46422287|69.2190227125|4.73762503266 1.62819275284498e-06 IN ENSMUST00000037923 Novel Alt3 Excluded E1 6 -0.00228217920159096 -0.000833017915785216 -0.000798807934590299 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_47057676_47057697 ENSMUST00000037025.15 315 chr13:47053735+47058775 315 21 TGGGATATTTCAGAACTGCTG 1 74.0193404134 -0.0222400027514 4.4542147748e-12 chr13_+_47057676_47057697|74.0193404134|-0.0222400027514 4.06030764565912e-12 IN ENSMUST00000037025 Missing in GENCODE NA Neuronal N3 17 0.0506148922577962 0.0195092266296628 0.0265686755451514 TRUE TRUE TRUE 13.5 1 14.5 1 TRUE FALSE FALSE chr13_+_54104043_54104063 ENSMUST00000021930.9 108 chr13:54096780+54104801 108 20 GAGTCTCCTTGGGCACGAGG 1 72.8479526851 0.441999998836 2.84110512894e-11 chr13_+_54104043_54104063|72.8479526851|0.441999998836 2.70111710776177e-11 IN ENSMUST00000021930 Missing in GENCODE NA Excluded E3 2 -0.000766154017785113 -0.0377927051576677 -0.00338437850268377 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_55378006_55378028 ENSMUST00000063771.13 0 chr13:55369936+55378701,chr13:55369936+55378219 0 22 GTTCTGGCTGTCTCAGATGGAG 1 83.6317839506 2.63211543973 4.69356109534e-10 chr13_+_55378006_55378028|83.6317839506|2.63211543973 1.17079235195661e-10 IN ENSMUST00000063771 Annotated NA Included I1 1 1.38781730428207e-05 9.80895005346883e-05 -2.65233815369558e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_55660449_55660469 ENSMUST00000172272.7 1 chr13:55659098+55660716 1 20 GTTCTTCAGGCCCTATGATG 1 81.3661411667 4.28608333568 5.66302560401e-12 chr13_+_55660449_55660469|81.3661411667|4.28608333568 2.04969374806296e-12 IN ENSMUST00000172272 Novel NA Excluded E2 3 0.0033091585274733 -8.37140992783043e-05 -0.00447242760929233 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_56638020_56638045 ENSMUST00000225600.1 0 chr13:56637217+56638716 0 25 GCTGCCCAGAGGTCTGTGCGACTTG 1 85.2874433292 1.69696551211 1.30562227696e-12 chr13_+_56638020_56638045|85.2874433292|1.69696551211 2.61346499996762e-13 IN ENSMUST00000225600 Annotated NA Included I1 1 -4.8993972852853e-48 -2.96607022447159e-48 -2.56776786038144e-48 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_60718436_60718463 ENSMUST00000226059.1 0 chr13:60718350+60719609 0 27 GAGCATCGGGGTAATAACCTATATCCT 1 82.2100085133 4.86648388327 0 chr13_+_60718436_60718463|82.2100085133|4.86648388327 0 IN ENSMUST00000226059 Annotated NA Included I1 1 -1.03890194561475e-61 1.07897773375637e-60 5.18745662582572e-61 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_63286814_63286827 ENSMUST00000220670.1 150 chr13:63282258+63295012,chr13:63282258+63296857 16,134 13 AATTGTTAACAAG 1 88.3649817252 0.287529406083 7.41390702275e-07 chr13_+_63286814_63286827|88.3649817252|0.287529406083 1.17301360180733e-07 IN ENSMUST00000220670 Missing in GENCODE NA Excluded E2 3 -0.00229479006610824 -0.00281987332531327 -0.000440843117181421 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_66956381_66956394 ENSMUST00000224290.1 1 chr13:66953564+66956440 1 13 GTCTCAGTGTGTT 1 75.2829489872 4.15011769884 1.66415688674e-07 chr13_+_66956381_66956394|75.2829489872|4.15011769884 1.40864701347887e-07 IN ENSMUST00000224290 Novel Alt3 Excluded E1 6 -7.29502807550212e-05 0.00030020225123525 -0.000151074803898747 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_73810693_73810708 ENSMUST00000222253.1 268 chr13:73810084+73812202,chr13:73810084+73813538 6,262 15 AGAGTGGGGAAACCT 1 79.8023573664 2.65357898646 7.63611751609e-09 chr13_+_73810693_73810708|79.8023573664|2.65357898646 3.62916030560712e-09 IN ENSMUST00000222253 Missing in GENCODE NA Neuro-Muscular NM4 16 0.0332233510074068 -0.0437541829389126 0.024400627535884 TRUE TRUE FALSE 13.5 1 TRUE TRUE FALSE chr13_+_75847169_75847188 ENSMUST00000220523.1 0 chr13:75840175+75849243 0 19 GTTCCTCGGGTCTTCATAG 1 84.7399187441 2.22717394971 3.2905517755e-08 chr13_+_75847169_75847188|84.7399187441|2.22717394971 7.03981906102769e-09 IN ENSMUST00000220523 Annotated Alt3 Excluded E2 3 0.000295107768823046 5.43594381669344e-05 0.00167988792769116 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_76129359_76129384 ENSMUST00000225220.1 0 chr13:76128750+76130200 0 25 GCTGCGAGACTGGATGCACACATGG 1 77.9532102988 3.51703451188 1.26210153439e-12 chr13_+_76129359_76129384|77.9532102988|3.51703451188 8.02802269106451e-13 IN ENSMUST00000225220 Annotated Alt3 Excluded E2 3 0.000740928714464234 -0.00211268398701155 -0.00370318894994068 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_81796149_81796177 ENSMUST00000022009.9 167 chr13:81792147+81796653 167 28 GTTTACATGCTTTTGAGGTTTACATGAG 1 86.9347817703 -0.23912500334 0 chr13_+_81796149_81796177|86.9347817703|-0.23912500334 0 IN ENSMUST00000022009 Missing in GENCODE NA Excluded E1 6 0.000304433255563701 -0.00124263475784278 -0.000299378134723958 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_83654597_83654621 ENSMUST00000198199.4 14700 chr13:83652986+83655506 14700 24 TCTGAGGATGTGGATCTGCTGTTG 1 78.8699635325 4.67757139994 0 chr13_+_83654597_83654621|78.8699635325|4.67757139994 0 IN ENSMUST00000198199 Annotated NA Neuronal N1 18 0.0733931142506318 0.0287880644021557 0.0536042439413828 TRUE TRUE TRUE 13.5 1 12.5 1 FALSE FALSE FALSE chr13_+_83918203_83918206 ENSMUST00000185600.1 1 chr13:83910815+83927902 1 3 ACA 4 65.8245981617 None 0.647432182098 chr13_+_83918203_83918206|65.8245981617|None,chr13_+_83913384_83913387|64.868277317|0.138285720987,chr13_+_83912677_83912680|59.9730802139|-0.107428578394,chr13_+_83919842_83919845|63.384906227|None 0.911782550163723 RESCUED ENSMUST00000185600 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_+_85203297_85203325 ENSMUST00000022030.10 38 chr13:85202496+85206127 38 28 AAGCGACCTTAGCCTTTTAAAATTTATG 1 84.3167248459 0.243343746406 0 chr13_+_85203297_85203325|84.3167248459|0.243343746406 0 IN ENSMUST00000022030 Novel NA Excluded E1 6 5.99647676688261e-05 -6.20512985600059e-05 8.24486937148201e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_88977754_88977784 ENSMUST00000043111.6 501 chr13:88944948+89042431 501 30 CATCAGATGAAGAAAAGCCTACTTCAGCAG 1 79.9293120832 1.74814705025 0 chr13_+_88977754_88977784|79.9293120832|1.74814705025 0 IN ENSMUST00000043111 Annotated NA Included I2 10 0.0114907033457926 0.0117728865591001 0.00399537390466835 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_91693030_91693059 ENSMUST00000004094.14 0 chr13:91690938+91694018 0 29 GCTCAGGAGATATGGACAGTATTTCCAAG 1 84.2228121916 5.00933332245 0 chr13_+_91693030_91693059|84.2228121916|5.00933332245 0 IN ENSMUST00000004094 Annotated NA Included I1 1 -4.16020892177058e-124 3.17843267668984e-124 1.09345575350466e-123 TRUE FALSE FALSE FALSE FALSE FALSE chr13_+_94544013_94544022 ENSMUST00000220505.1 198 chr13:94542876+94547754,chr13:94542883+94547754 189,9 9 CCAATCAAG 1 83.6655856008 2.65061542163 7.23872215377e-05 chr13_+_94544013_94544022|83.6655856008|2.65061542163 1.79661797848896e-05 IN ENSMUST00000220505 Missing in GENCODE NA Excluded E2 3 0.0071544307062615 0.00238885686700709 0.00726782477468392 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_100630408_100630430 ENSMUST00000022136.13 68 chr13:100629582-100631055 68 22 CCTGGCCAACCCTACAGAATAG 1 76.6836631308 0.20626923098 3.21298543327e-13 chr13_-_100630408_100630430|76.6836631308|0.20626923098 2.39586128714109e-13 IN ENSMUST00000022136 Novel NA Excluded E1 6 0.00129522746094384 0.000559788862791473 0.000728148251312145 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_102806150_102806159 ENSMUST00000166726.7 550 chr13:102804720-102810500 550 9 AAATGACAG 1 76.796703583 3.65107694039 8.59313049391e-05 chr13_-_102806150_102806159|76.796703583|3.65107694039 6.32747899239616e-05 IN ENSMUST00000166726 Annotated NA Neuronal N4 13 0.0415320364800068 0.0127608456090642 0.0429509198921218 TRUE TRUE TRUE FALSE FALSE FALSE chr13_-_103764396_103764419 ENSMUST00000074616.6 1 chr13:103764006-103769316 1 23 TGACGCAGCCAACACGAACGGTT 1 63.5608198202 5.31300006972 0 chr13_-_103764396_103764419|63.5608198202|5.31300006972 0 IN ENSMUST00000074616 Novel Alt3 Excluded E1 6 0.00126357744562156 0.000646108015289952 0.000961534329633388 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_104152164_104152182 ENSMUST00000144060.7 539 chr13:104150183-104154295 539 18 AGTGACCTCAGTTCTGTG 1 79.0954229562 4.64590904117 2.32489583141e-10 chr13_-_104152164_104152182|79.0954229562|4.64590904117 1.24310339799649e-10 IN ENSMUST00000144060 Annotated NA Muscular M2 20 -0.0411325519030989 -0.0528473343738063 0.0458330883999119 TRUE TRUE TRUE 10.5 -1 10.5 -1 FALSE FALSE FALSE chr13_-_104634777_104634791 ENSMUST00000022228.12 1 chr13:104631738-104658028 1 14 ATTTGTGAGAGAAG 1 80.0252618135 1.12844443575 3.82307843827e-07 chr13_-_104634777_104634791|80.0252618135|1.12844443575 1.74882235248752e-07 IN ENSMUST00000022228 Novel NA Excluded E1 6 0.000307824538146765 0.000201481927698379 0.000186112644673391 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_106857498_106857525 ENSMUST00000186033.6 0 chr13:106857308-106860860 0 27 AGCTTCCATCCAGCTGCCTTGCAAACG 1 80.2853515284 0.371290321582 0 chr13_-_106857498_106857525|80.2853515284|0.371290321582 0 IN ENSMUST00000186033 Annotated NA Neuronal N4 13 0.0501726017136317 0.00705030047419191 0.0629837059927503 TRUE TRUE TRUE 13.5 1 14.5 1 TRUE FALSE FALSE chr13_-_11634306_11634330 ENSMUST00000021750.14 430 chr13:11623001-11635524 430 24 GTCACAGGATCCCAACGCAGCAAG 1 81.1077432606 3.66746430525 0 chr13_-_11634306_11634330|81.1077432606|3.66746430525 0 IN ENSMUST00000021750 Annotated NA Neuronal N2 8 0.0535560675037437 0.0587167709443484 0.0270785732608463 TRUE FALSE FALSE FALSE TRUE FALSE chr13_-_116860519_116860536 ENSMUST00000022239.7 43 chr13:116855292-116862209 43 17 TAGATGGAACTCATTAG 1 84.8860012589 0.925714286488 1.56796886586e-09 chr13_-_116860519_116860536|84.8860012589|0.925714286488 3.29346327987423e-10 IN ENSMUST00000022239 Novel NA Excluded E1 6 0.00133990667252925 0.000971568809208889 -0.00243430683469986 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_11890833_11890848 ENSMUST00000021750.14 0 chr13:11885538-11903217,chr13:11885538-11918310,chr13:11885538-11895191 0 15 AAGTTCATGATGAAG 1 85.8737759375 3.87515785192 8.97232143648e-06 chr13_-_11890833_11890848|85.8737759375|3.87515785192 1.6858235545314e-06 IN ENSMUST00000021750 Annotated NA Included I1 1 -9.57074197748293e-06 1.17955034507041e-06 1.9528417982928e-05 TRUE TRUE TRUE 13.5 1 FALSE TRUE TRUE chr13_-_11903217_11903238 ENSMUST00000021750.14 0 chr13:11885538-11918310,chr13:11890848-11918310,chr13:11900912-11918310 0 21 CAGGTGGATGTGGAAAAGTGG 1 85.413431298 2.38508007288 3.95016286348e-09 chr13_-_11903217_11903238|85.413431298|2.38508007288 7.79564524044929e-10 IN ENSMUST00000021750 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_-_12451400_12451427 ENSMUST00000124888.7 0 chr13:12448507-12452721 0 27 ATACAAAAGCCAGGCAAGCTCCAGCTG 1 87.6800408299 0.50141935423 0 chr13_-_12451400_12451427|87.6800408299|0.50141935423 0 IN ENSMUST00000124888 Annotated NA Included I1 1 7.81216948711287e-77 2.62191633946421e-75 5.43276818348046e-76 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_12456343_12456353 ENSMUST00000143693.7 1 chr13:12454945-12459173 1 10 ATTCAGAAAG 1 81.0728712824 2.00142854133 1.56982501281e-05 chr13_-_12456343_12456353|81.0728712824|2.00142854133 5.98095293380396e-06 IN ENSMUST00000143693 Novel Alt5 Excluded E1 6 -1.7575623170381e-05 -0.000295874718940305 0.00041657461886234 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_19305768_19305798 ENSMUST00000103561.2 0 chr13:19305202-19307221 0 30 TTGCTACAACTTGCTGGCAAGATAAAAATG 1 79.2951945067 0.0539117637364 0 chr13_-_19305768_19305798|79.2951945067|0.0539117637364 0 IN ENSMUST00000103561 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_-_21428267_21428289 ENSMUST00000122872.7 2 chr13:21423624-21433390 2 22 GAAATGATACTGAACTGAACAG 1 83.5498520651 -0.0247307699532 2.16271445197e-12 chr13_-_21428267_21428289|83.5498520651|-0.0247307699532 5.46118705813115e-13 IN ENSMUST00000122872 Novel Alt5 Excluded E2 3 -0.00150550251143101 -0.00115992268199281 -0.00225075069498975 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_23459872_23459893 ENSMUST00000041674.13 0 chr13:23459779-23460464 0 21 AGAGACTTCTGGAAGAACTCA 1 84.0368167988 1.60532001317 1.50066625793e-10 chr13_-_23459872_23459893|84.0368167988|1.60532001317 3.52927687075066e-11 IN ENSMUST00000041674 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_-_23480449_23480476 ENSMUST00000041541.10 0 chr13:23478841-23481771,chr13:23478841-23480566 0 27 GATGGAGACGAACCCTCTTACATGCTG 1 84.7826628125 1.06806451599 0 chr13_-_23480449_23480476|84.7826628125|1.06806451599 0 IN ENSMUST00000041541 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_-_23480566_23480587 ENSMUST00000041541.10 0 chr13:23478841-23481771,chr13:23480476-23481771 0 21 GGCAACTTCAAGAGGAACTGC 1 82.6201513147 1.48875998527 2.88764567813e-10 chr13_-_23480566_23480587|82.6201513147|1.48875998527 8.44327940896505e-11 IN ENSMUST00000041541 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_-_24020046_24020071 ENSMUST00000072889.11 322 chr13:24013460-24022495,chr13:24019710-24022495 269,53 25 CGTGCCCAACTAATTTCTGAAACAG 1 76.8042649327 2.23786208342 0 chr13_-_24020046_24020071|76.8042649327|2.23786208342 0 IN ENSMUST00000072889 Annotated NA Neuronal N4 13 0.0398041454382571 0.0129582517419754 0.0253654564753155 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr13_-_24049642_24049660 ENSMUST00000072889.11 317 chr13:24045082-24064576 317 18 ACTCTCTGCTGTACAAGT 1 75.9013914368 4.85695450414 1.10685505206e-09 chr13_-_24049642_24049660|75.9013914368|4.85695450414 8.9141616310684e-10 IN ENSMUST00000072889 Annotated NA Neuronal N3 17 0.059964753565033 0.0238852556020385 -0.00646068689848706 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr13_-_24102071_24102083 ENSMUST00000110398.7 100 chr13:24099663-24106308 100 12 CTTGGCCACTGT 1 75.2982097935 4.26849995367 1.54343314585e-06 chr13_-_24102071_24102083|75.2982097935|4.26849995367 1.30500418371593e-06 IN ENSMUST00000110398 Annotated NA Neuronal N3 17 0.0605135323825189 0.0290105317125541 -0.00540945645547983 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr13_-_24107397_24107415 ENSMUST00000072889.11 37 chr13:24106378-24108489 37 18 CTTTGAGTTCATCATGAG 1 77.0630081059 -0.429681819948 1.18745902e-10 chr13_-_24107397_24107415|77.0630081059|-0.429681819948 8.47926173719316e-11 IN ENSMUST00000072889 Novel NA Excluded E1 6 0.00304325203138923 0.000560407588943853 0.00464618837357278 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_29691345_29691368 ENSMUST00000137225.7 52 chr13:29625954-29691598 52 23 TACACGTGGACTTCATTTCCCAG 1 77.2337081657 0.854740741352 0 chr13_-_29691345_29691368|77.2337081657|0.854740741352 0 IN ENSMUST00000137225 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_-_34193248_34193264 ENSMUST00000148390.2 3 chr13:34192279-34193393 3 16 CTGAAGTTGGCCGTAG 1 72.5264744779 2.08920000196 9.9498720374e-10 chr13_-_34193248_34193264|72.5264744779|2.08920000196 9.53702894435082e-10 IN ENSMUST00000148390 Novel NA Excluded E2 3 0.00176246169400405 -0.00877586223876316 0.0167692772416579 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_34193248_34193272 ENSMUST00000148390.2 200 chr13:34192279-34193393 200 24 AATTGCAGCTGAAGTTGGCCGTAG 1 76.6751695598 2.0047857144 0 chr13_-_34193248_34193272|76.6751695598|2.0047857144 0 IN ENSMUST00000148390 Annotated NA Excluded E3 2 0.0137001488030125 -0.0386522401683304 0.061498428566713 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_34193252_34193272 ENSMUST00000148390.2 79 chr13:34192279-34193393 79 20 AATTGCAGCTGAAGTTGGCC 1 74.2488049356 1.9647083357 3.87245790989e-12 chr13_-_34193252_34193272|74.2488049356|1.9647083357 3.49142936784119e-12 IN ENSMUST00000148390 Novel NA Excluded E3 2 0.00566911149084038 -0.0220056285245145 0.0344809047252155 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_34914440_34914454 ENSMUST00000021851.7 0 chr13:34913684-34914571 0 14 GCAAAACTAACAAG 1 86.9337114423 1.63416667614 3.23727203544e-06 chr13_-_34914440_34914454|86.9337114423|1.63416667614 5.54187037482556e-07 IN ENSMUST00000021851 Annotated Alt5 Other O2 21 -0.0146413822881798 -0.0106795473269879 -0.00419246576800098 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_3599836_3599856 ENSMUST00000096069.4 0 chr13:3599751-3599938 0 20 ACTTGAGCTCAATAAAAATG 1 86.784107203 1.51095831565 1.48247636389e-10 chr13_-_3599836_3599856|86.784107203|1.51095831565 2.56692445077533e-11 IN ENSMUST00000096069 Annotated NA Included I1 1 -1.2249696952732e-60 1.79771655517068e-60 3.29281079318724e-60 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_37983094_37983104 ENSMUST00000021864.7 76 chr13:37979806-37983392 76 10 AGTAGAAGAG 1 81.8525879997 4.24021428823 1.33066484367e-05 chr13_-_37983094_37983104|81.8525879997|4.24021428823 4.42710446391104e-06 IN ENSMUST00000021864 Novel NA Excluded E1 6 0.004106161998922 0.00134865719085755 0.00380314640130388 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_37983094_37983109 ENSMUST00000021864.7 105 chr13:37979806-37983392 105 15 TGCAGAGTAGAAGAG 1 82.5354572923 4.63021053139 1.29766702939e-08 chr13_-_37983094_37983109|82.5354572923|4.63021053139 3.84757592453155e-09 IN ENSMUST00000021864 Annotated NA Neuronal N3 17 0.0567851445561196 0.0177253603634575 0.0431056380983519 TRUE TRUE TRUE 11.5 1 14.5 1 TRUE FALSE FALSE chr13_-_38658487_38658498 ENSMUST00000001757.8 1 chr13:38656240-38658906 1 11 TGGAATGCTTG 1 68.18677763 0.182266667237 2.46893309863e-06 chr13_-_38658487_38658498|68.18677763|0.182266667237 2.46221485966647e-06 IN ENSMUST00000001757 Novel NA Excluded E1 6 4.36682811104605e-05 4.35931316467272e-05 -5.33338005450183e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_43153183_43153199 ENSMUST00000220579.1 208 chr13:43151980-43154688 208 16 GGTCTGGGATAAAGTC 1 82.1974407904 4.24429999385 2.44472175837e-09 chr13_-_43153183_43153199|82.1974407904|4.24429999385 7.66960939202477e-10 IN ENSMUST00000220579 Annotated Alt3 Excluded E2 3 0.00185917525043375 0.000960636083038391 -0.0041568081042982 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_43430447_43430470 ENSMUST00000222239.1 1002 chr13:43425214-43434813 1002 23 GTATTGCTTTCACCGACTTACCG 1 90.8515609336 4.26070367021 0 chr13_-_43430447_43430470|90.8515609336|4.26070367021 0 IN ENSMUST00000222239 Annotated NA Included I1 1 -0.000259952338900726 -8.63891740942864e-05 -0.000313901032424724 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_44953171_44953194 ENSMUST00000222583.1 0 chr13:44931151-44970045,chr13:44931163-44970045,chr13:44948274-44970045,chr13:44952383-44970045,chr13:44931257-44970045 0 23 GAAGGAGCTTGAAGCCTTCAAAG 1 88.4815439019 2.83855558987 2.50608422903e-10 chr13_-_44953171_44953194|88.4815439019|2.83855558987 3.94940746772932e-11 IN ENSMUST00000222583 Annotated NA Included I1 1 -7.63811445796736e-134 2.62011252978907e-135 -6.84991895775662e-134 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_46864818_46864831 ENSMUST00000056978.7 0 chr13:46848386-46929215,chr13:46848386-46882664 0 13 AAAACCTCCCAAG 1 86.0478941417 2.01894112194 0.000510398359456 chr13_-_46864818_46864831|86.0478941417|2.01894112194 9.42606548158809e-05 IN ENSMUST00000056978 Annotated NA Included I1 1 -7.71347988294467e-33 2.00935209089867e-33 8.01302488041771e-33 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_49215753_49215768 MmuEX0000084 0 chr13:49210203-49215936,chr13:49208146-49215936 0 15 GAGGAAGAGCAGCAG 1 75.3947810045 -0.636421045583 5.32156303423e-06 chr13_-_49215753_49215768|75.3947810045|-0.636421045583 4.46729444480987e-06 IN MmuEX0000084 Missing in GENCODE NA Excluded E2 3 0.000692337010668935 -0.005120130812629 0.00258117980221066 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_51695418_51695447 ENSMUST00000110042.1 160 chr13:51691498-51700836 160 29 GAATTGGATAGTTAAAGAACCAACAGAGA 1 75.159619575 0.589575758035 0 chr13_-_51695418_51695447|75.159619575|0.589575758035 0 IN ENSMUST00000110042 Missing in GENCODE NA Neuronal N1 18 0.0584265805394114 0.0430542456063246 -0.0857264292813854 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_54595142_54595169 ENSMUST00000091609.10 4 chr13:54594042-54598721 4 27 ACTGGTGGCTGCTTTGAACCTGTGCAG 1 83.8254788 0.105129033087 0 chr13_-_54595142_54595169|83.8254788|0.105129033087 0 IN ENSMUST00000091609 Novel NA Excluded E1 6 0.00078548326896974 0.000326814596163227 0.00118686307000106 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_54765914_54765938 ENSMUST00000036825.13 10 chr13:54765692-54766304 10 24 GTTGCAGATCTCCGGATAACTGAG 1 72.7337728515 0.81589285626 0 chr13_-_54765914_54765938|72.7337728515|0.81589285626 0 IN ENSMUST00000036825 Missing in GENCODE NA Excluded E1 6 -3.23367017039703e-05 -0.00013194378735662 0.000515536068643278 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_55328613_55328643 ENSMUST00000021941.7 0 chr13:55328484-55329268,chr13:55328484-55328837 0 30 GTCTGTGCACAACGAGCTGGAGAAGCGCAG 1 85.7837648016 3.61385288046 0 chr13_-_55328613_55328643|85.7837648016|3.61385288046 0 IN ENSMUST00000021941 Annotated NA Included I1 1 1.76310327784001e-67 4.88984170865201e-68 3.84126212786553e-67 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_55507863_55507880 ENSMUST00000155098.7 5224 chr13:55507624-55508207,chr13:55507624-55508779 2410,2814 17 GTGCAGACCTCTGACAA 1 85.4768913931 1.70852380849 1.27784005599e-10 chr13_-_55507863_55507880|85.4768913931|1.70852380849 2.50405252089081e-11 IN ENSMUST00000155098 Annotated NA Neuro-Muscular NM2 9 0.0472956469837338 -0.0655036176806956 0.0687627625772068 TRUE TRUE TRUE 13.5 1 TRUE TRUE FALSE chr13_-_55508297_55508326 ENSMUST00000128910.7 1 chr13:55507624-55508779 1 29 GCCCTGACCCCTCCCGCCGACCCCCCGAG 1 77.0377000266 1.91406061252 0 chr13_-_55508297_55508326|77.0377000266|1.91406061252 0 IN ENSMUST00000128910 Novel Alt3 Excluded E2 3 0.00374681727239375 -0.000126897682191288 0.00715822685913515 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_57702303_57702312 ENSMUST00000187852.6 1340 chr13:57696155-57907401 1340 9 GAAGTTGAG 1 83.2991190889 3.30169224739 0.00314266845292 chr13_-_57702303_57702312|83.2991190889|3.30169224739 0.000824544803925575 IN ENSMUST00000187852 Annotated NA Neuro-Muscular NM3 19 0.0341358520057089 -0.0918172827414661 -0.0541106074668479 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr13_-_64147481_64147495 ENSMUST00000134136.1 17 chr13:64145680-64150069,chr13:64145680-64152388 6,11 14 TGCTAGGATCAAAG 1 77.1677621474 0.0372777746783 6.36064194648e-08 chr13_-_64147481_64147495|77.1677621474|0.0372777746783 4.48512411654889e-08 IN ENSMUST00000134136 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_-_67496184_67496211 ENSMUST00000076123.11 53 chr13:67494729-67500370,chr13:67494729-67500410 27,26 27 CTGTTCTGGCTCAAATTCCTCTCCCAG 1 81.3334098445 0.157096771103 0 chr13_-_67496184_67496211|81.3334098445|0.157096771103 0 IN ENSMUST00000076123 Annotated NA Excluded E1 6 0.00452803743665747 0.00214089345019879 -0.000350707376100553 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_74339198_74339211 ENSMUST00000160667.7 0 chr13:74337539-74339571 0 13 CTAGAAAATTATG 1 81.6657294391 4.34617643935 3.00253874687e-05 chr13_-_74339198_74339211|81.6657294391|4.34617643935 1.03163655537086e-05 IN ENSMUST00000160667 Annotated Alt3 Excluded E2 3 -0.000803518027467883 -0.000275431499886366 -0.00238833953046626 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_85230387_85230410 ENSMUST00000223598.1 0 chr13:85229682-85289106 0 23 GAGAAACTCCAGAACAAGCAGAG 1 90.0742610861 3.60366665677 8.44082137519e-10 chr13_-_85230387_85230410|90.0742610861|3.60366665677 1.30871091741369e-10 IN ENSMUST00000223598 Annotated Alt5 Excluded E1 6 0.000128555299376 -0.000489949281907504 0.00074676144373768 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_93081183_93081206 ENSMUST00000062122.3 0 chr13:93074471-93083150 0 23 TCCTTTGAGGAAATCAATGAAAG 1 71.6408643375 2.65285184979 1.22952314996e-10 chr13_-_93081183_93081206|71.6408643375|2.65285184979 1.19848020396773e-10 IN ENSMUST00000062122 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr13_-_98751906_98751931 ENSMUST00000099277.11 0 chr13:98749894-98752333 0 25 GTGCAGATGAATCGGAATTCATCTA 1 83.8069379562 2.67513789493 2.14050999148e-12 chr13_-_98751906_98751931|83.8069379562|2.67513789493 5.20361531641811e-13 IN ENSMUST00000099277 Annotated Alt3 Included I1 1 -4.14216719644804e-66 -1.02546618763952e-66 -1.85653828895252e-66 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_98752333_98752345 ENSMUST00000099277.11 0 chr13:98752034-98755079,chr13:98751931-98755079 0 12 AGACACAGTCCA 1 72.8581035382 2.66949995793 0.000180526134557 chr13_-_98752333_98752345|72.8581035382|2.66949995793 0.000171583336609604 IN ENSMUST00000099277 Annotated NA Included I1 1 -6.69382285505933e-17 -1.37669669786061e-15 1.01126395444519e-16 TRUE FALSE FALSE FALSE FALSE FALSE chr13_-_98762831_98762856 ENSMUST00000099277.11 0 chr13:98755625-98763689,chr13:98755852-98763689 0 25 GGAATGTCCTGATGCAGATTCGCTT 1 79.3292723706 1.92224138025 6.93489710102e-12 chr13_-_98762831_98762856|79.3292723706|1.92224138025 3.5687008903551e-12 IN ENSMUST00000099277 Annotated NA Included I1 1 -2.40257393366157e-96 -7.04743939303638e-97 -4.35770505063417e-96 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_101654207_101654219 ENSMUST00000002289.7 0 chr14:101654119+101665760,chr14:101654105+101665760 0 12 GTCACCAACCAG 1 88.6838704291 2.87175000459 0.000692663848526 chr14_+_101654207_101654219|88.6838704291|2.87175000459 0.000108507576472516 IN ENSMUST00000002289 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_101888676_101888706 ENSMUST00000159948.7 277 chr14:101884414+101896466 277 30 ACTCTTTCAAAAGATCTATGGTGAGAATGG 1 84.2072406449 3.33391174356 0 chr14_+_101888676_101888706|84.2072406449|3.33391174356 0 IN ENSMUST00000159948 Annotated NA Neuro-Muscular NM5 7 0.0226018124783633 -0.0296287484228776 -0.019091198358965 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_101917630_101917656 ENSMUST00000100337.9 0 chr14:101915744+101917939 0 26 GAAGCTCGGATTCTGTGGCCCCCGAT 1 83.7661273836 2.76116668259 4.80726569663e-13 chr14_+_101917630_101917656|83.7661273836|2.76116668259 1.17572618307804e-13 IN ENSMUST00000100337 Annotated NA Included I1 1 6.78563166830752e-18 1.45136824627557e-18 -8.90643034236516e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_103563826_103563852 ENSMUST00000227322.1 27 chr14:103562530+103564782 27 26 GGTCAGAAGTTTGAGGCACTGGTCAG 1 74.4740226722 -0.159566661219 0 chr14_+_103563826_103563852|74.4740226722|-0.159566661219 0 IN ENSMUST00000227322 Novel NA FALSE FALSE TRUE FALSE FALSE FALSE chr14_+_117892341_117892371 ENSMUST00000088483.9 106 chr14:117888665+117951137 106 30 AGGACTGTGTGGAGGACCATGCAGCACAGT 1 80.11316682 4.63126469009 0 chr14_+_117892341_117892371|80.11316682|4.63126469009 0 IN ENSMUST00000088483 Annotated NA Neuronal N4 13 0.0351425950048543 0.0122210085004903 0.0358969845101915 TRUE TRUE FALSE 14.5 1 FALSE FALSE FALSE chr14_+_122728070_122728085 ENSMUST00000147018.1 208 chr14:122714125+122737901,chr14:122717619+122737901 188,20 15 ATGACAGAATATCAT 1 78.234292254 -0.08668421052 7.37163619036e-08 chr14_+_122728070_122728085|78.234292254|-0.08668421052 4.50355991388207e-08 IN ENSMUST00000147018 Missing in GENCODE NA Excluded E2 3 0.00468074188194667 0.00172982965253972 0.00420123629259076 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_14350937_14350967 ENSMUST00000090591.3 0 chr14:14350806+14351049,chr14:14349372+14355006 0 30 AGCTCCCGCTCAGAGCCACAGGAATACAAT 1 78.8499035134 0 0 chr14_+_14350937_14350967|78.8499035134|0 0 IN ENSMUST00000090591 Annotated NA Included I1 1 0.000305657104586715 -0.000365923834695633 0.000637873332511991 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_14770986_14770994 ENSMUST00000057015.7 1 chr14:14766985+14771208 1 8 AAAAGAAG 1 74.8261260723 0.0446666764716 0.000250963669978 chr14_+_14770986_14770994|74.8261260723|0.0446666764716 0.000219076682834274 IN ENSMUST00000057015 Novel NA Excluded E1 6 1.30484476930692e-52 -4.0006459346593e-51 -1.80066128546426e-52 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_20306231_20306249 ENSMUST00000224066.1 0 chr14:20304092+20307692 0 18 AGTTGGAAGGGCTGCTGG 1 82.2310352803 1.7807727407 5.20667513548e-08 chr14_+_20306231_20306249|82.2310352803|1.7807727407 1.62421751603858e-08 IN ENSMUST00000224066 Annotated Alt3 Excluded E2 3 -0.000989847561280122 0.00109076984570088 -0.00392793936423234 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_20690703_20690725 ENSMUST00000224791.1 0 chr14:20690020+20690835 0 22 ACTCTGTTTCAGCCTCAGACAG 1 83.7105393787 3.70761539529 4.48494574812e-11 chr14_+_20690703_20690725|83.7105393787|3.70761539529 1.10575992806616e-11 IN ENSMUST00000224791 Annotated Alt3 Excluded E2 3 0.000515768639510599 -0.000154181333597083 0.00169782757164388 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_20988277_20988280 ENSMUST00000226113.1 32 chr14:20987118+20995011 32 3 AAG 2 81.486225068 4.24385707719 0.382043944467 chr14_+_20988277_20988280|81.486225068|4.24385707719,chr14_+_20987971_20987974|75.9050857949|0.0667142889329 0.567708638565505 RESCUED ENSMUST00000226113 Missing in GENCODE NA Excluded E2 3 0.000921263669133128 -0.00615702239073136 0.0102754889903228 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_24493616_24493619 ENSMUST00000225023.1 91 chr14:24493493+24495774 91 3 AAG 1 80.9716734921 5.1727144037 0.129596325389 chr14_+_24493616_24493619|80.9716734921|5.1727144037 0.0502592046686605 IN ENSMUST00000225023 Novel NA Excluded E2 3 -0.00348356900540148 0.00459061225122226 0.002626989992651 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_24494051_24494069 ENSMUST00000225023.1 76 chr14:24493493+24495774 76 18 AAATGAAATACCTAGCAG 1 79.1511490679 3.6338182322 1.28409283207e-10 chr14_+_24494051_24494069|79.1511490679|3.6338182322 6.80404621533626e-11 IN ENSMUST00000225023 Annotated NA Muscular M1 22 0.0129493131359657 -0.0906501111946045 0.0174033783420532 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_26696365_26696392 ENSMUST00000022433.11 0 chr14:26696031+26697237 0 27 ATGACCAGTGAAATAAAGAAAAGAGGA 1 80.304513853 2.06974196098 0 chr14_+_26696365_26696392|80.304513853|2.06974196098 0 IN ENSMUST00000022433 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr14_+_27776158_27776182 ENSMUST00000090302.5 762 chr14:27653483+27776825 762 24 TTACTGGACGCCAGAAGAACCAAG 1 77.0438112545 4.30271427493 0 chr14_+_27776158_27776182|77.0438112545|4.30271427493 0 IN ENSMUST00000090302 Annotated NA Neuronal N2 8 0.0581503528437734 -0.0463114838815136 -0.0971686656449352 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr14_+_28046474_28046486 ENSMUST00000090302.5 1334 chr14:28040536+28080131 1334 12 CTTGACTCTCAG 1 81.9727064277 3.53399993479 9.21516158636e-06 chr14_+_28046474_28046486|81.9727064277|3.53399993479 3.00344878978454e-06 IN ENSMUST00000090302 Annotated Alt5 Neuro-Muscular NM1 12 0.0510355868692338 -0.0972779271464851 -0.0587763446345344 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr14_+_30895810_30895840 ENSMUST00000120269.10 0 chr14:30895558+30896102 0 30 GTGATGGCATGCAGAGACTCCCCTTAGCAG 1 90.1123095217 -0.431029423359 0 chr14_+_30895810_30895840|90.1123095217|-0.431029423359 0 IN ENSMUST00000120269 Annotated NA Included I1 1 0.000230885715957183 0.000592548219155152 0.000185557380111177 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_31008849_31008867 ENSMUST00000226271.1 1 chr14:31008712+31009734 1 18 CACAGCAGACCATCTCCG 1 77.1461138995 3.11572724888 5.68434188608e-11 chr14_+_31008849_31008867|77.1461138995|3.11572724888 4.0187742023079e-11 IN ENSMUST00000226271 Novel Alt5 Excluded E2 3 -0.000365696241550659 -0.000709439381697533 -0.000679304167288104 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_31019803_31019828 ENSMUST00000112098.10 6 chr14:31019293+31022719 6 25 AGAGACTTACTTATTTACAGGCTAG 1 81.5888729801 0.357206905325 0 chr14_+_31019803_31019828|81.5888729801|0.357206905325 0 IN ENSMUST00000112098 Novel NA Excluded E1 6 -0.000129323928341264 0.000379080292922489 -0.00040224118743807 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_31251749_31251779 ENSMUST00000022458.10 0 chr14:31251654+31251899 0 30 GCCTCTTCACCCTCCTGGTGGAAGATTTCG 1 78.9294185291 4.58999997673 0 chr14_+_31251749_31251779|78.9294185291|4.58999997673 0 IN ENSMUST00000022458 Annotated Alt5_3 Other O1 4 -0.000511621257865403 -0.000169549676512399 0.00549574681071647 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_34094397_34094413 ENSMUST00000120077.1 0 chr14:34093943+34094722 0 16 GCCCTGCATGAAGCGG 1 78.4290919582 1.98170003109 1.7671844299e-07 chr14_+_34094397_34094413|78.4290919582|1.98170003109 1.04882327822686e-07 IN ENSMUST00000120077 Annotated Alt3 Excluded E1 6 3.88510172135437e-05 -5.1751858061015e-05 0.000745456097917524 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_3903835_3903840 ENSMUST00000178256.1 12 chr14:3826808+3966334 12 5 TGTGA 4 67.5886714132 None 0.412698013206 chr14_+_3867560_3867565|61.3561512081|None,chr14_+_3867550_3867555|66.0149784469|None,chr14_+_3867566_3867571|64.8312646827|None,chr14_+_3903835_3903840|67.5886714132|None 0.852991648243695 RESCUED ENSMUST00000178256 Novel NA Excluded E3 2 0.00205698128672395 -0.00582398572214081 -0.0355570494857401 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_46884998_46885016 ENSMUST00000228404.1 0 chr14:46884790+47016276 0 18 GAGAGGCCAACAGCCCGG 1 76.7481245004 4.220590903 1.91305115371e-06 chr14_+_46884998_46885016|76.7481245004|4.220590903 1.41629101002572e-06 IN ENSMUST00000228404 Annotated Alt5 Excluded E2 3 0.00165730521586421 0.00111249937101968 0.00518275331184696 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_47308566_47308588 ENSMUST00000166743.8 0 chr14:47298932+47310414,chr14:47298405+47310414 0 22 GAAAATGTCAGATGAATTTTCG 1 90.920234562 2.39823071559 6.51198206469e-10 chr14_+_47308566_47308588|90.920234562|2.39823071559 1.03012820495962e-10 IN ENSMUST00000166743 Annotated Alt5 Included I1 1 0.000313693154097681 0.000942160073896705 0.00295133787820178 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_47379522_47379544 ENSMUST00000151405.8 0 chr14:47368368+47380052,chr14:47373979+47380052,chr14:47373952+47380052,chr14:47374122+47380052 0 22 GAAAATGGCAGACAGCTTTTCG 1 87.8332703739 2.34288462714 3.35603544954e-10 chr14_+_47379522_47379544|87.8332703739|2.34288462714 5.43231015726064e-11 IN ENSMUST00000151405 Annotated Alt5 Included I2 10 -0.000550080004542186 0.00123937333117523 -0.00385096375303179 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_47734154_47734181 ENSMUST00000189986.6 1 chr14:47733322+47736099 1 27 GAGTCTCCTGAGAAAGAGACGATGTCT 1 81.5856965227 2.00503224867 0 chr14_+_47734154_47734181|81.5856965227|2.00503224867 0 IN ENSMUST00000189986 Novel Alt3 Excluded E2 3 -0.00100649184794344 -0.00164743599731115 -0.00317509247782926 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_50818842_50818870 ENSMUST00000036126.6 70 chr14:50817470+50819209 70 28 TCTTCACAGGTCTCTCTCTTTCAAATAG 1 74.7865239346 0.408406241797 0 chr14_+_50818842_50818870|74.7865239346|0.408406241797 0 IN ENSMUST00000036126 Novel NA Excluded E1 6 0.000203572285599986 6.42331915466667e-05 0.000401549198129793 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_52004878_52004899 ENSMUST00000182905.7 0 chr14:52004742+52004988 0 21 GCCTGGCTGAGAGGCATCAAG 1 81.7932020566 0.366960004121 5.0249582273e-11 chr14_+_52004878_52004899|81.7932020566|0.366960004121 1.68894898067151e-11 IN ENSMUST00000182905 Annotated Alt3 Excluded E2 3 0.000603298513145519 0.00169770034985305 -0.000738524049125066 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_55494406_55494421 ENSMUST00000228877.1 0 chr14:55494249+55494652 0 15 CCACTTGGAGAGCCG 1 83.4110892131 3.71010526701 3.57627804926e-07 chr14_+_55494406_55494421|83.4110892131|3.71010526701 9.22303761141663e-08 IN ENSMUST00000228877 Annotated Alt5 Excluded E2 3 0.000218404886969711 0.00433205187218309 0.00134981421165705 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_55579803_55579833 ENSMUST00000174563.7 0 chr14:55579627+55579930 0 30 AAAATCTCAGAGTTGGATGCGTTCTTAAAG 1 74.7715738687 1.66617647591 0 chr14_+_55579803_55579833|74.7715738687|1.66617647591 0 IN ENSMUST00000174563 Annotated Alt5 Excluded E2 3 0.0017044403829362 0.000111005182205943 0.0057571218207657 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_55580782_55580811 ENSMUST00000089619.12 0 chr14:55580663+55580917 0 29 CTGGAAGGCTTCCACACGCAGATCTCCAA 1 74.7801019664 2.87645455393 0 chr14_+_55580782_55580811|74.7801019664|2.87645455393 0 IN ENSMUST00000089619 Annotated Alt5 Excluded E1 6 -2.12127165180411e-05 4.38827343243712e-05 2.14021394344407e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_55672467_55672492 ENSMUST00000226735.1 1 chr14:55672384+55672705 1 25 GGGCGAAAAAAGGGAGAGTAACTAG 1 86.2233588876 0.0535862069449 0 chr14_+_55672467_55672492|86.2233588876|0.0535862069449 0 IN ENSMUST00000226735 Novel Alt5 Excluded E1 6 0.000318964770547649 0.000447568862025175 0.000563139713959942 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_61198602_61198629 ENSMUST00000119943.7 85 chr14:61193479+61202697 85 27 CACAGCAGCTTCTCTGGGGATACTCAG 1 78.6692252341 3.92548391656 0 chr14_+_61198602_61198629|78.6692252341|3.92548391656 0 IN ENSMUST00000119943 Novel NA Neuro-Muscular NM3 19 0.0375664710854163 -0.00266760009020774 0.0031675433051621 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_61198607_61198629 ENSMUST00000119943.7 31 chr14:61193479+61202697 31 22 CAGCTTCTCTGGGGATACTCAG 1 77.9462013764 3.88003850843 2.04103400847e-12 chr14_+_61198607_61198629|77.9462013764|3.88003850843 1.29951605032375e-12 IN ENSMUST00000119943 Novel NA Neuro-Muscular NM4 16 0.0335132029267322 0.00051947766255331 0.0222934864587471 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr14_+_64708491_64708504 ENSMUST00000100473.4 0 chr14:64669717+64714073 0 13 GGGCCAGCCAAAG 1 82.1262467121 2.00258825369 0.000660484335846 chr14_+_64708491_64708504|82.1262467121|2.00258825369 0.000209717815783717 IN ENSMUST00000100473 Annotated NA Included I1 1 9.30536755115723e-20 4.4620468159075e-18 1.64996838291127e-20 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_64765710_64765740 ENSMUST00000100473.4 0 chr14:64765149+64767353 0 30 GAGGAAGAGGAGGACATGGACAGCTACCAG 1 88.6402286663 3.86808823969 0 chr14_+_64765710_64765740|88.6402286663|3.86808823969 0 IN ENSMUST00000100473 Annotated NA Included I1 1 -2.92630964176609e-09 -4.66347222308116e-07 -1.82131158867308e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_66307025_66307048 ENSMUST00000022623.12 0 chr14:66304235+66307811 0 23 AAACACAAGAGCCGAAAACGCCG 1 92.6788871199 2.575407395 5.04343233843e-11 chr14_+_66307025_66307048|92.6788871199|2.575407395 8.85480577750286e-12 IN ENSMUST00000022623 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_66346869_66346889 ENSMUST00000152093.7 1 chr14:66344411+66353148 1 20 ATTCAACTTTATTCTAAGTA 1 70.3871304032 -0.00554166926304 3.09547942834e-11 chr14_+_66346869_66346889|70.3871304032|-0.00554166926304 3.05884206852625e-11 IN ENSMUST00000152093 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr14_+_66360952_66360982 ENSMUST00000118426.7 2 chr14:66358731+66361074 2 30 GATACCTTCGCTGACAGCTCTGCTCTGCCC 1 69.1473107335 0.147294121685 0 chr14_+_66360952_66360982|69.1473107335|0.147294121685 0 IN ENSMUST00000118426 Novel NA Excluded E2 3 -0.00172457858766319 0.00203229380748984 0.000657809112745882 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_76504829_76504841 ENSMUST00000177207.1 1 chr14:76504293+76505248 1 12 ACTTGACAATAG 1 72.7840437429 3.90812502801 2.18627950521e-07 chr14_+_76504829_76504841|72.7840437429|3.90812502801 2.08213454699901e-07 IN ENSMUST00000177207 Novel Alt5 Excluded E2 3 0.000120874702910578 0.00015734872600897 -0.000145720471740451 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_79603469_79603486 ENSMUST00000054908.9 0 chr14:79602900+79607245 0 17 GATCAGAATCTGAAGTG 1 89.7833044914 1.83438095007 2.51689894148e-07 chr14_+_79603469_79603486|89.7833044914|1.83438095007 3.8933593571322e-08 IN ENSMUST00000054908 Annotated NA Included I1 1 -1.41614796646547e-139 -4.44361869054332e-140 -2.89508948661685e-139 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_8162338_8162357 ENSMUST00000112689.8 161 chr14:8155345+8163934,chr14:8160031+8163934 7,154 19 CTGCCTTAGGTAAAGGAAG 1 91.5467217354 1.70408696519 5.5138116295e-11 chr14_+_8162338_8162357|91.5467217354|1.70408696519 8.96627216917523e-12 IN ENSMUST00000112689 Missing in GENCODE NA Neuronal N6 15 0.0205298287900021 0.00987926949593125 -0.00345727055487441 TRUE TRUE FALSE 14.5 1 FALSE FALSE FALSE chr14_+_8216079_8216108 ENSMUST00000022272.13 1 chr14:8214342+8220150 1 29 AGAAACTCAGTACAAAGGCAGCTTGGAAG 1 80.6540622765 1.1195757669 0 chr14_+_8216079_8216108|80.6540622765|1.1195757669 0 IN ENSMUST00000022272 Novel Alt5 Excluded E1 6 0.000535820817386995 0.00114025632975163 0.00196536820082759 TRUE FALSE FALSE FALSE FALSE FALSE chr14_+_84517999_84518028 ENSMUST00000071370.6 2 chr14:84477687+84532874 2 29 ACTTCAGTCTGTTGATCCGCTTCCTCCAG 1 76.7715681373 2.69054544785 0 chr14_+_84517999_84518028|76.7715681373|2.69054544785 0 IN ENSMUST00000071370 Novel NA Excluded E1 6 0.00456796761608234 0.000714931228087328 0.00358154618418217 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_101460698_101460701 ENSMUST00000161991.7 51 chr14:101458893-101462874 51 3 AAG 2 85.1964654453 3.18942860195 0.215384204418 chr14_-_101461424_101461427|68.6285468988|-0.00471428888185,chr14_-_101460698_101460701|85.1964654453|3.18942860195 0.521788481005997 RESCUED ENSMUST00000161991 Annotated NA Neuronal N6 15 0.0178958461550588 0.00624461362742604 0.0229404292866061 TRUE TRUE TRUE FALSE FALSE FALSE chr14_-_101471427_101471451 ENSMUST00000161991.7 35 chr14:101465764-101476979 35 24 ACAGGACACTGCTTCAGAGTCAAG 1 80.1909900269 2.33360713933 0 chr14_-_101471427_101471451|80.1909900269|2.33360713933 0 IN ENSMUST00000161991 Annotated NA Excluded E2 3 0.00426699426213549 -0.00148178642665223 0.0174663849799246 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_101640287_101640299 ENSMUST00000168587.2 5615 chr14:101637106-101640388 5615 12 GTCACGGGCCAG 1 89.7896228796 1.77856250107 7.60424593182e-07 chr14_-_101640287_101640299|89.7896228796|1.77856250107 1.17632056984007e-07 IN ENSMUST00000168587 Annotated Alt3 Included I2 10 -0.00771565522833123 -0.000890343611063737 0.00283172804532177 TRUE TRUE FALSE 15.5 -1 FALSE FALSE FALSE chr14_-_118122738_118122765 ENSMUST00000227350.1 43 chr14:118121861-118127494,chr14:118121861-118128222 42,1 27 GTTGTTGATATGGCCTGTTTATCTCCT 1 79.4581260565 0.150580650256 0 chr14_-_118122738_118122765|79.4581260565|0.150580650256 0 IN ENSMUST00000227350 Novel NA Excluded E1 6 8.76273948344227e-05 -0.000520046414353927 0.00155781119658086 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_121491673_121491690 ENSMUST00000088386.7 0 chr14:121491310-121505218 0 17 GGATGTCCAAGTCTCGG 1 88.8050246585 0.310999998734 8.08329460478e-07 chr14_-_121491673_121491690|88.8050246585|0.310999998734 1.26242559517209e-07 IN ENSMUST00000088386 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr14_-_121544575_121544583 ENSMUST00000040700.8 1613 chr14:121543625-121545965 1613 8 ATGGGATG 1 71.8809976134 3.57258330286 0.000138749990502 chr14_-_121544575_121544583|71.8809976134|3.57258330286 0.000134728576753229 IN ENSMUST00000040700 Annotated NA Neuronal N1 18 0.071214489777182 0.0279055024420036 0.00978649424022915 TRUE TRUE TRUE 13.5 1 12.5 1 FALSE FALSE FALSE chr14_-_12468345_12468366 ENSMUST00000224882.1 1004 chr14:12467179-12473408 1004 21 CCACATGTTGATAAAGGAGAA 1 75.7074894271 2.445920012 5.51025891582e-12 chr14_-_12468345_12468366|75.7074894271|2.445920012 4.51216841668156e-12 IN ENSMUST00000224882 Annotated NA Excluded E3 2 0.010742430194184 -0.0470552530702418 0.0290889713293306 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_12472397_12472406 ENSMUST00000224882.1 1154 chr14:12467179-12473408 1154 9 GGGAAAGAG 1 78.6318673326 5.16515385188 9.26213290509e-05 chr14_-_12472397_12472406|78.6318673326|5.16515385188 5.32968081417007e-05 IN ENSMUST00000224882 Missing in GENCODE NA Excluded E3 2 0.0086408924060087 -0.0422848547525093 0.00257792970977293 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_12485640_12485658 ENSMUST00000224581.1 2790 chr14:12473515-12486524,chr14:12473515-12488980 480,2310 18 AGAATCAAAAGGATGCAG 1 77.1371024279 4.97350010547 7.38225480745e-10 chr14_-_12485640_12485658|77.1371024279|4.97350010547 5.22486387488641e-10 IN ENSMUST00000224581 Annotated NA Muscular M2 20 0.0207807527039258 -0.0658460887189928 0.0962599178461174 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_12517803_12517815 ENSMUST00000224882.1 1617 chr14:12509232-12522202 1617 12 CTGGACTGAAGG 1 81.1999986327 5.79537499696 3.01608360986e-06 chr14_-_12517803_12517815|81.1999986327|5.79537499696 1.12381537031858e-06 IN ENSMUST00000224882 Annotated NA Excluded E4 11 -0.00315879324435896 -0.00169111642113472 0.0399693344909 TRUE TRUE FALSE FALSE FALSE FALSE chr14_-_13264009_13264026 ENSMUST00000060526.10 0 chr14:13170679-13284511,chr14:13263742-13264879 0 17 GAACCTCTGAACTAAAG 1 70.8888035158 -0.0880952392306 6.495974747e-08 chr14_-_13264009_13264026|70.8888035158|-0.0880952392306 6.39110104838636e-08 IN ENSMUST00000060526 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr14_-_16435238_16435258 ENSMUST00000225921.1 2 chr14:16435120-16436733 2 20 ATTCTCAGAATTTGTACCAG 1 86.8495007938 4.70037504503 5.64526203561e-12 chr14_-_16435238_16435258|86.8495007938|4.70037504503 9.72555369571637e-13 IN ENSMUST00000225921 Novel Alt3 Excluded E1 6 0.00125256193859495 8.75446947907112e-05 0.00370418882424417 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_18818568_18818586 ENSMUST00000150727.7 127 chr14:18586998-18871493,chr14:18630431-18871493,chr14:18630431-18888265,chr14:18636280-18871493 2,108,15,2 18 CCTTCATGTGCTGGGACT 1 81.0207704753 0.148863633248 1.33690604143e-08 chr14_-_18818568_18818586|81.0207704753|0.148863633248 5.1402663236999e-09 IN ENSMUST00000150727 Annotated NA Excluded E1 6 0.00383146653430607 0.00234053729559926 -0.00252713731267986 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_20503246_20503276 ENSMUST00000159027.7 0 chr14:20501662-20508623 0 30 CCACAGTTGAGGCTATTGAGGCTGAAAAAG 1 80.6823741796 5.26750000785 0 chr14_-_20503246_20503276|80.6823741796|5.26750000785 0 IN ENSMUST00000159027 Annotated NA Neuro-Muscular NM5 7 0.0304231486907155 -0.00465623221353758 -0.007292507422067 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr14_-_20511473_20511500 ENSMUST00000161445.7 183 chr14:20509497-20515522,chr14:20509500-20515522 77,106 27 AACGGCTCATATATGGCAATAAAAAAG 1 74.8395914896 4.1745483683 0 chr14_-_20511473_20511500|74.8395914896|4.1745483683 0 IN ENSMUST00000161445 Missing in GENCODE NA Excluded E2 3 0.00101581401603107 -0.00314413847072188 0.00535355116507723 TRUE FALSE FALSE TRUE FALSE FALSE chr14_-_20792851_20792872 ENSMUST00000100837.10 1 chr14:20792613-20793900 1 21 GCAATCAGTGAGATGCAGCAG 1 72.7327715768 1.19147999093 1.12088116566e-12 chr14_-_20792851_20792872|72.7327715768|1.19147999093 1.0689227281091e-12 IN ENSMUST00000100837 Novel NA Excluded E1 6 0.000291379299297804 -4.9985054104051e-05 0.000429771445480503 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_23306724_23306753 ENSMUST00000145596.2 456 chr14:23300042-23309039,chr14:23300045-23309039 115,341 29 TGCAACAAGGATGACTAGAATGGGCCAAG 1 81.3470478954 5.82172721805 0 chr14_-_23306724_23306753|81.3470478954|5.82172721805 0 IN ENSMUST00000145596 Annotated NA Excluded E3 2 0.00372902687319302 -0.0471213019541377 0.030781977498909 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_23432232_23432241 ENSMUST00000145596.2 588 chr14:23386353-23435949,chr14:23391007-23435949,chr14:23425740-23435949 394,34,160 9 TGATCTATT 1 70.2388036522 5.53369236451 0.000151920699546 chr14_-_23432232_23432241|70.2388036522|5.53369236451 0.000150283389706907 IN ENSMUST00000145596 Annotated NA Excluded E3 2 0.00397628347523696 0.0130516779970457 -0.020037411176868 TRUE TRUE FALSE FALSE FALSE FALSE chr14_-_23449199_23449208 ENSMUST00000179836.7 6 chr14:23442079-23451598 6 9 CCGAAAGCG 1 73.3496948512 5.50053847753 0.000141640407414 chr14_-_23449199_23449208|73.3496948512|5.50053847753 0.000132600602420152 IN ENSMUST00000179836 Novel NA Neuronal N6 15 0.0109571177164341 -0.00117779590430586 0.00845802358701087 TRUE TRUE TRUE 12.5 1 FALSE FALSE FALSE chr14_-_23449199_23449211 ENSMUST00000179836.7 2690 chr14:23442079-23451598 2690 12 AAGCCGAAAGCG 1 80.7835374432 5.54837502539 2.21258715916e-06 chr14_-_23449199_23449211|80.7835374432|5.54837502539 8.86852394854643e-07 IN ENSMUST00000179836 Annotated NA Neuronal N2 8 0.0682407722331632 -0.018862386053627 -0.0862626578635562 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr14_-_23604423_23604447 ENSMUST00000172099.8 65 chr14:23591681-23650124 65 24 GAGCCGCACAGCAGACTCTTTGAT 1 76.503157485 3.50814292899 0 chr14_-_23604423_23604447|76.503157485|3.50814292899 0 IN ENSMUST00000172099 Novel NA Excluded E1 6 0.00157016850083156 -0.0023291108875425 0.00146416167539365 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_27505637_27505663 ENSMUST00000050480.7 48 chr14:27498889-27506650 48 26 AGCATAAATCAAAAGTTTCTGTGAAG 1 87.8470465316 1.92690000081 0 chr14_-_27505637_27505663|87.8470465316|1.92690000081 0 IN ENSMUST00000050480 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr14_-_29124665_29124683 ENSMUST00000022567.8 0 chr14:29105025-29170503 0 18 CTCCCTCAGGCTCAAAAG 1 81.5197505045 3.46595452049 9.52509709551e-07 chr14_-_29124665_29124683|81.5197505045|3.46595452049 3.35659566252922e-07 IN ENSMUST00000022567 Annotated NA Included I1 1 -1.28800844488605e-05 6.00717755965729e-05 2.86193122026739e-05 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr14_-_30006849_30006874 ENSMUST00000122205.8 0 chr14:30006163-30008731 0 25 ACTATTCAGTGTGGCTCTGAGACAG 1 86.6696166289 1.19506896544 2.25508500762e-12 chr14_-_30006849_30006874|86.6696166289|1.19506896544 3.94018151439468e-13 IN ENSMUST00000122205 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr14_-_30050233_30050260 ENSMUST00000224785.1 341 chr14:30049120-30051369 341 27 AACCCGCTATTACGAGACTTACATTAG 1 78.7024744569 4.06277421405 0 chr14_-_30050233_30050260|78.7024744569|4.06277421405 0 IN ENSMUST00000224785 Annotated NA Neuro-Muscular NM5 7 0.0237537134786083 -0.0224911581524809 -0.0373487758936313 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_30128771_30128798 ENSMUST00000112250.4 0 chr14:30124942-30130116,chr14:30124942-30129788 0 27 TCAGGCCATCTCGAAATCCAAACTCAG 1 88.2302239717 4.06625814399 0 chr14_-_30128771_30128798|88.2302239717|4.06625814399 0 IN ENSMUST00000112250 Annotated Alt5 Included I2 10 0.00484419279408588 -0.00057425349249208 -0.0294540069761273 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_30915450_30915480 ENSMUST00000227995.1 0 chr14:30912010-30915631 0 30 GCCTTGAATGACCTGACCTTCACAGAGGAG 1 77.2236954194 1.20585293988 0 chr14_-_30915450_30915480|77.2236954194|1.20585293988 0 IN ENSMUST00000227995 Annotated Alt3 Excluded E3 2 -0.000956629271584383 0.00895621407645282 -0.00397271035643954 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_30922819_30922840 ENSMUST00000006697.16 0 chr14:30922036-30923456 0 21 AAACGGAGCCTCCCAGAGGGG 1 85.5987016299 1.74968000278 3.17186277243e-10 chr14_-_30922819_30922840|85.5987016299|1.74968000278 6.13341599731143e-11 IN ENSMUST00000006697 Annotated NA Included I1 1 -3.89538349997952e-08 -3.56175806641554e-07 1.35405236246269e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_30932864_30932885 ENSMUST00000006704.16 0 chr14:30932479-30933260 0 21 AGATGGTGGGACCCAGAAGAA 1 86.1060716499 1.36727999866 1.71894498635e-10 chr14_-_30932864_30932885|86.1060716499|1.36727999866 3.15685255714016e-11 IN ENSMUST00000006704 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr14_-_30933260_30933275 ENSMUST00000006704.16 0 chr14:30932885-30933357 0 15 ATTCTCAGCCCTTAG 1 88.7399763347 1.07621052979 4.21889037483e-07 chr14_-_30933260_30933275|88.7399763347|1.07621052979 6.59936942870587e-08 IN ENSMUST00000006704 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr14_-_30942893_30942914 ENSMUST00000006704.16 0 chr14:30942626-30943158,chr14:30942638-30943158 0 21 AAGCGACACGCTGTGGACACT 1 84.1317997811 1.26004001021 1.12549969344e-10 chr14_-_30942893_30942914|84.1317997811|1.26004001021 2.61181076766093e-11 IN ENSMUST00000006704 Annotated Alt3 Included I2 10 -4.82496916442452e-05 -0.00922808165689608 0.0075275757823412 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_31139296_31139324 ENSMUST00000159208.7 0 chr14:31139203-31140147 0 28 CAGTGACATCTTTTGTGAACCCTTTGAT 1 81.0515337749 1.29350000329 0 chr14_-_31139296_31139324|81.0515337749|1.29350000329 0 IN ENSMUST00000159208 Annotated Alt5 Excluded E2 3 0.000703762800218735 -0.000215871706886097 0.00119799513679929 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_31544658_31544685 ENSMUST00000112027.8 0 chr14:31544032-31545056 0 27 GGTTTCCCTGGATCCAGAGGGGAAAAG 1 86.3275605018 2.8161613273 0 chr14_-_31544658_31544685|86.3275605018|2.8161613273 0 IN ENSMUST00000112027 Annotated NA Included I1 1 1.09661219576991e-05 -8.55331437089318e-07 2.23032784511664e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_31549098_31549125 ENSMUST00000112027.8 0 chr14:31547518-31549456 0 27 GGGGACCTTGGCCGCCCAGGAAGGAAG 1 82.7253542035 2.68764516255 0 chr14_-_31549098_31549125|82.7253542035|2.68764516255 0 IN ENSMUST00000112027 Annotated NA Included I1 1 1.78863121060588e-05 -2.08677866962487e-06 5.55413743275671e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_31634272_31634279 ENSMUST00000127204.8 4 chr14:31632968-31635743 4 7 GCCAGGA 1 72.7461679408 3.31818185679 0.000658771945611 chr14_-_31634272_31634279|72.7461679408|3.31818185679 0.000628015853897046 IN ENSMUST00000127204 Novel Alt3 Excluded E2 3 -0.00162602348680872 0.00251906332956029 -0.00133911525856642 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_31720105_31720132 ENSMUST00000227863.1 0 chr14:31719415-31721845 0 27 ATTGCAAGTGAAACTCCTTTAGATGTT 1 81.67159898 5.06177419977 0 chr14_-_31720105_31720132|81.67159898|5.06177419977 0 IN ENSMUST00000227863 Annotated NA Included I1 1 -5.47323308302738e-39 1.2239042333003e-38 1.68744242249945e-38 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_33388799_33388826 ENSMUST00000111942.1 0 chr14:33387296-33392941 0 27 CTGACTCAGAGCATAACAAACTTAAAG 1 88.438385513 3.89422578869 0 chr14_-_33388799_33388826|88.438385513|3.89422578869 0 IN ENSMUST00000111942 Annotated Alt5 Excluded E3 2 -0.00149588142406041 -0.00233041447991811 -0.00340539421635339 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_34569712_34569727 ENSMUST00000064098.13 931 chr14:34567567-34571717,chr14:34567567-34576985 859,72 15 GGCGTCTCCGCTGGC 1 78.286047794 2.30384209909 1.50284903411e-08 chr14_-_34569712_34569727|78.286047794|2.30384209909 9.11171427198099e-09 IN ENSMUST00000064098 Annotated NA Non-Neuronal NN2 24 -0.0145130282443596 0.0411955906142248 0.0354991717794449 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_34572989_34573012 ENSMUST00000090040.11 0 chr14:34571921-34578594,chr14:34567567-34576985,chr14:34571921-34576985 0 23 GTGGTAGCCAATTCTCCAGCCAA 1 87.5485631139 2.8689259379 7.15800752005e-11 chr14_-_34572989_34573012|87.5485631139|2.8689259379 1.17659215703725e-11 IN ENSMUST00000090040 Annotated NA Non-Neuronal NN2 24 -0.0298017654121561 0.0292580017375026 0.0288016229833373 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_38509329_38509356 ENSMUST00000166968.8 0 chr14:38407216-38668217 0 27 CAGACCACTTGGGGATTGAATTCATGG 1 72.9476313002 2.61219352388 0 chr14_-_38509329_38509356|72.9476313002|2.61219352388 0 IN ENSMUST00000166968 Annotated NA Included I1 1 -3.48561321937263e-05 0.000167313165008662 7.32575093558565e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_45294510_45294537 ENSMUST00000022378.8 0 chr14:45294440-45299045,chr14:45294396-45295971 0 27 AGAACACATTTTACAACTGGCTAGAAG 1 86.5247080223 2.94238711557 0 chr14_-_45294510_45294537|86.5247080223|2.94238711557 0 IN ENSMUST00000022378 Annotated NA Included I1 1 3.71422665489314e-42 1.41191991086939e-41 -1.31359032473255e-42 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_45295971_45295983 ENSMUST00000022378.8 0 chr14:45294440-45299045,chr14:45294537-45299045 0 12 GAAAAAGTAAAG 1 92.9776467512 1.65062497021 0.000267708168247 chr14_-_45295971_45295983|92.9776467512|1.65062497021 4.82311608526187e-05 IN ENSMUST00000022378 Annotated NA Included I1 1 1.65079303157474e-94 1.78073978879436e-95 1.17948610476964e-94 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_45380641_45380645 ENSMUST00000046191.8 1 chr14:45378486-45380936 1 4 GCAA 1 68.7852981673 0.369500001892 0.0365765528648 chr14_-_45380641_45380645|68.7852981673|0.369500001892 0.0364255608595588 IN ENSMUST00000046191 Novel NA Excluded E2 3 -0.00165740087468947 0.00150531887474574 -0.00463274587692554 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_45462714_45462735 ENSMUST00000045905.13 624 chr14:45462240-45464723 624 21 CCAGGCTGTGTAAGAGATTTG 1 80.7105134491 4.62015995532 2.18314255562e-12 chr14_-_45462714_45462735|80.7105134491|4.62015995532 8.86291040558262e-13 IN ENSMUST00000045905 Missing in GENCODE NA Excluded E3 2 0.0124310840246909 -0.0252229044254539 -0.00684700118811672 TRUE TRUE TRUE FALSE FALSE FALSE chr14_-_45628853_45628874 ENSMUST00000111828.3 121 chr14:45620840-45629579 121 21 GCAGTGGGATCAACTACTCTG 1 84.6492516007 2.44295999169 7.73958674927e-12 chr14_-_45628853_45628874|84.6492516007|2.44295999169 1.6752155218569e-12 IN ENSMUST00000111828 Annotated Alt3 Neuronal N3 17 0.0445700985329052 0.0162042390182267 0.00495740127534336 TRUE TRUE TRUE 15.5 1 FALSE FALSE FALSE chr14_-_49039354_49039383 ENSMUST00000162175.8 0 chr14:49037782-49048703,chr14:49037782-49042484 0 29 GTTTTCAGAAGTAAAATCAAAAATTGCAA 1 88.9742400697 3.88733334794 0 chr14_-_49039354_49039383|88.9742400697|3.88733334794 0 IN ENSMUST00000162175 Annotated NA Included I1 1 -1.88683839509591e-115 -1.2609453640646e-116 -2.89346554984812e-115 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_52098014_52098040 ENSMUST00000111610.11 0 chr14:52084391-52098315,chr14:52084391-52103888,chr14:52084416-52103888 0 26 TGAGATTTTTTTGATCTTCAGCTACA 1 85.5266789105 3.73363337517 3.07953662571e-12 chr14_-_52098014_52098040|85.5266789105|3.73363337517 6.0018656711236e-13 IN ENSMUST00000111610 Annotated Alt5_3 Other O2 21 -0.000305854966244707 0.0117549295198291 -0.0254643469596925 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_54963379_54963407 ENSMUST00000081857.13 0 chr14:54963132-54963501 0 28 ATCGGGAGAATCAGTCCATCCTCATCAC 1 83.3067840188 3.54484375915 0 chr14_-_54963379_54963407|83.3067840188|3.54484375915 0 IN ENSMUST00000081857 Annotated NA Included I1 1 6.21764149265596e-06 -1.33696868374024e-06 2.22420327475255e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_54991715_54991743 ENSMUST00000102803.10 0 chr14:54991200-54991837 0 28 ATCGGGAGAATCAGTCCATCCTCATCAC 1 85.4868350859 3.38143749622 0 chr14_-_54991715_54991743|85.4868350859|3.38143749622 0 IN ENSMUST00000102803 Annotated NA Included I1 1 -1.37258422235015e-06 3.9170053807511e-07 -6.38949682122034e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_55899719_55899729 ENSMUST00000227712.1 37 chr14:55899305-55899813 37 10 AGTGAACTCA 1 77.916853672 1.36707140718 1.84029171757e-06 chr14_-_55899719_55899729|77.916853672|1.36707140718 1.1765730157931e-06 IN ENSMUST00000227712 Annotated Alt3 Excluded E1 6 -0.000169519934015845 -0.000414252802956577 -0.00130366569076068 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_57342180_57342195 ENSMUST00000022517.8 8 chr14:57313129-57362921 8 15 ATACGGTGGAGCAGG 1 81.2756121301 -0.182157889989 1.81073102734e-07 chr14_-_57342180_57342195|81.2756121301|-0.182157889989 6.65830087731578e-08 IN ENSMUST00000022517 Missing in GENCODE NA Excluded E1 6 -0.000139215003467792 0.000304403003842179 -0.00030850696536603 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_57342180_57342198 ENSMUST00000022517.8 6 chr14:57313129-57362921 6 18 CAGATACGGTGGAGCAGG 1 82.7603642886 -0.150818178092 2.8290969567e-09 chr14_-_57342180_57342198|82.7603642886|-0.150818178092 8.08486944059439e-10 IN ENSMUST00000022517 Missing in GENCODE Alt3 Excluded E1 6 -0.000208034783521219 -0.00013935606489977 -0.000358217717108076 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_57878432_57878459 ENSMUST00000089473.4 0 chr14:57873996-57890062 0 27 GTACTATTTCCAGAACAGGAGAGAAAG 1 90.361005422 1.44890323744 0 chr14_-_57878432_57878459|90.361005422|1.44890323744 0 IN ENSMUST00000089473 Annotated NA Included I1 1 -4.18200748063125e-118 -7.81689559008841e-119 -8.20518552473146e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_57932706_57932729 ENSMUST00000022543.9 81 chr14:57932303-57943587 81 23 ACTGGTACAAATGACTCTGAAAG 1 82.6357228614 0.915037036218 0 chr14_-_57932706_57932729|82.6357228614|0.915037036218 0 IN ENSMUST00000022543 Annotated NA Excluded E1 6 0.0045881510168588 0.00244999547539744 7.61910362096753e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_60240773_60240798 ENSMUST00000225805.1 0 chr14:60239546-60242546 0 25 GTGATAAAACGGGAACAAGGCCAGA 1 80.3613448195 3.33541382592 2.63877808493e-12 chr14_-_60240773_60240798|80.3613448195|3.33541382592 1.13875575635802e-12 IN ENSMUST00000225805 Annotated Alt5 Other O1 4 -0.000641834457772997 0.00246048471988586 -0.00308299193942207 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_61391547_61391577 ENSMUST00000022496.8 0 chr14:61391451-61391755 0 30 CAAAATGTAACACTAGAAGCTATATTACAG 1 86.6317408268 5.00508825043 0 chr14_-_61391547_61391577|86.6317408268|5.00508825043 0 IN ENSMUST00000022496 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_66095685_66095712 ENSMUST00000224698.1 0 chr14:66094823-66098803 0 27 GAGATGGTGACATTCCTGGATAAGCTG 1 84.6993498586 2.06216127065 0 chr14_-_66095685_66095712|84.6993498586|2.06216127065 0 IN ENSMUST00000224698 Annotated NA Included I1 1 -4.96353817605272e-29 -2.3379599576789e-29 4.8594480721801e-29 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_66158047_66158072 ENSMUST00000022622.13 0 chr14:66157107-66158383,chr14:66157095-66158383 0 25 ACTCCAGAGAAGGAGGCCGGCTACA 1 83.6728707369 2.40272415095 1.10755848937e-12 chr14_-_66158047_66158072|83.6728707369|2.40272415095 2.74558153989801e-13 IN ENSMUST00000022622 Annotated Alt3 Included I2 10 -0.00242077022413662 -0.00217686915288042 0.00392383840205392 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_67008169_67008193 ENSMUST00000111115.7 76 chr14:66999704-67008687 76 24 TCTGAAAATTCCCAAGTTTCTCAA 1 88.1151464435 -0.184892858611 0 chr14_-_67008169_67008193|88.1151464435|-0.184892858611 0 IN ENSMUST00000111115 Novel NA Excluded E2 3 -0.000710427680890283 -2.6778348799291e-05 0.00592608219122224 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_70220016_70220046 ENSMUST00000228911.1 0 chr14:70218277-70224309 0 30 CCAAACAAGAAGCCGCAGAGGAGCGGGAAG 1 82.486843683 3.02405881882 0 chr14_-_70220016_70220046|82.486843683|3.02405881882 0 IN ENSMUST00000228911 Annotated NA Included I1 1 -2.84293176019995e-39 2.17433840093118e-39 5.99771107861518e-39 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_70225927_70225954 ENSMUST00000228911.1 0 chr14:70225048-70235139 0 27 ATCACTACATTTCAAGCTGTCCAAAAG 1 78.7609972322 2.89938703876 0 chr14_-_70225927_70225954|78.7609972322|2.89938703876 0 IN ENSMUST00000228911 Annotated NA Excluded E2 3 -0.00152426475653417 -0.00230340344898156 0.00602078751317442 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_70605540_70605548 ENSMUST00000022694.16 0 chr14:70605362-70605692,chr14:70605372-70605692,chr14:70605048-70605692 0 8 GCCTGCAG 1 87.5894082132 2.42924999197 0.00468843088724 chr14_-_70605540_70605548|87.5894082132|2.42924999197 0.000768859093284946 IN ENSMUST00000022694 Annotated NA Included I1 1 -2.67359874556189e-34 -1.32267192583791e-32 1.96269393881823e-33 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_70615398_70615428 ENSMUST00000022694.16 1 chr14:70615290-70615613 1 30 AAAAGTGCAGGAAGTCCCTGCCTTCACAAG 1 78.1914100788 -0.332647056072 0 chr14_-_70615398_70615428|78.1914100788|-0.332647056072 0 IN ENSMUST00000022694 Novel NA Excluded E1 6 -9.61916590786306e-05 0.000131524797347045 0.000350382053184517 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_75996908_75996927 ENSMUST00000088922.4 0 chr14:75995565-76007704 0 19 AAATCAAGGAAGGACTGAG 1 89.2390254173 2.67217389462 4.40777502275e-08 chr14_-_75996908_75996927|89.2390254173|2.67217389462 6.83222145525519e-09 IN ENSMUST00000088922 Annotated NA Included I1 1 1.27985706173796e-129 -4.4251934357485e-131 1.45617439076145e-129 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_77827555_77827575 ENSMUST00000226459.1 4 chr14:77826470-77840167 4 20 ATCTTGATATGAAAATGTCA 1 68.8521073534 1.00483334064 4.85762541302e-11 chr14_-_77827555_77827575|68.8521073534|1.00483334064 4.83663109562826e-11 IN ENSMUST00000226459 Novel Alt3 Excluded E1 6 -5.08817518279892e-05 3.99185301009034e-05 -5.48218193188317e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_77861216_77861242 ENSMUST00000226459.1 3 chr14:77856990-77874797 3 26 ACCCTGTTGACTGATCCGCAGACCAG 1 85.5410074956 0.258874990046 0 chr14_-_77861216_77861242|85.5410074956|0.258874990046 0 IN ENSMUST00000226459 Novel NA Excluded E1 6 -6.62862359356874e-05 8.01488401011705e-05 5.45027866141491e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_8361475_8361496 ENSMUST00000022269.6 0 chr14:8358455-8364788 0 21 GCATAACCCCCAAGGACATCC 1 78.8251133348 -0.000480000376701 1.4342731447e-09 chr14_-_8361475_8361496|78.8251133348|-0.000480000376701 8.0079010089662e-10 IN ENSMUST00000022269 Annotated NA Included I1 1 0.000114016863761351 0.000322043600192112 0.000113096257305223 TRUE FALSE FALSE FALSE FALSE FALSE chr14_-_84472212_84472242 ENSMUST00000228125.1 0 chr14:84470731-84475888,chr14:84470731-84476008 0 30 ATGGACACTGCCCATTTACTGGGACTAGAG 1 89.3448152602 -0.174647058278 0 chr14_-_84472212_84472242|89.3448152602|-0.174647058278 0 IN ENSMUST00000228125 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr14_-_9862016_9862046 ENSMUST00000162278.7 0 chr14:9763808-9870029 0 30 GATGGTCCTGAAGCTGGGCAGACTGTGAAG 1 90.8192094053 3.85002946065 0 chr14_-_9862016_9862046|90.8192094053|3.85002946065 0 IN ENSMUST00000162278 Annotated NA Included I1 1 1.03137972591013e-25 -1.95941181089565e-24 1.80910032562225e-25 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_102081876_102081883 ENSMUST00000169681.1 21 chr15:102073963+102081975 21 7 TTATCTG 1 77.3495798082 -0.375181816836 0.00190576899055 chr15_+_102081876_102081883|77.3495798082|-0.375181816836 0.00131391805009473 IN ENSMUST00000169681 Novel NA Excluded E1 6 0.000177153814314892 0.000124371301859645 4.77968243995054e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_102115736_102115766 ENSMUST00000046144.9 0 chr15:102115629+102115857 0 30 ATGGACCAACCCAGATGGAGCCACCTCCAA 1 88.3993358028 2.2528235253 0 chr15_+_102115736_102115766|88.3993358028|2.2528235253 0 IN ENSMUST00000046144 Annotated NA Included I1 1 9.59648073218875e-57 2.46894041496527e-57 -3.71984330967475e-57 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_102474130_102474154 ENSMUST00000077037.11 0 chr15:102473402+102474246 0 24 GAAGTTGGCAGTATCATCGGAAAG 1 89.9021109044 5.58803570856 2.8990143619e-12 chr15_+_102474130_102474154|89.9021109044|5.58803570856 4.48752146553488e-13 IN ENSMUST00000077037 Annotated NA Included I1 1 -7.7159178383015e-140 -2.42111682768209e-140 -1.57739679343111e-139 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_103243059_103243080 ENSMUST00000087351.7 1 chr15:103242718+103243624 1 21 GCGGCTTTGGCGGTGGTAGTG 1 64.8064399774 2.60488001347 7.82485187756e-13 chr15_+_103243059_103243080|64.8064399774|2.60488001347 7.82374165453348e-13 IN ENSMUST00000087351 Novel Alt5 Excluded E3 2 0.00139884499348893 0.0005257731545197 0.000376390691941072 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_12135266_12135290 ENSMUST00000122941.7 289 chr15:12117947+12136395,chr15:12118338+12136395 21,268 24 TTCTGTTCTCTGGAGCAGCATGGA 1 78.6392905755 1.93646429905 0 chr15_+_12135266_12135290|78.6392905755|1.93646429905 0 IN ENSMUST00000122941 Annotated NA Excluded E2 3 -0.00540548042769061 0.00145424102227174 0.000719216671346397 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_12259618_12259646 ENSMUST00000071993.12 0 chr15:12230334+12261840 0 28 AAAGCAGCAGCTGGCTTGATATAATCAG 1 80.7497703197 3.2879062288 0 chr15_+_12259618_12259646|80.7497703197|3.2879062288 0 IN ENSMUST00000071993 Annotated Alt5 Excluded E2 3 3.79920508097279e-05 0.00166256480120711 -0.00375597770828049 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_12882415_12882440 ENSMUST00000169061.7 30 chr15:12881747+12883165 30 25 TATGAAGCAGTGAACCAGGCCCTGT 1 73.5213271322 2.07444825948 0 chr15_+_12882415_12882440|73.5213271322|2.07444825948 0 IN ENSMUST00000169061 Novel NA Excluded E1 6 0.000590949310635364 0.000163690101790725 0.00103342443473431 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_20988982_20989010 ENSMUST00000226407.1 35 chr15:20833392+21111333 35 28 GTAAAGCGTTTGACTCACCCTTAAGAAG 1 87.9005284071 -0.403562508407 0 chr15_+_20988982_20989010|87.9005284071|-0.403562508407 0 IN ENSMUST00000226407 Novel NA Excluded E1 6 0.000160802425645426 0.000116125926792571 -0.000874210714725924 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_25725071_25725085 ENSMUST00000110457.7 0 chr15:25724008+25725195 0 14 ATTTATTAGAAAAA 1 79.1322284302 4.70916667912 4.35485488459e-06 chr15_+_25725071_25725085|79.1322284302|4.70916667912 2.31463272581944e-06 IN ENSMUST00000110457 Annotated NA Included I1 1 -2.41604998998622e-37 -5.94684786300063e-37 -3.70679959386586e-37 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_32640716_32640734 ENSMUST00000067458.6 55 chr15:32631397+32640966 55 18 GAAGTTCCATCCTGCATT 1 75.9745535377 2.26095453108 5.42684119864e-10 chr15_+_32640716_32640734|75.9745535377|2.26095453108 4.34210223332343e-10 IN ENSMUST00000067458 Missing in GENCODE NA Neuronal N6 15 0.0115464800443143 0.0053823639295126 0.0030003590937768 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_38677518_38677526 ENSMUST00000228475.1 1 chr15:38676113+38679319 1 8 TTGACTTG 1 77.8540495844 4.37416670471 0.000190359120489 chr15_+_38677518_38677526|77.8540495844|4.37416670471 0.000122771113633235 IN ENSMUST00000228475 Novel Alt3 Excluded E1 6 7.31517537473413e-05 -6.84219565549756e-05 1.97739077861636e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_39306091_39306103 ENSMUST00000082054.11 573 chr15:39292312+39345309 573 12 GAGGACAAAGTG 1 75.6627082828 3.93599997461 1.23355242496e-05 chr15_+_39306091_39306103|75.6627082828|3.93599997461 1.0138794227732e-05 IN ENSMUST00000082054 Missing in GENCODE NA Neuro-Muscular NM1 12 0.0435630296460849 -0.123173701613767 -0.00708894471572821 TRUE TRUE FALSE 14.5 1 FALSE FALSE FALSE chr15_+_39469195_39469202 ENSMUST00000082054.11 61 chr15:39462610+39472333 61 7 GGTTCAG 1 84.4057347072 5.87509096753 0.00231284276429 chr15_+_39469195_39469202|84.4057347072|5.87509096753 0.000516930189562559 IN ENSMUST00000082054 Missing in GENCODE NA Excluded E1 6 0.000961071864024234 -0.00259635320838215 0.00315675367343077 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_39469276_39469293 ENSMUST00000082054.11 61 chr15:39462610+39472333 61 17 TAGGAACACTTTTTTTG 1 66.5621577648 2.4094285525 2.20597939915e-09 chr15_+_39469276_39469293|66.5621577648|2.4094285525 2.20415852236755e-09 IN ENSMUST00000082054 Novel NA Excluded E1 6 -4.46335127993385e-05 1.82242582129936e-05 0.000888072064945926 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_39482188_39482215 ENSMUST00000082054.11 408 chr15:39478710+39506965 408 27 ATAAAGCCTTATGTTCATATAATTCAG 1 83.3633732983 3.54019357312 0 chr15_+_39482188_39482215|83.3633732983|3.54019357312 0 IN ENSMUST00000082054 Missing in GENCODE NA Excluded E4 11 0.00116379754058886 -0.0134261024323082 0.0544400017811413 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_39555067_39555097 ENSMUST00000082054.11 35 chr15:39535981+39566942 35 30 ATGTGGACTCCACAAGGAAAAGAAATACAG 1 73.1806520735 2.69714707826 0 chr15_+_39555067_39555097|73.1806520735|2.69714707826 0 IN ENSMUST00000082054 Missing in GENCODE NA Excluded E2 3 0.00105282981829961 -0.00227627838166215 0.0161270558753768 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_41838251_41838279 ENSMUST00000166917.1 98 chr15:41826052+41848669,chr15:41826052+41850458,chr15:41831129+41850458 20,5,73 28 GGTAATGCTGGCCTCACAGAATGAGTTA 1 83.1011774541 0.706437505782 0 chr15_+_41838251_41838279|83.1011774541|0.706437505782 0 IN ENSMUST00000166917 Missing in GENCODE NA Excluded E2 3 -0.0024432795196568 0.00366041569022994 -0.00236925861065662 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_44432745_44432748 ENSMUST00000226827.1 6 chr15:44432508+44433898,chr15:44432508+44433900 4,2 3 AAA 1 56.2458181679 0.370142853686 0.080949490933 chr15_+_44432745_44432748|56.2458181679|0.370142853686 0.0809494864964684 IN ENSMUST00000226827 Novel NA Excluded E1 6 2.69017889456157e-05 0.000135712564715787 -4.40332710888801e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_58152737_58152745 ENSMUST00000228761.1 29 chr15:58150656+58153579 29 8 TTTAGGAG 1 81.835704438 3.1227499644 0.000173494074274 chr15_+_58152737_58152745|81.835704438|3.1227499644 5.78888938864708e-05 IN ENSMUST00000228761 Novel Alt5 Excluded E1 6 -0.000329974704068936 -0.00140780356126827 -0.000115711751798134 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_6422234_6422255 ENSMUST00000159552.1 0 chr15:6419837+6435439 0 21 GTAATTGAACATGAACATCCA 1 78.1925494603 4.31840002768 3.54179974238e-09 chr15_+_6422234_6422255|78.1925494603|4.31840002768 2.17703710614359e-09 IN ENSMUST00000159552 Annotated Alt3 Excluded E2 3 0.00101048783503536 -0.00106461446727522 -5.20906831983317e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_6423925_6423952 ENSMUST00000078019.12 0 chr15:6419837+6435439,chr15:6422255+6435439,chr15:6423166+6424196 0 27 GTTGAAGAAGCCAACAAAGCAGAAGAG 1 84.6304690699 2.35435482018 0 chr15_+_6423925_6423952|84.6304690699|2.35435482018 0 IN ENSMUST00000078019 Annotated NA Included I1 1 1.63466366475267e-08 7.36312287700885e-08 -5.47610376530644e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_6632264_6632284 ENSMUST00000090461.11 0 chr15:6630118+6632776 0 20 GTACTGGAAATCTAGAAGAG 1 82.0327483783 1.88549999194 2.39560904447e-09 chr15_+_6632264_6632284|82.0327483783|1.88549999194 7.72834352069651e-10 IN ENSMUST00000090461 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_+_6642556_6642579 ENSMUST00000090461.11 0 chr15:6640585+6643693 0 23 CCACGGTCAGAGCGGAAGTGGAG 1 81.7274286719 2.58296297932 4.37836433775e-11 chr15_+_6642556_6642579|81.7274286719|2.58296297932 1.48839829350322e-11 IN ENSMUST00000090461 Annotated NA Included I1 1 6.67471282575989e-07 3.49117834417569e-06 -1.10975471245921e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_6646636_6646662 ENSMUST00000090461.11 0 chr15:6643763+6648853,chr15:6644899+6648853 0 26 TCTCCCTTCTCAGCATAAGCAACTGG 1 82.9487074977 1.65319999233 8.71303029726e-13 chr15_+_6646636_6646662|82.9487074977|1.65319999233 2.41584530158434e-13 IN ENSMUST00000090461 Annotated Alt5 Included I2 10 0.000494454470491769 0.00347499024829693 -0.00196062927433092 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_74575838_74575847 ENSMUST00000186360.6 6 chr15:74574168+74580564 6 9 GTGAACATG 1 75.6850125382 5.1999230018 9.51095894052e-05 chr15_+_74575838_74575847|75.6850125382|5.1999230018 7.80285956976101e-05 IN ENSMUST00000186360 Novel Alt3 Excluded E1 6 -0.000538625262177262 0.00191004949262804 0.00131455116726855 TRUE TRUE TRUE 11.5 -1 12.5 -1 FALSE FALSE FALSE chr15_+_74583762_74583783 ENSMUST00000042035.15 21 chr15:74582987+74584377 21 21 GGGAGGCTGGTGCTGGCCCAG 1 81.1998950526 -0.267159994901 1.21236354289e-12 chr15_+_74583762_74583783|81.1998950526|-0.267159994901 4.51749748719976e-13 IN ENSMUST00000042035 Novel NA Excluded E1 6 -0.000140895554581088 -0.000385408254417857 0.00147305814420134 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_75713001_75713024 ENSMUST00000023244.5 0 chr15:75712451+75713218 0 23 CCAAGACTCACCAGACCCCAGAG 1 79.1423102299 2.60433335933 1.05160324892e-11 chr15_+_75713001_75713024|79.1423102299|2.60433335933 5.58020296637096e-12 IN ENSMUST00000023244 Annotated Alt3 Excluded E2 3 0.000561175974498695 0.00219266601663436 -0.00168233215733294 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_75995071_75995101 ENSMUST00000161961.1 0 chr15:75994943+75995233 0 30 AGGACCTTCCGTGAGATTATGCTTCTCAAG 1 88.2323646278 2.20797062282 0 chr15_+_75995071_75995101|88.2323646278|2.20797062282 0 IN ENSMUST00000161961 Annotated NA Included I1 1 3.87107150327235e-08 2.82185425955501e-05 -9.77536586970419e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_76432371_76432398 ENSMUST00000161305.7 181 chr15:76432295+76433273,chr15:76432295+76433537 177,4 27 GTTCTGGGAATAAAGGTAGAGACCAAG 1 80.7879568622 4.1079032373 0 chr15_+_76432371_76432398|80.7879568622|4.1079032373 0 IN ENSMUST00000161305 Annotated NA Non-Neuronal NN1 23 -0.0666254714911412 -0.0169742571461067 0.00604358888524209 TRUE TRUE TRUE 12.5 -1 FALSE FALSE FALSE chr15_+_80864384_80864406 ENSMUST00000067689.8 0 chr15:80858768+80876316 0 22 GTCACGGAACAAAAAACCAAAG 1 93.0654481776 3.00665389574 9.96010385279e-10 chr15_+_80864384_80864406|93.0654481776|3.00665389574 1.80889081491387e-10 IN ENSMUST00000067689 Annotated NA Included I1 1 3.55150560226894e-68 -2.28326618059816e-68 -8.16067790055361e-68 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_83102624_83102644 ENSMUST00000168029.7 0 chr15:83102340+83102933 0 20 GTGGCTGTGTGGGTGGCACG 1 86.3165464809 0.670249978624 5.17502485309e-10 chr15_+_83102624_83102644|86.3165464809|0.670249978624 9.32020016719548e-11 IN ENSMUST00000168029 Annotated Alt3 Included I2 10 0.000443011307420458 -0.00203229349133216 0.00496674741566838 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_83790161_83790190 ENSMUST00000046168.11 15 chr15:83780107+83791953 15 29 ATCCACTGGAACTGGAGTTATAGACAGCT 1 72.128692239 None 0 chr15_+_83790161_83790190|72.128692239|None 0 IN ENSMUST00000046168 Novel NA Excluded E1 6 0.00074877591363666 -0.00138062361229294 -0.00119759120099602 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_84297965_84297985 ENSMUST00000023072.6 0 chr15:84295615+84303407 0 20 GATCATGATGGGCCGGTTTG 1 87.8066502796 3.56566656629 7.06495484337e-09 chr15_+_84297965_84297985|87.8066502796|3.56566656629 1.14512110904741e-09 IN ENSMUST00000023072 Annotated NA Included I1 1 6.51131851351111e-17 -1.35247814646024e-17 -1.02898797359266e-16 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_84332690_84332713 ENSMUST00000023074.8 0 chr15:84332346+84334341 0 23 GTCACACAAGGACCAGCCTTTAC 1 81.9840311889 0.376592602995 2.79669620795e-11 chr15_+_84332690_84332713|81.9840311889|0.376592602995 9.09750053068592e-12 IN ENSMUST00000023074 Annotated NA Included I1 1 6.44595492444597e-08 2.24769627063316e-07 -9.36880594624876e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_85882228_85882251 ENSMUST00000162491.7 21 chr15:85879458+85882673 21 23 CCTCCCAAATACTGGAATCATAG 1 80.5267968192 0.129999998543 0 chr15_+_85882228_85882251|80.5267968192|0.129999998543 0 IN ENSMUST00000162491 Novel NA Excluded E1 6 0.000112644705718189 -6.09316202266166e-06 0.000371213005481235 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_86125856_86125882 ENSMUST00000088931.9 0 chr15:86125256+86126988 0 26 GTTAACTGAAAACATGAGAAGACTGA 1 85.661920038 3.87469997853 3.77919917582e-13 chr15_+_86125856_86125882|85.661920038|3.87469997853 7.26085858104852e-14 IN ENSMUST00000088931 Annotated NA Included I1 1 -9.86632122081131e-66 2.07565623030809e-65 2.78825935698215e-65 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_89538014_89538038 ENSMUST00000066545.13 177 chr15:89533454+89543099 177 24 CTTCCATTCGGAGAAGAAAAGGGG 1 83.8781320345 3.10107137665 0 chr15_+_89538014_89538038|83.8781320345|3.10107137665 0 IN ENSMUST00000066545 Annotated NA Muscular M1 22 0.0167514534438864 -0.134981713244213 0.0864595205447207 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_89556720_89556748 ENSMUST00000109309.7 87 chr15:89549882+89557734 87 28 CTGCGCGGTGGTCCCGAGTGCCGGCTGT 1 74.8825081915 1.94109374651 0 chr15_+_89556720_89556748|74.8825081915|1.94109374651 0 IN ENSMUST00000109309 Missing in GENCODE NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_+_92077994_92078010 ENSMUST00000169825.7 1 chr15:92051323+92216315 1 16 ATTTACTAAACTGGCT 1 68.6538549781 0.0166000030935 1.50041148728e-07 chr15_+_92077994_92078010|68.6538549781|0.0166000030935 1.49475337329896e-07 IN ENSMUST00000169825 Novel NA Excluded E1 6 -0.00020578531394419 0.00159012150360852 -0.000459579376426077 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_98640958_98640978 ENSMUST00000109150.7 0 chr15:98640750+98641176 0 20 CCAAGCAGAAGCAAAAGCAG 1 80.8083621485 5.23016669104 3.65616870113e-10 chr15_+_98640958_98640978|80.8083621485|5.23016669104 1.45910616922151e-10 IN ENSMUST00000109150 Annotated NA Included I1 1 9.78027368918839e-30 -5.26233692413788e-29 -3.06969028449473e-29 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_99305165_99305193 ENSMUST00000128352.7 0 chr15:99304490+99305540,chr15:99304490+99305407 0 28 ACGGCTCCGGGTGCGGACACCGCCAGCT 1 79.4167630566 2.66628125031 0 chr15_+_99305165_99305193|79.4167630566|2.66628125031 0 IN ENSMUST00000128352 Annotated NA Included I1 1 8.54786675805296e-52 -1.45646740191833e-51 -2.32452320630756e-51 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_99305407_99305433 ENSMUST00000128352.7 0 chr15:99304490+99305540,chr15:99305193+99305540 0 26 CTGCTGTGGCTGGAACAGGCCCTCCG 1 83.6590945791 1.69720000476 7.03881397612e-14 chr15_+_99305407_99305433|83.6590945791|1.69720000476 1.75415237890775e-14 IN ENSMUST00000128352 Annotated Alt5 Other O1 4 -0.00259100592249496 0.00115247082910506 -0.00212649426192691 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_99306161_99306186 ENSMUST00000150641.7 0 chr15:99306071+99306395 0 25 CCCTCGTCAAACAAGAGTCTGCAGG 1 88.0818972207 1.95513792901 2.62012633812e-13 chr15_+_99306161_99306186|88.0818972207|1.95513792901 4.19664303308309e-14 IN ENSMUST00000150641 Annotated NA Included I1 1 7.67041502832117e-89 -7.36936232064063e-89 -2.14218540478004e-88 TRUE FALSE FALSE FALSE FALSE FALSE chr15_+_99727334_99727353 ENSMUST00000023761.2 237 chr15:99725848+99727644 237 19 ATTTATTTATTTATTATAT 1 88.3204767945 -0.119956507631 2.51958454101e-11 chr15_+_99727334_99727353|88.3204767945|-0.119956507631 3.99291710806438e-12 IN ENSMUST00000023761 Novel NA Excluded E1 6 3.00271806370512e-05 0.000230249412215391 -0.000478134791340902 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_100412233_100412262 ENSMUST00000136168.1 0 chr15:100410231-100422961 0 29 AATCCTATTCTAAGAGCACAGACCCTCAG 1 86.0969911249 1.0040606131 0 chr15_-_100412233_100412262|86.0969911249|1.0040606131 0 IN ENSMUST00000136168 Annotated Alt3 Excluded E2 3 0.00165075676121633 0.00089320397281737 -0.000630904742724188 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_10591586_10591615 ENSMUST00000090339.10 0 chr15:10587924-10592071,chr15:10589345-10592071 0 29 ATTTAAAGACTCCAACAAAACCAAAGCAG 1 87.6480690954 2.55372727707 0 chr15_-_10591586_10591615|87.6480690954|2.55372727707 0 IN ENSMUST00000090339 Annotated NA Included I1 1 1.60740007488041e-57 -5.86368259408648e-59 1.37023770316357e-58 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_13040847_13040869 ENSMUST00000036439.5 1 chr15:13034690-13040957 1 22 TAAGGCATACAGCCTGATCTAG 1 81.8568347852 0.96599999543 1.38578037934e-12 chr15_-_13040847_13040869|81.8568347852|0.96599999543 4.6074255521944e-13 IN ENSMUST00000036439 Novel NA Excluded E2 3 0.00425455692672102 0.00150948004851185 -0.00235279205929503 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_27741251_27741279 ENSMUST00000090247.6 0 chr15:27741078-27742383,chr15:27741078-27742371,chr15:27741078-27742303 0 28 CTTCTTAACCCCAACTACATTTATGACG 1 87.6283543434 4.52681247657 0 chr15_-_27741251_27741279|87.6283543434|4.52681247657 0 IN ENSMUST00000090247 Annotated NA Included I1 1 3.56573109792896e-33 -8.99198753075503e-33 -1.1364814828519e-32 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_31487937_31487952 ENSMUST00000090227.5 64 chr15:31486435-31488791 64 15 TGGATAAGTATTCTG 1 82.9071718643 0.170842112336 8.50195647217e-09 chr15_-_31487937_31487952|82.9071718643|0.170842112336 2.37275876724397e-09 IN ENSMUST00000090227 Novel NA Excluded E1 6 5.59645602863746e-05 0.00113885146602521 -0.00102512168503174 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_3335584_3335613 ENSMUST00000069451.10 23 chr15:3333525-3340918 23 29 GTGCTTCTCTGCCCTTCGGTATTCCTCAG 1 87.220835572 None 0 chr15_-_3335584_3335613|87.220835572|None 0 IN ENSMUST00000069451 Missing in GENCODE NA Excluded E1 6 -0.000460921793690155 0.000263501038594956 -0.000373470706644566 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_3346508_3346532 ENSMUST00000069451.10 0 chr15:3341091-3347471 0 24 GGAAAGCCAACGACAAGCTGCAAG 1 80.6601044509 0.281464281242 2.25668372877e-11 chr15_-_3346508_3346532|80.6601044509|0.281464281242 9.24305076921428e-12 IN ENSMUST00000069451 Annotated Alt3 Included I2 10 -0.00716580957829977 -0.000810477193119997 -0.0110086523008306 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_35114937_35114958 ENSMUST00000018476.13 474 chr15:35114657-35115564 474 21 CTGCATCTGAGTTGACAAACC 1 77.9961615274 1.06867998809 7.83373366176e-13 chr15_-_35114937_35114958|77.9961615274|1.06867998809 4.95270491285282e-13 IN ENSMUST00000018476 Annotated NA Neuronal N4 13 0.0461166023374015 0.0136045894617896 0.0600952195337538 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr15_-_3582999_3583012 ENSMUST00000161180.1 0 chr15:3458008-3583066 0 13 GCGAAACTCCGAG 1 76.0354586561 0.926294133177 0.00186152121582 chr15_-_3582999_3583012|76.0354586561|0.926294133177 0.00148119824060078 IN ENSMUST00000161180 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_35932244_35932274 ENSMUST00000014457.14 33 chr15:35932097-35935284 33 30 GAAAAGCTTTCAGTTTTTCATCAAGTGCAG 1 81.7770435558 None 0 chr15_-_35932244_35932274|81.7770435558|None 0 IN ENSMUST00000014457 Novel NA Excluded E1 6 6.30540542909317e-06 2.41393019408419e-06 -3.96979608854939e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_36792378_36792394 ENSMUST00000151635.1 2 chr15:36790988-36793167 2 16 GAGCGCTCGTTTTCCT 1 65.4576828026 -0.247249995917 1.96359906113e-09 chr15_-_36792378_36792394|65.4576828026|-0.247249995917 1.96291427556616e-09 IN ENSMUST00000151635 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_38493216_38493220 ENSMUST00000129589.7 1 chr15:38492356-38493473 1 4 AAAA 1 67.3776786815 -0.186749998829 0.0167797512259 chr15_-_38493216_38493220|67.3776786815|-0.186749998829 0.0167542611590721 IN ENSMUST00000129589 Novel NA Excluded E3 2 -0.000410623199647564 0.0016830047285464 0.00800926936534898 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_39904538_39904550 ENSMUST00000110305.2 2 chr15:39885141-39943603 2 12 GAGTGTCAACTG 1 83.9895497313 3.30150001869 1.36079272119e-05 chr15_-_39904538_39904550|83.9895497313|3.30150001869 3.22188757584385e-06 IN ENSMUST00000110305 Novel Alt5 Excluded E1 6 -0.00038524103907654 8.15293766302496e-05 -0.000105318551141379 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_44684722_44684743 ENSMUST00000110267.8 48 chr15:44683450-44718787 48 21 GAATGAAGTTCAGTATCACAG 1 86.2280545203 -0.282039995119 3.13633563565e-11 chr15_-_44684722_44684743|86.2280545203|-0.282039995119 5.69433389330243e-12 IN ENSMUST00000110267 Novel NA Excluded E1 6 0.000310967955648088 -0.0014131752509905 0.000325817397554694 TRUE TRUE FALSE 15.5 -1 FALSE FALSE FALSE chr15_-_51856174_51856196 ENSMUST00000022925.9 49 chr15:51842624-51865325 49 22 CCACACGTGGAAAAAATTGCAG 1 84.5230564716 0.516923065548 5.03486141668e-12 chr15_-_51856174_51856196|84.5230564716|0.516923065548 1.10789155627344e-12 IN ENSMUST00000022925 Novel NA Excluded E1 6 2.22473623973083e-05 5.70368506428809e-06 3.44899264656448e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_53657516_53657525 ENSMUST00000078673.13 871 chr15:53462216-53658349 871 9 GATGATAAA 1 76.5398593789 0.88776922226 0.00291814965497 chr15_-_53657516_53657525|76.5398593789|0.88776922226 0.00220946858565452 IN ENSMUST00000078673 Missing in GENCODE NA Neuro-Muscular NM4 16 0.0118404776147183 -0.039060238455325 -0.016134759577087 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_57879048_57879075 ENSMUST00000022993.6 0 chr15:57878580-57879999 0 27 ATTACTGGCTTAGCAATGGATATGCAG 1 79.3981186326 4.079999991 0 chr15_-_57879048_57879075|79.3981186326|4.079999991 0 IN ENSMUST00000022993 Annotated NA Included I1 1 -4.33265246724932e-116 -5.42432269859604e-117 -6.96876882735871e-116 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_58964496_58964508 ENSMUST00000228365.1 48 chr15:58956590-58968838 48 12 TGGACGCTCAGG 1 79.6956698291 2.25325000694 2.84798037797e-06 chr15_-_58964496_58964508|79.6956698291|2.25325000694 1.3783194175998e-06 IN ENSMUST00000228365 Annotated NA Excluded E2 3 -0.00379047789967874 0.00148215666753933 0.00903180826021472 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_63779528_63779555 ENSMUST00000110125.8 0 chr15:63778707-63779994,chr15:63778707-63779773 0 27 GAACAATTAAGGAGCCCACCCATCTAG 1 89.4338251214 -0.134677421722 0 chr15_-_63779528_63779555|89.4338251214|-0.134677421722 0 IN ENSMUST00000110125 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_63779773_63779803 ENSMUST00000110125.8 0 chr15:63779555-63779994,chr15:63778707-63779994 0 30 GCTCGTGGATAAATGACATCGATCCAATTG 1 85.7221691489 -0.649323531043 0 chr15_-_63779773_63779803|85.7221691489|-0.649323531043 0 IN ENSMUST00000110125 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_63827763_63827790 ENSMUST00000089900.9 0 chr15:63826931-63828023 0 27 GAAGAATACAGGAGCCCGCCCATCTAG 1 91.8524212357 -0.142516132925 0 chr15_-_63827763_63827790|91.8524212357|-0.142516132925 0 IN ENSMUST00000089900 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_63828023_63828053 ENSMUST00000089900.9 0 chr15:63827790-63828164 0 30 GCTTGTGGATAAATGACATCGTTCCAATTG 1 85.7221691489 -0.687705878716 0 chr15_-_63828023_63828053|85.7221691489|-0.687705878716 0 IN ENSMUST00000089900 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_63861183_63861210 ENSMUST00000185526.6 0 chr15:63860361-63861442 0 27 GAAGAATCCAGGAGCCCGCCCATCTAG 1 90.5727577413 -0.188903230873 0 chr15_-_63861183_63861210|90.5727577413|-0.188903230873 0 IN ENSMUST00000185526 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_63861442_63861472 ENSMUST00000185526.6 0 chr15:63861210-63861583 0 30 GTTTGTGGATAAATGACATCGAACCAATTG 1 86.7988155819 -0.42591176708 0 chr15_-_63861442_63861472|86.7988155819|-0.42591176708 0 IN ENSMUST00000185526 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_63894672_63894699 ENSMUST00000188108.6 0 chr15:63893878-63894929 0 27 GAACAATTGAGGAGCCTGCCAATCTAA 1 85.193392568 -0.221225800774 0 chr15_-_63894672_63894699|85.193392568|-0.221225800774 0 IN ENSMUST00000188108 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_63894929_63894959 ENSMUST00000188108.6 0 chr15:63894699-63895156 0 30 GCTCTTGGATAGATGACATCGATCCAATTG 1 85.7221691489 -0.581000002101 0 chr15_-_63894929_63894959|85.7221691489|-0.581000002101 0 IN ENSMUST00000188108 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_64153843_64153852 ENSMUST00000177083.7 1955 chr15:64152930-64158881,chr15:64152930-64158917 1462,493 9 TCTAGAAGA 1 73.8522311316 3.99892316415 8.84791813146e-05 chr15_-_64153843_64153852|73.8522311316|3.99892316415 8.12503495684069e-05 IN ENSMUST00000177083 Annotated NA Neuronal N1 18 0.0718512455740599 0.0327779936467727 0.0116975539730562 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr15_-_66016448_66016475 ENSMUST00000070256.8 0 chr15:66005974-66020286 0 27 GAAAGAACAACTGGAAGCAGCAGCCAG 1 79.2771715635 1.92667742554 0 chr15_-_66016448_66016475|79.2771715635|1.92667742554 0 IN ENSMUST00000070256 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_66946431_66946457 ENSMUST00000164675.7 0 chr15:66940167-66948462,chr15:66944834-66948462,chr15:66944834-66948450,chr15:66944838-66948440 0 26 GATGGTGCCCCTTCCTTCCCAGTGGG 1 77.9399865684 3.13000001851 7.93143328792e-13 chr15_-_66946431_66946457|77.9399865684|3.13000001851 5.05484543111834e-13 IN ENSMUST00000164675 Annotated Alt5 Excluded E2 3 -0.000392314789885543 0.000154142459136986 0.00180493912612824 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_71937586_71937616 ENSMUST00000159993.7 0 chr15:71937343-71937998 0 30 GTGCAGAGGGAAGGCCTGAAGGGAGAGCAG 1 86.54362866 1.84461763424 0 chr15_-_71937586_71937616|86.54362866|1.84461763424 0 IN ENSMUST00000159993 Annotated NA Included I1 1 1.11708563209956e-07 -1.20667035775172e-06 -7.48186122407814e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_7224644_7224668 ENSMUST00000058593.9 78 chr15:7222826-7231587 78 24 AGTGTGGGAACCACTGCCTCAATA 1 74.5025762623 4.39489284956 0 chr15_-_7224644_7224668|74.5025762623|4.39489284956 0 IN ENSMUST00000058593 Annotated NA Neuronal N6 15 0.0172102620404271 0.010416170471726 0.00162533104612402 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_73042176_73042203 ENSMUST00000089770.9 1114 chr15:73031643-73050594 1114 27 GGGCGCAAGAAGTTCTCATTGACCCAG 1 85.3939237063 4.87129031945 0 chr15_-_73042176_73042203|85.3939237063|4.87129031945 0 IN ENSMUST00000089770 Annotated NA Neuronal N3 17 0.0367553633766954 0.00926984419990745 0.0761331564430818 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr15_-_73055747_73055768 ENSMUST00000089770.9 37 chr15:73052307-73057921 37 21 TATGTTGTTGGGGCTGAAAAG 1 72.9392413094 4.1272800684 4.9640291877e-12 chr15_-_73055747_73055768|72.9392413094|4.1272800684 4.70745664671313e-12 IN ENSMUST00000089770 Novel NA Excluded E1 6 0.00013054835841597 -0.000431412430245116 0.00143035936157648 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_73211986_73211995 ENSMUST00000110036.9 5307 chr15:73210897-73215978 5307 9 CCGTGGAGG 1 75.8377587082 4.5726154034 7.55162339987e-05 chr15_-_73211986_73211995|75.8377587082|4.5726154034 6.11573396133158e-05 IN ENSMUST00000110036 Annotated NA Neuronal N2 8 0.0485064116022811 0.0240390226063014 -0.00581510817444396 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr15_-_73275620_73275637 ENSMUST00000226988.1 41 chr15:73274584-73276856 41 17 CTATGGAATAGATGAAG 1 69.6478789913 4.82080948353 5.11818143423e-10 chr15_-_73275620_73275637|69.6478789913|4.82080948353 5.0804971341023e-10 IN ENSMUST00000226988 Novel NA Neuronal N6 15 0.019917971322831 0.00705938750067851 0.00971072644011721 TRUE TRUE TRUE 15.5 1 FALSE FALSE FALSE chr15_-_73275620_73275641 ENSMUST00000226988.1 2139 chr15:73274584-73276856 2139 21 AAAGCTATGGAATAGATGAAG 1 78.036247039 4.70623997211 1.99573690907e-12 chr15_-_73275620_73275641|78.036247039|4.70623997211 1.25466304012889e-12 IN ENSMUST00000226988 Annotated NA Neuronal N2 8 0.0615821403391963 0.00272650638946939 -0.0035670524927143 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE TRUE FALSE chr15_-_73282217_73282235 ENSMUST00000226988.1 1078 chr15:73276913-73292034 1078 18 ATGAAATTAGTGGGGACG 1 74.7932566433 4.75804546204 8.58278781379e-10 chr15_-_73282217_73282235|74.7932566433|4.75804546204 7.50751127931437e-10 IN ENSMUST00000226988 Annotated NA Neuronal N1 18 0.0705806505785058 0.0334268764540135 0.00572367509578304 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr15_-_75905885_75905900 ENSMUST00000145764.1 1377 chr15:75901252-75909244,chr15:75901255-75909244,chr15:75901255-75909459,chr15:75903808-75909244 7,417,44,909 15 GAGGCCAAAGCAAAA 1 80.7365120626 1.34057895864 1.9706930976e-08 chr15_-_75905885_75905900|80.7365120626|1.34057895864 7.96435017935693e-09 IN ENSMUST00000145764 Annotated NA Neuronal N3 17 0.0522644478669723 0.0201434008586648 0.0394400487816385 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr15_-_76089901_76089925 ENSMUST00000227605.1 0 chr15:76089831-76090051 0 24 TGTGGTACCGCATCTTCTCCAATG 1 76.7742612207 1.67382144955 6.8212102633e-13 chr15_-_76089901_76089925|76.7742612207|1.67382144955 5.03486141667508e-13 IN ENSMUST00000227605 Annotated NA Included I1 1 6.87178904891082e-24 -3.24263758185965e-23 -1.68152377635109e-23 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_76194558_76194573 ENSMUST00000071869.11 44 chr15:76194430-76194750 44 15 CACTGGAGGGCAGAG 1 78.848039071 2.55557892354 1.09503162093e-09 chr15_-_76194558_76194573|78.848039071|2.55557892354 6.09172601251373e-10 IN ENSMUST00000071869 Annotated NA Neuro-Muscular NM4 16 0.0411758470210552 -0.0314055071160805 0.0598185909042156 TRUE TRUE TRUE 12.5 1 14.5 1 TRUE TRUE FALSE chr15_-_76504348_76504369 ENSMUST00000160293.1 0 chr15:76504220-76504543 0 21 ATTGAGAAGCGCCTGGCAGTG 1 82.6246743138 1.93415997088 6.77573552821e-11 chr15_-_76504348_76504369|82.6246743138|1.93415997088 1.97970528859059e-11 IN ENSMUST00000160293 Annotated Alt5 Excluded E2 3 -0.000502652931437626 -0.000896518704178712 0.00112544849222 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_76504543_76504571 ENSMUST00000160293.1 0 chr15:76504369-76504665 0 28 GTATGGCATCCTGGTGGATCCTATCCAG 1 75.2894745356 3.93309369613 0 chr15_-_76504543_76504571|75.2894745356|3.93309369613 0 IN ENSMUST00000160293 Annotated Alt3 Excluded E1 6 3.98939775023774e-05 2.75861806982195e-05 -0.00105489297854453 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_76603723_76603751 ENSMUST00000071898.5 0 chr15:76603645-76607334 0 28 GCTCTGACCAAGAATGATGGGAGCACAG 1 91.7572656198 1.11262499576 0 chr15_-_76603723_76603751|91.7572656198|1.11262499576 0 IN ENSMUST00000071898 Annotated NA Included I1 1 4.74509458436475e-119 8.86940281739391e-120 9.30997411588426e-119 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_76624591_76624620 ENSMUST00000078803.3 0 chr15:76624485-76625133 0 29 CCCCTGGGAACAAGCCGGAGCTGTATGAG 1 83.4301479577 3.95172726476 0 chr15_-_76624591_76624620|83.4301479577|3.95172726476 0 IN ENSMUST00000078803 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_77089686_77089700 ENSMUST00000171751.8 1 chr15:77086155-77094450 1 14 TCAGCTGAAGAAAT 1 74.6304977271 3.22794437408 1.20446195129e-07 chr15_-_77089686_77089700|74.6304977271|3.22794437408 1.06384259623837e-07 IN ENSMUST00000171751 Novel NA Excluded E1 6 0.000891568779520396 6.65312301093701e-05 0.00145917698298392 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_77089861_77089889 ENSMUST00000171751.8 74 chr15:77086155-77091811,chr15:77086155-77094450,chr15:77086155-77097939 2,70,2 28 AATCTGCAAACTGCTTCAGATCAAACAG 1 68.3552679803 2.62171875511 0 chr15_-_77089861_77089889|68.3552679803|2.62171875511 0 IN ENSMUST00000171751 Novel NA Excluded E2 3 0.00684734182085032 0.00257079604397937 0.0111046117794027 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_77105661_77105669 ENSMUST00000227533.1 3 chr15:77102939-77113604 3 8 GGATTCGG 1 74.2638931083 5.57741675774 0.000634766750006 chr15_-_77105661_77105669|74.2638931083|5.57741675774 0.000571878698927941 IN ENSMUST00000227533 Novel Alt3 Excluded E1 6 2.80111064768707e-05 0.000153880593490898 0.000214605778802292 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_77110164_77110171 ENSMUST00000171751.8 17 chr15:77102939-77113604,chr15:77105669-77113604 15,2 7 TTACATG 1 81.0258113751 3.60454548489 0.00188744557612 chr15_-_77110164_77110171|81.0258113751|3.60454548489 0.000725062465716464 IN ENSMUST00000171751 Novel NA Excluded E1 6 8.73432819140173e-05 9.23192922818509e-06 0.000201328558955106 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_77398314_77398343 ENSMUST00000176074.7 2 chr15:77396506-77398937 2 29 ATTCTCTTCCTATCATCTTTTGACTTCAT 1 80.19862043 0.107333330042 0 chr15_-_77398314_77398343|80.19862043|0.107333330042 0 IN ENSMUST00000176074 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_77782907_77782913 ENSMUST00000016771.12 298 chr15:77781515-77783388 298 6 AATCAG 1 78.8108192764 4.0158000052 0.00177511870847 chr15_-_77782907_77782913|78.8108192764|4.0158000052 0.000993329078072591 IN ENSMUST00000016771 Missing in GENCODE NA Excluded E2 3 0.00593210257412794 -0.00111780062851833 0.0210085337609892 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_77795495_77795507 ENSMUST00000016771.12 45 chr15:77792346-77795960,chr15:77794740-77795960 29,16 12 TGCCCTGGCTAG 1 75.7934954646 2.23481251579 2.80328055657e-07 chr15_-_77795495_77795507|75.7934954646|2.23481251579 2.27892714588229e-07 IN ENSMUST00000016771 Missing in GENCODE NA Excluded E2 3 -0.000803853053346642 -0.00875318987849589 0.0025602833229094 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_77797000_77797028 ENSMUST00000016771.12 0 chr15:77796054-77807867 0 28 ACCGGGAAGATCAGTCCATCCTGTGCAC 1 85.7700576972 4.79271876719 0 chr15_-_77797000_77797028|85.7700576972|4.79271876719 0 IN ENSMUST00000016771 Annotated NA Included I1 1 5.78530248172732e-62 2.65950598713733e-62 7.86455423955899e-62 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_78763300_78763327 ENSMUST00000018313.5 3 chr15:78760891-78764314 3 27 GATGTGTGTACACACATGCCGCTCCAG 1 79.5847700329 -0.0850967760648 0 chr15_-_78763300_78763327|79.5847700329|-0.0850967760648 0 IN ENSMUST00000018313 Novel NA Excluded E1 6 -0.000863289240655508 -0.00128374311360272 -0.000851194972677892 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_78787845_78787874 ENSMUST00000164826.7 0 chr15:78787479-78788721 0 29 GTCTTTTAGCAGCATGTCGGATATCACAG 1 86.9204531852 2.30090906753 0 chr15_-_78787845_78787874|86.9204531852|2.30090906753 0 IN ENSMUST00000164826 Annotated NA Included I1 1 4.4920625245905e-12 8.95373508674999e-12 -8.54971811773095e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_79303573_79303602 ENSMUST00000174021.7 29 chr15:79302697-79304304,chr15:79302697-79305702 27,2 29 GCAGGCAGTCACTCAAACCAGGCTGGATG 1 81.0289533058 1.03163637337 0 chr15_-_79303573_79303602|81.0289533058|1.03163637337 0 IN ENSMUST00000174021 Annotated Alt3 Neuronal N6 15 0.00966974154378296 0.00398330502773776 -0.00587980931057179 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_79363657_79363678 ENSMUST00000074991.8 683 chr15:79362885-79365284 683 21 TGCTGACGTACGGCCCATACG 1 72.1014851906 2.17424001813 2.10853556837e-12 chr15_-_79363657_79363678|72.1014851906|2.17424001813 2.03936867393395e-12 IN ENSMUST00000074991 Annotated NA Neuro-Muscular NM2 9 0.0563650449582631 -0.0396805837313886 0.0279447260832128 TRUE TRUE TRUE 12.5 1 12.5 1 TRUE TRUE FALSE chr15_-_81871165_81871189 ENSMUST00000023117.8 0 chr15:81870498-81871812,chr15:81870498-81871592 0 24 CTATCGGAAGACTGTGTGAAAAAT 1 81.8127096483 4.36817856559 3.7871927816e-12 chr15_-_81871165_81871189|81.8127096483|4.36817856559 1.26865185023917e-12 IN ENSMUST00000023117 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_81954440_81954450 ENSMUST00000071462.6 1 chr15:81952800-81955648 1 10 TGTCTTCTTG 1 75.724718256 0.111928573677 1.05574169956e-05 chr15_-_81954440_81954450|75.724718256|0.111928573677 8.63278319240823e-06 IN ENSMUST00000071462 Novel NA Excluded E1 6 -0.000159462770106592 -3.09870496716927e-05 0.000284481126328878 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_82003757_82003779 ENSMUST00000089187.6 246 chr15:81999614-82015877 246 22 GGAAACAACTGGAAGGCATCTG 1 91.0184975819 4.27215387729 3.60533825017e-12 chr15_-_82003757_82003779|91.0184975819|4.27215387729 5.72430991496731e-13 IN ENSMUST00000089187 Annotated NA Included I1 1 -0.000366250863353228 -0.000594333677651218 0.000664003350004455 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_83383622_83383628 ENSMUST00000165095.7 2852 chr15:83381883-83384986 2852 6 GATGAA 1 78.7000921138 2.50519998074 0.00294536992908 chr15_-_83383622_83383628|78.7000921138|2.50519998074 0.00167701398083919 IN ENSMUST00000165095 Missing in GENCODE NA Neuronal N4 13 0.0384678144332809 0.0124538377074851 0.0418009165858864 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr15_-_83981387_83981414 ENSMUST00000156187.7 35 chr15:83973361-83983443,chr15:83973364-83983443 18,17 27 TGTTCGAAATGATTTTGAGGAACTTGG 1 79.4560199272 0.282419346003 0 chr15_-_83981387_83981414|79.4560199272|0.282419346003 0 IN ENSMUST00000156187 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_84793895_84793918 ENSMUST00000162044.7 60 chr15:84791941-84795079 60 23 CCAATGAGGACCCCTGCTGGAAG 1 78.1298144262 3.68188887503 0 chr15_-_84793895_84793918|78.1298144262|3.68188887503 0 IN ENSMUST00000162044 Annotated NA Neuro-Muscular NM5 7 0.0195831470003881 -0.0591616999693637 -0.050124255088941 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_85936637_85936658 ENSMUST00000016172.8 65 chr15:85932469-85937843 65 21 GCTTTTCCAAAGATTGTATAT 1 88.076959901 0.101719995923 4.75086636698e-12 chr15_-_85936637_85936658|88.076959901|0.101719995923 7.60280727263307e-13 IN ENSMUST00000016172 Missing in GENCODE NA Neuronal N6 15 0.0103386409060626 -0.000942808776468445 0.0128920072659409 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_89135426_89135456 ENSMUST00000088827.6 0 chr15:89135170-89135576 0 30 TATATCCATGCGGCTGGTGTCATCCACAGA 1 81.9337602975 2.98826473173 0 chr15_-_89135426_89135456|81.9337602975|2.98826473173 0 IN ENSMUST00000088827 Annotated NA Included I1 1 1.47916986398649e-18 -2.74114210553566e-19 -1.26630193106155e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_89146138_89146168 ENSMUST00000088823.3 0 chr15:89146050-89146271 0 30 TATATCCACTCGGCGGGCATCATCCACCGG 1 81.2105292796 3.63482354143 0 chr15_-_89146138_89146168|81.2105292796|3.63482354143 0 IN ENSMUST00000088823 Annotated NA Included I1 1 8.3345265948358e-17 -7.85171993897066e-16 -3.10263836336235e-16 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_89307171_89307195 ENSMUST00000123791.7 365 chr15:89306935-89307492 365 24 CTGGACTCTGTTGAGGAAGGAGCG 1 78.9926369372 1.78325000299 0 chr15_-_89307171_89307195|78.9926369372|1.78325000299 0 IN ENSMUST00000123791 Annotated NA Neuronal N4 13 0.0256099077832558 0.0141291211550456 -0.00653314277127502 TRUE TRUE TRUE 12.5 1 FALSE FALSE FALSE chr15_-_89354426_89354455 ENSMUST00000023283.5 0 chr15:89354297-89354563 0 29 GTGGGCCAAGTGTTCCTTTATTTCCAGTG 1 88.1652447013 4.06957576808 0 chr15_-_89354426_89354455|88.1652447013|4.06957576808 0 IN ENSMUST00000023283 Annotated NA Included I1 1 7.47396043478776e-119 1.39701252649048e-119 1.46640655847606e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_89588187_89588217 ENSMUST00000023294.14 0 chr15:89586338-89590272,chr15:89586993-89590272,chr15:89584007-89590272,chr15:89584390-89590272 0 30 ACTCATGGAGAGATTTCTCATGGATGGATT 1 71.0288783829 3.62329413353 0 chr15_-_89588187_89588217|71.0288783829|3.62329413353 0 IN ENSMUST00000023294 Annotated Alt3 Included I2 10 -0.000456647560319345 -0.00127537435825166 -0.00220581284681499 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_90948323_90948335 ENSMUST00000109287.2 243 chr15:90943901-90949005,chr15:90943901-90956294 242,1 12 ATCCACCAGAAG 1 75.8981804527 1.86506248522 1.18464161336e-06 chr15_-_90948323_90948335|75.8981804527|1.86506248522 9.54332868063901e-07 IN ENSMUST00000109287 Novel NA Excluded E3 2 0.00754400017758825 -0.0316934255049461 0.0358911759394878 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_90948323_90948338 ENSMUST00000088614.11 78 chr15:90943901-90949005,chr15:90943901-90956294 76,2 15 CAGATCCACCAGAAG 1 77.4959040099 1.74152630764 1.8499122012e-08 chr15_-_90948323_90948338|77.4959040099|1.74152630764 1.25175855236748e-08 IN ENSMUST00000088614 Annotated NA Excluded E3 2 0.00432079189473308 -0.0154872260563526 0.0285774906548645 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_90964974_90964995 ENSMUST00000109288.8 468 chr15:90959748-90965466 468 21 ATCTAGATGGCGCCCCACCAG 1 89.1964194558 3.50692005321 5.05639974335e-12 chr15_-_90964974_90964995|89.1964194558|3.50692005321 7.84150522292748e-13 IN ENSMUST00000109288 Annotated NA Neuro-Muscular NM1 12 0.0604857306881935 -0.0868340576067851 -0.0106731311519022 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE TRUE FALSE chr15_-_93395586_93395615 ENSMUST00000162160.7 0 chr15:93393764-93397169,chr15:93391565-93397169 0 29 ATATTTTCCAAGTATGGCAAAGTTGTAAA 1 88.2062279074 4.29636366349 0 chr15_-_93395586_93395615|88.2062279074|4.29636366349 0 IN ENSMUST00000162160 Annotated Alt3 Included I1 1 -0.00136426145012054 -0.001387444998129 0.00207093934529449 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_94583623_94583644 ENSMUST00000023087.12 23 chr15:94582875-94584380 23 21 AACCCAGAGGATCACACTGGG 1 77.8175893775 1.76167998657 1.31450406116e-12 chr15_-_94583623_94583644|77.8175893775|1.76167998657 8.52096171399808e-13 IN ENSMUST00000023087 Novel NA Excluded E1 6 0.000330605204322906 8.2389986366975e-05 0.0006003728338164 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_97999274_97999291 ENSMUST00000088355.11 0 chr15:97998886-98004408,chr15:97998886-98000399,chr15:97998886-97999645,chr15:97998886-98000402 0 17 GAAAATTAGGGCCAAAG 1 89.4852353943 1.55628571074 4.2957252866e-08 chr15_-_97999274_97999291|89.4852353943|1.55628571074 6.64560440011286e-09 IN ENSMUST00000088355 Annotated NA Included I1 1 7.66104380390032e-21 6.3855114782277e-20 4.18963135751866e-19 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_97999650_97999666 MULTI(2) 0 chr15:97998886-98000399,chr15:97999291-98000402,chr15:97999291-98004408,chr15:97999291-98000399,chr15:97998886-98004408,chr15:97998886-98000402 0 16 GAGACTCCACGCTAAT 1 76.5503554991 1.29839998707 2.5331970821e-07 chr15_-_97999650_97999666|76.5503554991|1.29839998707 1.91588547582278e-07 IN MULTI(2) Missing in GENCODE NA FALSE FALSE FALSE FALSE FALSE FALSE chr15_-_98598097_98598123 ENSMUST00000096224.5 0 chr15:98597874-98598356 0 26 GGCATTGATGATTCTAGCAAAGACAA 1 88.7652498872 3.15176669881 1.00364161426e-13 chr15_-_98598097_98598123|88.7652498872|3.15176669881 1.56541446472147e-14 IN ENSMUST00000096224 Annotated NA Included I1 1 3.28949835967271e-62 1.21794831560727e-62 4.08824972968941e-62 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_99739306_99739321 ENSMUST00000176248.7 1 chr15:99738730-99739405 1 15 CATCACTGAGCCTCT 1 69.0061310117 -0.252315790147 2.38651409745e-09 chr15_-_99739306_99739321|69.0061310117|-0.252315790147 2.37506070366322e-09 IN ENSMUST00000176248 Novel NA Excluded E2 3 0.0024609702508715 -0.00590831242060784 -0.00535097604097152 TRUE FALSE FALSE FALSE FALSE FALSE chr15_-_99739601_99739615 ENSMUST00000176970.7 4 chr15:99739512-99740943 4 14 ACCCCTTACTGGAA 1 76.20674567 3.82111108386 2.05618559956e-08 chr15_-_99739601_99739615|76.20674567|3.82111108386 1.60994304554407e-08 IN ENSMUST00000176970 Novel Alt5 Excluded E1 6 0.000535413638184005 0.000396674314756082 0.00212737104641934 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_10572917_10572923 ENSMUST00000155633.7 1762 chr16:10571599+10573299 1762 6 TGTCAT 1 83.9021280987 4.85060002804 0.00161041225559 chr16_+_10572917_10572923|83.9021280987|4.85060002804 0.000386098750434716 IN ENSMUST00000155633 Annotated NA Neuronal N1 18 0.0737738952538497 0.0102410162010455 0.0230530841163305 TRUE TRUE TRUE 11.5 1 12.5 1 TRUE FALSE FALSE chr16_+_13820067_13820097 ENSMUST00000124604.7 2 chr16:13819436+13826882,chr16:13819436+13827059 1,1 30 ATGGCATTGTGCTAACCGAATATTTGTTGG 1 78.7311316271 0.10047058768 0 chr16_+_13820067_13820097|78.7311316271|0.10047058768 0 IN ENSMUST00000124604 Novel NA Excluded E1 6 1.56561623977125e-05 -0.000100909279003164 -0.000287375533261588 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_13826882_13826904 ENSMUST00000124604.7 114 chr16:13819436+13827059 114 22 GAAAGAGCCAGACTTCTCAGAG 1 81.6976666469 2.32049997953 1.68687286362e-12 chr16_+_13826882_13826904|81.6976666469|2.32049997953 5.76427794385381e-13 IN ENSMUST00000124604 Novel Alt3 Excluded E2 3 -0.00264505746661557 0.00090420868995776 -0.00253783419021011 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_13827110_13827125 ENSMUST00000145248.7 7 chr16:13819436+13827387 7 15 TCCTGAGACATACAG 1 77.9640862128 3.20442104967 2.88564474538e-08 chr16_+_13827110_13827125|77.9640862128|3.20442104967 1.83273182186028e-08 IN ENSMUST00000145248 Novel Alt5 Excluded E2 3 -0.000569181150429492 7.93757715182258e-05 0.000222069088221531 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_13946557_13946587 ENSMUST00000128757.7 0 chr16:13944736+13946751 0 30 AGTGGTCTCATGTACTGGCCCTTTGTGCAG 1 90.9158496697 3.19067647856 0 chr16_+_13946557_13946587|90.9158496697|3.19067647856 0 IN ENSMUST00000128757 Annotated Alt5 Included I3 5 0.00816932119414095 -0.00914119193026897 0.00155739586961946 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_14097927_14097930 ENSMUST00000056521.11 1 chr16:14095986+14099792 1 3 AAG 1 74.8501566632 None 0.206958428045 chr16_+_14097927_14097930|74.8501566632|None 0.180391770262079 RESCUED ENSMUST00000056521 Novel NA Excluded E1 6 -0.000278578750786238 0.000578181483708229 0.000668670247818718 TRUE TRUE TRUE 15.5 -1 14.5 -1 FALSE FALSE FALSE chr16_+_17506898_17506919 ENSMUST00000023448.12 810 chr16:17506334+17507126 810 21 GTTGTTTATGCTACACAGCAA 1 75.8953147357 2.0071200031 6.8123284791e-13 chr16_+_17506898_17506919|75.8953147357|2.0071200031 5.48894263374677e-13 IN ENSMUST00000023448 Annotated NA Neuro-Muscular NM4 16 0.0270172895188469 -0.0573611696551249 -0.0287041909331882 TRUE TRUE TRUE FALSE FALSE FALSE chr16_+_18252125_18252146 ENSMUST00000128045.2 0 chr16:18251660+18252401,chr16:18251660+18253411 0 21 GTAAACACACCTGCAGCTGAG 1 73.7125705851 2.99680002272 1.62799551617e-10 chr16_+_18252125_18252146|73.7125705851|2.99680002272 1.50365275786157e-10 IN ENSMUST00000128045 Annotated Alt3 Excluded E3 2 -0.000621203938408008 2.36782228232821e-05 -0.00205121434344094 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_18400780_18400798 ENSMUST00000115614.8 682 chr16:18400253+18401566 682 18 AGGAGTGGTTCCATCAAG 1 80.0211531348 4.0051364411 7.33848537493e-11 chr16_+_18400780_18400798|80.0211531348|4.0051364411 3.35927952122006e-11 IN ENSMUST00000115614 Annotated NA Neuronal N3 17 0.0522654147195556 0.0290224841898592 0.0418704885779595 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr16_+_18453720_18453740 ENSMUST00000205679.1 0 chr16:18452137+18456023,chr16:18443274+18454475,chr16:18452137+18454488,chr16:18451977+18454475,chr16:18443274+18454488 0 20 GTTGGTGGTTGGAGCCAGCT 1 74.3587034571 4.55724997881 2.1045707399e-09 chr16_+_18453720_18453740|74.3587034571|4.55724997881 1.88687199198512e-09 IN ENSMUST00000205679 Annotated NA Included I1 1 0.000497803618346334 -0.000260512876756436 -0.00143389356926817 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_18895902_18895927 ENSMUST00000190050.1 57 chr16:18894836+18896453 57 25 GTGACTGCAAAGGGCAGATAAGAAG 1 81.4343659479 0.464206895727 0 chr16_+_18895902_18895927|81.4343659479|0.464206895727 0 IN ENSMUST00000190050 Annotated Alt3 Excluded E2 3 0.00532647716077794 0.00213675968499778 0.0038777731185584 TRUE FALSE TRUE FALSE FALSE FALSE chr16_+_20538733_20538739 ENSMUST00000090023.12 799 chr16:20537734+20539307 799 6 CAATAG 1 77.4868580116 4.76370004416 0.00148948328435 chr16_+_20538733_20538739|77.4868580116|4.76370004416 0.00100905368348936 IN ENSMUST00000090023 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr16_+_20540807_20540813 ENSMUST00000090023.12 17038 chr16:20540415+20540974 17038 6 CATCAG 1 83.6813297811 2.80270000696 0.000523430411844 chr16_+_20540807_20540813|83.6813297811|2.80270000696 0.000129610058550389 IN ENSMUST00000090023 Annotated NA Neuro-Muscular NM5 7 0.0327668317619294 0.00200172840552134 -0.0469176682200616 TRUE TRUE TRUE FALSE FALSE FALSE chr16_+_20551961_20551984 ENSMUST00000003319.5 0 chr16:20551862+20552098 0 23 GCCAGACCTTCTGCTGTTAGACG 1 89.151569258 3.09059267388 2.97006863548e-12 chr16_+_20551961_20551984|89.151569258|3.09059267388 4.60853577521902e-13 IN ENSMUST00000003319 Annotated NA Included I1 1 -7.14319436070078e-119 -1.33518662402961e-119 -1.40150956783842e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_20637974_20638004 ENSMUST00000079600.10 2 chr16:20637849+20638659 2 30 GTGTGTGCCACTATCCTGGAAAGAAATGTG 1 78.5395774338 0.232617647058 0 chr16_+_20637974_20638004|78.5395774338|0.232617647058 0 IN ENSMUST00000079600 Novel NA Excluded E2 3 4.82663911502121e-05 -0.000534740506952608 -0.00219110864355955 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_20673942_20673961 ENSMUST00000140576.7 2 chr16:20672876+20674227 2 19 GTCCCCTGGACTCCCACAG 1 77.9474788647 3.32126084618 1.88720150618e-11 chr16_+_20673942_20673961|77.9474788647|3.32126084618 1.20140564163762e-11 IN ENSMUST00000140576 Novel Alt5 Excluded E2 3 0.000807889608223265 0.000710103067887951 -0.000115895476243867 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_20674785_20674806 ENSMUST00000136713.4 588 chr16:20673655+20675343,chr16:20674314+20675343 1,587 21 GGAGGATTCAGGTCTCTGCAG 1 79.8803532069 4.55372001052 8.91731133379e-13 chr16_+_20674785_20674806|79.8803532069|4.55372001052 4.18221013376296e-13 IN ENSMUST00000136713 Annotated NA Neuronal N1 18 0.0721710721946314 0.0316923676431633 0.0320540915966036 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE TRUE chr16_+_21451355_21451361 ENSMUST00000096191.10 427 chr16:21448403+21456228 427 6 GAAAAG 1 69.3764990419 3.65989999771 0.0074252638377 chr16_+_21451355_21451361|69.3764990419|3.65989999771 0.0073795621879793 IN ENSMUST00000096191 Annotated NA Neuronal N1 18 0.0701238698007121 0.0238896361420192 0.0133825100509401 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_27436684_27436708 ENSMUST00000100026.9 30 chr16:27436602+27438300 30 24 GATAAGCTCTGGAAATCTATTTCG 1 82.0773223624 0.455535712519 0 chr16_+_27436684_27436708|82.0773223624|0.455535712519 0 IN ENSMUST00000100026 Missing in GENCODE NA Excluded E2 3 -0.000718008371479368 -0.0047760099054285 0.00136764354211336 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_31778886_31778898 ENSMUST00000115205.7 56 chr16:31771855+31781781 56 12 GTTTCCCTTCAG 1 80.9841031081 0.0940625006333 2.30734901696e-06 chr16_+_31778886_31778898|80.9841031081|0.0940625006333 8.92873122326776e-07 IN ENSMUST00000115205 Novel NA Excluded E1 6 0.00044329077238166 -4.4936055032613e-06 0.00106270741557692 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_31854667_31854688 ENSMUST00000115201.7 0 chr16:31853884+31856440 0 21 ATGAATATGGCTGCTCAAAAG 1 79.3475024741 3.41432006359 5.75482772547e-10 chr16_+_31854667_31854688|79.3475024741|3.41432006359 2.95253266280326e-10 IN ENSMUST00000115201 Annotated Alt5 Neuronal N6 15 0.0185349045720164 -0.00180093733611107 0.0118854359893677 TRUE TRUE TRUE FALSE FALSE FALSE chr16_+_32467077_32467107 ENSMUST00000115137.7 0 chr16:32466518+32470119 0 30 GCATGTTTGCTCCCACACAGAGGACAGAAG 1 81.805942413 4.75679414292 0 chr16_+_32467077_32467107|81.805942413|4.75679414292 0 IN ENSMUST00000115137 Annotated Alt3 Excluded E2 3 0.000847464232171212 0.000220211884136597 0.00304526697462543 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_34877917_34877936 ENSMUST00000023538.8 0 chr16:34875662+34879053 0 19 GTTTGGACAATGCCGCTAG 1 85.5365535499 1.21821740982 1.22527125113e-08 chr16_+_34877917_34877936|85.5365535499|1.21821740982 2.3853347075331e-09 IN ENSMUST00000023538 Annotated NA Included I1 1 -3.27525146774819e-06 -1.80723304126386e-05 3.01921498907728e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_35048719_35048738 ENSMUST00000061156.8 0 chr16:35025942+35075605 0 19 ATTTTACATTGTGCTATAG 1 92.3439089685 1.67747827069 1.80589251664e-07 chr16_+_35048719_35048738|92.3439089685|1.67747827069 3.08860336195593e-08 IN ENSMUST00000061156 Annotated NA Included I1 1 1.57718413020858e-26 4.34884697676017e-26 -1.81546465519402e-26 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_35278494_35278517 ENSMUST00000114913.1 0 chr16:35274565+35279195 0 23 GGCTTTGAGGACCCCAAGGACAA 1 84.5461548413 4.76581483196 6.54125642541e-11 chr16_+_35278494_35278517|84.5461548413|4.76581483196 1.43496325932801e-11 IN ENSMUST00000114913 Annotated NA Included I1 1 -1.96664297739321e-16 1.45597076416784e-16 5.13787508935343e-16 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_35293017_35293047 ENSMUST00000114913.1 0 chr16:35291677+35293961 0 30 AGACTTCAGCAACAACGGGACCTCCCAGTG 1 85.5747055657 1.93635294214 0 chr16_+_35293017_35293047|85.5747055657|1.93635294214 0 IN ENSMUST00000114913 Annotated NA Included I1 1 3.51175764889166e-22 -2.91519467225764e-22 -8.51617845261175e-22 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_36256324_36256335 ENSMUST00000187183.6 27 chr16:36255642+36257246 27 11 GAGGCAGCCAG 1 81.1647468607 -0.344266662002 1.47987047672e-06 chr16_+_36256324_36256335|81.1647468607|-0.344266662002 5.54823147425054e-07 IN ENSMUST00000187183 Novel NA Excluded E1 6 0.000154547990925382 -0.00111381934284486 0.00165985861644628 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_36885180_36885188 ENSMUST00000134616.7 1 chr16:36875263+36886130 1 8 ACCCCACT 1 68.4031565286 0.341999997695 0.000646799173494 chr16_+_36885180_36885188|68.4031565286|0.341999997695 0.000644750027376184 IN ENSMUST00000134616 Novel Alt5 Excluded E2 3 5.41911956828124e-05 0.00153929592838399 -0.00180405869535779 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_37017473_37017489 ENSMUST00000182946.7 23 chr16:37017355+37022733 23 16 GCGAGAATTGGCAGAG 1 79.8348815283 0.821300008893 4.8730726121e-09 chr16_+_37017473_37017489|79.8348815283|0.821300008893 2.30316643534678e-09 IN ENSMUST00000182946 Novel NA Excluded E2 3 0.00846036653214667 0.00530912330360192 0.0147174257415942 TRUE TRUE FALSE 15.5 1 FALSE FALSE FALSE chr16_+_44201737_44201766 ENSMUST00000119746.7 0 chr16:44200678+44204997 0 29 GAAGAAGAACCGAGAGACACACAATGCAG 1 88.8715231041 3.09321206283 0 chr16_+_44201737_44201766|88.8715231041|3.09321206283 0 IN ENSMUST00000119746 Annotated NA Included I1 1 -1.01367134347049e-12 -5.65830402609346e-12 1.59188789758108e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_45618817_45618846 ENSMUST00000161347.8 0 chr16:45616936+45619823 0 29 ATGAAGGGATGACTTCAGCTCCCGTTCAG 1 88.6778627814 0.697484853141 0 chr16_+_45618817_45618846|88.6778627814|0.697484853141 0 IN ENSMUST00000161347 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr16_+_4731473_4731484 ENSMUST00000004172.14 106 chr16:4726471+4762558 106 11 GTACTCATTTT 1 81.1380922397 -0.00426666935285 3.35941036327e-05 chr16_+_4731473_4731484|81.1380922397|-0.00426666935285 1.26537893129219e-05 IN ENSMUST00000004172 Novel NA Excluded E1 6 2.7712949154818e-05 1.01468083146775e-05 8.87013490987924e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_49908053_49908078 ENSMUST00000084838.12 341 chr16:49906812+49910868 341 25 AAAGCTGTAGAGGAACCCCTTAACG 1 80.0777424144 3.22762067154 0 chr16_+_49908053_49908078|80.0777424144|3.22762067154 0 IN ENSMUST00000084838 Missing in GENCODE NA Neuronal N2 8 0.0481729266665136 0.0439136798478779 -0.00528891983223876 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr16_+_49908057_49908078 ENSMUST00000084838.12 3 chr16:49906812+49910868 3 21 CTGTAGAGGAACCCCTTAACG 1 77.2046021482 3.11763998508 3.58024720981e-12 chr16_+_49908057_49908078|77.2046021482|3.11763998508 2.51321186084397e-12 IN ENSMUST00000084838 Novel NA Excluded E2 3 0.00183400233293824 0.00357744764136978 -0.00265585423700491 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_56243608_56243629 ENSMUST00000160116.7 0 chr16:56236763+56252102 0 21 GGCCCCGGAGGAAAATGACAG 1 86.8999788455 1.49944001317 3.48200046574e-09 chr16_+_56243608_56243629|86.8999788455|1.49944001317 5.97584870476453e-10 IN ENSMUST00000160116 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr16_+_56686441_56686471 ENSMUST00000048471.13 0 chr16:56685780+56686959 0 30 CTGACCCAAGAGTGAGTGAGCCAATTTCTG 1 87.2507702305 3.36685289273 0 chr16_+_56686441_56686471|87.2507702305|3.36685289273 0 IN ENSMUST00000048471 Annotated NA Included I1 1 2.11676629240775e-11 1.04717513718902e-10 -1.51101261522165e-11 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_58729215_58729223 ENSMUST00000023426.11 42 chr16:58728084+58729437 42 8 CATCTTGG 1 78.6294504629 1.56158333893 7.99266367221e-05 chr16_+_58729215_58729223|78.6294504629|1.56158333893 4.60091042677746e-05 IN ENSMUST00000023426 Novel Alt5 Excluded E1 6 0.000519742633337131 0.000340690239834231 -0.000112544255316859 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_62888980_62889005 ENSMUST00000023629.8 0 chr16:62885558+62898875 0 25 GATTATTTTTATCCAAAATATTTAG 1 91.8503841597 2.95903449454 1.1802114841e-11 chr16_+_62888980_62889005|91.8503841597|2.95903449454 1.95254923340826e-12 IN ENSMUST00000023629 Annotated NA Included I1 1 2.29380995064803e-108 8.36801230999654e-109 2.93092762534536e-108 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_72956274_72956283 ENSMUST00000023600.7 838 chr16:72935786+72960080 838 9 TTGGGTCTG 1 86.4274808038 5.06799994065 0.000361749650455 chr16_+_72956274_72956283|86.4274808038|5.06799994065 6.45129235440356e-05 IN ENSMUST00000023600 Missing in GENCODE NA Non-Neuronal NN1 23 -0.0725650862502281 -0.0339421450959099 0.0110449075365237 TRUE TRUE TRUE 10.5 -1 12.5 -1 TRUE FALSE FALSE chr16_+_72993666_72993693 ENSMUST00000023600.7 0 chr16:72989796+72995116 0 27 TCCCGTCCTTTACCTTCACGCCAACAG 1 82.961344274 5.50645163751 0 chr16_+_72993666_72993693|82.961344274|5.50645163751 0 IN ENSMUST00000023600 Annotated NA Included I1 1 3.39320030062247e-21 -6.75276468427826e-20 -1.68990260056072e-20 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_84818759_84818775 ENSMUST00000114195.7 0 chr16:84816373+84821259 0 16 AAGAAACTTCCTTCCA 1 84.6625789112 1.47509999052 1.13295327031e-06 chr16_+_84818759_84818775|84.6625789112|1.47509999052 2.44798784687639e-07 IN ENSMUST00000114195 Annotated NA Included I1 1 1.11557323614095e-30 -1.79055395794286e-30 -2.20177442583823e-30 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_8581898_8581928 ENSMUST00000065987.13 0 chr16:8578328+8582736 0 30 GAACTAATGAAACAGCTGAACACAATCCAG 1 87.1644534527 3.17955880612 0 chr16_+_8581898_8581928|87.1644534527|3.17955880612 0 IN ENSMUST00000065987 Annotated NA Included I1 1 -6.7657550871105e-69 5.80192510807296e-69 1.85311002883028e-68 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_8588109_8588112 ENSMUST00000138987.7 68 chr16:8582782+8588885 68 3 GTA 1 61.6238367994 None 0.310702053116 chr16_+_8588109_8588112|61.6238367994|None 0.310698074273591 RESCUED ENSMUST00000138987 Novel NA Included I2 10 -0.00350471823993318 0.0305034107217098 -0.00361295641298549 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_91674127_91674141 ENSMUST00000140312.7 11 chr16:91671465+91674694,chr16:91674022+91674694 9,2 14 GAACTGAACCAGGG 1 69.7376484403 1.93705554472 9.51695255935e-09 chr16_+_91674127_91674141|69.7376484403|1.93705554472 9.44264433311304e-09 IN ENSMUST00000140312 Novel Alt5 Excluded E1 6 0.00056512362277257 4.16566516387811e-05 0.000269477766944105 TRUE FALSE FALSE FALSE FALSE FALSE chr16_+_91842627_91842642 ENSMUST00000114001.7 562 chr16:91841610+91848721,chr16:91841610+91850805 554,8 15 GTTAAAGGGGAATGG 1 82.0326102715 4.7404210442 2.58005453668e-08 chr16_+_91842627_91842642|82.0326102715|4.7404210442 8.32356916724564e-09 IN ENSMUST00000114001 Annotated NA Neuronal N6 15 0.0237628801541687 0.00482820874683701 0.0467619483525311 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr16_+_96391019_96391044 ENSMUST00000113795.7 0 chr16:96386626+96396368,chr16:96386447+96396368 0 25 AATCTACTTATCAAAATGAAATAAG 1 91.5516245284 1.05817241581 8.62687699055e-12 chr16_+_96391019_96391044|91.5516245284|1.05817241581 1.40321088082374e-12 IN ENSMUST00000113795 Annotated NA Included I1 1 2.70503371337716e-05 0.000160650933470451 -5.46952267049724e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_11128486_11128502 ENSMUST00000155221.7 1 chr16:11122767-11134267 1 16 CCGGCTTTCTGATCAG 1 67.6787170758 2.87975000245 1.04409991764e-08 chr16_-_11128486_11128502|67.6787170758|2.87975000245 1.04212454221653e-08 IN ENSMUST00000155221 Novel Alt5 Excluded E2 3 -0.00127202871547123 0.000337782548840314 -0.00311599357872545 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_13652461_13652483 ENSMUST00000058884.8 2 chr16:13651836-13652644 2 22 ACCAACAGATGCACCTGCCTCT 1 62.7845212473 0.0112692408192 1.73638881051e-13 chr16_-_13652461_13652483|62.7845212473|0.0112692408192 1.73638881051374e-13 IN ENSMUST00000058884 Novel NA Excluded E1 6 -0.000486691465181989 0.000142930195412767 -0.000330829017090036 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_13838373_13838394 ENSMUST00000150435.7 0 chr16:13833785-13839231,chr16:13834351-13839305,chr16:13836303-13839231 0 21 CTTCTAGAGAACATGACAGAA 1 71.5949438117 3.94379999876 6.60065779812e-10 chr16_-_13838373_13838394|71.5949438117|3.94379999876 6.43838871106084e-10 IN ENSMUST00000150435 Annotated Alt3 Excluded E2 3 -0.000405775396014686 0.000574257733171859 -0.00319449981397657 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_13872454_13872463 ENSMUST00000115803.7 2 chr16:13869881-13875977 2 9 CATCAGATG 1 81.2374255876 5.03746162011 9.06396561956e-05 chr16_-_13872454_13872463|81.2374255876|5.03746162011 3.35526437218459e-05 IN ENSMUST00000115803 Novel Alt5 Excluded E1 6 9.41974838089613e-05 -0.000205887433393012 -0.000231509687605656 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_14248579_14248600 ENSMUST00000090287.3 1266 chr16:14246819-14250521 1266 21 CAAGGTCCATCTTTTGCCTAC 1 76.5223198097 3.6326000303 3.26583204924e-12 chr16_-_14248579_14248600|76.5223198097|3.6326000303 2.47724063484611e-12 IN ENSMUST00000090287 Missing in GENCODE NA Other O1 4 0.00912736407793565 0.0146722874907897 0.0168582894533485 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_14256484_14256512 ENSMUST00000090287.3 0 chr16:14250624-14269108 0 28 ATCGTGAAGACCAGTCCATTCTGTGCAC 1 87.6957504835 4.5969062848 0 chr16_-_14256484_14256512|87.6957504835|4.5969062848 0 IN ENSMUST00000090287 Annotated NA Included I1 1 -6.30882712956985e-07 -3.53108283604098e-08 -2.19683210246315e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_14304889_14304893 ENSMUST00000023357.13 1 chr16:14304587-14311046 1 4 GCTG 1 63.1102807667 0.237999994308 0.0937455833181 chr16_-_14304889_14304893|63.1102807667|0.237999994308 0.0937410035647859 IN ENSMUST00000023357 Novel NA Excluded E2 3 0.00880193665924441 -0.00178515272190504 0.0180445321377908 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_16318832_16318841 ENSMUST00000023477.13 11 chr16:16316778-16319451 11 9 TCTTCTAAA 1 70.15683724 3.14099998658 3.96363035319e-05 chr16_-_16318832_16318841|70.15683724|3.14099998658 3.92308071355263e-05 IN ENSMUST00000023477 Novel NA Neuronal N1 18 0.0555203795837273 0.00483845585107778 0.0102821111196147 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr16_-_17087191_17087213 ENSMUST00000164458.8 12 chr16:17087115-17088744 12 22 GCCACTCACAAGCTACTACAAG 1 74.5300940511 0.0338846091181 3.55937501695e-13 chr16_-_17087191_17087213|74.5300940511|0.0338846091181 3.16191517413245e-13 IN ENSMUST00000164458 Novel Alt3 Excluded E3 2 -0.00057276085809286 -8.33436648616258e-05 0.00105242296410789 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_17154259_17154282 ENSMUST00000115700.1 0 chr16:17153514-17159989 0 23 TAATCCAGTCCCTCATAGCACTG 1 82.0896483983 5.12822227566 9.16315912036e-11 chr16_-_17154259_17154282|82.0896483983|5.12822227566 2.92761370701555e-11 IN ENSMUST00000115700 Annotated Alt3 Excluded E3 2 -0.00363778193422762 -0.000567054706619462 -0.00180876619807904 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_17281848_17281877 ENSMUST00000155928.7 0 chr16:17281109-17303094 0 29 ATGTGTGTCCGAGGTTATCTGGCTGTGCG 1 72.2404552029 4.656181815 0 chr16_-_17281848_17281877|72.2404552029|4.656181815 0 IN ENSMUST00000155928 Annotated Alt5 Excluded E2 3 0.00194212766945559 -0.00154802752645948 0.00612781748742419 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_17318482_17318487 ENSMUST00000149309.1 4 chr16:17318404-17323036 4 5 AAAAA 1 71.557862124 4.27055567958 0.0174807859017 chr16_-_17318482_17318487|71.557862124|4.27055567958 0.017060220355984 IN ENSMUST00000149309 Novel Alt5 Excluded E2 3 -0.00186737832016943 0.00179759892954635 -0.0029266749927816 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_17683158_17683188 ENSMUST00000012259.7 0 chr16:17680761-17685452 0 30 ATAACAAGAAATCCCAAGCTTCTGTCAGTG 1 84.8147726539 2.59452937149 0 chr16_-_17683158_17683188|84.8147726539|2.59452937149 0 IN ENSMUST00000012259 Annotated NA Included I1 1 2.81978120800747e-110 -1.99018432922985e-111 1.97863145038437e-110 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_18623438_18623453 ENSMUST00000096987.5 3 chr16:18623417-18624110 3 15 ACTAGGCTGGGCTGG 1 70.3761854358 -0.419000008333 2.45199771598e-09 chr16_-_18623438_18623453|70.3761854358|-0.419000008333 2.42317699239436e-09 IN ENSMUST00000096987 Novel NA Excluded E1 6 -0.000131051807395758 0.000594669230701571 -0.000834641866881429 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_18629650_18629661 ENSMUST00000096987.5 0 chr16:18625441-18629807 0 11 AGGACAAACAG 1 71.1906360245 1.52846666909 0.00103682050184 chr16_-_18629650_18629661|71.1906360245|1.52846666909 0.00101673719024697 IN ENSMUST00000096987 Annotated NA Included I1 1 8.2295438262118e-22 -2.41581983133639e-20 -5.31635499578683e-21 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_20707572_20707593 ENSMUST00000144400.7 1 chr16:20707457-20707842 1 21 CGGGTCCGAATCTCCCTGGCG 1 66.6133954041 2.09204001039 3.19744231092e-13 chr16_-_20707572_20707593|66.6133954041|2.09204001039 3.1952218648712e-13 IN ENSMUST00000144400 Novel Alt5 Excluded E1 6 -0.000333226977687817 0.00197764889839508 -0.00186630747598994 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_22856754_22856774 ENSMUST00000004576.6 1 chr16:22842107-22857344 1 20 ACCCCCTGTTTGTATGGCAA 1 71.4166824022 -0.540166663084 5.40474331956e-11 chr16_-_22856754_22856774|71.4166824022|-0.540166663084 5.28502797081387e-11 IN ENSMUST00000004576 Novel NA Excluded E3 2 0.00811798863768317 0.00338763831935163 0.0213989852929559 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_23890432_23890462 ENSMUST00000004480.3 28 chr16:23889941-23890606 28 30 AATTGATCAGCGCAGGTGGTCACCTTGCAG 1 90.9254135687 0.263500002706 0 chr16_-_23890432_23890462|90.9254135687|0.263500002706 0 IN ENSMUST00000004480 Novel NA Excluded E1 6 -0.000171820866394785 0.000441904165523356 0.000340173120550306 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_29348717_29348746 ENSMUST00000152040.1 0 chr16:29348570-29348955 0 29 CTACGATGCATCCAAGTGCAGAAAATAAG 1 84.2050654621 2.36718182627 0 chr16_-_29348717_29348746|84.2050654621|2.36718182627 0 IN ENSMUST00000152040 Annotated Alt3 Excluded E3 2 0.00274616533568021 -0.00595717315678968 -0.00448243651599236 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_30343889_30343907 ENSMUST00000061350.12 0 chr16:30343796-30344521 0 18 GAGCTGTTTGAACTTCCA 1 82.5809289709 3.31881818311 1.02299964055e-08 chr16_-_30343889_30343907|82.5809289709|3.31881818311 3.01053071360968e-09 IN ENSMUST00000061350 Annotated NA Included I1 1 -1.63251361774872e-34 -5.25160143531957e-34 2.83654766701494e-35 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_31122620_31122641 ENSMUST00000058033.7 248 chr16:31119447-31127320 248 21 GAAAAAGCCCGATCACATCAG 1 78.5215199639 3.66835999012 6.97042423781e-12 chr16_-_31122620_31122641|78.5215199639|3.66835999012 4.07940348168268e-12 IN ENSMUST00000058033 Missing in GENCODE NA Excluded E3 2 0.0128991345359207 -0.014916523308454 -0.0171169461790406 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_31129613_31129625 ENSMUST00000058033.7 1255 chr16:31127433-31131259 1255 12 GCTGCATTACAG 1 78.8765236077 2.53693752037 8.87084358969e-07 chr16_-_31129613_31129625|78.8765236077|2.53693752037 4.91268286384461e-07 IN ENSMUST00000058033 Missing in GENCODE NA Neuronal N3 17 0.0585850045766001 0.0291215188776937 0.00960708769001029 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr16_-_31314398_31314407 ENSMUST00000115230.1 3 chr16:31311164-31314551 3 9 ACTTCTAAG 1 89.1823670843 -0.154999990016 5.02752543997e-05 chr16_-_31314398_31314407|89.1823670843|-0.154999990016 7.79821243013235e-06 IN ENSMUST00000115230 Novel Alt5 Excluded E2 3 -0.00183465070897742 0.00195467950250304 0.000228124939253885 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_31314455_31314464 ENSMUST00000115230.1 2 chr16:31311164-31314551 2 9 AAACTGACA 1 73.5212580788 -0.35100000409 5.02752543997e-05 chr16_-_31314455_31314464|73.5212580788|-0.35100000409 4.67794203996563e-05 IN ENSMUST00000115230 Novel NA Excluded E1 6 -0.00310729279226875 0.00860521033966979 0.00561432597228168 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_32096999_32097012 ENSMUST00000143011.7 1 chr16:32092485-32099475 1 13 ATGGTTTCCACAG 1 77.3642191337 2.94464708952 4.05881937171e-07 chr16_-_32096999_32097012|77.3642191337|2.94464708952 2.7931542156967e-07 IN ENSMUST00000143011 Novel Alt5 Excluded E2 3 -0.00015313626275803 0.000294448165060942 -0.0011689496079585 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_33993635_33993663 ENSMUST00000114973.7 0 chr16:33993030-34009269 0 28 ATCTTGAATCCAAATTTCATCCAGGAAG 1 88.8668274714 4.37487499556 0 chr16_-_33993635_33993663|88.8668274714|4.37487499556 0 IN ENSMUST00000114973 Annotated NA Included I1 1 -6.93612546213826e-08 2.60166649127799e-07 1.55135066803337e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_36756864_36756892 ENSMUST00000023616.8 50 chr16:36756389-36757121 50 28 TGTAAGCACGCCTACCACATAAATACAG 1 79.0310996934 0.0323125007562 0 chr16_-_36756864_36756892|79.0310996934|0.0323125007562 0 IN ENSMUST00000023616 Novel NA Excluded E2 3 0.00509460406361457 0.00102091628666534 -0.00819940726110622 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_36978748_36978778 ENSMUST00000075869.12 0 chr16:36970743-36990103 0 30 AGTTAAGAAGCCAGAAGCAGGGAAGCCATG 1 86.0904655765 0.950764712823 0 chr16_-_36978748_36978778|86.0904655765|0.950764712823 0 IN ENSMUST00000075869 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr16_-_38549620_38549636 ENSMUST00000036210.6 12 chr16:38549433-38550082 12 16 ATACCTGATGGCGCAG 1 76.1721844322 -0.0578000012785 5.72072167415e-10 chr16_-_38549620_38549636|76.1721844322|-0.0578000012785 4.49404846669665e-10 IN ENSMUST00000036210 Novel Alt3 Excluded E1 6 0.000630575693582074 0.000381157355948059 0.00104791546531268 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_38781090_38781114 ENSMUST00000057767.4 23 chr16:38780148-38784193 23 24 AGAGACAGCTGTGTGTGCCACCAG 1 84.6910979746 -0.0816428618106 0 chr16_-_38781090_38781114|84.6910979746|-0.0816428618106 0 IN ENSMUST00000057767 Missing in GENCODE NA Excluded E1 6 -0.000487715568318111 0.00107732696322671 0.000308638336457459 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_4042483_4042508 ENSMUST00000006137.8 15 chr16:4040431-4043952 15 25 ACCAGGCTGTCCTCGAACTCAAAGA 1 78.5068806384 0.154551725449 0 chr16_-_4042483_4042508|78.5068806384|0.154551725449 0 IN ENSMUST00000006137 Novel NA Excluded E1 6 -1.1817801162986e-05 -0.000777149509419906 -0.000158496379185816 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_4068319_4068338 ENSMUST00000150354.2 0 chr16:4060896-4068856 0 19 GTTCTGTCTCCAAACATGA 1 65.9486181081 2.63795654087 2.88746373478e-08 chr16_-_4068319_4068338|65.9486181081|2.63795654087 2.88597937769808e-08 IN ENSMUST00000150354 Annotated Alt3 Excluded E2 3 -0.0007038434719574 0.000268634578787558 -0.00319973284546953 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_42264472_42264495 ENSMUST00000102817.4 2 chr16:42249114-42291798 2 23 CCTCCCTAGTTCTGGAATTACAG 1 77.7236076698 0.109925927663 0 chr16_-_42264472_42264495|77.7236076698|0.109925927663 0 IN ENSMUST00000102817 Novel NA Excluded E1 6 1.01702876819723e-05 9.09001285889166e-06 -2.19886931184829e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_43881322_43881335 ENSMUST00000023387.13 47 chr16:43881213-43889566 47 13 CTGTGAAGCAGAG 1 69.3351705687 -0.042235280661 4.85218943691e-07 chr16_-_43881322_43881335|69.3351705687|-0.042235280661 4.82313547656155e-07 IN ENSMUST00000023387 Missing in GENCODE NA Excluded E1 6 0.00220613460499379 0.00148485844322965 -0.000438842906530045 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_44255966_44255981 ENSMUST00000136381.7 1346 chr16:44255027-44257932 1346 15 ATGTGTCTGACACAG 1 78.9589388671 2.69342106767 1.04992068373e-08 chr16_-_44255966_44255981|78.9589388671|2.69342106767 5.73861591579572e-09 IN ENSMUST00000136381 Annotated NA Muscular M1 22 0.0304734283050821 -0.199208857769223 0.0408560624232173 TRUE TRUE FALSE FALSE FALSE FALSE chr16_-_45390172_45390184 ENSMUST00000163230.7 174 chr16:45383457-45392244 174 12 GTGAACACACAG 1 83.4784853532 -0.391187501373 2.04215549049e-06 chr16_-_45390172_45390184|83.4784853532|-0.391187501373 5.21286260712905e-07 IN ENSMUST00000163230 Novel NA Excluded E1 6 4.72692229438957e-05 5.27805072787566e-05 0.000114393555386443 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_45394872_45394892 ENSMUST00000167355.7 1 chr16:45394860-45396968 1 20 GCCATGTATTCTTTATTTTT 1 60.6104433012 1.20475000019 7.40385530662e-12 chr16_-_45394872_45394892|60.6104433012|1.20475000019 7.40385530662024e-12 IN ENSMUST00000167355 Novel NA Excluded E1 6 -0.000466939397633414 0.00147718103701413 0.000441284223129374 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_45766656_45766677 ENSMUST00000134802.7 44 chr16:45763114-45770671 44 21 GAAGAATGAATTCTTCAGCAG 1 77.5854662986 2.50027997017 6.68975985718e-12 chr16_-_45766656_45766677|77.5854662986|2.50027997017 4.47397674463446e-12 IN ENSMUST00000134802 Novel NA Excluded E2 3 0.00188641307668841 -0.00900505924700674 0.000205860492823815 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_48927321_48927345 ENSMUST00000147358.7 2 chr16:48926102-48927541 2 24 GAGGACAGCCTGGAGATTTAAATG 1 77.7565116255 -0.103214283349 0 chr16_-_48927321_48927345|77.7565116255|-0.103214283349 0 IN ENSMUST00000147358 Novel Alt3 Excluded E2 3 0.00341619916031861 0.000441272970338623 0.00159770513946437 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_48945597_48945623 ENSMUST00000121869.7 0 chr16:48944928-48947674 0 26 GATAAGGATTCAGAAGATGAGCAAGT 1 81.4358160697 1.18680001528 6.03073146976e-13 chr16_-_48945597_48945623|81.4358160697|1.18680001528 2.15605311382205e-13 IN ENSMUST00000121869 Annotated Alt3 Included I2 10 0.00166776542024921 0.00142409571650197 -0.00477768388620805 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_55226933_55226963 ENSMUST00000036412.3 0 chr16:55226532-55232207 0 30 ATGAGACTCCAACCAACAATTCACAGCTTG 1 83.6099975959 4.26885293681 0 chr16_-_55226933_55226963|83.6099975959|4.26885293681 0 IN ENSMUST00000036412 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr16_-_56692029_56692036 ENSMUST00000127994.7 101 chr16:56691916-56694399 101 7 GTTCAAG 1 84.168985049 2.80099997399 0.000589197152944 chr16_-_56692029_56692036|84.168985049|2.80099997399 0.000136020714809781 IN ENSMUST00000127994 Novel NA Excluded E1 6 0.000578575810796458 -0.00126601168417838 0.0026817810718689 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_59618665_59618678 ENSMUST00000023405.15 911 chr16:59613844-59618794 911 13 AAAAAACAGTACA 1 80.7475260835 3.03747059142 2.87138350097e-07 chr16_-_59618665_59618678|80.7475260835|3.03747059142 1.15820132706723e-07 IN ENSMUST00000023405 Annotated NA Excluded E2 3 0.00713906215837431 0.00102729730224001 0.00342977801628223 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_66953273_66953300 ENSMUST00000120594.7 108 chr16:66882882-67620170 108 27 CGGCTGCTTCAAAAAGTAAAGTCAAAG 1 81.8972310372 2.80970967357 0 chr16_-_66953273_66953300|81.8972310372|2.80970967357 0 IN ENSMUST00000120594 Annotated NA Neuro-Muscular NM1 12 0.0597368626870291 -0.19805738201493 -0.101914203482105 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_67364234_67364248 ENSMUST00000120594.7 1 chr16:66882882-67620170 1 14 GTGAGTAACTGAAG 1 86.6110938535 2.14855557101 1.07286329883e-05 chr16_-_67364234_67364248|86.6110938535|2.14855557101 1.88368576614639e-06 IN ENSMUST00000120594 Novel NA Excluded E2 3 0.00344729149174158 -0.000880723465470134 -0.0108693069773354 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_74008774_74008786 ENSMUST00000117785.7 2120 chr16:73985712-74015870 2120 12 TTCGCCCTGTTG 1 81.7537725525 4.94893753529 7.01795663582e-06 chr16_-_74008774_74008786|81.7537725525|4.94893753529 2.37490286059128e-06 IN ENSMUST00000117785 Annotated NA Included I3 5 -0.0419537709535449 -0.0267604923807865 0.0583317386127335 TRUE TRUE TRUE 10.5 -1 12.5 -1 FALSE FALSE FALSE chr16_-_90249788_90249791 ENSMUST00000163419.7 3 chr16:90249712-90250056 3 3 TTA 1 61.0599810801 -0.12485713831 0.020359366808 chr16_-_90249788_90249791|61.0599810801|-0.12485713831 0.0203592128826733 IN ENSMUST00000163419 Novel NA Excluded E4 11 -0.00136028024969202 -0.000699353534806125 -0.0104310672637113 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_90940472_90940493 ENSMUST00000121759.7 611 chr16:90939034-90944354 611 21 GAGCAACCAACAGGGTAACAG 1 80.200657506 3.79535996258 4.70290473231e-12 chr16_-_90940472_90940493|80.200657506|3.79535996258 2.08699724169037e-12 IN ENSMUST00000121759 Annotated NA Neuronal N3 17 0.0579743077307136 0.0144575734189467 0.0428467029434229 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr16_-_90940472_90940496 ENSMUST00000121759.7 1258 chr16:90939034-90944354 1258 24 CAGGAGCAACCAACAGGGTAACAG 1 79.32098596 3.96239283096 0 chr16_-_90940472_90940496|79.32098596|3.96239283096 0 IN ENSMUST00000121759 Annotated NA Neuronal N1 18 0.0702879801832453 0.028486975878492 -0.00482986304021782 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr16_-_90971563_90971587 ENSMUST00000118246.2 2461 chr16:90969374-90973909 2461 24 TTTCTGAACAGACATTACAGTCAG 1 71.3612325042 3.98428570373 0 chr16_-_90971563_90971587|71.3612325042|3.98428570373 0 IN ENSMUST00000118246 Annotated NA Neuronal N1 18 0.0808955857891 0.0408362058440235 -0.0345500854298418 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr16_-_91583374_91583388 ENSMUST00000133180.7 1 chr16:91580294-91586941 1 14 TTTTTTACAGGCTG 1 74.1279269199 4.79133322835 9.64646413859e-08 chr16_-_91583374_91583388|74.1279269199|4.79133322835 8.74884825696753e-08 IN ENSMUST00000133180 Novel Alt3 Excluded E1 6 0.00030838549256263 2.6336238560791e-05 0.00316591631170694 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_93590272_93590286 ENSMUST00000023669.11 1 chr16:93590085-93590873 1 14 AGTCCATGACTGGA 1 68.1724145182 -0.387666672054 1.12049746148e-08 chr16_-_93590272_93590286|68.1724145182|-0.387666672054 1.11747926467842e-08 IN ENSMUST00000023669 Novel NA Excluded E1 6 0.000397233670215739 0.000548185251653068 0.000455804151675297 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_96081977_96082007 ENSMUST00000099502.8 0 chr16:96081873-96082121 0 30 GTGCTGGTGCAGGAGCTGGAGCAGTACCAG 1 82.4925060637 2.48279413055 0 chr16_-_96081977_96082007|82.4925060637|2.48279413055 0 IN ENSMUST00000099502 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_96127310_96127340 ENSMUST00000050884.13 0 chr16:96127203-96127589,chr16:96127203-96127431 0 30 CCCAAGCGCCGCTCCGCGAGGCTGTCGGCC 1 81.097419774 1.98794122265 0 chr16_-_96127310_96127340|81.097419774|1.98794122265 0 IN ENSMUST00000050884 Annotated NA Included I1 1 5.88699484824073e-118 1.10038119924979e-118 1.15504061474472e-117 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_96127431_96127461 ENSMUST00000050884.13 0 chr16:96127203-96127589,chr16:96127340-96127589 0 30 GTTAGCGCGGATGGAGCCGCCAAGGCGGAG 1 90.1393439366 0.833411762162 0 chr16_-_96127431_96127461|90.1393439366|0.833411762162 0 IN ENSMUST00000050884 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr16_-_97803415_97803444 ENSMUST00000095849.9 1 chr16:97799637-97803709 1 29 GATCAAAACCCTATGGCATCATCATCAGT 1 79.3070026419 -0.0885454529163 0 chr16_-_97803415_97803444|79.3070026419|-0.0885454529163 0 IN ENSMUST00000095849 Novel NA Excluded E3 2 -0.0044206678608387 0.0024792088184177 0.00491022148807004 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_13848354_13848375 ENSMUST00000170827.8 258 chr17:13846639+13849107 258 21 GAAGTAGACCAGGTTGATCAG 1 87.9028762235 3.99731995106 2.16981987933e-12 chr17_+_13848354_13848375|87.9028762235|3.99731995106 3.50053319664312e-13 IN ENSMUST00000170827 Annotated NA Muscular M2 20 -0.0205051119968391 -0.0373466769577772 0.0522873369512531 TRUE FALSE TRUE FALSE FALSE FALSE chr17_+_14984413_14984440 ENSMUST00000061688.9 1 chr17:14982389+14984817 1 27 GGGGAAATATTATTGCCGTCCTCAACG 1 82.483149325 0.231709676765 0 chr17_+_14984413_14984440|82.483149325|0.231709676765 0 IN ENSMUST00000061688 Novel NA Excluded E1 6 0.000529184763494765 0.000460952702795477 -0.0015983944382787 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_14988073_14988103 ENSMUST00000061688.9 0 chr17:14987698+14988897 0 30 TCAACAATTCTATATACCACGTTTGATGAA 1 85.0289073163 1.84785294544 0 chr17_+_14988073_14988103|85.0289073163|1.84785294544 0 IN ENSMUST00000061688 Annotated NA Included I1 1 -3.30142427227928e-32 -1.93442044636931e-31 -3.5772344551149e-32 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_15019441_15019471 ENSMUST00000097395.3 0 chr17:15019068+15020265 0 30 TCAACAATTCTGTATACCACGTTTGATGAA 1 85.0289073163 1.51455885249 0 chr17_+_15019441_15019471|85.0289073163|1.51455885249 0 IN ENSMUST00000097395 Annotated NA Included I1 1 -8.75327021095191e-107 2.12531171488985e-107 -2.07174690572785e-107 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_15045107_15045136 ENSMUST00000227548.1 0 chr17:15041741+15047564 0 29 AGCTTGCACAAGTCTTTGGACATGCTGTG 1 84.5671470817 1.60024243458 0 chr17_+_15045107_15045136|84.5671470817|1.60024243458 0 IN ENSMUST00000227548 Annotated Alt5 Excluded E3 2 0.000453145665891967 -0.00163507506606433 0.00343172460247748 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_15050746_15050776 ENSMUST00000097393.10 0 chr17:15050373+15051570 0 30 TCAACAATTCTGTATACCACGTTTGATGAA 1 85.0289073163 1.8232353219 0 chr17_+_15050746_15050776|85.0289073163|1.8232353219 0 IN ENSMUST00000097393 Annotated NA Included I1 1 1.02761835741943e-51 5.29789070364285e-52 2.1995491561558e-51 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_17388822_17388852 ENSMUST00000024620.6 23 chr17:17387573+17389967 23 30 ATTCTGAGTGCACCGTGGAGCCCATGGAAA 1 81.1854974141 1.08885294878 0 chr17_+_17388822_17388852|81.1854974141|1.08885294878 0 IN ENSMUST00000024620 Novel NA Excluded E1 6 0.000288431958545975 0.000152494227945109 0.00029181063420043 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_17836720_17836744 ENSMUST00000226899.1 0 chr17:17827327+17838086,chr17:17836153+17837508,chr17:17836153+17838086 0 24 CCCCGGCCTGCATCCCTCCTTGTG 1 84.4652242304 1.27564285962 4.71445105177e-12 chr17_+_17836720_17836744|84.4652242304|1.27564285962 1.04538599998705e-12 IN ENSMUST00000226899 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_20958827_20958834 ENSMUST00000147983.2 0 chr17:20957112+20958939 0 7 GTCAAAG 1 74.2581271476 5.29390912164 0.104896720161 chr17_+_20958827_20958834|74.2581271476|5.29390912164 0.0945317126131984 IN ENSMUST00000147983 Annotated Alt5 Excluded E1 6 9.0642780760757e-07 3.07137219827994e-06 -9.16959327605475e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_21427627_21427634 ENSMUST00000165230.7 63 chr17:21423317+21427736,chr17:21423561+21427736,chr17:21427371+21427736 2,2,59 7 ACACCGG 1 73.1676009767 0.072909089652 8.43966254677e-05 chr17_+_21427627_21427634|73.1676009767|0.072909089652 7.9486263930395e-05 IN ENSMUST00000165230 Novel NA Neuronal N6 15 0.0125885201532023 0.00169442245850098 0.0235447745277227 TRUE TRUE TRUE FALSE FALSE FALSE chr17_+_23812051_23812077 ENSMUST00000190686.6 1 chr17:23811731+23812427 1 26 GCTTCCTGAAGGAGGTGGGCTCAGAG 1 76.1400400641 2.76089998086 0 chr17_+_23812051_23812077|76.1400400641|2.76089998086 0 IN ENSMUST00000190686 Novel Alt5 Excluded E1 6 6.6448540837838e-05 8.42763007710223e-06 0.000413275786189711 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_23823002_23823009 ENSMUST00000190686.6 2 chr17:23822700+23823790 2 7 GGCTCTG 1 74.853643861 1.44018181075 0.000257220590628 chr17_+_23823002_23823009|74.853643861|1.44018181075 0.000224152866042826 IN ENSMUST00000190686 Novel NA Excluded E2 3 0.00269642899713987 -0.00175093245953679 -0.00666823955170989 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_24042053_24042080 ENSMUST00000059482.5 0 chr17:24038361+24042801 0 27 GGACTGAAGGGGCCAGGACTCTGAGAG 1 89.5896786955 0.179354838757 0 chr17_+_24042053_24042080|89.5896786955|0.179354838757 0 IN ENSMUST00000059482 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_24415486_24415505 ENSMUST00000163717.1 190 chr17:24415162+24418037 190 19 GATGGGAGAGGTGACCAAG 1 69.3976639158 1.35217391408 4.05293576478e-11 chr17_+_24415486_24415505|69.3976639158|1.35217391408 4.0276337820444e-11 IN ENSMUST00000163717 Novel NA Excluded E1 6 0.0018303399670701 -0.000376785839052828 0.00757711329665401 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_24415494_24415505 ENSMUST00000163717.1 7 chr17:24415162+24418037 7 11 AGGTGACCAAG 1 59.5729156319 1.10986666381 2.66357901735e-06 chr17_+_24415494_24415505|59.5729156319|1.10986666381 2.66357424705266e-06 IN ENSMUST00000163717 Novel NA Excluded E1 6 0.000273602009671288 -4.9900640630589e-05 0.00109360200293768 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_24571401_24571420 ENSMUST00000035565.4 393 chr17:24571311+24571520 393 19 GACCCTGCTGCAGCTGTGG 1 79.0998423752 0.172521729508 2.64321897703e-12 chr17_+_24571401_24571420|79.0998423752|0.172521729508 1.41231470962566e-12 IN ENSMUST00000035565 Missing in GENCODE NA Neuronal N1 18 0.05445982145719 0.0297918459659613 -0.017061035349721 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr17_+_24571414_24571420 ENSMUST00000035565.4 96 chr17:24571311+24571520 96 6 CTGTGG 1 76.3192336948 0.520599991828 0.000189763272132 chr17_+_24571414_24571420|76.3192336948|0.520599991828 0.000146954597338711 IN ENSMUST00000035565 Missing in GENCODE NA Neuronal N6 15 0.0119520472444512 0.00587335918379408 -0.00323709771929533 TRUE TRUE FALSE FALSE FALSE FALSE chr17_+_25588675_25588686 ENSMUST00000137201.7 34 chr17:25579379+25612295 34 11 GTATTCTTTTG 1 85.4106691612 3.48100004991 3.06409745975e-05 chr17_+_25588675_25588686|85.4106691612|3.48100004991 6.04886960930973e-06 IN ENSMUST00000137201 Annotated Alt3 Excluded E3 2 -0.00306645503805697 0.011465219955499 0.0120120580966454 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_25876660_25876669 ENSMUST00000163356.1 1 chr17:25876562+25885961 1 9 GAACCCAGA 1 71.9017481668 2.13753849612 0.000139852519732 chr17_+_25876660_25876669|71.9017481668|2.13753849612 0.000135750995008399 IN ENSMUST00000163356 Novel Alt3 Excluded E1 6 1.15826742601789e-06 -0.000649387299871892 2.7998157057841e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_26207292_26207322 ENSMUST00000147220.7 0 chr17:26205775+26207395 0 30 ACCTAGAGCTCGGATTTCTATAAGTGTGAG 1 82.0868862614 1.5828823697 0 chr17_+_26207292_26207322|82.0868862614|1.5828823697 0 IN ENSMUST00000147220 Annotated NA Included I1 1 1.1375903701973e-14 1.53116869471173e-13 -9.41782200871394e-14 TRUE TRUE FALSE FALSE FALSE FALSE chr17_+_26207298_26207322 ENSMUST00000152676.7 0 chr17:26205775+26207395 0 24 AGCTCGGATTTCTATAAGTGTGAG 1 78.3249593975 1.68321430284 5.65592017665e-12 chr17_+_26207298_26207322|78.3249593975|1.68321430284 3.40949490862386e-12 IN ENSMUST00000152676 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_26279332_26279362 ENSMUST00000025023.13 0 chr17:26277634+26279960 0 30 GTCTGGATCAAGAACCCGAGATCGCAGAAG 1 86.0801420898 3.23470586056 0 chr17_+_26279332_26279362|86.0801420898|3.23470586056 0 IN ENSMUST00000025023 Annotated NA Included I1 1 6.94694557423894e-116 8.69732221753275e-117 1.11736766632125e-115 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_26789833_26789844 ENSMUST00000135824.7 1 chr17:26786788+26790925 1 11 TACCATGGGAG 1 77.8648219183 -0.0576666673645 3.83890428579e-06 chr17_+_26789833_26789844|77.8648219183|-0.0576666673645 2.47219345017591e-06 IN ENSMUST00000135824 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_26961100_26961110 ENSMUST00000201702.3 1 chr17:26960521+26961435 1 10 GCCTCAACAG 1 80.2096344509 2.22821428946 3.35275565433e-06 chr17_+_26961100_26961110|80.2096344509|2.22821428946 1.48554226198083e-06 IN ENSMUST00000201702 Novel Alt5 FALSE TRUE TRUE 15.5 -1 FALSE FALSE FALSE chr17_+_28725492_28725522 ENSMUST00000114758.7 0 chr17:28724855+28725796 0 30 TATATACATTCGGCTGACATAATTCACAGG 1 85.3019445478 4.66091173537 0 chr17_+_28725492_28725522|85.3019445478|4.66091173537 0 IN ENSMUST00000114758 Annotated NA Included I1 1 9.35782416207707e-118 1.74913925343628e-118 1.83602453398929e-117 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_28775553_28775583 ENSMUST00000004986.12 0 chr17:28775362+28776134 0 30 TACATCCACTCCGCTGGCATCGTCCACAGG 1 84.4692293289 3.93800000616 0 chr17_+_28775553_28775583|84.4692293289|3.93800000616 0 IN ENSMUST00000004986 Annotated NA Included I1 1 6.13071891315452e-11 1.32471495924104e-10 8.04981512199626e-11 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_31420244_31420257 ENSMUST00000141314.7 116 chr17:31415357+31443165 116 13 CACTCCCTACAAG 1 87.7184345327 2.024294095 1.61764779605e-06 chr17_+_31420244_31420257|87.7184345327|2.024294095 2.63403039935106e-07 IN ENSMUST00000141314 Annotated Alt3 Excluded E2 3 0.00107304461470406 -0.00155296052485684 -0.0089042069569375 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_32055104_32055124 ENSMUST00000081339.12 0 chr17:32053954+32055910 0 20 GTTCCAGGACCTCTGTGAAG 1 94.6704913976 1.60500000293 1.75714376383e-09 chr17_+_32055104_32055124|94.6704913976|1.60500000293 3.81777387481463e-10 IN ENSMUST00000081339 Annotated Alt3 Included I2 10 0.000820492324163144 -0.000188358303041919 -0.00122570474600715 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_3381795_3381816 ENSMUST00000169838.8 60 chr17:3326726+3412631 60 21 AGCTCTTCAATATGAAAGCAG 1 80.2053531387 -0.198159997463 7.62767626838e-11 chr17_+_3381795_3381816|80.2053531387|-0.198159997463 3.38219452444832e-11 IN ENSMUST00000169838 Novel NA Excluded E2 3 0.00795859399736378 0.00193280565505838 0.0100068560694668 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_33843601_33843631 ENSMUST00000002379.14 1 chr17:33843291+33846015 1 30 GGCTGGTCACCCGGTACCTTCTTGCAGCAG 1 80.0382783836 0.0424117553322 0 chr17_+_33843601_33843631|80.0382783836|0.0424117553322 0 IN ENSMUST00000002379 Novel Alt5 Excluded E1 6 -9.64690184479774e-05 0.000106903780238517 0.000786905874183404 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_33930414_33930441 ENSMUST00000173266.7 1 chr17:33930044+33931725 1 27 GAGGAAGAGGATGAGGAAGAAGAAGAG 1 72.0970312449 2.03019352913 0 chr17_+_33930414_33930441|72.0970312449|2.03019352913 0 IN ENSMUST00000173266 Novel Alt5 Excluded E3 2 0.0016127896428009 0.0010860784795263 0.00347586671860995 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_34192836_34192857 ENSMUST00000041633.14 0 chr17:34191526+34192941 0 21 GTCTCGGGAATGCTGCTGAAG 1 82.749557428 2.29224002063 3.16049408866e-10 chr17_+_34192836_34192857|82.749557428|2.29224002063 9.04779584587345e-11 IN ENSMUST00000041633 Annotated Alt3 Excluded E2 3 -0.000483467200215443 -0.00117989399211342 0.00315489944676954 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_34192941_34192965 ENSMUST00000041633.14 0 chr17:34192857+34193127 0 24 CTTCAGTTCACCCAGGCTGTTCAG 1 84.9056469575 2.24578573169 8.5975671027e-13 chr17_+_34192941_34192965|84.9056469575|2.24578573169 1.80189196896663e-13 IN ENSMUST00000041633 Annotated Alt5 Excluded E2 3 -0.000868011719669428 0.00120163772582299 0.00231580385708836 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_34243887_34243916 ENSMUST00000095342.9 0 chr17:34243578+34244088 0 29 CATCTGTGGAGACTCAGCCTGGCAATGAG 1 90.0336576738 0.656757572271 0 chr17_+_34243887_34243916|90.0336576738|0.656757572271 0 IN ENSMUST00000095342 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34268460_34268484 ENSMUST00000040828.5 0 chr17:34268033+34269094 0 24 GACCTCGAGGCCCTCCTCCAGCAG 1 85.9214227988 0.476642855044 3.6699532302e-12 chr17_+_34268460_34268484|85.9214227988|0.476642855044 6.86228851520809e-13 IN ENSMUST00000040828 Annotated Alt5 Included I2 10 -0.00210751655812622 -0.00160234846374502 -0.000698588575474701 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_34315555_34315579 ENSMUST00000074557.9 0 chr17:34315153+34315873 0 24 GACAGTCTGGACTTCAGCCAACAG 1 85.2507414352 1.43582142969 2.45847786573e-12 chr17_+_34315555_34315579|85.2507414352|1.43582142969 4.9427129056312e-13 IN ENSMUST00000074557 Annotated NA Included I1 1 9.3881471249934e-17 3.44278771979041e-16 -2.26425294996482e-16 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_34362658_34362679 ENSMUST00000025198.13 0 chr17:34361203+34363016,chr17:34361203+34363191 0 21 AGAGGCTCCAGACCGAACTGG 1 89.48192083 1.17944000304 4.06544131692e-10 chr17_+_34362658_34362679|89.48192083|1.17944000304 6.28944674119225e-11 IN ENSMUST00000025198 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34382105_34382126 ENSMUST00000080254.5 0 chr17:34381550+34382240 0 21 ATGACCTCCAGGCCGACCTAG 1 89.5982758465 0.524000006774 1.5120349417e-10 chr17_+_34382105_34382126|89.5982758465|0.524000006774 2.33839614338649e-11 IN ENSMUST00000080254 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34382240_34382267 ENSMUST00000080254.5 0 chr17:34382126+34382461 0 27 ATCGGAGGAAGGCGCTGTACAAAGAAG 1 91.479601809 0.363580641487 0 chr17_+_34382240_34382267|91.479601809|0.363580641487 0 IN ENSMUST00000080254 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34382461_34382488 ENSMUST00000080254.5 0 chr17:34382267+34384360 0 27 ACTGGAAGAAGGCCTTGCTGTACCCTG 1 86.7221317565 1.3257096618 0 chr17_+_34382461_34382488|86.7221317565|1.3257096618 0 IN ENSMUST00000080254 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34384360_34384387 ENSMUST00000080254.5 0 chr17:34382488+34385267 0 27 ACTGGAGGAAGGAGCTGTTCCAGGAGG 1 84.6613014229 1.01993548329 0 chr17_+_34384360_34384387|84.6613014229|1.01993548329 0 IN ENSMUST00000080254 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34420386_34420413 ENSMUST00000114175.7 0 chr17:34419584+34421957,chr17:34419584+34421852 0 27 GTGCCGGGCTTCTGGACCATGAGGATG 1 82.5705364308 1.07774192636 0 chr17_+_34420386_34420413|82.5705364308|1.07774192636 0 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34421852_34421882 ENSMUST00000114175.7 0 chr17:34419584+34421957,chr17:34420413+34421957 0 30 GTATTTCCCATGGGAGACACAAAAGACGAG 1 81.5337338225 0.372647056356 0 chr17_+_34421852_34421882|81.5337338225|0.372647056356 0 IN ENSMUST00000114175 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34421957_34421987 ENSMUST00000114175.7 0 chr17:34421882+34434526,chr17:34421882+34422079,chr17:34421882+34428094,chr17:34421882+34439836 0 30 GATCTCGTTGCTCGTTTTCATCAGATAGCG 1 81.8860098561 0.860705884283 0 chr17_+_34421957_34421987|81.8860098561|0.860705884283 0 IN ENSMUST00000114175 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34434526_34434547 ENSMUST00000139063.7 0 chr17:34429981+34437170,chr17:34421987+34440327,chr17:34421987+34435782,chr17:34421987+34439836,chr17:34421987+34443437,chr17:34421987+34440866,chr17:34421987+34437170,chr17:34421882+34439836,chr17:34429981+34435782 0 21 GACTGAGCAGATCCAATCCTG 1 88.8542942752 0.267919998989 1.31331034936e-09 chr17_+_34434526_34434547|88.8542942752|0.267919998989 2.04879446741302e-10 IN ENSMUST00000139063 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34435782_34435803 ENSMUST00000223957.1 0 chr17:34429981+34437170,chr17:34434547+34437170,chr17:34421987+34440327,chr17:34421987+34439836,chr17:34421987+34443437,chr17:34421987+34440866,chr17:34421987+34437170,chr17:34421882+34439836,chr17:34434547+34436194 0 21 CTATAAACCAAGGACCACAAA 1 83.7649189487 -0.0177199971676 3.68800101569e-10 chr17_+_34435782_34435803|83.7649189487|-0.0177199971676 9.0202512126325e-11 IN ENSMUST00000223957 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34436194_34436215 ENSMUST00000223957.1 0 chr17:34429981+34437170,chr17:34434547+34437170,chr17:34435803+34437170,chr17:34421987+34440327,chr17:34421987+34439836,chr17:34421987+34443437,chr17:34421987+34440866,chr17:34421987+34437170,chr17:34421882+34439836 0 21 CTATTGCTCAAGAACCGCCAA 1 81.4883311973 0.0296799964458 3.05135472445e-10 chr17_+_34436194_34436215|81.4883311973|0.0296799964458 1.08117070851677e-10 IN ENSMUST00000223957 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34437699_34437720 ENSMUST00000139063.7 0 chr17:34437209+34439180,chr17:34421987+34440327,chr17:34421987+34439836,chr17:34421987+34443437,chr17:34421987+34440866,chr17:34421882+34439836 0 21 CCGGCAACGCTGGAGACATCT 1 79.0478451483 0.241439991519 4.42469172413e-10 chr17_+_34437699_34437720|79.0478451483|0.241439991519 2.38412400932475e-10 IN ENSMUST00000139063 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34439180_34439201 ENSMUST00000139063.7 0 chr17:34421987+34440327,chr17:34421987+34439836,chr17:34421987+34443437,chr17:34421987+34440866,chr17:34421882+34439836,chr17:34437720+34439836 0 21 CTGGAACCATTGGACCTATAA 1 77.1244656517 1.42176003046 4.75438355352e-10 chr17_+_34439180_34439201|77.1244656517|1.42176003046 3.37009198325688e-10 IN ENSMUST00000139063 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34439836_34439857 ENSMUST00000114175.7 0 chr17:34421987+34440866,chr17:34439201+34440327,chr17:34421987+34440327,chr17:34421987+34443437 0 21 TGCAGTTCTCGGCACCTATTC 1 77.8021559376 1.57400000334 2.50338416663e-10 chr17_+_34439836_34439857|77.8021559376|1.57400000334 1.6261181290389e-10 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34440327_34440348 ENSMUST00000114175.7 0 chr17:34439857+34440866,chr17:34421987+34440866,chr17:34421987+34443437 0 21 CCGGAGCTACAGGACCTATCA 1 74.7466455833 1.39784000486 2.23735696636e-10 chr17_+_34440327_34440348|74.7466455833|1.39784000486 1.96262006646464e-10 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34440866_34440887 ENSMUST00000114175.7 0 chr17:34440348+34443437,chr17:34421987+34443437 0 21 AACTGACTCAAAAAACCTTCC 1 82.7641967535 1.19208001494 6.96672941558e-10 chr17_+_34440866_34440887|82.7641967535|1.19208001494 1.9896828629129e-10 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34443437_34443458 ENSMUST00000114175.7 0 chr17:34440887+34444037 0 21 TGCAAACTCCTGGACCTATTG 1 83.6133121602 1.30275999576 7.1054273576e-10 chr17_+_34443437_34443458|83.6133121602|1.30275999576 1.7773149618705e-10 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34444037_34444058 ENSMUST00000114175.7 0 chr17:34443458+34445486 0 21 TACAATGTATGGATTCCAGTG 1 83.5228867037 0.871679984182 4.55429471913e-10 chr17_+_34444037_34444058|83.5228867037|0.871679984182 1.15475962125799e-10 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34445486_34445498 ENSMUST00000114175.7 0 chr17:34444058+34446018,chr17:34444058+34446956 0 12 AAAGCTGCACCC 1 82.8207169796 0.322312488686 0.000115864692439 chr17_+_34445486_34445498|82.8207169796|0.322312488686 3.27891887728082e-05 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34446018_34446033 ENSMUST00000114175.7 0 chr17:34445498+34448093,chr17:34444058+34446956,chr17:34445498+34446956 0 15 CTGAGGGATCCAACG 1 88.6097761071 0.23600000692 1.34017228748e-06 chr17_+_34446018_34446033|88.6097761071|0.23600000692 2.10374274223213e-07 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34446956_34446977 ENSMUST00000114175.7 0 chr17:34446033+34448093,chr17:34445498+34448093 0 21 CTGTAATACCTGTGGACATAT 1 82.0303660353 -0.464719994664 4.62705429527e-10 chr17_+_34446956_34446977|82.0303660353|-0.464719994664 1.49331436105626e-10 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34448093_34448120 ENSMUST00000114175.7 0 chr17:34446977+34448302 0 27 GTTGTCAACCAGCACTGAAGCCTAGCT 1 80.2386714149 0.0467096820113 0 chr17_+_34448093_34448120|80.2386714149|0.0467096820113 0 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34448302_34448332 ENSMUST00000114175.7 0 chr17:34448120+34448765 0 30 GTTGTCAACAGCTAGCAATCAAACCTAGCT 1 81.0945195303 -0.239470582675 0 chr17_+_34448302_34448332|81.0945195303|-0.239470582675 0 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34449250_34449274 ENSMUST00000114175.7 0 chr17:34448822+34449808 0 24 CTCCGCCAGACACCTTGCCCTTAT 1 85.2716646222 -0.246321442404 3.40349970429e-12 chr17_+_34449250_34449274|85.2716646222|-0.246321442404 6.82565115539546e-13 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34449808_34449829 ENSMUST00000114175.7 0 chr17:34449274+34451630,chr17:34449274+34452499 0 21 TAATTACACAGAGAACTTCAA 1 81.9150813468 0.7684400177 5.30008037458e-10 chr17_+_34449808_34449829|81.9150813468|0.7684400177 1.74453451684542e-10 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34451630_34451654 ENSMUST00000078615.11 0 chr17:34449274+34452499,chr17:34449829+34452499,chr17:34449829+34459862 0 24 CAAAATGTGGACCACCTATAATAT 1 82.385369679 0.510857154374 9.38626953939e-12 chr17_+_34451630_34451654|82.385369679|0.510857154374 2.85327317328665e-12 IN ENSMUST00000078615 Annotated NA FALSE TRUE TRUE FALSE FALSE FALSE chr17_+_34452499_34452514 ENSMUST00000114175.7 0 chr17:34451654+34459862,chr17:34449829+34459862 0 15 TGAAAAAGCCATCAG 1 87.6562519259 0.394894737358 7.62657148468e-06 chr17_+_34452499_34452514|87.6562519259|0.394894737358 1.24602653717165e-06 IN ENSMUST00000114175 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_34600350_34600377 ENSMUST00000174496.8 116 chr17:34600137+34600494 116 27 AAACCGGCGATGAGGGGCCAGCTGAAG 1 86.4711570933 0.492903220918 0 chr17_+_34600350_34600377|86.4711570933|0.492903220918 0 IN ENSMUST00000174496 Annotated Alt3 Other O2 21 -0.019558894472441 -0.0137847597884882 -0.0288926064251911 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_34912459_34912467 ENSMUST00000137071.7 0 chr17:34911665+34912633 0 8 ATAACAAG 1 78.5164100106 5.10774998118 0.0144807539283 chr17_+_34912459_34912467|78.5164100106|5.10774998118 0.00848144790437899 IN ENSMUST00000137071 Annotated Alt5 Excluded E1 6 9.25197674939344e-05 3.62973784061765e-05 0.000244648431868098 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_35139064_35139076 ENSMUST00000166426.8 8 chr17:35138782+35139234 8 12 GCCCCAATTCAG 1 70.1666082993 2.30318749323 1.01514155526e-07 chr17_+_35139064_35139076|70.1666082993|2.30318749323 1.00469140340564e-07 IN ENSMUST00000166426 Novel Alt5 Excluded E1 6 0.00049366110373907 -0.00025485570083681 0.0013085101540926 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_35146756_35146766 ENSMUST00000172571.7 11 chr17:35146353+35147140 11 10 ACAATGCAGG 1 77.1197009655 3.56007139385 2.87964525991e-06 chr17_+_35146756_35146766|77.1197009655|3.56007139385 2.04237508016902e-06 IN ENSMUST00000172571 Novel Alt3 Excluded E1 6 0.000475863034883971 6.95011067277155e-05 0.00130029746161187 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_36854283_36854301 ENSMUST00000130367.7 0 chr17:36852693+36856655,chr17:36852693+36856070,chr17:36852693+36856201 0 18 GATGTCTGCACTACACAG 1 82.537287208 0.396045458588 4.88216743699e-08 chr17_+_36854283_36854301|82.537287208|0.396045458588 1.44712267724501e-08 IN ENSMUST00000130367 Annotated NA Included I1 1 7.10783979558288e-69 -1.22681464219884e-68 -1.57523788808363e-68 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_36856201_36856224 ENSMUST00000179968.7 0 chr17:36856088+36856655,chr17:36852693+36856655,chr17:36854711+36856655,chr17:36854301+36856655 0 23 GACACCAAGGACTTCGCCAACAA 1 88.1775016838 1.72403703685 7.67386154621e-12 chr17_+_36856201_36856224|88.1775016838|1.72403703685 1.22291066162461e-12 IN ENSMUST00000179968 Annotated NA Included I1 1 1.19958796208857e-95 -2.96588917544132e-95 -2.52505838911846e-95 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_36873272_36873295 ENSMUST00000060524.10 0 chr17:36872569+36874165 0 23 GATATCAGAAGCACTCTAATAAG 1 88.0564165079 1.76962963009 2.22968310482e-11 chr17_+_36873272_36873295|88.0564165079|1.76962963009 3.5713654256142e-12 IN ENSMUST00000060524 Annotated NA Included I1 1 -3.78583412876742e-12 -1.39309061593799e-12 -7.37483256608987e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_36905413_36905436 ENSMUST00000078438.4 0 chr17:36901879+36905906 0 23 GACATTAAAGACGCCTTGAGCAG 1 89.3114279305 0.530296300296 5.68434188608e-11 chr17_+_36905413_36905436|89.3114279305|0.530296300296 8.80440165218488e-12 IN ENSMUST00000078438 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_36945173_36945196 ENSMUST00000040498.11 0 chr17:36943450+36945403 0 23 GATATGAGGAAGACATGGAGACG 1 80.8119874531 1.68218517821 2.73701061815e-11 chr17_+_36945173_36945196|80.8119874531|1.68218517821 1.09159348227195e-11 IN ENSMUST00000040498 Annotated Alt5 Included I2 10 0.000218960548896935 -0.00350703296865134 0.000773531854443932 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_37003285_37003315 ENSMUST00000089968.12 0 chr17:37002777+37004796,chr17:37002600+37004796,chr17:37002759+37004796,chr17:37002777+37003463,chr17:37002777+37006049 0 30 GGCTCCTGCACCAGGAAAGAACAATCAGAG 1 85.6513893911 0.134558817481 0 chr17_+_37003285_37003315|85.6513893911|0.134558817481 0 IN ENSMUST00000089968 Annotated Alt5 Included I2 10 -0.000209830109178492 -0.00419054148357535 0.0036729899423361 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_37049776_37049797 ENSMUST00000025338.15 0 chr17:37048606+37050998 0 21 TGAATCGAACGCCACACTCAG 1 82.9029941322 1.91847998157 5.38193489774e-10 chr17_+_37049776_37049797|82.9029941322|1.91847998157 1.50301771029149e-10 IN ENSMUST00000025338 Annotated Alt5 Included I3 5 -0.000899896561422574 -0.0052956716174044 0.0105597421468524 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_46163482_46163509 ENSMUST00000166563.1 115 chr17:46161326+46164193 115 27 GCTGAAGATGGAAACATCGAATATAAA 1 87.8331667937 5.00845159758 0 chr17_+_46163482_46163509|87.8331667937|5.00845159758 0 IN ENSMUST00000166563 Annotated Alt5 Included I2 10 0.002527679300521 -0.00793360869277748 -0.00141133931853919 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_46168145_46168175 ENSMUST00000172170.7 0 chr17:46167890+46168486 0 30 GACAAGCTGCGGACAGGGGAGAAGGCAGTG 1 80.8874283169 4.53449998796 0 chr17_+_46168145_46168175|80.8874283169|4.53449998796 0 IN ENSMUST00000172170 Annotated NA Included I1 1 6.27531217047742e-12 -5.4968738176719e-10 1.9877387003773e-11 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_46214189_46214216 ENSMUST00000087031.5 0 chr17:46208257+46214576 0 27 AAGACAGATTCATCTCAGGAGGCAGAG 1 91.6342814748 2.1911290562 0 chr17_+_46214189_46214216|91.6342814748|2.1911290562 0 IN ENSMUST00000087031 Annotated NA Included I1 1 -2.67209221201497e-113 7.47563986721046e-115 -2.77161224176648e-113 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_55990211_55990234 ENSMUST00000011733.8 0 chr17:55988775+55990418 0 23 GCCGCCAAGGAAATCAAAGATGG 1 82.8773753126 3.1328888977 2.29647412198e-11 chr17_+_55990211_55990234|82.8773753126|3.1328888977 6.43984865433822e-12 IN ENSMUST00000011733 Annotated NA Included I1 1 -2.76835303238412e-14 2.44403349083862e-13 1.0405531953105e-13 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_56015470_56015480 ENSMUST00000159996.7 4 chr17:56015278+56015903 4 10 CAAAGGCCCA 1 70.773208087 3.59407143508 2.27614978621e-06 chr17_+_56015470_56015480|70.773208087|3.59407143508 2.24191088915582e-06 IN ENSMUST00000159996 Novel Alt3 Excluded E1 6 0.000388936872961451 7.6039536639262e-05 0.000475006993179216 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_56597787_56597815 ENSMUST00000182533.7 0 chr17:56595714+56598643,chr17:56595714+56599622 0 28 GAGATGGAAGAGGCATCTTTGGAGCCAG 1 80.4474199104 2.18262494712 0 chr17_+_56597787_56597815|80.4474199104|2.18262494712 0 IN ENSMUST00000182533 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_57260215_57260242 ENSMUST00000224947.1 29 chr17:57257344+57261289 29 27 AAGTCGGAGGACAGCTCGCTGGAGTCG 1 75.6016650575 0.0103548308534 0 chr17_+_57260215_57260242|75.6016650575|0.0103548308534 0 IN ENSMUST00000224947 Missing in GENCODE NA Excluded E1 6 -7.42098850230248e-06 -0.000594513460252472 5.16278549296804e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_57305458_57305481 ENSMUST00000169220.8 0 chr17:57305377+57305662 0 23 ATTTCGCAGGAACCATGAAGAAG 1 86.7025205846 1.30303703745 3.66640051652e-12 chr17_+_57305458_57305481|86.7025205846|1.30303703745 6.38933350671778e-13 IN ENSMUST00000169220 Annotated NA Included I1 1 1.64428803369868e-09 6.15333639676309e-09 -1.81197639192332e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_69208070_69208076 ENSMUST00000223610.1 0 chr17:69075932+69210185 0 6 AGGGAG 1 71.8553097403 2.21890001222 1 chr17_+_69208070_69208076|71.8553097403|2.21890001222 0.971438217591497 RESCUED ENSMUST00000223610 Annotated Alt5 Excluded E1 6 0.000320568787470019 -7.56064976876649e-05 0.000596956220817888 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_70718195_70718225 ENSMUST00000133983.7 466 chr17:70662809+70761074 466 30 GTGTCATAAAACTGAGTTCTGCCGTTGAAG 1 86.0514503929 3.02164706407 0 chr17_+_70718195_70718225|86.0514503929|3.02164706407 0 IN ENSMUST00000133983 Annotated NA Excluded E4 11 -0.00222917102710724 -0.0654438565920006 0.0903938743579334 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_71121125_71121148 ENSMUST00000073211.11 0 chr17:71120682+71122556,chr17:71120816+71122556,chr17:71104605+71392055 0 23 ACAAGCTGCCATTGCTGAAAAAA 1 80.0965249452 3.97044448417 2.43431941271e-11 chr17_+_71121125_71121148|80.0965249452|3.97044448417 1.09994235941713e-11 IN ENSMUST00000073211 Annotated NA Included I1 1 1.68739171209155e-10 -2.43199905006584e-11 4.27551254108761e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_71577993_71578016 ENSMUST00000124001.7 43 chr17:71569188+71578101 43 23 CCTTTTTCCCCCCTTTTTTTTAG 1 72.9899265213 -0.132777775879 0 chr17_+_71577993_71578016|72.9899265213|-0.132777775879 0 IN ENSMUST00000124001 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_75268824_75268841 ENSMUST00000001927.11 91 chr17:75266610+75273866 91 17 ATTAGGAAATTGTGCAC 1 76.1938672067 1.20642856056 1.64504854183e-09 chr17_+_75268824_75268841|76.1938672067|1.20642856056 1.28962851508874e-09 IN ENSMUST00000001927 Novel NA Excluded E2 3 0.00768538936580952 0.00257810173790687 0.0101270824698567 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_75278951_75278974 ENSMUST00000001927.11 0 chr17:75276623+75282327 0 23 TGGTAACAGCACCTCCTGAGAAG 1 82.192227257 2.25399999472 8.06750222182e-11 chr17_+_75278951_75278974|82.192227257|2.25399999472 2.53317367082673e-11 IN ENSMUST00000001927 Annotated NA Included I1 1 3.27477587000433e-25 8.75265415625553e-26 7.06439879429893e-25 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_79618977_79619007 ENSMUST00000223924.1 23 chr17:79611961+79621305,chr17:79615368+79621305 1,22 30 CCATCCCTCAGGCCAGCCTGCCTTCCTTTG 1 81.0013319369 0.165470590363 0 chr17_+_79618977_79619007|81.0013319369|0.165470590363 0 IN ENSMUST00000223924 Novel NA Excluded E1 6 0.00446955212573823 0.00209918179332985 -0.00131154271620852 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_8317849_8317871 ENSMUST00000150728.7 514 chr17:8311285+8318843,chr17:8311285+8320599 482,32 22 GATTCCCAGATGATCTGCTGAG 1 78.9928095707 0.693230764439 1.6724399643e-12 chr17_+_8317849_8317871|78.9928095707|0.693230764439 9.09161634865541e-13 IN ENSMUST00000150728 Annotated NA Neuro-Muscular NM5 7 0.0369987910344658 -0.0318844086257163 -0.0571286671437953 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr17_+_83427999_83428025 ENSMUST00000049503.8 0 chr17:83421735+83440030,chr17:83427351+83428215,chr17:83427351+83440030 0 26 ACATAAAGATGTCATCGTCAATCAAG 1 82.7378873996 2.66913336714 1.85185200507e-13 chr17_+_83427999_83428025|82.7378873996|2.66913336714 5.30686605770825e-14 IN ENSMUST00000049503 Annotated NA Included I1 1 8.70998352311303e-46 -2.28242935130026e-44 2.93719345144277e-46 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_86635064_86635094 ENSMUST00000097275.8 240 chr17:86630207+86654540 240 30 TTTGCTTCAGTGTGAATGTCCCTCTGTCAG 1 89.172009071 2.92155883154 0 chr17_+_86635064_86635094|89.172009071|2.92155883154 0 IN ENSMUST00000097275 Missing in GENCODE NA Excluded E2 3 0.00791681841658431 0.00269276204730841 0.00810502470358714 TRUE FALSE FALSE FALSE FALSE FALSE chr17_+_87636196_87636204 ENSMUST00000053577.8 55 chr17:87636072+87636457 55 8 GATTGAAG 1 81.042315143 None 2.22322860228e-05 chr17_+_87636196_87636204|81.042315143|None 8.51586597638843e-06 IN ENSMUST00000053577 Missing in GENCODE NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_+_8920503_8920532 ENSMUST00000115715.7 0 chr17:8898989+8929091 0 29 ATGAACCATCTCCCAAGGAAGTCAGCAGG 1 85.5297863145 2.08742422362 0 chr17_+_8920503_8920532|85.5297863145|2.08742422362 0 IN ENSMUST00000115715 Annotated NA Included I1 1 3.61720181668785e-06 -1.7244301551214e-05 -8.39209791302106e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_23706147_23706177 ENSMUST00000201734.3 0 chr17:23706057-23706266 0 30 GATTCCCCAGAGCCAATGGCTTTAGGAATG 1 86.4598323321 0.874529410921 0 chr17_-_23706147_23706177|86.4598323321|0.874529410921 0 IN ENSMUST00000201734 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_23843956_23843983 ENSMUST00000122936.7 0 chr17:23843871-23844076,chr17:23843871-23844099 0 27 GGTCACGTGAAGAAAGCCAGGCGGCAG 1 85.4304529666 -0.420322590177 0 chr17_-_23843956_23843983|85.4304529666|-0.420322590177 0 IN ENSMUST00000122936 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_23974219_23974246 ENSMUST00000024936.9 0 chr17:23973771-23975128,chr17:23974106-23975128,chr17:23974106-23974475 0 27 GGGCACGTGGAGATATATTGCCCTCAG 1 85.1282751909 0.203354843866 0 chr17_-_23974219_23974246|85.1282751909|0.203354843866 0 IN ENSMUST00000024936 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_23997310_23997337 ENSMUST00000041649.6 0 chr17:23996837-23997922 0 27 CTCCCATCAGTGCTGCCACCATCCGAG 1 87.175053153 0.319129031272 0 chr17_-_23997310_23997337|87.175053153|0.319129031272 0 IN ENSMUST00000041649 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_24184380_24184398 ENSMUST00000202853.1 319 chr17:24164882-24185203,chr17:24183848-24185203,chr17:24183852-24185203 1,10,308 18 TGTCTCACTTTCTAAAAG 1 83.9100001889 2.2929999957 7.5544903666e-11 chr17_-_24184380_24184398|83.9100001889|2.2929999957 1.80914172531743e-11 IN ENSMUST00000202853 Annotated NA Neuro-Muscular NM4 16 0.0256699840948143 -0.00523387180492513 0.0833742870749429 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_24597045_24597063 ENSMUST00000226473.1 0 chr17:24596953-24597204 0 18 ATGGCCCTGCATGCAAAT 1 79.050745392 4.08950000172 3.3323885873e-09 chr17_-_24597045_24597063|79.050745392|4.08950000172 1.79472614547649e-09 IN ENSMUST00000226473 Annotated Alt5_3 Excluded E1 6 2.22423929416497e-05 -2.47094809261816e-05 -2.98140619167203e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_24908410_24908428 ENSMUST00000146923.7 0 chr17:24907386-24909149,chr17:24907386-24912735,chr17:24907386-24912747 0 18 TGCGCGATGATTTTTTTG 1 72.5009592384 4.57209091159 2.53348840795e-08 chr17_-_24908410_24908428|72.5009592384|4.57209091159 2.42981297304823e-08 IN ENSMUST00000146923 Annotated NA Included I1 1 1.39953851807412e-09 -5.49964333531672e-09 -3.22655513272227e-09 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr17_-_24909149_24909161 ENSMUST00000146923.7 0 chr17:24907386-24912735,chr17:24907386-24912747,chr17:24908428-24912735,chr17:24908428-24912747 0 12 GGGAGTTTTCAG 1 76.9833549833 5.25675003976 0.000255730772685 chr17_-_24909149_24909161|76.9833549833|5.25675003976 0.000184330205983851 IN ENSMUST00000146923 Annotated NA Included I1 1 4.23637337287572e-35 -7.02102106272403e-35 -1.15594394762888e-34 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_24920471_24920495 ENSMUST00000146923.7 44 chr17:24918136-24923815,chr17:24918139-24923815 23,21 24 TCCTCGCCAGTCGTGGAGGAAAAG 1 79.7947269633 3.63007137179 0 chr17_-_24920471_24920495|79.7947269633|3.63007137179 0 IN ENSMUST00000146923 Annotated NA Neuronal N5 14 0.00666039029940997 0.0417276923097534 -0.134522523783138 TRUE TRUE TRUE 10.5 1 FALSE FALSE FALSE chr17_-_25251100_25251124 ENSMUST00000182435.7 0 chr17:25250655-25251437 0 24 GTCTTGCTAAGCTACCTTCAGCAG 1 75.1297884966 1.88714285461 2.67874611382e-12 chr17_-_25251100_25251124|75.1297884966|1.88714285461 2.29227747894356e-12 IN ENSMUST00000182435 Annotated Alt5 Excluded E2 3 -0.0031726106340452 0.00294785700274523 0.00947889654217731 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_25378780_25378796 ENSMUST00000161035.1 0 chr17:25377883-25380224 0 16 CTGTTTGGGAGGCTAG 1 74.5815388507 3.66594999433 5.40399777926e-07 chr17_-_25378780_25378796|74.5815388507|3.66594999433 4.78651127733265e-07 IN ENSMUST00000161035 Annotated Alt5 Excluded E2 3 -0.00139362575325077 0.00248094522634955 0.00377524235080746 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_25382719_25382737 ENSMUST00000159610.7 145 chr17:25381573-25383072 145 18 GCACTTTCCCCAACCCAG 1 84.8289976588 1.55063635924 8.39577296574e-11 chr17_-_25382719_25382737|84.8289976588|1.55063635924 1.77609038587434e-11 IN ENSMUST00000159610 Missing in GENCODE NA Excluded E3 2 -0.00168996036409689 0.00422225415402711 0.0736101151592081 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_25840650_25840675 ENSMUST00000176882.1 0 chr17:25840568-25840835 0 25 GACTCTCAGGCACAGGCTATCACAG 1 81.8923627709 3.16251722081 2.11386463889e-13 chr17_-_25840650_25840675|81.8923627709|3.16251722081 6.98330282489223e-14 IN ENSMUST00000176882 Annotated Alt5 Excluded E2 3 8.56563800972608e-05 -0.000505802400533519 -0.00510258361297242 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_25963246_25963266 ENSMUST00000212099.1 2 chr17:25963145-25964026 2 20 GGGCTGCTGGGGAACTGCTG 1 79.470383039 4.69341674944 3.04467562273e-12 chr17_-_25963246_25963266|79.470383039|4.69341674944 1.53044243944578e-12 IN ENSMUST00000212099 Novel Alt5 Excluded E2 3 -5.37084377427207e-05 0.000883292474906346 0.000182425437973699 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_26225911_26225927 ENSMUST00000118487.7 2 chr17:26220580-26244005 2 16 GTACTCCACCGACCAG 1 79.0704256173 -0.166350002214 2.1286723273e-08 chr17_-_26225911_26225927|79.0704256173|-0.166350002214 1.14280034324565e-08 IN ENSMUST00000118487 Novel Alt5 Excluded E2 3 -0.000680441271783882 -7.59259400310618e-05 -0.000443549529684161 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_27021662_27021677 ENSMUST00000078691.11 8 chr17:27021347-27022438 8 15 CAGCAACATGCACAG 1 71.7880862338 1.2616842197 3.8999132812e-09 chr17_-_27021662_27021677|71.7880862338|1.2616842197 3.79272713235679e-09 IN ENSMUST00000078691 Novel NA Excluded E2 3 0.00679430309271306 0.00193212175339831 0.011447933119696 TRUE TRUE FALSE FALSE FALSE FALSE chr17_-_27021662_27021682 ENSMUST00000078691.11 310 chr17:27021347-27022438 310 20 GCCAGCAGCAACATGCACAG 1 76.7581372466 1.36454168179 3.79074549528e-12 chr17_-_27021662_27021682|76.7581372466|1.36454168179 2.80331313717852e-12 IN ENSMUST00000078691 Annotated NA Neuronal N3 17 0.0539827071497833 0.0192869657370087 0.0410488157976977 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr17_-_27564384_27564410 ENSMUST00000154473.7 0 chr17:27564339-27564561,chr17:27564254-27564561 0 26 GTAATGTATGTGCAGAAGAAAAAGCG 1 86.1382505447 2.47646662959 4.26325641456e-14 chr17_-_27564384_27564410|86.1382505447|2.47646662959 7.7715611723761e-15 IN ENSMUST00000154473 Annotated Alt3 Other O1 4 0.00242939919847788 -0.00127226482648737 0.00175380562268064 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_27622590_27622603 ENSMUST00000025050.11 2 chr17:27596834-27623086 2 13 GATGAGTCGTAGG 1 77.0834824456 0.196235288373 1.52707681811e-06 chr17_-_27622590_27622603|77.0834824456|0.196235288373 1.08778155882838e-06 IN ENSMUST00000025050 Novel NA Excluded E1 6 0.000805251612146534 -0.000506696656873895 -0.000802591090714661 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_28335484_28335496 ENSMUST00000154873.7 0 chr17:28335036-28336510,chr17:28335036-28336273 0 12 GCTATGAACCTG 1 90.0965998682 3.18937501684 7.2774607888e-05 chr17_-_28335484_28335496|90.0965998682|3.18937501684 1.12864672375812e-05 IN ENSMUST00000154873 Annotated Alt5 Excluded E3 2 0.0034754120326435 -0.0085066026233971 0.00127895518153457 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_28359318_28359324 ENSMUST00000041819.12 0 chr17:28359232-28362372 0 6 AAAGTG 1 89.3695018586 0.923999992013 0.533971155467 chr17_-_28359318_28359324|89.3695018586|0.923999992013 0.0826649266750874 IN ENSMUST00000041819 Annotated Alt3 Other O1 4 0.00773863494261239 0.00964756527235449 0.0217760309649009 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_28600868_28600894 ENSMUST00000130643.7 0 chr17:28600456-28602687,chr17:28599869-28602687 0 26 TCAGCACTGCTCCACAGCCTAAGCCA 1 84.0657847095 4.06163340261 4.8872017544e-13 chr17_-_28600868_28600894|84.0657847095|4.06163340261 1.14463993838854e-13 IN ENSMUST00000130643 Annotated NA Included I1 1 -2.36564086162429e-118 -4.42179209497076e-119 -4.64143649776135e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_29208629_29208641 ENSMUST00000024805.13 55 chr17:29204748-29209423 55 12 ATATGTCCCTGT 1 75.5868876252 -0.538937494741 1.08475738059e-06 chr17_-_29208629_29208641|75.5868876252|-0.538937494741 8.97092667151433e-07 IN ENSMUST00000024805 Novel NA Excluded E1 6 9.59937472238922e-05 2.73551486591378e-05 0.000568995684496531 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_29839548_29839572 ENSMUST00000073556.11 498 chr17:29838589-29839804 498 24 CTATCAACTTGCCCAGCCTGTCAG 1 86.6956842958 2.0879642847 0 chr17_-_29839548_29839572|86.6956842958|2.0879642847 0 IN ENSMUST00000073556 Annotated NA Included I1 1 -0.000131451969463114 -3.00739848055941e-05 0.00011610413578679 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_30603386_30603413 ENSMUST00000024823.12 2 chr17:30600179-30604019 2 27 TCACAAAACAGACCTGTGCCACACCAT 1 83.0762836954 2.76499997488 0 chr17_-_30603386_30603413|83.0762836954|2.76499997488 0 IN ENSMUST00000024823 Novel NA Excluded E2 3 -0.00181661485531052 -0.00238411207498223 -0.000829167515731633 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_33647445_33647459 ENSMUST00000148178.7 100 chr17:33646659-33648812 100 14 GGCTGGGATTACAG 1 79.1141709603 0.14183332709 3.10683385685e-08 chr17_-_33647445_33647459|79.1141709603|0.14183332709 1.65615453573409e-08 IN ENSMUST00000148178 Novel NA Excluded E1 6 0.000209386345396878 3.93345975795102e-06 0.000547747449733692 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_33669168_33669176 ENSMUST00000148178.7 0 chr17:33669078-33677273,chr17:33669078-33670080 0 8 GGATGTGC 1 74.4448821281 5.18775008122 0.0149918802639 chr17_-_33669168_33669176|74.4448821281|5.18775008122 0.0133797482258546 IN ENSMUST00000148178 Annotated NA Included I1 1 9.07053038759148e-119 1.69543907596799e-119 1.77965689881235e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_33694573_33694590 ENSMUST00000173015.7 119 chr17:33688242-33696036,chr17:33692129-33696036,chr17:33692153-33696036,chr17:33692203-33696036 1,12,94,12 17 AGACTTGAGCATTCTAA 1 71.4900171366 0.00633333552451 8.6674845079e-10 chr17_-_33694573_33694590|71.4900171366|0.00633333552451 8.46706038615253e-10 IN ENSMUST00000173015 Novel NA Excluded E1 6 0.0007124956201468 -0.000434103395024221 0.00129532961150578 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_33694573_33694602 ENSMUST00000173015.7 25 chr17:33692153-33696036,chr17:33692203-33696036 10,15 29 GACTGAATCTAGAGACTTGAGCATTCTAA 1 75.6536968112 -0.0583333318884 0 chr17_-_33694573_33694602|75.6536968112|-0.0583333318884 0 IN ENSMUST00000173015 Novel NA Excluded E1 6 0.00016815017796793 -2.85592260338329e-05 0.00057635955827014 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_33823157_33823160 ENSMUST00000087342.12 2 chr17:33823116-33823196 2 3 GAG 1 75.2115822753 -1.44328574411 0.00444579046999 chr17_-_33823157_33823160|75.2115822753|-1.44328574411 0.00378257176292307 IN ENSMUST00000087342 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_34116597_34116620 ENSMUST00000114242.8 17 chr17:34116335-34116907 17 23 CCCATGGATAGCCATCCCCAGAG 1 80.1530451713 2.54877775576 0 chr17_-_34116597_34116620|80.1530451713|2.54877775576 0 IN ENSMUST00000114242 Novel Alt5 Excluded E1 6 -0.000466606087482447 4.86205760933733e-05 0.000366724664931179 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_34470978_34471005 ENSMUST00000065841.4 0 chr17:34470087-34472256 0 27 CTTGGAAGAAGGCCCAGCTCTATGCAG 1 86.134383553 1.17687099066 0 chr17_-_34470978_34471005|86.134383553|1.17687099066 0 IN ENSMUST00000065841 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_34472256_34472283 ENSMUST00000065841.4 0 chr17:34471005-34472365 0 27 ATCGAAGGAAAGCAGCTTACAGGGCAG 1 88.6377082164 0.296645179151 0 chr17_-_34472256_34472283|88.6377082164|0.296645179151 0 IN ENSMUST00000065841 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_34472365_34472386 ENSMUST00000065841.4 0 chr17:34472283-34472591 0 21 GCGCACTCATGGTGGAGCGTG 1 85.3569455986 0.382079985142 6.43467501504e-11 chr17_-_34472365_34472386|85.3569455986|0.382079985142 1.27799992810651e-11 IN ENSMUST00000065841 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_34508888_34508915 ENSMUST00000075483.4 0 chr17:34508539-34511961 0 27 ATTGGCGCAAGGAACAATTCCAGGCCT 1 82.0789451178 0.788935489232 0 chr17_-_34508888_34508915|82.0789451178|0.788935489232 0 IN ENSMUST00000075483 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_34511961_34511988 ENSMUST00000075483.4 0 chr17:34508915-34513637 0 27 CCTGGAGGAAGGCCCAGCTGTATGCAG 1 85.05773712 1.01841935338 0 chr17_-_34511961_34511988|85.05773712|1.01841935338 0 IN ENSMUST00000075483 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_34513637_34513664 ENSMUST00000075483.4 0 chr17:34511988-34513746 0 27 CTCAAAGGAAGGCAGCTTACAGGGCAG 1 88.1133510545 -0.0548386930698 0 chr17_-_34513637_34513664|88.1133510545|-0.0548386930698 0 IN ENSMUST00000075483 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_34513746_34513767 ENSMUST00000075483.4 0 chr17:34513664-34513974 0 21 ATGCACTCATGGTGGAGCTTG 1 84.6464204104 0.480000004172 6.48014975013e-11 chr17_-_34513746_34513767|84.6464204104|0.480000004172 1.40309985852127e-11 IN ENSMUST00000075483 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_34602290_34602309 ENSMUST00000015622.7 0 chr17:34602197-34603333 0 19 TTGGCCCTGTCTTCACCAG 1 88.2103020593 3.03699996614 4.04907041229e-09 chr17_-_34602290_34602309|88.2103020593|3.03699996614 6.44383990611175e-10 IN ENSMUST00000015622 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_35186584_35186604 ENSMUST00000097336.4 0 chr17:35185310-35186945 0 20 TGAAGAGACTGGAAAGGAAT 1 86.675935017 1.23420831468 1.46519596456e-09 chr17_-_35186584_35186604|86.675935017|1.23420831468 2.55892418365988e-10 IN ENSMUST00000097336 Annotated NA Included I1 1 -1.10081430843909e-43 -9.79287808150946e-43 -9.12182969879236e-44 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_35641192_35641207 ENSMUST00000095467.3 24 chr17:35638623-35643586 24 15 ACTGATTTATTTATT 1 75.7519598311 0.175000011921 1.79861671112e-08 chr17_-_35641192_35641207|75.7519598311|0.175000011921 1.46735856798585e-08 IN ENSMUST00000095467 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_36030370_36030400 ENSMUST00000102678.4 0 chr17:36030231-36030577 0 30 GTGTAAAAGGATGCTATGCTCATGTTCTAG 1 93.7202472541 0.167852943274 0 chr17_-_36030370_36030400|93.7202472541|0.167852943274 0 IN ENSMUST00000102678 Annotated Alt3 Included I2 10 0.0019047150176513 -0.00285015622029081 0.00739441343815516 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_36262109_36262132 ENSMUST00000173665.7 0 chr17:36261606-36263728 0 23 GATGTGAAAAGTACCCTAGAAAA 1 88.0207504153 2.38485186851 2.97717406283e-11 chr17_-_36262109_36262132|88.0207504153|2.38485186851 4.77629047423989e-12 IN ENSMUST00000173665 Annotated NA Included I1 1 -3.39315514948363e-28 4.09042866583391e-27 1.28686102535475e-27 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_36864248_36864271 ENSMUST00000025329.12 0 chr17:36862898-36864960,chr17:36862898-36864865 0 23 GATGCCAGACTCAATCAGAGCAG 1 90.6885258037 1.26996297803 2.75690581475e-11 chr17_-_36864248_36864271|90.6885258037|1.26996297803 4.32864855071102e-12 IN ENSMUST00000025329 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_36882641_36882664 ENSMUST00000087158.10 0 chr17:36882462-36883148,chr17:36882462-36883250 0 23 GATGCCAGTGACTTACTGGACAG 1 85.2436289327 0.829851837898 9.36495325732e-12 chr17_-_36882641_36882664|85.2436289327|0.829851837898 1.88438153969628e-12 IN ENSMUST00000087158 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_37012062_37012083 ENSMUST00000102665.10 0 chr17:37011517-37012335,chr17:37011517-37014749 0 21 GACAGTTTCTTGAAGAGCTAA 1 88.9978563401 2.12252001733 1.80307324626e-10 chr17_-_37012062_37012083|88.9978563401|2.12252001733 2.80475642711053e-11 IN ENSMUST00000102665 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_37014749_37014770 ENSMUST00000102665.10 0 chr17:37012452-37015067,chr17:37012083-37015067 0 21 AGAATCTCCATCGGACTTTTG 1 87.2809811027 1.91076000042 5.88897819398e-10 chr17_-_37014749_37014770|87.2809811027|1.91076000042 9.84047288099532e-11 IN ENSMUST00000102665 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_37015067_37015088 ENSMUST00000102665.10 0 chr17:37014770-37017487 0 21 GAAAACTTCGTGCAGAAGTAG 1 89.6106364091 1.89663999289 6.12089934293e-10 chr17_-_37015067_37015088|89.6106364091|1.89663999289 9.46597245032876e-11 IN ENSMUST00000102665 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_43502540_43502565 ENSMUST00000117137.7 0 chr17:43502438-43502652 0 25 ATTAAGCATCTTTTGAATGGATCTG 1 89.144042435 1.16782758507 1.64313007645e-13 chr17_-_43502540_43502565|89.144042435|1.16782758507 2.55351295663786e-14 IN ENSMUST00000117137 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_45424897_45424908 ENSMUST00000024727.8 50 chr17:45424600-45425851 50 11 TAGAGCTTTCT 1 71.6810189026 -0.0330000072718 1.1511140402e-06 chr17_-_45424897_45424908|71.6810189026|-0.0330000072718 1.12136765606508e-06 IN ENSMUST00000024727 Novel NA Excluded E1 6 0.000156023216539106 8.05664794399486e-05 -1.52807078892776e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_45634267_45634279 ENSMUST00000120717.7 0 chr17:45633983-45638694 0 12 GTCCCAAAGGAG 1 81.1623990443 2.04974999279 0.000279804596231 chr17_-_45634267_45634279|81.1623990443|2.04974999279 0.000104945591133276 IN ENSMUST00000120717 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_46024064_46024094 ENSMUST00000024747.13 0 chr17:46021122-46024443,chr17:46022348-46024443,chr17:46018879-46024443 0 30 ACCAAAGAAAGACAGAACAAAGCCAGAAAA 1 81.4845677858 2.9156176827 0 chr17_-_46024064_46024094|81.4845677858|2.9156176827 0 IN ENSMUST00000024747 Annotated NA Included I1 1 -2.31142235659871e-07 2.04882611144882e-07 4.48868175387534e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_46246207_46246214 ENSMUST00000173349.7 1 chr17:46245748-46247728 1 7 AATTTCC 1 72.9187669697 3.29027270729 0.000469336065569 chr17_-_46246207_46246214|72.9187669697|3.29027270729 0.000445333288383587 IN ENSMUST00000173349 Novel Alt3 Excluded E1 6 -5.37113300508967e-05 -3.98053773407076e-05 -0.000205610471126243 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_46260879_46260909 ENSMUST00000180283.1 65 chr17:46260202-46261135 65 30 GCCTCTCTTAGCCACAGCTGGATTTTTGCA 1 66.6326613089 4.13435296101 0 chr17_-_46260879_46260909|66.6326613089|4.13435296101 0 IN ENSMUST00000180283 Annotated Alt3 Neuro-Muscular NM2 9 0.0448762106062355 -0.0169104480149564 -0.0160633092069316 TRUE TRUE TRUE 10.5 1 10.5 1 TRUE TRUE FALSE chr17_-_46262401_46262430 ENSMUST00000180283.1 0 chr17:46261580-46263688 0 29 GAGTCCCTGACTGACGCAGAGCGGATGAA 1 88.102889461 2.22342422875 0 chr17_-_46262401_46262430|88.102889461|2.22342422875 0 IN ENSMUST00000180283 Annotated Alt3 Included I2 10 -0.000144303050653466 -0.00107376704168748 0.00028082343005683 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_46500905_46500930 ENSMUST00000066026.7 0 chr17:46500875-46501006 0 25 ACCCCAGGGCTCCTCAGGGCTGGAA 1 66.1475610176 0.682517247018 9.05941988094e-14 chr17_-_46500905_46500930|66.1475610176|0.682517247018 9.05941988094128e-14 IN ENSMUST00000066026 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_56421832_56421844 ENSMUST00000223859.1 5601 chr17:56421352-56422128 5601 12 CAAACCTGACAG 1 76.0188513081 1.89649999142 1.76951273523e-07 chr17_-_56421832_56421844|76.0188513081|1.89649999142 1.41013135279699e-07 IN ENSMUST00000223859 Annotated NA Included I1 1 0.000838091243470438 -0.000214446626551715 -0.00178895873801635 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_56427790_56427817 ENSMUST00000067538.5 426 chr17:56426504-56427938 426 27 TGGGAGATGGACGACACTGCCGAATAT 1 76.9376070911 2.71022579813 0 chr17_-_56427790_56427817|76.9376070911|2.71022579813 0 IN ENSMUST00000067538 Annotated NA Neuronal N3 17 0.0465456436676088 -0.00289264236834475 0.0232263670982059 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_56445898_56445910 ENSMUST00000223859.1 1215 chr17:56438055-56447359 1215 12 AGCTTCGAGAAG 1 80.0289906983 5.40537511557 2.16252868024e-06 chr17_-_56445898_56445910|80.0289906983|5.40537511557 9.88587757433379e-07 IN ENSMUST00000223859 Missing in GENCODE Alt3 Neuronal N4 13 0.0259192511213792 0.0112294261874089 0.0319864143792899 TRUE TRUE FALSE 15.5 1 FALSE FALSE FALSE chr17_-_56448915_56448933 ENSMUST00000223859.1 60 chr17:56447470-56451651 60 18 AAAGCACCCCCATCCGAG 1 89.3307628887 3.92013637112 2.36411779042e-10 chr17_-_56448915_56448933|89.3307628887|3.92013637112 3.66109365046441e-11 IN ENSMUST00000223859 Novel NA Excluded E1 6 -0.000313667906015899 0.000498877891798054 -0.000261561229876253 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_56450352_56450361 ENSMUST00000223859.1 48 chr17:56447470-56451651 48 9 AAAGCTTTG 1 78.1341302651 3.32169230598 6.21061116542e-05 chr17_-_56450352_56450361|78.1341302651|3.32169230598 3.84997255122865e-05 IN ENSMUST00000223859 Missing in GENCODE NA Excluded E1 6 0.000405518248813425 0.000158195738948347 -0.000117081801311619 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_56576877_56576905 ENSMUST00000144255.7 0 chr17:56574952-56577842,chr17:56576012-56577842 0 28 GCTGATGAAGAAGCCCCCATGGAACCAG 1 79.1674802023 1.82743751979 0 chr17_-_56576877_56576905|79.1674802023|1.82743751979 0 IN ENSMUST00000144255 Annotated Alt3 Included I3 5 0.000560563181116403 -0.00277799185781651 0.00997592984992643 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_66810368_66810380 ENSMUST00000223982.1 37 chr17:66809653-66814466 37 12 TGCCAATCAATG 1 76.7308956716 5.27031243593 1.116887974e-06 chr17_-_66810368_66810380|76.7308956716|5.27031243593 8.28440452904644e-07 IN ENSMUST00000223982 Annotated NA Neuronal N6 15 0.0155768334013055 0.00392538322335445 0.0124353200953907 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr17_-_66814270_66814297 ENSMUST00000223982.1 22 chr17:66809653-66814466 22 27 ACCCATTTGTGCCAACTGCAATCTTAG 1 75.6917797736 5.26645162413 0 chr17_-_66814270_66814297|75.6917797736|5.26645162413 0 IN ENSMUST00000223982 Annotated NA Neuronal N4 13 0.0246838832161973 0.00380948834074705 0.0229337744434659 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr17_-_73333497_73333506 ENSMUST00000095208.3 0 chr17:73331179-73337314 0 9 GTGCCCCAG 1 87.5977636773 0.800153854948 0.0230826877496 chr17_-_73333497_73333506|87.5977636773|0.800153854948 0.00378355531018748 IN ENSMUST00000095208 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_7742892_7742922 ENSMUST00000097425.9 0 chr17:7741783-7746564 0 30 ACAATCCTCTGCTGGTTGTGAGGCCACCAG 1 88.529466977 3.57835287228 0 chr17_-_7742892_7742922|88.529466977|3.57835287228 0 IN ENSMUST00000097425 Annotated NA Included I1 1 5.58840058069805e-18 3.34845297078943e-19 -1.48016940245009e-17 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_78379869_78379898 ENSMUST00000070039.13 45 chr17:78378745-78381607 45 29 CCATGGTATGAAACCTGGACGGCTCTGAG 1 73.8945608794 2.06984850719 0 chr17_-_78379869_78379898|73.8945608794|2.06984850719 0 IN ENSMUST00000070039 Missing in GENCODE NA Excluded E1 6 0.000496171567786641 -8.41255871752173e-05 0.00209564474244014 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_79850886_79850901 ENSMUST00000068282.6 354 chr17:79850278-79852524 354 15 AGGAGTCCCAGGAAG 1 88.7376630451 4.09673681385 8.10177880339e-09 chr17_-_79850886_79850901|88.7376630451|4.09673681385 1.26738908257096e-09 IN ENSMUST00000068282 Annotated Alt5 Neuronal N6 15 0.0130112716231467 0.00663768393909045 -0.000749001152821194 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr17_-_80205067_80205081 ENSMUST00000063417.9 1 chr17:80204387-80205261 1 14 GTTTCTTCGTTTGA 1 73.3808379446 4.94249998199 1.24564393245e-08 chr17_-_80205067_80205081|73.3808379446|4.94249998199 1.16488898527223e-08 IN ENSMUST00000063417 Novel NA Excluded E1 6 0.000340906731727612 0.000342335712492155 0.000842199554440558 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_80434649_80434673 ENSMUST00000068714.5 8 chr17:80434152-80434894 8 24 ACAGGACCTCCTGAGGAGCAGCTG 1 81.5280023884 1.64375001086 0 chr17_-_80434649_80434673|81.5280023884|1.64375001086 0 IN ENSMUST00000068714 Novel NA Excluded E1 6 -0.000793507245116264 -0.00157409964155487 0.00168190427713815 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_81441651_81441666 ENSMUST00000086538.9 0 chr17:81437813-81445486,chr17:81437813-81441772 0 15 GAAAAGAGATGTATG 1 82.4303925104 2.03236843802 3.66940421337e-06 chr17_-_81441651_81441666|82.4303925104|2.03236843802 1.10709107281615e-06 IN ENSMUST00000086538 Annotated NA FALSE FALSE FALSE FALSE TRUE FALSE chr17_-_81441772_81441790 ENSMUST00000086538.9 0 chr17:81437813-81445486,chr17:81441666-81441860,chr17:81441666-81442202 0 18 GTGGCTTCACATTAACAG 1 90.5098846003 3.79163631526 2.50292941928e-09 chr17_-_81441772_81441790|90.5098846003|3.79163631526 3.91129018062486e-10 IN ENSMUST00000086538 Annotated NA Included I1 1 3.14103625341568e-06 -5.40884583285129e-07 -6.65209236031456e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_81442202_81442223 ENSMUST00000086538.9 0 chr17:81441881-81445486,chr17:81437813-81445486,chr17:81441790-81445486 0 21 CCCTGTTGTTGAATGAGCTTG 1 84.2428031574 3.96168001056 8.13997758087e-10 chr17_-_81442202_81442223|84.2428031574|3.96168001056 1.86008208835631e-10 IN ENSMUST00000086538 Annotated NA Included I1 1 0.000102664137285515 -8.99275909976159e-06 -0.000176494112015341 TRUE TRUE FALSE 13.5 -1 FALSE TRUE FALSE chr17_-_84756257_84756285 ENSMUST00000112308.8 0 chr17:84754598-84761951 0 28 GTCGATGAACATAGATCTTTGGAGCAAG 1 84.8546510052 2.47837500321 0 chr17_-_84756257_84756285|84.8546510052|2.47837500321 0 IN ENSMUST00000112308 Annotated NA Included I1 1 2.96189968342754e-104 -7.30516207234719e-105 -7.40694276936115e-105 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_87276445_87276474 ENSMUST00000137539.7 0 chr17:87275370-87277411 0 29 ATTGAACCCAAAGCTCCATGGTTGTTTAG 1 84.446269066 0 0 chr17_-_87276445_87276474|84.446269066|0 0 IN ENSMUST00000137539 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr17_-_90561801_90561828 ENSMUST00000072671.13 792 chr17:90560860-90565304 792 27 TTGCATTGATGAAAGCTGACTTGCAAG 1 75.5673800334 5.66032257388 0 chr17_-_90561801_90561828|75.5673800334|5.66032257388 0 IN ENSMUST00000072671 Annotated NA Neuro-Muscular NM4 16 0.00749717131063763 -0.0298453730151175 0.012502837858748 TRUE FALSE TRUE 12.5 1 FALSE FALSE FALSE chr17_-_90620864_90620891 ENSMUST00000177342.2 1707 chr17:90597629-90623419 1707 27 ATTGTATCAGGATTAACTGTAATTCCA 1 80.8587711467 6.08835469523 0 chr17_-_90620864_90620891|80.8587711467|6.08835469523 0 IN ENSMUST00000177342 Annotated NA Included I2 10 0.00416691515755511 -0.0190494705359473 -0.017750655699129 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_90701987_90702011 ENSMUST00000160844.9 0 chr17:90700905-90704065 0 24 CACTCAGGCATTGGACACGCTATG 1 73.6164482213 6.23967855317 1.1127099242e-11 chr17_-_90701987_90702011|73.6164482213|6.23967855317 1.0316192344817e-11 IN ENSMUST00000160844 Annotated Alt3 Other O1 4 0.0107022134446902 -0.0386988931177474 -0.0235442369339851 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_90991366_90991378 ENSMUST00000161637.7 5 chr17:90704367-91087954 5 12 GTAAAAGTAAAG 1 69.9553048272 5.00974993408 8.93030950685e-05 chr17_-_90991366_90991378|69.9553048272|5.00974993408 8.85001470923852e-05 IN ENSMUST00000161637 Annotated NA Neuro-Muscular NM4 16 0.00904498303267846 -0.0423108669324567 -0.0114963717337883 TRUE FALSE FALSE FALSE FALSE FALSE chr17_-_90992114_90992144 ENSMUST00000161637.7 43 chr17:90704367-91087954 43 30 GTCTGGCACACCTGATGATGGGCGACCAAG 1 85.3937510727 5.92549999321 0 chr17_-_90992114_90992144|85.3937510727|5.92549999321 0 IN ENSMUST00000161637 Annotated NA Other O1 4 0.00898358836465887 0.00493028770230715 -0.0798683381150909 TRUE TRUE TRUE FALSE FALSE FALSE chr17_-_90995460_90995478 ENSMUST00000161637.7 6 chr17:90704367-91087954 6 18 AAGACAACAATGTGGAAG 1 82.8774098393 4.15540908683 2.18031457333e-08 chr17_-_90995460_90995478|82.8774098393|4.15540908683 6.11406159034544e-09 IN ENSMUST00000161637 Annotated NA Other O1 4 0.0150792968143582 -0.0304058256638579 -0.0616468804859273 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_21074921_21074940 ENSMUST00000082235.4 0 chr18:21072436+21075650 0 19 CCAGCTCCGGAAAAGTTTG 1 85.3470364326 1.45643479766 1.16087902624e-08 chr18_+_21074921_21074940|85.3470364326|1.45643479766 2.30823771207866e-09 IN ENSMUST00000082235 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr18_+_22406970_22406973 ENSMUST00000120223.7 0 chr18:22392852+22409920,chr18:22392852+22409917 0 3 AAA 5 79.1424483367 2.89428576401 1 chr18_+_22406970_22406973|79.1424483367|2.89428576401 0.906124633076403 RESCUED ENSMUST00000120223 Annotated NA Included I1 1 9.01436373086686e-07 -5.98894704898147e-06 -2.42452559885585e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_23600402_23600411 ENSMUST00000115832.3 5210 chr18:23597558+23602590 5210 9 TGATACTTG 1 76.1490860624 1.94792302984 7.4786131967e-05 chr18_+_23600402_23600411|76.1490860624|1.94792302984 5.88792043542119e-05 IN ENSMUST00000115832 Missing in GENCODE NA Neuronal N1 18 0.0587920770747743 0.0370492039127691 -0.00878209488105694 TRUE TRUE TRUE 12.5 1 12.5 1 TRUE FALSE TRUE chr18_+_23633217_23633238 ENSMUST00000115832.3 34 chr18:23631428+23643146 34 21 GAAGAAGAACTGAAGCAGGGA 1 78.7488783566 4.46072005272 1.03854702616e-11 chr18_+_23633217_23633238|78.7488783566|4.46072005272 5.86830584126119e-12 IN ENSMUST00000115832 Annotated NA Excluded E3 2 0.00442503252190101 -0.051835386775944 0.00813299698677549 TRUE FALSE FALSE TRUE TRUE FALSE chr18_+_24471061_24471084 ENSMUST00000097646.3 0 chr18:24470980+24472949 0 23 ATGGGCCTACAGTTCGACACACG 1 85.9464201377 1.32903702578 2.75974798569e-11 chr18_+_24471061_24471084|85.9464201377|1.32903702578 5.147660075977e-12 IN ENSMUST00000097646 Annotated NA Included I1 1 1.62698445672641e-26 2.65181806284232e-25 -1.41925226654634e-26 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_24695675_24695700 ENSMUST00000068006.7 11 chr18:24692623+24695873 11 25 GAGGGGCCATGGCTGTATCTAACAG 1 78.8507321544 -0.217724141581 0 chr18_+_24695675_24695700|78.8507321544|-0.217724141581 0 IN ENSMUST00000068006 Novel NA Excluded E2 3 0.00996546264952105 -0.00780712019854313 0.0292893172744703 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_25124367_25124391 ENSMUST00000037097.7 229 chr18:25120311+25125742 229 24 ACCGATGACGAGGATGAAGCTGAG 1 77.9939172912 3.53539286923 0 chr18_+_25124367_25124391|77.9939172912|3.53539286923 0 IN ENSMUST00000037097 Missing in GENCODE NA Muscular M1 22 -0.00942543995684823 -0.096185414749722 -0.0148331922782016 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_32423274_32423286 ENSMUST00000025239.7 3 chr18:32421960+32424819 3 12 AAAGAAGAACAG 1 71.3444870493 3.17625002936 6.61937300861e-07 chr18_+_32423274_32423286|71.3444870493|3.17625002936 6.47887364868538e-07 IN ENSMUST00000025239 Missing in GENCODE NA Excluded E2 3 -0.00131805710794226 -0.00847288367754005 0.00655809153829088 TRUE FALSE FALSE TRUE FALSE FALSE chr18_+_32429699_32429723 ENSMUST00000091967.11 36 chr18:32426352+32431670 36 24 TCAATCCCATGGGACCTCTGGGAG 1 80.1987930636 2.8898572053 0 chr18_+_32429699_32429723|80.1987930636|2.8898572053 0 IN ENSMUST00000091967 Annotated NA Neuronal N1 18 0.0766895357429053 0.0287042952589108 0.0254712247072236 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr18_+_32839431_32839459 ENSMUST00000166214.7 0 chr18:32837558+32841042 0 28 GTTCAGAAACTTAGTCTGGTTGCAGTAA 1 81.6518842279 2.70190622914 0 chr18_+_32839431_32839459|81.6518842279|2.70190622914 0 IN ENSMUST00000166214 Annotated NA Included I1 1 7.7470011560575e-119 1.4480485616935e-119 1.51997771501274e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_35609314_35609328 ENSMUST00000115736.7 13 chr18:35600117+35610870 13 14 CCTAATTTTTATAG 1 70.8128102247 0.13116666509 1.56214797764e-07 chr18_+_35609314_35609328|70.8128102247|0.13116666509 1.53807194425148e-07 IN ENSMUST00000115736 Novel NA Excluded E1 6 0.000946725313536826 -9.71150566220035e-05 0.00186698077529055 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_35988998_35989001 ENSMUST00000115716.8 309 chr18:35988238+36002923 309 3 GTG 1 83.9175615386 3.21514282908 0.591760539786 chr18_+_35988998_35989001|83.9175615386|3.21514282908 0.141560447518567 RESCUED ENSMUST00000115716 Novel NA Other O2 21 0.00755021358410019 -0.0130635782913575 0.00561361737963995 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_36350693_36350702 ENSMUST00000050584.9 1 chr18:36348816+36366514 1 9 GGTTTCTCT 1 69.9990156435 0.164230764951 0.000263492317477 chr18_+_36350693_36350702|69.9990156435|0.164230764951 0.000261055597988169 IN ENSMUST00000050584 Novel NA Excluded E1 6 -8.63563019445518e-05 1.17701702694365e-05 0.000188939234608605 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_36660413_36660418 ENSMUST00000142977.7 160 chr18:36658138+36660996 160 5 CTCAG 1 75.3282825589 1.89855554369 0.0108092488819 chr18_+_36660413_36660418|75.3282825589|1.89855554369 0.00911924728428504 IN ENSMUST00000142977 Novel NA Excluded E2 3 0.00654254954184297 0.00171695174481681 0.0109324783437436 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_36753891_36753910 ENSMUST00000007042.5 0 chr18:36753652+36754552 0 19 CCCATGGATGTTGACAAAG 1 87.3512774866 2.70565220843 3.19050741382e-09 chr18_+_36753891_36753910|87.3512774866|2.70565220843 5.30737009896143e-10 IN ENSMUST00000007042 Annotated NA Included I1 1 1.87563139434485e-139 5.88539539500432e-140 3.83443034140648e-139 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_38924416_38924443 ENSMUST00000148850.7 9 chr18:38676805+38933792,chr18:38899899+38933792 1,8 27 GCCCATGAAGAAGAATCTTGCTGAACG 1 88.6418859484 0.0478387100081 0 chr18_+_38924416_38924443|88.6418859484|0.0478387100081 0 IN ENSMUST00000148850 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr18_+_39357798_39357828 ENSMUST00000155576.7 3 chr18:39357663+39363116 3 30 GCCAGAAGAAGCGGTCCGTGAAGACTCCAG 1 84.4028344634 1.50420587126 0 chr18_+_39357798_39357828|84.4028344634|1.50420587126 0 IN ENSMUST00000155576 Annotated Alt5 Excluded E2 3 -0.00078341389000145 -0.00436819375759421 0.0021299204657811 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_43964442_43964468 ENSMUST00000069245.7 0 chr18:43963360+43966998 0 26 ATGCTGCTGGTGAGAAAGGCAATCAG 1 87.9316024472 1.62563333114 8.0113693457e-13 chr18_+_43964442_43964468|87.9316024472|1.62563333114 1.29007915461443e-13 IN ENSMUST00000069245 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr18_+_44106513_44106539 ENSMUST00000081271.5 0 chr18:44104771+44107689 0 26 ATGCTGTGAGCCAAGGAGGCTTTCAG 1 86.8893446185 0.674699996412 6.41264819023e-13 chr18_+_44106513_44106539|86.8893446185|0.674699996412 1.10134124042816e-13 IN ENSMUST00000081271 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr18_+_45680472_45680481 ENSMUST00000183850.7 646 chr18:45677064+45683070 646 9 AGCTCGGAA 1 67.776703882 4.82730771945 8.92986723363e-05 chr18_+_45680472_45680481|67.776703882|4.82730771945 8.91173334176543e-05 IN ENSMUST00000183850 Missing in GENCODE NA Excluded E3 2 0.000382035890588019 0.00117647972895144 0.0390622700677363 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_49954646_49954671 ENSMUST00000180611.7 4 chr18:49951323+49955816 4 25 CCTCCTAAATGATTGGGATTTACAG 1 81.7513556827 -0.112724138745 0 chr18_+_49954646_49954671|81.7513556827|-0.112724138745 0 IN ENSMUST00000180611 Novel NA Excluded E1 6 0.0008247543632809 0.000372328083994034 -0.000386829274643872 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_50142469_50142491 ENSMUST00000025385.6 0 chr18:50140399+50142592 0 22 ACGTTGTGGTCAACAATGCTGG 1 81.1136473282 4.87157694193 1.23179688671e-10 chr18_+_50142469_50142491|81.1136473282|4.87157694193 4.65967264773326e-11 IN ENSMUST00000025385 Annotated NA Included I1 1 2.27054346400722e-77 -1.21798823219477e-77 -3.87848650984437e-77 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_50158384_50158409 ENSMUST00000025385.6 0 chr18:50155218+50160134 0 25 GTTGGAGCAGGATGGATTGGAAAAT 1 84.2363466624 4.61762064695 4.34052793707e-12 chr18_+_50158384_50158409|84.2363466624|4.61762064695 9.92761428619815e-13 IN ENSMUST00000025385 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_52769033_52769058 ENSMUST00000178011.7 1 chr18:52768458+52837963 1 25 TGGCGGTGACTTTCGTCTGCAGGTG 1 81.1355372631 1.48734482892 0 chr18_+_52769033_52769058|81.1355372631|1.48734482892 0 IN ENSMUST00000178011 Novel Alt5 Excluded E1 6 0.0022082369599204 0.00167477377312201 0.00218904772742007 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_53193746_53193768 ENSMUST00000037850.5 129 chr18:53189772+53194429 129 22 ATTATAAACTCCCTGAGGGCAG 1 81.1859117346 1.4096922906 1.02828856541e-12 chr18_+_53193746_53193768|81.1859117346|1.4096922906 3.84137166520304e-13 IN ENSMUST00000037850 Missing in GENCODE NA Excluded E1 6 -7.59341818252675e-05 -0.000374239315722933 0.000761553397018366 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_53216969_53216981 ENSMUST00000037850.5 4684 chr18:53216524+53218101 4684 12 GAAATTGAAGAG 1 74.0558696738 5.47112509608 3.63448568685e-07 chr18_+_53216969_53216981|74.0558696738|5.47112509608 3.30747374155393e-07 IN ENSMUST00000037850 Novel NA Neuro-Muscular NM3 19 0.0589500356973498 -0.123469830427939 -0.0819999185070242 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr18_+_53948644_53948668 ENSMUST00000069597.6 0 chr18:53948154+53953244 0 24 CTGCCAGAAAGTATTGAATATGTG 1 82.5889736945 4.9795714191 1.79838366421e-11 chr18_+_53948644_53948668|82.5889736945|4.9795714191 5.28532773103052e-12 IN ENSMUST00000069597 Annotated NA Included I1 1 -5.91225525377264e-73 5.17712082429715e-73 1.44378625222561e-72 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_60545356_60545377 ENSMUST00000025505.6 863 chr18:60544146+60545747 863 21 CAACACACTATTCATGTAGTG 1 76.6909482668 5.23099985659 1.39976918945e-12 chr18_+_60545356_60545377|76.6909482668|5.23099985659 1.04283248703041e-12 IN ENSMUST00000025505 Annotated NA Neuronal N2 8 0.0727719531601179 -0.00263833498742128 -0.0765501471865723 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE TRUE FALSE chr18_+_60563765_60563795 ENSMUST00000025506.6 0 chr18:60561304+60564362 0 30 ACCAAAGAAAAATATGGAAAAGAATGCAAA 1 88.3802425315 4.439941195 0 chr18_+_60563765_60563795|88.3802425315|4.439941195 0 IN ENSMUST00000025506 Annotated NA Included I1 1 3.60063484852776e-118 6.73020954633176e-119 7.06452034718125e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_61582035_61582065 ENSMUST00000165721.7 2 chr18:61580451+61587425,chr18:61580487+61587425 1,1 30 GTATTAAAGACGAGAAGTTGGATCCACTGA 1 78.3467457522 1.75973528339 0 chr18_+_61582035_61582065|78.3467457522|1.75973528339 0 IN ENSMUST00000165721 Novel NA Excluded E1 6 -7.85792213595367e-05 4.81121186410979e-05 0.000305521393562858 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_62983373_62983391 ENSMUST00000025474.12 0 chr18:62982703+62984039 0 18 TCTTTTTCATGCTGCCAA 1 81.8032148028 4.93477277564 1.9121216388e-08 chr18_+_62983373_62983391|81.8032148028|4.93477277564 6.41582276195152e-09 IN ENSMUST00000025474 Annotated NA Included I1 1 -6.09879691628374e-84 4.27398980218912e-84 5.55156051318799e-84 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_65451546_65451573 ENSMUST00000224265.1 0 chr18:65449018+65453674,chr18:65449607+65453674 0 27 ATGAATTAAACAATTTGGGGCATCCTG 1 85.364196208 1.78587099018 0 chr18_+_65451546_65451573|85.364196208|1.78587099018 0 IN ENSMUST00000224265 Annotated Alt5 Included I1 1 0.000674446304153744 0.00365576651205788 -0.00402121343286088 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_65453674_65453704 ENSMUST00000224265.1 0 chr18:65451573+65458168,chr18:65451573+65456756 0 30 ATAATAAAGAACAAACTGGCCAGCCTTTGG 1 83.0262544909 1.3908235291 0 chr18_+_65453674_65453704|83.0262544909|1.3908235291 0 IN ENSMUST00000224265 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr18_+_67880486_67880489 ENSMUST00000025425.6 2 chr18:67878660+67880750 2 3 AAG 1 75.8897559352 0.264142856002 0.119389718808 chr18_+_67880486_67880489|75.8897559352|0.264142856002 0.096250350799711 IN ENSMUST00000025425 Novel NA Other O2 21 -0.00285061069253489 -0.00174462288681261 -0.00697102423480315 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_69612672_69612677 ENSMUST00000202772.3 6 chr18:69520026+69633576,chr18:69564684+69633576,chr18:69564684+69651221 1,4,1 5 GTAAG 1 59.5120105135 3.43722224236 0.231079959125 chr18_+_69612672_69612677|59.5120105135|3.43722224236 0.231079569588282 RESCUED ENSMUST00000202772 Novel NA Excluded E1 6 -0.00019988878492859 0.000161684697058395 -0.00128982179031263 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_74218628_74218655 ENSMUST00000025444.6 0 chr18:74218277+74218731 0 27 GAATCGTACAAGTACTTCCCTTCCTCG 1 78.8858458197 1.33003225838 0 chr18_+_74218628_74218655|78.8858458197|1.33003225838 0 IN ENSMUST00000025444 Annotated NA Included I1 1 7.08075796087643e-140 2.22181503368569e-140 1.44754844940222e-139 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_75006209_75006213 ENSMUST00000040284.4 4 chr18:75006114+75008650 4 4 AGAG 1 75.8174915288 -0.195249993121 0.037839991409 chr18_+_75006209_75006213|75.8174915288|-0.195249993121 0.0306987062856773 IN ENSMUST00000040284 Novel NA Excluded E1 6 4.31935834275152e-05 -0.000139929020134416 -0.000198535407235268 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_76945342_76945357 ENSMUST00000026485.13 120 chr18:76944527+76951112,chr18:76944531+76951112 24,96 15 CCCCAAAAAAGCAAG 1 73.7344259933 0.216315793952 2.38724165991e-08 chr18_+_76945342_76945357|73.7344259933|0.216315793952 2.20296532127406e-08 IN ENSMUST00000026485 Annotated NA Excluded E1 6 0.000733850221100093 -0.000191609642360708 0.00109613151678368 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_82554735_82554750 MmuEX0028130 0 chr18:82522137+82572824 0 15 CGGGGCTCTGGCAAG 1 71.3958973221 2.68268419567 4.71871388845e-05 chr18_+_82554735_82554750|71.3958973221|2.68268419567 4.61546995709217e-05 IN MmuEX0028130 Missing in GENCODE Alt5 Excluded E1 6 0.00115822065246951 0.000263969641605705 0.00345697613026119 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_84873139_84873169 ENSMUST00000160180.7 0 chr18:84871633+84876833,chr18:84871633+84877826 0 30 GATGACAGATCAAAGATAGCCAAGCCTTCG 1 88.3274166635 2.54288233028 0 chr18_+_84873139_84873169|88.3274166635|2.54288233028 0 IN ENSMUST00000160180 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr18_+_84876833_84876852 ENSMUST00000025549.13 0 chr18:84873169+84877826,chr18:84871633+84877826 0 19 GAATCTTAAAGGTGTCCAG 1 77.4148007655 1.85960869815 1.6858393681e-08 chr18_+_84876833_84876852|77.4148007655|1.85960869815 1.15270868406014e-08 IN ENSMUST00000025549 Annotated NA Included I1 1 -1.02044734328905e-05 7.28371433959553e-06 -4.55203428923903e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_10581176_10581205 ENSMUST00000127099.7 28 chr18:10577090-10582054,chr18:10577759-10582054 3,25 29 GATATCTGAACTGAGCTTCATTTCATCAG 1 75.5426934349 2.25206058585 0 chr18_-_10581176_10581205|75.5426934349|2.25206058585 0 IN ENSMUST00000127099 Novel NA Excluded E1 6 8.52860073216941e-05 0.000281690666090932 -0.00160452364626591 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_12074617_12074643 ENSMUST00000050228.14 0 chr18:12070131-12113394,chr18:12070131-12083991 0 26 AAAACATCGCTCTCAAAGATCTGTAG 1 85.8134922998 1.48676669051 3.07087688611e-12 chr18_-_12074617_12074643|85.8134922998|1.48676669051 5.80535619576494e-13 IN ENSMUST00000050228 Annotated NA Included I1 1 -4.69366565624673e-81 4.15990356966192e-80 2.18580744639957e-80 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_20855820_20855838 ENSMUST00000225661.1 113 chr18:20855076-20860432 113 18 AACACATGGAAGGGCCTG 1 74.9119594761 2.05404545502 3.03202796204e-10 chr18_-_20855820_20855838|74.9119594761|2.05404545502 2.63247867948735e-10 IN ENSMUST00000225661 Annotated NA Excluded E2 3 0.00693965160370124 0.00331664840321753 0.00199108173689117 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_20855820_20855841 ENSMUST00000225661.1 178 chr18:20855076-20860432 178 21 CAGAACACATGGAAGGGCCTG 1 72.6042286313 2.20260000706 4.73487915542e-12 chr18_-_20855820_20855841|72.6042286313|2.20260000706 4.53004300737803e-12 IN ENSMUST00000225661 Missing in GENCODE NA Excluded E2 3 0.00851127766254725 0.0037544002622162 0.00626941378926996 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_25487239_25487254 ENSMUST00000224553.1 2 chr18:25486965-25496221 2 15 CTCCTCCGCCCGCAG 1 71.3064731403 1.35678949011 3.3604009686e-08 chr18_-_25487239_25487254|71.3064731403|1.35678949011 3.29066272009015e-08 IN ENSMUST00000224553 Novel NA Excluded E3 2 0.00582668285726206 -0.0212173771162974 -0.00112285322177324 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_25535628_25535634 ENSMUST00000025117.13 1 chr18:25505015-25537706 1 6 GGAAAG 1 64.7039646988 -0.130999994278 0.0306863596358 chr18_-_25535628_25535634|64.7039646988|-0.130999994278 0.0306805516766201 IN ENSMUST00000025117 Novel NA Excluded E1 6 -0.00137377808254006 0.00358863861191454 0.00222062540207673 TRUE FALSE TRUE FALSE FALSE FALSE chr18_-_25537054_25537057 ENSMUST00000025117.13 2 chr18:25505015-25537706 2 3 TAG 2 74.3297700732 None 0.863977358848 chr18_-_25537054_25537057|74.3297700732|None,chr18_-_25535550_25535553|67.844825083|-0.80671428889 0.887885667066018 RESCUED ENSMUST00000025117 Novel NA Excluded E2 3 0.000247337113821268 -0.000125548918662755 -0.00265153631047497 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_31212711_31212731 ENSMUST00000082070.12 16 chr18:31153896-31243120 16 20 AAGATGCTTATAAAACCCAG 1 86.4342480391 2.39520833828 3.16902060149e-10 chr18_-_31212711_31212731|86.4342480391|2.39520833828 5.64815971770827e-11 IN ENSMUST00000082070 Novel Alt3 Excluded E2 3 0.000353241135160069 -0.00256830756600365 0.00015041703388707 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_31444702_31444715 ENSMUST00000025110.3 75 chr18:31444265-31447133 75 13 ATATACTAAGAAG 1 68.6419432627 -0.0670588226879 1.65950027498e-07 chr18_-_31444702_31444715|68.6419432627|-0.0670588226879 1.65329351209387e-07 IN ENSMUST00000025110 Novel NA Excluded E1 6 1.16018261098829e-05 -5.31755631788013e-05 -0.00034969017292368 TRUE TRUE TRUE 13.5 -1 14.5 -1 FALSE FALSE FALSE chr18_-_32133632_32133657 ENSMUST00000171765.1 0 chr18:32133513-32134849 0 25 CTGGCCTTCTGGATCAAGTACTTTG 1 81.4501101281 1.36393103641 1.16084919455e-12 chr18_-_32133632_32133657|81.4501101281|1.36393103641 4.14113188185183e-13 IN ENSMUST00000171765 Annotated NA Included I1 1 5.7164646497448e-05 4.87674957271344e-06 0.000197480223293862 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_36027392_36027416 ENSMUST00000115713.7 40 chr18:36024408-36031882,chr18:36024408-36032335 39,1 24 AGCACCTTGGATTTGAATTGAAGG 1 75.420054557 4.98003575632 0 chr18_-_36027392_36027416|75.420054557|4.98003575632 0 IN ENSMUST00000115713 Missing in GENCODE NA FALSE FALSE FALSE FALSE FALSE FALSE chr18_-_36676616_36676622 ENSMUST00000001415.7 0 chr18:36676477-36676864 0 6 TGACAG 1 79.6725714593 2.57469998002 0.0878605864895 chr18_-_36676616_36676622|79.6725714593|2.57469998002 0.0426880767597662 IN ENSMUST00000001415 Annotated NA Included I1 1 -5.14830639212893e-17 2.10433830902909e-16 1.25132191446057e-16 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_37889214_37889223 ENSMUST00000115634.7 0 chr18:37860522-37889697,chr18:37860513-37889697 0 9 CTTCTAAAG 1 87.994130321 2.62684612091 0.105278441032 chr18_-_37889214_37889223|87.994130321|2.62684612091 0.0169101455612106 IN ENSMUST00000115634 Annotated NA Included I1 1 -5.93355850774403e-07 -4.38000255071593e-05 1.67370942463492e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_37906387_37906414 ENSMUST00000115634.7 213 chr18:37905159-37935201 213 27 ACTTTGAAGCGGCTCATGGCAGACGAG 1 87.2726256386 3.32270962961 0 chr18_-_37906387_37906414|87.2726256386|3.32270962961 0 IN ENSMUST00000115634 Annotated NA Neuro-Muscular NM5 7 0.0222033127082848 -0.0201853400015313 -0.0446507336796079 TRUE TRUE TRUE 10.5 1 FALSE FALSE FALSE chr18_-_41934613_41934641 ENSMUST00000070949.4 66 chr18:41932761-41935167 66 28 CACTCTGCTGATTCTGTGTTGGACGGAG 1 79.6726405128 1.30521872989 0 chr18_-_41934613_41934641|79.6726405128|1.30521872989 0 IN ENSMUST00000070949 Novel NA Excluded E2 3 0.00696890988467177 0.00188607815301655 0.0139392078568329 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_42939340_42939358 ENSMUST00000025377.13 46 chr18:42741193-43059161 46 18 GGATCTCTGAGCTCTAAG 1 91.0076907213 0.0963181785562 1.80731375421e-08 chr18_-_42939340_42939358|91.0076907213|0.0963181785562 2.86816048689076e-09 IN ENSMUST00000025377 Novel NA Excluded E1 6 -1.2009788453149e-05 -0.00028534936488303 0.000395841663941585 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_47276585_47276606 ENSMUST00000019791.13 0 chr18:47270773-47279115,chr18:47249584-47279115,chr18:47270794-47279115,chr18:47276469-47279115 0 21 ATTCCTTCGTGGCACTGAATG 1 88.6882207947 4.80736000791 5.95946403337e-10 chr18_-_47276585_47276606|88.6882207947|4.80736000791 9.33456645313413e-11 IN ENSMUST00000019791 Annotated Alt3 Included I2 10 0.00486157893940348 0.00100440263070719 0.0165204760840421 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_58107729_58107757 ENSMUST00000025497.6 97 chr18:58106413-58113246 97 28 AATTGATGTATCAACCAAAAGTGTCAAT 1 79.8523865709 1.13999999687 0 chr18_-_58107729_58107757|79.8523865709|1.13999999687 0 IN ENSMUST00000025497 Missing in GENCODE NA Neuronal N4 13 0.0292893514860268 0.0107873158013485 0.0355880137060073 TRUE TRUE TRUE FALSE FALSE FALSE chr18_-_6056978_6056993 ENSMUST00000182066.7 164 chr18:6052923-6057516,chr18:6052923-6061846 100,64 15 GCCGGCAGTCTGAAG 1 90.3697752066 1.12610530147 1.66401149526e-08 chr18_-_6056978_6056993|90.3697752066|1.12610530147 2.59226951015989e-09 IN ENSMUST00000182066 Annotated NA Excluded E3 2 -0.0118453199599555 0.00607405537436362 0.0229772380724136 TRUE TRUE FALSE 15.5 -1 FALSE FALSE FALSE chr18_-_61805636_61805644 ENSMUST00000049378.14 0 chr18:61805146-61806386 0 8 AGTACAAG 1 87.9642992426 2.79941662913 0.0185623498199 chr18_-_61805636_61805644|87.9642992426|2.79941662913 0.00298565071430279 IN ENSMUST00000049378 Annotated NA Included I1 1 1.27818121338779e-13 -5.05569639668231e-13 -3.31744759628911e-13 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_61808931_61808961 ENSMUST00000049378.14 0 chr18:61808438-61811310 0 30 CCCCTCGTTCACACTACCTGGCTGACAGTG 1 82.76927218 3.11908822501 0 chr18_-_61808931_61808961|82.76927218|3.11908822501 0 IN ENSMUST00000049378 Annotated NA Included I1 1 -2.14754284289465e-15 1.0331543125614e-14 5.84052721704291e-15 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_61820366_61820396 ENSMUST00000049378.14 0 chr18:61819917-61821872 0 30 TCACTGGGAACATTATCTCCTTACTCCCAG 1 80.4911997801 3.54676472922 0 chr18_-_61820366_61820396|80.4911997801|3.54676472922 0 IN ENSMUST00000049378 Annotated NA Included I1 1 -7.86615563664097e-08 4.02616221951055e-07 2.0588234915805e-07 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr18_-_62514305_62514329 ENSMUST00000048688.6 67 chr18:62511114-62514794 67 24 CTAGGGTTAGCAGGAGACAAACAG 1 91.9568645368 0.692357144518 0 chr18_-_62514305_62514329|91.9568645368|0.692357144518 0 IN ENSMUST00000048688 Missing in GENCODE NA Excluded E2 3 -0.000155096509854624 -0.0191114600416909 -0.00307215217530258 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_67495362_67495390 ENSMUST00000045105.12 0 chr18:67495276-67496561 0 28 GCCCGTGTGCTCACAGTGTTGCAAAAAG 1 87.1467757766 4.50087499246 0 chr18_-_67495362_67495390|87.1467757766|4.50087499246 0 IN ENSMUST00000045105 Annotated Alt3 Included I1 1 0.000346324216353505 -0.000767816736887928 0.00090233869501233 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_73675160_73675190 ENSMUST00000025393.13 0 chr18:73662867-73675770 0 30 ATCTCTCAGGATTAACACTGCAGAGTAATG 1 73.9831218935 2.93976466796 0 chr18_-_73675160_73675190|73.9831218935|2.93976466796 0 IN ENSMUST00000025393 Annotated NA Included I1 1 -1.98130606340295e-54 1.04467166975115e-53 5.19917632534132e-54 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_7430394_7430415 MmuEX0029562 0 chr18:7403356-7439568 0 21 ATGAGGAAACAGTTGAATGTG 1 78.4505675725 3.39083999574 8.22797119326e-09 chr18_-_7430394_7430415|78.4505675725|3.39083999574 4.86751206008051e-09 IN MmuEX0029562 Missing in GENCODE NA Neuronal N6 15 0.0123556353270809 0.0105127946454381 -0.00446872180576763 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr18_-_89690003_89690029 ENSMUST00000097495.3 57 chr18:89598791-89769070 57 26 CCTCTCTGCATCCTGAACATCTTGAG 1 86.2136568818 0.0840666731199 0 chr18_-_89690003_89690029|86.2136568818|0.0840666731199 0 IN ENSMUST00000097495 Novel NA Excluded E2 3 -1.50405517576496e-05 0.00222119732662871 -0.00411175137004889 TRUE FALSE FALSE FALSE FALSE FALSE chr18_-_9412666_9412682 ENSMUST00000053917.4 119 chr18:9386809-9449517 119 16 GATGCTGGGATTAGAG 1 79.5853224603 0.19149999693 5.70144021994e-08 chr18_-_9412666_9412682|79.5853224603|0.19149999693 2.81122398693157e-08 IN ENSMUST00000053917 Novel NA Excluded E1 6 0.00366501761408698 0.00137251741789489 0.00398704825845266 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_10422394_10422411 ENSMUST00000225861.1 1 chr19:10421888+10435549 1 17 CCCGCTCTTCCTCCGTC 1 62.0950228261 1.68523811443 3.10137693305e-09 chr19_+_10422394_10422411|62.0950228261|1.68523811443 3.10131575975703e-09 IN ENSMUST00000225861 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr19_+_17195922_17195931 ENSMUST00000087689.4 336 chr19:17193429+17199112 336 9 GAGACTCAG 1 83.5785437621 3.23284615462 8.44860154542e-05 chr19_+_17195922_17195931|83.5785437621|3.23284615462 2.12431493057386e-05 IN ENSMUST00000087689 Missing in GENCODE NA Muscular M1 22 0.000262236489044663 -0.0939541182646293 -0.0237726344737503 TRUE FALSE TRUE FALSE FALSE FALSE chr19_+_22900133_22900163 ENSMUST00000074770.11 411 chr19:22897810+22901045 411 30 CCCAAAGCCTTGAAACTGCTGGGAATGGAG 1 84.3560162432 4.96932344621 0 chr19_+_22900133_22900163|84.3560162432|4.96932344621 0 IN ENSMUST00000074770 Annotated NA Included I2 10 0.00406240384312513 -0.000328274544774266 -0.0245357219566625 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_32646328_32646343 ENSMUST00000025833.6 0 chr19:32641411+32651895 0 15 GCGTGGTTCCCCGTG 1 82.5168819217 1.47773684953 9.74624325301e-06 chr19_+_32646328_32646343|82.5168819217|1.47773684953 2.89864115110561e-06 IN ENSMUST00000025833 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr19_+_3286151_3286169 ENSMUST00000025745.9 2 chr19:3285395+3286874 2 18 GGCACCACCACAGGAGAG 1 75.8475642942 0.258454540914 8.28208612802e-11 chr19_+_3286151_3286169|75.8475642942|0.258454540914 6.70159483462385e-11 IN ENSMUST00000025745 Novel NA Excluded E1 6 -1.73846207071996e-05 -5.26759972279866e-05 7.71088511206197e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_34320560_34320585 ENSMUST00000025691.11 0 chr19:34319389+34326992 0 25 GAAACCATACCAATGAATGCCTCAA 1 92.0212223264 0.203068968808 6.72706335081e-12 chr19_+_34320560_34320585|92.0212223264|0.203068968808 1.12498899085267e-12 IN ENSMUST00000025691 Annotated NA Included I1 1 5.85229636504295e-12 3.0104866991722e-12 7.65532422688503e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_36100808_36100838 ENSMUST00000025714.7 0 chr19:36100288+36101233 0 30 AATGTAATTCTGTCCAGTGCTGCAGAAAGG 1 85.9222859666 2.99758824268 0 chr19_+_36100808_36100838|85.9222859666|2.99758824268 0 IN ENSMUST00000025714 Annotated NA Included I1 1 4.49188747524693e-140 1.40947384125707e-140 9.18295016664871e-140 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_3804813_3804833 ENSMUST00000052699.12 0 chr19:3804561+3804916 0 20 ATTGCAGACCTAACTGTAAG 1 84.4651897037 4.7982500152 3.01042746287e-10 chr19_+_3804813_3804833|84.4651897037|4.7982500152 6.67514932217728e-11 IN ENSMUST00000052699 Annotated Alt5 Included I2 10 -0.000654974079340909 -0.00179283326658649 -0.000148898523035071 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_3874768_3874798 ENSMUST00000128694.7 14 chr19:3871062+3875734 14 30 GTGTTTTTGATAAAGCTGTGGAATGGCAAG 1 82.3676574762 2.32267646053 0 chr19_+_3874768_3874798|82.3676574762|2.32267646053 0 IN ENSMUST00000128694 Missing in GENCODE Alt5 Other O1 4 0.00559263247971636 0.0191088434311758 -0.0370952361684075 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_4131059_4131075 ENSMUST00000169055.7 29 chr19:4127836+4131228 29 16 GTGGCCCCCTCTCCAG 1 77.950793429 1.84340001158 3.06681613438e-09 chr19_+_4131059_4131075|77.950793429|1.84340001158 1.95144111980738e-09 IN ENSMUST00000169055 Novel Alt5 Excluded E2 3 -0.00266662862537657 0.00155518375756351 -0.00121007790336849 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_41938807_41938836 ENSMUST00000026154.8 0 chr19:41938452+41939599,chr19:41938452+41939687 0 29 GTGTGTGCTGAAGATGGATCATCACTGCC 1 71.5595884596 4.49603028821 0 chr19_+_41938807_41938836|71.5595884596|4.49603028821 0 IN ENSMUST00000026154 Annotated Alt5 Other O2 21 -0.00555206386578453 -0.00225671077840845 0.000931451679242584 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_42185619_42185640 ENSMUST00000099443.10 1 chr19:42184189+42185804 1 21 GAGACCCACCTGGTGGTGCTG 1 76.1933493061 2.97499999285 1.41220368732e-12 chr19_+_42185619_42185640|76.1933493061|2.97499999285 1.10711440015621e-12 IN ENSMUST00000099443 Annotated Alt5 Neuronal N1 18 0.0660306154655082 0.0369785849227354 -0.0225083358347772 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr19_+_43764959_43764987 ENSMUST00000026199.13 0 chr19:43763006+43767200 0 28 GCAAAAGGCAGGATTGTGGTAATGCCAG 1 83.0800816336 3.55662504351 0 chr19_+_43764959_43764987|83.0800816336|3.55662504351 0 IN ENSMUST00000026199 Annotated Alt5 Included I2 10 -0.000654872585435852 -0.000954571974088744 0.00301968188798919 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_44568828_44568836 ENSMUST00000040455.4 85 chr19:44568480+44569403 85 8 GGAGATAG 1 84.1328701092 -0.0119999967283 5.42983587994e-05 chr19_+_44568828_44568836|84.1328701092|-0.0119999967283 1.2598479608994e-05 IN ENSMUST00000040455 Novel NA Excluded E1 6 0.00105613089247982 0.000277858194362685 0.00151349626836491 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_44942920_44942939 ENSMUST00000096053.3 74 chr19:44942426+44943448 74 19 ACCACTGCTGTAAATGAAG 1 73.489079184 2.07008695343 1.41966438605e-11 chr19_+_44942920_44942939|73.489079184|2.07008695343 1.32250876916373e-11 IN ENSMUST00000096053 Missing in GENCODE NA Neuronal N4 13 0.0178452861311183 0.00416084798169198 0.0334485702677804 TRUE FALSE TRUE FALSE FALSE FALSE chr19_+_45050231_45050240 ENSMUST00000111954.10 3 chr19:45049914+45050649 3 9 ACTCCGACT 1 57.4934754011 2.8641538299 1.07585805882e-05 chr19_+_45050231_45050240|57.4934754011|2.8641538299 1.07585783128972e-05 IN ENSMUST00000111954 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr19_+_45053699_45053719 ENSMUST00000084493.6 0 chr19:45052183+45054301 0 20 GTGGGACTGGTAGGCTTCTG 1 80.9504395647 3.45949999926 1.90448190551e-09 chr19_+_45053699_45053719|80.9504395647|3.45949999926 7.4133887917327e-10 IN ENSMUST00000084493 Annotated Alt5 Excluded E2 3 0.000953711032607398 -0.000170788841734296 0.00090203238322399 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_45561319_45561342 ENSMUST00000047057.7 8 chr19:45560707+45564910 8 23 ATTTATTTATTTTTTTATTATAT 1 85.9141376628 -0.0238888892863 0 chr19_+_45561319_45561342|85.9141376628|-0.0238888892863 0 IN ENSMUST00000047057 Novel NA Excluded E1 6 3.94447071811276e-05 -6.49330402221491e-05 5.46173889790859e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_46700774_46700795 ENSMUST00000074912.7 0 chr19:46699781+46701514 0 21 GCAAGAAGCTATTCAGAAGAA 1 80.8535230866 4.25179996967 3.88354237657e-10 chr19_+_46700774_46700795|80.8535230866|4.25179996967 1.537621141523e-10 IN ENSMUST00000074912 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_53243810_53243824 ENSMUST00000111741.8 73 chr19:53242627+53244309,chr19:53242627+53244997 1,72 14 CCTGACAATGCCAG 1 77.7499170237 2.25355556276 2.42143866069e-08 chr19_+_53243810_53243824|77.7499170237|2.25355556276 1.58413961948156e-08 IN ENSMUST00000111741 Novel NA Excluded E1 6 0.000328914160658135 -8.94906253253463e-05 0.00128019058195419 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_53346450_53346480 ENSMUST00000003870.13 0 chr19:53331483+53369541 0 30 ATCTACACACAATGAGTTGGAAAAGAACCG 1 86.9908186225 3.17691172572 0 chr19_+_53346450_53346480|86.9908186225|3.17691172572 0 IN ENSMUST00000003870 Annotated NA Included I1 1 1.3673399877085e-123 -4.67837737744407e-124 -1.42761840904938e-124 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_5474755_5474774 ENSMUST00000167304.7 1 chr19:5474323+5475060 1 19 GCACTGCTGGAGTCGACGC 1 73.9443138702 0.56252174047 1.01465502667e-11 chr19_+_5474755_5474774|73.9443138702|0.56252174047 9.28035426284168e-12 IN ENSMUST00000167304 Novel Alt5 Excluded E3 2 -0.00334954048787969 5.92039272366946e-05 -0.0033081258714419 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_5475151_5475178 ENSMUST00000167855.7 0 chr19:5474774+5475407 0 27 GATCCCGAGGAGCCGGACAGCTACACG 1 74.4222326056 2.25277421167 0 chr19_+_5475151_5475178|74.4222326056|2.25277421167 0 IN ENSMUST00000167855 Annotated Alt5 Excluded E3 2 0.000233415324961956 0.000279495145274563 -0.00215569174254552 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_55387188_55387209 ENSMUST00000225529.1 1233 chr19:55381019+55391783 1233 21 TTGATAAAATTACGTGAAGAG 1 82.0928248557 5.89776003838 9.53814804916e-12 chr19_+_55387188_55387209|82.0928248557|5.89776003838 3.04578584575665e-12 IN ENSMUST00000225529 Annotated NA Neuronal N1 18 0.0705574370163961 0.0249308763164143 0.0178820572331761 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr19_+_55927726_55927754 ENSMUST00000041717.13 55 chr19:55923944+55931433,chr19:55924580+55931433,chr19:55926049+55931433,chr19:55926756+55931433 1,1,35,18 28 CAGTCTTTGAATTTGGAATATTATGATG 1 75.974519011 5.64937508106 0 chr19_+_55927726_55927754|75.974519011|5.64937508106 0 IN ENSMUST00000041717 Novel NA Neuronal N4 13 0.0235399410441286 0.0109917240528914 0.0108840042343761 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_55927729_55927754 ENSMUST00000111657.9 595 chr19:55923944+55931433,chr19:55924580+55931433,chr19:55926049+55931433,chr19:55926756+55931433 24,7,436,128 25 TCTTTGAATTTGGAATATTATGATG 1 74.8343434295 5.55644836097 0 chr19_+_55927729_55927754|74.8343434295|5.55644836097 0 IN ENSMUST00000111657 Annotated NA Neuronal N3 17 0.0483142285896291 0.0279993201035677 -0.00663327181306154 TRUE TRUE TRUE 12.5 1 FALSE FALSE FALSE chr19_+_5638431_5638458 ENSMUST00000025867.5 0 chr19:5637841+5638550 0 27 ATCTGTTTCCCCTCATCTTTCCCTCAG 1 93.1659554337 0.826516115077 0 chr19_+_5638431_5638458|93.1659554337|0.826516115077 0 IN ENSMUST00000025867 Annotated NA Included I1 1 4.57481008944699e-115 1.67428998488483e-116 1.3163032817429e-114 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_5748574_5748591 ENSMUST00000081496.5 0 chr19:5747856+5748665 0 17 GAGTGACCATGGATCCA 1 80.7181438523 1.56523809688 4.58676358006e-08 chr19_+_5748574_5748591|80.7181438523|1.56523809688 1.8596702067164e-08 IN ENSMUST00000081496 Annotated NA Included I1 1 1.06779309573703e-26 5.77810792441701e-27 -4.21435275506291e-26 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_6386106_6386127 ENSMUST00000113483.1 0 chr19:6384721+6386373 0 21 AAGATCTGTGGGGGCTGGCAG 1 82.3327164446 4.12336000443 3.69936969946e-10 chr19_+_6386106_6386127|82.3327164446|4.12336000443 1.13447584659809e-10 IN ENSMUST00000113483 Annotated Alt5 Excluded E3 2 -0.00283809389762636 -0.00243350800327386 -0.000928103783962938 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_6402471_6402485 ENSMUST00000113467.1 14 chr19:6401863+6403030 14 14 ATGACTCCGGAAAG 1 76.3223410988 2.82583332822 1.67201504864e-08 chr19_+_6402471_6402485|76.3223410988|2.82583332822 1.29442584428929e-08 IN ENSMUST00000113467 Novel Alt3 Excluded E1 6 0.000136342765069122 -0.000576857888327967 0.00237239654966976 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_6443630_6443648 ENSMUST00000113462.7 0 chr19:6428778+6450527,chr19:6428778+6448254,chr19:6428778+6454978 0 18 AGGAACACCCCATGGAAG 1 78.7555765386 2.35677273842 2.83092918774e-07 chr19_+_6443630_6443648|78.7555765386|2.35677273842 1.59795175869171e-07 IN ENSMUST00000113462 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr19_+_6448254_6448284 ENSMUST00000113462.7 0 chr19:6428778+6450527,chr19:6428778+6454978,chr19:6446421+6450527,chr19:6445575+6450530,chr19:6443648+6454978,chr19:6443648+6450527 0 30 GTCCGGCTCACCTGACGTTAAACAGCGAAG 1 82.7699281875 4.29605881957 0 chr19_+_6448254_6448284|82.7699281875|4.29605881957 0 IN ENSMUST00000113462 Annotated NA Included I1 1 -0.000408496473076456 -0.00288831511812145 0.00516412228835686 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_6463823_6463847 ENSMUST00000113462.7 0 chr19:6455280+6472257 0 24 CACGCAGGGATTGGACACGCTATG 1 71.804313788 5.77492854851 6.0214944142e-11 chr19_+_6463823_6463847|71.804313788|5.77492854851 5.85445025791387e-11 IN ENSMUST00000113462 Annotated Alt3 Other O2 21 -0.000911005281139348 0.000116615670661638 0.0201644827044839 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_6463830_6463847 ENSMUST00000077182.12 4 chr19:6455280+6472257 4 17 GGATTGGACACGCTATG 1 69.2829661815 5.95633331367 3.85534804082e-09 chr19_+_6463830_6463847|69.2829661815|5.95633331367 3.83305365225795e-09 IN ENSMUST00000077182 Novel NA Excluded E3 2 -0.000490339256562022 0.00134382968380201 -0.0015453394857113 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_6488783_6488810 ENSMUST00000113461.7 359 chr19:6481875+6490066 359 27 ACTGCCTGCGCGTCGGCTGCGCACCCA 1 76.0018641662 2.50741932277 0 chr19_+_6488783_6488810|76.0018641662|2.50741932277 0 IN ENSMUST00000113461 Annotated NA Included I3 5 0.00512124542868352 0.0143211751142972 -0.0278426048686876 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_7185575_7185605 ENSMUST00000040261.5 0 chr19:7066203+7196413 0 30 CCAACAGCTCCCTGCTTGGAGGCGGAGGGG 1 83.8985373208 1.9312353476 0 chr19_+_7185575_7185605|83.8985373208|1.9312353476 0 IN ENSMUST00000040261 Annotated NA Included I1 1 1.2524989426132e-54 -2.62524701624325e-54 1.01615943927134e-53 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_8737847_8737862 ENSMUST00000210512.1 0 chr19:8737729+8738152 0 15 CTCTTGGAACTGAAG 1 83.0801161603 1.69615789483 3.76254249534e-07 chr19_+_8737847_8737862|83.0801161603|1.69615789483 1.02155178205443e-07 IN ENSMUST00000210512 Annotated Alt3 Excluded E1 6 -0.000422864139845569 0.000396924790961927 0.000209415920127674 TRUE FALSE FALSE FALSE FALSE FALSE chr19_+_8899370_8899394 ENSMUST00000096246.3 8 chr19:8898159+8902263 8 24 GACCTGCATTCACCTCACTATATG 1 72.5566853501 -0.107642858722 0 chr19_+_8899370_8899394|72.5566853501|-0.107642858722 0 IN ENSMUST00000096246 Novel NA Excluded E2 3 0.00115631314419001 0.00150192764623198 -0.000188631168532907 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_10863701_10863704 ENSMUST00000025645.13 1 chr19:10863660-10863954 1 3 TGG 1 67.0486045978 0.25185713172 0.0173650828823 chr19_-_10863701_10863704|67.0486045978|0.25185713172 0.0173444032923593 IN ENSMUST00000025645 Novel NA Excluded E3 2 -0.00200731950574346 0.00206346583522355 0.00320212411757879 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_11784209_11784232 ENSMUST00000069285.5 8 chr19:11783136-11785389 8 23 GATCTGGTTTGAGTCAAGTGATG 1 79.0744307158 1.21281480653 0 chr19_-_11784209_11784232|79.0744307158|1.21281480653 0 IN ENSMUST00000069285 Novel NA Neuronal N4 13 0.0271936382442891 0.00658048232254601 0.0396598683408582 TRUE TRUE FALSE 15.5 1 FALSE FALSE FALSE chr19_-_11789556_11789585 ENSMUST00000211047.1 0 chr19:11788236-11790047 0 29 GGCCAACAACGTCCGGAACAAGCTGAAGA 1 64.0003448528 3.33287878154 0 chr19_-_11789556_11789585|64.0003448528|3.33287878154 0 IN ENSMUST00000211047 Annotated Alt5 Excluded E2 3 0.00101381249680547 -0.00430721158415766 0.000256484107594153 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_12790259_12790288 ENSMUST00000142247.7 0 chr19:12779099-12794983 0 29 GTGTATAGAAAAACTAACAACTGATAAAG 1 95.9400040389 1.6453939008 0 chr19_-_12790259_12790288|95.9400040389|1.6453939008 0 IN ENSMUST00000142247 Annotated NA Included I1 1 -7.93671510223458e-87 -1.38026171846383e-85 -2.07158566765087e-86 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_14516358_14516375 ENSMUST00000052011.13 0 chr19:14491799-14517771,chr19:14468271-14517771 0 17 ACAGAGACTCCATCAAG 1 83.3946199719 4.12766668626 1.5105458675e-06 chr19_-_14516358_14516375|83.3946199719|4.12766668626 3.90544262929282e-07 IN ENSMUST00000052011 Annotated NA Included I1 1 2.02714310125062e-85 2.75667312787233e-84 -1.3065092251159e-84 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_21396032_21396060 ENSMUST00000087600.9 0 chr19:21395258-21397506 0 28 GCTGTTATCCAGAAGTTTCTTTATCTAG 1 87.8836103187 2.5578749897 0 chr19_-_21396032_21396060|87.8836103187|2.5578749897 0 IN ENSMUST00000087600 Annotated NA Included I1 1 2.42977748136253e-07 3.48961932118847e-06 -7.61585238149607e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_21419373_21419401 ENSMUST00000087600.9 0 chr19:21417107-21422997 0 28 ATTTGTGTCAGAAATGCTGCAAAAGAAT 1 86.317375122 2.09915625816 0 chr19_-_21419373_21419401|86.317375122|2.09915625816 0 IN ENSMUST00000087600 Annotated Alt3 Included I2 10 -0.00191707519577232 -0.0010581759584741 -0.000660326054199587 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_3459746_3459764 ENSMUST00000025846.15 1112 chr19:3459480-3464544 1112 18 AGTGTTGAAGTCCTACCG 1 75.8446640504 4.34463633191 2.86604517896e-10 chr19_-_3459746_3459764|75.8446640504|4.34463633191 2.3196955467597e-10 IN ENSMUST00000025846 Annotated NA Neuronal N3 17 0.0500732778709647 0.0223152030850676 0.0187497493073158 TRUE TRUE TRUE 11.5 1 14.5 1 FALSE FALSE FALSE chr19_-_37105790_37105814 ENSMUST00000124158.7 49 chr19:37088587-37126331 49 24 CCAGGAGCTATGGGCGGAGACGAG 1 80.4832241098 3.4318214474 0 chr19_-_37105790_37105814|80.4832241098|3.4318214474 0 IN ENSMUST00000124158 Annotated NA Neuronal N5 14 0.0267644949724845 0.0449791065742953 -0.011316865949507 TRUE TRUE TRUE 11.5 1 14.5 1 FALSE FALSE TRUE chr19_-_37926982_37926994 ENSMUST00000041475.15 0 chr19:37924701-37930954,chr19:37924704-37930985,chr19:37920777-37934765,chr19:37924701-37930985 0 12 CTGTCGGAAAAG 1 80.1218675512 2.01381250838 0.000371506252469 chr19_-_37926982_37926994|80.1218675512|2.01381250838 0.000167129693286028 IN ENSMUST00000041475 Annotated NA Included I1 1 -1.11685847855262e-12 -5.40437061288931e-12 2.8769770104671e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_38223634_38223655 ENSMUST00000067167.5 1 chr19:38221913-38223961 1 21 TTTCAGGTCTTCCTGTACTAG 1 69.5276915099 -0.122759997565 1.79678494305e-12 chr19_-_38223634_38223655|69.5276915099|-0.122759997565 1.78457248978248e-12 IN ENSMUST00000067167 Novel NA Excluded E1 6 0.000275138020242696 0.000182494932808872 0.000562107929288946 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_39852012_39852042 ENSMUST00000168838.1 11 chr19:39851216-39859815 11 30 GAGCTGAAACATCCACTGAAATACTTGGAA 1 82.0123085654 -0.281352939249 0 chr19_-_39852012_39852042|82.0123085654|-0.281352939249 0 IN ENSMUST00000168838 Novel NA Excluded E1 6 7.58871973382791e-05 -0.00067485710666444 0.00116232483205376 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_40369689_40369719 ENSMUST00000224667.1 1212 chr19:40365166-40373475 1212 30 AGCAGCAAAAGCGACTCAGTAGTCTTTCAG 1 87.1389727399 2.88405885605 0 chr19_-_40369689_40369719|87.1389727399|2.88405885605 0 IN ENSMUST00000224667 Annotated NA Non-Neuronal NN1 23 -0.0316929631667172 -0.00248430535840511 0.0355333376268525 TRUE TRUE TRUE 10.5 -1 10.5 -1 TRUE FALSE FALSE chr19_-_40382755_40382782 ENSMUST00000226047.1 164 chr19:40382633-40393387 164 27 GCCTGGAGCCAGAGGACCCTTCAGCAG 1 81.4213839045 2.09396774418 0 chr19_-_40382755_40382782|81.4213839045|2.09396774418 0 IN ENSMUST00000226047 Annotated NA Neuronal N4 13 0.032742485539088 0.012034557494621 0.0275717778786076 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE TRUE chr19_-_40944126_40944154 ENSMUST00000117695.7 0 chr19:40943344-40945486 0 28 GAAGAAGCCAGCTACACCACTTAAGACT 1 85.3818738841 1.21140623273 0 chr19_-_40944126_40944154|85.3818738841|1.21140623273 0 IN ENSMUST00000117695 Annotated NA Included I1 1 -3.58925625058757e-05 -0.000169082391160676 4.30780990345574e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_41250509_41250535 ENSMUST00000025989.8 33 chr19:41248028-41256144 33 26 CTTGATGTCACGCTCCAGAAGAAAAG 1 83.5902828439 -0.0393666611053 0 chr19_-_41250509_41250535|83.5902828439|-0.0393666611053 0 IN ENSMUST00000025989 Novel NA Excluded E1 6 0.000560634316691409 6.76200312480725e-05 0.000783942258265819 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_41638882_41638906 ENSMUST00000169141.7 0 chr19:41638713-41639702 0 24 CCAAAGAGCAGTACTTCATTCCAG 1 91.0892082863 3.36207139865 3.41415784533e-12 chr19_-_41638882_41638906|91.0892082863|3.36207139865 5.43565192856477e-13 IN ENSMUST00000169141 Annotated NA Included I1 1 -6.18253512423081e-08 3.41512145869996e-07 1.67179520434448e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_4175004_4175031 ENSMUST00000167055.1 0 chr19:4173220-4175393 0 27 TCTCTCTGCCTCTCTACCTCCAAGATG 1 80.627821976 0.953483861961 0 chr19_-_4175004_4175031|80.627821976|0.953483861961 0 IN ENSMUST00000167055 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr19_-_41926531_41926560 ENSMUST00000112123.2 1 chr19:41925239-41931355 1 29 AAGATATCCGAGCAACTGAAAAAGACAAG 1 77.4419042337 4.20778795219 0 chr19_-_41926531_41926560|77.4419042337|4.20778795219 0 IN ENSMUST00000112123 Novel Alt5 Excluded E3 2 0.000427001365497132 -0.000894805347192553 -0.00313327071046622 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_42749383_42749403 ENSMUST00000076505.3 0 chr19:42747590-42752336 0 20 GACACAATGGGCTGGTGGCT 1 81.1807672546 3.8605000029 4.29463398177e-09 chr19_-_42749383_42749403|81.1807672546|3.8605000029 1.60560698070356e-09 IN ENSMUST00000076505 Annotated NA Included I1 1 3.45252216572359e-15 2.92693590492677e-15 -7.51201841036761e-15 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_43869588_43869606 ENSMUST00000212396.1 752 chr19:43869004-43870161 752 18 GAGCCTGTACCACGAATG 1 85.4653249449 2.97113633562 6.4517280407e-11 chr19_-_43869588_43869606|85.4653249449|2.97113633562 1.2658984971381e-11 IN ENSMUST00000212396 Annotated NA Included I1 1 -5.81181588276299e-50 7.92956171979609e-49 5.13168293902357e-49 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_45794570_45794587 ENSMUST00000162661.8 1 chr19:45794303-45794739 1 17 GACTTTGTGGCTGGTTT 1 78.5975823085 3.83733331128 9.43600753089e-11 chr19_-_45794570_45794587|78.5975823085|3.83733331128 5.45848921618131e-11 IN ENSMUST00000162661 Novel Alt3 Excluded E1 6 6.34174245307724e-05 -0.000436407691396189 0.000440435444331084 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_45796278_45796298 ENSMUST00000079431.9 1 chr19:45795704-45797090 1 20 ACCCCGCCCGCTGGACCCAG 1 78.3024825085 1.54762500214 4.83879603053e-12 chr19_-_45796278_45796298|78.3024825085|1.54762500214 2.92665891521438e-12 IN ENSMUST00000079431 Novel Alt5 Excluded E1 6 -0.00106964393103861 0.000737700379986087 0.00734543279028548 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_46034263_46034275 ENSMUST00000152946.7 81 chr19:46034180-46034388 81 12 GCTGAGAACAGG 1 71.1868380863 0.276249992756 4.47034825823e-08 chr19_-_46034263_46034275|71.1868380863|0.276249992756 4.38395352242438e-08 IN ENSMUST00000152946 Novel NA Excluded E1 6 3.49756611667672e-06 -5.53772874226335e-05 -0.000212065977251213 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_46326166_46326182 ENSMUST00000224447.1 6 chr19:46325013-46327083 6 16 CTCCTGACGAGCAGCG 1 83.4377438341 1.05635000514 1.86446413863e-09 chr19_-_46326166_46326182|83.4377438341|1.05635000514 4.78884598642537e-10 IN ENSMUST00000224447 Annotated Alt5 Excluded E2 3 -0.00142431627306149 0.00750655716397697 -3.75411475168797e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_46337564_46337583 ENSMUST00000051234.8 84 chr19:46332701-46338312,chr19:46332701-46338568 73,11 19 GGCCTTCATTTCCTTTCAG 1 79.5209991975 0.471217396467 7.94102561485e-11 chr19_-_46337564_46337583|79.5209991975|0.471217396467 3.95805610509115e-11 IN ENSMUST00000051234 Novel NA Excluded E1 6 7.93434525611324e-05 -4.13295416687232e-05 -4.00910724459722e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_47042121_47042139 MmuEX0033966 0 chr19:47040142-47042765,chr19:47040142-47045809 0 18 CATTCACTGAGATTTGAG 1 82.2971539321 0.370363636789 3.78495308428e-08 chr19_-_47042121_47042139|82.2971539321|0.370363636789 1.16766049051975e-08 IN MmuEX0033966 Missing in GENCODE NA Included I1 1 1.2234410819274e-05 -5.79411055547435e-05 -2.74514624361773e-05 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr19_-_47042765_47042793 ENSMUST00000026032.5 0 chr19:47040142-47045809 0 28 TGCTAATGAAGACACCGGACATTTTAAG 1 81.8157134722 2.45306250453 0 chr19_-_47042765_47042793|81.8157134722|2.45306250453 0 IN ENSMUST00000026032 Annotated NA Included I1 1 2.44313342979169e-45 7.55163344570861e-45 6.01294399652594e-46 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_47343439_47343468 ENSMUST00000081619.8 0 chr19:47320320-47364622 0 29 AGACTATGGCAGTTCCAAGAGGAAATCAG 1 91.7792591348 1.92615149148 0 chr19_-_47343439_47343468|91.7792591348|1.92615149148 0 IN ENSMUST00000081619 Annotated NA Included I1 1 4.1911893420666e-07 -4.57000570416624e-07 -8.08314713887265e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_47659990_47660017 ENSMUST00000026045.13 0 chr19:47659260-47660782 0 27 GTCTCACAGGACCCCAGGGACCTCAGG 1 89.4819898835 2.8261612992 0 chr19_-_47659990_47660017|89.4819898835|2.8261612992 0 IN ENSMUST00000026045 Annotated NA Included I1 1 1.27475826641156e-05 0.000250057391888413 -0.000147299437539541 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_47666645_47666672 ENSMUST00000026045.13 0 chr19:47666543-47667693 0 27 GAGACCGAGGCCTTCCTGGGACCCCAG 1 88.0498909595 1.97932258275 0 chr19_-_47666645_47666672|88.0498909595|1.97932258275 0 IN ENSMUST00000026045 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr19_-_47668083_47668113 ENSMUST00000026045.13 0 chr19:47667720-47668494 0 30 GGAATCTCAGAGGAAGTCCTGGTCCAAAAG 1 80.0998395095 1.99220587452 0 chr19_-_47668083_47668113|80.0998395095|1.99220587452 0 IN ENSMUST00000026045 Annotated NA Included I1 1 -1.34371426682393e-05 -0.000114696895664474 1.82796425475678e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_56383426_56383429 ENSMUST00000167239.7 1 chr19:56382364-56384058 1 3 GAG 1 61.8687692881 -0.212571429887 0.0978454670242 chr19_-_56383426_56383429|61.8687692881|-0.212571429887 0.0978438968437894 IN ENSMUST00000167239 Novel NA Other O1 4 -0.00729665826134101 0.00381056005864655 0.0459424256645238 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_57041414_57041422 ENSMUST00000079360.11 0 chr19:57040561-57041914 0 8 ACTACCAG 1 87.687325966 2.23666670918 0.0202530386885 chr19_-_57041414_57041422|87.687325966|2.23666670918 0.00330333254568915 IN ENSMUST00000079360 Annotated Alt3 Included I1 1 0.000583613214009678 -0.000185262441886327 -0.000301630476028198 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_58392572_58392587 ENSMUST00000129100.7 708 chr19:58300578-58451968 708 15 ATGTTTTCCAGCAAG 1 89.9916386664 2.50815793244 5.50684338352e-07 chr19_-_58392572_58392587|89.9916386664|2.50815793244 8.53047847915178e-08 IN ENSMUST00000129100 Annotated NA Neuronal N5 14 0.0357655405884055 0.0238061834741758 -0.0384726163228775 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr19_-_5996778_5996790 ENSMUST00000025891.8 0 chr19:5994887-5997690 0 12 GTCCCTCGGGAG 1 88.4108677243 1.82337499689 0.000166104313485 chr19_-_5996778_5996790|88.4108677243|1.82337499689 2.62385781621965e-05 IN ENSMUST00000025891 Annotated NA Included I1 1 -4.24032016274876e-34 -7.25127303319449e-34 -1.11171560879152e-34 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_60855826_60855852 ENSMUST00000124921.1 523 chr19:60854060-60857209 523 26 CTTTCCTGCCTGTGACAGCACCCATG 1 85.4865588722 1.38343331572 0 chr19_-_60855826_60855852|85.4865588722|1.38343331572 0 IN ENSMUST00000124921 Annotated NA Included I1 1 0.00126247383950042 -0.0030541104418394 0.00154524946026826 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_60857349_60857376 ENSMUST00000080806.9 0 chr19:60857264-60858663 0 27 ATTAAAGACGCATGGAATAAGAGTCTT 1 82.7419960782 1.34735484253 0 chr19_-_60857349_60857376|82.7419960782|1.34735484253 0 IN ENSMUST00000080806 Annotated NA Included I1 1 -6.82064373224717e-19 1.08859867028028e-18 1.56846528572269e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_61129694_61129714 ENSMUST00000127290.7 56 chr19:61127564-61140704 56 20 GCTACATTCTATTCAATTGG 1 72.9922052842 0.0859230733835 4.65973926111e-11 chr19_-_61129694_61129714|72.9922052842|0.0859230733835 4.41211511770234e-11 IN ENSMUST00000127290 Novel NA Excluded E1 6 0.000109553599235728 -2.88207116687514e-05 0.000472865913402687 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_61225791_61225821 ENSMUST00000076046.6 0 chr19:61225652-61225927 0 30 AGCGCAGAGCCAGGAAGCACACCCCGGAAG 1 76.38279737 0.221147061271 0 chr19_-_61225791_61225821|76.38279737|0.221147061271 0 IN ENSMUST00000076046 Annotated NA Included I1 1 -1.09461487440038e-53 -1.02942314319708e-52 1.18373581110681e-52 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_6907541_6907549 ENSMUST00000173091.1 1 chr19:6907280-6907981 1 8 AAGGCAAG 1 74.2489430424 2.73558330288 4.10667582118e-05 chr19_-_6907541_6907549|74.2489430424|2.73558330288 3.70259262164607e-05 IN ENSMUST00000173091 Novel Alt5 Excluded E1 6 0.000435608047765695 8.60552390825585e-05 0.00135920224547734 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_6940921_6940949 ENSMUST00000099774.9 0 chr19:6940482-6941923,chr19:6940482-6941091,chr19:6940907-6941321 0 28 AGTTTCCAGGTCTCACCACCTATTGCAG 1 80.0607552725 0.425406252762 0 chr19_-_6940921_6940949|80.0607552725|0.425406252762 0 IN ENSMUST00000099774 Annotated NA FALSE TRUE TRUE FALSE FALSE FALSE chr19_-_6979313_6979332 ENSMUST00000070878.8 144 chr19:6979141-6980393,chr19:6979177-6980393 31,113 19 CCCCCTTCTCACTGGACTG 1 76.6857347334 1.65360872601 1.69535496752e-11 chr19_-_6979313_6979332|76.6857347334|1.65360872601 1.26374466447032e-11 IN ENSMUST00000070878 Novel NA Excluded E2 3 0.00134383846485545 0.00148874967951273 -0.000364658274379328 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_7279985_7280012 ENSMUST00000163345.1 49 chr19:7277450-7280997,chr19:7279278-7280997 17,32 27 AAATCTGTCTTTCAGGTTTGCCAGAAG 1 87.2367869125 4.06274193261 0 chr19_-_7279985_7280012|87.2367869125|4.06274193261 0 IN ENSMUST00000163345 Annotated NA Non-Neuronal NN1 23 -0.0503467954667829 -0.00338412400193211 0.0613328282271828 TRUE FALSE FALSE FALSE FALSE FALSE chr19_-_7601245_7601272 ENSMUST00000159983.7 0 chr19:7600736-7602042,chr19:7600736-7603008 0 27 CCCTTCCTGCTGTATAGCCCCAGGCTG 1 88.522527108 1.33606453677 0 chr19_-_7601245_7601272|88.522527108|1.33606453677 0 IN ENSMUST00000159983 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr19_-_9883191_9883203 ENSMUST00000025562.7 779 chr19:9878428-9883698 779 12 TGCAGCTTTGTT 1 80.6646965035 1.90618750523 1.22329145369e-06 chr19_-_9883191_9883203|80.6646965035|1.90618750523 5.00641525347234e-07 IN ENSMUST00000025562 Missing in GENCODE NA Muscular M2 20 -0.00457113315628824 -0.0278427961427979 0.0461418421958316 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_10056925_10056947 ENSMUST00000071087.11 75 chr1:10047526+10058719 75 22 AATCATCAGGAACAGCAACCAC 1 84.0264587855 0.625769227672 2.4795721032e-12 chr1_+_10056925_10056947|84.0264587855|0.625769227672 5.83977310952832e-13 IN ENSMUST00000071087 Novel NA Excluded E1 6 0.000152972113442413 -0.000290555184608338 0.000858710929021129 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_10059823_10059847 ENSMUST00000071087.11 467 chr1:10058823+10064332 467 24 GGCATTACACAAGCAAAGAGAAAG 1 82.4077084611 2.69739285431 0 chr1_+_10059823_10059847|82.4077084611|2.69739285431 0 IN ENSMUST00000071087 Annotated NA Neuro-Muscular NM4 16 0.0227971154630956 -0.0307412963391666 0.0770693546382277 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_10084012_10084038 ENSMUST00000071087.11 8 chr1:10083558+10085746,chr1:10083558+10088050 4,4 26 TGGAGTGGCTCCCACACATCATTGCA 1 61.4603528222 1.36956667798 0 chr1_+_10084012_10084038|61.4603528222|1.36956667798 0 IN ENSMUST00000071087 Missing in GENCODE NA Excluded E1 6 0.00213084010541368 0.000837725585370941 0.00305663029045774 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_105696733_105696757 ENSMUST00000186807.6 51 chr1:105696596+105703930 51 24 AGAATGGTTTTACACCTCTGTCAG 1 82.9899323908 4.76149999244 0 chr1_+_105696733_105696757|82.9899323908|4.76149999244 0 IN ENSMUST00000186807 Missing in GENCODE NA Excluded E2 3 3.3155642338114e-05 -0.00921347627300661 0.000467647054756176 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_11562962_11562991 ENSMUST00000171690.8 0 chr1:11545282+11588373 0 29 GTATCGCGATTTCAGATGAACTTGATAAG 1 87.3883246476 2.19696971955 0 chr1_+_11562962_11562991|87.3883246476|2.19696971955 0 IN ENSMUST00000171690 Annotated NA Included I1 1 -2.58242813932547e-06 2.02792831859707e-05 5.28974841847138e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_11588542_11588571 ENSMUST00000191437.1 0 chr1:11579339+11596150 0 29 GAAGGTGAGGATCTCCTTCGTGAATCCGT 1 75.4053807048 1.47100000834 0 chr1_+_11588542_11588571|75.4053807048|1.47100000834 0 IN ENSMUST00000191437 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_116122954_116122957 ENSMUST00000043725.8 119 chr1:116117714+116157392 119 3 GTG 3 72.935823165 None 0.911202748372 chr1_+_116145120_116145123|65.2725505776|None,chr1_+_116122954_116122957|72.935823165|None,chr1_+_116148798_116148801|58.126350016|0.103857142585 0.954727974027134 RESCUED ENSMUST00000043725 Novel NA Included I1 1 1.93572615884772e-05 -9.08220293416533e-05 -4.05951825122352e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_118512704_118512728 ENSMUST00000187713.6 274 chr1:118510376+118521826,chr1:118512222+118521826 271,3 24 ACGGTACTACCACTAAAGCGGAGG 1 78.0029978162 3.52596433993 0 chr1_+_118512704_118512728|78.0029978162|3.52596433993 0 IN ENSMUST00000187713 Annotated NA Neuronal N3 17 0.0551180000575539 0.0246450825267696 0.0145002049719902 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_118523320_118523347 ENSMUST00000178710.7 719 chr1:118521934+118525296 719 27 GATCCAGATCTGCTAACCCTGCTGGTG 1 75.9628489826 4.96106449827 0 chr1_+_118523320_118523347|75.9628489826|4.96106449827 0 IN ENSMUST00000178710 Annotated NA Neuronal N1 18 0.0789667047411353 0.0363037881889164 -0.0480180833079687 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE TRUE chr1_+_118541674_118541698 ENSMUST00000049404.12 1088 chr1:118539369+118543101 1088 24 CTGTTAGGAGACGCCAGGAGCAAG 1 79.934836357 5.73942850104 0 chr1_+_118541674_118541698|79.934836357|5.73942850104 0 IN ENSMUST00000049404 Annotated NA Neuro-Muscular NM3 19 0.0615860194066083 -0.0399840770458222 -0.0549679387692363 TRUE TRUE TRUE 10.5 1 12.5 1 TRUE TRUE FALSE chr1_+_118547655_118547658 ENSMUST00000178710.7 822 chr1:118545456+118547864 822 3 AGA 2 73.1474373774 6.24614300047 0.136317351432 chr1_+_118547655_118547658|73.1474373774|6.24614300047,chr1_+_118546287_118546290|59.9885136537|-0.16914285134 0.564233873342183 RESCUED ENSMUST00000178710 Annotated Alt5 Included I2 10 0.00548265530328467 0.0905393371847124 0.00539179021023429 TRUE FALSE FALSE TRUE TRUE FALSE chr1_+_127919732_127919740 ENSMUST00000037649.5 4 chr1:127919641+127924727 4 8 CATTCTCA 1 71.4063243889 -0.46083333157 0.000302388248059 chr1_+_127919732_127919740|71.4063243889|-0.46083333157 0.000295731317015657 IN ENSMUST00000037649 Novel NA Excluded E1 6 0.000911325900841356 0.000527857693607912 0.000743431999897419 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_127941593_127941614 ENSMUST00000037649.5 1114 chr1:127939148+127942373 1114 21 CTGACTGAATCTTCTGATGAG 1 78.2280429193 3.93871998787 2.84217094304e-12 chr1_+_127941593_127941614|78.2280429193|3.93871998787 1.73794312274822e-12 IN ENSMUST00000037649 Annotated NA Neuronal N6 15 0.0170647855950636 0.00159787991998573 0.0423924249468837 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_128174451_128174477 ENSMUST00000187900.6 5 chr1:128169057+128174948 5 26 CCCAAGTGACCTGGACAGGACCCGAG 1 75.5894771285 0.385966662504 0 chr1_+_128174451_128174477|75.5894771285|0.385966662504 0 IN ENSMUST00000187900 Novel NA Excluded E1 6 -0.000207218601073188 -0.000383735093172432 0.00066823178870264 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_128255432_128255461 ENSMUST00000027592.5 0 chr1:128252305+128256154,chr1:128252305+128256118 0 29 TGAAGCCTGTCTGCAGTTTTCACAAATTT 1 75.7161211049 3.80887877224 0 chr1_+_128255432_128255461|75.7161211049|3.80887877224 0 IN ENSMUST00000027592 Annotated NA Included I1 1 5.6104581232459e-06 -2.3365350001634e-05 -1.35959859696458e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_130082465_130082471 ENSMUST00000073527.12 267 chr1:129951568+130103070 267 6 GCTCAG 1 73.4899078251 3.9232000351 0.134522670667 chr1_+_130082465_130082471|73.4899078251|3.9232000351 0.1253131642859 RESCUED ENSMUST00000073527 Missing in GENCODE NA Excluded E4 11 0.00176444914390687 -0.0108140243107181 0.000914852072493694 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_132326205_132326229 ENSMUST00000082125.5 77 chr1:132325073+132327696 77 24 TGGGCAGATCACGCTTAGTGACTG 1 70.0097189239 0.693750005182 0 chr1_+_132326205_132326229|70.0097189239|0.693750005182 0 IN ENSMUST00000082125 Annotated NA Neuronal N4 13 0.0345417304478904 0.00471724277370844 0.0506140699341588 TRUE TRUE FALSE FALSE FALSE FALSE chr1_+_132484051_132484077 ENSMUST00000190825.6 0 chr1:132477527+132484801,chr1:132477527+132484745,chr1:132477854+132484745 0 26 AGTCCTTTGGACAGAACTACCCAGAG 1 85.5923832418 5.10406668012 1.52344803439e-12 chr1_+_132484051_132484077|85.5923832418|5.10406668012 2.94764213037979e-13 IN ENSMUST00000190825 Annotated NA Included I1 1 -5.80596618858353e-51 3.31676485114134e-50 1.69394621577457e-50 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_132484905_132484918 ENSMUST00000188575.6 1 chr1:132484801+132489587 1 13 TCTGTTCTTTGTG 1 76.0010009984 4.1165293219 2.77592296372e-07 chr1_+_132484905_132484918|76.0010009984|4.1165293219 2.21574578351813e-07 IN ENSMUST00000188575 Novel Alt5 Excluded E1 6 -0.000274406755685596 0.0010786103112879 0.000930142967162594 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_134140259_134140289 ENSMUST00000159963.7 0 chr1:134138772+134143239 0 30 GTGTGATGACTCTGCTGATGGTCCAGTGGG 1 83.7893638602 0.801823539002 0 chr1_+_134140259_134140289|83.7893638602|0.801823539002 0 IN ENSMUST00000159963 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_134182779_134182809 ENSMUST00000156873.7 0 chr1:134182552+134183496,chr1:134182275+134183496,chr1:134182552+134183237,chr1:134182552+134183483 0 30 GCTTTGCGGTCCTGATGCTGCTCCAGAGCT 1 77.2433065914 1.1510294105 0 chr1_+_134182779_134182809|77.2433065914|1.1510294105 0 IN ENSMUST00000156873 Annotated NA Included I1 1 -5.16953547846649e-06 -2.94615333449275e-05 6.69387425879852e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_135802593_135802623 ENSMUST00000132795.7 0 chr1:135800020+135805549,chr1:135800020+135803281,chr1:135799496+135803281 0 30 GTGCAGCCTTGCCACCACCATGCCGGAAGT 1 81.8050792452 1.09902939214 0 chr1_+_135802593_135802623|81.8050792452|1.09902939214 0 IN ENSMUST00000132795 Annotated NA Included I1 1 -4.40492136098639e-07 5.25650599944288e-06 2.82344587169495e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_135803281_135803285 ENSMUST00000132795.7 0 chr1:135800020+135805549,chr1:135802623+135805052,chr1:135802623+135805054 0 4 TGAG 2 75.2004646743 2.43224996328 0.99991123262 chr1_+_135803281_135803285|75.2004646743|2.43224996328 0.92570847579828 RESCUED ENSMUST00000132795 Annotated NA Included I1 1 -6.22360965814076e-07 6.34940053061423e-06 3.86993253347684e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_135836996_135837000 ENSMUST00000188028.6 10 chr1:135836446+135840864 10 4 GCAG 1 71.0413079989 -0.269374998752 0.0650776237211 chr1_+_135836996_135837000|71.0413079989|-0.269374998752 0.0639251850609508 IN ENSMUST00000188028 Novel NA Included I2 10 0.00161909765087792 -0.0022733994544204 -0.00629439430434605 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_135841900_135841911 ENSMUST00000188028.6 0 chr1:135840912+135845506,chr1:135840912+135843784,chr1:135840912+135843773,chr1:135840912+135845554,chr1:135840912+135842014,chr1:135840913+135842008 0 11 GGAACAGGAAG 1 87.2348879434 2.53660003146 0.00025745870238 chr1_+_135841900_135841911|87.2348879434|2.53660003146 4.31516660848175e-05 IN ENSMUST00000188028 Annotated NA Included I1 1 -7.090952970016e-14 5.72788386990167e-15 -1.32954290506886e-13 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_135842014_135842026 ENSMUST00000188028.6 0 chr1:135840912+135845506,chr1:135840912+135843784,chr1:135840912+135843773,chr1:135841911+135843784,chr1:135840912+135845554,chr1:135841911+135845554 0 12 AAGCTGTGGAAG 1 82.1708206961 1.22500001418 0.000110024098206 chr1_+_135842014_135842026|82.1708206961|1.22500001418 3.46724370560159e-05 IN ENSMUST00000188028 Annotated NA Included I1 1 3.28033405443171e-08 -4.09428029512015e-09 4.02160266597556e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_135843784_135843814 ENSMUST00000188028.6 0 chr1:135840912+135845554,chr1:135841911+135845554,chr1:135840912+135845506,chr1:135842026+135845554 0 30 AGGAAGACTGGAGTGAAGAAGAGGAGGACG 1 64.6571119518 1.74344120382 0 chr1_+_135843784_135843814|64.6571119518|1.74344120382 0 IN ENSMUST00000188028 Annotated Alt5 Included I2 10 -0.00220027239362279 0.000577667685972703 -0.00413891753110855 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_135850378_135850387 ENSMUST00000188028.6 2051 chr1:135849460+135850710 2051 9 CAAGCTCAG 1 79.3452582379 2.14846157197 1.84325666522e-05 chr1_+_135850378_135850387|79.3452582379|2.14846157197 9.46040027560713e-06 IN ENSMUST00000188028 Annotated NA Excluded E2 3 -0.000346893806924124 -0.00639987822024856 0.00267034045979334 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_136152572_136152575 ENSMUST00000075164.10 1 chr1:136152415+136152757 1 3 CAT 1 65.3578660808 -0.6318571509 0.0202397708206 chr1_+_136152572_136152575|65.3578660808|-0.6318571509 0.0202332537801694 IN ENSMUST00000075164 Novel NA Excluded E4 11 0.000147577006606373 0.00205918485643675 -0.00600071553275689 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_136173471_136173481 ENSMUST00000075164.10 4 chr1:136173002+136174036 4 10 TGACTGCCGG 1 70.1650200705 4.91292854718 3.79978889231e-06 chr1_+_136173471_136173481|70.1650200705|4.91292854718 3.76071232910391e-06 IN ENSMUST00000075164 Novel Alt3 Excluded E1 6 0.000506295474472834 -0.000775238349641584 0.00204097106328682 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_136555591_136555618 ENSMUST00000194018.1 0 chr1:136545160+136555750 0 27 GACCGCCTTTCTGCCCTGATGACCAAG 1 83.6127942595 -0.305161295939 0 chr1_+_136555591_136555618|83.6127942595|-0.305161295939 0 IN ENSMUST00000194018 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_140578454_140578475 ENSMUST00000120709.7 280 chr1:140574857+140584018 280 21 TCTCGAGAAATAGGATCTCAA 1 82.7451725357 2.85816001415 8.11439804238e-12 chr1_+_140578454_140578475|82.7451725357|2.85816001415 2.32458496896015e-12 IN ENSMUST00000120709 Annotated NA Excluded E4 11 -0.0128729034963591 0.0785589263828079 -0.0254066760699944 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_143803064_143803077 ENSMUST00000189936.6 1 chr1:143802233+143806683 1 13 ACAAGAATACATG 1 77.2572899094 0.797882348299 2.58034527523e-07 chr1_+_143803064_143803077|77.2572899094|0.797882348299 1.79963017044038e-07 IN ENSMUST00000189936 Novel Alt5 Excluded E1 6 0.000125281367996904 5.56824721985937e-05 0.000386874633691898 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_146499078_146499086 ENSMUST00000125331.1 1 chr1:146498835+146514667 1 8 TTAACCAG 1 85.5731518637 1.84091665472 0.000942501075036 chr1_+_146499078_146499086|85.5731518637|1.84091665472 0.000182754976738697 IN ENSMUST00000125331 Novel NA Excluded E2 3 -0.0026825219829112 -0.00441467906590733 0.0106568369065401 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_151354633_151354639 ENSMUST00000097543.7 55 chr1:151354093+151356128 55 6 TTGGAG 1 74.605051541 5.25339995623 0.00192932786127 chr1_+_151354633_151354639|74.605051541|5.25339995623 0.00170658138484003 IN ENSMUST00000097543 Novel Alt3 Excluded E1 6 -2.73672291642098e-05 4.40856822976998e-05 -0.000153264904017535 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_151812753_151812768 ENSMUST00000059498.11 182 chr1:151811704+151818309 182 15 CAGCCATATTAAAAG 1 75.5628225075 4.51047371249 2.39597280904e-08 chr1_+_151812753_151812768|75.5628225075|4.51047371249 1.98528466999193e-08 IN ENSMUST00000059498 Annotated Alt3 Neuronal N6 15 0.017468173496448 0.00872746270230295 0.00402076559775493 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_151812756_151812768 ENSMUST00000059498.11 93 chr1:151811704+151818309 93 12 CCATATTAAAAG 1 74.999104895 4.370312538 1.53411993442e-06 chr1_+_151812756_151812768|74.999104895|4.370312538 1.32442338141026e-06 IN ENSMUST00000059498 Novel NA Excluded E2 3 0.0086397936829388 0.00363535828420901 0.00506986975102542 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_152833322_152833345 ENSMUST00000186568.6 0 chr1:152831689+152833776 0 23 GTCACAAGCAAAAAGAGCCCAAG 1 90.5605352856 1.24266666878 2.92743607133e-11 chr1_+_152833322_152833345|90.5605352856|1.24266666878 4.58044713269601e-12 IN ENSMUST00000186568 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_160196613_160196642 ENSMUST00000097193.2 9 chr1:160195545+160196945 9 29 ATTTCCACCTGAGTTGTAGTATGCATGAG 1 77.9887728112 -0.0573636347597 0 chr1_+_160196613_160196642|77.9887728112|-0.0573636347597 0 IN ENSMUST00000097193 Novel NA Excluded E2 3 0.00178301408675187 -0.000547169888934657 0.00507071083324874 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_161037311_161037315 ENSMUST00000159119.7 51 chr1:161036852+161037504 51 4 AAAG 1 80.5350832299 0.758249997161 0.00977861053173 chr1_+_161037311_161037315|80.5350832299|0.758249997161 0.0040938086755532 IN ENSMUST00000159119 Novel Alt5 Excluded E1 6 0.000121323282340225 2.90106673052517e-05 0.00069325575547499 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_164055553_164055575 ENSMUST00000027874.5 0 chr1:164054727+164055676 0 22 CAAAGAAATTTGTTCCTGCTAG 1 88.7484699056 1.99842304249 5.24664756085e-11 chr1_+_164055553_164055575|88.7484699056|1.99842304249 8.20532530809714e-12 IN ENSMUST00000027874 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_164076141_164076160 ENSMUST00000192047.5 0 chr1:164072241+164079677,chr1:164073177+164079677,chr1:164073228+164079677 0 19 GCAAGAAATCTCAAGAAAG 1 89.0968789476 1.41504348037 2.33776515923e-08 chr1_+_164076141_164076160|89.0968789476|1.41504348037 3.63048990870141e-09 IN ENSMUST00000192047 Annotated NA Included I1 1 -1.09665284243399e-05 4.00753365449185e-06 -4.00835327392079e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_164348158_164348177 ENSMUST00000193808.5 2 chr1:164347879+164379358 2 19 ATTTATTTATTCATTATAT 1 88.4076222134 -0.0639130449601 4.47016645921e-10 chr1_+_164348158_164348177|88.4076222134|-0.0639130449601 7.06206204625914e-11 IN ENSMUST00000193808 Novel NA Excluded E1 6 2.82892542206876e-05 -0.00057700994371944 -2.53046047769371e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_165479550_165479578 ENSMUST00000193575.1 1 chr1:165478305+165480902 1 28 GAGCCTCTCAGCTGTTTCGGATTTGGAG 1 78.6946368935 3.2176874837 0 chr1_+_165479550_165479578|78.6946368935|3.2176874837 0 IN ENSMUST00000193575 Novel Alt5 Excluded E3 2 0.000897408143071021 0.000212895237307667 0.000896649938932437 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_16703899_16703921 ENSMUST00000026881.10 48 chr1:16700923+16706172 48 22 GATATGCTATTTAGAAAATATG 1 85.961439257 0.815384620174 1.15973897152e-12 chr1_+_16703899_16703921|85.961439257|0.815384620174 2.16049400592055e-13 IN ENSMUST00000026881 Missing in GENCODE NA Excluded E1 6 -0.000321721832544406 -0.000411531279249914 0.00031995174605104 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_171019527_171019548 ENSMUST00000078825.4 0 chr1:171019019+171019895 0 21 CTTTCTCTGGCATTCAAGCTG 1 89.9831105687 0.536359984893 1.93494997802e-10 chr1_+_171019527_171019548|89.9831105687|0.536359984893 2.99712477058733e-11 IN ENSMUST00000078825 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_171462602_171462615 ENSMUST00000043839.4 0 chr1:171461912+171462888 0 13 GAACAAAGAAAGG 1 90.8805978977 1.67952941796 1.42901107349e-05 chr1_+_171462602_171462615|90.8805978977|1.67952941796 2.25742189929878e-06 IN ENSMUST00000043839 Annotated NA Included I1 1 3.6589423954191e-70 2.37247119960776e-70 2.26794357011111e-70 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_171938451_171938481 ENSMUST00000195656.5 0 chr1:171938115+171939395 0 30 GTTCTCTTCCTTTGACTAGCCAACATCCAG 1 89.5138580378 0.252294116804 0 chr1_+_171938451_171938481|89.5138580378|0.252294116804 0 IN ENSMUST00000195656 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_172129829_172129833 ENSMUST00000127662.1 2 chr1:172129320+172129905 2 4 GCTG 1 81.6830273214 0.101499997545 0.00876574333204 chr1_+_172129829_172129833|81.6830273214|0.101499997545 0.0030028103531955 IN ENSMUST00000127662 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_174242227_174242245 ENSMUST00000027817.7 0 chr1:174241153+174243147 0 18 GGCCTATTTTCTGGATGG 1 81.7378902653 2.96140913699 2.86963763863e-08 chr1_+_174242227_174242245|81.7378902653|2.96140913699 9.73759606281988e-09 IN ENSMUST00000027817 Annotated NA Included I1 1 -5.67756031145067e-05 1.48192702027667e-05 -0.000201915115635088 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_176888760_176888787 ENSMUST00000133305.7 201 chr1:176878106+176919543 201 27 AATGAAGTATGGATGTTCCAGAAACAG 1 75.3914319135 0.286354840403 0 chr1_+_176888760_176888787|75.3914319135|0.286354840403 0 IN ENSMUST00000133305 Missing in GENCODE NA Excluded E2 3 0.00898061634191014 0.002754917171946 0.00965324201613584 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_178040308_178040333 ENSMUST00000191719.5 0 chr1:178017741+178046919 0 25 AGACGTTTATTACAACTTAAGCCAG 1 84.8346600395 0.695103434653 2.58895127558e-11 chr1_+_178040308_178040333|84.8346600395|0.695103434653 5.47295542219217e-12 IN ENSMUST00000191719 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_178070528_178070553 ENSMUST00000192146.1 23 chr1:178046997+178077454 23 25 AGACGTTTATTACAACTTAAGCCAG 1 84.8346600395 0.335758620937 0 chr1_+_178070528_178070553|84.8346600395|0.335758620937 0 IN ENSMUST00000192146 Annotated NA FALSE FALSE TRUE FALSE FALSE FALSE chr1_+_179606247_179606269 ENSMUST00000040706.8 0 chr1:179605067+179606436 0 22 CCCTCTCTTGTCCAAGCTTAAG 1 89.6219611704 2.0215384425 7.63407115301e-11 chr1_+_179606247_179606269|89.6219611704|2.0215384425 1.18060006215615e-11 IN ENSMUST00000040706 Annotated NA Included I1 1 1.21856129160042e-76 -9.83938062727317e-77 -2.04976880357627e-76 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_180600449_180600474 ENSMUST00000195560.1 0 chr1:180600210+180601071 0 25 GTACATTGTCTACGACATTGCTCAG 1 81.0445593793 4.87096547412 7.38964445191e-13 chr1_+_180600449_180600474|81.0445593793|4.87096547412 2.82995848976952e-13 IN ENSMUST00000195560 Annotated NA Included I1 1 -4.4027514786044e-60 3.24444011511354e-60 1.09095496086504e-59 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_182611088_182611100 ENSMUST00000048941.13 0 chr1:182607769+182613325 0 12 ATTCCCAAGGAG 1 86.5409355765 1.49631248973 0.000330155149958 chr1_+_182611088_182611100|86.5409355765|1.49631248973 5.83077615019523e-05 IN ENSMUST00000048941 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_185387356_185387377 ENSMUST00000192284.5 2580 chr1:185387118+185394362 2580 21 CTGCGAGCTCTCTGTAAGAAG 1 78.6189888694 4.88304002285 6.41176001182e-12 chr1_+_185387356_185387377|78.6189888694|4.88304002285 3.69682062739685e-12 IN ENSMUST00000192284 Missing in GENCODE NA Neuronal N3 17 0.047426052985135 0.0212222002589045 0.0187157111537341 TRUE TRUE TRUE 11.5 1 14.5 1 FALSE FALSE TRUE chr1_+_191612246_191612271 ENSMUST00000045450.6 48 chr1:191612064+191613014 48 25 AAAATTGCTGACTTGAGGCAGAATG 1 80.0416274745 0.277379310786 0 chr1_+_191612246_191612271|80.0416274745|0.277379310786 0 IN ENSMUST00000045450 Novel NA Excluded E1 6 0.00042498276411589 -0.000108477124537007 0.0021518809125982 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_19212396_19212423 ENSMUST00000027059.10 9 chr1:19209248+19213950 9 27 ATGTTAGTCCACACCTATTCATCCATG 1 89.1542278148 4.40883865376 0 chr1_+_19212396_19212423|89.1542278148|4.40883865376 0 IN ENSMUST00000027059 Missing in GENCODE Alt5 Excluded E2 3 -0.00439243211842057 0.000512479415370527 0.00348984516761847 TRUE TRUE FALSE FALSE FALSE FALSE chr1_+_24195516_24195537 ENSMUST00000054588.14 0 chr1:24194766+24196890,chr1:24195457+24196890 0 21 ACCAGCCAGACCACTGATGAG 1 86.7959153382 1.37536000013 3.20142135024e-10 chr1_+_24195516_24195537|86.7959153382|1.37536000013 5.53820322934939e-11 IN ENSMUST00000054588 Annotated NA Excluded E4 11 -0.0027006351121441 0.00386282623046017 0.0940004038800101 TRUE TRUE FALSE 15.5 1 TRUE FALSE FALSE chr1_+_24204657_24204681 ENSMUST00000054588.14 0 chr1:24202332+24205053 0 24 GGCCGTGGTATTCCAGGACCCCCT 1 81.8882195656 2.36174999869 9.56745793701e-12 chr1_+_24204657_24204681|81.8882195656|2.36174999869 3.16369153097185e-12 IN ENSMUST00000054588 Annotated NA Included I1 1 4.85261781286165e-13 -7.95238718293161e-14 -2.88445294403651e-13 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_34296741_34296759 ENSMUST00000183100.7 852 chr1:34295536+34299720 852 18 TTCTTCCTGGGAAATCAG 1 78.4546762511 5.49463637309 2.36582309299e-10 chr1_+_34296741_34296759|78.4546762511|5.49463637309 1.39870781623586e-10 IN ENSMUST00000183100 Annotated NA Muscular M2 20 -0.0351553935014765 -0.0618436475027832 0.143764149345783 TRUE TRUE TRUE 10.5 -1 10.5 -1 FALSE FALSE FALSE chr1_+_34443768_34443779 ENSMUST00000136770.2 1 chr1:34443695+34443996 1 11 TGGGGCTCATT 1 74.4166047516 3.08846665298 2.66358221035e-07 chr1_+_34443768_34443779|74.4166047516|3.08846665298 2.38076879544025e-07 IN ENSMUST00000136770 Novel Alt3 Excluded E3 2 -0.000737245138779936 0.00126349595378175 -0.00430961310502526 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_36692257_36692284 ENSMUST00000193235.1 0 chr1:36691689+36692450 0 27 ATCATGATAGCAGCACAGAAGGGACTG 1 68.1140298497 1.91638708307 0 chr1_+_36692257_36692284|68.1140298497|1.91638708307 0 IN ENSMUST00000193235 Annotated Alt5 Excluded E4 11 -0.000726162217101387 0.00156410541611908 -0.00790789498063339 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_37374271_37374289 ENSMUST00000140264.7 699 chr1:37372419+37377577 699 18 CAGTTTTGAGGAGTGTTG 1 87.0923271532 4.21927267042 2.91947799269e-10 chr1_+_37374271_37374289|87.0923271532|4.21927267042 4.94099205994303e-11 IN ENSMUST00000140264 Annotated NA Neuronal N3 17 0.0333276080109616 0.0147978543715173 0.0626164785711784 TRUE TRUE FALSE FALSE FALSE FALSE chr1_+_37374274_37374289 ENSMUST00000140264.7 193 chr1:37372419+37377577 193 15 TTTTGAGGAGTGTTG 1 86.5202886033 4.07168415032 1.86955728676e-08 chr1_+_37374274_37374289|86.5202886033|4.07168415032 3.30754890143226e-09 IN ENSMUST00000140264 Annotated NA Neuro-Muscular NM4 16 0.0185883404093675 -0.0022440132376745 0.0495733921982821 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_40008330_40008339 ENSMUST00000168431.6 1626 chr1:40007530+40009687 1626 9 GGAGAAGTG 1 77.7032023835 2.02376920443 3.19475795029e-05 chr1_+_40008330_40008339|77.7032023835|2.02376920443 2.1033055975006e-05 IN ENSMUST00000168431 Annotated NA Neuro-Muscular NM3 19 0.0329056164245427 -0.00655809090871265 -0.0354048293728364 TRUE TRUE TRUE 15.5 1 FALSE FALSE FALSE chr1_+_44773639_44773663 ENSMUST00000074525.9 70 chr1:44773387+44774052 70 24 AGCAGCAGAGGCAGCAGATGCTGG 1 75.0212710436 2.4751428536 0 chr1_+_44773639_44773663|75.0212710436|2.4751428536 0 IN ENSMUST00000074525 Annotated NA Neuronal N6 15 0.00843643387196205 0.000719203876461759 0.0157596464019678 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_44773644_44773663 ENSMUST00000074525.9 31 chr1:44773387+44774052 31 19 CAGAGGCAGCAGATGCTGG 1 71.1656386856 2.36447826676 9.12336872716e-12 chr1_+_44773644_44773663|71.1656386856|2.36447826676 8.94928575689846e-12 IN ENSMUST00000074525 Novel NA Excluded E2 3 0.00468479482932243 0.00119182399302294 0.00636145467521133 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_44790695_44790706 ENSMUST00000074525.9 166 chr1:44788542+44794949 166 11 CGCCAGAGATG 1 67.9314180745 3.58206667701 5.95299618056e-06 chr1_+_44790695_44790706|67.9314180745|3.58206667701 5.93948705374103e-06 IN ENSMUST00000074525 Annotated NA Neuronal N6 15 0.0150651122285356 0.00447123144235665 0.0226604961721922 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_4841106_4841132 ENSMUST00000119612.8 0 chr1:4832368+4844962 0 26 GCATGATGCACAGCTCATGTCAGCAG 1 76.5191433522 3.4178000326 2.78976841628e-12 chr1_+_4841106_4841132|76.5191433522|3.4178000326 2.11686224105279e-12 IN ENSMUST00000119612 Annotated Alt5 Excluded E3 2 -8.00785123034993e-05 0.00025700415736276 0.000799931052899664 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_5083618_5083625 ENSMUST00000044369.12 19 chr1:5083278+5084416 19 7 AATTTGG 1 64.1621715478 0.278363641013 0.000268661674666 chr1_+_5083618_5083625|64.1621715478|0.278363641013 0.000268629284145061 IN ENSMUST00000044369 Novel Alt5 Excluded E1 6 4.7736761541767e-05 -9.97722444622193e-06 0.000291030431900536 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_50943196_50943223 ENSMUST00000081851.3 0 chr1:50938342+50979299,chr1:50938342+51071467 0 27 ATACAGGATCGGGATCTGGAGATGGAG 1 87.7227848983 3.6174193548 0 chr1_+_50943196_50943223|87.7227848983|3.6174193548 0 IN ENSMUST00000081851 Annotated NA Included I1 1 3.49734896097153e-17 -3.56662098680647e-16 -1.42575360572962e-16 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_52082861_52082879 ENSMUST00000168302.7 0 chr1:52082577+52082977 0 18 GAATGTTTCAACTCTAAG 1 90.1047136453 2.87786364623 5.50062395632e-09 chr1_+_52082861_52082879|90.1047136453|2.87786364623 8.53168646841596e-10 IN ENSMUST00000168302 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_52144085_52144115 ENSMUST00000185516.1 0 chr1:52142960+52144164,chr1:52142960+52144203 0 30 AGATGTGAACGAGAAAAACACAGTTAAAGG 1 85.2597183801 3.77561758371 0 chr1_+_52144085_52144115|85.2597183801|3.77561758371 0 IN ENSMUST00000185516 Annotated NA Included I1 1 1.45386998709475e-82 4.27566682685371e-83 2.61377469455941e-83 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_55136720_55136739 ENSMUST00000159311.7 3 chr1:55131359+55145123 3 19 TACACTTGCTGTTCAGCAG 1 69.8128130904 4.65730435174 1.95271354642e-10 chr1_+_55136720_55136739|69.8128130904|4.65730435174 1.93670190995476e-10 IN ENSMUST00000159311 Novel Alt5 Excluded E3 2 -0.00156607446007489 -0.00073757621773635 -0.00743921469538857 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_59705727_59705756 ENSMUST00000187491.1 0 chr1:59704208+59706632,chr1:59704750+59706632 0 29 GCCAGTCAAGTCCCAAACACAAAGGAAAG 1 87.5716960104 4.17806064902 0 chr1_+_59705727_59705756|87.5716960104|4.17806064902 0 IN ENSMUST00000187491 Annotated Alt5 Excluded E3 2 -0.000719548703287063 0.000241443143752342 -0.000943057564744558 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_60438941_60438959 ENSMUST00000052332.14 1110 chr1:60437232+60443984 1110 18 TGGTTGCTTAGATTTAAG 1 80.3280265433 5.43949995258 3.82556208933e-10 chr1_+_60438941_60438959|80.3280265433|5.43949995258 1.66050617700364e-10 IN ENSMUST00000052332 Annotated Alt5 Neuronal N4 13 0.0381172943061972 0.0172260452012111 0.0137742717833522 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr1_+_60438952_60438959 ENSMUST00000052332.14 31 chr1:60437232+60443984 31 7 ATTTAAG 1 78.1826402942 5.6409999674 0.00160588901143 chr1_+_60438952_60438959|78.1826402942|5.6409999674 0.000988516756609381 IN ENSMUST00000052332 Missing in GENCODE Alt5 Excluded E1 6 0.0015425013044402 0.00076401798795985 -0.000623161780850126 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_6265721_6265736 ENSMUST00000027040.12 1 chr1:6265621+6268697 1 15 AAGAGAATGGAGCAT 1 69.2737820763 0.149210526951 1.11213011023e-08 chr1_+_6265721_6265736|69.2737820763|0.149210526951 1.10573834533056e-08 IN ENSMUST00000027040 Novel NA Excluded E2 3 0.00118756233071212 0.00187463501915085 -0.000279814509470834 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_62786280_62786301 ENSMUST00000102822.8 0 chr1:62785141+62795708,chr1:62785141+62815332,chr1:62785141+62812533 0 21 AACCCATATCAGCTTTTGCAG 1 90.2140942661 2.94176003724 2.39697328652e-09 chr1_+_62786280_62786301|90.2140942661|2.94176003724 3.72363917477969e-10 IN ENSMUST00000102822 Annotated Alt3 Included I2 10 -0.000146614196450882 -0.00319580015563633 0.00388560024274916 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_63177486_63177511 ENSMUST00000129339.7 3 chr1:63177291+63177753 3 25 CTGGTTCTTCCGCGTCTTTGGACAA 1 74.8508126707 -0.263551723951 0 chr1_+_63177486_63177511|74.8508126707|-0.263551723951 0 IN ENSMUST00000129339 Missing in GENCODE NA Excluded E1 6 -4.26411572834902e-05 -0.000168008240494875 -9.91635831443184e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_63177866_63177876 ENSMUST00000142062.7 0 chr1:63177291+63178438 0 10 AAAAGGCCAG 1 71.6113094728 3.77835716946 0.0010799258538 chr1_+_63177866_63177876|71.6113094728|3.77835716946 0.00105312357553367 IN ENSMUST00000142062 Annotated Alt5 Excluded E1 6 0.000582467383360912 3.05579371450019e-05 0.00193008313544579 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_66701616_66701636 ENSMUST00000190404.1 0 chr1:66701017+66714576,chr1:66701028+66706445 0 20 GCACCCTGCTCTTCAGGGAG 1 89.6969531869 1.49154166318 4.90490492666e-09 chr1_+_66701616_66701636|89.6969531869|1.49154166318 7.58559881575138e-10 IN ENSMUST00000190404 Annotated Alt3 Excluded E1 6 0.00130285889894012 0.000216104634698857 0.00318505477337586 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_72583719_72583737 ENSMUST00000136498.7 1 chr1:72583438+72585637 1 18 TCAGCATACTAGGCCTTG 1 69.6576845773 -0.348772726614 1.2374812286e-10 chr1_+_72583719_72583737|69.6576845773|-0.348772726614 1.22831078641639e-10 IN ENSMUST00000136498 Novel Alt5 Excluded E1 6 -3.50293883302472e-05 0.000259042904112849 5.09071145691896e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_75244562_75244590 ENSMUST00000188346.6 2 chr1:75243661+75244793 2 28 CCTGCCCTGGCCACAGGACTAGGCAGAG 1 82.003262567 1.04562500678 0 chr1_+_75244562_75244590|82.003262567|1.04562500678 0 IN ENSMUST00000188346 Missing in GENCODE Alt5 Excluded E3 2 0.00753073534380486 -0.00246098876761749 -0.00336861854247181 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_75384038_75384068 ENSMUST00000148515.7 0 chr1:75375833+75384655,chr1:75383663+75384655,chr1:75383179+75384655 0 30 TTTTCCGCTCCTGCAGAAAGCAAAGTTACG 1 67.9842439425 4.9890587961 0 chr1_+_75384038_75384068|67.9842439425|4.9890587961 0 IN ENSMUST00000148515 Annotated Alt5 Other O1 4 0.00589224853983311 0.0208682045854543 -0.011944582313139 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_75418430_75418457 ENSMUST00000087122.11 0 chr1:75418005+75418970 0 27 GCCCGTGGGCGTCGTTGCCTTTCTCTG 1 84.0114051394 3.05296780505 0 chr1_+_75418430_75418457|84.0114051394|3.05296780505 0 IN ENSMUST00000087122 Annotated NA Included I1 1 1.70607197854332e-06 -9.59906671256927e-07 -3.3858689078329e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_75441159_75441174 ENSMUST00000037796.13 451 chr1:75440542+75441474 451 15 CTGCCTTGCTCTGGG 1 79.9497518962 2.21384213316 3.32147465087e-09 chr1_+_75441159_75441174|79.9497518962|2.21384213316 1.53924017975982e-09 IN ENSMUST00000037796 Missing in GENCODE NA Excluded E3 2 0.00123694097273397 -0.0408169849727596 0.000271948116762951 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_82652160_82652187 ENSMUST00000113457.8 0 chr1:82651307+82653300 0 27 GGTCCTGATGGCTTGAAAGGACAAAAG 1 86.0767239454 2.02567739124 0 chr1_+_82652160_82652187|86.0767239454|2.02567739124 0 IN ENSMUST00000113457 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_82739468_82739477 ENSMUST00000078332.12 149 chr1:82735507+82741817 149 9 GCATGCTGA 1 77.7572712132 -0.109076927344 9.38282105949e-05 chr1_+_82739468_82739477|77.7572712132|-0.109076927344 6.13224267612678e-05 IN ENSMUST00000078332 Novel NA Excluded E1 6 0.000297703088602696 9.1642391141138e-06 0.000729135508722678 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_86172123_86172148 ENSMUST00000123618.7 0 chr1:86170002+86173556 0 25 AAGGAGAATGGACCTAATAGCAAAG 1 78.172385861 2.12527588498 3.13082892944e-12 chr1_+_86172123_86172148|78.172385861|2.12527588498 1.93012272831083e-12 IN ENSMUST00000123618 Annotated NA Included I1 1 5.54109499244974e-62 3.05772756779749e-60 -7.62154662968773e-63 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_87348119_87348135 ENSMUST00000027475.14 36 chr1:87334334+87354403 36 16 GTGAACGTATAAAGAG 1 83.9223262247 -0.211149999558 1.82344591648e-08 chr1_+_87348119_87348135|83.9223262247|-0.211149999558 4.35904301543388e-09 IN ENSMUST00000027475 Novel NA Excluded E1 6 -0.000100544068591117 -0.000651568276019958 -0.00047930835805792 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_87837309_87837333 ENSMUST00000177757.1 0 chr1:87834627+87840791 0 24 CTTTCTAGGAGAGCTCACATCCAG 1 87.3932274406 2.72128571367 2.17994511331e-11 chr1_+_87837309_87837333|87.3932274406|2.72128571367 3.61677354732137e-12 IN ENSMUST00000177757 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_87844111_87844121 ENSMUST00000077772.11 0 chr1:87840847+87844914,chr1:87840847+87844913,chr1:87840847+87844868 0 10 CAAAAGAAAG 1 86.6612611648 1.2402142599 0.00381406812516 chr1_+_87844111_87844121|86.6612611648|1.2402142599 0.000666909660163362 IN ENSMUST00000077772 Annotated NA FALSE FALSE TRUE FALSE FALSE FALSE chr1_+_89610283_89610295 ENSMUST00000027521.14 84 chr1:89609583+89627760 84 12 ATATGGACGCAG 1 86.8418703907 4.48468756862 4.2284283801e-06 chr1_+_89610283_89610295|86.8418703907|4.48468756862 7.28893351564786e-07 IN ENSMUST00000027521 Annotated NA Neuronal N2 8 0.0748912624273817 0.0247578925724393 -0.0617417517499166 TRUE TRUE TRUE 10.5 1 10.5 1 TRUE FALSE FALSE chr1_+_91073323_91073341 ENSMUST00000068116.12 4 chr1:91068649+91084945,chr1:91068649+91100576 2,2 18 ATCTATCAAGTCCAGAAG 1 82.1955418213 4.02159089273 9.25069798541e-10 chr1_+_91073323_91073341|82.1955418213|4.02159089273 2.90307000661016e-10 IN ENSMUST00000068116 Annotated NA Excluded E3 2 0.00790568778295141 -0.0649860641503679 0.033379648393259 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_91156917_91156940 ENSMUST00000094698.1 0 chr1:91156838+91157063 0 23 CTAATGAAAGACGAAGCATGCAG 1 83.7067759672 1.43722223228 2.81374923361e-12 chr1_+_91156917_91156940|83.7067759672|1.43722223228 6.94111434995648e-13 IN ENSMUST00000094698 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_+_91262266_91262296 ENSMUST00000188576.1 0 chr1:91254393+91265217 0 30 AGGTTGCAGAACTTGAAGCTAATTTACCTT 1 83.1408486452 2.9451470489 0 chr1_+_91262266_91262296|83.1408486452|2.9451470489 0 IN ENSMUST00000188576 Annotated NA Included I1 1 -6.69844358158959e-116 -8.3862067958451e-117 -1.0773978567646e-115 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_91275218_91275236 ENSMUST00000188576.1 1 chr1:91265283+91275249 1 18 ATTTTTTTGTTTTGTTTT 1 73.1893873315 1.17331817928 5.65250957152e-10 chr1_+_91275218_91275236|73.1893873315|1.17331817928 5.31994670538438e-10 IN ENSMUST00000188576 Novel NA Excluded E2 3 0.00525041182829223 0.00105204635054077 0.00279209981689871 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_91518293_91518314 ENSMUST00000189341.6 0 chr1:91516176+91519577,chr1:91507568+91519577 0 21 GTGACTCCCCCAGCGATGCAG 1 89.5632312347 1.7326400274 7.67613528296e-10 chr1_+_91518293_91518314|89.5632312347|1.7326400274 1.18720699937569e-10 IN ENSMUST00000189341 Annotated Alt5 Included I2 10 -0.00105985786582199 -0.00200454495981585 -0.00233792499832785 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_93489127_93489154 ENSMUST00000131175.8 0 chr1:93479180+93491156,chr1:93479068+93491156,chr1:93479314+93491156 0 27 ACAGGAAAATCAAGAAAGATGTCTAAG 1 81.5017966147 1.36390323213 0 chr1_+_93489127_93489154|81.5017966147|1.36390323213 0 IN ENSMUST00000131175 Annotated Alt5 Excluded E3 2 7.39897372274118e-06 -0.00215206685926867 0.00449571260003305 TRUE FALSE FALSE FALSE FALSE FALSE chr1_+_9912155_9912173 ENSMUST00000052843.11 0 chr1:9912040+9915473 0 18 TTACAGACTGAAACTCAA 1 78.2328766589 2.85804540164 4.96365816227e-08 chr1_+_9912155_9912173|78.2328766589|2.85804540164 3.03308119731227e-08 IN ENSMUST00000052843 Annotated Alt5 FALSE TRUE TRUE FALSE FALSE FALSE chr1_-_119605227_119605255 ENSMUST00000052404.12 0 chr1:119600261-119607986,chr1:119600237-119607986 0 28 CCAGCACAACACAACCTGAAGATCTTGG 1 85.1976048268 1.32662498532 0 chr1_-_119605227_119605255|85.1976048268|1.32662498532 0 IN ENSMUST00000052404 Annotated NA Included I1 1 -1.59975183312478e-16 -1.43156826895051e-15 -9.22490475197545e-17 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_124693992_124694001 ENSMUST00000187286.1 1 chr1:124510297-124845718 1 9 GCACTAGGA 1 63.3881172111 0.00453846271221 0.00498549964731 chr1_-_124693992_124694001|63.3881172111|0.00453846271221 0.00498518935686154 IN ENSMUST00000187286 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_-_125960465_125960492 ENSMUST00000094609.9 24 chr1:125915021-125976925,chr1:125915021-125981382,chr1:125940237-125976925 17,1,6 27 GTAACCATGGGACATGTCATCTTACAG 1 88.0027965255 0.169193545657 0 chr1_-_125960465_125960492|88.0027965255|0.169193545657 0 IN ENSMUST00000094609 Novel NA Excluded E3 2 0.009028984552686 -0.00116346931137677 -0.00488974525232491 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_126455771_126455796 ENSMUST00000094609.9 23 chr1:126448517-126492547,chr1:126448517-126528681 13,10 25 CTTGCAGAGTTGGCTTTGCTGGCTG 1 80.9722604462 0.159379309108 0 chr1_-_126455771_126455796|80.9722604462|0.159379309108 0 IN ENSMUST00000094609 Novel NA Excluded E2 3 0.00494582447101051 0.00166533348782178 0.00501161877119253 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_128057981_128058000 ENSMUST00000127393.7 1 chr1:127999460-128091842 1 19 GTGTATGGTGGCTGATGAA 1 91.3624526781 1.85678262879 1.31250033064e-09 chr1_-_128057981_128058000|91.3624526781|1.85678262879 2.11471173905409e-10 IN ENSMUST00000127393 Annotated Alt3 Other O1 4 0.00010481746929299 0.0098629155776647 0.00432762811029469 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_130447618_130447639 ENSMUST00000027650.12 0 chr1:130440379-130448327 0 21 GTGGTGACCGTTATATATATG 1 85.5630700641 0.134999989942 1.80148163054e-09 chr1_-_130447618_130447639|85.5630700641|0.134999989942 3.49697271140315e-10 IN ENSMUST00000027650 Annotated Alt3 Included I3 5 0.00286214524433492 0.00602977977513804 -0.0128320251290188 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_130657462_130657479 ENSMUST00000027657.13 59 chr1:130657314-130661447 59 17 AGGTGGCTTTTGCAGAG 1 85.4217177087 -0.0157142847477 9.34960553423e-10 chr1_-_130657462_130657479|85.4217177087|-0.0157142847477 1.843432073656e-10 IN ENSMUST00000027657 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_-_131332116_131332141 ENSMUST00000097588.8 0 chr1:131325148-131333856,chr1:131325148-131332980 0 25 GCGAAGCTCAACTGTGAGGAAACAG 1 78.6586600605 2.82734484743 6.93045620892e-12 chr1_-_131332116_131332141|78.6586600605|2.82734484743 3.97148980368911e-12 IN ENSMUST00000097588 Annotated NA Included I1 1 -1.87427220767145e-22 5.91019064457403e-22 5.19877549336493e-22 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_131333856_131333884 ENSMUST00000097588.8 0 chr1:131332141-131336389 0 28 GTCAGCGGACAGACTGTAGTCTTGCCAG 1 93.7069199436 4.08153120428 0 chr1_-_131333856_131333884|93.7069199436|4.08153120428 0 IN ENSMUST00000097588 Annotated NA Included I1 1 3.24670062361049e-32 -5.77854309235237e-32 -8.98196778498174e-32 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_132040539_132040562 ENSMUST00000189227.1 0 chr1:132038973-132041857 0 23 GATACACCCTGAACTCTCATCAG 1 90.2733421024 2.71874075245 4.06004119213e-11 chr1_-_132040539_132040562|90.2733421024|2.71874075245 6.31339425183342e-12 IN ENSMUST00000189227 Annotated Alt5 Excluded E1 6 -0.00122592683475856 0.00139318480475518 0.00123039113978967 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_132389901_132389920 ENSMUST00000045473.15 2 chr1:132381181-132390976 2 19 CTCAAAGTCAGGAAGCCAG 1 83.7168232401 0.632782606894 1.38868472277e-10 chr1_-_132389901_132389920|83.7168232401|0.632782606894 3.4206193433306e-11 IN ENSMUST00000045473 Novel NA Excluded E3 2 -0.00990998489627791 0.0126035138443909 0.018924574705498 TRUE TRUE FALSE FALSE FALSE FALSE chr1_-_132593350_132593365 ENSMUST00000094569.10 0 chr1:132576417-132595483,chr1:132588310-132595483 0 15 CTACTCCAACTGCAG 1 73.9375811615 3.12926313281 6.66265950633e-06 chr1_-_132593350_132593365|73.9375811615|3.12926313281 6.09570842624585e-06 IN ENSMUST00000094569 Annotated NA Included I1 1 -5.88608956666821e-06 2.75989820186353e-05 1.35281090535327e-05 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr1_-_132637863_132637881 ENSMUST00000043189.13 1053 chr1:132637091-132642677 1053 18 CAAGCATTCAGAATGAGC 1 72.0368511874 3.69254549254 3.16276782542e-10 chr1_-_132637863_132637881|72.0368511874|3.69254549254 3.06264236193954e-10 IN ENSMUST00000043189 Annotated NA Neuro-Muscular NM5 7 0.0110641534291826 -0.0227981940577207 -0.0346589865112319 TRUE FALSE TRUE FALSE FALSE FALSE chr1_-_133609717_133609744 ENSMUST00000166915.7 0 chr1:133606579-133609907,chr1:133608959-133610163 0 27 AACCTTATCTTCAGATACTTGCAAAAT 1 76.0371849917 3.62696779399 0 chr1_-_133609717_133609744|76.0371849917|3.62696779399 0 IN ENSMUST00000166915 Annotated NA Included I1 1 -3.43537381219875e-135 -2.68487301610454e-136 -6.4978240617161e-135 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_133657388_133657416 ENSMUST00000027736.12 85 chr1:133654032-133661236,chr1:133654438-133661236,chr1:133655398-133661236,chr1:133655398-133661255 5,1,43,36 28 AGACTCAGAGAAGATTTTCAAGTCAGAG 1 81.5906338424 1.60934375809 0 chr1_-_133657388_133657416|81.5906338424|1.60934375809 0 IN ENSMUST00000027736 Annotated NA Excluded E1 6 -6.07927557655522e-05 -0.00164358952032341 -0.00427971061747634 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_134311528_134311555 ENSMUST00000168515.7 0 chr1:134309751-134312056 0 27 GACAGTGAGGAGGGCAGCTGGGCCCAG 1 81.8723372785 4.82838704822 0 chr1_-_134311528_134311555|81.8723372785|4.82838704822 0 IN ENSMUST00000168515 Annotated NA Neuronal N2 8 0.0713971478613949 0.062303119016967 -0.0177619718734926 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr1_-_134782150_134782167 ENSMUST00000045665.12 0 chr1:134777459-134834434 0 17 CATGAAAGACTTTCTAG 1 85.892834682 3.01619046075 3.31515362462e-06 chr1_-_134782150_134782167|85.892834682|3.01619046075 6.21692685887076e-07 IN ENSMUST00000045665 Annotated Alt3 Neuro-Muscular NM5 7 0.0418638749858095 -0.0179932604601884 -0.0417443929851051 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_135457860_135457869 ENSMUST00000190298.6 709 chr1:135455330-135458655 709 9 GTTTATGAG 1 94.2668741446 3.41369230014 4.93514284199e-05 chr1_-_135457860_135457869|94.2668741446|3.41369230014 1.01929033962112e-05 IN ENSMUST00000190298 Annotated NA Neuro-Muscular NM2 9 0.0551051142941027 -0.0427821337484528 -0.0152958893606232 TRUE TRUE TRUE 13.5 1 FALSE TRUE FALSE chr1_-_135463914_135463938 ENSMUST00000040599.14 0 chr1:135463799-135464705 0 24 GCTGAGGAGAGGATGCAATCTGAG 1 79.8909529072 3.7949286674 3.11928260999e-12 chr1_-_135463914_135463938|79.8909529072|3.7949286674 1.46016532198701e-12 IN ENSMUST00000040599 Annotated NA Neuronal N2 8 0.0777464869551906 -0.0398340995087145 -0.0552911981802163 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE TRUE FALSE chr1_-_138115618_138115642 ENSMUST00000182283.7 0 chr1:138113779-138126302,chr1:138113779-138116953 0 24 CTACCACAACGAAGCAAACATGTG 1 81.3053051017 0.165642852762 1.11768372335e-11 chr1_-_138115618_138115642|81.3053051017|0.165642852762 4.08861833278706e-12 IN ENSMUST00000182283 Annotated NA Included I1 1 -1.18130447218893e-10 1.28722664657477e-10 -4.6087555429737e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_138126302_138126326 ENSMUST00000182283.7 0 chr1:138115642-138175014,chr1:138120166-138175014,chr1:138122584-138175014,chr1:138117025-138175014 0 24 GGCAAACACCTACACCCAGTGATG 1 91.0221574133 -0.790999990489 1.86169302197e-10 chr1_-_138126302_138126326|91.0221574133|-0.790999990489 2.95609092759719e-11 IN ENSMUST00000182283 Annotated Alt3 Included I2 10 0.00113728233499124 0.00448236851785114 -0.000851138906754115 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_140100460_140100487 ENSMUST00000192880.5 15 chr1:140099046-140100807 15 27 GGATCTGTGTATGACTCAGTTTGGAAG 1 86.1259590355 -0.422225815514 0 chr1_-_140100460_140100487|86.1259590355|-0.422225815514 0 IN ENSMUST00000192880 Novel NA Excluded E1 6 0.000285702557039396 0.000652314433961892 -0.00216952953122573 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_140110790_140110793 ENSMUST00000111976.8 1 chr1:140108940-140112432 1 3 CAT 1 60.0856027654 None 0.191612706057 chr1_-_140110790_140110793|60.0856027654|None 0.19161213756482 RESCUED ENSMUST00000111976 Novel NA Excluded E4 11 0.000508980253889392 -0.00040403159149421 0.000231910354268791 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_154450845_154450857 ENSMUST00000187541.6 0 chr1:154448942-154452227,chr1:154448942-154465718 0 12 GAACGCTTTGGG 1 73.8544753678 2.94124995888 0.000194828561573 chr1_-_154450845_154450857|73.8544753678|2.94124995888 0.000178893771212718 IN ENSMUST00000187541 Annotated NA Included I1 1 3.01591496148641e-05 -0.00014338243294453 -6.32679593320635e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_156081391_156081413 ENSMUST00000015628.3 0 chr1:156080171-156087788 0 22 GTCATCGCTCCCTTCACTGAAT 1 87.0933974812 1.32315384002 4.31498392572e-10 chr1_-_156081391_156081413|87.0933974812|1.32315384002 7.3022365931763e-11 IN ENSMUST00000015628 Annotated NA Included I1 1 -2.41341745388615e-06 1.291122094071e-05 5.1990633653137e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_156273421_156273429 ENSMUST00000121146.9 103 chr1:156271399-156276561 103 8 TATTAAAG 1 73.7750639322 0.0380833322803 0.000306916821135 chr1_-_156273421_156273429|73.7750639322|0.0380833322803 0.000282754827658716 IN ENSMUST00000121146 Novel NA FALSE TRUE FALSE FALSE FALSE FALSE chr1_-_156901785_156901806 ENSMUST00000172057.7 3 chr1:156900636-156907638 3 21 GTTACGCCAGAAGAATACGCG 1 79.4950351107 4.44832001805 6.19682083425e-12 chr1_-_156901785_156901806|79.4950351107|4.44832001805 3.10218517540761e-12 IN ENSMUST00000172057 Novel Alt5 Excluded E1 6 -0.000456341741213414 -0.000711629872615563 -0.00198072747971169 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_161845559_161845580 ENSMUST00000192570.1 145 chr1:161845358-161847204 145 21 ATGTTCATCAAGTACATAAAG 1 85.0111605867 6.24484002113 1.61737290227e-12 chr1_-_161845559_161845580|85.0111605867|6.24484002113 3.3451019731956e-13 IN ENSMUST00000192570 Annotated NA Neuronal N2 8 0.0546013244353626 -0.0160742174522452 -0.0120096180411218 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr1_-_162075774_162075786 ENSMUST00000159763.7 1692 chr1:162019992-162084032 1692 12 GGGAGCAACAAA 1 77.4319260142 3.00356248394 1.49066380259e-05 chr1_-_162075774_162075786|77.4319260142|3.00356248394 1.01702494492706e-05 IN ENSMUST00000159763 Novel NA Neuronal N2 8 0.0764783991010284 -0.0265850366614353 -0.0325292469828444 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr1_-_164303903_164303924 ENSMUST00000120447.7 77 chr1:164302720-164306438 77 21 GGAAACAAGAAATGATGAAAG 1 85.1672903744 0.437039999776 3.28004290395e-12 chr1_-_164303903_164303924|85.1672903744|0.437039999776 6.65911770170169e-13 IN ENSMUST00000120447 Annotated Alt3 Excluded E2 3 0.000656883124114237 0.00214090499041356 0.00577943737264764 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_16463185_16463194 ENSMUST00000151888.7 1 chr1:16440458-16509341 1 9 ATGTTTTCG 1 68.6656285866 4.76023080716 0.00102571657183 chr1_-_16463185_16463194|68.6656285866|4.76023080716 0.00102181698532267 IN ENSMUST00000151888 Novel Alt3 Excluded E1 6 0.000411085973024901 0.000298206255239611 0.00155176273049037 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_165182051_165182081 ENSMUST00000043338.9 0 chr1:165179295-165183826 0 30 GTATAGCCTTTCCTATATACCGTATGCAAG 1 91.7934841398 3.67132355426 0 chr1_-_165182051_165182081|91.7934841398|3.67132355426 0 IN ENSMUST00000043338 Annotated NA Included I1 1 1.49869378571931e-47 7.28223740954616e-48 1.41529308587214e-47 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_165411698_165411708 ENSMUST00000027856.12 47 chr1:165411599-165420110 47 10 AATGTCTGAG 1 72.8182597136 0.38585714171 3.16532907491e-05 chr1_-_165411698_165411708|72.8182597136|0.38585714171 3.01178983334038e-05 IN ENSMUST00000027856 Novel NA Excluded E1 6 0.000393789341781888 6.58838173014817e-05 0.000698329964010805 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_16656295_16656312 ENSMUST00000188987.6 73 chr1:16648007-16656821 73 17 GAGTTATCTAGTGCCAG 1 77.7947672214 0.107571421457 1.99929672817e-09 chr1_-_16656295_16656312|77.7947672214|0.107571421457 1.29999411235815e-09 IN ENSMUST00000188987 Novel Alt5 Excluded E1 6 0.000241112183878084 7.82585175740829e-05 0.000444384511056606 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_170969473_170969494 ENSMUST00000027966.13 0 chr1:170968234-170975900 0 21 ATCTTGCTGCTGGGACTCATG 1 90.4320268668 0.701359989564 1.73736225406e-09 chr1_-_170969473_170969494|90.4320268668|0.701359989564 2.7100899302468e-10 IN ENSMUST00000027966 Annotated Alt3 Included I1 1 -0.00174734209022452 0.00583595465390433 -0.00534609958149333 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_171058585_171058606 ENSMUST00000164044.7 0 chr1:171057948-171059268,chr1:171057945-171059268 0 21 CTTTTGCAGACAGGCAGAGTG 1 89.0588305119 0.424680005684 2.94448909699e-10 chr1_-_171058585_171058606|89.0588305119|0.424680005684 4.57547333354569e-11 IN ENSMUST00000164044 Annotated NA Included I1 1 1.62894134327243e-49 -7.68606913664812e-48 6.05607961947833e-48 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_171230066_171230087 ENSMUST00000079957.11 0 chr1:171229927-171230995,chr1:171229927-171230921 0 21 AAAGCAGATGCTGTCTACACG 1 81.839398796 1.76060001038 2.20325091504e-10 chr1_-_171230066_171230087|81.839398796|1.76060001038 7.346812047615e-11 IN ENSMUST00000079957 Annotated NA Included I1 1 -3.25034895229254e-95 -4.28846284757899e-95 -3.99051977077471e-95 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_177766571_177766584 ENSMUST00000016105.8 89 chr1:177764297-177767654 89 13 AGAAGAAAAGTAG 1 74.1674600042 0.197058829862 1.94413568577e-07 chr1_-_177766571_177766584|74.1674600042|0.197058829862 1.75988458472887e-07 IN ENSMUST00000016105 Novel NA Excluded E1 6 0.000378657053794319 0.000188568887982027 -1.35824389562315e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_180439105_180439114 ENSMUST00000211561.1 1458 chr1:180438363-180442543 1458 9 TCTCCCAAG 1 84.3617476772 2.17069234241 6.20912114183e-05 chr1_-_180439105_180439114|84.3617476772|2.17069234241 1.39601766950825e-05 IN ENSMUST00000211561 Annotated NA Neuro-Muscular NM1 12 0.0743767086573492 -0.162777878573652 -0.0838887601784158 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr1_-_181931173_181931185 ENSMUST00000078719.12 507 chr1:181930762-181935659,chr1:181930762-181956393 173,334 12 TGTTCTATTTAG 1 89.7168060458 3.4684374705 1.13644572608e-06 chr1_-_181931173_181931185|89.7168060458|3.4684374705 1.75761128429208e-07 IN ENSMUST00000078719 Annotated NA Neuronal N4 13 0.0313148181090205 0.00807225617304925 0.0508215740032295 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr1_-_182482535_182482547 ENSMUST00000068505.9 0 chr1:182481658-182484202 0 12 GTTCCAGAGGAG 1 89.3316951099 2.87556257052 0.00015066915882 chr1_-_182482535_182482547|89.3316951099|2.87556257052 2.33325830706343e-05 IN ENSMUST00000068505 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_183107117_183107147 ENSMUST00000171366.6 0 chr1:183100040-183135354 0 30 GCCGTCCAGACCTTTCAAGTTCCCGAGAAG 1 84.4569378198 2.6742940933 0 chr1_-_183107117_183107147|84.4569378198|2.6742940933 0 IN ENSMUST00000171366 Annotated NA Included I1 1 -2.03885400058689e-47 9.63727498368441e-48 3.91756349772034e-47 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_184906511_184906514 ENSMUST00000027929.9 1 chr1:184905654-184907082 1 3 TAG 1 69.54585256 -0.258142854486 0.0830786726868 chr1_-_184906511_184906514|69.54585256|-0.258142854486 0.0825066524022261 IN ENSMUST00000027929 Novel NA Excluded E4 11 0.00235779036153197 0.0111470113875189 0.00721250350547574 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_185310221_185310230 ENSMUST00000027921.10 1 chr1:185303401-185315893 1 9 TATGGAAGT 1 67.7910669938 None 0.000185934303998 chr1_-_185310221_185310230|67.7910669938|None 0.000185552799731092 IN ENSMUST00000027921 Novel NA Excluded E1 6 -0.00111493852210717 0.00107223890039991 0.00245041998921433 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_193194519_193194549 ENSMUST00000192020.5 0 chr1:193194415-193195058,chr1:193194384-193194824 0 30 GACATCATTCAACTCTCGGAATACCTCAAA 1 81.8000038187 2.25114706268 0 chr1_-_193194519_193194549|81.8000038187|2.25114706268 0 IN ENSMUST00000192020 Annotated Alt5 Included I2 10 -0.00345932625572463 -0.0089241532735358 -0.00915542470882442 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_193194824_193194849 ENSMUST00000192020.5 0 chr1:193194415-193195058,chr1:193194549-193197677,chr1:193194549-193195072 0 25 ATGTGGAGTTGCTGTCCTAGACAAG 1 89.229737732 1.79344828408 4.26325641456e-13 chr1_-_193194824_193194849|89.229737732|1.79344828408 6.60582699651968e-14 IN ENSMUST00000192020 Annotated Alt5_3 Excluded E3 2 -0.00259708069807796 -0.000831637466062032 -0.00441953627693024 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_195112373_195112397 ENSMUST00000193094.5 0 chr1:195111155-195114655 0 24 GCTCAATCAGTGGTCTAATTGTTG 1 89.9762052265 0.270464277627 1.23350218928e-11 chr1_-_195112373_195112397|89.9762052265|0.270464277627 1.91047178077497e-12 IN ENSMUST00000193094 Annotated NA Included I1 1 -7.1975604879328e-118 -1.34534859390123e-118 -1.41217631490346e-117 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_195150922_195150946 ENSMUST00000082321.8 0 chr1:195150044-195151567,chr1:195139798-195176552,chr1:195150044-195151571 0 24 GGTCAACTATTCCTCTTATTTGTG 1 79.4949315306 0.56228569895 5.31130694981e-12 chr1_-_195150922_195150946|79.4949315306|0.56228569895 2.65887312167479e-12 IN ENSMUST00000082321 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_-_21466382_21466409 ENSMUST00000029667.12 0 chr1:21461607-21469469,chr1:21405924-21469469,chr1:21457624-21469469 0 27 GAAAGAACAAGGGGAGGCATCAAGCAG 1 72.3583293947 3.95351607082 0 chr1_-_21466382_21466409|72.3583293947|3.95351607082 0 IN ENSMUST00000029667 Annotated Alt3 Neuronal N5 14 0.0455156896593129 0.0669662818107206 -0.0123558848696486 TRUE TRUE TRUE 15.5 1 FALSE FALSE FALSE chr1_-_22393918_22393942 ENSMUST00000081544.12 1 chr1:22379540-22397450 1 24 AAAAATATAACTCTTCCACTAAAG 1 71.418615898 2.97342859368 0 chr1_-_22393918_22393942|71.418615898|2.97342859368 0 IN ENSMUST00000081544 Novel NA Excluded E1 6 -0.000140711539909176 0.000668521729520784 0.000487896002941666 TRUE TRUE FALSE 15.5 -1 FALSE FALSE FALSE chr1_-_22393918_22393948 ENSMUST00000081544.12 30 chr1:22379540-22397450 30 30 AACAAGAAAAATATAACTCTTCCACTAAAG 1 80.6383180962 3.0478235619 0 chr1_-_22393918_22393948|80.6383180962|3.0478235619 0 IN ENSMUST00000081544 Missing in GENCODE NA Excluded E2 3 0.000373775298794858 0.00313905894162666 -0.00588491893678911 TRUE TRUE FALSE 15.5 -1 FALSE FALSE FALSE chr1_-_22594092_22594104 ENSMUST00000097808.6 0 chr1:22592309-22596364,chr1:22574748-22596370,chr1:22538623-22596370,chr1:22593044-22596370,chr1:22538623-22596364 0 12 GAGGACAAAGTG 1 77.9410914232 5.12050014734 0.000196914315085 chr1_-_22594092_22594104|77.9410914232|5.12050014734 0.000125468963240949 IN ENSMUST00000097808 Annotated NA Included I1 1 1.45317175012349e-05 -6.88219942953884e-05 -3.03292390307764e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_24300592_24300619 ENSMUST00000144297.1 0 chr1:24296813-24301274 0 27 GGTCCAAAAGGTGATCCTGGCCCAGTG 1 83.4911911829 2.10700000606 0 chr1_-_24300592_24300619|83.4911911829|2.10700000606 0 IN ENSMUST00000144297 Annotated NA Included I1 1 2.26917264623797e-07 -9.83910197155678e-07 -5.3564482845209e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_36176775_36176799 ENSMUST00000174266.7 156 chr1:36176327-36177517 156 24 GAATGTCCTCCAAGGAAATCTATG 1 82.0045400554 4.03699993661 0 chr1_-_36176775_36176799|82.0045400554|4.03699993661 0 IN ENSMUST00000174266 Annotated NA Neuro-Muscular NM5 7 0.0231347709950602 -0.0143304349365237 -0.0357452708763735 TRUE TRUE TRUE 10.5 1 FALSE FALSE FALSE chr1_-_38128305_38128315 ENSMUST00000027251.11 91 chr1:38108467-38129461 91 10 GTCCTTTGAG 1 86.8824392762 0.154000009809 7.81535364606e-05 chr1_-_38128305_38128315|86.8824392762|0.154000009809 1.34305306812577e-05 IN ENSMUST00000027251 Missing in GENCODE Alt3 Excluded E3 2 0.000776711213825383 0.000436935862038614 0.00644960611625731 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_42652561_42652589 ENSMUST00000181725.7 63 chr1:42648456-42663555,chr1:42648456-42666840 49,14 28 TCTCTGTGGATGGGTTCATTTCTTTAAG 1 89.1032318624 -0.0474375000922 0 chr1_-_42652561_42652589|89.1032318624|-0.0474375000922 0 IN ENSMUST00000181725 Annotated NA Excluded E1 6 -0.00149727043203661 0.0017887521762082 0.000458613502001946 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_43807349_43807377 ENSMUST00000126008.7 0 chr1:43805674-43816875,chr1:43805674-43827614,chr1:43805674-43827705,chr1:43780169-43827614,chr1:43805689-43827614,chr1:43805689-43826736 0 28 CTGTTTGGGGCAACTTTGTTAACATGAG 1 87.3339450776 2.13368751243 0 chr1_-_43807349_43807377|87.3339450776|2.13368751243 0 IN ENSMUST00000126008 Annotated NA Included I1 1 0.000235837661188877 -5.63907657523799e-05 0.000150402774275065 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_44091182_44091212 ENSMUST00000027215.11 223 chr1:44088527-44091360,chr1:44088527-44102327 222,1 30 TTAGTTTTCATGGAGATGAATGTTGACATC 1 83.8422933083 0.926823538673 0 chr1_-_44091182_44091212|83.8422933083|0.926823538673 0 IN ENSMUST00000027215 Annotated NA Excluded E2 3 0.00947565511791339 0.00268824792987143 0.0157363148524226 TRUE FALSE TRUE FALSE FALSE FALSE chr1_-_45438869_45438883 ENSMUST00000086430.4 0 chr1:45437496-45442646 0 14 GTAGAGGAAGAAAG 1 92.062619853 2.83177781105 1.91180070959e-05 chr1_-_45438869_45438883|92.062619853|2.83177781105 3.20583387758422e-06 IN ENSMUST00000086430 Annotated NA Included I1 1 -4.56256444004798e-49 -7.95093918914912e-50 -1.6610935438794e-48 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_51786572_51786578 ENSMUST00000046390.13 378 chr1:51784541-51793639 378 6 AATGCA 1 76.8063020087 3.22239999771 0.00862954617915 chr1_-_51786572_51786578|76.8063020087|3.22239999771 0.00634746663698704 IN ENSMUST00000046390 Missing in GENCODE NA Neuronal N6 15 0.00823871747347361 -0.00361047965329374 0.0454753431315058 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_52658698_52658723 ENSMUST00000156876.7 911 chr1:52658545-52660806 911 25 TTGCACATAGGAAAGGAGATGAAAG 1 81.126456738 2.3877586021 0 chr1_-_52658698_52658723|81.126456738|2.3877586021 0 IN ENSMUST00000156876 Annotated NA Neuronal N2 8 0.0548758984419166 0.029158138467802 -0.0447961007819324 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr1_-_57393669_57393691 ENSMUST00000162686.7 25 chr1:57393487-57394046 25 22 GAAGAACTCCTTCACTGGGAAG 1 73.6576731144 -0.261423072276 1.18349774425e-13 chr1_-_57393669_57393691|73.6576731144|-0.261423072276 1.09579012530503e-13 IN ENSMUST00000162686 Missing in GENCODE NA Excluded E1 6 -0.000950606217128592 -0.00224350993117851 -0.00408143872433193 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_57393669_57393694 ENSMUST00000162686.7 21 chr1:57393487-57394046 21 25 TAGGAAGAACTCCTTCACTGGGAAG 1 74.7394295007 -0.0942758592809 0 chr1_-_57393669_57393694|74.7394295007|-0.0942758592809 0 IN ENSMUST00000162686 Annotated Alt3 Excluded E2 3 -0.0029795939139523 -0.0021908563461999 -0.00652971160735589 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_59117330_59117341 ENSMUST00000094917.9 0 chr1:59115929-59117974,chr1:59116904-59117974 0 11 TGCTATCCAAG 1 73.5953178741 1.21306666856 0.00025149975969 chr1_-_59117330_59117341|73.5953178741|1.21306666856 0.000233360902804125 IN ENSMUST00000094917 Annotated NA Included I1 1 -3.13672538949669e-29 3.83124957208508e-28 9.52783376905543e-29 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_65030668_65030688 ENSMUST00000162800.7 1 chr1:65025730-65032585 1 20 TACCCAGTGATATCAGGAAA 1 79.9670152518 0.17041666992 2.42685871399e-11 chr1_-_65030668_65030688|79.9670152518|0.17041666992 1.12132525487141e-11 IN ENSMUST00000162800 Novel Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr1_-_65178989_65179016 ENSMUST00000169032.7 4 chr1:65175368-65186304 4 27 CTTGTGTGTACGCGCGGGTGTGAGCCG 1 81.5469230261 -0.256483869507 0 chr1_-_65178989_65179016|81.5469230261|-0.256483869507 0 IN ENSMUST00000169032 Novel NA Included I2 10 0.00451608804107121 0.0211714708341289 0.00128757501303327 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_66934245_66934273 ENSMUST00000186346.1 73 chr1:66930329-66934517 73 28 ATCGAGTTCTCTAAGGAGCAACAGGAGG 1 87.554294548 3.43903120887 0 chr1_-_66934245_66934273|87.554294548|3.43903120887 0 IN ENSMUST00000186346 Annotated NA Neuronal N5 14 -0.0172202061807068 0.0736562818998841 0.0300894019828283 TRUE FALSE TRUE FALSE FALSE FALSE chr1_-_66934517_66934542 ENSMUST00000186202.6 0 chr1:66934273-66944791,chr1:66934273-66935275,chr1:66930329-66935275,chr1:66930329-66935490 0 25 TCCTTCAGTGCTGACCAGATTGCCG 1 82.4954408341 3.03531033726 8.64197602368e-13 chr1_-_66934517_66934542|82.4954408341|3.03531033726 2.57904808620424e-13 IN ENSMUST00000186202 Annotated NA Included I1 1 -7.92895056623748e-08 1.43722263266506e-08 -3.2357095827094e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_73936331_73936355 ENSMUST00000187584.6 1 chr1:73928110-73937224 1 24 TTGCCAGAAGACTGATCCAGCCAG 1 88.7862766543 1.35328573281 0 chr1_-_73936331_73936355|88.7862766543|1.35328573281 0 IN ENSMUST00000187584 Annotated NA Excluded E2 3 -0.00209320131602208 0.00100231916810025 0.00931119564320384 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_75142057_75142071 ENSMUST00000189809.1 1 chr1:75141503-75142642 1 14 TTCTCCCACCTACG 1 83.2228495841 0.20977778443 1.631269686e-08 chr1_-_75142057_75142071|83.2228495841|0.20977778443 4.33093205742807e-09 IN ENSMUST00000189809 Novel Alt5 Excluded E2 3 3.20445077237744e-06 0.00147829886754195 0.0012691170710358 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_75311408_75311426 ENSMUST00000066668.13 57 chr1:75309466-75311791 57 18 AAGGAAGATTCAGGACTG 1 78.8238358465 0.117818177233 1.30910393636e-10 chr1_-_75311408_75311426|78.8238358465|0.117818177233 7.31051885694001e-11 IN ENSMUST00000066668 Novel NA Excluded E1 6 0.000274625615518954 7.49995286829439e-05 0.000629923336349019 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_79729655_79729665 ENSMUST00000187005.6 10 chr1:79719274-79733799 10 10 ACCTATCCAG 2 76.7691167408 2.06314285951 5.40562265312e-05 chr1_-_79729655_79729665|76.7691167408|2.06314285951,chr1_-_79722213_79722223|76.7691167408|4.53800006211 0.500019963235033 RESCUED ENSMUST00000187005 Novel Alt5 Excluded E1 6 -1.14397244558636e-05 0.000631024311101804 -0.000738416314759508 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_79858010_79858039 ENSMUST00000027467.10 1 chr1:79821557-79858510 1 29 GGAATTGCGAGGCCGGTGAGTGACTCCAG 1 80.4542907259 0.274969697563 0 chr1_-_79858010_79858039|80.4542907259|0.274969697563 0 IN ENSMUST00000027467 Novel NA Excluded E1 6 0.000183945936252811 1.31863539220892e-05 0.000499005493301366 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_80522184_80522190 ENSMUST00000077946.11 566 chr1:80515635-80523715 566 6 GCTGTG 1 85.0709953771 3.6369999826 0.00766661582818 chr1_-_80522184_80522190|85.0709953771|3.6369999826 0.00157438106031249 IN ENSMUST00000077946 Annotated NA Neuro-Muscular NM4 16 0.0255087005803476 -0.0365157632063167 0.0149782006292052 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_84760685_84760688 ENSMUST00000027421.12 1 chr1:84759127-84760762 1 3 GTG 1 58.1218270168 0.317714288831 0.0945907856108 chr1_-_84760685_84760688|58.1218270168|0.317714288831 0.0945907468832768 IN ENSMUST00000027421 Novel NA Excluded E3 2 -0.000143912430257592 -0.00199623951014813 -0.00921298714311522 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_8676305_8676315 ENSMUST00000132064.7 3 chr1:8624881-8677806 3 10 ATCAGGATGG 1 72.2484999266 0.00328571030072 0.000197089410679 chr1_-_8676305_8676315|72.2484999266|0.00328571030072 0.000190067075813261 IN ENSMUST00000132064 Novel NA Excluded E1 6 0.00194322264181072 0.00153652107591684 -0.00597687018710164 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_90782216_90782228 ENSMUST00000056925.15 0 chr1:90782128-90782340 0 12 CTTGCTGCTACG 1 86.3760014775 4.38224998675 1.16824396986e-05 chr1_-_90782216_90782228|86.3760014775|4.38224998675 2.09285270147408e-06 IN ENSMUST00000056925 Annotated NA Included I1 1 -7.83787935307395e-18 1.44817853391208e-19 -3.97968294950416e-17 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_90794323_90794350 ENSMUST00000056925.15 0 chr1:90794220-90795011 0 27 GGTTCTCGAGGATTCCCAGGAGAGAAG 1 81.5203374586 3.18451609832 0 chr1_-_90794323_90794350|81.5203374586|3.18451609832 0 IN ENSMUST00000056925 Annotated NA Included I1 1 3.55976495648978e-13 -3.79344850017869e-13 2.4112242432465e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_92645181_92645208 ENSMUST00000053144.3 0 chr1:92644517-92645333 0 27 GAGCCAAGCCAATGCCAGAGGAAGCAG 1 88.0332490847 1.09425806734 0 chr1_-_92645181_92645208|88.0332490847|1.09425806734 0 IN ENSMUST00000053144 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr1_-_93026831_93026855 ENSMUST00000190723.6 390 chr1:93025735-93036845 390 24 CGTTTCCTTCGGAAATGACACTAG 1 67.994463849 2.76303573245 0 chr1_-_93026831_93026855|67.994463849|2.76303573245 0 IN ENSMUST00000190723 Annotated NA Other O1 4 0.0213946203626515 -0.0360837690600196 0.0253557785850282 TRUE FALSE TRUE FALSE FALSE FALSE chr1_-_93034545_93034572 ENSMUST00000190723.6 224 chr1:93025735-93036845 224 27 GCAGTTTCTTGATTCGGACATACCTAG 1 81.7877468362 4.4994839526 0 chr1_-_93034545_93034572|81.7877468362|4.4994839526 0 IN ENSMUST00000190723 Annotated NA Excluded E3 2 0.00377608643142313 -0.0270038101549609 0.00875611227786403 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_93065551_93065578 ENSMUST00000171796.7 1423 chr1:93064282-93066046 1423 27 CCAACACTGTGCCCGGAGGACCCAAAT 1 75.2368903545 2.52083868365 0 chr1_-_93065551_93065578|75.2368903545|2.52083868365 0 IN ENSMUST00000171796 Annotated NA Neuro-Muscular NM4 16 0.0171411718330057 0.00167283325236661 0.0864423454883351 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_93072307_93072325 ENSMUST00000171796.7 0 chr1:93068560-93073038,chr1:93039811-93077834 0 18 GACTCTGGACCCAACAAG 1 92.1123037903 3.58395451113 6.48433321482e-08 chr1_-_93072307_93072325|92.1123037903|3.58395451113 1.09096705003253e-08 IN ENSMUST00000171796 Annotated NA Included I1 1 -6.62005309632981e-05 -7.71386634402064e-05 0.000467437974658304 TRUE FALSE FALSE FALSE FALSE FALSE chr1_-_98040808_98040838 ENSMUST00000161661.1 10 chr1:98040313-98047701 10 30 AGCACTTTTTTTTTTCACAGACACCTCCAG 1 83.9372072372 -0.146705883829 0 chr1_-_98040808_98040838|83.9372072372|-0.146705883829 0 IN ENSMUST00000161661 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_+_104054835_104054859 ENSMUST00000111136.7 0 chr2:104053480+104059881 0 24 GTGAATTTCCAATTATTAGCCCAG 1 83.7606031098 3.91914284682 2.2641444275e-11 chr2_+_104054835_104054859|83.7606031098|3.91914284682 5.54123413820662e-12 IN ENSMUST00000111136 Annotated Alt3 Excluded E2 3 -0.000459703602028112 0.000351276998571081 -0.000340144037393279 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_104112707_104112734 ENSMUST00000168176.7 5 chr2:104110844+104113974 5 27 GCTAAGCTCCAAGACACAGACTGGCAG 1 74.9028098977 -0.0474516089645 0 chr2_+_104112707_104112734|74.9028098977|-0.0474516089645 0 IN ENSMUST00000168176 Novel NA Excluded E2 3 0.00888364529633986 0.00472095899899597 -0.00207414835807232 TRUE TRUE TRUE 14.5 1 14.5 1 FALSE FALSE FALSE chr2_+_113330852_113330863 ENSMUST00000099576.8 2 chr2:113327831+113363835 2 11 ATATAATGTTG 1 74.0161984827 0.201799999798 3.35168064527e-05 chr2_+_113330852_113330863|74.0161984827|0.201799999798 3.05567878950974e-05 IN ENSMUST00000099576 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_+_114020181_114020208 ENSMUST00000131299.7 0 chr2:114017033+114031193,chr2:114017033+114023228,chr2:114017033+114027707,chr2:114013897+114031193 0 27 GCAGAGGTGGGATTGCAGTTCACTAAG 1 87.9569105264 0.305967736388 0 chr2_+_114020181_114020208|87.9569105264|0.305967736388 0 IN ENSMUST00000131299 Annotated NA Included I2 10 0.00317609074992051 -0.0153418188486344 -0.00120747230228885 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_114020185_114020208 ENSMUST00000140041.1 0 chr2:114017033+114031193,chr2:114017033+114023228,chr2:114017033+114027707,chr2:114013897+114031193 0 23 AGGTGGGATTGCAGTTCACTAAG 1 82.8109113937 0.341666660099 8.76525518834e-11 chr2_+_114020185_114020208|82.8109113937|0.341666660099 2.48446818673642e-11 IN ENSMUST00000140041 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_+_116886759_116886789 ENSMUST00000123598.7 0 chr2:116886306+116887237 0 30 CTCTGTGAAGATCAAGCTCTCTGCATAAAG 1 78.7173899961 2.15708821557 0 chr2_+_116886759_116886789|78.7173899961|2.15708821557 0 IN ENSMUST00000123598 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr2_+_118775780_118775788 ENSMUST00000130293.7 0 chr2:118774692+118777714,chr2:118774697+118777714 0 8 GTGGCAAG 1 86.9821869447 0.918250031769 0.0448149737167 chr2_+_118775780_118775788|86.9821869447|0.918250031769 0.00764454129418213 IN ENSMUST00000130293 Annotated NA Included I1 1 6.31041079983386e-05 2.94920195832836e-06 0.00022319338133348 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_118786699_118786729 ENSMUST00000063975.9 0 chr2:118786375+118786870 0 30 GCAGGAACGCACTTTCCGGATGCCGAAGAG 1 85.0231413555 2.05597058925 0 chr2_+_118786699_118786729|85.0231413555|2.05597058925 0 IN ENSMUST00000063975 Annotated NA Included I1 1 2.16863826616508e-07 -1.32382316842395e-06 -5.36058676653604e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_119246059_119246086 ENSMUST00000028783.13 0 chr2:119245907+119246358 0 27 GAATCTCACCGAAAAGGCACCATCCAG 1 85.5911748069 1.14758063949 0 chr2_+_119246059_119246086|85.5911748069|1.14758063949 0 IN ENSMUST00000028783 Annotated NA Included I1 1 1.7184880929951e-11 7.8020477349644e-11 -9.43943246149512e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_120013300_120013318 ENSMUST00000066058.7 335 chr2:120013094+120013618 335 18 AACACAGACAGCTTCACA 1 80.7666193547 2.99663634734 2.85353962681e-11 chr2_+_120013300_120013318|80.7666193547|2.99663634734 1.14716014465444e-11 IN ENSMUST00000066058 Missing in GENCODE NA Neuro-Muscular NM1 12 0.0369212539188397 -0.0779922258023533 0.0358950830012142 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr2_+_120495235_120495247 ENSMUST00000124129.7 0 chr2:120494941+120495401,chr2:120494941+120495864 0 12 GTTCCCAAAGAG 1 81.7773888229 2.78293753005 2.64641065787e-05 chr2_+_120495235_120495247|81.7773888229|2.78293753005 8.9191811573075e-06 IN ENSMUST00000124129 Annotated Alt3 Other O2 21 -0.00507053938408709 -0.00583213154265301 0.0154929200205076 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_120498967_120498985 ENSMUST00000124129.7 107 chr2:120497014+120502102 107 18 AAAAAGAAAAAAAACAAG 1 87.8334430074 1.83404543454 2.87968759949e-10 chr2_+_120498967_120498985|87.8334430074|1.83404543454 4.66122695996773e-11 IN ENSMUST00000124129 Annotated NA FALSE FALSE TRUE FALSE FALSE FALSE chr2_+_122151646_122151675 ENSMUST00000102476.4 0 chr2:122151151+122152650 0 29 ATCGAGACATGTGATCAAGCATCATGATG 1 85.9678612253 0.655575749831 0 chr2_+_122151646_122151675|85.9678612253|0.655575749831 0 IN ENSMUST00000102476 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_124489984_124490012 ENSMUST00000103241.7 0 chr2:124400364+124653580,chr2:124298655+124506593 0 28 ATTCTACCAAGACAGAGCCATCTCCAAG 1 86.5073410866 0.940499995253 0 chr2_+_124489984_124490012|86.5073410866|0.940499995253 0 IN ENSMUST00000103241 Annotated NA Included I1 1 3.94497497874431e-05 -0.000187996543574636 -8.46656194611706e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_124663661_124663690 ENSMUST00000103240.8 12 chr2:124662359+124664020,chr2:124662371+124664020 6,6 29 CAACTCTTTAATCCTGGTTTAAGAATTAG 1 78.4955904038 0.818242424845 0 chr2_+_124663661_124663690|78.4955904038|0.818242424845 0 IN ENSMUST00000103240 Novel NA Excluded E2 3 0.000280553471807214 0.00159431965225855 0.00637424209171459 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_126160198_126160211 ENSMUST00000170908.7 16 chr2:126160028+126164726 16 13 GAACCCTTTCAAA 1 74.8719084912 0.174882354324 2.72470023654e-07 chr2_+_126160198_126160211|74.8719084912|0.174882354324 2.37168811700883e-07 IN ENSMUST00000170908 Novel NA Excluded E1 6 0.000295898743879517 3.24915259111292e-05 -0.000273683812848845 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_129204245_129204264 ENSMUST00000028880.9 1 chr2:129204155+129206366 1 19 GGCTGAAATCTCCTAGAAG 1 85.3364022055 3.52191306456 3.10933501169e-11 chr2_+_129204245_129204264|85.3364022055|3.52191306456 6.1899374514951e-12 IN ENSMUST00000028880 Novel NA Excluded E1 6 0.00100888220897411 0.000651339604208922 0.00191357313265772 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_129621202_129621227 ENSMUST00000161620.7 0 chr2:129618570+129627945,chr2:129593694+129630292 0 25 CCAAGGGGTCAACATCTTCCACACG 1 90.9690898583 1.78382762136 8.30091551052e-12 chr2_+_129621202_129621227|90.9690898583|1.78382762136 1.31539223957589e-12 IN ENSMUST00000161620 Annotated Alt5 Included I1 1 -0.000108639305720271 0.00187096283792967 0.00274591058060167 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_130509829_130509856 ENSMUST00000028769.12 944 chr2:130504335+130517730 944 27 GTAATTCTGACTCAAAAGACAGGAGAG 1 83.9119682114 2.37329033402 0 chr2_+_130509829_130509856|83.9119682114|2.37329033402 0 IN ENSMUST00000028769 Missing in GENCODE NA Neuro-Muscular NM4 16 0.0222572590906644 0.00250881794214113 0.0425721836595004 TRUE FALSE TRUE 14.5 1 FALSE FALSE FALSE chr2_+_132783326_132783355 ENSMUST00000028826.3 19 chr2:132781782+132785983 19 29 CTTCTTGAAGGAGATCCACAACTGTCTGT 1 75.7629047985 0.300606052363 0 chr2_+_132783326_132783355|75.7629047985|0.300606052363 0 IN ENSMUST00000028826 Novel NA Excluded E1 6 -0.000440040376033013 -0.000518236162456076 7.94277603558516e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_13581690_13581698 ENSMUST00000193675.1 2 chr2:13580683+13582472 2 8 ATGGACAG 1 74.9901279501 4.8410833627 0.000105911847867 chr2_+_13581690_13581698|74.9901279501|4.8410833627 9.14891087180347e-05 IN ENSMUST00000193675 Novel Alt5 Excluded E1 6 -0.000247917919138386 1.91623096279957e-05 -0.000892957987524905 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_136716018_136716036 ENSMUST00000028727.10 89 chr2:136713600+136756067 89 18 GACAATGTGATGAAGGAG 1 78.428643111 0.48813636529 2.41271891355e-09 chr2_+_136716018_136716036|78.428643111|0.48813636529 1.43204448299628e-09 IN ENSMUST00000028727 Novel NA Excluded E1 6 1.06497459575914e-05 -2.56663911380972e-05 -2.52842309698609e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_140199364_140199379 ENSMUST00000044825.4 2 chr2:140193643+140202865 2 15 AAAAAAATCGAGAAT 1 70.1189269112 1.54289473044 3.34803184066e-08 chr2_+_140199364_140199379|70.1189269112|1.54289473044 3.31459809599366e-08 IN ENSMUST00000044825 Novel NA Excluded E1 6 0.000363721750003687 -0.000139613332364483 0.000792980521851463 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_140825051_140825081 ENSMUST00000110067.7 0 chr2:140452686+141024024 0 30 CAAATGCCAGTCTTCTCGGAGGAGGAGGTG 1 87.3719589865 2.41094121644 0 chr2_+_140825051_140825081|87.3719589865|2.41094121644 0 IN ENSMUST00000110067 Annotated NA Included I1 1 -1.12911662281416e-07 6.92968281729799e-07 2.47348647737663e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_143940375_143940402 ENSMUST00000103172.3 67 chr2:143940028+143942126 67 27 CTTTACTGTTGAATGGCGTGATTTTAG 1 85.0892254806 0.674580649443 0 chr2_+_143940375_143940402|85.0892254806|0.674580649443 0 IN ENSMUST00000103172 Missing in GENCODE NA Excluded E1 6 -4.10895454167668e-05 -0.00050251370852804 0.000439317482317027 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_145591157_145591183 ENSMUST00000110007.7 0 chr2:145581046+145598340 0 26 TTCATTTACGATGAAAAAGTTTCTTG 1 89.7822686901 2.05040002416 3.83337805943e-12 chr2_+_145591157_145591183|89.7822686901|2.05040002416 5.92970117452296e-13 IN ENSMUST00000110007 Annotated NA Included I1 1 -8.64733600962543e-08 5.86327940602779e-07 1.23858434048508e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_145908590_145908615 ENSMUST00000165635.1 2 chr2:145903362+145911696 2 25 TAACTTGGATCCACTTACAGAAACT 1 73.9731782007 3.88493098909 0 chr2_+_145908590_145908615|73.9731782007|3.88493098909 0 IN ENSMUST00000165635 Annotated NA Included I2 10 -0.00187566882524474 0.00325554228637026 -0.00751528950163739 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_148674463_148674484 ENSMUST00000047177.3 1 chr2:148672835+148675281 1 21 GCACCTGCTCTCCTTTGTTGG 1 83.7471722192 0.298199994862 2.15027995409e-12 chr2_+_148674463_148674484|83.7471722192|0.298199994862 5.27244914394487e-13 IN ENSMUST00000047177 Novel Alt3 Excluded E1 6 0.000261910510122166 0.000265161468281163 0.000319753743325771 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_14968217_14968237 ENSMUST00000114723.8 17 chr2:14968075+14971561 17 20 CAAAGCAGAAGCAGAAGTCG 1 76.7949427207 5.42808337013 1.2299494756e-11 chr2_+_14968217_14968237|76.7949427207|5.42808337013 9.05842068021911e-12 IN ENSMUST00000114723 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_+_151501466_151501487 ENSMUST00000028949.15 1 chr2:151500789+151503013 1 21 CCCATATGTCCCATAGTTTTG 1 74.6875358538 -0.252079998367 1.95310434492e-12 chr2_+_151501466_151501487|74.6875358538|-0.252079998367 1.71929137593452e-12 IN ENSMUST00000028949 Novel NA Excluded E1 6 0.00201962225600191 0.00213158970030839 -0.000275491027590327 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_151502454_151502460 ENSMUST00000028949.15 7027 chr2:151500789+151503013 7027 6 GAGCAG 1 78.9130873947 2.74400006533 0.00210920843049 chr2_+_151502454_151502460|78.9130873947|2.74400006533 0.00116131220691762 IN ENSMUST00000028949 Annotated Alt5 Included I2 10 0.0108682077397926 -0.0157249091799603 -0.0128080077776849 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_153354649_153354652 ENSMUST00000227428.1 346 chr2:153352271+153357069 346 3 AAG 1 76.5132047579 2.4609999827 0.253551279718 chr2_+_153354649_153354652|76.5132047579|2.4609999827 0.192512349464441 RESCUED ENSMUST00000227428 Annotated NA Included I1 1 0.000479158870556771 0.00141050951033876 -0.00111172650385176 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_155243803_155243821 ENSMUST00000054912.14 76 chr2:155242806+155247770 76 18 ATTTATTTATTATCATAT 1 86.0530731483 0.334863645448 2.8092017601e-10 chr2_+_155243803_155243821|86.0530731483|0.334863645448 5.18545206773524e-11 IN ENSMUST00000054912 Novel NA Excluded E1 6 -3.05367293370358e-06 6.78589186651611e-06 4.78351211768874e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_155614467_155614495 ENSMUST00000092995.5 0 chr2:155614195+155615400 0 28 ACCGAGAGAATCAGTCCATGCTGATCAC 1 80.6741222956 4.93459368352 0 chr2_+_155614467_155614495|80.6741222956|4.93459368352 0 IN ENSMUST00000092995 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_+_155617523_155617547 ENSMUST00000092995.5 0 chr2:155615497+155617647 0 24 CAATTTCTGGCGACAAAGACAGGG 1 86.3849438956 1.93753572354 7.53885842641e-12 chr2_+_155617523_155617547|86.3849438956|1.93753572354 1.34947608643188e-12 IN ENSMUST00000092995 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_+_155970219_155970236 ENSMUST00000094421.10 0 chr2:155970156+155970712 0 17 GTGGACTCTCTCAGCAG 1 77.3832088248 1.48900000538 3.11410981446e-08 chr2_+_155970219_155970236|77.3832088248|1.48900000538 2.13788449165975e-08 IN ENSMUST00000094421 Annotated Alt5 Excluded E3 2 0.000470803121973327 0.00104997486874465 -0.00219868096195933 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_156015376_156015391 ENSMUST00000006035.12 602 chr2:156011406+156015988 602 15 TCCATGCTGTGGAGA 1 75.3780355496 4.42636845143 1.66000971857e-08 chr2_+_156015376_156015391|75.3780355496|4.42636845143 1.39528804066202e-08 IN ENSMUST00000006035 Annotated NA Neuronal N1 18 0.0776046178089794 0.0399506947076018 -0.00243110219222503 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE TRUE chr2_+_156067311_156067337 ENSMUST00000133511.7 0 chr2:156067132+156067454,chr2:156066866+156067746 0 26 GAACCTACGGAGATGCTGACTCTAAG 1 82.2647678771 2.10789998968 6.48370246381e-14 chr2_+_156067311_156067337|82.2647678771|2.10789998968 2.00950367457153e-14 IN ENSMUST00000133511 Annotated NA Included I1 1 -7.27209518761936e-11 3.10302925511273e-10 1.79003808470983e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_157458842_157458860 ENSMUST00000109533.7 696 chr2:157458633+157462709 696 18 GAGGAAGGTGGATGTCAG 1 78.4134513581 2.8373636197 2.30443220062e-10 chr2_+_157458842_157458860|78.4134513581|2.8373636197 1.37090117036109e-10 IN ENSMUST00000109533 Annotated NA Neuronal N1 18 0.066003974402122 0.0108898818916548 -0.0139813040192934 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr2_+_157561212_157561239 ENSMUST00000153739.8 40 chr2:157560260+157561541,chr2:157560535+157561541 32,8 27 GTGTTCCTGGAATGCTGCATTTACTGG 1 79.2566972238 2.56754837498 0 chr2_+_157561212_157561239|79.2566972238|2.56754837498 0 IN ENSMUST00000153739 Annotated Alt3 Excluded E2 3 -0.00092868000633174 -0.000244355419715662 0.00306326103262169 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_158438545_158438563 ENSMUST00000109486.8 15 chr2:158437476+158439528,chr2:158437476+158440769 14,1 18 TTTTATTCATGAGCTTGA 1 81.6169431963 0.559954544233 1.15392140287e-10 chr2_+_158438545_158438563|81.6169431963|0.559954544233 3.99835720088504e-11 IN ENSMUST00000109486 Novel NA Excluded E1 6 0.000365004026543948 -0.000260128502795314 0.00258085831612555 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_158449488_158449497 ENSMUST00000046274.11 460 chr2:158448449+158450176,chr2:158448449+158450188 291,169 9 GATCCACAG 1 78.4354793998 3.08361545893 2.55402643184e-05 chr2_+_158449488_158449497|78.4354793998|3.08361545893 1.51435608298778e-05 IN ENSMUST00000046274 Missing in GENCODE NA Neuronal N6 15 0.0184595831335215 0.00491502165838845 0.0154302866976973 TRUE FALSE TRUE FALSE FALSE FALSE chr2_+_160646607_160646632 ENSMUST00000109468.2 0 chr2:160646262+160670099 0 25 ATCGAAGCGGATTTCCGATTGAATG 1 89.3994710439 1.85720690879 2.11457518162e-11 chr2_+_160646607_160646632|89.3994710439|1.85720690879 3.27293747659496e-12 IN ENSMUST00000109468 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_164770366_164770394 ENSMUST00000088248.12 0 chr2:164770080+164771292 0 28 GCTACAGCAGGAACTGATGATCCTCATG 1 88.7204687429 3.70109380363 0 chr2_+_164770366_164770394|88.7204687429|3.70109380363 0 IN ENSMUST00000088248 Annotated NA Included I1 1 -3.39292904153691e-49 7.59299774943796e-50 -1.91089029474842e-48 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_164791557_164791568 ENSMUST00000172577.7 912 chr2:164786848+164791712,chr2:164786855+164791712 76,836 11 AGGAGCCTCAG 1 82.6293699466 2.38046666483 4.50945374075e-06 chr2_+_164791557_164791568|82.6293699466|2.38046666483 1.31654099322365e-06 IN ENSMUST00000172577 Annotated Alt5 Neuronal N1 18 0.0718590473895 0.0305439948572821 0.0400217341883254 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr2_+_164791557_164791573 ENSMUST00000056181.6 164 chr2:164786848+164791712,chr2:164786855+164791712 1,163 16 AGGAGCCTCAGGTAAG 1 82.4873615837 2.23229999617 4.39922587248e-09 chr2_+_164791557_164791573|82.4873615837|2.23229999617 1.3147886113174e-09 IN ENSMUST00000056181 Novel NA Neuronal N4 13 0.0352486818713502 0.0112643405262191 0.0383883287607247 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_164791557_164791578 ENSMUST00000172577.7 70 chr2:164786848+164791712,chr2:164786855+164791712 2,68 21 AGGAGCCTCAGGTAAGGTAAG 1 82.7804933612 1.90919999871 4.29167812399e-12 chr2_+_164791557_164791578|82.7804933612|1.90919999871 1.22246657241476e-12 IN ENSMUST00000172577 Novel NA Neuronal N4 13 0.0254760937296178 0.00553258624536493 0.0426779469813417 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_164976432_164976460 ENSMUST00000202479.3 0 chr2:164975938+164987110,chr2:164975938+164999198 0 28 CTGGTGGCTCGTACTACATGATTTCCAG 1 77.6533803394 5.00571874459 0 chr2_+_164976432_164976460|77.6533803394|5.00571874459 0 IN ENSMUST00000202479 Annotated Alt3 Excluded E3 2 0.00158016739705299 -0.00583696814945749 -0.00102361446340088 TRUE TRUE FALSE 15.5 -1 FALSE FALSE FALSE chr2_+_164996863_164996878 ENSMUST00000202223.3 1295 chr2:164996518+164997109 1295 15 GGAGTGGGAAAACTT 1 80.6273731288 4.09847375907 2.08092387766e-09 chr2_+_164996863_164996878|80.6273731288|4.09847375907 8.5721973963615e-10 IN ENSMUST00000202223 Annotated NA Included I2 10 0.000156458987457408 -0.00844957596763561 0.0184344612321496 TRUE TRUE TRUE 15.5 1 FALSE FALSE FALSE chr2_+_174084645_174084657 ENSMUST00000134876.7 310 chr2:174077189+174090620 310 12 GAGCTGGACGAG 1 70.0448325891 3.70137505606 3.12341820707e-06 chr2_+_174084645_174084657|70.0448325891|3.70137505606 3.09367139272876e-06 IN ENSMUST00000134876 Annotated NA Neuro-Muscular NM5 7 0.0120268909922497 -0.0216370500550894 0.00848868257044531 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_174328107_174328131 ENSMUST00000156623.7 0 chr2:174285477+174334211,chr2:174327941+174328366,chr2:174288586+174334211,chr2:174300217+174334211,chr2:174300525+174334211,chr2:174327941+174334211 0 24 AGCTAACCCAAGGAGCACCTAAGG 1 71.1936053216 1.15478568192 1.41042733048e-12 chr2_+_174328107_174328131|71.1936053216|1.15478568192 1.38300482177556e-12 IN ENSMUST00000156623 Annotated Alt5_3 Excluded E1 6 0.00198440343008686 0.000918582866260346 0.00278582276720703 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_180073218_180073233 ENSMUST00000108901.7 3 chr2:180071886+180078618 3 15 CAGTTCAAGTCCTTG 1 82.3565398753 0.450578958384 2.44217513989e-08 chr2_+_180073218_180073233|82.3565398753|0.450578958384 7.45956418857219e-09 IN ENSMUST00000108901 Novel Alt5 Excluded E1 6 0.000999834746909908 0.000843975406547068 0.00032325891072306 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_180603101_180603125 ENSMUST00000132527.8 0 chr2:180602677+180603356 0 24 GGCAAAGGCCTCCCTGGACCTCCT 1 82.2519239406 1.97689286992 2.3128166049e-12 chr2_+_180603101_180603125|82.2519239406|1.97689286992 7.18980430747251e-13 IN ENSMUST00000132527 Annotated NA Included I1 1 -1.51785188723468e-21 2.48974676930491e-21 4.23362400527084e-21 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_180740712_180740742 ENSMUST00000094218.3 0 chr2:180740581+180741282 0 30 GTGTAGCCAACACTGCAGGGGCCTTAGCAG 1 92.186087372 2.26076470557 0 chr2_+_180740712_180740742|92.186087372|2.26076470557 0 IN ENSMUST00000094218 Annotated NA Included I1 1 4.02410082163969e-05 0.000287590499502755 -0.00013542847433239 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_180978411_180978441 ENSMUST00000108862.7 475 chr2:180977352+180979170 475 30 TTTTGGGGTTACAAGCAGCAGTCAGAGCCG 1 70.369349147 3.5839411235 0 chr2_+_180978411_180978441|70.369349147|3.5839411235 0 IN ENSMUST00000108862 Annotated NA Neuronal N1 18 0.0670495100392683 -0.00627618670743497 0.0606743669829217 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE TRUE chr2_+_181510503_181510530 ENSMUST00000149163.7 969 chr2:181508267+181511573,chr2:181508267+181513038 967,2 27 GGCTCATCCGCTCTCACAATCCTTTAG 1 85.7327343225 3.33212904536 0 chr2_+_181510503_181510530|85.7327343225|3.33212904536 0 IN ENSMUST00000149163 Annotated NA Neuronal N3 17 0.0512932370889495 -0.00603331846559615 0.012574308301562 TRUE TRUE TRUE 11.5 1 12.5 1 TRUE TRUE FALSE chr2_+_22926823_22926827 ENSMUST00000053729.13 1 chr2:22915524+22929539 1 4 GTTT 1 69.3616870828 None 0.192434803984 chr2_+_22926823_22926827|69.3616870828|None 0.191262006707801 RESCUED ENSMUST00000053729 Novel NA Excluded E3 2 0.0129688705022209 0.00834316766774008 0.00928137173909014 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_25057964_25057970 ENSMUST00000152122.7 2658 chr2:25057176+25058252,chr2:25057176+25059020 557,2101 6 CATCTC 1 76.5570536811 2.78780001402 0.00101610072575 chr2_+_25057964_25057970|76.5570536811|2.78780001402 0.000767945746906529 IN ENSMUST00000152122 Annotated NA Neuronal N2 8 0.0663730912146131 0.0252927122272601 -0.00929352178390306 TRUE TRUE FALSE 13.5 1 FALSE FALSE FALSE chr2_+_25059020_25059045 ENSMUST00000140737.7 0 chr2:25058321+25062473 0 25 GAACTTCCGCAAACACCTGCGCATG 1 80.3716337795 4.00893103049 3.66195962442e-12 chr2_+_25059020_25059045|80.3716337795|4.00893103049 1.57751589568988e-12 IN ENSMUST00000140737 Annotated Alt3 Excluded E1 6 -0.00156200675339208 -9.91121614086495e-06 -0.0011202602218949 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_25432383_25432386 ENSMUST00000102919.3 246 chr2:25432089+25433097 246 3 TCT 1 72.1120503643 2.23228570393 0.0592690090553 chr2_+_25432383_25432386|72.1120503643|2.23228570393 0.0573117758801547 IN ENSMUST00000102919 Missing in GENCODE NA Excluded E3 2 -0.00429770224379714 -0.00503658295852174 0.0420162498207512 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_25702729_25702753 ENSMUST00000077667.3 0 chr2:25702278+25703162 0 24 ATAAATGTGTTGAAAGTGACTAGG 1 91.2801064721 0.344571415102 3.04112290905e-12 chr2_+_25702729_25702753|91.2801064721|0.344571415102 4.88165063927681e-13 IN ENSMUST00000077667 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_+_25910265_25910286 ENSMUST00000198204.4 0 chr2:25909936+25911108,chr2:25909936+25911025 0 21 CCCCATGACGTCAGAGCCCAG 1 86.7314194418 2.1004000023 2.41925590672e-10 chr2_+_25910265_25910286|86.7314194418|2.1004000023 4.20640189346955e-11 IN ENSMUST00000198204 Annotated NA Included I1 1 -2.35034211568585e-05 0.000112336684546724 4.90407636810278e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_29907138_29907141 ENSMUST00000113767.7 2 chr2:29904107+29912568 2 3 AGG 1 65.1693847647 None 0.403100760792 chr2_+_29907138_29907141|65.1693847647|None 0.402989235316394 RESCUED ENSMUST00000113767 Novel NA Excluded E3 2 -0.000907949895919913 0.00525915074774675 -0.000203235574141974 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_30003673_30003697 ENSMUST00000113719.8 0 chr2:30003419+30004504 0 24 GAGGTGTATGGTGCGATGCCCAGG 1 86.6236615764 2.5357142748 3.75521835849e-12 chr2_+_30003673_30003697|86.6236615764|2.5357142748 6.58695320510105e-13 IN ENSMUST00000113719 Annotated NA Included I1 1 -4.35152640261261e-76 4.75542450083445e-76 1.12211374130208e-75 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_30014157_30014172 ENSMUST00000095083.10 6088 chr2:30013838+30015588 6088 15 CTTTCCAAGCTGTTG 1 84.2217073369 4.80868421103 6.29734131508e-09 chr2_+_30014157_30014172|84.2217073369|4.80868421103 1.44320777550888e-09 IN ENSMUST00000095083 Annotated NA Neuronal N2 8 0.0655953508258314 0.0189213804032785 -0.0203991094471661 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE TRUE chr2_+_30027630_30027648 ENSMUST00000113719.8 0 chr2:30027131+30028643,chr2:30027131+30029619 0 18 AACGTATCTCCTCGACGG 1 73.3530439422 3.8395454572 2.16823534682e-08 chr2_+_30027630_30027648|73.3530439422|3.8395454572 2.02962012751939e-08 IN ENSMUST00000113719 Annotated Alt5 Included I2 10 -0.00157938555832148 -0.00832101546147398 -0.00656171027176636 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_30271831_30271835 ENSMUST00000154647.7 28 chr2:30269847+30274469 28 4 GCAG 2 70.3410372439 None 0.067983340895 chr2_+_30270847_30270851|68.6338640123|-0.0288750045002,chr2_+_30271831_30271835|70.3410372439|None 0.533600876311909 RESCUED ENSMUST00000154647 Novel NA Excluded E2 3 0.00453497403531462 0.00217332992057228 -0.00598490142268012 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_30277622_30277644 ENSMUST00000127689.7 283 chr2:30277210+30279954 283 22 CAACCTCACTTTGGCGGCGAAG 1 83.1893586743 2.65419229177 6.03517236186e-13 chr2_+_30277622_30277644|83.1893586743|2.65419229177 1.6109336087311e-13 IN ENSMUST00000127689 Annotated Alt3 Included I2 10 -0.0129751327506805 -0.00521832617276347 -0.0115478084697063 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_31270611_31270636 ENSMUST00000150670.1 731 chr2:31246242+31280665 731 25 TCACTGAGAAAGAAGTACAGCAGTG 1 85.2130382667 2.26534481655 0 chr2_+_31270611_31270636|85.2130382667|2.26534481655 0 IN ENSMUST00000150670 Annotated NA Included I1 1 -2.82681390831291e-05 -9.47127542485112e-06 -2.87120575438386e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_32051773_32051798 ENSMUST00000065398.12 0 chr2:32051148+32052118 0 25 CCTTCACCTTTGGATCATCTAACTC 1 82.7727939046 2.04165514841 8.35775892938e-13 chr2_+_32051773_32051798|82.7727939046|2.04165514841 2.38364883387021e-13 IN ENSMUST00000065398 Annotated Alt5 Included I2 10 0.00138524815207074 -0.00193446170760789 0.00704738866762163 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_32397430_32397459 ENSMUST00000028162.4 59 chr2:32396550+32397537,chr2:32396550+32397695 27,32 29 GGTCACCTTAGAGGACTTCCTGAAGAAAG 1 81.5405010578 0.100303030555 0 chr2_+_32397430_32397459|81.5405010578|0.100303030555 0 IN ENSMUST00000028162 Novel NA Excluded E2 3 -0.00156487564285882 -0.000325188225478651 -0.000945083170592513 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_32558317_32558347 ENSMUST00000048375.5 0 chr2:32558147+32560038 0 30 GAGCTGAAAGGTGGGAAGGCGTATTCCAAG 1 90.0576192113 3.63879411229 0 chr2_+_32558317_32558347|90.0576192113|3.63879411229 0 IN ENSMUST00000048375 Annotated Alt3 Other O2 21 -0.00158197088306158 0.000142510891852636 0.00788147129274039 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_32758917_32758936 ENSMUST00000175763.7 1 chr2:32757450+32759526 1 19 CCGCACTGAGCAGTACAAG 1 78.0835486333 2.19086952993 2.91748847303e-11 chr2_+_32758917_32758936|78.0835486333|2.19086952993 1.82177606333767e-11 IN ENSMUST00000175763 Novel Alt5 Excluded E2 3 -0.000134833306274094 -0.000287598090290469 -0.00198312207541943 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_3306982_3307000 ENSMUST00000091504.4 12 chr2:3304947+3309466,chr2:3305439+3309466 3,9 18 GTGGTGATACTATGGAAG 1 84.95160201 0.0394090817056 2.27657892538e-10 chr2_+_3306982_3307000|84.95160201|0.0394090817056 4.74331685040852e-11 IN ENSMUST00000091504 Novel Alt3 Excluded E2 3 -0.00015039453005763 -0.0013739239184882 -0.00679381218228893 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_4514996_4515019 ENSMUST00000177457.7 0 chr2:4513845+4529791,chr2:4498073+4529791 0 23 GAAGCAAAAGGAGATTTCTCTAG 1 90.619886702 2.65896294349 2.26222596211e-10 chr2_+_4514996_4515019|90.619886702|2.65896294349 3.54511975331206e-11 IN ENSMUST00000177457 Annotated NA Included I1 1 0.000222805629923645 -0.000327803749044857 0.000137505148586185 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_48886673_48886697 ENSMUST00000063886.3 262 chr2:48873473+48890297 262 24 CACGCCTTTCATATAATGATAGAG 1 84.3647860278 5.89039287823 0 chr2_+_48886673_48886697|84.3647860278|5.89039287823 0 IN ENSMUST00000063886 Missing in GENCODE NA Neuronal N6 15 0.01390423368428 0.00805971422308318 -0.00264980464820319 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_49728541_49728568 ENSMUST00000028102.13 51 chr2:49727959+49730116 51 27 CCCTCAAGAGTCCATGTAGAACAGAAA 1 78.5996539112 -0.0659032266948 0 chr2_+_49728541_49728568|78.5996539112|-0.0659032266948 0 IN ENSMUST00000028102 Annotated NA Excluded E1 6 0.000509831840673822 -0.00164909538998003 -0.000120697918168669 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_53112276_53112297 ENSMUST00000155586.8 254 chr2:53108458+53114111 254 21 ATGGGCCAATCAAGCTTTTCT 1 70.3428671595 5.30648003429 4.99866814607e-12 chr2_+_53112276_53112297|70.3428671595|5.30648003429 4.94115859339672e-12 IN ENSMUST00000155586 Missing in GENCODE NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_+_55413026_55413053 ENSMUST00000128307.1 0 chr2:55411891+55415040,chr2:55411891+55421055 0 27 TCTTGAACTAAAATATGCATTAATATT 1 74.9463480804 0.0241290347561 0 chr2_+_55413026_55413053|74.9463480804|0.0241290347561 0 IN ENSMUST00000128307 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_+_55446825_55446844 ENSMUST00000112632.1 13 chr2:55437902+55594810 13 19 TCTCGGCAGACACCTGAGG 1 77.9946078254 5.29686959023 2.22946994199e-09 chr2_+_55446825_55446844|77.9946078254|5.29686959023 1.40989753205645e-09 IN ENSMUST00000112632 Novel Alt3 Excluded E1 6 -0.000433765124692915 0.000535757779403765 0.00110902247366086 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_5866232_5866241 ENSMUST00000026927.9 0 chr2:5864448+5866353 0 9 GGGATGGAG 1 88.0385661982 3.84784619109 0.0071913286219 chr2_+_5866232_5866241|88.0385661982|3.84784619109 0.00115277785927437 IN ENSMUST00000026927 Annotated NA Included I1 1 2.69121849572109e-118 5.03035302748697e-119 5.28022657712873e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_60247487_60247512 ENSMUST00000143806.1 128 chr2:60243670+60247889,chr2:60245260+60247889 1,127 25 CGGTAATAAGCCAGATTCTACTCAG 1 74.4643206664 2.02703447332 0 chr2_+_60247487_60247512|74.4643206664|2.02703447332 0 IN ENSMUST00000143806 Annotated Alt5 Neuronal N4 13 0.0265047455765448 0.00916897490925301 0.0194668456595221 TRUE TRUE FALSE 13.5 1 FALSE FALSE FALSE chr2_+_61630181_61630192 ENSMUST00000112502.7 1 chr2:61627839+61643714 1 11 ATGAAGGAAGA 1 71.4154049139 0.128533332547 1.47706669529e-05 chr2_+_61630181_61630192|71.4154049139|0.128533332547 1.44437545503973e-05 IN ENSMUST00000112502 Novel NA Excluded E1 6 0.000506524135657345 -7.50578202964166e-06 0.00140699438855533 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_62317497_62317514 ENSMUST00000054484.14 15 chr2:62316681+62324724 15 17 AAGCTGATTCCCCAAAG 1 81.0032999595 4.04409526076 1.82399162441e-09 chr2_+_62317497_62317514|81.0032999595|4.04409526076 7.0345718139464e-10 IN ENSMUST00000054484 Novel Alt5 Excluded E1 6 -0.000226648942556718 0.00116080229113219 0.00129914959273575 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_69105742_69105766 ENSMUST00000028426.8 817 chr2:69105159+69108441 817 24 GCTGGGAAGTGGAACCCTTTGCAT 1 77.0825847511 4.50871434382 0 chr2_+_69105742_69105766|77.0825847511|4.50871434382 0 IN ENSMUST00000028426 Annotated NA Neuronal N1 18 0.0835125078766964 0.0120017766998377 -0.00813805266736497 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE TRUE chr2_+_69653164_69653167 ENSMUST00000134659.7 10 chr2:69652847+69654062 10 3 TTG 1 87.4289625866 -0.0061428562871 0.0710800566078 chr2_+_69653164_69653167|87.4289625866|-0.0061428562871 0.0117671683468431 IN ENSMUST00000134659 Novel NA Excluded E1 6 5.61212651414398e-05 -0.00174578738370628 0.000724208005972608 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_69666940_69666964 ENSMUST00000134659.7 0 chr2:69665109+69667103 0 24 GCGTATTTTGCTGATGGGAATAAG 1 89.5030511773 5.25421421549 6.98463509252e-12 chr2_+_69666940_69666964|89.5030511773|5.25421421549 1.0804690475652e-12 IN ENSMUST00000134659 Annotated NA Included I1 1 -9.82782027060276e-74 9.58844063885751e-74 2.39195932897182e-73 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_69735867_69735897 ENSMUST00000090858.9 0 chr2:69734378+69735988 0 30 AACAACAAAACCAACTCCTCATTTAGATGG 1 67.6019987237 4.46891170696 0 chr2_+_69735867_69735897|67.6019987237|4.46891170696 0 IN ENSMUST00000090858 Annotated Alt5 Included I2 10 0.000794086783248281 -0.0011076826806949 -0.00379957201677099 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_70522479_70522507 ENSMUST00000100041.8 0 chr2:70521108+70523330,chr2:70521108+70523043 0 28 CAACTACCTGGACAAGACTGATGTGCAG 1 86.5174919397 0.248343752697 0 chr2_+_70522479_70522507|86.5174919397|0.248343752697 0 IN ENSMUST00000100041 Annotated NA Included I1 1 -4.79500908567471e-08 1.84941845343457e-06 -4.1594253745243e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_71063921_71063951 ENSMUST00000130292.7 1 chr2:71063495+71073120 1 30 CACTCAGGAGACAGGAGCAGGTGGATCTCT 1 76.2232149112 0.0669999990393 0 chr2_+_71063921_71063951|76.2232149112|0.0669999990393 0 IN ENSMUST00000130292 Novel NA Excluded E1 6 0.00516356673727425 0.00221836042500431 0.00137981908665332 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_71227826_71227844 ENSMUST00000112142.7 773 chr2:71219418+71228599 773 18 TTTTTTCTGAGTACTGGG 1 79.7692807772 2.67477277192 5.20628873346e-10 chr2_+_71227826_71227844|79.7692807772|2.67477277192 2.48833953442329e-10 IN ENSMUST00000112142 Annotated Alt5 Neuronal N6 15 0.0127947864307314 0.00173890028767775 0.0287652963570237 TRUE TRUE FALSE FALSE FALSE FALSE chr2_+_71238379_71238400 ENSMUST00000112142.7 3 chr2:71236030+71246688 3 21 ACAAAGAAGCTAAAAGAAGAG 1 83.568151222 0.295839995444 9.44400113667e-12 chr2_+_71238379_71238400|83.568151222|0.295839995444 2.37831976335201e-12 IN ENSMUST00000112142 Novel NA Excluded E1 6 -3.47418783675667e-05 6.9092106759211e-05 -2.65947856373505e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_72092629_72092641 ENSMUST00000090826.11 1 chr2:72045248+72137241 1 12 AACTGTCTGGTT 1 69.1530766942 1.65643750038 2.1414834813e-05 chr2_+_72092629_72092641|69.1530766942|1.65643750038 2.13013319525501e-05 IN ENSMUST00000090826 Novel NA Excluded E1 6 -0.00164541738054997 0.00603831988068692 0.00284730172172751 TRUE TRUE FALSE FALSE FALSE FALSE chr2_+_72141152_72141172 ENSMUST00000090826.11 0 chr2:72140758+72162450,chr2:72137314+72174422,chr2:72140758+72174422,chr2:72137314+72174801 0 20 GGATTCCTGACAAGGAGAAT 1 81.846096978 3.60504167123 1.9706930976e-08 chr2_+_72141152_72141172|81.846096978|3.60504167123 6.56378285057713e-09 IN ENSMUST00000090826 Annotated NA Included I1 1 -6.1884639220405e-06 3.72804406116046e-05 1.18862563363256e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_72371726_72371755 ENSMUST00000090824.11 0 chr2:72368466+72371870 0 29 TTGTTATCGCTGCTGACGGAGTGCTGAAG 1 85.4559336794 3.77127273607 0 chr2_+_72371726_72371755|85.4559336794|3.77127273607 0 IN ENSMUST00000090824 Annotated NA Included I1 1 4.07097256440944e-36 1.10096754777595e-36 9.45425287474109e-36 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_76569019_76569043 ENSMUST00000111929.7 406 chr2:76568242+76577011 406 24 AGTGAAGGAGCCGGCAAATCCTGG 1 77.2613640613 2.44110716613 0 chr2_+_76569019_76569043|77.2613640613|2.44110716613 0 IN ENSMUST00000111929 Annotated NA Neuronal N6 15 0.0109258459387057 -0.0122666922472308 0.049214492751815 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_85042422_85042431 ENSMUST00000077798.12 492 chr2:85042315+85042692 492 9 AAAAAAGAG 1 82.1528322796 4.31946150156 5.42400800496e-06 chr2_+_85042422_85042431|82.1528322796|4.31946150156 1.71450232455683e-06 IN ENSMUST00000077798 Missing in GENCODE NA Excluded E2 3 -0.00042081900665122 -0.00607465792009199 0.000100807409843239 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_85049651_85049655 ENSMUST00000139915.1 1 chr2:85048135+85050864 1 4 GTAG 1 63.9876735498 0.234750005417 0.0406693543364 chr2_+_85049651_85049655|63.9876735498|0.234750005417 0.0406651228078486 IN ENSMUST00000139915 Novel NA Included I3 5 0.00251712822099415 0.0196997908203659 -0.00842400733525136 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_90693052_90693070 ENSMUST00000136739.7 0 chr2:90690225+90696650 0 18 TTCTGCGTTTTCCAGTTG 1 81.1067765127 3.75640911321 9.31759088774e-08 chr2_+_90693052_90693070|81.1067765127|3.75640911321 3.52893018140676e-08 IN ENSMUST00000136739 Annotated Alt3 Excluded E2 3 0.00019174148380492 -3.75432597681804e-06 -0.00204543810459866 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_90852839_90852866 ENSMUST00000136872.7 0 chr2:90849704+90853050,chr2:90849704+90853023 0 27 TATTACCAGGAGTCTGAGAAACCTGAG 1 81.3350671267 2.13061289494 0 chr2_+_90852839_90852866|81.3350671267|2.13061289494 0 IN ENSMUST00000136872 Annotated Alt5 Included I2 10 0.00236451028841 -0.00216706856116685 0.00816847958068284 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_90852848_90852866 ENSMUST00000111467.3 43 chr2:90849704+90853050 43 18 GAGTCTGAGAAACCTGAG 1 80.3978050265 2.02945453307 1.88947524293e-10 chr2_+_90852848_90852866|80.3978050265|2.02945453307 8.1022411002607e-11 IN ENSMUST00000111467 Novel Alt5 Excluded E4 11 0.00792592602021205 -0.000940517786161969 0.025132524446048 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_91121731_91121761 ENSMUST00000111430.9 0 chr2:91121568+91121901 0 30 GAGCCTGGCGGGAGCAGGTCGGAGAACCAG 1 75.4016172933 1.33979412738 0 chr2_+_91121731_91121761|75.4016172933|1.33979412738 0 IN ENSMUST00000111430 Annotated NA Included I1 1 1.5473953971793e-05 -1.27909545874802e-06 -1.43251349313713e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_91122635_91122647 ENSMUST00000137942.7 0 chr2:91122342+91122854,chr2:91121955+91122854 0 12 CAGTTTCCGGAG 1 79.4505992335 1.46743747965 2.95634606333e-05 chr2_+_91122635_91122647|79.4505992335|1.46743747965 1.49099014810083e-05 IN ENSMUST00000137942 Annotated NA Included I1 1 -1.0806317127003e-06 -2.9966029574051e-07 8.99278506221082e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_91122638_91122647 ENSMUST00000111430.9 0 chr2:91122342+91122854,chr2:91121955+91122854 0 9 TTTCCGGAG 1 76.9069473716 1.32715382484 0.00190169799759 chr2_+_91122638_91122647|76.9069473716|1.32715382484 0.0013829161921638 IN ENSMUST00000111430 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_+_91124274_91124277 ENSMUST00000111430.9 0 chr2:91124018+91124383 0 3 CAA 1 83.2180503712 2.40814285619 0.995027341692 chr2_+_91124274_91124277|83.2180503712|2.40814285619 0.264371946347954 RESCUED ENSMUST00000111430 Annotated NA Included I1 1 -6.84330303596515e-06 2.54171526005416e-06 -3.0894391015109e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_91126263_91126293 ENSMUST00000111430.9 0 chr2:91126052+91128652 0 30 AGGTCAAGATTGACTTTGTGCCTAGGCAGG 1 87.0140205723 4.30476472834 0 chr2_+_91126263_91126293|87.0140205723|4.30476472834 0 IN ENSMUST00000111430 Annotated NA Included I1 1 -2.63260341769709e-06 1.60830943000049e-07 2.28464590920658e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_91599603_91599627 ENSMUST00000111338.9 506 chr2:91599378+91600640 506 24 AATTATGTATCGCACATATAGGAT 1 81.5731287999 5.80532151886 0 chr2_+_91599603_91599627|81.5731287999|5.80532151886 0 IN ENSMUST00000111338 Annotated NA Neuronal N4 13 0.0320533737073904 0.0215287124271967 -0.0294481337789246 TRUE TRUE TRUE 11.5 1 FALSE FALSE FALSE chr2_+_91655361_91655391 ENSMUST00000111329.7 51 chr2:91654531+91662297 51 30 ACTGTGGCGAGCCTGAGGGGCCCCAGCCAG 1 87.8681423521 1.45555883383 0 chr2_+_91655361_91655391|87.8681423521|1.45555883383 0 IN ENSMUST00000111329 Annotated NA Excluded E1 6 -0.000554939192987934 0.000152753377989851 0.00146882872435447 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_92215555_92215575 ENSMUST00000111294.7 1 chr2:92214089+92221471 1 20 GGAGCCCACTACCTCATAAG 1 79.053852796 2.63175002237 2.61408672486e-11 chr2_+_92215555_92215575|79.053852796|2.63175002237 1.4071632747914e-11 IN ENSMUST00000111294 Novel Alt5 Excluded E2 3 0.000830626257310081 0.000590180471118582 0.00157409192687192 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_92348020_92348047 ENSMUST00000111290.9 0 chr2:92344584+92348877 0 27 GGTTGGTAACACATGACCATCTAGAAG 1 82.2845516826 4.81996776222 0 chr2_+_92348020_92348047|82.2845516826|4.81996776222 0 IN ENSMUST00000111290 Annotated Alt5 Excluded E2 3 -0.000736987146727219 0.00214870063699064 5.98569263641241e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_+_92351608_92351631 ENSMUST00000068702.13 0 chr2:92349448+92351700,chr2:92349448+92356863 0 23 CCAATGAGGAACACTGGCCAAAG 1 80.6395610578 5.10607409919 3.16191517413e-11 chr2_+_92351608_92351631|80.6395610578|5.10607409919 1.29974919715892e-11 IN ENSMUST00000068702 Annotated NA Neuronal N1 18 0.0665459502882252 0.0288585228346845 -0.0256730939096811 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr2_+_97549202_97549219 ENSMUST00000135431.7 74 chr2:97426704+97603488,chr2:97468420+97603488 2,72 17 CAACCTTCATTTGCTTG 1 84.713160543 -0.166095230196 3.07061323035e-08 chr2_+_97549202_97549219|84.713160543|-0.166095230196 6.59175203310269e-09 IN ENSMUST00000135431 Novel NA Excluded E1 6 0.000267302590161531 -0.00100616680836864 -0.000686431946004951 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_102346963_102346983 ENSMUST00000102573.7 0 chr2:102304504-102357416 0 20 GGTGACGAGGAAGGACCCAG 1 92.5307675291 1.90741667338 4.81013546771e-08 chr2_-_102346963_102346983|92.5307675291|1.90741667338 8.34489921608395e-09 IN ENSMUST00000102573 Annotated NA Included I1 1 3.09512040658245e-36 -7.84782780939978e-36 -8.41951085438248e-36 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_103773733_103773744 ENSMUST00000143188.1 0 chr2:103773084-103775416 0 11 AAGCCACACAG 1 81.9268204286 3.76886669397 0.000552262833519 chr2_-_103773733_103773744|81.9268204286|3.76886669397 0.000181413712412204 IN ENSMUST00000143188 Annotated Alt5 Excluded E1 6 -3.43979262115673e-05 -0.000184042209971059 -0.000316612078438302 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_112662989_112663007 ENSMUST00000208151.1 0 chr2:112662582-112663268 0 18 TCATTGTTCGTGAGCGTG 1 82.9499849861 3.8048636777 9.66247171164e-09 chr2_-_112662989_112663007|82.9499849861|3.8048636777 2.67821864685658e-09 IN ENSMUST00000208151 Annotated NA Included I1 1 -0.000234620823789219 -0.000397349284409526 0.00111506596344686 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_112681734_112681749 ENSMUST00000208151.1 207 chr2:112678547-112686574 207 15 GCCATGCAAGTAAAG 1 78.0050003655 3.56300001395 2.91329338431e-08 chr2_-_112681734_112681749|78.0050003655|3.56300001395 1.83963345667948e-08 IN ENSMUST00000208151 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_-_112967538_112967550 ENSMUST00000208151.1 24 chr2:112967227-112996579 24 12 TTTCAAAGGAAG 1 79.4470429823 3.01318751276 6.83029643644e-06 chr2_-_112967538_112967550|79.4470429823|3.01318751276 3.44680514929863e-06 IN ENSMUST00000208151 Missing in GENCODE NA Excluded E3 2 -0.00978452159894777 0.00622607231320436 0.043132078470195 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_112989819_112989840 ENSMUST00000208151.1 60 chr2:112967227-112996579 60 21 CTCAGTGACCTCTCGGAATGG 1 80.0845441765 2.48483997881 2.60476085145e-11 chr2_-_112989819_112989840|80.0845441765|2.48483997881 1.1793899190593e-11 IN ENSMUST00000208151 Annotated NA Excluded E3 2 -0.0190158337516945 0.0103826304964447 0.0785077343457324 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_113790266_113790287 ENSMUST00000024005.7 63 chr2:113788848-113791879 63 21 GGTCTCACATATGCTAAACAG 1 69.3025428267 -0.0827200064808 2.66986432962e-12 chr2_-_113790266_113790287|69.3025428267|-0.0827200064808 2.65421018497136e-12 IN ENSMUST00000024005 Novel NA Excluded E1 6 2.43230063617473e-05 -6.73893776625246e-06 2.24546416046835e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_11478035_11478058 ENSMUST00000192949.5 36 chr2:11474543-11480197 36 23 CCTTTGCTAGGGAAAGCCTGTCT 1 80.9889368476 4.03192596855 0 chr2_-_11478035_11478058|80.9889368476|4.03192596855 0 IN ENSMUST00000192949 Annotated Alt3 Neuronal N4 13 0.0359750634371815 -0.00254671071353782 0.0135924111204343 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr2_-_119769886_119769910 ENSMUST00000184294.7 1 chr2:119769732-119770319 1 24 AGCCACAAGGGGCTCTGTGGACAG 1 79.2084634084 2.86228571047 0 chr2_-_119769886_119769910|79.2084634084|2.86228571047 0 IN ENSMUST00000184294 Novel Alt5 Excluded E2 3 -0.000504315815144959 0.00196202934302314 -0.000629539916755049 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_120563260_120563285 ENSMUST00000055241.12 9 chr2:120555315-120563686 9 25 CAATGTAGTAGCAACTAGTGGAACG 1 71.6016419937 0.240103443555 0 chr2_-_120563260_120563285|71.6016419937|0.240103443555 0 IN ENSMUST00000055241 Novel NA Excluded E1 6 0.000195701722561252 0.000116299145274319 0.000325672080000235 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_120609114_120609121 MmuEX0027055 0 chr2:120609014-120609321,chr2:120609023-120609188,chr2:120609023-120609273,chr2:120609023-120609280 0 7 GCAGAAG 1 66.2929529981 0.518545447425 0.00935338892952 chr2_-_120609114_120609121|66.2929529981|0.518545447425 0.00934710705688224 IN MmuEX0027055 Missing in GENCODE NA Excluded E1 6 -0.0017747609248697 0.00169558409361421 0.000370395768870654 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_121399445_121399469 ENSMUST00000154604.7 0 chr2:121397888-121410137,chr2:121397888-121399736 0 24 GAGACAGCACTCTGAATCACTAAG 1 87.7133245794 0.525964279576 6.46593889542e-12 chr2_-_121399445_121399469|87.7133245794|0.525964279576 1.05315756115942e-12 IN ENSMUST00000154604 Annotated NA FALSE TRUE TRUE 15.5 -1 12.5 -1 FALSE FALSE FALSE chr2_-_121569324_121569354 ENSMUST00000110593.8 17 chr2:121568980-121573544 17 30 TGGGATTGGCAAAGCTTCCTCCCACAAAAG 1 79.6432237549 0.0729117638925 0 chr2_-_121569324_121569354|79.6432237549|0.0729117638925 0 IN ENSMUST00000110593 Missing in GENCODE NA Excluded E1 6 0.00117990424088564 -0.00228460257470558 -0.00067109131041492 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_12193269_12193282 ENSMUST00000028106.10 59 chr2:12191843-12193411 59 13 ACTCTGGCATAAG 1 74.4123924929 -0.0565882390913 9.0280077969e-08 chr2_-_12193269_12193282|74.4123924929|-0.0565882390913 8.07124701518447e-08 IN ENSMUST00000028106 Annotated NA Neuronal N4 13 0.0294852273762635 0.00404287937275236 0.0726623882499757 TRUE TRUE TRUE FALSE FALSE FALSE chr2_-_12350993_12351000 ENSMUST00000144645.7 3 chr2:12348203-12355276 3 7 GGCTCCA 1 68.3689405579 3.46127276123 0.00168229555812 chr2_-_12350993_12351000|68.3689405579|3.46127276123 0.00167709192477083 IN ENSMUST00000144645 Novel Alt3 Excluded E2 3 -0.000727806455963504 0.000348047494940063 -0.00186858292036967 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_125087676_125087703 ENSMUST00000110501.7 0 chr2:125086716-125088862,chr2:125087589-125088862 0 27 TGAATTACCATCTAATTCACATTTCAG 1 83.3992465512 0.52648386924 0 chr2_-_125087676_125087703|83.3992465512|0.52648386924 0 IN ENSMUST00000110501 Annotated NA Included I1 1 -5.31364716661159e-12 -6.36116047963232e-11 4.32009720326182e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_125314906_125314935 ENSMUST00000028633.12 3 chr2:125314800-125315358 3 29 CTTTCGCTTCTTGCTCCTCTTCACCCAGG 1 79.0154590932 1.48257575387 0 chr2_-_125314906_125314935|79.0154590932|1.48257575387 0 IN ENSMUST00000028633 Novel NA Neuronal N6 15 0.0133299696214255 0.00461675341946055 0.0162740481505726 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_125767808_125767833 ENSMUST00000053699.12 0 chr2:125767490-125768106 0 25 CGTTTGGAGTCATCGGGCTGTTCAG 1 78.3822392112 1.45382759412 5.21360732364e-13 chr2_-_125767808_125767833|78.3822392112|1.45382759412 3.11639603012281e-13 IN ENSMUST00000053699 Annotated NA Included I1 1 2.57713144890148e-121 -1.32102455961847e-121 -3.08043542112831e-121 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_126662990_126663012 ENSMUST00000110425.8 1 chr2:126658577-126675355 1 22 TCAGAATTCATTGTGTTTTCAG 1 82.6243981002 -0.00365384503339 3.7196912217e-12 chr2_-_126662990_126663012|82.6243981002|-0.00365384503339 1.08690834110803e-12 IN ENSMUST00000110425 Novel Alt5 Excluded E1 6 0.000557866139677942 -0.00019562282152929 0.00188479517429766 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_126801122_126801148 ENSMUST00000103224.9 0 chr2:126800337-126802585,chr2:126799363-126802585 0 26 GCCATCTGAAGGAGGAACATTAAATG 1 84.7283868226 2.52683329334 4.92494933724e-13 chr2_-_126801122_126801148|84.7283868226|2.52683329334 1.0547118733939e-13 IN ENSMUST00000103224 Annotated NA Included I1 1 -1.0456724470885e-52 -4.79952701090867e-53 -1.45449089161709e-52 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_127466666_127466683 ENSMUST00000103215.10 15 chr2:127465978-127510828 15 17 CTCTGGCTCACATTCTG 1 71.4442692444 -0.106238093405 1.01929344964e-08 chr2_-_127466666_127466683|71.4442692444|-0.106238093405 9.9634769323842e-09 IN ENSMUST00000103215 Novel NA Excluded E1 6 2.8917543830602e-06 -8.11022318697916e-05 6.72511326819032e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_127466666_127466687 ENSMUST00000028850.14 17 chr2:127465974-127510828,chr2:127465978-127510828 1,16 21 GCAGCTCTGGCTCACATTCTG 1 76.1159749465 -0.0825599969923 3.98125976631e-11 chr2_-_127466666_127466687|76.1159749465|-0.0825599969923 3.14426262804091e-11 IN ENSMUST00000028850 Novel NA Excluded E1 6 7.41509041184432e-06 -0.000145357534356514 0.000139024833173475 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_131055950_131055979 ENSMUST00000134742.7 0 chr2:131055827-131056189 0 29 GTGAGGCGAGAGGCGCGCAGGAGTCCCAG 1 83.3548452007 1.20875756725 0 chr2_-_131055950_131055979|83.3548452007|1.20875756725 0 IN ENSMUST00000134742 Annotated Alt3 Excluded E3 2 0.00660724094853148 0.00437011311924971 0.00530169420780232 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_132541144_132541165 ENSMUST00000148833.7 255 chr2:132540362-132542242 255 21 AAAAAATTTGTGCATACACAG 1 81.8404345974 0.210679999888 1.64757096854e-12 chr2_-_132541144_132541165|81.8404345974|0.210679999888 5.49338352584527e-13 IN ENSMUST00000148833 Novel NA Excluded E2 3 0.00265986615238314 -0.00521689124730009 0.0135222491798087 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_132568619_132568626 ENSMUST00000110136.7 1 chr2:132564711-132572184 1 7 GAGACAG 1 75.4452245294 1.58909088915 0.00177749802522 chr2_-_132568619_132568626|75.4452245294|1.58909088915 0.00148643531118486 IN ENSMUST00000110136 Novel Alt5 Excluded E1 6 0.000822158477772242 -0.000681587881170404 0.0030252254499036 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_132939499_132939515 ENSMUST00000144342.1 1 chr2:132939387-132941936 1 16 ACATAGCCCAAGACTG 1 79.6097328451 3.50590000618 2.30011210078e-09 chr2_-_132939499_132939515|79.6097328451|3.50590000618 1.12946629826638e-09 IN ENSMUST00000144342 Novel Alt3 Excluded E3 2 -0.00195542930042914 -0.00330200798788369 -0.0021362185546551 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_137087615_137087643 ENSMUST00000028735.7 0 chr2:137087162-137088111 0 28 ATACCAACGACTGCAGTCCCCATCCTTG 1 91.1157593271 5.09234368755 0 chr2_-_137087615_137087643|91.1157593271|5.09234368755 0 IN ENSMUST00000028735 Annotated NA Included I1 1 1.67892668995673e-30 -2.05620303921513e-30 -3.21170638684393e-30 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_140169125_140169155 ENSMUST00000046030.7 56 chr2:140168455-140170476 56 30 AACCTCTCATTGGAACCTGAAGCTCCTCAA 1 84.3394434218 0.2183823511 0 chr2_-_140169125_140169155|84.3394434218|0.2183823511 0 IN ENSMUST00000046030 Novel NA Excluded E1 6 0.000542052115709052 0.00015977717538394 0.000564080844246363 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_147967241_147967271 ENSMUST00000129082.1 0 chr2:147962707-147972674 0 30 GTATGTGGAGCCTGACTGTGAAACTCACAT 1 91.4800506562 -0.0201764711562 0 chr2_-_147967241_147967271|91.4800506562|-0.0201764711562 0 IN ENSMUST00000129082 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_-_148707158_148707181 ENSMUST00000136513.1 1 chr2:148707023-148709316 1 23 CCATCGACATTTACACAGACATG 1 78.2399891614 5.31481487111 0 chr2_-_148707158_148707181|78.2399891614|5.31481487111 0 IN ENSMUST00000136513 Novel Alt5 Excluded E2 3 0.00225847586420614 0.00291580045841428 -5.42594352068028e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_150589102_150589122 ENSMUST00000046399.6 35 chr2:150589019-150590032 35 20 CATGGTGACTGTTTAGGGAG 1 80.2829001319 -0.508416665408 3.51363382833e-12 chr2_-_150589102_150589122|80.2829001319|-0.508416665408 1.53710377759353e-12 IN ENSMUST00000046399 Novel Alt3 Excluded E1 6 0.00032747170400189 0.000570437629590561 -0.00100713538713132 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_151602380_151602408 ENSMUST00000148755.7 0 chr2:151601074-151632147,chr2:151601631-151632147 0 28 GGCTGTTGGGAGAAATCAATGGCGTGAT 1 75.7999519595 1.02209373808 0 chr2_-_151602380_151602408|75.7999519595|1.02209373808 0 IN ENSMUST00000148755 Annotated NA Excluded E3 2 -0.000384365569226463 -0.0172932762165459 0.0167600103105724 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_154348650_154348660 ENSMUST00000148289.7 1 chr2:154346015-154350817 1 10 CATGAGGCAA 1 84.0457246903 4.13735712559 1.78365309095e-05 chr2_-_154348650_154348660|84.0457246903|4.13735712559 4.18952070524448e-06 IN ENSMUST00000148289 Novel Alt5 Excluded E2 3 -0.00110516976199958 -0.000313298905082147 -0.00166739681766628 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_154554899_154554925 ENSMUST00000109716.8 0 chr2:154554744-154557049,chr2:154554744-154555583,chr2:154554744-154555894 0 26 CAATTTAGAGACAGAGAAACTGTGTG 1 84.4254149325 1.83846666999 1.79634085384e-13 chr2_-_154554899_154554925|84.4254149325|1.83846666999 4.00790511889682e-14 IN ENSMUST00000109716 Annotated NA Included I1 1 -1.48310547249829e-07 7.45783223214296e-07 3.31640682038423e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_154557056_154557081 ENSMUST00000109716.8 0 chr2:154555692-154558737,chr2:154555956-154558737 0 25 GTTTTCCGAAGAGCAGACAAAAATG 1 84.8691522239 3.65106897711 2.44426701101e-12 chr2_-_154557056_154557081|84.8691522239|3.65106897711 5.14477349611298e-13 IN ENSMUST00000109716 Annotated Alt3 Included I2 10 0.00320577088601343 -0.0120404967843399 -0.00073200301176889 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_155576954_155576971 ENSMUST00000079691.12 23 chr2:155573175-155577521 23 17 ATGTGTGAAGATGCTCG 1 78.5925759354 0.691428577793 9.83391146292e-10 chr2_-_155576954_155576971|78.5925759354|0.691428577793 5.69305158570899e-10 IN ENSMUST00000079691 Novel Alt3 Excluded E1 6 8.14291211526313e-05 0.000160911651510321 -0.000276180977877413 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_155858111_155858131 ENSMUST00000152818.7 0 chr2:155851472-155911745,chr2:155851472-155887108 0 20 CAATCTTGGGATACGATGAG 1 83.8281028301 4.07620836135 3.23889247644e-08 chr2_-_155858111_155858131|83.8281028301|4.07620836135 7.84901033057395e-09 IN ENSMUST00000152818 Annotated Alt5 Excluded E2 3 -0.000885462336249709 4.64041935848295e-05 -0.0024778641154666 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_156098366_156098372 ENSMUST00000184265.7 9 chr2:156079464-156103348 9 6 GTGTGT 1 73.6052270402 4.92899997234 0.0225107958061 chr2_-_156098366_156098372|73.6052270402|4.92899997234 0.0208793282113784 IN ENSMUST00000184265 Novel Alt3 Excluded E3 2 -0.00328309939901594 0.00294040492290699 -0.0119281312991931 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_156103348_156103371 ENSMUST00000142975.7 1 chr2:156079464-156111785 1 23 AAAATACATCTCTTGTTTTACAG 1 84.841772542 2.77525922546 0 chr2_-_156103348_156103371|84.841772542|2.77525922546 0 IN ENSMUST00000142975 Novel Alt5 Excluded E1 6 -8.70430888630782e-05 -0.000735942770135817 0.00177389648448771 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_156126318_156126334 ENSMUST00000160165.7 0 chr2:156125370-156127010,chr2:156123978-156134458 0 16 CACACTCCTCTATCAG 1 73.0728596814 4.42800010275 3.77185571665e-07 chr2_-_156126318_156126334|73.0728596814|4.42800010275 3.56284617031299e-07 IN ENSMUST00000160165 Annotated Alt5 Excluded E2 3 1.08578756645835e-06 0.000196706730132575 -0.00108823470139609 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_156167684_156167696 ENSMUST00000146288.7 1 chr2:156167591-156172827 1 12 CATCAAATTAAG 1 70.2821692014 4.25449997932 1.21537522146e-06 chr2_-_156167684_156167696|70.2821692014|4.25449997932 1.20191202779285e-06 IN ENSMUST00000146288 Novel Alt5 Excluded E1 6 -0.000473657218385706 -0.000169365540600995 0.000105546226521835 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_156175910_156175914 ENSMUST00000153514.7 50 chr2:156173022-156177335,chr2:156174168-156177335,chr2:156174974-156177335 1,48,1 4 AAAA 1 61.1696033879 0.0732499986188 0.0352672939802 chr2_-_156175910_156175914|61.1696033879|0.0732499986188 0.035266998335327 IN ENSMUST00000153514 Novel NA Excluded E1 6 -0.000458815544300836 0.000385432287011983 0.000776354866466541 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_156178879_156178899 ENSMUST00000154677.7 1 chr2:156177906-156179176 1 20 TGTGAACTGTCAATCATAAG 1 77.4779501202 5.12233333786 4.42668124379e-12 chr2_-_156178879_156178899|77.4779501202|5.12233333786 3.00237612549381e-12 IN ENSMUST00000154677 Novel Alt5 Excluded E1 6 1.46984537679919e-05 6.15751132938265e-05 0.00117456337716328 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_156931241_156931267 ENSMUST00000156491.7 0 chr2:156928528-156931429 0 26 CCTGGGAAGCTCACCGAGGCCTTCAA 1 74.2247743446 4.34169996489 6.3749006074e-13 chr2_-_156931241_156931267|74.2247743446|4.34169996489 5.75428593663219e-13 IN ENSMUST00000156491 Annotated Alt3 Excluded E1 6 0.000941684607722266 -0.000208365486552829 0.00185389454138806 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_157005847_157005873 ENSMUST00000103129.8 0 chr2:157005491-157006259,chr2:157005491-157006974 0 26 GATGACGTCAGTGACCAGATCAGAAG 1 87.6901226296 1.18683332279 1.63868918435e-13 chr2_-_157005847_157005873|87.6901226296|1.18683332279 2.67563748934663e-14 IN ENSMUST00000103129 Annotated Alt5 Other O2 21 -0.00417592940413173 0.00148001536288137 -0.0212304464116506 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_161059790_161059806 ENSMUST00000138078.7 189 chr2:161052905-161059918 189 16 AATAACAGAGCTCTGA 1 80.8035629356 0.225449991017 6.3600964495e-09 chr2_-_161059790_161059806|80.8035629356|0.225449991017 2.5403275039082e-09 IN ENSMUST00000138078 Missing in GENCODE NA Excluded E3 2 -0.00244698509803823 0.00881230565389593 -0.00554513509065332 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_161687068_161687095 ENSMUST00000109445.8 42 chr2:161656290-161697973 42 27 AAATGCTTATTCGTACTCCTATTACTT 1 73.5645891012 3.99432264989 0 chr2_-_161687068_161687095|73.5645891012|3.99432264989 0 IN ENSMUST00000109445 Novel NA Excluded E4 11 -0.00287031093495288 -0.00162227454657963 0.0151885243016409 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_161687068_161687098 ENSMUST00000109445.8 329 chr2:161656290-161697973 329 30 AAGAAATGCTTATTCGTACTCCTATTACTT 1 75.9246279134 3.97882359519 0 chr2_-_161687068_161687098|75.9246279134|3.97882359519 0 IN ENSMUST00000109445 Annotated NA Other O2 21 0.000109136250543079 -0.00895074595496217 0.00676048631498993 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_164900500_164900519 ENSMUST00000041361.13 0 chr2:164900394-164901417 0 19 AAAGAAGAGGCCGGATCCG 1 87.8539173471 2.00113043319 3.63797880709e-09 chr2_-_164900500_164900519|87.8539173471|2.00113043319 5.88262438760978e-10 IN ENSMUST00000041361 Annotated NA Included I1 1 5.66376404487935e-58 -9.20613977969658e-58 -1.50185194472973e-57 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_165852867_165852879 ENSMUST00000177633.7 1608 chr2:165852148-165858054,chr2:165852148-165861884,chr2:165852148-165875704 213,8,1387 12 AACCTAAGGAAG 1 73.9380990622 0.032749991864 1.37137155098e-06 chr2_-_165852867_165852879|73.9380990622|0.032749991864 1.25464763822691e-06 IN ENSMUST00000177633 Annotated NA Neuronal N3 17 0.0458131789911243 0.0240875398799232 0.0244750982672688 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr2_-_167994953_167994977 ENSMUST00000123782.7 0 chr2:167994707-167997243 0 24 GCCTTCTACTATGACCTGGACAAG 1 89.6816578539 3.19885713417 8.91020590643e-12 chr2_-_167994953_167994977|89.6816578539|3.19885713417 1.37800881816474e-12 IN ENSMUST00000123782 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_-_168219219_168219245 ENSMUST00000138667.1 0 chr2:168217776-168220036 0 26 CCCAAATTTATTCCTGAATTTATCAG 1 82.6021283715 4.026733313 4.95159468983e-13 chr2_-_168219219_168219245|82.6021283715|4.026733313 1.4521717162097e-13 IN ENSMUST00000138667 Annotated NA Included I1 1 0.000262792980152107 -0.00208569508093476 0.00510840196527497 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_168733749_168733754 ENSMUST00000029060.10 1 chr2:168710976-168741681 1 5 GTGCT 1 59.7519021024 None 0.110500354673 chr2_-_168733749_168733754|59.7519021024|None 0.110500118405284 RESCUED ENSMUST00000029060 Novel NA Excluded E1 6 -0.000688795154895365 -0.00185828421210311 0.00144891896258818 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_180920311_180920336 ENSMUST00000037299.14 0 chr2:180919214-180920683,chr2:180919986-180920683 0 25 AGAACAAAAGGACAAGATAATAAAG 1 77.3020710537 3.81582758961 5.9330318436e-13 chr2_-_180920311_180920336|77.3020710537|3.81582758961 4.11448652926083e-13 IN ENSMUST00000037299 Annotated NA Included I1 1 1.23944380135944e-92 -2.29944505148459e-92 -2.53611264135582e-92 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_181096949_181096979 ENSMUST00000149964.8 0 chr2:181088534-181100549,chr2:181088570-181100549,chr2:181092292-181100549 0 30 GAAGGAGCCACAGCCAGAGCCATCACCAAG 1 84.5149426945 2.80955880809 0 chr2_-_181096949_181096979|84.5149426945|2.80955880809 0 IN ENSMUST00000149964 Annotated Alt3 Included I2 10 -0.00649622093652327 0.0219033759057015 0.0247719364032808 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_181103641_181103671 ENSMUST00000016491.13 129 chr2:181100618-181104886 129 30 CTCACAAACTCAAACCTATGGGGCCTCCAG 1 71.3268438999 2.83320587704 0 chr2_-_181103641_181103671|71.3268438999|2.83320587704 0 IN ENSMUST00000016491 Annotated NA Excluded E4 11 -0.00198049673960448 -0.0355183351099796 0.0995918479565527 TRUE TRUE TRUE 10.5 -1 FALSE FALSE TRUE chr2_-_181571237_181571257 ENSMUST00000138408.7 190 chr2:181570598-181572469,chr2:181570598-181573073 12,178 20 AGGAAGCTGCGTTGGGATAT 1 69.7624040921 4.03599994133 6.56186216474e-12 chr2_-_181571237_181571257|69.7624040921|4.03599994133 6.50979270488961e-12 IN ENSMUST00000138408 Novel NA Muscular M1 22 -0.00392029726770356 -0.102646154342807 -1.83216054944202e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_181572469_181572486 ENSMUST00000129469.7 143 chr2:181570598-181573073 143 17 CGCGAACTCAGCGTCAG 1 83.3855049202 4.65785711152 5.57974999538e-10 chr2_-_181572469_181572486|83.3855049202|4.65785711152 1.44463219164948e-10 IN ENSMUST00000129469 Annotated Alt3 Included I3 5 0.00995161190866608 -0.00535852787454026 -0.00279183678787351 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_20853957_20853978 ENSMUST00000154230.8 30 chr2:20853069-20854934 30 21 ACCCTGAGGAGAAATAGCATG 1 75.9499359927 3.98763997078 1.63424829225e-12 chr2_-_20853957_20853978|75.9499359927|3.98763997078 1.31050725826753e-12 IN ENSMUST00000154230 Annotated Alt5 Excluded E1 6 0.00168020039542176 0.000438334077719358 0.00224586698316126 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_20853957_20853981 ENSMUST00000154230.8 16 chr2:20853069-20854934 16 24 CAGACCCTGAGGAGAAATAGCATG 1 77.2563922149 4.09999997275 0 chr2_-_20853957_20853981|77.2563922149|4.09999997275 0 IN ENSMUST00000154230 Novel Alt5 Excluded E1 6 0.00137691139784331 0.000394498881743039 0.00212708715079652 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_20883199_20883229 ENSMUST00000173194.7 36 chr2:20881851-20887105 36 30 CTACAATTTACAAAGGATGTTACAGCACTG 1 82.8864903643 4.6337353333 0 chr2_-_20883199_20883229|82.8864903643|4.6337353333 0 IN ENSMUST00000173194 Annotated NA Neuronal N3 17 0.0557228621185679 -0.0100109789219993 0.0415534505391579 TRUE TRUE TRUE 12.5 1 FALSE FALSE FALSE chr2_-_20912276_20912301 ENSMUST00000154230.8 0 chr2:20892177-20914631 0 25 GATGAAGAGAATGGAAACAGAGGAG 1 90.2818702001 3.5738276161 1.99174010618e-11 chr2_-_20912276_20912301|90.2818702001|3.5738276161 3.09763326100665e-12 IN ENSMUST00000154230 Annotated NA Included I1 1 5.67242264528734e-46 -4.80827428119439e-46 -1.6425189696854e-45 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_22950183_22950210 ENSMUST00000149719.7 1 chr2:22946761-22953434 1 27 GCTTCGTGGCCAGGGTGCAGGAAAACA 1 79.2851817605 5.82074189571 0 chr2_-_22950183_22950210|79.2851817605|5.82074189571 0 IN ENSMUST00000149719 Novel Alt5 Excluded E2 3 -0.000391744300558644 -0.0014948863223454 -0.00163318829691436 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_22963213_22963228 ENSMUST00000126112.7 4949 chr2:22962501-22971082 4949 15 TGGCTAAAAGCCAAG 1 76.6876682292 5.0587367886 3.11483741022e-08 chr2_-_22963213_22963228|76.6876682292|5.0587367886 2.32136800892846e-08 IN ENSMUST00000126112 Annotated NA Neuronal N2 8 0.0650858045551351 -0.0126905636616478 0.0272789093920926 TRUE TRUE TRUE 12.5 1 12.5 1 TRUE TRUE TRUE chr2_-_24004363_24004378 ENSMUST00000051416.11 136 chr2:24003954-24009008 136 15 TTCCTTGGCTGGCTG 1 73.4648069061 0.0898421006767 1.83172230717e-08 chr2_-_24004363_24004378|73.4648069061|0.0898421006767 1.70787788356108e-08 IN ENSMUST00000051416 Novel NA Excluded E1 6 7.75612441039092e-05 -0.000205250398094426 0.00150847309384025 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_24656710_24656722 ENSMUST00000070864.13 496 chr2:24654480-24657290 496 12 GAGCTTCATGGG 1 68.7158304245 3.597062435 6.50528606871e-07 chr2_-_24656710_24656722|68.7158304245|3.597062435 6.47968339206884e-07 IN ENSMUST00000070864 Annotated NA Neuro-Muscular NM5 7 0.00160426533966697 -0.0241421936892558 0.0269968076053563 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_25248045_25248054 ENSMUST00000228052.1 1 chr2:25246595-25248121 1 9 GAGCAGAAG 1 78.7094143258 2.35107687044 2.25452029073e-05 chr2_-_25248045_25248054|78.7094143258|2.35107687044 1.28180077743067e-05 IN ENSMUST00000228052 Novel Alt3 Excluded E2 3 0.000269016801763424 -0.000634899788915191 1.98078837076292e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_25365059_25365085 ENSMUST00000152537.1 5 chr2:25364687-25365326 5 26 GTTTCCGACAGATTTCTCTGAACAAG 1 82.1171316603 2.78706664431 0 chr2_-_25365059_25365085|82.1171316603|2.78706664431 0 IN ENSMUST00000152537 Novel Alt3 Excluded E2 3 -0.00203822920905142 -0.000156831058718934 0.00103274890494559 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_25460621_25460624 ENSMUST00000133919.7 1 chr2:25460494-25460654 1 3 CTG 1 63.848530904 -0.39585714122 0.00929519400298 chr2_-_25460621_25460624|63.848530904|-0.39585714122 0.00929433468048713 IN ENSMUST00000133919 Novel NA Excluded E3 2 -0.00272957227424379 0.00306227359914614 0.000210399437283854 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_25460654_25460667 ENSMUST00000135915.7 1 chr2:25460494-25460786 1 13 CCTGGCGAGGCTC 1 77.06107461 0.615588228054 1.60071066402e-08 chr2_-_25460654_25460667|77.06107461|0.615588228054 1.14327862732466e-08 IN ENSMUST00000135915 Novel Alt5 Excluded E1 6 0.000437091928561081 -0.00102689678084309 -3.55756111299121e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_25467319_25467345 ENSMUST00000114259.2 0 chr2:25466831-25467817 0 26 ATAAGTGCATTCAAGAGTAAACGCAG 1 88.5780460595 0.503499995762 2.12274642308e-13 chr2_-_25467319_25467345|88.5780460595|0.503499995762 3.33066907387547e-14 IN ENSMUST00000114259 Annotated Alt3 Excluded E4 11 -0.00274522521641456 -0.000779631751489767 0.0170630149268494 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_26366408_26366436 ENSMUST00000114115.8 0 chr2:26366037-26367190 0 28 GCATCCTCTAATGCCAAGAACAACACAG 1 84.0528371928 0.309906247305 0 chr2_-_26366408_26366436|84.0528371928|0.309906247305 0 IN ENSMUST00000114115 Annotated NA Included I1 1 3.83883959681271e-35 -2.41248337117466e-34 -1.085881269174e-34 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_26400885_26400908 ENSMUST00000144011.2 0 chr2:26400492-26401600 0 23 GGACCTCATCTGGTTCTGCTCAG 1 81.9519558743 4.47685186841 1.53619339471e-11 chr2_-_26400885_26400908|81.9519558743|4.47685186841 5.02464736484853e-12 IN ENSMUST00000144011 Annotated Alt5 Excluded E2 3 8.92775485374401e-05 0.00199088587952161 0.00128397601764736 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_26668336_26668363 ENSMUST00000028283.1 0 chr2:26667897-26668564 0 27 ATCGGTGTATTCCCATACATGACAGTG 1 87.5356155973 -0.0609677430963 0 chr2_-_26668336_26668363|87.5356155973|-0.0609677430963 0 IN ENSMUST00000028283 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_-_27225171_27225201 ENSMUST00000091224.10 19 chr2:27225082-27227076 19 30 CATCACCAGATGAGGACCAAGTGCTCACTT 1 73.0355708334 -0.0773529427893 0 chr2_-_27225171_27225201|73.0355708334|-0.0773529427893 0 IN ENSMUST00000091224 Novel NA Excluded E1 6 -0.000130728774093911 0.00121625760201787 -0.000141564762029687 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_27278596_27278618 ENSMUST00000185188.7 0 chr2:27277343-27279190 0 22 GATGCTCCTGGAGCAGGACCAG 1 90.1752517161 0.952000012585 1.03511865746e-10 chr2_-_27278596_27278618|90.1752517161|0.952000012585 1.60707003260541e-11 IN ENSMUST00000185188 Annotated NA Included I1 1 -1.66420386086399e-10 1.68518989173018e-09 5.32721000916975e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_27279190_27279207 ENSMUST00000185188.7 0 chr2:27278618-27281900 0 17 GTTCACCTGCAGATGTG 1 88.117356153 1.50290477542 1.89815164253e-07 chr2_-_27279190_27279207|88.117356153|1.50290477542 3.03235444532035e-08 IN ENSMUST00000185188 Annotated NA Included I1 1 -2.57117755710036e-11 6.51174161131941e-10 1.61605051203628e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_27284838_27284853 ENSMUST00000056176.7 434 chr2:27283418-27285632 434 15 TCTCATGGGAAGATG 1 79.8430643589 3.94657897636 7.98536348157e-09 chr2_-_27284838_27284853|79.8430643589|3.94657897636 3.76885878061728e-09 IN ENSMUST00000056176 Annotated NA Neuronal N1 18 0.0728539366925425 0.027587127324051 -0.00447434435339807 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr2_-_27300429_27300444 ENSMUST00000056176.7 454 chr2:27299472-27302007 454 15 ATCAGATACATGCAG 1 86.5268832051 4.32600001422 9.15315467864e-09 chr2_-_27300429_27300444|86.5268832051|4.32600001422 1.61843516366389e-09 IN ENSMUST00000056176 Annotated NA Neuronal N1 18 0.0694880429927678 0.0258612943530493 -0.00830736195013536 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr2_-_29204897_29204924 ENSMUST00000048455.8 0 chr2:29200948-29207417,chr2:29197149-29207200,chr2:29197149-29207391,chr2:29198915-29207417,chr2:29204327-29207417,chr2:29197149-29207417 0 27 GTGCGGCCGCGGGCTCCGCCTTTGGCA 1 81.2567260191 2.40625803341 0 chr2_-_29204897_29204924|81.2567260191|2.40625803341 0 IN ENSMUST00000048455 Annotated NA Included I1 1 6.0139044733543e-06 -2.91157338782159e-05 -1.29359709548572e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_30174267_30174286 ENSMUST00000142669.7 29 chr2:30174185-30174921 29 19 TATCCCTCCTGACCCTGAG 1 80.6728102806 -0.720956520258 1.01323394119e-11 chr2_-_30174267_30174286|80.6728102806|-0.720956520258 4.14079881494445e-12 IN ENSMUST00000142669 Novel NA Excluded E1 6 5.19107196351577e-05 -0.000348150688894079 -0.000188568019776589 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_30346058_30346066 ENSMUST00000028214.14 50 chr2:30345939-30346352 50 8 GGTGCCAT 1 80.022810417 1.66816666598 2.39011776295e-05 chr2_-_30346058_30346066|80.022810417|1.66816666598 1.09379332399184e-05 IN ENSMUST00000028214 Novel NA Excluded E2 3 0.00924228555942021 0.0014229014513853 0.0168387089007756 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_30346058_30346073 ENSMUST00000028214.14 4012 chr2:30345939-30346352 4012 15 CTCCCAGGGTGCCAT 1 79.8833570307 1.81784211256 1.43336364999e-09 chr2_-_30346058_30346073|79.8833570307|1.81784211256 6.71858457756969e-10 IN ENSMUST00000028214 Annotated NA Neuronal N1 18 0.0706700160996008 0.0179090049080989 0.0207274959489059 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_30347080_30347104 ENSMUST00000100215.10 0 chr2:30346700-30348554,chr2:30346700-30350287 0 24 CTTTGGAACGATGAAGTCGACAAG 1 83.2253355073 3.04296430121 6.48725517749e-12 chr2_-_30347080_30347104|83.2253355073|3.04296430121 1.72162284428623e-12 IN ENSMUST00000100215 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_30349225_30349237 ENSMUST00000100215.10 4133 chr2:30348617-30350287 4133 12 TGTGAGGGCGAT 1 73.7914295933 4.27543751895 3.85101810552e-07 chr2_-_30349225_30349237|73.7914295933|4.27543751895 3.54544423819547e-07 IN ENSMUST00000100215 Annotated NA Neuronal N1 18 0.074688408445084 0.0315002105972108 0.0435927910965676 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr2_-_30796545_30796566 ENSMUST00000131937.7 0 chr2:30796283-30797867 0 21 TCCGGCAGAATATCTTTCCGA 1 77.5676159889 0.242440004796 3.54475560016e-10 chr2_-_30796545_30796566|77.5676159889|0.242440004796 2.37622921339664e-10 IN ENSMUST00000131937 Annotated Alt3 Excluded E2 3 0.00204842366231711 0.00283243051009322 0.00877519350060115 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_31044881_31044896 ENSMUST00000113559.9 593 chr2:31040514-31052984,chr2:31040514-31054023 492,101 15 CTTTCTCTCAAGCTG 1 77.209401361 5.06905263349 4.52964731279e-08 chr2_-_31044881_31044896|77.209401361|5.06905263349 3.17783467318478e-08 IN ENSMUST00000113559 Annotated NA Neuro-Muscular NM2 9 0.061407749260727 -0.0505084596460231 0.0357405751123882 TRUE TRUE TRUE 12.5 1 TRUE TRUE FALSE chr2_-_32315335_32315347 ENSMUST00000113352.8 0 chr2:32315060-32315798 0 12 GACAAAGAGAAA 1 79.6884537464 2.3478749916 4.30336185774e-05 chr2_-_32315335_32315347|79.6884537464|2.3478749916 2.08522040443526e-05 IN ENSMUST00000113352 Annotated NA Included I1 1 -7.70096539766896e-23 4.98269162438159e-22 2.6864486031492e-22 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_32323178_32323190 ENSMUST00000091089.11 950 chr2:32320617-32323421 950 12 GATGAGATTCTG 1 87.1176007057 4.81218756735 6.49131623898e-07 chr2_-_32323178_32323190|87.1176007057|4.81218756735 1.09667188774587e-07 IN ENSMUST00000091089 Annotated NA Neuronal N2 8 0.0723709845850247 0.0103748222399516 -0.0422323755949892 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE TRUE chr2_-_32946091_32946121 ENSMUST00000028132.13 0 chr2:32945973-32947790 0 30 AATCGGTTCTCCGACTACGAGAAGCGGAAG 1 87.3622915074 1.88497060609 0 chr2_-_32946091_32946121|87.3622915074|1.88497060609 0 IN ENSMUST00000028132 Annotated NA Included I1 1 5.60966361744804e-43 -1.12452415112256e-42 -1.43264794832487e-42 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_33041442_33041469 ENSMUST00000102810.9 0 chr2:33034785-33045487 0 27 GACTTGCTGGTTCTGGAAGAGCAGGAG 1 90.2520391217 4.3432904107 0 chr2_-_33041442_33041469|90.2520391217|4.3432904107 0 IN ENSMUST00000102810 Annotated NA Included I1 1 -1.38018332313412e-20 5.1070287568275e-20 3.29630917542442e-20 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_34704516_34704530 ENSMUST00000128855.2 0 chr2:34704392-34704635,chr2:34704452-34706689 0 14 GGGCCTCTGCTGTG 1 85.1031742719 3.24261111021 6.14672711508e-07 chr2_-_34704516_34704530|85.1031742719|3.24261111021 1.25741245304845e-07 IN ENSMUST00000128855 Annotated Alt3 Excluded E2 3 -0.000556229181839026 -0.00019833312329036 -0.00217191882406999 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_34780486_34780495 ENSMUST00000145903.7 18 chr2:34779529-34780596 18 9 GGTTTCTCT 1 70.0191101893 0.0581538465161 1.57057006795e-05 chr2_-_34780486_34780495|70.0191101893|0.0581538465161 1.55585707869443e-05 IN ENSMUST00000145903 Novel NA Excluded E1 6 6.80813945694785e-06 1.9889791755381e-05 2.89015260387718e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_34799422_34799430 ENSMUST00000145903.7 48 chr2:34797433-34799750 48 8 GTCCATTG 1 84.1331117961 0.227916668955 0.000137379272905 chr2_-_34799422_34799430|84.1331117961|0.227916668955 3.18741032638847e-05 IN ENSMUST00000145903 Missing in GENCODE NA Excluded E2 3 0.00553293213692035 0.000368096148546684 0.00735297037693891 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_37682773_37682799 ENSMUST00000135488.1 2 chr2:37647285-37703191 2 26 CTGAACTGGCTGCCAGTGAGCTTCAG 1 81.6235723248 0.178333331148 0 chr2_-_37682773_37682799|81.6235723248|0.178333331148 0 IN ENSMUST00000135488 Novel NA Excluded E1 6 2.22133221054666e-05 -0.000299685910957364 4.4140174344481e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_4648096_4648123 ENSMUST00000035721.13 879 chr2:4645673-4648240 879 27 CCTGTAAGTGAGAAGCCTTCTGGAGAG 1 75.323483346 3.32899998237 0 chr2_-_4648096_4648123|75.323483346|3.32899998237 0 IN ENSMUST00000035721 Annotated NA Neuronal N6 15 0.0126722731881361 -0.00533763327597602 0.0521444805652866 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_52465893_52465913 ENSMUST00000102760.9 0 chr2:52465678-52467143,chr2:52465678-52467243 0 20 CAAAACAGAAGCAGAAAGTG 1 84.5675614022 3.99012498433 1.31058186525e-09 chr2_-_52465893_52465913|84.5675614022|3.99012498433 2.8669855378638e-10 IN ENSMUST00000102760 Annotated NA Included I1 1 -2.87204950591265e-05 0.000133336932464675 6.33533927210762e-05 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr2_-_52719780_52719795 ENSMUST00000127316.7 1 chr2:52716571-52719901 1 15 CTTCTTGGAGCTTGT 1 63.7199879585 4.30247363448 1.20453477193e-08 chr2_-_52719780_52719795|63.7199879585|4.30247363448 1.20443499618261e-08 IN ENSMUST00000127316 Novel Alt3 Excluded E2 3 4.64530098402067e-05 -0.00070762290974469 0.0014145423465583 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_53157892_53157917 ENSMUST00000076313.12 0 chr2:53156985-53159262 0 25 CCATGATCAAAGCTGAAGAAAGCAG 1 86.1704984929 3.54748275465 1.99662508749e-12 chr2_-_53157892_53157917|86.1704984929|3.54748275465 3.64486218984439e-13 IN ENSMUST00000076313 Annotated NA Included I1 1 -4.57931972040107e-140 -1.43690851389886e-140 -9.36169149857947e-140 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_53175015_53175032 ENSMUST00000076313.12 0 chr2:53160886-53175143,chr2:53160886-53176385 0 17 GTGCAGCATCTGGTGCA 1 83.2049647477 1.21052382842 8.28643917483e-07 chr2_-_53175015_53175032|83.2049647477|1.21052382842 2.2061474691526e-07 IN ENSMUST00000076313 Annotated Alt3 Included I2 10 -0.000722739842545631 -0.000435997328805895 0.00108736583351031 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_57108722_57108739 ENSMUST00000183542.7 24 chr2:57108618-57109062 24 17 GTCCAACCCAGTGGAGG 1 77.2964086731 4.93785713116 9.61790647125e-11 chr2_-_57108722_57108739|77.2964086731|4.93785713116 6.67536026455195e-11 IN ENSMUST00000183542 Missing in GENCODE Alt3 Excluded E2 3 0.000727696167746335 -0.00194718502262347 0.000197714148949018 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_5803946_5803975 ENSMUST00000043864.8 0 chr2:5798489-5804910 0 29 TTGTGTTCGATATATACAGGGACAGTAGG 1 91.2310094889 3.54036361792 0 chr2_-_5803946_5803975|91.2310094889|3.54036361792 0 IN ENSMUST00000043864 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_59933411_59933438 ENSMUST00000112550.7 347 chr2:59932170-59933670 347 27 GAGTTGGAGAGGCATAGACTAGATATG 1 82.6722521218 6.00438710182 0 chr2_-_59933411_59933438|82.6722521218|6.00438710182 0 IN ENSMUST00000112550 Annotated NA Neuro-Muscular NM5 7 0.0105487804735803 -0.0259369922513859 0.0502696185001823 TRUE TRUE FALSE FALSE FALSE FALSE chr2_-_60255070_60255097 ENSMUST00000028356.8 2731 chr2:60252491-60257032 2731 27 TCCCATATGACAAGAAGTATTTATCAG 1 87.3644321635 2.14451614407 0 chr2_-_60255070_60255097|87.3644321635|2.14451614407 0 IN ENSMUST00000028356 Annotated NA Included I2 10 0.000750000356470715 0.000144718686401144 0.0103722570142845 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_62845314_62845338 ENSMUST00000112452.1 277 chr2:62837280-62850349 277 24 TTTCACGTTCCTGGATGGCAGGGG 1 72.8316215508 5.08939287705 0 chr2_-_62845314_62845338|72.8316215508|5.08939287705 0 IN ENSMUST00000112452 Novel NA Neuronal N5 14 0.0343840824341069 0.0663814296630033 0.0386045842489154 TRUE TRUE TRUE 11.5 1 FALSE FALSE FALSE chr2_-_62845753_62845774 ENSMUST00000112452.1 1822 chr2:62837280-62850349 1822 21 ACAATGGTCGAAATGTCAAAG 1 75.2850551165 4.19019999862 1.15853993066e-11 chr2_-_62845753_62845774|75.2850551165|4.19019999862 9.805156686582e-12 IN ENSMUST00000112452 Annotated NA Neuronal N5 14 0.0276753274441344 0.0545761609329233 0.0793006857628146 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr2_-_65487853_65487881 ENSMUST00000066432.11 18 chr2:65484466-65494922 18 28 TATCACAACTCTGGCAATATAAATGAAA 1 79.1779072691 1.43415624602 0 chr2_-_65487853_65487881|79.1779072691|1.43415624602 0 IN ENSMUST00000066432 Novel NA Excluded E1 6 -2.33995747774888e-05 0.000143023629983133 0.00201710345983872 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_66724064_66724093 ENSMUST00000042792.6 11 chr2:66714059-66726153 11 29 GTGCTTCTCAGCCATTCGGTACTCCTCAG 1 88.8645832351 None 0 chr2_-_66724064_66724093|88.8645832351|None 0 IN ENSMUST00000042792 Novel NA FALSE TRUE FALSE FALSE FALSE FALSE chr2_-_68314363_68314393 ENSMUST00000102715.3 0 chr2:68309054-68314480 0 30 TCACGAAGAGTAAAAGAAGAGAACTCAGAG 1 86.4206790417 2.96697060545 0 chr2_-_68314363_68314393|86.4206790417|2.96697060545 0 IN ENSMUST00000102715 Annotated NA Included I1 1 -9.75349245143257e-72 9.77369989826486e-72 2.53640321328122e-71 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_69327976_69327998 ENSMUST00000102710.9 0 chr2:69325280-69329269,chr2:69325195-69329269 0 22 ATAACAATGATAAGAAATCAAG 1 86.0601511241 1.41911538733 2.25270468945e-10 chr2_-_69327976_69327998|86.0601511241|1.41911538733 4.15537604325777e-11 IN ENSMUST00000102710 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_-_6951841_6951871 ENSMUST00000002176.12 2 chr2:6721613-6962378 2 30 CATATCCCAGGCAGTATTTCAACCAGATAA 1 80.2256548448 -0.178617651643 0 chr2_-_6951841_6951871|80.2256548448|-0.178617651643 0 IN ENSMUST00000002176 Novel NA Excluded E1 6 1.20484325736731e-14 -2.36823632811187e-15 -2.88556663819873e-14 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_73306427_73306438 ENSMUST00000058615.9 0 chr2:73306341-73306854 0 11 AAAACAAAGAG 1 71.1901526505 3.10126670102 0.000118725304908 chr2_-_73306427_73306438|71.1901526505|3.10126670102 0.000116426248691126 IN ENSMUST00000058615 Annotated NA Included I1 1 2.24709697846021e-18 4.52172576053215e-17 7.44048339264805e-19 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_73367480_73367509 ENSMUST00000129184.1 0 chr2:73364252-73368313 0 29 CTCCCTGTACAGCACCTATCTGTGGACAG 1 89.2992745282 3.9412423843 0 chr2_-_73367480_73367509|89.2992745282|3.9412423843 0 IN ENSMUST00000129184 Annotated Alt5 Excluded E3 2 -0.00338228850062273 -0.000224586897750976 -0.00233677105452511 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_73625043_73625050 ENSMUST00000166199.7 3 chr2:73624192-73631745 3 7 ATTGTGG 1 73.2914828162 4.66654548591 0.00179653742916 chr2_-_73625043_73625050|73.2914828162|4.66654548591 0.00168520104130965 IN ENSMUST00000166199 Novel Alt3 Excluded E1 6 1.58805781781108e-05 0.000116993082247311 0.000430404422512439 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_73710454_73710482 ENSMUST00000124450.1 0 chr2:73707032-73716363 0 28 AAAACAGACCAAAGTATTATGGAAGAGA 1 76.7288931223 4.531906232 0 chr2_-_73710454_73710482|76.7288931223|4.531906232 0 IN ENSMUST00000124450 Annotated Alt5 Excluded E3 2 0.00402000663063378 0.0048019090878069 0.010110065129744 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_73870622_73870652 ENSMUST00000112010.8 3 chr2:73863238-73873669 3 30 AGAAAATCCCAGGCTCATATAGCTTCACTG 1 78.4247070659 0.250147050794 0 chr2_-_73870622_73870652|78.4247070659|0.250147050794 0 IN ENSMUST00000112010 Novel Alt5 Excluded E1 6 0.000563575842624895 -0.000528833526557376 0.00160287271602019 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_74554987_74555001 ENSMUST00000134641.7 1 chr2:74551101-74568940 1 14 AACAGAGAGAAATA 1 79.1495953659 3.40738894873 2.59329647645e-07 chr2_-_74554987_74555001|79.1495953659|3.40738894873 1.37446263259733e-07 IN ENSMUST00000134641 Novel Alt5 Excluded E1 6 0.000210725136226726 -0.00133683152182095 0.000319445576228201 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_76867882_76867909 ENSMUST00000099981.8 0 chr2:76818816-76906253,chr2:76867481-76868007 0 27 AAATAAAACTTGAGATGAAGCCTCCTG 1 92.2509285355 3.57825808419 0 chr2_-_76867882_76867909|92.2509285355|3.57825808419 0 IN ENSMUST00000099981 Annotated NA Included I2 10 -0.0101421975470156 0.00728499212235011 -0.017933374533283 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_77228974_77229004 ENSMUST00000102660.7 8 chr2:77218202-77230663 8 30 CCCAGCTGCTTCAGGATGATGGGGAATGTG 1 80.670255304 None 0 chr2_-_77228974_77229004|80.670255304|None 0 IN ENSMUST00000102660 Novel NA Excluded E1 6 0.000227616430274492 0.000112114540941664 0.00117831774031545 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_79341486_79341512 ENSMUST00000152549.7 24 chr2:79341401-79342161 24 26 AAAATCACAGAGATCTGCAGAATCTG 1 83.4300443775 1.09470001198 0 chr2_-_79341486_79341512|83.4300443775|1.09470001198 0 IN ENSMUST00000152549 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr2_-_80571212_80571226 ENSMUST00000028386.11 22 chr2:80570229-80580857 22 14 GACAAGTTTGGAAG 1 72.5002341774 6.01294447316 1.54395808694e-07 chr2_-_80571212_80571226|72.5002341774|6.01294447316 1.48080109063642e-07 IN ENSMUST00000028386 Novel NA Excluded E2 3 0.00595283480006316 0.00135953313204242 0.0102964505999357 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_80571212_80571230 ENSMUST00000028386.11 1162 chr2:80570229-80580857 1162 18 CAAGGACAAGTTTGGAAG 1 74.8877562516 6.06445458802 6.02881300438e-10 chr2_-_80571212_80571230|74.8877562516|6.06445458802 5.24245202804252e-10 IN ENSMUST00000028386 Annotated NA Neuronal N3 17 0.0463237568200749 0.0179468522945638 0.037171818826791 TRUE TRUE TRUE 11.5 1 14.5 1 FALSE FALSE TRUE chr2_-_84612531_84612549 ENSMUST00000111675.7 473 chr2:84612092-84612935 473 18 ATGAGTGGTTCTCCAGAG 1 76.5078876444 3.97159090909 4.66684468847e-11 chr2_-_84612531_84612549|76.5078876444|3.97159090909 3.54533069568674e-11 IN ENSMUST00000111675 Annotated NA Neuro-Muscular NM3 19 0.0385671964982579 -0.0279547338246075 -0.078186171815735 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE TRUE FALSE chr2_-_84612531_84612549 ENSMUST00000111675.7 473 chr2:84612092-84612935 473 18 ATGAGTGGTTCTCCAGAG 1 76.5078876444 3.97159090909 4.66684468847e-11 chr2_-_84612531_84612549|76.5078876444|3.97159090909 3.54533069568674e-11 IN ENSMUST00000111675 Annotated NA Neuro-Muscular NM3 19 0.0385671964982579 -0.0279547338246075 -0.078186171815735 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE TRUE FALSE chr2_-_84612531_84612549 ENSMUST00000111675.7 473 chr2:84612092-84612935 473 18 ATGAGTGGTTCTCCAGAG 1 76.5078876444 3.97159090909 4.66684468847e-11 chr2_-_84612531_84612549|76.5078876444|3.97159090909 3.54533069568674e-11 IN ENSMUST00000111675 Annotated NA Neuro-Muscular NM3 19 0.0385671964982579 -0.0279547338246075 -0.078186171815735 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE TRUE FALSE chr2_-_84612531_84612549 ENSMUST00000111675.7 473 chr2:84612092-84612935 473 18 ATGAGTGGTTCTCCAGAG 1 76.5078876444 3.97159090909 4.66684468847e-11 chr2_-_84612531_84612549|76.5078876444|3.97159090909 3.54533069568674e-11 IN ENSMUST00000111675 Annotated NA Neuro-Muscular NM3 19 0.0385671964982579 -0.0279547338246075 -0.078186171815735 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE TRUE FALSE chr2_-_90449972_90449981 ENSMUST00000111495.8 0 chr2:90449863-90450814 0 9 ACCTAAAAA 1 78.2808687873 2.71169233437 0.00357174435352 chr2_-_90449972_90449981|78.2808687873|2.71169233437 0.00216719074311167 IN ENSMUST00000111495 Annotated NA Included I1 1 -3.13803670864858e-09 4.68960477078652e-06 -2.12304186881337e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_90474970_90474989 ENSMUST00000111495.8 0 chr2:90471335-90478966,chr2:90471335-90580155 0 19 GTCCTGTGCGCAGGTGCGG 1 89.3305557285 0.641521738518 2.76777424313e-08 chr2_-_90474970_90474989|89.3305557285|0.641521738518 4.28621016457242e-09 IN ENSMUST00000111495 Annotated NA Included I1 1 -5.46612286823959e-08 -6.30677830648377e-06 3.11090739561465e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_91140808_91140817 ENSMUST00000111373.7 1182 chr2:91140626-91142755 1182 9 GAGCGGAAG 1 78.6149837709 5.85653858918 3.15303602288e-05 chr2_-_91140808_91140817|78.6149837709|5.85653858918 1.81907318135277e-05 IN ENSMUST00000111373 Annotated NA Neuro-Muscular NM2 9 0.0551412451142253 -0.00881766877378396 -0.0171474713138044 TRUE TRUE FALSE FALSE FALSE FALSE chr2_-_91158461_91158488 ENSMUST00000154028.7 0 chr2:91158143-91159204 0 27 AGGACTGATCAAGACTCTGTCATCGGT 1 77.4686279082 2.23599998941 0 chr2_-_91158461_91158488|77.4686279082|2.23599998941 0 IN ENSMUST00000154028 Annotated Alt3 Excluded E2 3 0.00100564006059559 -0.00143191263132222 -0.00264609952855464 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_91172326_91172335 ENSMUST00000111373.7 185 chr2:91170747-91173112 185 9 TTCCTGAAG 1 75.2741792025 1.77415386129 3.50469172316e-05 chr2_-_91172326_91172335|75.2741792025|1.77415386129 2.96848369480962e-05 IN ENSMUST00000111373 Missing in GENCODE NA Excluded E1 6 0.00178203499836815 -0.00131226616436154 0.00564488414786776 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_91635170_91635195 ENSMUST00000028681.14 0 chr2:91634949-91635777 0 25 GACGTGTTCTGGGCCAAGTACACAG 1 87.4541670857 1.94910342413 7.0965455734e-13 chr2_-_91635170_91635195|87.4541670857|1.94910342413 1.17350573702879e-13 IN ENSMUST00000028681 Annotated NA Included I1 1 -5.12971181947833e-05 1.80730597495836e-05 -0.000209551187839948 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_94045432_94045442 ENSMUST00000145967.7 3 chr2:94043938-94052253 3 10 ATCTAAAGGG 1 79.7040943466 2.54650000343 3.09231566945e-05 chr2_-_94045432_94045442|79.7040943466|2.54650000343 1.4944322846322e-05 IN ENSMUST00000145967 Novel Alt3 Excluded E1 6 -0.000372325758978918 0.000280672031871295 -0.000462816095135729 TRUE FALSE FALSE FALSE FALSE FALSE chr2_-_94246063_94246077 ENSMUST00000210851.1 0 chr2:94238387-94264521 0 14 GAGTTCCCGCTTGG 1 87.0241714254 2.66988888797 9.72849491282e-05 chr2_-_94246063_94246077|87.0241714254|2.66988888797 1.65445188584634e-05 IN ENSMUST00000210851 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_+_102133089_102133098 ENSMUST00000029454.11 160 chr3:102127986+102133376 160 9 ACTACAGGA 1 68.4980014041 0.765230780324 8.01203345309e-05 chr3_+_102133089_102133098|68.4980014041|0.765230780324 7.98491404162549e-05 IN ENSMUST00000029454 Annotated NA Neuronal N4 13 0.0235832219378921 0.00209278777901658 0.0585286675200916 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_103075406_103075418 ENSMUST00000176440.1 95 chr3:103074117+103079028 95 12 GTCAAGGAAAAC 1 82.6839566768 2.12850000523 1.13970535132e-06 chr3_+_103075406_103075418|82.6839566768|2.12850000523 3.29778485075316e-07 IN ENSMUST00000176440 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_+_103890255_103890283 ENSMUST00000198701.4 63 chr3:103888856+103902113 63 28 AATGTGAAACTCCGAAGTCCCAAATCAG 1 85.0455837177 1.56649999518 0 chr3_+_103890255_103890283|85.0455837177|1.56649999518 0 IN ENSMUST00000198701 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_+_105705747_105705762 ENSMUST00000066610.7 131 chr3:105704825+105716368 131 15 GATTCAGACAGATAG 1 84.3849151004 0.0843684176829 4.19240668847e-08 chr3_+_105705747_105705762|84.3849151004|0.0843684176829 9.3964939162916e-09 IN ENSMUST00000066610 Missing in GENCODE NA Excluded E1 6 0.000295665759135259 0.000154919822078159 5.63762222570755e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_105965328_105965347 ENSMUST00000010278.11 2 chr3:105965152+105965764 2 19 CTTCTTTATTCTGGGCATG 1 79.8945091584 0.25178261247 8.37019342725e-12 chr3_+_105965328_105965347|79.8945091584|0.25178261247 3.91586763015539e-12 IN ENSMUST00000010278 Novel NA Excluded E1 6 0.000146024282513024 9.4043865752915e-05 0.00025225957604496 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_106114644_106114674 ENSMUST00000079132.11 0 chr3:106113409+106115166,chr3:106113409+106115033 0 30 GTCTGGCTCTTCTGCTGAATGCTCAGCTGG 1 85.313510996 1.90285292421 0 chr3_+_106114644_106114674|85.313510996|1.90285292421 0 IN ENSMUST00000079132 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_+_106733115_106733142 ENSMUST00000106737.3 0 chr3:106685133+106734357,chr3:106732614+106733336,chr3:106722106+106734357 0 27 TGTGTTTTCAGAGACCAAGAATCACAG 1 82.7410983838 2.4149032139 0 chr3_+_106733115_106733142|82.7410983838|2.4149032139 0 IN ENSMUST00000106737 Annotated Alt5 Excluded E2 3 -0.000747711112770398 0.00180524988544507 -0.00073999390504331 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_109574105_109574131 ENSMUST00000046864.13 0 chr3:109563204+109578318 0 26 AACAAGGGCCATTCAAACCACCAGAG 1 85.9451426494 2.24143325885 3.34932082069e-12 chr3_+_109574105_109574131|85.9451426494|2.24143325885 6.24833518259038e-13 IN ENSMUST00000046864 Annotated Alt5 Neuro-Muscular NM3 19 0.0491320260483508 -0.0316234373778245 -0.0580137949529776 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_114138170_114138186 ENSMUST00000092155.11 119 chr3:114133189+114138399 119 16 GCTTTCAGATGTCACT 1 80.0312694612 1.42480000574 4.7202775022e-09 chr3_+_114138170_114138186|80.0312694612|1.42480000574 2.15700068917357e-09 IN ENSMUST00000092155 Annotated NA Neuronal N3 17 0.0531114348577416 0.0102518707908194 0.0592425096466005 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr3_+_129861965_129861992 ENSMUST00000077918.6 0 chr3:129858823+129862129 0 27 AAGACCGACAGCAGAACATTCCAAAAG 1 87.9092291383 0.204225806189 0 chr3_+_129861965_129861992|87.9092291383|0.204225806189 0 IN ENSMUST00000077918 Annotated NA Included I1 1 2.19473415348454e-06 -1.7856581871695e-05 2.99464567405164e-05 TRUE TRUE FALSE FALSE FALSE FALSE chr3_+_129862129_129862150 ENSMUST00000077918.6 0 chr3:129861992+129865340 0 21 GCCTTGCACGGTCAGCTCAAG 1 90.0495054342 0.173679994643 7.55562723498e-10 chr3_+_129862129_129862150|90.0495054342|0.173679994643 1.17112874953307e-10 IN ENSMUST00000077918 Annotated NA Included I1 1 -4.46614709004691e-06 -2.72170712223572e-05 1.5566359307169e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_130388933_130388941 ENSMUST00000143830.2 0 chr3:130386919+130418800 0 8 GTCCTCCT 1 79.4159344155 2.69858333965 0.385075866993 chr3_+_130388933_130388941|79.4159344155|2.69858333965 0.195332588254666 RESCUED ENSMUST00000143830 Annotated NA Included I1 1 5.96184044759134e-06 0.000385228766631562 1.85433176908769e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_130418800_130418818 ENSMUST00000143830.2 0 chr3:130388941+130439150 0 18 GGTCAGCCTGGTCCTCAG 1 91.877004254 2.27718181502 7.3031670289e-07 chr3_+_130418800_130418818|91.877004254|2.27718181502 1.21018851717558e-07 IN ENSMUST00000143830 Annotated NA Included I1 1 2.16196977741224e-08 1.23946635326225e-05 9.8617869285117e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_130439150_130439177 ENSMUST00000143830.2 0 chr3:130418818+130439312 0 27 GGCCCTCCTGGTCCAAAAGGTGATAAG 1 90.8074012701 3.10899993753 0 chr3_+_130439150_130439177|90.8074012701|3.10899993753 0 IN ENSMUST00000143830 Annotated NA Included I1 1 -1.16726522669366e-05 -0.00013766754977192 6.08758939328051e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_130439312_130439339 ENSMUST00000143830.2 0 chr3:130439177+130475592,chr3:130439177+130474807 0 27 GGAGAACAAGGTGATCAGGGACCTCGG 1 86.4787529698 3.45367747089 0 chr3_+_130439312_130439339|86.4787529698|3.45367747089 0 IN ENSMUST00000143830 Annotated NA Included I1 1 4.19917841114125e-07 -3.81540558396783e-06 -1.04360380702198e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_130494325_130494352 ENSMUST00000143830.2 0 chr3:130479020+130496397 0 27 GGACCTCTGGGGCCTCCAGGACAAAAG 1 86.0574580406 3.05977423765 0 chr3_+_130494325_130494352|86.0574580406|3.05977423765 0 IN ENSMUST00000143830 Annotated NA Included I1 1 2.64762587465786e-08 -6.48876234455382e-07 -8.89872900129463e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_130519776_130519803 ENSMUST00000143830.2 0 chr3:130517737+130522432 0 27 GGAGAACCTGGAAAAGAAGGAGAAAAG 1 85.0110915333 2.5668064184 0 chr3_+_130519776_130519803|85.0110915333|2.5668064184 0 IN ENSMUST00000143830 Annotated NA Neuro-Muscular NM5 7 0.02568940498047 -0.0148297231114486 -0.0373801529690799 TRUE TRUE FALSE FALSE FALSE FALSE chr3_+_130559861_130559885 ENSMUST00000080335.10 0 chr3:130552961+130560818 0 24 AGAATTACCACCTTAACTGTCACG 1 80.1225926121 3.59842859421 2.78141953913e-11 chr3_+_130559861_130559885|80.1225926121|3.59842859421 1.25112142868034e-11 IN ENSMUST00000080335 Annotated NA Included I1 1 2.29634899935603e-09 -3.98928262050902e-08 -7.175144671979e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_130570308_130570335 ENSMUST00000080335.10 0 chr3:130568292+130575374 0 27 GGGCCCCATGGACTTCCTGGACCAAAG 1 78.807159445 3.83074190395 0 chr3_+_130570308_130570335|78.807159445|3.83074190395 0 IN ENSMUST00000080335 Annotated NA Included I1 1 -5.46274476379507e-06 3.87656471543112e-05 1.16281229856201e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_130584699_130584726 ENSMUST00000080335.10 0 chr3:130583323+130585682 0 27 GGCAAAGATGGAGAACCTGGTCTTGAT 1 83.4178564485 3.95070964747 0 chr3_+_130584699_130584726|83.4178564485|3.95070964747 0 IN ENSMUST00000080335 Annotated NA Non-Neuronal NN2 24 -0.0534137900062252 0.0933005550144666 0.0209707135155981 TRUE TRUE TRUE FALSE FALSE FALSE chr3_+_13473441_13473465 ENSMUST00000191806.2 4 chr3:13472792+13776824 4 24 GTTTAATGGGACGACGCCTACAAG 1 75.4883138649 0.0382500015465 0 chr3_+_13473441_13473465|75.4883138649|0.0382500015465 0 IN ENSMUST00000191806 Novel Alt5 Excluded E3 2 -0.00283287234417792 0.0124265973018559 -0.00233300807857724 TRUE TRUE FALSE FALSE FALSE FALSE chr3_+_136932010_136932040 ENSMUST00000070198.13 3641 chr3:136928619+136935028 3641 30 CTACTGTTGAGGCTATTGAGGCTGATGAAG 1 88.9131623177 5.16279409388 0 chr3_+_136932010_136932040|88.9131623177|5.16279409388 0 IN ENSMUST00000070198 Annotated NA Neuro-Muscular NM4 16 0.0290965721330211 -0.0556436055329065 0.0637242312511988 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr3_+_137422257_137422282 ENSMUST00000122064.7 0 chr3:137419091+137423423 0 25 GCACTCCAGAAAACGGAAATGATCA 1 83.2773672609 1.85220690839 3.82183173997e-12 chr3_+_137422257_137422282|83.2773672609|1.85220690839 1.00608410491532e-12 IN ENSMUST00000122064 Annotated NA Included I1 1 -2.79589799573521e-64 -1.32817260425921e-65 7.16701673787081e-65 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_138279730_138279751 ENSMUST00000159159.1 0 chr3:138277736+138282435 0 21 GTGATCAAATGCAAAGCTGCG 1 75.8263303668 3.93920000277 1.06274455902e-09 chr3_+_138279730_138279751|75.8263303668|3.93920000277 8.6152263101269e-10 IN ENSMUST00000159159 Annotated Alt3 Excluded E2 3 -0.00184736944358882 -0.000360468502161105 -0.00217656729717789 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_14107248_14107266 ENSMUST00000171075.7 1 chr3:14081240+14115692 1 18 AGATGATTTCTACAATCG 1 76.232088276 3.85195456919 1.95711891138e-09 chr3_+_14107248_14107266|76.232088276|3.85195456919 1.52862789093433e-09 IN ENSMUST00000171075 Novel Alt5 Excluded E2 3 -0.00325692146573821 0.00880019371899188 0.0076690621530932 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_145524272_145524299 ENSMUST00000029848.4 0 chr3:145524161+145537200 0 27 GGTCCACCTGGAGCACCTGGTCCAAGA 1 83.7301160239 2.41880645879 0 chr3_+_145524272_145524299|83.7301160239|2.41880645879 0 IN ENSMUST00000029848 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_+_14581135_14581158 ENSMUST00000029069.12 1 chr3:14579023+14587309 1 23 CTTAATCACTGAACTGTTAAGGA 1 76.1959733361 0.405074073554 0 chr3_+_14581135_14581158|76.1959733361|0.405074073554 0 IN ENSMUST00000029069 Novel NA Excluded E2 3 -0.00116003535004001 -0.00147858231609713 0.00133422374449869 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_154137902_154137932 ENSMUST00000089948.5 82 chr3:153973798+154171568 82 30 AAATAACAGAGTCTGAGGATCAAGATGTGG 1 80.2766853239 0.0604999971521 0 chr3_+_154137902_154137932|80.2766853239|0.0604999971521 0 IN ENSMUST00000089948 Novel NA Excluded E4 11 -0.00408088034300586 0.0276875060665685 -0.024037179865878 TRUE TRUE FALSE FALSE FALSE FALSE chr3_+_16183921_16183946 ENSMUST00000108345.8 0 chr3:16183520+16186966,chr3:16183520+16189477 0 25 AGACCTAAAGGGCAAGGAAATAAAG 1 86.733663678 5.60882756628 3.03490566012e-12 chr3_+_16183921_16183946|86.733663678|5.60882756628 5.27577981301874e-13 IN ENSMUST00000108345 Annotated NA Included I1 1 -5.44601680168429e-118 -1.01795477214707e-118 -1.06851980623141e-117 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_19671406_19671429 ENSMUST00000029139.8 0 chr3:19671157+19671529 0 23 AATGCCAAGACCCTGTTGCAAAA 1 84.0526300325 2.8529629608 4.90274487674e-12 chr3_+_19671406_19671429|84.0526300325|2.8529629608 1.15041309811659e-12 IN ENSMUST00000029139 Annotated NA Included I1 1 1.81032013019224e-06 -4.02486068590469e-07 7.6783727345042e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_28625198_28625222 ENSMUST00000160934.7 774 chr3:28623108+28630430 774 24 AGCTATAAGAAAGCTATAGATGAG 1 83.4359829718 5.74864295551 0 chr3_+_28625198_28625222|83.4359829718|5.74864295551 0 IN ENSMUST00000160934 Annotated NA Neuro-Muscular NM3 19 0.052289125447313 -0.00282348702095585 -0.0498714313808341 TRUE TRUE TRUE 11.5 1 14.5 1 FALSE FALSE TRUE chr3_+_31902903_31902925 ENSMUST00000192429.5 0 chr3:31902827+32156046 0 22 GAAGATGTGACAACTCCTGAAG 1 77.8420688157 3.49853841502 1.43923556406e-08 chr3_+_31902903_31902925|77.8420688157|3.49853841502 9.29764554236101e-09 IN ENSMUST00000192429 Annotated Alt5 Excluded E3 2 -0.00350285826815158 0.00950574829658702 0.0121295538384384 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_32050160_32050168 ENSMUST00000119310.7 62 chr3:31902925+32156046 62 8 AGAGAAAG 1 81.4906790137 None 0.0149732417905 chr3_+_32050160_32050168|81.4906790137|None 0.00530322667743632 IN ENSMUST00000119310 Novel NA Excluded E1 6 -0.000187930906237404 0.00042989462591075 0.000516732013306318 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_32746637_32746655 ENSMUST00000127477.7 91 chr3:32746514+32747727 91 18 ACCTTCTTTGGAAGAAAG 1 71.4943675022 0.365136361258 6.77005118632e-11 chr3_+_32746637_32746655|71.4943675022|0.365136361258 6.61309895733098e-11 IN ENSMUST00000127477 Novel NA Excluded E1 6 1.546588527816e-05 5.57155911948345e-06 8.29993353419124e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_32914987_32915014 ENSMUST00000072312.11 0 chr3:32914221+32915668 0 27 ACCGCTTGATGAACCAGTTGATAGACC 1 78.537160564 2.64551611137 0 chr3_+_32914987_32915014|78.537160564|2.64551611137 0 IN ENSMUST00000072312 Annotated NA Included I1 1 8.78904719856272e-20 -6.86752532859259e-20 -2.5560894050342e-19 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_40810276_40810300 ENSMUST00000203295.2 0 chr3:40809108+40810661 0 24 GTGAGCATCCTTGATTCAGAGGAG 1 86.2176274535 3.99424999693 5.41788836017e-12 chr3_+_40810276_40810300|86.2176274535|3.99424999693 9.84656800540051e-13 IN ENSMUST00000203295 Annotated Alt3 Excluded E2 3 -0.00061969088862954 0.0010508412810865 -0.00148612633029677 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_40919387_40919405 ENSMUST00000205065.2 0 chr3:40917067+40923412 0 18 GAAGCCCAAGGACCAAGT 1 77.4285769233 4.16659093314 9.20117557701e-08 chr3_+_40919387_40919405|77.4285769233|4.16659093314 6.28031664451356e-08 IN ENSMUST00000205065 Annotated NA Included I1 1 2.40871469278319e-10 -1.72721643697451e-10 -5.03353960410974e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_51438338_51438363 ENSMUST00000192523.5 0 chr3:51436299+51463263 0 25 AAACCCTGGCTATGAAAGGATTAAC 1 66.798665736 4.83203446094 2.39230857346e-11 chr3_+_51438338_51438363|66.798665736|4.83203446094 2.38994379841984e-11 IN ENSMUST00000192523 Annotated Alt3 Excluded E2 3 -0.00121274455369016 -0.000191716346184571 -0.000890831828155341 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_54693102_54693126 ENSMUST00000199652.4 0 chr3:54692894+54695122 0 24 GTATTTCTGGAAAATCGCTGCAAG 1 76.8889934818 0.24039285773 7.81597009336e-12 chr3_+_54693102_54693126|76.8889934818|0.24039285773 5.69544411632705e-12 IN ENSMUST00000199652 Annotated Alt3 Excluded E1 6 0.00019796866629725 4.30900911981728e-05 0.00118344886549137 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_54695122_54695138 ENSMUST00000200441.4 0 chr3:54693208+54716637 0 16 TATAGAAGAAGACATG 1 75.8076168894 0.917149990983 5.45031768484e-06 chr3_+_54695122_54695138|75.8076168894|0.917149990983 4.42547479651001e-06 IN ENSMUST00000200441 Annotated Alt3 Excluded E2 3 -0.000444146171165727 -0.000336773806806347 -5.0846030192629e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_54713175_54713202 ENSMUST00000197502.4 0 chr3:54695132+54716637,chr3:54693208+54716637,chr3:54712249+54713732,chr3:54695138+54716637 0 27 CTCCTCTGCTGATGACCATTCAAACTG 1 82.726493585 1.77522580963 0 chr3_+_54713175_54713202|82.726493585|1.77522580963 0 IN ENSMUST00000197502 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_+_57748017_57748034 ENSMUST00000041826.13 5 chr3:57736200+57764256 5 17 CCCCCATAGTATCCAAT 1 74.0984411086 -0.0196190433843 6.37442099105e-09 chr3_+_57748017_57748034|74.0984411086|-0.0196190433843 5.78935854811391e-09 IN ENSMUST00000041826 Novel NA Excluded E1 6 -0.000106748466632282 1.46500656976782e-06 0.00128615660801207 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_57833485_57833500 ENSMUST00000200497.4 2 chr3:57833044+57833572 2 15 CTTATCATTGCAAGT 1 71.2607597748 4.86526316561 1.85173121281e-09 chr3_+_57833485_57833500|71.2607597748|4.86526316561 1.81433157386834e-09 IN ENSMUST00000200497 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_+_60616060_60616083 ENSMUST00000192807.5 91 chr3:60615773+60621422 91 23 CTGTGTTATGATGCTCTCCTGCT 1 72.8366624506 1.35259259547 0 chr3_+_60616060_60616083|72.8366624506|1.35259259547 0 IN ENSMUST00000192807 Novel NA Excluded E1 6 0.000216827603394468 -0.000107379265448368 0.00244092353922554 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_68615068_68615092 ENSMUST00000182006.3 139 chr3:68596268+68616439 139 24 CTTCCAGAAAGTGGAGAAAGGAAG 1 84.1850744964 -0.073428569029 0 chr3_+_68615068_68615092|84.1850744964|-0.073428569029 0 IN ENSMUST00000182006 Novel NA Excluded E1 6 0.000104903645258931 3.03214023381017e-05 0.000182040227396996 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_69007188_69007197 ENSMUST00000107803.6 2 chr3:69006213+69007263,chr3:69006213+69009533 1,1 9 AGCCTCCAG 1 79.6035180371 2.06476919582 1.54523848839e-05 chr3_+_69007188_69007197|79.6035180371|2.06476919582 7.59582414011639e-06 IN ENSMUST00000107803 Novel Alt3 Excluded E1 6 -0.000264160677519475 -0.000137765543358114 -0.00094671731610729 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_69724256_69724270 ENSMUST00000143041.7 1 chr3:69722466+69729337 1 14 CTTGTGCTGTGAAT 1 73.821226145 3.79805556395 9.9724270064e-08 chr3_+_69724256_69724270|73.821226145|3.79805556395 9.16969833397729e-08 IN ENSMUST00000143041 Novel Alt3 Excluded E1 6 0.000395707931215976 0.000214581934417809 0.00100597343188092 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_73511291_73511314 ENSMUST00000192642.1 35 chr3:73239410+73559448 35 23 ATGTCACCCCTGAACAAGTCCAG 1 88.5170028343 -0.119296302122 0 chr3_+_73511291_73511314|88.5170028343|-0.119296302122 0 IN ENSMUST00000192642 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_+_75558424_75558443 ENSMUST00000029423.8 1 chr3:75557642+75613079 1 19 CTTTCCTCTATTGAAGAGA 1 65.7753630717 0.416782600927 7.87480303188e-10 chr3_+_75558424_75558443|65.7753630717|0.416782600927 7.87126919199466e-10 IN ENSMUST00000029423 Novel NA Excluded E1 6 3.68183907096392e-15 -5.0192678361492e-14 -1.50365356345477e-14 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_76620479_76620506 ENSMUST00000038364.14 0 chr3:76593577+76628912 0 27 TAGCTAACATATTATGGAGAGAAGAAG 1 73.4951558852 4.57432249285 0 chr3_+_76620479_76620506|73.4951558852|4.57432249285 0 IN ENSMUST00000038364 Annotated NA Included I1 1 3.53109273841702e-06 -1.7975789883505e-05 -7.90157948995354e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_84689575_84689603 ENSMUST00000107682.1 0 chr3:84684590+84690543 0 28 ATGAACTTGGAGGTGAAACCCTGAAAGT 1 82.502864077 1.70162498532 0 chr3_+_84689575_84689603|82.502864077|1.70162498532 0 IN ENSMUST00000107682 Annotated NA Included I1 1 -6.03916417418172e-06 -1.86970196492629e-05 -2.72657436103567e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_87381760_87381781 ENSMUST00000163661.7 0 chr3:87376525+87384587,chr3:87381384+87384587 0 21 CTCTACCGTGTGAACCTGCTG 1 86.2331644735 0.71655999776 7.22593540559e-10 chr3_+_87381760_87381781|86.2331644735|0.71655999776 1.31131883129854e-10 IN ENSMUST00000163661 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_+_87386745_87386770 ENSMUST00000163661.7 0 chr3:87385315+87389339,chr3:87385315+87391470,chr3:87385779+87389339 0 25 GAAGACAATCAGAGGATCCAGTCAG 1 91.8347780863 0.90462068388 3.13615799996e-12 chr3_+_87386745_87386770|91.8347780863|0.90462068388 5.18363130197486e-13 IN ENSMUST00000163661 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr3_+_87683149_87683164 ENSMUST00000212015.1 154 chr3:87618792+87683485,chr3:87681892+87683485 12,142 15 CCCCATTGCATCCTG 1 82.6026462722 2.30094736501 5.72617864236e-09 chr3_+_87683149_87683164|82.6026462722|2.30094736501 1.67911728965464e-09 IN ENSMUST00000212015 Missing in GENCODE NA Excluded E2 3 0.00861408878563708 -0.00195302114606494 0.0018164645503897 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_87715984_87716008 ENSMUST00000039476.14 0 chr3:87713343+87717029 0 24 GTCCAAATATGAGGAAGATCGGAG 1 88.659736258 2.71232141501 1.29958266371e-11 chr3_+_87715984_87716008|88.659736258|2.71232141501 2.0371482278847e-12 IN ENSMUST00000039476 Annotated NA Included I1 1 -1.33853211371913e-52 5.15655525449385e-52 4.02750238947195e-52 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_87718228_87718258 ENSMUST00000152006.1 184 chr3:87717520+87722356,chr3:87717520+87725478 183,1 30 CATTTCATATTCCCTTGTCCCCTGTGGAAG 1 84.950289995 3.4582941313 0 chr3_+_87718228_87718258|84.950289995|3.4582941313 0 IN ENSMUST00000152006 Annotated NA Muscular M2 20 -0.0375089054701676 0.00674218978420361 0.0401212952114781 TRUE TRUE TRUE 11.5 -1 10.5 -1 FALSE FALSE FALSE chr3_+_87919802_87919828 ENSMUST00000019854.12 54 chr3:87919705+87921816 54 26 GACGTTGGAGCTATCCGCATATCGGG 1 82.7848782535 0.0471666753292 0 chr3_+_87919802_87919828|82.7848782535|0.0471666753292 0 IN ENSMUST00000019854 Annotated Alt5 Excluded E3 2 -0.00706314940649227 0.00325016572302521 0.0138138858231226 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_88161780_88161801 ENSMUST00000001455.12 734 chr3:88161381+88162957 734 21 ACTGAGGACCATTTAGATCTG 1 85.7573173408 3.17528004467 1.37756472895e-12 chr3_+_88161780_88161801|85.7573173408|3.17528004467 2.61901611509074e-13 IN ENSMUST00000001455 Annotated NA Neuronal N1 18 0.0672874163651343 -0.0117384272549451 0.0177471430497238 TRUE TRUE TRUE 12.5 1 12.5 1 TRUE TRUE FALSE chr3_+_88726171_88726179 ENSMUST00000029692.14 446 chr3:88726068+88726279 446 8 GACAGCAG 1 80.5432315337 2.91075001781 1.18612543185e-05 chr3_+_88726171_88726179|80.5432315337|2.91075001781 4.95863436433819e-06 IN ENSMUST00000029692 Missing in GENCODE Alt5 Excluded E1 6 0.00116689519342759 0.000437008432746665 0.00121126215040036 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_88726176_88726179 ENSMUST00000029692.14 67 chr3:88726068+88726279 67 3 CAG 1 75.4234727014 3.13000001226 0.0123743520495 chr3_+_88726176_88726179|75.4234727014|3.13000001226 0.0103653067605942 IN ENSMUST00000029692 Novel Alt5 Excluded E1 6 0.000248438469096771 9.77820769966758e-05 0.000182657232101082 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_88875906_88875930 ENSMUST00000212694.1 7 chr3:88869843+88880070 7 24 GTGCAATCTGTAGTCCCCAGTAAG 1 87.8636538797 None 0 chr3_+_88875906_88875930|87.8636538797|None 0 IN ENSMUST00000212694 Annotated NA Other O2 21 -0.00724166725100298 -0.00486944776159091 0.0111754865919158 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_89218856_89218883 ENSMUST00000029682.10 0 chr3:89218130+89219046 0 27 TGACCAGCGCACTGCAATCCATTCTAG 1 82.4480701865 1.98754837724 0 chr3_+_89218856_89218883|82.4480701865|1.98754837724 0 IN ENSMUST00000029682 Annotated NA Included I1 1 -2.33701053558414e-27 2.85158586982124e-27 5.09757697597811e-27 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_89225251_89225276 ENSMUST00000126315.7 0 chr3:89225006+89226303 0 25 GCAGTGACATCCATATCTGGCCCAG 1 81.7135144073 3.15596553131 1.12621023618e-12 chr3_+_89225251_89225276|81.7135144073|3.15596553131 3.83804099612917e-13 IN ENSMUST00000126315 Annotated Alt3 Excluded E3 2 0.00514207763784896 0.00464887602955255 -0.00257237459469737 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_89445791_89445815 ENSMUST00000038942.9 0 chr3:89445679+89446090 0 24 GTACACTGCTGGAGCCCGAGACTG 1 85.7813824585 1.14146427378 1.36068933898e-12 chr3_+_89445791_89445815|85.7813824585|1.14146427378 2.58126853225349e-13 IN ENSMUST00000038942 Annotated NA Included I1 1 -2.59053031146351e-70 -5.3175534136427e-71 3.38353990335513e-70 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_90259582_90259612 ENSMUST00000029545.14 0 chr3:90259492+90259762 0 30 GTTTTCTGGATGGTGAGATGGATGCTAAAG 1 85.4374273623 1.82261761377 0 chr3_+_90259582_90259612|85.4374273623|1.82261761377 0 IN ENSMUST00000029545 Annotated NA Included I1 1 -4.61019767984886e-70 -2.53664456475423e-69 -7.04791559452958e-70 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_90486439_90486448 ENSMUST00000196769.4 2 chr3:90486272+90486850 2 9 GGTTCCTTT 1 68.506253288 -0.683307676075 8.41912069627e-06 chr3_+_90486439_90486448|68.506253288|-0.683307676075 8.39045926726012e-06 IN ENSMUST00000196769 Novel NA Excluded E1 6 1.0579142975269e-05 1.36201206627171e-05 -5.62935701426851e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_94375034_94375064 ENSMUST00000029795.9 0 chr3:94372931+94387120 0 30 AGCTGCTGGCTGCAAAGAAGACCCACACCT 1 82.7427211392 1.38647058647 0 chr3_+_94375034_94375064|82.7427211392|1.38647058647 0 IN ENSMUST00000029795 Annotated NA Included I1 1 -1.14559008783266e-13 -4.34480705716258e-14 -6.15770902964407e-14 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_94481008_94481024 ENSMUST00000198316.4 1 chr3:94480350+94484816 1 16 TCTTCTACAAGCCTGG 1 74.2285032294 0.204700000188 4.04361344408e-09 chr3_+_94481008_94481024|74.2285032294|0.204700000188 3.64945007547135e-09 IN ENSMUST00000198316 Novel NA Excluded E1 6 0.000119606843927751 -0.000200568680609583 7.91189857307798e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_94878521_94878546 ENSMUST00000107270.8 0 chr3:94878268+94878660 0 25 GGCTCAGTTGGATGTCTCACTTGAG 1 83.4070841146 2.53931038647 3.22408766351e-13 chr3_+_94878521_94878546|83.4070841146|2.53931038647 8.31557045444242e-14 IN ENSMUST00000107270 Annotated NA Included I1 1 2.23445825532827e-44 -3.93310640494342e-44 -6.66651547763617e-44 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_95895329_95895354 ENSMUST00000015894.11 23 chr3:95895216+95895447 23 25 GAGAGGCGGTCTGGAGGGAGAGTAG 1 76.6373282844 1.00351723194 0 chr3_+_95895329_95895354|76.6373282844|1.00351723194 0 IN ENSMUST00000015894 Novel NA Excluded E1 6 0.000924047809315274 0.000233302764912024 0.000298273993681837 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_96140416_96140430 ENSMUST00000146660.1 0 chr3:96136624+96141487 0 14 GAAAGAACTGGGAT 1 83.6486675124 4.87455566559 1.80488686469e-05 chr3_+_96140416_96140430|83.6486675124|4.87455566559 4.49092305765397e-06 IN ENSMUST00000146660 Annotated Alt3 Excluded E2 3 0.000413829515180974 0.000226022692445443 -0.000208156295987738 TRUE FALSE FALSE FALSE FALSE FALSE chr3_+_98309029_98309059 ENSMUST00000120541.7 0 chr3:98303276+98309819 0 30 ATCCATGCAACAATTCCCCGGGGAAAGAAG 1 86.4959472719 -0.190882350941 0 chr3_+_98309029_98309059|86.4959472719|-0.190882350941 0 IN ENSMUST00000120541 Annotated NA Included I1 1 7.13467910788808e-11 8.20031649628407e-10 -8.82980358624162e-10 TRUE FALSE TRUE FALSE FALSE FALSE chr3_-_103808071_103808098 ENSMUST00000063502.12 1 chr3:103807576-103808899 1 27 GATACTTTGGAACAATTCTATACACAG 1 86.5976284362 4.28170969409 0 chr3_-_103808071_103808098|86.5976284362|4.28170969409 0 IN ENSMUST00000063502 Annotated Alt5 Excluded E3 2 -0.00116911512164004 -0.00144682325326374 -0.00666334783737821 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_106164802_106164832 ENSMUST00000063062.8 0 chr3:106164291-106167496 0 30 GTCTGGCAATTCTTCTGAACGTACAGCTGG 1 87.1275098718 1.47338237 0 chr3_-_106164802_106164832|87.1275098718|1.47338237 0 IN ENSMUST00000063062 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_-_107213153_107213173 ENSMUST00000029504.8 1 chr3:107212872-107213378 1 20 CCTATGCCTTTTGTGGCTTG 1 69.3358265762 -0.528374996308 1.71240799318e-12 chr3_-_107213153_107213173|69.3358265762|-0.528374996308 1.70219394135529e-12 IN ENSMUST00000029504 Novel NA Excluded E1 6 1.19055798158277e-05 7.67174089128317e-07 4.50856953598752e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_107213566_107213570 ENSMUST00000029504.8 3 chr3:107213523-107214210 3 4 GCTG 1 60.8082468292 -0.160500001395 0.0103073086509 chr3_-_107213566_107213570|60.8082468292|-0.160500001395 0.0103072472689554 IN ENSMUST00000029504 Novel NA Excluded E1 6 4.74139892112222e-05 2.20718543218747e-05 0.000203732036526752 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_107490773_107490777 ENSMUST00000167975.1 1 chr3:107490010-107491419 1 4 GAAG 1 73.513109775 -0.196750002448 0.0211508426099 chr3_-_107490773_107490777|73.513109775|-0.196750002448 0.0196860695771139 IN ENSMUST00000167975 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_-_108442736_108442762 ENSMUST00000090553.11 21 chr3:108437579-108444996 21 26 TGTGTACCACCACAGCAGGCTTAAAG 1 78.3412214784 None 0 chr3_-_108442736_108442762|78.3412214784|None 0 IN ENSMUST00000090553 Novel NA Excluded E1 6 1.09673238446695e-05 -0.000187385865101904 -0.000157065969272479 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_108997034_108997064 ENSMUST00000046924.9 0 chr3:108992742-109003299 0 30 GAATTAAAAGGTGGGAAAGCGTATGCAAAG 1 91.8555286397 3.85676467758 0 chr3_-_108997034_108997064|91.8555286397|3.85676467758 0 IN ENSMUST00000046924 Annotated NA Included I1 1 -1.13613370762483e-27 2.20891651325129e-25 -1.43837164019421e-26 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_109851764_109851791 ENSMUST00000156177.8 0 chr3:109841575-109872195,chr3:109832635-109872199,chr3:109841575-109853064,chr3:109832635-109871606,chr3:109841575-109872199,chr3:109841575-109864290,chr3:109782911-109872199,chr3:109827761-109872199,chr3:109832635-109934568 0 27 GTATCCCCAGCATTTCCAGTATCGGTA 1 87.2972777104 3.48100003312 0 chr3_-_109851764_109851791|87.2972777104|3.48100003312 0 IN ENSMUST00000156177 Annotated NA Included I1 1 5.28346822313156e-06 -3.17636249173485e-05 -1.08448923524179e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_113607287_113607299 ENSMUST00000106536.7 1 chr3:113605647-113608339 1 12 AAGCATTCCTGC 1 75.8656562908 3.46456251293 6.23054608351e-07 chr3_-_113607287_113607299|75.8656562908|3.46456251293 5.03361104131628e-07 IN ENSMUST00000106536 Novel Alt3 Excluded E1 6 0.000888966212659429 0.000773490650278721 0.000990581445312423 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_122552135_122552150 ENSMUST00000162409.7 186 chr3:122549265-122557902 186 15 TGGTCGATGAAGATG 1 77.2775570888 3.88694740283 3.13521009154e-08 chr3_-_122552135_122552150|77.2775570888|3.88694740283 2.18112439220874e-08 IN ENSMUST00000162409 Annotated NA Neuronal N6 15 0.0125860917987073 0.000399363462269205 0.037880587130636 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_122982684_122982709 ENSMUST00000090379.6 18 chr3:122969249-122984281 18 25 TGGTCGTTGAAGTTAGCTGGCAAAG 1 86.5768088294 0.152103449539 0 chr3_-_122982684_122982709|86.5768088294|0.152103449539 0 IN ENSMUST00000090379 Annotated Alt5 Excluded E2 3 -0.000356726723862114 -0.000580794303189142 0.00500874168731822 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_126950734_126950756 ENSMUST00000182078.8 0 chr3:126940572-126952488,chr3:126940146-126952488,chr3:126947807-126952488 0 22 ATCGGTATGACATCCGAAAAAA 1 86.327767662 3.1046153605 2.64606114797e-10 chr3_-_126950734_126950756|86.327767662|3.1046153605 4.76073624966489e-11 IN ENSMUST00000182078 Annotated Alt3 Included I2 10 0.00376238711730168 0.00363275587579423 0.0116186005997596 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_126966122_126966146 ENSMUST00000182078.8 291 chr3:126965162-126971002,chr3:126965162-126976050 281,10 24 GAGGTGCCTGCTCAAGAGACCTTG 1 84.7008345072 -0.013249996983 0 chr3_-_126966122_126966146|84.7008345072|-0.013249996983 0 IN ENSMUST00000182078 Novel NA Excluded E2 3 0.00260863492264535 -0.00803399219125175 0.0097473029046703 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_126979255_126979267 ENSMUST00000182078.8 363 chr3:126976947-126981799 363 12 TACCATCCCCAG 1 79.7404509734 2.80212499946 1.12596835888e-06 chr3_-_126979255_126979267|79.7404509734|2.80212499946 5.40801023629633e-07 IN ENSMUST00000182078 Annotated NA Excluded E2 3 0.000589520011071997 0.000837528491087844 0.0147071384471902 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_127052225_127052249 ENSMUST00000182008.7 2843 chr3:127048280-127052687 2843 24 ATGATGGTGAACAGGACAACAGAG 1 69.4502135702 4.94599997465 0 chr3_-_127052225_127052249|69.4502135702|4.94599997465 0 IN ENSMUST00000182008 Annotated NA Neuronal N5 14 0.0602354682625046 0.0616702812610352 -0.0229827080020703 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr3_-_127820759_127820785 ENSMUST00000200409.4 0 chr3:127817006-127822583 0 26 GGGGAGAGCCCAGGAAGCAGCCATAG 1 86.5866834687 2.81093331029 1.23168142352e-12 chr3_-_127820759_127820785|86.5866834687|2.81093331029 2.16715534406831e-13 IN ENSMUST00000200409 Annotated Alt3 Included I1 1 -2.40733315723014e-148 2.39587284199816e-148 5.46732733783785e-148 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_133154139_133154157 ENSMUST00000147041.9 0 chr3:133149650-133160718 0 18 GAATATATATTTGCAAGA 1 86.0307688929 2.01804544336 1.60740442734e-07 chr3_-_133154139_133154157|86.0307688929|2.01804544336 2.97350195577195e-08 IN ENSMUST00000147041 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_-_135639139_135639156 ENSMUST00000029812.13 102 chr3:135626743-135655499 102 17 AGGCCCCCTTGCAACAG 1 78.2852882064 1.8557142963 6.53358256386e-09 chr3_-_135639139_135639156|78.2852882064|1.8557142963 3.96172961103503e-09 IN ENSMUST00000029812 Annotated NA Neuronal N6 15 0.0184369340121184 0.00478437757243291 0.0213641797616489 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_136057395_136057425 ENSMUST00000196159.4 0 chr3:136055802-136064112 0 30 ATAAACTGACCATTGTGCACCATCCAAGTG 1 86.4585893705 1.73011764632 0 chr3_-_136057395_136057425|86.4585893705|1.73011764632 0 IN ENSMUST00000196159 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_-_138131382_138131401 ENSMUST00000098580.5 1 chr3:138125245-138133999 1 19 ATAAACACTGTTGTCGCCG 1 72.7817649799 1.66313045695 1.24074972518e-10 chr3_-_138131382_138131401|72.7817649799|1.66313045695 1.18171694651892e-10 IN ENSMUST00000098580 Novel NA Neuronal N6 15 0.0179185638624011 -0.00588035051934253 0.0378724743446188 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr3_-_142304704_142304722 ENSMUST00000029941.15 747 chr3:142304469-142312122 747 18 GAAAATTCCACCTAAACG 1 74.1755392546 2.60786363008 4.33772129327e-10 chr3_-_142304704_142304722|74.1755392546|2.60786363008 3.92508470170583e-10 IN ENSMUST00000029941 Annotated NA Muscular M1 22 0.0126115081360263 -0.0952032363050029 0.0202523192403335 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_142306283_142306298 ENSMUST00000029941.15 12 chr3:142304469-142312122 12 15 TAACCCTGGCACTGT 1 81.7968273612 2.28631577405 2.77723298803e-08 chr3_-_142306283_142306298|81.7968273612|2.28631577405 9.32881616400039e-09 IN ENSMUST00000029941 Annotated NA Excluded E3 2 0.00215926310928736 -0.0430241384344947 -0.00768073535827762 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_142309527_142309544 ENSMUST00000090134.11 0 chr3:142304469-142312122,chr3:142304722-142312122,chr3:142306298-142312122,chr3:142306298-142314405,chr3:142304471-142311952 0 17 AAAACACACGTGACAAA 1 87.530989018 2.2069047654 3.27883700191e-07 chr3_-_142309527_142309544|87.530989018|2.2069047654 5.39509238395297e-08 IN ENSMUST00000090134 Annotated NA Excluded E2 3 -0.00512432775396791 -0.0119534033552228 0.0194206676146791 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_142312523_142312541 ENSMUST00000195975.4 1 chr3:142312214-142314405 1 18 GGTGAACCTAAGGAAGTA 1 70.3362725577 3.05440910838 1.23293375509e-10 chr3_-_142312523_142312541|70.3362725577|3.05440910838 1.21880172621047e-10 IN ENSMUST00000195975 Novel Alt3 Excluded E1 6 -0.000855931154753868 0.00304667651359405 0.000919346370407514 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_144699853_144699877 ENSMUST00000199531.4 137 chr3:144697467-144701759,chr3:144697467-144705512 105,32 24 ATTTGGGCAGAGGAAGTGACAAAA 1 77.2040497208 4.19507140986 0 chr3_-_144699853_144699877|77.2040497208|4.19507140986 0 IN ENSMUST00000199531 Annotated NA Neuronal N4 13 0.0419627057741007 0.021453380880391 0.00133679999771433 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr3_-_14607176_14607185 ENSMUST00000185423.1 3 chr3:14606408-14609540 3 9 AAAGAGCTG 1 81.9865171121 1.29576923068 4.64756420838e-05 chr3_-_14607176_14607185|81.9865171121|1.29576923068 1.51118865463484e-05 IN ENSMUST00000185423 Novel Alt5 Excluded E2 3 0.00110621529359202 0.000478030680437655 0.00688601546336749 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_148820450_148820468 ENSMUST00000200543.4 117 chr3:148817928-148820972,chr3:148817928-148821279,chr3:148817928-148822954,chr3:148817928-148822987,chr3:148818686-148820972 41,65,6,1,4 18 CAACCTACAGAGAGACAA 1 74.345928574 5.86159085144 1.28693500301e-10 chr3_-_148820450_148820468|74.345928574|5.86159085144 1.15458087535103e-10 IN ENSMUST00000200543 Annotated Alt3 Excluded E2 3 0.00988391620030989 0.00368743428009536 0.00852643414901916 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_148827211_148827238 ENSMUST00000196526.4 9 chr3:148826533-148827540,chr3:148826533-148828476 1,8 27 CTATGAAGATAATAAGCCATTTATCAA 1 77.8984854616 5.97648394492 0 chr3_-_148827211_148827238|77.8984854616|5.97648394492 0 IN ENSMUST00000196526 Annotated NA Neuronal N4 13 0.0347325886876223 0.0162223110588101 -0.00233184260933863 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr3_-_148860426_148860433 ENSMUST00000196526.4 54 chr3:148859533-148865599 54 7 CAAAAAG 1 68.9266505227 6.22090920535 0.00144258314371 chr3_-_148860426_148860433|68.9266505227|6.22090920535 0.00143602392423237 IN ENSMUST00000196526 Novel NA Excluded E1 6 0.00424589144451056 0.000892044031655533 0.00739330745175181 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_148860426_148860438 ENSMUST00000196526.4 789 chr3:148859533-148865599 789 12 TGGAGCAAAAAG 1 72.0504201849 6.0897501111 1.40862440212e-06 chr3_-_148860426_148860438|72.0504201849|6.0897501111 1.36368883740801e-06 IN ENSMUST00000196526 Annotated NA Neuronal N3 17 0.0647039346370672 0.024556108859653 0.0444115708376416 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr3_-_148860426_148860441 ENSMUST00000196526.4 101 chr3:148859533-148865599 101 15 AAGTGGAGCAAAAAG 1 74.4050383034 6.05563168777 2.19988576244e-08 chr3_-_148860426_148860441|74.4050383034|6.05563168777 1.96751865910727e-08 IN ENSMUST00000196526 Novel NA Neuronal N6 15 0.0233850173079071 0.00818012860681403 0.0196569889999434 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_156560422_156560425 ENSMUST00000140941.1 1 chr3:156560248-156561475 1 3 CTG 1 62.4391505559 0.925428593797 0.0717601895482 chr3_-_156560422_156560425|62.4391505559|0.925428593797 0.0717582568546871 IN ENSMUST00000140941 Novel NA Excluded E4 11 0.00608189757531596 0.0171158052615721 -0.0330829801875257 TRUE TRUE FALSE FALSE FALSE FALSE chr3_-_27490132_27490143 ENSMUST00000195008.5 59 chr3:27488290-27491024 59 11 GGATAACACAG 1 82.0906151462 2.22886664867 2.53226287539e-06 chr3_-_27490132_27490143|82.0906151462|2.22886664867 8.08921299944032e-07 IN ENSMUST00000195008 Missing in GENCODE NA Excluded E2 3 0.0104545919884784 0.0031359869628409 0.0151921357181767 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_29972679_29972706 ENSMUST00000173899.7 56 chr3:29966819-29977258 56 27 TTCCCACTACCTGACCAGAGAACATGG 1 81.8656045698 4.75145153461 0 chr3_-_29972679_29972706|81.8656045698|4.75145153461 0 IN ENSMUST00000173899 Annotated NA Excluded E4 11 0.0159625867179742 0.00823028012598078 0.0313481391601185 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_33081975_33082003 ENSMUST00000108224.7 0 chr3:33080536-33082815,chr3:33080536-33142848,chr3:33015076-33142848 0 28 AAATCGGGTCATGCAGATGAGCTACTTG 1 79.8170657454 2.21896877605 0 chr3_-_33081975_33082003|79.8170657454|2.21896877605 0 IN ENSMUST00000108224 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr3_-_33830490_33830516 ENSMUST00000029222.7 7 chr3:33830157-33830656 7 26 GTATGAAACCTAAGGTCTTGAATGTG 1 77.9112258181 -0.442266661922 0 chr3_-_33830490_33830516|77.9112258181|-0.442266661922 0 IN ENSMUST00000029222 Novel NA Excluded E2 3 0.00155491008499597 0.00130983013100261 -0.00506343427932109 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_45307096_45307120 ENSMUST00000195225.5 36 chr3:45282164-45327065,chr3:45287452-45327065 35,1 24 CTGAAGAATTGGACAGTCTTCCAG 1 66.8619877242 -0.186392858891 0 chr3_-_45307096_45307120|66.8619877242|-0.186392858891 0 IN ENSMUST00000195225 Novel NA Excluded E1 6 0.00155805428781266 -0.00264118889500367 0.000549450809444123 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_45307633_45307658 ENSMUST00000181047.6 2 chr3:45282164-45327065 2 25 AAATGAGACAGTCATCATCTTCAAG 1 82.6812981201 0.188482761383 0 chr3_-_45307633_45307658|82.6812981201|0.188482761383 0 IN ENSMUST00000181047 Novel NA Excluded E3 2 0.00871369979705458 -0.0080325621090555 -0.00714521946724657 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_55994047_55994056 ENSMUST00000029374.7 0 chr3:55992514-56000486 0 9 GGTTCTAAG 1 81.5779280127 3.6221538507 0.0299045111119 chr3_-_55994047_55994056|81.5779280127|3.6221538507 0.0104322932760094 IN ENSMUST00000029374 Annotated NA Included I1 1 -1.02443402405663e-06 4.13183170019397e-06 2.19490646389052e-06 TRUE FALSE TRUE FALSE FALSE FALSE chr3_-_59343689_59343717 ENSMUST00000194546.5 1 chr3:59341333-59344328 1 28 GATTCAAAAGCAAGACAGAAGAGCTCAG 1 73.2074448014 1.15025001264 0 chr3_-_59343689_59343717|73.2074448014|1.15025001264 0 IN ENSMUST00000194546 Novel NA Other O1 4 -0.00644278617606819 0.0202300612016152 -0.0175010029858112 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_63699779_63699802 ENSMUST00000048134.15 33 chr3:63699477-63701783,chr3:63699480-63701783 1,32 23 ATCTGAATAGGAAGCAGCGCAAG 1 79.9527211934 3.76499996879 0 chr3_-_63699779_63699802|79.9527211934|3.76499996879 0 IN ENSMUST00000048134 Annotated NA Excluded E3 2 0.023542853648348 -0.0188365411183079 0.010122121933294 TRUE TRUE FALSE 14.5 1 FALSE FALSE FALSE chr3_-_63699779_63699807 ENSMUST00000176861.1 87 chr3:63699477-63701783,chr3:63699480-63701783 4,83 28 TACAGATCTGAATAGGAAGCAGCGCAAG 1 77.0798571409 3.87024997611 0 chr3_-_63699779_63699807|77.0798571409|3.87024997611 0 IN ENSMUST00000176861 Annotated NA Neuro-Muscular NM4 16 0.0435555026160069 -0.0552611766366244 0.0310401144460818 TRUE TRUE FALSE 14.5 1 FALSE FALSE FALSE chr3_-_65950212_65950226 ENSMUST00000129002.7 239 chr3:65948790-65950479 239 14 GGTAGTCCATGATG 1 84.0092644833 5.78099997838 2.43162500135e-08 chr3_-_65950212_65950226|84.0092644833|5.78099997838 5.74111413964573e-09 IN ENSMUST00000129002 Annotated Alt3 Excluded E3 2 -0.00100371315940809 -0.00245043653154692 0.00116939388933703 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_69101201_69101231 ENSMUST00000029353.8 0 chr3:69101104-69101340 0 30 CAAAATACCTCTCTAGAAGCTATTGTTCAA 1 81.1689936462 4.3790882633 0 chr3_-_69101201_69101231|81.1689936462|4.3790882633 0 IN ENSMUST00000029353 Annotated NA Included I1 1 -5.72827573791834e-118 -1.07071385122882e-118 -1.12389959568756e-117 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_79082623_79082647 ENSMUST00000195708.1 0 chr3:79081285-79083198 0 24 GAAGAAGAAGTGGCGGAGTCTGGG 1 83.75293818 5.13996415958 6.69686528454e-12 chr3_-_79082623_79082647|83.75293818|5.13996415958 1.64079860809352e-12 IN ENSMUST00000195708 Annotated NA Included I1 1 -3.12306279856486e-11 7.4346366959405e-11 7.0205535397414e-11 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_79130697_79130716 ENSMUST00000152275.7 0 chr3:79112302-79145770,chr3:79112302-79169738,chr3:79112302-79172907,chr3:79112302-79144855 0 19 CGAAAGAGACTATATCATG 1 81.3172858704 1.8178695829 1.183434436e-07 chr3_-_79130697_79130716|81.3172858704|1.8178695829 4.32008382400539e-08 IN ENSMUST00000152275 Annotated NA Excluded E1 6 -0.000233620948997912 -0.000914093422076466 0.00182115692629485 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_79169738_79169756 ENSMUST00000195708.1 0 chr3:79112302-79172907,chr3:79130716-79172907 0 18 GAATGCACTAAATCTCAG 1 74.0512430945 4.37890906767 6.13639524971e-07 chr3_-_79169738_79169756|74.0512430945|4.37890906767 5.58547028628453e-07 IN ENSMUST00000195708 Annotated NA Included I1 1 -8.4075846954681e-10 1.12014703446907e-09 1.60717735712092e-09 TRUE FALSE TRUE FALSE FALSE FALSE chr3_-_79675500_79675523 ENSMUST00000078527.12 1 chr3:79670918-79678675 1 23 GAAAAGTTTTTAACGAAGAAAAA 1 70.0257393179 0.553629627244 0 chr3_-_79675500_79675523|70.0257393179|0.553629627244 0 IN ENSMUST00000078527 Novel NA Excluded E1 6 -0.000347902911800843 0.000206152395273058 0.00175610369653563 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_81918750_81918761 ENSMUST00000193125.1 67 chr3:81918203-81924336 67 11 CGACTTTGGAG 1 80.2471995126 -0.101333338022 5.69781528159e-06 chr3_-_81918750_81918761|80.2471995126|-0.101333338022 2.50818116276363e-06 IN ENSMUST00000193125 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_-_83905085_83905115 ENSMUST00000195245.5 0 chr3:83898501-83906346 0 30 AGATGTGAGTGTCCTGCCTGAGTTCACAGA 1 65.9421961398 0.518411763232 0 chr3_-_83905085_83905115|65.9421961398|0.518411763232 0 IN ENSMUST00000195245 Annotated Alt3 Excluded E2 3 0.000620072197696602 -0.000374220866726868 0.00121771394501862 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_86788621_86788634 ENSMUST00000029719.13 958 chr3:86787412-86789311,chr3:86787412-86789408,chr3:86787412-86791994 50,1,907 13 GTCCAAGGCCATG 1 78.4172492963 3.63599996926 1.09546811844e-07 chr3_-_86788621_86788634|78.4172492963|3.63599996926 6.51319269628914e-08 IN ENSMUST00000029719 Annotated NA Neuronal N2 8 0.0634299475596221 -0.0326545223457511 -0.102014693540331 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr3_-_86793275_86793299 ENSMUST00000191752.5 1 chr3:86792111-86793816 1 24 GAGTTAATCAGTCAAATGCTTCAG 1 83.6366176902 3.68542861007 0 chr3_-_86793275_86793299|83.6366176902|3.68542861007 0 IN ENSMUST00000191752 Novel Alt3 Excluded E2 3 0.00110323531467126 0.00248355676796291 -0.00226220214277201 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_87262178_87262199 ENSMUST00000090986.10 0 chr3:87259632-87263444 0 21 CTCCTGTCGGAGTCCAGTCCG 1 84.847262289 -0.239559991956 8.61064108904e-10 chr3_-_87262178_87262199|84.847262289|-0.239559991956 1.81738402105225e-10 IN ENSMUST00000090986 Annotated NA Included I1 1 -7.65022537998762e-25 3.23975652981938e-24 2.11402646324481e-24 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_87756259_87756280 ENSMUST00000174219.1 0 chr3:87754469-87756551 0 21 CTGCCACCCGATGCACGGCGA 1 68.1257344047 3.39843995661 4.67707650387e-10 chr3_-_87756259_87756280|68.1257344047|3.39843995661 4.66488736527992e-10 IN ENSMUST00000174219 Annotated Alt3 Excluded E2 3 -0.000947234430080586 -0.00109889160195827 -0.00289354478519222 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_87783286_87783304 ENSMUST00000029712.4 0 chr3:87783129-87783669,chr3:87760388-87824219,chr3:87760395-87824223 0 18 TCTCCTTCTCGCCAGTGG 1 77.5550482661 1.22977272286 7.53789208829e-09 chr3_-_87783286_87783304|77.5550482661|1.22977272286 5.06137798339523e-09 IN ENSMUST00000029712 Annotated NA Included I1 1 1.146342495072e-05 -5.7487764807158e-05 -2.96163098013003e-05 TRUE TRUE FALSE FALSE FALSE FALSE chr3_-_89210583_89210604 ENSMUST00000118964.8 5 chr3:89210448-89212682 5 21 GAGAAACTACTGCCTGTGCTA 1 77.0575183588 3.62819996953 1.96198612912e-12 chr3_-_89210583_89210604|77.0575183588|3.62819996953 1.40187861319419e-12 IN ENSMUST00000118964 Novel Alt5 Excluded E2 3 0.000668487801832864 0.000224547014585631 0.00158046173683501 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_89393034_89393063 ENSMUST00000142119.1 0 chr3:89381515-89393310 0 29 CTCCAGCGAACGGACCCAACGGCTGAAAG 1 87.2863672697 1.02490906525 0 chr3_-_89393034_89393063|87.2863672697|1.02490906525 0 IN ENSMUST00000142119 Annotated Alt5 Excluded E3 2 0.00229599899370021 0.0108004906234536 -0.00425936182752119 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_8943550_8943577 ENSMUST00000120143.7 901 chr3:8935040-8944610,chr3:8936480-8944610 35,866 27 ATTGCAAGCTTTCTCACATTCATTTAG 1 86.0478250882 3.22664516684 0 chr3_-_8943550_8943577|86.0478250882|3.22664516684 0 IN ENSMUST00000120143 Annotated NA Muscular M2 20 0.0154152191820443 -0.0629994025477309 0.0770519403984872 TRUE FALSE TRUE FALSE FALSE FALSE chr3_-_89997544_89997574 ENSMUST00000197786.4 1 chr3:89996298-89997801 1 30 AACTTCCAGGTCCTGAGTCAGAAACACCTG 1 80.3958715307 1.35044117469 0 chr3_-_89997544_89997574|80.3958715307|1.35044117469 0 IN ENSMUST00000197786 Novel Alt3 Excluded E2 3 0.0018462815799932 -0.00139980058294222 0.00257423343380382 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_90500499_90500514 ENSMUST00000001043.13 70 chr3:90500107-90502115,chr3:90500107-90503095 57,13 15 ATACTAGGATTACAG 1 87.7125995185 -0.135421046693 7.23593984731e-09 chr3_-_90500499_90500514|87.7125995185|-0.135421046693 1.17860132764491e-09 IN ENSMUST00000001043 Novel NA Excluded E1 6 -0.000144107591184837 4.10325037704684e-05 0.000809967069025735 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_95326385_95326414 ENSMUST00000124638.7 0 chr3:95326272-95327207 0 29 GACCCTGAGAACCGAAACAAGATGCCAGT 1 86.6322932541 1.47048483946 0 chr3_-_95326385_95326414|86.6322932541|1.47048483946 0 IN ENSMUST00000124638 Annotated NA Included I1 1 9.94148038845118e-116 6.64373994102421e-117 1.52452542269853e-115 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_95898976_95898997 ENSMUST00000036181.14 0 chr3:95898885-95899223 0 21 CAGGACCACTGTATACCACAG 1 87.4717411817 0.809800000489 7.11679604137e-11 chr3_-_95898976_95898997|87.4717411817|0.809800000489 1.17512666264474e-11 IN ENSMUST00000036181 Annotated NA Included I1 1 1.83102459863599e-36 -1.15803863756061e-36 -3.78064206106232e-36 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_95901458_95901480 ENSMUST00000147962.2 0 chr3:95901272-95902110,chr3:95901272-95904319 0 22 CTTCATTGTTCTGAAACTACAG 1 86.1820649411 0.594692301865 4.6156856115e-11 chr3_-_95901458_95901480|86.1820649411|0.594692301865 8.41615666047346e-12 IN ENSMUST00000147962 Annotated NA Included I1 1 0.000116021595820895 -1.45029490403217e-05 -0.00019245765001664 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_95902110_95902131 ENSMUST00000036181.14 0 chr3:95901480-95904319,chr3:95901272-95904319 0 21 GTCACCACTGGACATATGAAG 1 88.8701075089 1.9843200177 6.39829522697e-10 chr3_-_95902110_95902131|88.8701075089|1.9843200177 9.97805171820687e-11 IN ENSMUST00000036181 Annotated Alt3 Included I2 10 -0.000119686228593125 0.0155973666748057 0.00452141656687019 TRUE FALSE FALSE FALSE FALSE FALSE chr3_-_96293518_96293539 ENSMUST00000029748.7 0 chr3:96292510-96293904 0 21 TTCCAGTCGGTGGGGAAGTGG 1 82.0885780702 0.698359997608 3.11274561682e-10 chr3_-_96293518_96293539|82.0885780702|0.698359997608 9.94697657574761e-11 IN ENSMUST00000029748 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr3_-_96707783_96707809 ENSMUST00000171249.5 0 chr3:96707650-96707809,chr3:96707650-96707991 0 26 GTGGGCACATGGAACCTGATGAGGAG 0 79.6370780003 2.03816669136 2.86437540353e-14 chr3_-_96707783_96707809|79.6370780003|2.03816669136 -Inf IN ENSMUST00000171249 Annotated Alt3 Included I2 10 -0.0100836776257966 -0.00635215366587042 -0.00929209826471785 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_102860769_102860794 ENSMUST00000097948.8 0 chr4:102852946+102863664,chr4:102852946+102861855,chr4:102760565+102863661,chr4:102852946+102867639,chr4:102852946+102863661 0 25 AGGCTCGCCAGACCGAGATGGAATG 1 90.5237643382 3.81175860711 7.88702436694e-12 chr4_+_102860769_102860794|90.5237643382|3.81175860711 1.23290266884624e-12 IN ENSMUST00000097948 Annotated NA Included I1 1 -1.66002312083069e-07 1.40530292700461e-06 5.01818812417903e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_102900525_102900537 ENSMUST00000183855.7 1 chr4:102870724+102909737 1 12 AGGAAAAGTCCG 1 80.2439885284 3.55343750119 9.07965539132e-06 chr4_+_102900525_102900537|80.2439885284|3.55343750119 3.99909897408346e-06 IN ENSMUST00000183855 Annotated NA FALSE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr4_+_102905564_102905576 ENSMUST00000066824.13 0 chr4:102900537+102908807,chr4:102870724+102908807,chr4:102870724+102909737 0 12 AGGCGCAGCCCG 1 81.8967476632 4.17037494481 0.000491855634681 chr4_+_102905564_102905576|81.8967476632|4.17037494481 0.000162404756662959 IN ENSMUST00000066824 Annotated NA Neuro-Muscular NM5 7 0.0359509532054241 -0.116368853977723 -0.0632770445898767 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr4_+_102908807_102908832 ENSMUST00000183855.7 48 chr4:102870724+102909737 48 25 GGTGCAATTAAAAGGAACTTATCCA 1 81.0945885837 3.51386206726 0 chr4_+_102908807_102908832|81.0945885837|3.51386206726 0 IN ENSMUST00000183855 Annotated NA Neuro-Muscular NM5 7 0.0310047614298971 -0.0773263514841434 -0.0378005562403857 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_103127272_103127297 ENSMUST00000106858.7 0 chr4:103118315+103130965,chr4:103119509+103130965,chr4:103118315+103129340 0 25 CCATCTGTTGAGTCTTCAAGTCCAG 1 93.0652410173 3.34882753471 8.7059248699e-12 chr4_+_103127272_103127297|93.0652410173|3.34882753471 1.58106860936869e-12 IN ENSMUST00000106858 Annotated NA Included I1 1 -9.07433717000163e-116 -6.06424133418756e-117 -1.39154906203673e-115 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_106419922_106419951 ENSMUST00000165709.7 32 chr4:106418288+106420433 32 29 CTTTCCATGAGGCGTCAGCGGGCTTTCAA 1 80.4948941382 2.60606056723 0 chr4_+_106419922_106419951|80.4948941382|2.60606056723 0 IN ENSMUST00000165709 Novel NA Excluded E1 6 0.00173698904783045 0.000348949700245366 0.00258240854660472 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_107047241_107047270 ENSMUST00000030367.14 0 chr4:107046394+107047363 0 29 GATCAGGTGACATAGATGGACTTCCAAAA 1 85.596664554 4.34351517125 0 chr4_+_107047241_107047270|85.596664554|4.34351517125 0 IN ENSMUST00000030367 Annotated Alt5 Included I2 10 0.00175993432243819 0.000493202621568556 0.001705642874305 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_107846737_107846740 ENSMUST00000143601.7 1 chr4:107846619+107847443 1 3 GAG 1 71.8053150626 -0.288142857807 0.0486442861781 chr4_+_107846737_107846740|71.8053150626|-0.288142857807 0.0472940680842088 IN ENSMUST00000143601 Novel NA Excluded E3 2 0.00580796639415277 -0.0233915697028634 -0.00691641088127423 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_108514124_108514138 ENSMUST00000043368.11 34 chr4:108513566+108517382 34 14 TGCTGGGATTAAAG 1 77.8097172873 0.174111110469 5.5268172483e-08 chr4_+_108514124_108514138|77.8097172873|0.174111110469 3.5863232494826e-08 IN ENSMUST00000043368 Missing in GENCODE Alt5 Excluded E1 6 0.0014071392848544 0.000888157454821507 -0.00131293987792627 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_108533563_108533585 ENSMUST00000043368.11 38 chr4:108530949+108542010 38 22 GGAACAGACTGTCCATAATGGG 1 78.7440446171 0.0269999956855 2.45026221535e-12 chr4_+_108533563_108533585|78.7440446171|0.0269999956855 1.3855583347322e-12 IN ENSMUST00000043368 Missing in GENCODE NA Excluded E1 6 0.00124178612936866 0.000694799798527236 0.0017556577819703 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_108630277_108630306 ENSMUST00000176877.1 0 chr4:108630165+108630404 0 29 GAGTGACTCCGGATGACTTGGATGCTTTT 1 79.4930325615 3.334151529 0 chr4_+_108630277_108630306|79.4930325615|3.334151529 0 IN ENSMUST00000176877 Annotated Alt3 Excluded E3 2 0.0014906812770419 0.00414807814954688 -0.00270519364221641 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_115520251_115520266 ENSMUST00000094886.3 0 chr4:115519774+115521067 0 15 ATCCAAAGGCTAATG 1 84.2336535789 0.438789464925 1.18650425673e-06 chr4_+_115520251_115520266|84.2336535789|0.438789464925 2.71472188284605e-07 IN ENSMUST00000094886 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr4_+_115565670_115565685 ENSMUST00000030480.3 4 chr4:115565154+115566479 4 15 ATCCAAAGGCTAATG 1 84.2336535789 1.35415791093 4.75120032206e-09 chr4_+_115565670_115565685|84.2336535789|1.35415791093 1.08707465251712e-09 IN ENSMUST00000030480 Novel Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr4_+_117569091_117569108 ENSMUST00000037127.14 1 chr4:117564898+117582599 1 17 AGGAGACCAAAGCAAAT 1 80.2712646302 1.41676189076 4.01996658184e-09 chr4_+_117569091_117569108|80.2712646302|1.41676189076 1.76220593672838e-09 IN ENSMUST00000037127 Novel NA Excluded E1 6 2.0581419676918e-05 1.76181804768429e-05 -3.50337753607514e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_120453751_120453775 ENSMUST00000000087.12 0 chr4:120453306+120462012,chr4:120453306+120456284,chr4:120453306+120463074 0 24 AATCTGTTGACATCCTGGAGCTAG 1 85.2795021856 2.17257140065 1.04805053525e-11 chr4_+_120453751_120453775|85.2795021856|2.17257140065 2.10009787338095e-12 IN ENSMUST00000000087 Annotated NA Included I1 1 1.62304199383851e-94 -1.32134970650828e-94 -3.00972663171474e-94 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_121043994_121044018 ENSMUST00000030372.5 0 chr4:121043897+121044274 0 24 GGCCCTGGTTTTGCTGGACCTCCC 1 81.0333727249 2.1821785667 1.2398970739e-12 chr4_+_121043994_121044018|81.0333727249|2.1821785667 4.7573056605188e-13 IN ENSMUST00000030372 Annotated NA Included I1 1 -1.76293675573616e-06 3.34977875233411e-05 -1.62251045103855e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_124743873_124743903 ENSMUST00000094782.9 0 chr4:124743733+124746071 0 30 TGTCCCCAGATGGTGAACTCTACATCCTTG 1 83.8113228485 1.58267646647 0 chr4_+_124743873_124743903|83.8113228485|1.58267646647 0 IN ENSMUST00000094782 Annotated NA Included I1 1 1.80702276508501e-29 -1.18980228697636e-28 -6.20645440426277e-29 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_125042788_125042793 ENSMUST00000030684.7 2 chr4:125042680+125043564 2 5 GAGCT 1 70.1472042876 -0.115777785579 0.00333230199049 chr4_+_125042788_125042793|70.1472042876|-0.115777785579 0.00329841970098788 IN ENSMUST00000030684 Novel NA Excluded E1 6 0.000473417935260089 6.04611552485294e-05 -0.000354611127012206 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_125103429_125103437 ENSMUST00000154689.7 2 chr4:125103031+125107651,chr4:125103031+125108322 1,1 8 TTCTCTGA 1 75.2286729973 0.311500010546 0.000274620496197 chr4_+_125103429_125103437|75.2286729973|0.311500010546 0.000233368303930059 IN ENSMUST00000154689 Novel NA Excluded E1 6 0.00070167450423564 -0.000249085912377979 0.000315964498172911 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_125107516_125107546 ENSMUST00000184205.7 1677 chr4:125103031+125107651,chr4:125103031+125108322 514,1163 30 CCCGTCTGGCATGTTTGATTATGACTTTGA 1 74.2502550574 5.49726473584 0 chr4_+_125107516_125107546|74.2502550574|5.49726473584 0 IN ENSMUST00000184205 Annotated NA Neuronal N1 18 0.0816789683440153 0.0317141188191015 -0.0246596231204167 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE TRUE chr4_+_126063151_126063164 ENSMUST00000035497.4 1 chr4:126058792+126073804 1 13 CAGACCAAGGAGG 1 80.038589124 -0.340941184283 8.7282349448e-07 chr4_+_126063151_126063164|80.038589124|-0.340941184283 3.98346558405649e-07 IN ENSMUST00000035497 Novel NA Excluded E1 6 0.000732769849680957 -8.8191692457633e-05 -0.000997070270349807 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_126064949_126064979 ENSMUST00000035497.4 760 chr4:126058792+126073804 760 30 ATGAATGGACAGAGGTGGACAGAAAACGAG 1 78.5649890932 4.45902936424 0 chr4_+_126064949_126064979|78.5649890932|4.45902936424 0 IN ENSMUST00000035497 Annotated NA Neuronal N6 15 0.021914486370454 0.00173844346820322 0.0444010778857735 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_126696661_126696676 ENSMUST00000030642.2 56 chr4:126687099+126706057 56 15 GAACTTTTAATGCAG 1 89.2014603556 0.439526328131 6.8899678296e-08 chr4_+_126696661_126696676|89.2014603556|0.439526328131 1.06844734171219e-08 IN ENSMUST00000030642 Novel NA Excluded E1 6 4.67466766911976e-06 -8.85631143453962e-07 5.77295304758895e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_127088328_127088336 ENSMUST00000151461.7 0 chr4:127087041+127092911 0 8 GCTTTCAG 1 81.1342597748 1.6757500004 0.0855031108557 chr4_+_127088328_127088336|81.1342597748|1.6757500004 0.0322278186681857 IN ENSMUST00000151461 Annotated Alt3 Excluded E1 6 -0.000183574191853967 0.000755597779946325 -0.00013964951557439 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_129340727_129340752 ENSMUST00000106047.3 2470 chr4:129336139+129341476 2470 25 ATTTGGATCATACGGCTGATGTCCA 1 80.3160457745 4.5753448102 0 chr4_+_129340727_129340752|80.3160457745|4.5753448102 0 IN ENSMUST00000106047 Annotated NA Included I2 10 0.00201304860142336 -0.00388282716471698 0.0131602477566214 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_129605310_129605336 ENSMUST00000172774.7 1 chr4:129602261+129607086 1 26 TCTTCCTTAGCCCTGGAGAAGTACAG 1 73.1349732347 None 0 chr4_+_129605310_129605336|73.1349732347|None 0 IN ENSMUST00000172774 Novel NA Excluded E1 6 -1.21396601161623e-05 1.41132893401262e-05 3.32421019455324e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_130055466_130055493 ENSMUST00000044565.14 0 chr4:130055190+130055989 0 27 GTCCACCAGGGGACTGGAGTTAATGAG 1 88.6968869992 0.870483861632 0 chr4_+_130055466_130055493|88.6968869992|0.870483861632 0 IN ENSMUST00000044565 Annotated Alt5 Included I1 1 -0.00498859737853936 -0.00259440349129808 -0.0032339096871711 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_130056942_130056969 ENSMUST00000044565.14 0 chr4:130056025+130057992 0 27 GTCACACTTGGTCCCTCTGGCCTCAAG 1 87.7545494725 1.76709676041 0 chr4_+_130056942_130056969|87.7545494725|1.76709676041 0 IN ENSMUST00000044565 Annotated NA Included I1 1 3.19628792118923e-23 5.22560752521261e-23 -1.05527686911723e-22 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_130072254_130072281 ENSMUST00000044565.14 0 chr4:130068753+130072825 0 27 GGCCAAAAGGGATCACGAGGCGAGAAA 1 89.1814693898 1.77809679244 0 chr4_+_130072254_130072281|89.1814693898|1.77809679244 0 IN ENSMUST00000044565 Annotated NA Included I1 1 -1.98490373976819e-33 -2.39452746769396e-32 1.49877704428086e-31 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_130122925_130122950 ENSMUST00000118199.7 6 chr4:130121441+130125062 6 25 GGTCCTTGGAAGTTCCACCTCCAAG 1 82.3529490973 -0.135172414497 0 chr4_+_130122925_130122950|82.3529490973|-0.135172414497 0 IN ENSMUST00000118199 Novel NA Excluded E1 6 4.80204299958622e-06 0.000536148758612246 0.00093361886305824 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_130718156_130718166 ENSMUST00000105992.8 1 chr4:130701110+130727997 1 10 CTCTTGCCAG 1 79.486990387 3.81535713162 0.000100104715566 chr4_+_130718156_130718166|79.486990387|3.81535713162 5.01803263198708e-05 IN ENSMUST00000105992 Novel NA Excluded E2 3 -0.00352681723235139 0.00138716060092716 0.0026487101128769 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_132282614_132282632 ENSMUST00000105963.1 162 chr4:132274487+132282793,chr4:132282078+132282793 112,50 18 ATGGTTTCTAAAAACCAG 1 76.4036860302 1.23045455529 3.93924892705e-11 chr4_+_132282614_132282632|76.4036860302|1.23045455529 3.02484703951222e-11 IN ENSMUST00000105963 Missing in GENCODE NA Excluded E1 6 0.000623985174967331 -0.00130649362525855 0.00186303798196964 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_133243052_133243076 ENSMUST00000030677.6 0 chr4:133242957+133243310 0 24 GAGGATGTTTTCCAGAAGAACTCG 1 81.1207598307 2.62289289917 1.15463194561e-12 chr4_+_133243052_133243076|81.1207598307|2.62289289917 4.36206626375224e-13 IN ENSMUST00000030677 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr4_+_134109090_134109119 ENSMUST00000131329.7 1 chr4:134102648+134116030 1 29 GAGACGAGGGATAAGAGTCTACGGAAATG 1 80.8904321408 1.16893937876 0 chr4_+_134109090_134109119|80.8904321408|1.16893937876 0 IN ENSMUST00000131329 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr4_+_134325044_134325067 ENSMUST00000105875.7 0 chr4:134323237+134325583 0 23 AGTGCCAAGCAGCTCATCAAGAG 1 85.9114100526 2.52351851927 3.29549720846e-11 chr4_+_134325044_134325067|85.9114100526|2.52351851927 6.16851014711983e-12 IN ENSMUST00000105875 Annotated NA Included I1 1 -6.08585018108723e-07 1.6013994214403e-07 -3.54843766831153e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_135810934_135810957 ENSMUST00000105854.1 0 chr4:135810785+135812443 0 23 GGCCTTGGCTGTCATTGAGAAGA 1 81.2507183714 2.37718513987 2.31779040405e-11 chr4_+_135810934_135810957|81.2507183714|2.37718513987 8.56004156446488e-12 IN ENSMUST00000105854 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr4_+_137510158_137510167 MmuEX0023411 0 chr4:137508464+137510541 0 9 TGACACCAG 1 79.2784835786 1.60499997781 0.00784251577134 chr4_+_137510158_137510167|79.2784835786|1.60499997781 0.00406974857928111 IN MmuEX0023411 Missing in GENCODE NA Excluded E2 3 -0.00155628843123555 -0.011438638105651 0.00551200829518907 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_137559950_137559968 ENSMUST00000030547.14 150 chr4:137559430+137560412 150 18 GCCTCCTTCTCTACTCAG 1 87.8440772345 1.31268181855 5.45696821064e-11 chr4_+_137559950_137559968|87.8440772345|1.31268181855 8.82827144721432e-12 IN ENSMUST00000030547 Missing in GENCODE NA Excluded E3 2 0.000544834718602204 -0.0343459744542605 -0.000721079917580577 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_137619959_137619974 ENSMUST00000105840.7 8 chr4:137616507+137621061 8 15 CAACATCTCTGTGAG 1 83.4259356989 1.47631579638 1.64982337791e-08 chr4_+_137619959_137619974|83.4259356989|1.47631579638 4.24517820896142e-09 IN ENSMUST00000105840 Novel Alt5 Excluded E1 6 1.69396029955344e-05 -5.39478575880566e-05 0.000302441901749274 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_137655222_137655249 ENSMUST00000105840.7 0 chr4:137653006+137656121 0 27 TTTGTATGCCGGAAGAGGGCTTTAAAG 1 92.0029922229 4.83858059779 0 chr4_+_137655222_137655249|92.0029922229|4.83858059779 0 IN ENSMUST00000105840 Annotated Alt5 Included I2 10 0.000800043874962794 -0.0019998572701698 -0.00505674182535369 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_138095908_138095929 ENSMUST00000105830.8 703 chr4:138082988+138096751,chr4:138084370+138096751,chr4:138087565+138096751 292,203,208 21 GGAGGATTCAGACCCATCCAG 1 77.9022143464 5.62151993513 8.13660250287e-12 chr4_+_138095908_138095929|77.9022143464|5.62151993513 5.21271914522003e-12 IN ENSMUST00000105830 Annotated NA Neuronal N3 17 0.0547627739154628 0.0204367925596671 0.0435101754930618 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr4_+_138998023_138998051 ENSMUST00000043042.9 0 chr4:138996572+139010468 0 28 GACCTCCTGAGCTTCTCACTCAAGAATG 1 87.8479096994 2.16881250148 0 chr4_+_138998023_138998051|87.8479096994|2.16881250148 0 IN ENSMUST00000043042 Annotated NA Included I1 1 3.69908349698144e-20 3.35647894041533e-20 -3.14278778670503e-21 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_139019394_139019408 ENSMUST00000043042.9 44 chr4:139010601+139019572 44 14 GATGGATCTGCTGG 1 77.9269009449 1.43299999999 1.30283288602e-07 chr4_+_139019394_139019408|77.9269009449|1.43299999999 8.31784728871909e-08 IN ENSMUST00000043042 Missing in GENCODE NA Neuronal N6 15 0.0158157574661208 0.00432254938891797 0.0201568175516699 TRUE FALSE TRUE FALSE FALSE FALSE chr4_+_139364330_139364339 ENSMUST00000042096.14 2312 chr4:139363779+139365194 2312 9 CGATTCAAG 1 75.8028522033 3.60869239844 2.08912099251e-05 chr4_+_139364330_139364339|75.8028522033|3.60869239844 1.69699011670632e-05 IN ENSMUST00000042096 Annotated NA Neuro-Muscular NM2 9 0.0643235880524348 -0.0545135702585309 0.013957984457288 TRUE TRUE TRUE 12.5 1 12.5 1 TRUE TRUE FALSE chr4_+_140999041_140999049 ENSMUST00000156995.7 103 chr4:140996799+140999127,chr4:140996799+140999234 100,3 8 TCACAGAG 1 81.4443096407 0.269583327385 0.000138034833729 chr4_+_140999041_140999049|81.4443096407|0.269583327385 4.92852821321055e-05 IN ENSMUST00000156995 Novel NA Excluded E1 6 0.000401657169647506 0.000599923798458989 0.000492259468106569 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_141014055_141014082 ENSMUST00000166376.8 0 chr4:141013859+141014188 0 27 ACAACGCAGACTACTATGACTACCAAG 1 84.6923064095 2.00709677247 0 chr4_+_141014055_141014082|84.6923064095|2.00709677247 0 IN ENSMUST00000166376 Annotated NA Included I1 1 -1.1633547651893e-106 1.29291503950084e-106 4.29644028901084e-106 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_146270685_146270696 ENSMUST00000146671.7 1 chr4:146270481+146272882 1 11 GAGCTGGGCAG 1 72.500406811 None 2.22213319512e-06 chr4_+_146270685_146270696|72.500406811|None 2.13122631342877e-06 IN ENSMUST00000146671 Novel NA Excluded E3 2 0.00910804680613512 0.00298269833344738 0.000561653656300132 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_148143613_148143642 ENSMUST00000140049.7 0 chr4:148140979+148144263 0 29 ATCACTCAGCCTCCCTTGCTGTCCATCAA 1 79.8725156434 3.66196970777 0 chr4_+_148143613_148143642|79.8725156434|3.66196970777 0 IN ENSMUST00000140049 Annotated Alt5 Excluded E3 2 -0.00149575761376349 -0.000544730545244317 -0.00628465014599088 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_148161469_148161499 ENSMUST00000047951.8 1 chr4:148160711+148164074 1 30 GAAGTCCCTGGGCTCAGGGGCCCAATCCAG 1 88.2715179182 0.985117665109 0 chr4_+_148161469_148161499|88.2715179182|0.985117665109 0 IN ENSMUST00000047951 Novel NA Excluded E1 6 0.000209707296559416 -0.00166934822716284 0.000211913443345673 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_148563474_148563503 ENSMUST00000017408.13 91 chr4:148563135+148563586,chr4:148563135+148563843 75,16 29 CCCAGCCTGGCCTTTAACACACTGTTAAG 1 86.4175716377 0.143515154268 0 chr4_+_148563474_148563503|86.4175716377|0.143515154268 0 IN ENSMUST00000017408 Novel NA Excluded E1 6 0.000964984281279609 0.000125534091624768 0.00204649106252517 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_149626086_149626116 ENSMUST00000105691.7 763 chr4:149614172+149627211 763 30 AGAGTTTTGAGGTGACAGTCACCAAAGAAG 1 84.3413769176 5.5231175633 0 chr4_+_149626086_149626116|84.3413769176|5.5231175633 0 IN ENSMUST00000105691 Annotated NA Muscular M1 22 -0.011288840031631 -0.065140999025755 0.0343502853337042 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_154270724_154270751 ENSMUST00000152159.7 0 chr4:154270021+154271610 0 27 GGCGTGCAGGAACCACATGTGACCTAG 1 85.4158826945 1.85645162717 0 chr4_+_154270724_154270751|85.4158826945|1.85645162717 0 IN ENSMUST00000152159 Annotated Alt5 Excluded E2 3 -0.000774202960667387 -0.000761840385293963 0.00271253656062014 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_155515656_155515679 ENSMUST00000105616.9 1 chr4:155491580+155527412 1 23 ACCAGAAACACTTCTGAGTCAAG 1 72.6809469834 1.20737037592 0 chr4_+_155515656_155515679|72.6809469834|1.20737037592 0 IN ENSMUST00000105616 Novel Alt5 Excluded E2 3 0.00366157679192672 -0.000447535939800267 0.00808159664078869 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_155610500_155610525 ENSMUST00000151425.1 0 chr4:155610319+155612630 0 25 GTGCTGTGCAGATGCTGTCAACAAC 1 76.4877585718 3.64586199891 2.02682315376e-12 chr4_+_155610500_155610525|76.4877585718|3.64586199891 1.54298795962404e-12 IN ENSMUST00000151425 Annotated Alt3 Excluded E2 3 -2.0469558167709e-05 -0.0013770943432104 -0.00208288037940373 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_155625747_155625773 ENSMUST00000067081.9 5 chr4:155625654+155626773 5 26 TTCTTTTGTACTTCCAAATGTCACAG 1 80.0190815322 1.40963332852 0 chr4_+_155625747_155625773|80.0190815322|1.40963332852 0 IN ENSMUST00000067081 Novel Alt5 Excluded E1 6 -0.000470902214863785 -0.000215495511635983 0.00341820661385348 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_155724725_155724733 ENSMUST00000030905.8 1 chr4:155715605+155731324 1 8 CTCCTTGG 1 69.1556316708 None 0.000935772075366 chr4_+_155724725_155724733|69.1556316708|None 0.000930803761961752 IN ENSMUST00000030905 Novel NA Excluded E1 6 3.28211914070829e-05 -5.93077652943503e-05 0.000139050168074915 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_155818538_155818552 ENSMUST00000030944.10 187 chr4:155817987+155820328 187 14 GGTAGCCTCTGAGG 1 83.3876110496 4.43800005648 3.38040985204e-08 chr4_+_155818538_155818552|83.3876110496|4.43800005648 8.74926797678199e-09 IN ENSMUST00000030944 Novel Alt3 Excluded E2 3 -0.000236809994453344 0.00113674176666965 -0.000837155796512708 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_155840777_155840798 ENSMUST00000141883.7 0 chr4:155839890+155840905,chr4:155839890+155840914 0 21 GCTCTGCAGTCCTGTCCTCAG 1 90.2569073879 0.562959999889 2.25099938689e-10 chr4_+_155840777_155840798|90.2569073879|0.562959999889 3.49933415577652e-11 IN ENSMUST00000141883 Annotated NA Included I1 1 -3.26475587935574e-62 3.14564103552646e-63 -1.26403602849632e-61 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_155895491_155895517 ENSMUST00000105584.9 7 chr4:155892441+155896110 7 26 GGCATCTTCTTTATCAGCCTGGATTG 1 81.74151557 0.193233340366 0 chr4_+_155895491_155895517|81.74151557|0.193233340366 0 IN ENSMUST00000105584 Novel Alt3 Excluded E1 6 -0.00110461678138745 0.00100858850427289 -0.000850200698288504 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_155901003_155901015 ENSMUST00000079031.5 1013 chr4:155900361+155901674 1013 12 ACACTCCTGCAG 1 84.4684006879 1.46849999297 3.019812993e-07 chr4_+_155901003_155901015|84.4684006879|1.46849999297 6.69309645484617e-08 IN ENSMUST00000079031 Annotated NA Included I1 1 0.00015627389661589 -0.000464347136522134 0.000186148984600611 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_155955565_155955570 ENSMUST00000103175.7 1 chr4:155955560+155956367 1 5 GTGTG 1 65.5896093658 1.17522221886 0.00303950554557 chr4_+_155955565_155955570|65.5896093658|1.17522221886 0.00303832806972903 IN ENSMUST00000103175 Novel NA Other O2 21 -0.0139308151079242 0.00762199507688944 -0.0575632130183508 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_156123975_156124001 ENSMUST00000072554.12 0 chr4:156123669+156124091 0 26 CCCCTGTCCTGCAGCCTGGTGAGACA 1 82.6272638172 1.74396667263 8.70414851306e-14 chr4_+_156123975_156124001|82.6272638172|1.74396667263 2.54241072639161e-14 IN ENSMUST00000072554 Annotated Alt3 Other O1 4 -0.000709208113464743 0.000713770363920915 0.00466631693684036 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_33323654_33323668 ENSMUST00000108153.8 1 chr4:33320628+33324873 1 14 GAAGAGAGATATAC 1 72.4023164247 0.389944445756 6.15109437829e-08 chr4_+_33323654_33323668|72.4023164247|0.389944445756 5.91255744364361e-08 IN ENSMUST00000108153 Novel NA Excluded E1 6 0.000577296800927189 0.00143845063430257 0.00070890731408676 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_43087902_43087932 ENSMUST00000079978.12 0 chr4:43059285+43165743,chr4:43059285+43091227,chr4:43059285+43115102 0 30 TTAAAAGAGCCAAATTCCAGGGTTCACCAG 1 93.2109092116 3.53038236061 0 chr4_+_43087902_43087932|93.2109092116|3.53038236061 0 IN ENSMUST00000079978 Annotated NA Included I1 1 -0.00015872189739429 -0.000129957390531887 0.000133044650836135 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_43227924_43227947 ENSMUST00000079978.12 48 chr4:43182859+43230117 48 23 AAGGAAATCAAGAAGCTATTCAG 1 78.7231214301 2.38611108975 0 chr4_+_43227924_43227947|78.7231214301|2.38611108975 0 IN ENSMUST00000079978 Annotated NA Neuro-Muscular NM4 16 0.0231847837299083 0.00884630402174359 0.0709842901567294 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_43233903_43233909 ENSMUST00000079978.12 863 chr4:43232608+43234665 863 6 GCTATG 1 84.2025795389 3.10329998508 0.00195026800763 chr4_+_43233903_43233909|84.2025795389|3.10329998508 0.00044814058986764 IN ENSMUST00000079978 Annotated NA Neuronal N1 18 0.0523877019895246 0.0345286565446307 0.0247108933512701 TRUE TRUE TRUE FALSE FALSE FALSE chr4_+_43260992_43261007 ENSMUST00000079978.12 1 chr4:43259609+43261681 1 15 TACATGATGGGAAAG 1 75.435591577 4.86631582364 7.46877049096e-09 chr4_+_43260992_43261007|75.435591577|4.86631582364 6.25038432122693e-09 IN ENSMUST00000079978 Novel Alt3 Excluded E1 6 0.000642153857355858 -0.0023979789349506 0.00164850537462494 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_43508313_43508343 ENSMUST00000030183.9 0 chr4:43507395+43508602,chr4:43507927+43508602 0 30 GGGGTGGCCACAGTCATTGGAGCTATGGAG 1 86.1218848836 1.73788234361 0 chr4_+_43508313_43508343|86.1218848836|1.73788234361 0 IN ENSMUST00000030183 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr4_+_43512411_43512438 ENSMUST00000030183.9 0 chr4:43512277+43512851,chr4:43510259+43512851,chr4:43510263+43512851 0 27 TCCATGTGAATTCCTGCTTCACTGCTG 1 86.6673723926 1.2947419326 0 chr4_+_43512411_43512438|86.6673723926|1.2947419326 0 IN ENSMUST00000030183 Annotated Alt5 Included I2 10 -0.00931799169512568 -0.00565664736501255 -0.0237721745602469 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_43673899_43673906 ENSMUST00000143339.7 1 chr4:43670034+43680658 1 7 GAGGCCT 1 66.8402704229 3.78172728013 0.0025271380782 chr4_+_43673899_43673906|66.8402704229|3.78172728013 0.00252456326993455 IN ENSMUST00000143339 Novel Alt3 Excluded E1 6 0.00117132345027546 -0.000877363105982529 -0.000856422041779277 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_44031426_44031435 ENSMUST00000107846.9 102 chr4:44025560+44032400,chr4:44030268+44032400 22,80 9 CCTAGAACA 1 68.1190707495 5.91161544506 3.15750623022e-05 chr4_+_44031426_44031435|68.1190707495|5.91161544506 3.14931636030691e-05 IN ENSMUST00000107846 Novel Alt5 Excluded E1 6 0.000698209230277843 -0.000421165926920657 0.00182303697348008 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_46145588_46145592 ENSMUST00000030014.8 1 chr4:46145474+46147378 1 4 GAAT 1 66.137237531 0.325250003487 0.0285163935585 chr4_+_46145588_46145592|66.137237531|0.325250003487 0.0284994140387367 IN ENSMUST00000030014 Novel NA Excluded E1 6 0.000846399832144488 0.0003994817212025 0.00133407929052457 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_47288477_47288503 ENSMUST00000082303.12 20 chr4:47287092+47289333 20 26 GACTGCCTTTCCTCGCCAACAAAGTG 1 81.714619262 1.22703332858 0 chr4_+_47288477_47288503|81.714619262|1.22703332858 0 IN ENSMUST00000082303 Novel Alt5 Neuronal N4 13 0.049586165751792 0.0226595923552657 0.0300550765105424 TRUE TRUE TRUE FALSE FALSE FALSE chr4_+_48614956_48614983 ENSMUST00000030032.12 0 chr4:48610542+48617234,chr4:48610542+48617231 0 27 ATAACGGCTCTGGATCTGGAGAAGGAG 1 90.794143013 3.75248377241 0 chr4_+_48614956_48614983|90.794143013|3.75248377241 0 IN ENSMUST00000030032 Annotated NA Included I1 1 1.82099458231968e-47 -1.95191379217106e-47 -5.39821651899391e-47 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_53655740_53655763 ENSMUST00000132151.7 0 chr4:53649893+53659512 0 23 GCTGCCAGACAGATCAAGGATAG 1 78.1486660105 5.86288900729 1.36310518428e-10 chr4_+_53655740_53655763|78.1486660105|5.86288900729 8.4321771787188e-11 IN ENSMUST00000132151 Annotated NA Included I1 1 4.06793876934756e-11 -1.16163438213339e-10 -9.60485529513505e-11 TRUE TRUE TRUE 12.5 1 10.5 1 FALSE FALSE FALSE chr4_+_57689522_57689544 ENSMUST00000102905.7 0 chr4:57688530+57757600,chr4:57688530+57698489,chr4:57688530+57709450 0 22 AGTTTCTCCACTGCTGATGGAG 1 89.9457181406 2.54488462203 5.64625679544e-10 chr4_+_57689522_57689544|89.9457181406|2.54488462203 8.74281758100892e-11 IN ENSMUST00000102905 Annotated NA Included I1 1 -2.9694784304627e-35 2.71142954577056e-35 7.81933755064149e-35 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_58327325_58327355 ENSMUST00000081919.11 64 chr4:58303986+58333564 64 30 AAGACAGAGAACCTGAGCAGGACGCTAAAG 1 78.283423764 2.65999997933 0 chr4_+_58327325_58327355|78.283423764|2.65999997933 0 IN ENSMUST00000081919 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr4_+_58347852_58347859 ENSMUST00000177951.7 0 chr4:58344311+58353936,chr4:58344318+58353943,chr4:58344311+58353943 0 7 AATGGAG 1 83.6603720674 2.98663636229 0.443584249802 chr4_+_58347852_58347859|83.6603720674|2.98663636229 0.11018086326129 RESCUED ENSMUST00000177951 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr4_+_58356481_58356505 ENSMUST00000098059.9 56 chr4:58355856+58366797 56 24 ATTATAAAAAAGAAAACATAACAA 1 86.446815762 2.58839283408 0 chr4_+_58356481_58356505|86.446815762|2.58839283408 0 IN ENSMUST00000098059 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr4_+_62488185_62488211 ENSMUST00000030088.11 0 chr4:62486643+62494732 0 26 CAGAGGGAACAGGAGATTTTTGAGAG 1 91.8901244042 2.36216663271 1.78945747109e-12 chr4_+_62488185_62488211|91.8901244042|2.36216663271 2.96762614482304e-13 IN ENSMUST00000030088 Annotated NA Included I1 1 5.82902687272234e-08 1.38565116565845e-08 2.28704409139007e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_63324771_63324789 ENSMUST00000036300.12 0 chr4:63324666+63325175 0 18 GGACTGCAAGGCCCAAGG 1 85.679252447 3.24018180912 7.08678271621e-09 chr4_+_63324771_63324789|85.679252447|3.24018180912 1.35862721073465e-09 IN ENSMUST00000036300 Annotated NA Included I1 1 2.16807239281163e-07 1.64936787786085e-06 -4.86477278324277e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_63326123_63326150 ENSMUST00000036300.12 0 chr4:63325211+63327829 0 27 GGCCCTCCTTGGCATCCCATCCAGTTT 1 82.6671421685 1.44303224476 0 chr4_+_63326123_63326150|82.6671421685|1.44303224476 0 IN ENSMUST00000036300 Annotated NA Included I1 1 1.1466630697952e-08 1.29263324029588e-07 -3.27066240365433e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_74313009_74313037 ENSMUST00000077851.9 98 chr4:74311750+74315511 98 28 CATGGCAGATTTGTTGTCATTAATGGAG 1 88.4023050999 None 0 chr4_+_74313009_74313037|88.4023050999|None 0 IN ENSMUST00000077851 Missing in GENCODE NA Excluded E1 6 0.00211758450741566 0.000749298319242409 0.000149594328211798 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_74373374_74373401 ENSMUST00000077851.9 78 chr4:74359528+74373565 78 27 AGAGCGGTGATTTTTAAAAATACCAAG 1 84.5946303437 0.252096781417 0 chr4_+_74373374_74373401|84.5946303437|0.252096781417 0 IN ENSMUST00000077851 Novel NA Excluded E1 6 0.000690557757247681 -0.000739589012347512 0.00131271148319628 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_94632554_94632584 ENSMUST00000107104.2 78 chr4:94627312+94632676 78 30 GAAATAAGATATGTGGAAGGAAGTGACTAG 1 86.6844285879 0.129794119693 0 chr4_+_94632554_94632584|86.6844285879|0.129794119693 0 IN ENSMUST00000107104 Missing in GENCODE NA Excluded E1 6 0.000638288011287103 -9.13363277101735e-05 0.000457629692649708 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_95623556_95623569 ENSMUST00000134012.8 0 chr4:95601116+95696959,chr4:95585304+95696959 0 13 GTGTCACAGCACG 1 71.0729344663 2.94241173828 0.0014268996074 chr4_+_95623556_95623569|71.0729344663|2.94241173828 0.00140114472425623 IN ENSMUST00000134012 Annotated Alt5 Excluded E2 3 -0.0015940384248575 0.000535069642359253 -0.00365197686948444 TRUE FALSE FALSE FALSE FALSE FALSE chr4_+_98469219_98469239 ENSMUST00000041284.9 137 chr4:98465195+98469472 137 20 AGCTCATTGAAGTATAAGAG 1 75.4453281096 2.08970832328 1.51096912759e-11 chr4_+_98469219_98469239|75.4453281096|2.08970832328 1.26354482432589e-11 IN ENSMUST00000041284 Missing in GENCODE NA Neuronal N4 13 0.0420518696751025 0.0146116876714582 0.0542596584096472 TRUE TRUE FALSE 13.5 1 FALSE FALSE FALSE chr4_-_108567613_108567640 ENSMUST00000079213.5 0 chr4:108567520-108568357 0 27 GCGGAGTAGATCCCCTAAAAGAAGAAG 1 86.6567036389 3.52532259159 0 chr4_-_108567613_108567640|86.6567036389|3.52532259159 0 IN ENSMUST00000079213 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_108831705_108831728 ENSMUST00000102741.7 52 chr4:108830583-108832412,chr4:108830583-108833142,chr4:108830583-108833507 2,5,45 23 CCTTACAGCTGCGATATATACAG 1 75.5243252246 0.440555549347 0 chr4_-_108831705_108831728|75.5243252246|0.440555549347 0 IN ENSMUST00000102741 Novel NA Excluded E1 6 -0.000216495528835652 0.00132321613214895 0.000408489078322957 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_116067644_116067663 ENSMUST00000050580.10 87 chr4:116067172-116069862 87 19 GCGTGGGATACATGTTGTG 1 80.3843741359 0.354086951596 3.79003495254e-11 chr4_-_116067644_116067663|80.3843741359|0.354086951596 1.629008039572e-11 IN ENSMUST00000050580 Novel NA Excluded E1 6 4.54506995462353e-05 3.20415678728228e-05 -4.29635089422608e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_116067644_116067666 ENSMUST00000050580.10 90 chr4:116067172-116069862 90 22 CAGGCGTGGGATACATGTTGTG 1 82.2874519263 0.285115381165 5.9152682752e-13 chr4_-_116067644_116067666|82.2874519263|0.285115381165 1.82742709853301e-13 IN ENSMUST00000050580 Novel NA Excluded E1 6 0.000109552662851049 4.11918994698839e-05 8.75911909076756e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_116070736_116070757 ENSMUST00000050580.10 0 chr4:116070024-116074915,chr4:116069919-116074915 0 21 GAAGAAGAGGAAGAACTAGTG 1 85.8733961436 2.13244001269 1.10640030471e-09 chr4_-_116070736_116070757|85.8733961436|2.13244001269 2.07891259762505e-10 IN ENSMUST00000050580 Annotated Alt3 Included I2 10 -0.00390512138349809 -0.000756183735527985 -0.00687564944331842 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_116332639_116332662 ENSMUST00000003908.10 1 chr4:116330469-116337421 1 23 ATCACCCAGGACCCATCGGAAAG 1 85.834035693 0.252518520863 0 chr4_-_116332639_116332662|85.834035693|0.252518520863 0 IN ENSMUST00000003908 Novel NA Excluded E2 3 0.00727570226651327 0.00211948591076901 0.011605634678269 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_116333412_116333433 ENSMUST00000106484.7 0 chr4:116330469-116337421 0 21 CCATGGCCACAGAACAGACAG 1 84.4902906227 4.4080800128 1.5750174498e-09 chr4_-_116333412_116333433|84.4902906227|4.4080800128 3.48072459743776e-10 IN ENSMUST00000106484 Annotated Alt3 Neuronal N1 18 0.0663723576057762 0.0257411937334228 0.0304423917351688 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr4_-_116391602_116391631 ENSMUST00000144281.1 0 chr4:116353064-116405362 0 29 GAATTGAGCCTTCCAAGGAGAGGCAGCTT 1 81.0092040271 1.98854549444 0 chr4_-_116391602_116391631|81.0092040271|1.98854549444 0 IN ENSMUST00000144281 Annotated Alt5 Excluded E3 2 -0.00130617513186627 0.0023910886604009 -0.00259837147491435 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_117881798_117881817 ENSMUST00000137016.1 2 chr4:117881507-117883101 2 19 GTAGAACACAAACAAGCCC 1 80.3501581651 0.112826082977 2.23252527576e-11 chr4_-_117881798_117881817|80.3501581651|0.112826082977 9.65316715451081e-12 IN ENSMUST00000137016 Novel Alt3 Excluded E2 3 0.000229735594835904 0.00129495917830692 -0.00383579026509523 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_117903693_117903720 ENSMUST00000036156.5 0 chr4:117903532-117903797 0 27 GATGTGCTGATGAAGCAGATTCACAAG 1 84.4402614183 3.71974199415 0 chr4_-_117903693_117903720|84.4402614183|3.71974199415 0 IN ENSMUST00000036156 Annotated NA Included I1 1 3.2152299184733e-103 -9.21336005397583e-104 -1.17163893177018e-103 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_118221570_118221582 ENSMUST00000049074.12 106 chr4:118220608-118223225 106 12 TAAACAAGAAAG 1 74.5050967123 4.15943743289 6.05592320846e-07 chr4_-_118221570_118221582|74.5050967123|4.15943743289 5.38696782848014e-07 IN ENSMUST00000049074 Missing in GENCODE NA Excluded E1 6 0.00284272170158803 0.00115754552496922 0.00285078586609206 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_118227818_118227845 ENSMUST00000049074.12 568 chr4:118226571-118230694 568 27 TGGAGACCAGAGGAGTCCGAGGACTAT 1 78.446562474 2.86767742086 0 chr4_-_118227818_118227845|78.446562474|2.86767742086 0 IN ENSMUST00000049074 Annotated NA Neuronal N1 18 0.0578930203331403 0.0267414461957834 0.0116392406797945 TRUE TRUE TRUE 11.5 1 14.5 1 FALSE FALSE FALSE chr4_-_118245289_118245301 ENSMUST00000049074.12 269 chr4:118238008-118248898 269 12 ATCAGCGAGAAG 1 81.5781696997 5.18993756175 2.53179721443e-06 chr4_-_118245289_118245301|81.5781696997|5.18993756175 8.83189285039165e-07 IN ENSMUST00000049074 Missing in GENCODE NA Excluded E2 3 0.0085345046617085 0.000720765283258441 0.00525846845188451 TRUE FALSE FALSE FALSE FALSE TRUE chr4_-_118252075_118252093 ENSMUST00000049074.12 524 chr4:118249009-118257488 524 18 GTGGTTCACCAATCAGAG 1 83.4552834034 5.19704535874 4.80724793306e-10 chr4_-_118252075_118252093|83.4552834034|5.19704535874 1.23144272556885e-10 IN ENSMUST00000049074 Annotated NA Neuronal N3 17 0.051955309479747 0.0189633373524659 0.037122666175581 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr4_-_119179956_119179983 ENSMUST00000138395.7 0 chr4:119178726-119180072 0 27 GCTGGAGAAGAGCCCGGCTACATTTTG 1 88.2038110377 1.7663225549 0 chr4_-_119179956_119179983|88.2038110377|1.7663225549 0 IN ENSMUST00000138395 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr4_-_119180072_119180099 ENSMUST00000138395.7 0 chr4:119179983-119180200,chr4:119179983-119189805 0 27 AGTTGAAAAGAGCGGCGGCCAATGCAG 1 88.15906442 1.53809677515 0 chr4_-_119180072_119180099|88.15906442|1.53809677515 0 IN ENSMUST00000138395 Annotated NA Included I1 1 -6.10389369471638e-05 3.23386553422373e-05 -0.000254642568266929 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_119180200_119180221 ENSMUST00000138395.7 0 chr4:119180099-119189805,chr4:119180099-119181365,chr4:119179983-119189805 0 21 AGAAACTCCGGAGTGAACTGA 1 84.7323919211 1.70247998934 2.82170731225e-10 chr4_-_119180200_119180221|84.7323919211|1.70247998934 6.04256644720635e-11 IN ENSMUST00000138395 Annotated NA Included I1 1 4.82460438945662e-05 -4.19950062497682e-05 0.000224307767996327 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_119181365_119181386 ENSMUST00000138395.7 0 chr4:119180099-119189805,chr4:119179983-119189805,chr4:119180221-119182842 0 21 GAAGACTCCACAAAGCCCTCA 1 87.512102907 1.74783999138 5.90262061451e-10 chr4_-_119181365_119181386|87.512102907|1.74783999138 9.7230890006017e-11 IN ENSMUST00000138395 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr4_-_119183309_119183338 ENSMUST00000030396.13 0 chr4:119180099-119189805,chr4:119179983-119189805,chr4:119182875-119183910 0 29 AGAAGCTGCTGTATGAGCAAGCGATGGAG 1 85.5778474964 1.46381819937 0 chr4_-_119183309_119183338|85.5778474964|1.46381819937 0 IN ENSMUST00000030396 Annotated Alt3 Excluded E4 11 -0.00145305720616135 0.0126801984452246 0.00783949436846654 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_121188969_121188995 ENSMUST00000056635.12 2 chr4:121188296-121190103 2 26 CTGAATCTCTGACATTTTTGTGGAAG 1 85.4122228632 0.133766662081 0 chr4_-_121188969_121188995|85.4122228632|0.133766662081 0 IN ENSMUST00000056635 Novel NA Excluded E1 6 0.000895377787880865 -2.15386310944211e-05 0.00204991802663126 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_12165765_12165771 ENSMUST00000108285.8 0 chr4:12164192-12168222,chr4:12164274-12168222,chr4:12164192-12168228,chr4:12164192-12168178 0 6 TCGCAG 1 73.913861311 2.67589998245 0.613209447439 chr4_-_12165765_12165771|73.913861311|2.67589998245 0.561613925856463 RESCUED ENSMUST00000108285 Annotated Alt3 Included I2 10 -0.00193659756319743 -0.00603493719627481 0.00534535799014175 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_12169957_12169978 ENSMUST00000108285.8 646 chr4:12169033-12170983,chr4:12169058-12170983 645,1 21 ATGCTAATGAACATGGCAAAG 1 70.137951129 1.57103999317 1.68753899743e-12 chr4_-_12169957_12169978|70.137951129|1.57103999317 1.67044156285101e-12 IN ENSMUST00000108285 Annotated NA Neuronal N6 15 0.0260955387741023 0.00997384818630509 0.020975156648761 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr4_-_123136871_123136898 ENSMUST00000030404.4 0 chr4:123135677-123137525 0 27 GATGCGGCAGCAGCTATCGACAACATG 1 81.1167892589 4.1705805683 0 chr4_-_123136871_123136898|81.1167892589|4.1705805683 0 IN ENSMUST00000030404 Annotated Alt3 Included I2 10 -0.00256292561699237 -0.00330895543441869 -0.00210631140282614 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_123364056_123364074 ENSMUST00000134458.7 1247 chr4:123361027-123365272 1247 18 TTCTTCCTCGGCAATCAG 1 75.9907810919 6.05990908363 2.40049757849e-10 chr4_-_123364056_123364074|75.9907810919|6.05990908363 1.91785920478083e-10 IN ENSMUST00000134458 Annotated NA Neuro-Muscular NM3 19 0.029867001390151 -0.0303672594346169 0.0162140250921247 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE TRUE FALSE chr4_-_123368820_123368832 ENSMUST00000106213.7 525 chr4:123368037-123369804 525 12 CTATGCCCGGAA 1 73.5051686314 2.41362497956 4.07686373993e-07 chr4_-_123368820_123368832|73.5051686314|2.41362497956 3.79563595553911e-07 IN ENSMUST00000106213 Annotated NA Excluded E2 3 0.00378198832870472 -0.000545214961716269 0.0145595466564457 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_123368820_123368835 ENSMUST00000106213.7 323 chr4:123368037-123369804 323 15 CAGCTATGCCCGGAA 1 73.7207534156 2.58073681907 6.3591869548e-09 chr4_-_123368820_123368835|73.7207534156|2.58073681907 5.87155313258592e-09 IN ENSMUST00000106213 Annotated NA Excluded E1 6 0.00290075049894303 -4.45834567917589e-05 0.00877345181354839 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_123386548_123386557 ENSMUST00000097897.10 670 chr4:123385686-123387227 670 9 ATCACAGAG 1 80.9108719538 3.28284617513 2.27687152627e-05 chr4_-_123386548_123386557|80.9108719538|3.28284617513 8.92466328716868e-06 IN ENSMUST00000097897 Annotated NA Non-Neuronal NN1 23 -0.0649973472441013 0.0153823139319813 -0.0315854431799347 TRUE TRUE TRUE 13.5 -1 14.5 -1 FALSE FALSE FALSE chr4_-_123500752_123500758 ENSMUST00000097897.10 676 chr4:123500025-123502163 676 6 GCACAG 1 72.3562923187 3.83300001621 0.00202736203276 chr4_-_123500752_123500758|72.3562923187|3.83300001621 0.00195070096583827 IN ENSMUST00000097897 Missing in GENCODE NA Neuronal N6 15 0.0181543345065572 0.0075986263646174 0.0173402495155716 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_123717173_123717202 ENSMUST00000030401.13 1 chr4:123716081-123718112 1 29 AATCTATCCACTGCTTTATAGTTGTACGT 1 73.6860885977 0.239666667823 0 chr4_-_123717173_123717202|73.6860885977|0.239666667823 0 IN ENSMUST00000030401 Novel NA Excluded E1 6 0.000282184232055414 -7.2004566689154e-05 -0.00185471895307825 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_129620456_129620479 ENSMUST00000030586.14 0 chr4:129619446-129620682 0 23 CTGGAAGATCTTAGCAATTCCAT 1 72.32877453 3.91903705509 1.71809233507e-11 chr4_-_129620456_129620479|72.32877453|3.91903705509 1.65409907992853e-11 IN ENSMUST00000030586 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_130136042_130136058 MULTI(2) 0 chr4:130135908-130137111 0 16 ATGAGGCTCAGAGAGG 1 84.6018809531 0.507049997762 2.75438613584e-07 chr4_-_130136042_130136058|84.6018809531|0.507049997762 5.99845120241582e-08 IN MULTI(2) Missing in GENCODE NA Excluded E3 2 -0.00319748314283514 -0.00216911035162968 0.0158376654452678 TRUE FALSE TRUE FALSE FALSE FALSE chr4_-_130332974_130332978 ENSMUST00000134159.2 1 chr4:130329674-130337077 1 4 GCAG 1 75.1006824791 -0.0159999914467 0.106706072403 chr4_-_130332974_130332978|75.1006824791|-0.0159999914467 0.0914930956915719 IN ENSMUST00000134159 Novel NA Excluded E1 6 0.00185145629739311 0.00122318824705509 9.74934339252199e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_130350756_130350760 ENSMUST00000134159.2 1 chr4:130349322-130354135 1 4 GTCT 1 58.8336296934 0.514249988366 0.0706957032858 chr4_-_130350756_130350760|58.8336296934|0.514249988366 0.0706956430683764 IN ENSMUST00000134159 Novel NA Excluded E1 6 0.000269425832474287 -5.85399053860667e-05 -0.00233676281922498 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_131785742_131785760 ENSMUST00000105987.8 284 chr4:131780866-131787307 284 18 ATTCGGATAAACCGACAA 1 76.3301786623 3.83050001413 3.64877905668e-10 chr4_-_131785742_131785760|76.3301786623|3.83050001413 2.82257883732484e-10 IN ENSMUST00000105987 Annotated NA Neuro-Muscular NM4 16 0.0455184335571997 -0.031274241664719 0.0597451838991155 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr4_-_131794960_131794990 ENSMUST00000105987.8 283 chr4:131793675-131797852 283 30 GAGGGACCGCTATGCCTACTCTTACTACCC 1 75.3668143685 3.62432351467 0 chr4_-_131794960_131794990|75.3668143685|3.62432351467 0 IN ENSMUST00000105987 Annotated NA Neuronal N1 18 0.0704432486535579 -0.019966774437715 0.0477848078298188 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr4_-_132211431_132211456 ENSMUST00000152796.7 0 chr4:132210831-132211899 0 25 AGACCAAAAGGTCAAGGAAACAAAG 1 85.2978358692 4.54955175416 9.22817378068e-13 chr4_-_132211431_132211456|85.2978358692|4.54955175416 1.84519066692701e-13 IN ENSMUST00000152796 Annotated NA Included I1 1 -4.20753701283471e-140 -1.32024975879108e-140 -8.60164083052129e-140 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_132533062_132533076 ENSMUST00000152993.7 8 chr4:132530823-132533295 8 14 GACTCAGCCCAAGG 1 72.3481785416 0.0327222341051 3.57103993043e-08 chr4_-_132533062_132533076|72.3481785416|0.0327222341051 3.43660814250413e-08 IN ENSMUST00000152993 Novel NA Excluded E1 6 2.05583904015828e-05 -2.08586834687355e-06 4.08099761010485e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_133276752_133276781 ENSMUST00000105907.8 8 chr4:133271047-133277530 8 29 CTGTGGCATCCTACCTCTCACCTGAGGAG 1 75.2929962601 -0.0565151536103 0 chr4_-_133276752_133276781|75.2929962601|-0.0565151536103 0 IN ENSMUST00000105907 Novel NA Excluded E1 6 5.33754925531916e-05 2.28937998761209e-05 8.44007311721175e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_135342664_135342676 ENSMUST00000105861.7 50 chr4:135342573-135343863 50 12 ATACAGATCACA 1 70.7300842248 -0.12906250637 2.9662619605e-07 chr4_-_135342664_135342676|70.7300842248|-0.12906250637 2.92280920688448e-07 IN ENSMUST00000105861 Novel NA Excluded E1 6 0.000176140885394976 -0.000122085753431712 0.000177759154663731 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_136563437_136563449 ENSMUST00000116273.8 1285 chr4:136561160-136568572 1285 12 GACACTGTCAAG 1 71.7503140118 3.23106248677 1.72201395798e-06 chr4_-_136563437_136563449|71.7503140118|3.23106248677 1.67570121478722e-06 IN ENSMUST00000116273 Annotated NA Neuronal N3 17 0.0559924430052591 0.0219981646414629 0.0369858775782573 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr4_-_137321498_137321521 ENSMUST00000051477.12 9 chr4:137321192-137328712 9 23 AACTGCTTCCCATGTTCCCTATG 1 78.0401140307 1.21555554977 0 chr4_-_137321498_137321521|78.0401140307|1.21555554977 0 IN ENSMUST00000051477 Novel NA Excluded E1 6 0.000317400902779483 5.39080396713915e-05 0.000403443874593664 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_140568755_140568770 ENSMUST00000039204.9 283 chr4:140568520-140570256 283 15 GCCCTCCAACCACAG 1 88.7732255575 1.87015786924 6.24640961178e-09 chr4_-_140568755_140568770|88.7732255575|1.87015786924 9.76286385068192e-10 IN ENSMUST00000039204 Annotated NA Excluded E4 11 -0.0183538657255293 0.00145698741968169 0.0773614758507079 TRUE TRUE TRUE 10.5 -1 10.5 -1 FALSE FALSE FALSE chr4_-_141595894_141595913 ENSMUST00000141518.7 0 chr4:141595479-141605920,chr4:141595479-141599721,chr4:141595479-141599847,chr4:141595479-141597980 0 19 TAGGAAATCAGTCTCTCAG 1 86.3562521987 0.0206956599394 9.01491148397e-09 chr4_-_141595894_141595913|86.3562521987|0.0206956599394 1.61781466001543e-09 IN ENSMUST00000141518 Annotated Alt5 Excluded E3 2 -2.31154372448619e-05 0.00167912513554322 0.00352677387554967 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_145277525_145277551 ENSMUST00000030339.12 0 chr4:145269235-145285145,chr4:145274496-145285145 0 26 ATTCCTGTCCTACTGAAAAGCTAACC 1 89.8526686541 0.352433320632 2.3578916597e-12 chr4_-_145277525_145277551|89.8526686541|0.352433320632 3.64819285891826e-13 IN ENSMUST00000030339 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr4_-_14819094_14819119 ENSMUST00000117268.7 2 chr4:14818488-14822691 2 25 TCCTGGATTTAAAGGCATTGCACAA 1 78.7423873349 0.120586205659 0 chr4_-_14819094_14819119|78.7423873349|0.120586205659 0 IN ENSMUST00000117268 Novel Alt5 Excluded E1 6 -0.000922494621609417 0.000148708111034219 -0.00291204824290494 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_149195472_149195499 ENSMUST00000060537.12 97 chr4:149192687-149198431 97 27 GCTCTTGCTTGATAAGGATATTCCTAG 1 83.1286607161 4.77919356285 0 chr4_-_149195472_149195499|83.1286607161|4.77919356285 0 IN ENSMUST00000060537 Annotated NA Excluded E1 6 0.00157490368350321 0.000136212318635457 -0.00201008966123047 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_149265344_149265362 ENSMUST00000060537.12 0 chr4:149263690-149266251 0 18 GATAACTGCACAAGCAAG 1 85.3884339592 5.17904551463 3.69473120987e-08 chr4_-_149265344_149265362|85.3884339592|5.17904551463 7.31207649984356e-09 IN ENSMUST00000060537 Annotated NA Neuronal N1 18 0.0694758525882688 0.0373796019842608 0.00513921208047741 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr4_-_15065323_15065349 ENSMUST00000041606.13 0 chr4:15052717-15111193 0 26 CAATCTCGACACAGAAGAACTATGCG 1 89.9435429578 2.06626666244 1.29776189794e-11 chr4_-_15065323_15065349|89.9435429578|2.06626666244 2.00950367457153e-12 IN ENSMUST00000041606 Annotated NA Included I1 1 7.53601679437356e-09 -8.02584389569792e-08 -7.27352264131167e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_151076576_151076597 ENSMUST00000097774.8 585 chr4:151075285-151077863 585 21 CTGACATGGATAGCCTTGAAG 1 80.1822202422 5.97319999218 2.26751950549e-12 chr4_-_151076576_151076597|80.1822202422|5.97319999218 1.00952579629165e-12 IN ENSMUST00000097774 Annotated NA Neuronal N5 14 0.0335879943983779 0.0735478117306394 0.00718871008319909 TRUE TRUE TRUE 13.5 1 14.5 1 TRUE TRUE FALSE chr4_-_15140224_15140249 ENSMUST00000041606.13 0 chr4:15111302-15148817 0 25 ATTCTGAGGAGAGCAGACAAAAATG 1 90.3925973626 2.36017244778 3.32942562409e-11 chr4_-_15140224_15140249|90.3925973626|2.36017244778 5.18918241709798e-12 IN ENSMUST00000041606 Annotated NA Included I1 1 1.04269028118628e-08 -1.58888105694823e-07 -2.91240962243875e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_152123616_152123628 ENSMUST00000030785.14 0 chr4:152121265-152123713 0 12 GGAGCAGAAGCG 1 90.0442573741 2.79593751673 0.000144947959882 chr4_-_152123616_152123628|90.0442573741|2.79593751673 2.24657286552743e-05 IN ENSMUST00000030785 Annotated Alt3 Included I2 10 0.00162985941907951 0.00179468840663386 -0.00144516234116398 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_152125194_152125197 ENSMUST00000030785.14 4 chr4:152123790-152128068,chr4:152123793-152128068 3,1 3 GAG 2 67.5915716569 2.26071430317 0.22933846527 chr4_-_152123978_152123981|65.2998266794|-0.0242857138759,chr4_-_152125194_152125197|67.5915716569|2.26071430317 0.614465576640311 RESCUED ENSMUST00000030785 Novel NA Other O1 4 -0.00194920310380282 -0.0241410523281242 0.0339616974548687 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_152129611_152129638 ENSMUST00000105659.8 36 chr4:152128553-152130768 36 27 AAGTGAGAGTCCTGAGACACAGGAAGA 1 78.3050374851 2.3604516137 0 chr4_-_152129611_152129638|78.3050374851|2.3604516137 0 IN ENSMUST00000105659 Annotated NA Excluded E4 11 0.00260743958587712 -0.0290970371111108 0.0754993863718401 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_154985365_154985392 ENSMUST00000105631.8 35 chr4:154984965-154986718 35 27 TTAGGGATTGAGACCTGCGAGTGCCAG 1 78.6500974361 1.12161288699 0 chr4_-_154985365_154985392|78.6500974361|1.12161288699 0 IN ENSMUST00000105631 Annotated Alt5_3 Excluded E3 2 0.0248424199994474 -0.0114073081636091 -0.0357077101291694 TRUE FALSE TRUE FALSE FALSE FALSE chr4_-_155655251_155655270 ENSMUST00000128204.7 0 chr4:155655170-155655521 0 19 CACCGCACAGTGTGTGAGG 1 78.2902600528 2.90913045957 1.19325704873e-09 chr4_-_155655251_155655270|78.2902600528|2.90913045957 7.23016979620184e-10 IN ENSMUST00000128204 Annotated Alt5 Excluded E3 2 2.22612062418905e-05 -0.00375442046369675 -0.00540790336794496 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_156168545_156168569 ENSMUST00000105574.8 28 chr4:156167506-156168732 28 24 CGAGCTGACCAATGAGATCCCAGC 1 78.31401443 4.17064287247 0 chr4_-_156168545_156168569|78.31401443|4.17064287247 0 IN ENSMUST00000105574 Annotated Alt3 Excluded E2 3 0.00724984240734988 0.00111673490296236 0.0147637418321221 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_156169545_156169557 ENSMUST00000105574.8 2141 chr4:156169336-156169769 2141 12 AAATCCCGCAAG 1 72.8774384964 2.93918751925 9.70903737407e-08 chr4_-_156169545_156169557|72.8774384964|2.93918751925 9.22315629425796e-08 IN ENSMUST00000105574 Annotated NA Neuronal N2 8 0.0698484518060592 0.00817314854440624 -0.0426326271038676 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE TRUE FALSE chr4_-_156173295_156173325 ENSMUST00000071248.11 8 chr4:156173130-156173542 8 30 CTTGGGGCACCTGCTCCTAGGAATTGCCTG 1 76.6599087535 0.758382343961 0 chr4_-_156173295_156173325|76.6599087535|0.758382343961 0 IN ENSMUST00000071248 Novel Alt5 Excluded E1 6 0.00124299894254439 0.00103403590834876 -0.00148193399187357 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_19539151_19539166 ENSMUST00000029885.4 27 chr4:19536625-19540740 27 15 GGCCAGATTGTTCTA 1 78.2684736981 1.47863159015 1.49011610828e-08 chr4_-_19539151_19539166|78.2684736981|1.47863159015 9.05796371242218e-09 IN ENSMUST00000029885 Novel NA Excluded E1 6 0.00140337895215214 0.000181065820930275 0.00322583647304948 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_19539151_19539180 ENSMUST00000029885.4 148 chr4:19536625-19540740 148 29 TGGCATGCTTGCAGGGCCAGATTGTTCTA 1 82.6590974448 1.60987879607 0 chr4_-_19539151_19539180|82.6590974448|1.60987879607 0 IN ENSMUST00000029885 Missing in GENCODE NA Excluded E2 3 0.0111958302777154 0.00253866876671316 0.016289006255625 TRUE TRUE TRUE FALSE FALSE FALSE chr4_-_25279345_25279374 ENSMUST00000038705.7 41 chr4:25278701-25280622 41 29 GTCGAGTAAACATTGTTGACTTACAACAG 1 86.0398148913 3.51336361423 0 chr4_-_25279345_25279374|86.0398148913|3.51336361423 0 IN ENSMUST00000038705 Annotated NA Included I1 1 -0.000196405837991682 -0.000515773462150006 0.00183226729546529 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_43518643_43518657 ENSMUST00000030184.11 1 chr4:43518464-43519002 1 14 CCCAAGCGGACAAG 1 66.8552895422 4.43855557094 7.56699591875e-09 chr4_-_43518643_43518657|66.8552895422|4.43855557094 7.55919860040422e-09 IN ENSMUST00000030184 Novel Alt5 Excluded E1 6 0.00051830182143459 -0.000658464609841554 -0.000595861842280383 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_43534160_43534163 ENSMUST00000030187.13 57 chr4:43533968-43534389 57 3 CCG 1 82.4437543476 2.3565714189 0.024952728777 chr4_-_43534160_43534163|82.4437543476|2.3565714189 0.00751174560775392 IN ENSMUST00000030187 Missing in GENCODE NA Excluded E2 3 0.000699203946076893 -0.0130317467638846 0.00245330087960749 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_48466274_48466299 ENSMUST00000155905.7 61 chr4:48462881-48467663 61 25 TATGCCATTGGATACATTCTATGAG 1 78.7075498834 -0.122586201941 0 chr4_-_48466274_48466299|78.7075498834|-0.122586201941 0 IN ENSMUST00000155905 Novel NA Excluded E1 6 0.00255591638458786 0.000749723170633831 0.00346653265989864 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_56922386_56922410 ENSMUST00000132816.7 243 chr4:56916806-56923338 243 24 CTCTGGCACTGGCTAAATAAGAAG 1 83.3647888935 4.16482139911 0 chr4_-_56922386_56922410|83.3647888935|4.16482139911 0 IN ENSMUST00000132816 Annotated NA Neuro-Muscular NM2 9 0.0586486037588321 -0.0828343814953864 0.0573333758866497 TRUE TRUE TRUE 13.5 1 14.5 1 TRUE TRUE FALSE chr4_-_59517585_59517596 ENSMUST00000173699.7 1 chr4:59514420-59524394 1 11 GAAAAAGCCAG 1 80.6219524351 4.40780007839 9.27499851189e-06 chr4_-_59517585_59517596|80.6219524351|4.40780007839 3.8243890373435e-06 IN ENSMUST00000173699 Novel Alt5 Excluded E1 6 0.000125817463266061 -0.00026861276022375 0.00147191277108873 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_6401247_6401268 ENSMUST00000029910.11 54 chr4:6398959-6406786 54 21 ATGACTTATCTACTGGAGAAG 1 85.6675478919 0.158319996595 6.9295680305e-12 chr4_-_6401247_6401268|85.6675478919|0.158319996595 1.3301582058034e-12 IN ENSMUST00000029910 Novel NA Excluded E1 6 4.5637362849408e-05 0.00111727421841961 0.00192540273649051 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_70246947_70246974 ENSMUST00000144099.7 56 chr4:70245497-70250352 56 27 GGGCTGACGGGACCACAGGCATACCAG 1 83.5462958139 -0.32996773873 0 chr4_-_70246947_70246974|83.5462958139|-0.32996773873 0 IN ENSMUST00000144099 Annotated NA Excluded E3 2 0.00226575983581671 0.000192026789827264 0.00282214057469565 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_72157462_72157479 ENSMUST00000072695.12 0 chr4:72152897-72158212,chr4:72145420-72158212 0 17 ACAGAGAGCCTGGCACG 1 74.6422022821 3.81923814331 3.08151309358e-07 chr4_-_72157462_72157479|74.6422022821|3.81923814331 2.71990305833469e-07 IN ENSMUST00000072695 Annotated NA Included I1 1 -3.80508889676311e-21 7.24728873128398e-20 1.9791546747203e-20 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_76054588_76054600 ENSMUST00000173376.7 2712 chr4:76050439-76059668 2712 12 TAAACCTGACAG 1 74.6165834625 5.49818739668 2.1450664196e-06 chr4_-_76054588_76054600|74.6165834625|5.49818739668 1.89615538559451e-06 IN ENSMUST00000173376 Annotated NA Neuronal N4 13 0.0490485605755905 0.0266138867042702 -0.0203184142638919 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr4_-_76054588_76054603 ENSMUST00000173376.7 337 chr4:76050439-76059668 337 15 CAGTAAACCTGACAG 1 75.2802904304 5.37731570005 3.35057842582e-08 chr4_-_76054588_76054603|75.2802904304|5.37731570005 2.83668908362955e-08 IN ENSMUST00000173376 Annotated NA Neuronal N6 15 0.0135347773906221 0.00609310943012195 -0.00142955879957542 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_76085888_76085891 ENSMUST00000173376.7 201 chr4:76085558-76102954 201 3 CAG 2 74.7461276826 2.63928572195 0.654019451214 chr4_-_76085888_76085891|74.7461276826|2.63928572195,chr4_-_76090897_76090900|66.5680963591|0.25685712908 0.78686344696582 RESCUED ENSMUST00000173376 Novel NA Excluded E4 11 0.00101606800012305 -0.00549135149613905 0.00811008526584367 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_76095519_76095546 ENSMUST00000174180.7 1181 chr4:76091539-76099411 1181 27 TGGGAATTTGATGATACTACTGAACAT 1 75.730933064 5.12219351722 0 chr4_-_76095519_76095546|75.730933064|5.12219351722 0 IN ENSMUST00000174180 Annotated NA Included I3 5 -0.00995874490207814 -0.0266956558762086 0.0435602420394073 TRUE FALSE TRUE FALSE FALSE FALSE chr4_-_76135544_76135554 ENSMUST00000174180.7 5 chr4:76133332-76136810 5 10 CTGCGAGAAG 1 75.5202510727 5.72242850917 1.29043223565e-05 chr4_-_76135544_76135554|75.5202510727|5.72242850917 1.07285234252075e-05 IN ENSMUST00000174180 Novel NA Neuronal N4 13 0.0286527060039768 0.00722936049016745 0.0215993426186512 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr4_-_76135544_76135556 ENSMUST00000174180.7 2315 chr4:76133332-76136810 2315 12 AGCTGCGAGAAG 1 77.7033059637 5.74118743837 8.06059363589e-07 chr4_-_76135544_76135556|77.7033059637|5.74118743837 5.30671036447217e-07 IN ENSMUST00000174180 Annotated NA Neuronal N1 18 0.0735655712255754 0.00521210478317635 0.0318204677710731 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr4_-_76138555_76138573 ENSMUST00000174180.7 271 chr4:76136921-76140513 271 18 GTGGTACACCAATAAGAG 1 85.9884391451 6.01490914822 2.02931005333e-10 chr4_-_76138555_76138573|85.9884391451|6.01490914822 3.76955133774004e-11 IN ENSMUST00000174180 Annotated NA Neuronal N3 17 0.0584001023978949 0.0244995963919005 0.0180688418860161 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr4_-_76139293_76139302 ENSMUST00000174180.7 562 chr4:76136921-76140513 562 9 AATCTATTG 1 82.7879511308 5.80338457914 5.3329834224e-05 chr4_-_76139293_76139302|82.7879511308|5.80338457914 1.51723264266712e-05 IN ENSMUST00000174180 Annotated NA Neuronal N6 15 0.0129431785089444 -0.00818446860074121 0.0425343310863535 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_76534733_76534757 ENSMUST00000107287.8 58 chr4:76325345-76594266 58 24 ATCCCATCACTCTACATTGTGACA 1 78.4417632612 -0.00942857390536 0 chr4_-_76534733_76534757|78.4417632612|-0.00942857390536 0 IN ENSMUST00000107287 Novel NA Excluded E2 3 -0.000109615917146504 0.000754234598421478 0.00457383058682541 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_77815334_77815343 ENSMUST00000107287.8 163 chr4:77632379-77925509 163 9 AATTTCCAG 1 79.7770147605 -0.213769220675 0.00435825880359 chr4_-_77815334_77815343|79.7770147605|-0.213769220675 0.00208028306106134 IN ENSMUST00000107287 Novel NA Excluded E1 6 -0.000362996329049722 0.00124620706155734 0.00518721206301021 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_94970511_94970535 ENSMUST00000075872.3 0 chr4:94967968-94970623,chr4:94969058-94970623,chr4:94969053-94970623 0 24 CCTGCAGAAGTCATCAAAAGCCAT 1 82.5117029151 1.68471427847 5.46052092432e-12 chr4_-_94970511_94970535|82.5117029151|1.68471427847 1.62536650805123e-12 IN ENSMUST00000075872 Annotated Alt3 Included I2 10 0.00423515545099731 -0.00148583473124653 0.00730611265934659 TRUE FALSE FALSE FALSE FALSE FALSE chr4_-_98953865_98953880 ENSMUST00000030286.13 8 chr4:98946754-98954785,chr4:98946763-98955315 7,1 15 AGCACTGGCTGGGAG 1 85.6792179203 5.81899999317 2.91474857583e-08 chr4_-_98953865_98953880|85.6792179203|5.81899999317 5.58796764416059e-09 IN ENSMUST00000030286 Annotated Alt5 Neuro-Muscular NM4 16 0.040218823874108 -0.00964827600628248 -0.00516758463230188 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr5_+_100799592_100799613 ENSMUST00000198453.1 2 chr5:100798860+100801907 2 21 GTAACCAGCAATGAGGACCTG 1 78.5420978837 1.33884001553 2.68407518433e-12 chr5_+_100799592_100799613|78.5420978837|1.33884001553 1.56596957623378e-12 IN ENSMUST00000198453 Novel Alt5 Excluded E2 3 0.00118476943309629 0.000149422257850935 0.00258732570176153 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_100803052_100803063 ENSMUST00000112898.7 3 chr5:100801991+100803969 3 11 CTTTTGTCCCA 1 62.9041217746 3.53560003626 1.82818454364e-06 chr5_+_100803052_100803063|62.9041217746|3.53560003626 1.8281100432338e-06 IN ENSMUST00000112898 Novel Alt3 Excluded E1 6 0.00028271462643981 8.22481474768413e-05 0.000873221886281804 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_105811723_105811743 ENSMUST00000149831.7 0 chr5:105732374+105830366,chr5:105732374+105813326 0 20 GAATGTTTACCCTTGCGGAA 1 77.1742186424 5.3115416492 7.36035845605e-08 chr5_+_105811723_105811743|77.1742186424|5.3115416492 5.18598897158995e-08 IN ENSMUST00000149831 Annotated NA Included I1 1 -0.000731850263932807 -0.000289730483588765 0.00286949759213795 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_107601955_107601981 ENSMUST00000112651.7 141 chr5:107601845+107603525,chr5:107601859+107603525 55,86 26 ACAAAGGACCAGAGGAAACAGAACAG 1 84.8328991772 -0.0915000031392 0 chr5_+_107601955_107601981|84.8328991772|-0.0915000031392 0 IN ENSMUST00000112651 Novel NA Excluded E2 3 0.001605482729634 0.00104270035291883 -0.000306047779099938 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_108080824_108080841 ENSMUST00000172045.7 44 chr5:108065965+108080921 44 17 AGACTCTACAGGAGCAG 1 82.2777153938 4.10928573495 3.39582584274e-09 chr5_+_108080824_108080841|82.2777153938|4.10928573495 1.05103892256153e-09 IN ENSMUST00000172045 Annotated Alt3 Excluded E2 3 -0.00157735180970051 -0.000520465815787261 -0.0015100653046242 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_111281879_111281903 ENSMUST00000040111.9 0 chr5:111280751+111282770 0 24 GCTGTTAAAAATATGGTGGGAATG 1 80.3038578455 5.33671436991 7.07345293449e-12 chr5_+_111281879_111281903|80.3038578455|5.33671436991 3.08320036168652e-12 IN ENSMUST00000040111 Annotated NA Included I1 1 -2.32610116733681e-16 4.46309587653278e-16 5.90525313051165e-16 TRUE TRUE TRUE 11.5 1 10.5 1 FALSE FALSE FALSE chr5_+_111347119_111347127 ENSMUST00000086635.8 0 chr5:111346574+111347780 0 8 TTGTAACG 1 80.759299692 3.4433333377 0.0180530762214 chr5_+_111347119_111347127|80.759299692|3.4433333377 0.00726687500727075 IN ENSMUST00000086635 Annotated NA Included I1 1 4.60031352651535e-118 8.59878196894421e-119 9.02591067371607e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_114946609_114946618 ENSMUST00000031538.8 436 chr5:114946364+114947162 436 9 CCAACACAG 1 78.4724575074 0.306846148693 1.16973432098e-05 chr5_+_114946609_114946618|78.4724575074|0.306846148693 6.89706288903302e-06 IN ENSMUST00000031538 Missing in GENCODE NA Excluded E1 6 0.0029876324842212 0.00181751549834779 -0.000152558915731635 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_115329128_115329142 ENSMUST00000209604.1 107 chr5:115328704+115330497 107 14 CTGGTGTTAAAGAC 1 77.1781546875 0.0835555584894 2.58296491973e-08 chr5_+_115329128_115329142|77.1781546875|0.0835555584894 1.81904351581608e-08 IN ENSMUST00000209604 Novel NA Excluded E1 6 8.78313358894206e-05 -0.000249810906494187 0.00182452523719638 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_117349883_117349899 ENSMUST00000111967.7 0 chr5:117348405+117351564 0 16 GAGGGAGCACATTCAG 1 95.3478709432 1.69530000985 7.30855123421e-07 chr5_+_117349883_117349899|95.3478709432|1.69530000985 1.74211689740744e-07 IN ENSMUST00000111967 Annotated NA Included I1 1 2.25173898645636e-09 7.83772987635756e-09 -2.45258628646609e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_122356793_122356805 ENSMUST00000155671.7 1574 chr5:122354476+122359945,chr5:122354476+122360012,chr5:122354476+122360028,chr5:122354503+122360012 20,1499,43,12 12 GCTGGGCACAGA 1 77.5781811626 4.93756246567 1.26962469404e-06 chr5_+_122356793_122356805|77.5781811626|4.93756246567 8.49911383049573e-07 IN ENSMUST00000155671 Annotated NA Excluded E4 11 -0.0194651846170615 0.0149162616008804 -0.058506027390352 TRUE TRUE TRUE FALSE FALSE FALSE chr5_+_122861893_122861907 ENSMUST00000198602.1 1 chr5:122850298+122863986 1 14 TCTTTAGAAAGAAG 1 86.961954292 4.53944444325 1.9892466141e-07 chr5_+_122861893_122861907|86.961954292|4.53944444325 3.3982875513594e-08 IN ENSMUST00000198602 Novel Alt5 Excluded E1 6 -0.000243752370747276 0.000226623345494494 -0.000930600769060256 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_123915190_123915210 ENSMUST00000023869.14 0 chr5:123908214+123917199 0 20 TCTGTTCATTACCAACAGAG 1 82.5126351363 4.1113750441 8.14998202259e-09 chr5_+_123915190_123915210|82.5126351363|4.1113750441 2.42559849983337e-09 IN ENSMUST00000023869 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_124543486_124543507 ENSMUST00000060226.10 153 chr5:124543164+124546895 153 21 GTGGTGGAGACTCCTGGGATG 1 83.4540749685 3.87723989725 3.29158922341e-12 chr5_+_124543486_124543507|83.4540749685|3.87723989725 8.43325409505269e-13 IN ENSMUST00000060226 Annotated NA Included I1 1 -1.37089119994466e-05 2.96564926674489e-06 -5.0796241561966e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_124589370_124589400 ENSMUST00000031333.3 0 chr5:124588687+124590349 0 30 ACATTCACAGAGTGAACAAGGCAGTTAAAG 1 80.7961396927 3.05444118292 0 chr5_+_124589370_124589400|80.7961396927|3.05444118292 0 IN ENSMUST00000031333 Annotated NA Included I1 1 -1.93884139376011e-115 -1.29569817609849e-116 -2.97321211718252e-115 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_124590349_124590378 ENSMUST00000031333.3 0 chr5:124589400+124590868 0 29 ATAATCAGGAGATGAAATCAAGGATTTTG 1 80.7870591677 3.41448483853 0 chr5_+_124590349_124590378|80.7870591677|3.41448483853 0 IN ENSMUST00000031333 Annotated NA Included I1 1 5.07141030520836e-116 6.34922053877548e-117 8.15700920229105e-116 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_124716487_124716515 ENSMUST00000199526.1 0 chr5:124714232+124717885 0 28 CAAGACACACGGGCTCTACCCAGGGCAG 1 83.3355447692 2.14731243555 0 chr5_+_124716487_124716515|83.3355447692|2.14731243555 0 IN ENSMUST00000199526 Annotated Alt5 Excluded E3 2 -0.00114224215007208 -0.000769426952250376 -0.00145870345762557 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_129716585_129716611 ENSMUST00000042191.11 10 chr5:129715763+129716726,chr5:129715858+129716726 5,5 26 GCAAGCCTGGGCTACCGTGGAGAAAG 1 78.2222079051 0.326633333166 0 chr5_+_129716585_129716611|78.2222079051|0.326633333166 0 IN ENSMUST00000042191 Novel NA Excluded E2 3 0.000674947101335602 0.00244562953107026 -0.00427382214704765 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_130614246_130614276 ENSMUST00000086029.9 24 chr5:130506188+130617842 24 30 AAGAGGCTGGAGATGGGGCAGATTAATAAG 1 77.1996648285 0.356000001374 0 chr5_+_130614246_130614276|77.1996648285|0.356000001374 0 IN ENSMUST00000086029 Novel NA Excluded E1 6 -0.000169416571128721 0.000244311081431496 0.000241356440288349 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_134197247_134197276 ENSMUST00000123941.7 0 chr5:134196605+134201403 0 29 GCCCTTCCTAGGTGCAGAGAGCCAGCTGG 1 87.802299914 1.2202121139 0 chr5_+_134197247_134197276|87.802299914|1.2202121139 0 IN ENSMUST00000123941 Annotated NA Included I1 1 -1.02160289455393e-21 2.70314786067506e-21 2.40744888678411e-21 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_134214640_134214669 ENSMUST00000123941.7 0 chr5:134214150+134221792,chr5:134214150+134216245,chr5:134214150+134216135,chr5:134214150+134214950 0 29 ACCACTTCCTGGACTTGAACTCAGTAATG 1 84.5978758546 1.54396967703 0 chr5_+_134214640_134214669|84.5978758546|1.54396967703 0 IN ENSMUST00000123941 Annotated NA Included I1 1 -2.30047123563478e-12 1.39039505684732e-11 5.69551521741626e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_135045847_135045858 ENSMUST00000150838.1 88 chr5:135045734+135048710,chr5:135045734+135048910 1,87 11 AGTATCTTCAG 1 69.4324323139 0.9464000235 2.75764234237e-06 chr5_+_135045847_135045858|69.4324323139|0.9464000235 2.74002695943576e-06 IN ENSMUST00000150838 Novel Alt5 Excluded E1 6 0.00110270126912521 0.00100107041741578 -0.00116048338195379 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_135852891_135852921 ENSMUST00000013615.13 0 chr5:135852471+135854367 0 30 CAAAAAGAGGAGACTAGAGTCAGAATGCAG 1 79.2015580662 2.14608822229 0 chr5_+_135852891_135852921|79.2015580662|2.14608822229 0 IN ENSMUST00000013615 Annotated NA Included I1 1 -4.91501803129558e-07 2.44306866818169e-06 1.27222426506314e-06 TRUE TRUE FALSE 15.5 1 FALSE FALSE FALSE chr5_+_135867126_135867146 ENSMUST00000144211.1 63 chr5:135857215+135868172 63 20 GAGGAAGTGCCACTTTATTG 1 80.4446232468 5.47679172705 3.88418186503e-11 chr5_+_135867126_135867146|80.4446232468|5.47679172705 1.65202296287248e-11 IN ENSMUST00000144211 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr5_+_137536138_137536168 ENSMUST00000163194.1 0 chr5:137532543+137538519 0 30 CAGGGAACACACTGCATCTCAAGGAGGAAG 1 86.2834008382 0.129411761156 0 chr5_+_137536138_137536168|86.2834008382|0.129411761156 0 IN ENSMUST00000163194 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr5_+_138637777_138637791 ENSMUST00000032590.13 62 chr5:138636290+138639494 62 14 ACTCCATGATCAAG 1 70.5054189155 None 4.63624008074e-08 chr5_+_138637777_138637791|70.5054189155|None 4.57715106927381e-08 IN ENSMUST00000032590 Missing in GENCODE NA Excluded E1 6 0.000372243687861962 -5.11182477847277e-05 0.00131893422991556 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_139226577_139226604 ENSMUST00000058716.13 0 chr5:139225447+139226678,chr5:139225447+139226705 0 27 GTCTCGATGATGATGGTGACCTTAAAG 1 85.5308911693 2.44503231695 0 chr5_+_139226577_139226604|85.5308911693|2.44503231695 0 IN ENSMUST00000058716 Annotated NA Included I1 1 -1.09102427625488e-118 -2.03931315121628e-119 -2.14061228730894e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_143703372_143703375 ENSMUST00000116456.9 110 chr5:143702925+143707083 110 3 GAG 1 80.7541897387 4.42585713523 0.223815217796 chr5_+_143703372_143703375|80.7541897387|4.42585713523 0.0901727137874822 IN ENSMUST00000116456 Missing in GENCODE NA Neuronal N6 15 0.0187947802424833 0.00636829285874391 0.00473818060337692 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr5_+_144810331_144810352 ENSMUST00000100467.9 352 chr5:144807391+144811894,chr5:144810204+144811894 21,331 21 CCTGCCATGGAAGGGGTAGAG 1 84.6939291649 5.18843996942 1.4788170688e-12 chr5_+_144810331_144810352|84.6939291649|5.18843996942 3.1818991885757e-13 IN ENSMUST00000100467 Annotated NA Neuronal N1 18 0.0626852635109686 0.00471154933663594 0.0295325775112186 TRUE TRUE TRUE 13.5 1 14.5 1 TRUE FALSE FALSE chr5_+_145098081_145098102 ENSMUST00000031625.14 5 chr5:145097323+145101056 5 21 TTTTTTTTTTTTTTTAAATAG 1 80.464441579 0.0575200027227 3.29336558025e-12 chr5_+_145098081_145098102|80.464441579|0.0575200027227 1.39588340886121e-12 IN ENSMUST00000031625 Novel NA Excluded E1 6 2.2347002282089e-06 -1.01578962490359e-06 1.21965174721212e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_146466000_146466019 ENSMUST00000016143.8 1 chr5:146461140+146466797 1 19 ACGACACCAGGCCAAGAGG 1 63.0119486934 1.64291304803 8.00639554654e-11 chr5_+_146466000_146466019|63.0119486934|1.64291304803 8.00604027517693e-11 IN ENSMUST00000016143 Novel NA Excluded E3 2 -0.0109647581782842 0.0325992701393503 0.0330054065909421 TRUE TRUE TRUE 10.5 -1 10.5 -1 FALSE TRUE FALSE chr5_+_14778538_14778565 ENSMUST00000182426.2 760 chr5:14775444+14788397 760 27 TCAAGTCATGGTTGTCCAGAATGCAAG 1 69.7519424987 5.90154834909 0 chr5_+_14778538_14778565|69.7519424987|5.90154834909 0 IN ENSMUST00000182426 Annotated NA Included I2 10 0.00246058918166214 -0.0128081077856358 0.00922579379310971 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_149447759_149447767 ENSMUST00000200985.3 232 chr5:149439787+149453293,chr5:149445854+149453293 1,231 8 AGACTTAG 1 79.8427190917 0.157583331068 0.000442585739963 chr5_+_149447759_149447767|79.8427190917|0.157583331068 0.000208899896071424 IN ENSMUST00000200985 Annotated NA FALSE TRUE TRUE FALSE FALSE FALSE chr5_+_150461388_150461397 ENSMUST00000087204.8 507 chr5:150457915+150466243 507 9 GAACTTCAG 1 83.2136309522 3.86130769895 0.000123895480571 chr5_+_150461388_150461397|83.2136309522|3.86130769895 3.29408650774354e-05 IN ENSMUST00000087204 Annotated NA Neuronal N5 14 0.0524569281300644 0.0706442024907717 -0.0430499712346891 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr5_+_150488960_150488978 ENSMUST00000087204.8 1270 chr5:150481576+150491077 1270 18 CAAATGGAATCTCTTGCA 1 73.7988873629 5.81931814822 5.38818767382e-10 chr5_+_150488960_150488978|73.7988873629|5.81931814822 4.95910201792071e-10 IN ENSMUST00000087204 Annotated NA Neuronal N5 14 0.0551439497996539 0.0555501085895733 -0.0440595701844207 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr5_+_19999441_19999448 ENSMUST00000101558.9 18 chr5:19908013+20065551 18 7 ATTTGAC 1 74.4273425588 0.108363634822 0.0368608372194 chr5_+_19999441_19999448|74.4273425588|0.108363634822 0.0329281098929676 IN ENSMUST00000101558 Novel Alt3 Excluded E1 6 -0.00119005022328312 0.00405262843555766 0.00158071180089879 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_23788952_23788968 ENSMUST00000030852.12 9 chr5:23788335+23793557,chr5:23788335+23794302 6,3 16 GTGGAGCGTAACCCAG 1 76.6746516591 -0.0659500040114 4.73119143862e-09 chr5_+_23788952_23788968|76.6746516591|-0.0659500040114 3.53097240335387e-09 IN ENSMUST00000030852 Novel NA Excluded E1 6 0.000230362192395237 -0.000639794747796527 0.000582817684008238 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_29196622_29196645 ENSMUST00000160051.1 0 chr5:29196397+29197925,chr5:29196112+29197925 0 23 TTTGCTAATACTATGGGACTATG 1 81.4464848235 0.0708888860212 2.13304929275e-11 chr5_+_29196622_29196645|81.4464848235|0.0708888860212 7.61313234676209e-12 IN ENSMUST00000160051 Annotated Alt5 Excluded E4 11 -0.00549451774539679 0.00126726714970606 -0.00921606279469523 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_29196869_29196880 ENSMUST00000160383.7 51 chr5:29196645+29197925 51 11 CCAAGGCCACG 1 81.387375094 -0.294333333025 1.17812236344e-06 chr5_+_29196869_29196880|81.387375094|-0.294333333025 4.24841715029878e-07 IN ENSMUST00000160383 Novel NA Excluded E1 6 0.00104636478738864 -0.00290180926789442 0.000383956636449214 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_29198573_29198592 ENSMUST00000198669.1 61 chr5:29198020+29198667 61 19 GATCGTTCATCTAACAAAG 1 82.1495177154 0.992521728834 8.86757334229e-12 chr5_+_29198573_29198592|82.1495177154|0.992521728834 2.80453438250561e-12 IN ENSMUST00000198669 Novel Alt3 Excluded E2 3 0.000445111159683855 -0.00169535492290192 0.000427890409552792 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_30871837_30871855 ENSMUST00000114716.3 17 chr5:30871570+30872071 17 18 AGCTGGATAAAACACCAG 1 74.5905157956 3.25659090314 2.72279976343e-11 chr5_+_30871837_30871855|74.5905157956|3.25659090314 2.41044961768466e-11 IN ENSMUST00000114716 Novel Alt5 Excluded E1 6 0.000573116884626119 -5.64044852657477e-05 0.000278654253820179 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_30919930_30919948 ENSMUST00000031055.7 0 chr5:30919372+30920079 0 18 GTCCTCAAGGGGAGCAGG 1 88.3392593254 2.3221363598 9.96806193143e-09 chr5_+_30919930_30919948|88.3392593254|2.3221363598 1.57858548455181e-09 IN ENSMUST00000031055 Annotated NA Included I1 1 5.47313497559988e-55 -5.47199372601277e-56 2.42104128559365e-54 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_31049461_31049483 ENSMUST00000200942.1 0 chr5:31048756+31052196 0 22 ATATGCACCCTGTGTCCGGGAG 1 86.816251571 1.3668461485 1.94063431991e-10 chr5_+_31049461_31049483|86.816251571|1.3668461485 3.35185212918532e-11 IN ENSMUST00000200942 Annotated Alt3 Excluded E1 6 2.47563325142195e-05 -0.000251920401691834 -0.00144830427775524 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_31076673_31076703 ENSMUST00000202795.3 0 chr5:31076292+31077092 0 30 GGGAAGGTCATGGCCTCCATGTTCTACGAG 1 83.6504283746 4.63599994077 0 chr5_+_31076673_31076703|83.6504283746|4.63599994077 0 IN ENSMUST00000202795 Annotated Alt3 Excluded E2 3 8.97391710774783e-05 0.000424670918170483 -0.00038360456466294 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_31136752_31136775 ENSMUST00000013771.14 0 chr5:31136276+31136887 0 23 CAGGCAAAGGAGCTGATCAACAA 1 84.4823494792 2.35700001154 8.29913915368e-12 chr5_+_31136752_31136775|84.4823494792|2.35700001154 1.83597581582262e-12 IN ENSMUST00000013771 Annotated NA Included I1 1 -6.32955338193377e-07 7.73940216604729e-08 7.4013691049189e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_31246321_31246345 ENSMUST00000031034.11 17 chr5:31245845+31247341 17 24 TCTTTCATAGGATTTTTGCTAATG 1 80.3202580333 4.6137857352 0 chr5_+_31246321_31246345|80.3202580333|4.6137857352 0 IN ENSMUST00000031034 Annotated NA Neuronal N4 13 0.0383342725207272 0.0154870886142886 0.00881104104599779 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr5_+_31614602_31614621 ENSMUST00000200694.3 1124 chr5:31597021+31616380,chr5:31614022+31616380,chr5:31614022+31629615 101,1022,1 19 TTGCCAAGAGCAAGTCAAA 1 75.6511418346 3.72721742677 3.318234576e-11 chr5_+_31614602_31614621|75.6511418346|3.72721742677 2.7299051907903e-11 IN ENSMUST00000200694 Annotated Alt5 Included I2 10 0.000450455396184884 -0.0012080855067011 0.000200316497462068 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_32659784_32659813 ENSMUST00000202543.3 13 chr5:32659111+32660751 13 29 TCTAAGACAAGAATTCAGATAATATACAG 1 87.544730649 0.1319696945 0 chr5_+_32659784_32659813|87.544730649|0.1319696945 0 IN ENSMUST00000202543 Novel NA Excluded E1 6 0.00088865295863307 -5.21191841458763e-06 0.00357898015014507 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_33019598_33019621 ENSMUST00000019109.7 1 chr5:33019154+33026541 1 23 ACCCCTTTCCAGCAGTCCTGGGC 1 64.7752623573 0.494999996869 0 chr5_+_33019598_33019621|64.7752623573|0.494999996869 0 IN ENSMUST00000019109 Novel NA Excluded E1 6 5.58663910752792e-06 -8.79855221262156e-06 -2.88083229331234e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_34349549_34349559 ENSMUST00000182709.7 0 chr5:34348743+34349911 0 10 ATTGTTGAAG 1 85.7213059811 1.29842858549 0.0010999311195 chr5_+_34349549_34349559|85.7213059811|1.29842858549 0.000209938776673968 IN ENSMUST00000182709 Annotated NA Included I1 1 -2.05986608954726e-139 -6.46349087261979e-140 -4.21106890021599e-139 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_34413726_34413729 ENSMUST00000180376.7 108 chr5:34410823+34420000 108 3 CAG 1 71.6405190704 None 0.428624955223 chr5_+_34413726_34413729|71.6405190704|None 0.417805272708288 RESCUED ENSMUST00000180376 Novel NA Other O1 4 0.0112611655041728 0.00790398684199687 -0.0088344960300589 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_34999207_34999229 ENSMUST00000030984.13 0 chr5:34989868+35019342,chr5:34989212+35019342,chr5:34975333+35019342 0 22 TCTGCAACTGTGTCTGATGGTG 1 89.4059275389 2.32588460038 1.67392499861e-09 chr5_+_34999207_34999229|89.4059275389|2.32588460038 2.59075205732984e-10 IN ENSMUST00000030984 Annotated Alt5 Included I2 10 0.000602178590040359 -0.00362662112799817 -0.0156368971764441 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_3559137_3559159 ENSMUST00000199666.4 0 chr5:3558693+3559605 0 22 TTCTTCAGATTCCGAAGATGAG 1 83.115644146 3.79903846091 5.03632691107e-11 chr5_+_3559137_3559159|83.115644146|3.79903846091 1.35975675163991e-11 IN ENSMUST00000199666 Annotated Alt5 Excluded E3 2 0.00157326947580687 -0.00365805602877633 0.00040486341664898 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_35874632_35874640 ENSMUST00000153529.1 24 chr5:35866766+35874832 24 8 AGTATAAG 1 90.594302409 3.25241665294 0.000479940614967 chr5_+_35874632_35874640|90.594302409|3.25241665294 7.51597323971342e-05 IN ENSMUST00000153529 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr5_+_3813271_3813280 ENSMUST00000199845.4 1 chr5:3813194+3818526 1 9 AAAGCATCT 1 71.1852153308 0.145923090669 7.92561360471e-05 chr5_+_3813271_3813280|71.1852153308|0.145923090669 7.77259030889654e-05 IN ENSMUST00000199845 Novel Alt3 Excluded E1 6 8.54859199872187e-05 -0.000573790719288372 -0.000444059599358418 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_43268868_43268892 ENSMUST00000114065.7 21 chr5:43261784+43277430 21 24 CAAGGAGTTATGGGCGAAGACGAG 1 82.6284722521 5.46121438486 0 chr5_+_43268868_43268892|82.6284722521|5.46121438486 0 IN ENSMUST00000114065 Annotated NA Neuro-Muscular NM3 19 0.0520164867750918 -0.015202872020355 -0.048253580425644 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr5_+_43716936_43716951 ENSMUST00000125866.3 76 chr5:43715845+43718552 76 15 TTCTGAAGGCTCGGG 1 77.3703648883 3.34378942063 9.77888703346e-09 chr5_+_43716936_43716951|77.3703648883|3.34378942063 6.72429700809829e-09 IN ENSMUST00000125866 Annotated NA Excluded E2 3 0.00636677115431337 -0.000781499220407472 0.0142546072337004 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_43728270_43728291 ENSMUST00000125866.3 68 chr5:43726372+43729856 68 21 ATGAGTGACATGCTTAAGAAG 1 71.7167885753 2.52423994303 3.07220915374e-12 chr5_+_43728270_43728291|71.7167885753|2.52423994303 2.9911628729451e-12 IN ENSMUST00000125866 Annotated NA Excluded E1 6 0.00219843571734098 -6.30204188577107e-05 0.00890908294203317 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_48191002_48191025 ENSMUST00000173107.7 1 chr5:48189592+48192192 1 23 ATGAGGAAGAAGGCAAGTTAAAT 1 80.5068058535 3.1600740752 0 chr5_+_48191002_48191025|80.5068058535|3.1600740752 0 IN ENSMUST00000173107 Novel NA Neuronal N6 15 0.0217163156109359 0.00457251031271743 0.034973053131093 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_48220966_48220990 ENSMUST00000173107.7 251 chr5:48220080+48224652 251 24 CTAAAGAACAGTATTTCATTCCAG 1 89.0527192841 5.41821421044 0 chr5_+_48220966_48220990|89.0527192841|5.41821421044 0 IN ENSMUST00000173107 Annotated NA Other O1 4 0.00294031952935688 -0.0501341461729397 -0.0546959522233759 TRUE TRUE FALSE FALSE TRUE TRUE chr5_+_48263640_48263667 ENSMUST00000173107.7 115 chr5:48259683+48275581 115 27 CTGCTAATCTGAATGAGGTGGAAAAAG 1 83.554892965 5.10570967582 0 chr5_+_48263640_48263667|83.554892965|5.10570967582 0 IN ENSMUST00000173107 Annotated NA Neuronal N4 13 0.044894244487665 0.0239886921413538 -0.0111131243355561 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr5_+_52841904_52841931 ENSMUST00000031072.13 0 chr5:52841790+52842023 0 27 TTACAACAGCACCTCAAAAATATTTAG 1 89.8182455231 4.30438707529 0 chr5_+_52841904_52841931|89.8182455231|4.30438707529 0 IN ENSMUST00000031072 Annotated NA Included I1 1 -1.73054576912068e-139 -5.43014268748931e-140 -3.53782583524454e-139 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_54110115_54110139 ENSMUST00000117661.8 161 chr5:54109870+54110536 161 24 GTCGCTGCCTCCTATCTCCTGCAG 1 90.2133692052 1.75878570814 0 chr5_+_54110115_54110139|90.2133692052|1.75878570814 0 IN ENSMUST00000117661 Annotated NA Excluded E3 2 0.000764025306316714 -0.0102361922031364 0.00803725557591046 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_65392219_65392243 ENSMUST00000031101.9 2 chr5:65391673+65392334 2 24 ATATTTGGAAGATATGCGTTCACG 1 77.4486714691 1.38621426773 0 chr5_+_65392219_65392243|77.4486714691|1.38621426773 0 IN ENSMUST00000031101 Annotated Alt3 Excluded E2 3 0.000966421126673502 0.00074286977679629 0.00330990864591697 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_65581729_65581755 ENSMUST00000142407.7 22 chr5:65581468+65591875 22 26 AAAGCTATTTATAATGGACTAAAAAT 1 82.7698246074 0.500500012531 0 chr5_+_65581729_65581755|82.7698246074|0.500500012531 0 IN ENSMUST00000142407 Novel NA Excluded E1 6 5.34582163700577e-05 2.18542882276045e-05 3.29966865563459e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_65802380_65802391 ENSMUST00000201489.3 54 chr5:65798167+65803420 54 11 ACAAGATCGAG 1 75.143012227 1.62140000661 4.87825574935e-06 chr5_+_65802380_65802391|75.143012227|1.62140000661 4.17057376878027e-06 IN ENSMUST00000201489 Missing in GENCODE NA Excluded E1 6 0.0039461121436711 0.000490340271002596 0.00852090838476785 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_66676435_66676447 ENSMUST00000031131.10 0 chr5:66676322+66676943 0 12 ATGCTGAACAAA 1 85.68677927 4.36100003123 3.60601523833e-05 chr5_+_66676435_66676447|85.68677927|4.36100003123 6.90769304312333e-06 IN ENSMUST00000031131 Annotated NA Included I1 1 -3.28855299112177e-46 3.60306135357755e-46 9.26034219888311e-46 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_74585045_74585072 ENSMUST00000080164.11 0 chr5:74572585+74587002 0 27 GTATTCCAATAACTGTACCACCTCCAG 1 83.6040590016 3.52838709662 0 chr5_+_74585045_74585072|83.6040590016|3.52838709662 0 IN ENSMUST00000080164 Annotated Alt5 Included I3 5 0.0149143225521653 0.000427216544315167 0.00726033153925562 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr5_+_76540746_76540767 ENSMUST00000087133.10 1944 chr5:76537857+76542050 1944 21 AACTGCCTAAAGTTACAGAAG 1 84.6723844972 4.35087995052 3.70192765331e-12 chr5_+_76540746_76540767|84.6723844972|4.35087995052 7.98916488520263e-13 IN ENSMUST00000087133 Annotated NA Neuronal N2 8 0.081078426234419 -0.0208524942850691 -0.00892416339610884 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE TRUE FALSE chr5_+_76843176_76843198 ENSMUST00000121160.7 127 chr5:76840923+76848816 127 22 TCGACTAAGCAGTATGTTCCTG 1 87.9066741617 2.87992305939 1.74682490695e-12 chr5_+_76843176_76843198|87.9066741617|2.87992305939 2.81774603649865e-13 IN ENSMUST00000121160 Novel NA Excluded E3 2 0.00406533030232161 -0.028092710855388 0.0705000736112321 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_77279898_77279914 ENSMUST00000080359.11 94 chr5:77275317+77280702 94 16 AGTGTGATCTAGCTGG 1 74.3330846374 2.23315000422 4.87943907501e-09 chr5_+_77279898_77279914|74.3330846374|2.23315000422 4.38053238127623e-09 IN ENSMUST00000080359 Novel NA Neuronal N4 13 0.0176517016265845 0.00770140651120191 0.0100197929506395 TRUE TRUE TRUE 14.5 1 14.5 1 FALSE FALSE FALSE chr5_+_81509723_81509738 ENSMUST00000149280.7 1187 chr5:81465304+81511983 1187 15 AAGTGGAACAAAAAG 1 81.4875716097 6.38036849624 1.69748076706e-07 chr5_+_81509723_81509738|81.4875716097|6.38036849624 6.01539168476606e-08 IN ENSMUST00000149280 Annotated NA Neuronal N2 8 0.0508773982478106 -0.0291873546601726 0.0100117963376171 TRUE TRUE TRUE 14.5 1 14.5 1 FALSE FALSE FALSE chr5_+_81509726_81509738 ENSMUST00000149280.7 9 chr5:81465304+81511983 9 12 TGGAACAAAAAG 1 74.9959284376 6.32125006616 1.08645173068e-05 chr5_+_81509726_81509738|74.9959284376|6.32125006616 9.38143141637759e-06 IN ENSMUST00000149280 Novel NA Neuro-Muscular NM4 16 0.0202694184136014 -0.022526061118788 0.0219481149474117 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_81757985_81758012 ENSMUST00000117253.7 211 chr5:81741146+81760626 211 27 CTATGAGGATAACAGACCCTTCATCAA 1 79.3616584257 5.02209669928 0 chr5_+_81757985_81758012|79.3616584257|5.02209669928 0 IN ENSMUST00000117253 Annotated NA Neuro-Muscular NM4 16 0.0264326046940771 -0.0221617485063496 0.0317793279090907 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_81792360_81792378 ENSMUST00000119788.7 195 chr5:81771680+81794263,chr5:81774431+81794263,chr5:81787564+81794263 126,11,58 18 AGCCCTACAGAGAGACAA 1 73.1377353716 5.70831820098 3.79543507734e-10 chr5_+_81792360_81792378|73.1377353716|5.70831820098 3.57796792194165e-10 IN ENSMUST00000119788 Annotated Alt3 Excluded E3 2 0.0144301273527227 -0.0133919102148628 -0.0187262100199043 TRUE FALSE FALSE FALSE FALSE TRUE chr5_+_87780002_87780026 ENSMUST00000076379.7 0 chr5:87778983+87781762,chr5:87778983+87780108,chr5:87778213+87780108 0 24 GAATCTTCCGAGGAAGTCAGTGAA 1 85.1402904863 0.155464288513 3.89732690564e-12 chr5_+_87780002_87780026|85.1402904863|0.155464288513 7.93698440304524e-13 IN ENSMUST00000076379 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr5_+_87785286_87785313 ENSMUST00000200322.4 0 chr5:87784588+87786589 0 27 GAAATCCTGAAGAAGATTATTGATATG 1 87.0913604052 0.178225803084 0 chr5_+_87785286_87785313|87.0913604052|0.178225803084 0 IN ENSMUST00000200322 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr5_+_87928269_87928299 ENSMUST00000001667.12 0 chr5:87927633+87929723 0 30 GCTGCAGAGATACAAAACCCAGATTCAAAC 1 77.5745558579 0.0905882304753 0 chr5_+_87928269_87928299|77.5745558579|0.0905882304753 0 IN ENSMUST00000001667 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr5_+_88647218_88647246 ENSMUST00000198965.4 0 chr5:88645601+88648255 0 28 GCTTCTGACTCACCCTGCAGAGGAACAG 1 90.0688749192 1.08543750556 0 chr5_+_88647218_88647246|90.0688749192|1.08543750556 0 IN ENSMUST00000198965 Annotated Alt5 Included I2 10 -0.0100308799805116 -0.00502640256072801 -0.000679999553461736 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_92183481_92183502 ENSMUST00000031355.9 155 chr5:92182109+92187234 155 21 GGTGATAAGATCGACAGACGG 1 81.6883789616 5.27943995655 4.52970994047e-12 chr5_+_92183481_92183502|81.6883789616|5.27943995655 1.55031543158657e-12 IN ENSMUST00000031355 Missing in GENCODE NA Excluded E2 3 -0.0115686797208371 -0.0256989821264956 0.0207575946670645 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_92404836_92404866 ENSMUST00000113083.8 0 chr5:92402028+92409269,chr5:92403656+92409269,chr5:92403627+92405943,chr5:92403656+92405942,chr5:92403627+92409269 0 30 ATATGGACAATCAGAAGCTTGAAGACTCTG 1 79.913326216 1.16297057644 0 chr5_+_92404836_92404866|79.913326216|1.16297057644 0 IN ENSMUST00000113083 Annotated NA Included I1 1 -1.5092456693117e-05 0.000392809279097181 0.000341918846750039 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_92412164_92412194 ENSMUST00000113083.8 31 chr5:92411195+92414241 31 30 ACAGAAGTCGAGGAAAGGCCAACAATCCTA 1 73.93644178 0.559470592286 0 chr5_+_92412164_92412194|73.93644178|0.559470592286 0 IN ENSMUST00000113083 Annotated Alt3 Muscular M1 22 -0.0229367138062496 -0.0665155488339858 -0.0117186056537213 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_92412168_92412194 ENSMUST00000113083.8 14 chr5:92411195+92414241 14 26 AAGTCGAGGAAAGGCCAACAATCCTA 1 70.8611821469 0.566633335873 0 chr5_+_92412168_92412194|70.8611821469|0.566633335873 0 IN ENSMUST00000113083 Novel NA Muscular M1 22 -0.0126898129240171 -0.0521659964393208 -0.0171373317460483 TRUE FALSE FALSE FALSE FALSE FALSE chr5_+_96239701_96239729 ENSMUST00000117766.7 3 chr5:96238945+96262061 3 28 TTACTTGCACGCCTACAGAAGATACTTG 1 78.1870942399 0.507875006359 0 chr5_+_96239701_96239729|78.1870942399|0.507875006359 0 IN ENSMUST00000117766 Novel NA Excluded E1 6 -0.000219926635263185 -0.000108861817557213 0.000281616755906338 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_107753881_107753891 ENSMUST00000112642.7 587 chr5:107748457-107764675 587 10 TGCACATCAG 1 73.0046694269 2.07985714717 6.03627822027e-05 chr5_-_107753881_107753891|73.0046694269|2.07985714717 5.713410452024e-05 IN ENSMUST00000112642 Novel NA Neuro-Muscular NM3 19 0.0361304424758746 -0.00833166251873486 -0.0528025631062836 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr5_-_107753881_107753894 ENSMUST00000112642.7 558 chr5:107748457-107764675 558 13 TAGTGCACATCAG 1 74.157205571 1.97482353799 9.43021869815e-07 chr5_-_107753881_107753894|74.157205571|1.97482353799 8.54072339628864e-07 IN ENSMUST00000112642 Novel NA Neuro-Muscular NM3 19 0.0337991343637086 -0.0124103182417811 -0.0404515700809231 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr5_-_107837420_107837446 ENSMUST00000112642.7 313 chr5:107821894-107842070 313 26 GCATTGGCAGAGATGAATTTAAGGAG 1 74.1236801345 0.856933323791 0 chr5_-_107837420_107837446|74.1236801345|0.856933323791 0 IN ENSMUST00000112642 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr5_-_110376252_110376282 ENSMUST00000069483.11 0 chr5:110376078-110376401,chr5:110374519-110376401 0 30 GTGTCCGATCCGTACCGGACAGCAGTCAGG 1 83.7584624537 2.01805884961 0 chr5_-_110376252_110376282|83.7584624537|2.01805884961 0 IN ENSMUST00000069483 Annotated NA Included I1 1 -1.02701250095342e-13 5.60103379790732e-13 3.08017923744386e-13 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_110396044_110396074 ENSMUST00000069483.11 0 chr5:110381646-110416029 0 30 TGCGACAGTGAGAGTGGCGTGGATGACAAG 1 81.2366314732 2.16797059213 0 chr5_-_110396044_110396074|81.2366314732|2.16797059213 0 IN ENSMUST00000069483 Annotated NA Included I1 1 4.96632528129938e-09 -2.54629488365168e-08 -9.10127931832897e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_114753147_114753153 ENSMUST00000112185.8 1014 chr5:114752327-114753278,chr5:114752330-114753278 516,498 6 ACGGCT 1 69.1430984747 3.0201000005 0.000894146947511 chr5_-_114753147_114753153|69.1430984747|3.0201000005 0.00088943952298981 IN ENSMUST00000112185 Annotated NA Neuronal N1 18 0.0677815561679077 0.0349851323893227 0.00131432478158443 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr5_-_115672143_115672152 ENSMUST00000055408.12 26 chr5:115670300-115673079 26 9 GTCCTTGAA 1 78.2188588142 3.70330764353 4.12157627764e-05 chr5_-_115672143_115672152|78.2188588142|3.70330764353 2.52369542879105e-05 IN ENSMUST00000055408 Novel NA Excluded E3 2 0.00515365098977741 -0.0523821225334905 0.026130597155313 TRUE TRUE TRUE FALSE FALSE FALSE chr5_-_115672143_115672155 ENSMUST00000055408.12 518 chr5:115670300-115673079 518 12 CAGGTCCTTGAA 1 76.0610084223 3.91587494034 6.43310861581e-07 chr5_-_115672143_115672155|76.0610084223|3.91587494034 5.10673767828429e-07 IN ENSMUST00000055408 Annotated NA Neuro-Muscular NM1 12 0.0440284881634435 -0.164953683580394 0.00645500335976661 TRUE TRUE TRUE FALSE FALSE FALSE chr5_-_116454672_116454688 ENSMUST00000076124.6 130 chr5:116453713-116467431 130 16 GAGGAGTCCTTGCTTG 1 83.4255904318 5.02110000849 1.24582583139e-08 chr5_-_116454672_116454688|83.4255904318|5.02110000849 3.2058166121729e-09 IN ENSMUST00000076124 Annotated NA Excluded E3 2 0.00289954409709996 -0.00414197355949852 0.00696876759529277 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_116472506_116472533 ENSMUST00000076124.6 0 chr5:116471292-116475175 0 27 GTCTTTCTCCAAGAAAAGGAGACACAG 1 85.4148814199 2.49009674307 0 chr5_-_116472506_116472533|85.4148814199|2.49009674307 0 IN ENSMUST00000076124 Annotated NA Included I1 1 6.64505990669086e-07 -3.82036962585796e-06 -1.93415600125744e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_117099300_117099322 ENSMUST00000086471.11 0 chr5:117098376-117099476 0 22 CTTAAGTCACCCAAGAGACCAG 1 90.1982810324 4.09346150091 6.10498318565e-11 chr5_-_117099300_117099322|90.1982810324|4.09346150091 9.48163769720622e-12 IN ENSMUST00000086471 Annotated NA Included I1 1 1.37455055048241e-134 1.07426262293704e-135 2.59988814295969e-134 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_117106645_117106665 ENSMUST00000086471.11 0 chr5:117105311-117108347 0 20 AGCTCTTCCTCCAGCTGGAA 1 88.0293820931 3.63558342649 2.73939804174e-09 chr5_-_117106645_117106665|88.0293820931|3.63558342649 4.39308700528329e-10 IN ENSMUST00000086471 Annotated NA Included I1 1 1.65048758679309e-70 5.01290080630203e-69 5.6739869170896e-70 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_120877182_120877209 ENSMUST00000086368.11 0 chr5:120877027-120878320 0 27 ACGGTGGTTCCTGTACCTTTTGAGCAG 1 88.5011205471 -0.121451615326 0 chr5_-_120877182_120877209|88.5011205471|-0.121451615326 0 IN ENSMUST00000086368 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr5_-_120897179_120897206 ENSMUST00000080322.7 0 chr5:120897024-120898318 0 27 ACGGTGGTTCCTGTACCTTTTGAGCAG 1 86.281639976 -0.113387095351 0 chr5_-_120897179_120897206|86.281639976|-0.113387095351 0 IN ENSMUST00000080322 Annotated NA Included I1 1 4.98606468805085e-10 2.11370604220296e-10 1.26076089809083e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_120980129_120980141 ENSMUST00000079204.8 0 chr5:120973444-120986436 0 12 TGACAAGGAACA 1 75.3319423902 2.60350001231 0.000773130689593 chr5_-_120980129_120980141|75.3319423902|2.60350001231 0.000652076926279221 IN ENSMUST00000079204 Annotated NA Included I1 1 -1.76650864559873e-05 8.36804194725928e-05 3.75161216184161e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_121572016_121572019 ENSMUST00000199369.4 1 chr5:121570761-121575895 1 3 GAG 2 75.2057817878 5.33085720028 0.268703868244 chr5_-_121570951_121570954|68.5021100827|0.103142857552,chr5_-_121572016_121572019|75.2057817878|5.33085720028 0.614356550752882 RESCUED ENSMUST00000199369 Novel Alt5 Excluded E1 6 0.000239986289484407 4.74363373415744e-05 0.000442857830207382 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_122250446_122250467 ENSMUST00000111738.7 0 chr5:122248983-122251611 0 21 GTACCTAATTCAATGACACAG 1 86.1933897023 1.1411199972 5.91853677179e-10 chr5_-_122250446_122250467|86.1933897023|1.1411199972 1.07802877735708e-10 IN ENSMUST00000111738 Annotated NA Included I1 1 -1.63481263363803e-15 3.77446874419782e-14 6.01765975730915e-15 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_122500930_122500948 ENSMUST00000179939.7 0 chr5:122500813-122501567 0 18 AATTGCCGGCTGAAGAAG 1 82.5896987555 4.62277277796 1.06520018361e-08 chr5_-_122500930_122500948|82.5896987555|4.62277277796 3.13019943298798e-09 IN ENSMUST00000179939 Annotated NA Included I1 1 2.68650484052639e-101 -9.68839705308209e-102 -1.3237970313089e-101 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_122748177_122748199 ENSMUST00000111668.7 0 chr5:122748042-122750014 0 22 TGTTTGAGTTGGTGAACCAAGG 1 84.6443833345 3.14238462626 1.10617293103e-10 chr5_-_122748177_122748199|84.6443833345|3.14238462626 2.39575026483863e-11 IN ENSMUST00000111668 Annotated NA Included I1 1 7.11990759893146e-06 -3.70094514090493e-05 -1.53963201169654e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_122937627_122937650 ENSMUST00000046073.15 63 chr5:122934859-122940952 63 23 TGAAATCAGCTTTCCCAGAAAAG 1 75.3034923803 0.885777772853 0 chr5_-_122937627_122937650|75.3034923803|0.885777772853 0 IN ENSMUST00000046073 Novel NA Excluded E2 3 0.00944759236331363 0.000753361453335802 0.0243480770500244 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_123182545_123182572 ENSMUST00000031398.13 0 chr5:123181923-123182673,chr5:123047397-123229022 0 27 ACAACCTACAACAACAAAGGACCAAAG 1 84.6118246459 2.66706449647 0 chr5_-_123182545_123182572|84.6118246459|2.66706449647 0 IN ENSMUST00000031398 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr5_-_123517804_123517833 ENSMUST00000200247.4 0 chr5:123512609-123517954 0 29 ATGACTTCAAAACAGCAGGAATATTTGAA 1 73.7802429389 2.24766663056 0 chr5_-_123517804_123517833|73.7802429389|2.24766663056 0 IN ENSMUST00000200247 Annotated Alt3 Excluded E2 3 -1.86797080166106e-05 -0.000641645731608677 0.000855980512801461 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_123581591_123581597 ENSMUST00000111564.7 3864 chr5:123580124-123582719 3864 6 CAAATG 1 76.1949375348 3.24629999399 0.00246221305195 chr5_-_123581591_123581597|76.1949375348|3.24629999399 0.00193004267719277 IN ENSMUST00000111564 Annotated NA Neuronal N2 8 0.0710329244712998 -0.0272294260529069 -0.0379171389407962 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE TRUE FALSE chr5_-_123586333_123586345 ENSMUST00000111564.7 15 chr5:123583638-123590792 15 12 TAACACTTTAAG 1 73.0189980121 3.29681253433 1.66194375362e-06 chr5_-_123586333_123586345|73.0189980121|3.29681253433 1.57238537801252e-06 IN ENSMUST00000111564 Novel NA Excluded E1 6 0.00349262875065024 0.0016325881129782 0.000436224135083237 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_123586333_123586354 ENSMUST00000111564.7 142 chr5:123583638-123590792 142 21 CTTGCCCAGTAACACTTTAAG 1 78.2330492924 3.51152003765 6.33182395404e-12 chr5_-_123586333_123586354|78.2330492924|3.51152003765 3.86901621851621e-12 IN ENSMUST00000111564 Annotated Alt3 Neuronal N4 13 0.0393982853295831 0.0192482285996397 -0.010327161922006 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_124071822_124071847 ENSMUST00000153433.7 0 chr5:124062563-124073593 0 25 AGACCGGGGAGAAGGGAGCCCAGCT 1 72.4042153938 3.07451728153 9.77085079512e-12 chr5_-_124071822_124071847|72.4042153938|3.07451728153 9.39159860990912e-12 IN ENSMUST00000153433 Annotated Alt3 Excluded E2 3 0.00127373345593757 -0.000182602535492082 0.00597821599371495 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_124468781_124468800 ENSMUST00000031347.7 2 chr5:124468691-124469697 2 19 GGATGGAATCTAAGGCATG 1 77.7421830404 0.183347828362 1.3969270185e-11 chr5_-_124468781_124468800|77.7421830404|0.183347828362 9.14845976751621e-12 IN ENSMUST00000031347 Novel NA Excluded E1 6 -0.000218959942707725 0.000275026326698467 -0.00025230285646053 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_124495898_124495922 ENSMUST00000062153.11 54 chr5:124493844-124496182,chr5:124493844-124501839 6,48 24 TAAAGAAGGTCCTTTGAGTGACGG 1 77.1267789413 2.12399999777 0 chr5_-_124495898_124495922|77.1267789413|2.12399999777 0 IN ENSMUST00000062153 Annotated NA Excluded E2 3 -0.00109507016831993 -0.00776354646579218 0.00711288685512356 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_125281104_125281118 ENSMUST00000111390.7 1 chr5:125277865-125283898 1 14 AAGCCAAGCTATAG 1 70.7065024811 2.0200000157 8.75297663239e-08 chr5_-_125281104_125281118|70.7065024811|2.0200000157 8.62660318734498e-08 IN ENSMUST00000111390 Novel Alt5 Excluded E1 6 -0.000371333756214103 0.000276328038324253 1.78753699492353e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_128579384_128579402 ENSMUST00000154305.7 38 chr5:128579285-128582714,chr5:128579285-128584163,chr5:128579285-128585271 10,3,25 18 GCGGAGACTTCTGTTTAG 1 82.5043487256 -0.0506363660097 1.93665528059e-10 chr5_-_128579384_128579402|82.5043487256|-0.0506363660097 5.77178305150028e-11 IN ENSMUST00000154305 Novel NA Excluded E1 6 -0.000165067804954787 -0.00333053242726664 -0.00226108826039392 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_128811982_128812003 ENSMUST00000200470.4 10 chr5:128806561-128813561 10 21 AACACCCTGGACTGCATGCAG 1 72.3130303497 3.99007996798 6.19504447741e-12 chr5_-_128811982_128812003|72.3130303497|3.99007996798 5.96633853433559e-12 IN ENSMUST00000200470 Annotated NA Excluded E2 3 0.00128278598024109 0.00301457358979613 -0.00953046232733175 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_128989378_128989406 ENSMUST00000031378.13 39 chr5:128988912-128990963 39 28 ACTCTGTCTCCTCCTGGACGGGACCCAG 1 77.05582655 1.14593750681 0 chr5_-_128989378_128989406|77.05582655|1.14593750681 0 IN ENSMUST00000031378 Annotated NA Neuronal N4 13 0.0215208316229417 0.00744207928163217 0.022121841909924 TRUE TRUE FALSE 15.5 1 FALSE FALSE FALSE chr5_-_131460126_131460156 ENSMUST00000161226.8 0 chr5:131457910-131461281,chr5:131457910-131466031 0 30 TTGACAGATCCTTTCAGACCTATGCTAAGG 1 87.7296902405 4.53764704396 0 chr5_-_131460126_131460156|87.7296902405|4.53764704396 0 IN ENSMUST00000161226 Annotated NA Included I1 1 3.27596778916379e-16 -1.23398284217083e-15 -9.84250553413006e-16 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_131770759_131770789 ENSMUST00000161226.8 0 chr5:131533872-132030989 0 30 TGCGACAGTGACAGCGACCAGGAAGAGAAG 1 84.4404685786 3.88138238001 0 chr5_-_131770759_131770789|84.4404685786|3.88138238001 0 IN ENSMUST00000161226 Annotated Alt3 Neuronal N5 14 0.0130847408059288 0.0140224091601612 0.0309524767323942 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_134242130_134242159 ENSMUST00000059042.13 0 chr5:134240914-134242603 0 29 ACCATTTCCAGGACTTGTGATTAATAACC 1 81.0784991363 2.95375755711 0 chr5_-_134242130_134242159|81.0784991363|2.95375755711 0 IN ENSMUST00000059042 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_134286694_134286723 ENSMUST00000059042.13 0 chr5:134283248-134286859 0 29 ACCTTTCCTCGAGCCGAAGAAACACCTCG 1 83.7132669889 2.33287879938 0 chr5_-_134286694_134286723|83.7132669889|2.33287879938 0 IN ENSMUST00000059042 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_134376106_134376135 ENSMUST00000111244.4 0 chr5:134363979-134376893,chr5:134366895-134376893,chr5:134363979-134379936,chr5:134366916-134376893 0 29 GCCATTCCAAGGACTTATCCCAAAGCCTG 1 90.0917316019 3.06266663652 0 chr5_-_134376106_134376135|90.0917316019|3.06266663652 0 IN ENSMUST00000111244 Annotated Alt3 Included I2 10 -0.00325903457795489 0.000113091114407641 0.0019658482584463 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_134392394_134392420 ENSMUST00000200798.3 763 chr5:134390930-134395616 763 26 AATGTTCGATGAGCGCATTTTCACAG 1 92.1937177751 3.86026667158 0 chr5_-_134392394_134392420|92.1937177751|3.86026667158 0 IN ENSMUST00000200798 Annotated NA Included I1 1 -0.000214592900357257 -0.000217108045527543 -0.000182544019632165 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_134705287_134705317 ENSMUST00000015138.12 0 chr5:134704580-134705740 0 30 GTGGTGGTGCTGGGGGCCTGGGAGTTGGTG 1 85.6607461298 1.40388235472 0 chr5_-_134705287_134705317|85.6607461298|1.40388235472 0 IN ENSMUST00000015138 Annotated NA Included I1 1 -9.36951353333949e-39 1.04216461748552e-36 -4.0016125004131e-36 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_134725768_134725798 ENSMUST00000015138.12 0 chr5:134712654-134726463,chr5:134724990-134726467 0 30 GTGGAGGTGGTGCTTTTGCTGGAATCCCAG 1 93.3385544626 1.71582350813 0 chr5_-_134725768_134725798|93.3385544626|1.71582350813 0 IN ENSMUST00000015138 Annotated NA Included I1 1 3.32119686271452e-34 -1.69701738582285e-33 7.05758891046499e-33 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_134732532_134732562 ENSMUST00000015138.12 0 chr5:134731100-134736302 0 30 GTGCCGGACTTCTGGGAACGTTTGGAGCAG 1 91.1395137044 0.390470585567 0 chr5_-_134732532_134732562|91.1395137044|0.390470585567 0 IN ENSMUST00000015138 Annotated NA Included I1 1 -3.60274241044934e-33 -4.10133739358246e-32 1.65117644492067e-31 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_135056373_135056384 ENSMUST00000111205.7 2 chr5:135053638-135056841 2 11 GTTCTACCTCT 1 73.8877245906 3.9324000299 2.96905196162e-06 chr5_-_135056373_135056384|73.8877245906|3.9324000299 2.72232705822439e-06 IN ENSMUST00000111205 Novel Alt3 Excluded E1 6 -0.000406176100390841 -5.77089590743715e-05 -0.00106859975590564 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_136529621_136529637 ENSMUST00000004097.15 23 chr5:136485851-136567177 23 16 GCCCTGAACAGGCTAG 1 80.4029840332 -0.190550007671 7.39473734468e-08 chr5_-_136529621_136529637|80.4029840332|-0.190550007671 3.16806660904945e-08 IN ENSMUST00000004097 Novel NA Excluded E1 6 3.20341001685762e-05 -9.43504674308238e-07 9.98245500456899e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_137530397_137530423 ENSMUST00000111023.7 0 chr5:137485852-137533138,chr5:137529909-137533138,chr5:137530290-137533138,chr5:137529765-137533138 0 26 CATGCGGGGATTCCACACTGACCCAG 1 68.2280025231 3.67576666102 6.25721696679e-13 chr5_-_137530397_137530423|68.2280025231|3.67576666102 6.23945339839338e-13 IN ENSMUST00000111023 Annotated Alt5 Excluded E3 2 -0.00026985305186977 0.000156023241246515 -0.000885946862344673 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_138276846_138276869 ENSMUST00000161827.7 3 chr5:138276746-138277406 3 23 CTTCCAACAGATAGCCTGGGGAG 1 81.471516689 -0.0547036995025 0 chr5_-_138276846_138276869|81.471516689|-0.0547036995025 0 IN ENSMUST00000161827 Novel NA Excluded E2 3 -0.0029231893076088 -0.00235686039667855 0.00436145729442417 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_139130116_139130121 ENSMUST00000147505.7 1 chr5:139127785-139130506 1 5 GATGC 1 64.4588250498 -0.337111123113 0.0102921483198 chr5_-_139130116_139130121|64.4588250498|-0.337111123113 0.0102905579951915 IN ENSMUST00000147505 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr5_-_140360365_140360382 ENSMUST00000196020.1 1 chr5:140360284-140389147 1 17 GCCCACGAACATCCCAG 1 83.228719125 1.68695238995 6.55791154713e-09 chr5_-_140360365_140360382|83.228719125|1.68695238995 1.73949910031723e-09 IN ENSMUST00000196020 Novel Alt3 Excluded E1 6 0.000402499241623755 -8.79024075918847e-05 0.000583725447774498 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_140674336_140674360 ENSMUST00000041783.13 0 chr5:140671926-140675077,chr5:140671926-140677415 0 24 AAAAGAGAAGCAGCTCTGGATGAG 1 86.1600714261 0.833857133186 1.10951248189e-11 chr5_-_140674336_140674360|86.1600714261|0.833857133186 2.02726724296554e-12 IN ENSMUST00000041783 Annotated Alt5 Other O1 4 0.00370527050061312 -0.00271055590006364 0.00743425761722823 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_146220737_146220763 ENSMUST00000161859.7 2 chr5:146220484-146221219 2 26 CTACACCCAGATGGGAACGTGATACG 1 72.4309390682 -0.205866668435 0 chr5_-_146220737_146220763|72.4309390682|-0.205866668435 0 IN ENSMUST00000161859 Novel NA Excluded E1 6 0.000392377978315853 6.11352662056849e-05 0.00179633117422051 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_149139913_149139917 ENSMUST00000202133.3 34 chr5:149050751-149181998 34 4 GCAA 8 71.9550228821 None 0.865011203943 chr5_-_149124820_149124824|69.3822304759|0.385749997571,chr5_-_149099556_149099560|69.4862594566|None,chr5_-_149076233_149076237|70.0415525516|-0.144874993246,chr5_-_149165488_149165492|63.1534046289|0.094249997288,chr5_-_149119242_149119246|59.3556735656|None,chr5_-_149095054_149095058|62.7101161848|0.162874991074,chr5_-_149181107_149181111|69.5410878738|0.620875009568,chr5_-_149139913_149139917|71.9550228821|None 0.979857966763119 RESCUED ENSMUST00000202133 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr5_-_20812940_20812952 ENSMUST00000118174.7 14 chr5:20807473-20813239 14 12 TTTATTAAACTG 1 84.8564809209 3.81662509963 1.33877530506e-06 chr5_-_20812940_20812952|84.8564809209|3.81662509963 2.82240221083363e-07 IN ENSMUST00000118174 Missing in GENCODE Alt5 Excluded E2 3 -0.00078260216625488 -0.00460089080746199 0.00413514124954966 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_20853123_20853152 ENSMUST00000118174.7 29 chr5:20813296-20855121 29 29 GGGTTTCGGAGAGGGATTGCAAATTCCAG 1 82.9071373376 -0.0276666725139 0 chr5_-_20853123_20853152|82.9071373376|-0.0276666725139 0 IN ENSMUST00000118174 Novel NA Excluded E2 3 0.00107636329068884 -0.00455477605462117 0.0035362538528922 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_21891561_21891565 ENSMUST00000062372.13 132 chr5:21885569-21895988 132 4 TAAG 1 85.3226605745 3.89837491512 0.14688460983 chr5_-_21891561_21891565|85.3226605745|3.89837491512 0.0292871169416508 IN ENSMUST00000062372 Novel Alt5 Neuronal N6 15 0.00922955011750929 -0.00147359016646573 0.00171987607652997 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_21891561_21891567 ENSMUST00000062372.13 3891 chr5:21885569-21895988 3891 6 AGTAAG 1 85.8467069959 4.10929989815 0.00987769263657 chr5_-_21891561_21891567|85.8467069959|4.10929989815 0.00186103974161866 IN ENSMUST00000062372 Annotated Alt5 Neuronal N2 8 0.0719819723480829 -0.0204363254616014 -0.0700859131046645 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_23526789_23526815 ENSMUST00000196929.4 1749 chr5:23525745-23527896 1749 26 TGAGTACGGCTCCACAGCAAAAACCT 1 81.9477781423 3.74530001208 0 chr5_-_23526789_23526815|81.9477781423|3.74530001208 0 IN ENSMUST00000196929 Annotated NA Included I1 1 8.8307507270237e-05 0.000304441134489923 0.000430912826643923 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_23763333_23763351 ENSMUST00000119946.7 330 chr5:23762474-23768767 330 18 AGGTCAGAGCTGCTGCAG 1 80.5156101648 4.56018190154 3.56465079676e-10 chr5_-_23763333_23763351|80.5156101648|4.56018190154 1.49742884758552e-10 IN ENSMUST00000119946 Annotated NA Neuronal N3 17 0.0611232945764566 0.0244696794442835 0.0362978399080719 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr5_-_25304096_25304119 ENSMUST00000172556.7 300 chr5:25302938-25304677 300 23 AAACCAGAAAGGCTTTCCTTGCG 1 80.2631508531 3.36722217224 0 chr5_-_25304096_25304119|80.2631508531|3.36722217224 0 IN ENSMUST00000172556 Missing in GENCODE NA Excluded E2 3 0.0096338815483762 0.000872404872474447 0.0197729465886727 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_27780261_27780272 ENSMUST00000002291.11 93 chr5:27775679-27781421 93 11 GCAATGAGTAA 1 83.9806073131 0.115000004321 5.3336701632e-06 chr5_-_27780261_27780272|83.9806073131|0.115000004321 1.26444067927167e-06 IN ENSMUST00000002291 Missing in GENCODE NA Neuronal N6 15 0.0103455175787498 -0.00387600976661196 0.0187229800585368 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_27780265_27780272 ENSMUST00000002291.11 315 chr5:27775679-27781421 315 7 GCAATGA 1 81.1791790259 -0.201818180355 0.00136544397163 chr5_-_27780265_27780272|81.1791790259|-0.201818180355 0.000510631605692202 IN ENSMUST00000002291 Novel NA Neuro-Muscular NM4 16 0.0224993972671697 -0.00614811089389735 0.0263544177234392 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_29323801_29323824 ENSMUST00000198367.1 5 chr5:29292949-29346766 5 23 AAGGTTTTGCAGGCCTGAAAAAG 1 84.5567890683 3.86170372257 0 chr5_-_29323801_29323824|84.5567890683|3.86170372257 0 IN ENSMUST00000198367 Annotated Alt5 Excluded E3 2 -0.00130210689484582 -0.00211664664563984 -0.0118943928274401 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_29363882_29363899 ENSMUST00000200564.4 1 chr5:29361087-29378126 1 17 ATACAAGAGAAAATCCG 1 80.5233786748 3.01314284351 3.86944520869e-09 chr5_-_29363882_29363899|80.5233786748|3.01314284351 1.6232596378174e-09 IN ENSMUST00000200564 Novel Alt5 Excluded E1 6 0.000857841502691166 0.000262432535855268 0.000135699755519382 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_29365177_29365206 ENSMUST00000055195.10 1 chr5:29363955-29378126 1 29 AGAAATGGAAGATTCACCTCGTATCTGTG 1 76.9508308214 0.119515154624 0 chr5_-_29365177_29365206|76.9508308214|0.119515154624 0 IN ENSMUST00000055195 Novel NA Excluded E3 2 -0.00953328868983306 0.00802145269143273 -0.00765967137663505 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_30379533_30379563 ENSMUST00000114747.8 0 chr5:30379244-30380102 0 30 ACTTCTGATGCTGTGGTCAAGGTGGATGTG 1 86.024070711 3.72291170893 0 chr5_-_30379533_30379563|86.024070711|3.72291170893 0 IN ENSMUST00000114747 Annotated NA Included I1 1 -4.16502729582349e-05 0.000196386529336379 8.71462793530374e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_31166360_31166386 ENSMUST00000101411.5 0 chr5:31166015-31167695 0 26 ATGCTATGAAGCCTGCCATCTACAAG 1 89.5610905787 1.84723335976 3.66373598126e-13 chr5_-_31166360_31166386|89.5610905787|1.84723335976 5.6621374255883e-14 IN ENSMUST00000101411 Annotated NA Included I1 1 4.74392657660072e-118 8.86721960878366e-119 9.30768246039523e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_32774395_32774414 ENSMUST00000142957.5 1 chr5:32764948-32785548 1 19 AAATTGCCTCTTCAGGCAG 1 81.5668794651 0.891565226342 2.92416757475e-10 chr5_-_32774395_32774414|81.5668794651|0.891565226342 1.02206354490875e-10 IN ENSMUST00000142957 Novel Alt5 Excluded E3 2 -0.000990555434585224 -0.000388450892889876 -0.000430144176129425 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_34184313_34184343 ENSMUST00000119171.1 554 chr5:34178924-34187328 554 30 GTCTTCACACAACGAACTAGAAAAGCACAG 1 87.7961541594 3.6936470669 0 chr5_-_34184313_34184343|87.7961541594|3.6936470669 0 IN ENSMUST00000119171 Annotated NA Included I1 1 0.0012759190412457 0.000172416409899961 0.0011965707736642 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_44001269_44001293 ENSMUST00000165909.7 93 chr5:43995114-44001785 93 24 TGTTGAGACTGTGCCCATGAAAAA 1 82.3178354321 2.41757143608 0 chr5_-_44001269_44001293|82.3178354321|2.41757143608 0 IN ENSMUST00000165909 Annotated NA Non-Neuronal NN1 23 -0.0411189810026078 -0.0317215813012156 0.0371113501562287 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_44058625_44058652 ENSMUST00000165909.7 52 chr5:44056083-44063125 52 27 CCAGAAATCATAGTCTTGGCTCTGAAG 1 83.0566379967 3.26403226054 0 chr5_-_44058625_44058652|83.0566379967|3.26403226054 0 IN ENSMUST00000165909 Annotated NA Neuronal N1 18 0.0590342759200729 0.0491999532695231 -0.0887155022082845 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE FALSE FALSE chr5_-_65639549_65639558 ENSMUST00000201948.3 55 chr5:65638662-65644019 55 9 CCAGAGGAG 1 82.7605369221 -0.000538452313497 7.96286354852e-05 chr5_-_65639549_65639558|82.7605369221|-0.000538452313497 2.27552852331003e-05 IN ENSMUST00000201948 Novel NA Excluded E1 6 0.000886808593296412 -1.72493821394162e-05 0.0028555636163651 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_66323601_66323607 ENSMUST00000160775.7 840 chr5:66313429-66337465,chr5:66313429-66362717 693,147 6 AGAGAG 1 77.3434340536 3.39110002518 0.0226524809692 chr5_-_66323601_66323607|77.3434340536|3.39110002518 0.0156296819573273 IN ENSMUST00000160775 Annotated NA Neuronal N1 18 0.0749443093588937 0.0314575748567415 -0.0108412529552995 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr5_-_72524646_72524668 ENSMUST00000087216.11 0 chr5:72524227-72528158 0 22 GGAATGTCTGGGGAAGCATGAG 1 91.8011490697 3.2509230616 2.21973550651e-10 chr5_-_72524646_72524668|91.8011490697|3.2509230616 3.6614267173718e-11 IN ENSMUST00000087216 Annotated NA Included I1 1 1.85955094286486e-34 1.38383981899255e-32 4.97939939636162e-34 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_73024770_73024788 ENSMUST00000101127.11 561 chr5:73023998-73027315 561 18 CAAATGGGAATTCTAGCA 1 72.7696115776 5.94163635644 1.87299065146e-10 chr5_-_73024770_73024788|72.7696115776|5.94163635644 1.78445036524977e-10 IN ENSMUST00000101127 Annotated NA Neuronal N1 18 0.0642663241930681 0.0109990078773351 0.00544684149737833 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr5_-_73050866_73050875 ENSMUST00000101127.11 359 chr5:73050505-73054052 359 9 GAACTGCAG 1 89.6843509374 5.07892307868 5.26593175009e-05 chr5_-_73050866_73050875|89.6843509374|5.07892307868 8.14380835012507e-06 IN ENSMUST00000101127 Missing in GENCODE NA Neuronal N1 18 0.0544045753653694 0.0388301970915229 -0.0688695026554688 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr5_-_76344063_76344093 ENSMUST00000031146.2 0 chr5:76343972-76345438 0 30 GAACAAAGTGAGAAAGATAATACTAAGAGG 1 81.8015575207 1.47252939795 0 chr5_-_76344063_76344093|81.8015575207|1.47252939795 0 IN ENSMUST00000031146 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr5_-_8086593_8086623 ENSMUST00000115386.7 13 chr5:8082269-8087981,chr5:8082269-8090141,chr5:8082269-8092339 3,5,5 30 CTCCCAAGATGGCCCACATCAACAAGACAG 1 81.4076768002 2.20841176896 0 chr5_-_8086593_8086623|81.4076768002|2.20841176896 0 IN ENSMUST00000115386 Annotated NA Excluded E2 3 -0.000513412577408395 -0.00242126199559825 0.00506186524679543 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_8107001_8107019 ENSMUST00000115388.8 624 chr5:8092831-8111894,chr5:8095047-8111894,chr5:8095180-8111894 218,2,404 18 AAACTACCGAGAACAGAG 1 79.8992738446 3.48750002818 9.48830347625e-10 chr5_-_8107001_8107019|79.8992738446|3.48750002818 4.4353276607012e-10 IN ENSMUST00000115388 Annotated NA Neuronal N2 8 0.0564938702325997 -0.0188266028338806 -0.0168548569569816 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr5_-_83309202_83309231 ENSMUST00000146669.1 0 chr5:83300965-83313283 0 29 ACTTGGGTCAGCAAGTCGGGTGGACTACA 1 81.9842383492 2.17509090629 0 chr5_-_83309202_83309231|81.9842383492|2.17509090629 0 IN ENSMUST00000146669 Annotated Alt5 Excluded E3 2 0.00078439431888092 -0.00191863399158679 0.0011362610188662 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_86047131_86047148 ENSMUST00000031170.9 135 chr5:86046580-86047583 135 17 ACTGAAGGTGATTTTAT 1 78.2126094795 -0.130619044637 2.23280949285e-10 chr5_-_86047131_86047148|78.2126094795|-0.130619044637 1.36842870368525e-10 IN ENSMUST00000031170 Novel NA Excluded E1 6 0.000232155825518826 -4.83151781206654e-05 0.000931362555510728 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_86060524_86060553 ENSMUST00000031170.9 243 chr5:86058246-86062003 243 29 GTGCTTCTCAGCCATTCAGTTTTCCTCAG 1 87.220835572 None 0 chr5_-_86060524_86060553|87.220835572|None 0 IN ENSMUST00000031170 Missing in GENCODE NA Excluded E4 11 0.00338071338600348 -0.00061951800498134 -0.00616091200313834 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_86164078_86164107 ENSMUST00000039373.13 0 chr5:86160373-86164696 0 29 CAAAGAATCTTGTTCTTGCAGGGATTAAG 1 93.2292774219 3.61039399198 0 chr5_-_86164078_86164107|93.2292774219|3.61039399198 0 IN ENSMUST00000039373 Annotated NA Included I1 1 2.62652781828002e-59 -3.12124432851683e-58 1.18262480952741e-60 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_87696153_87696177 ENSMUST00000197422.4 0 chr5:87696069-87698027,chr5:87696072-87697119,chr5:87696069-87697119,chr5:87696072-87696315 0 24 GAATCTGTTGAACATATCAATGAG 1 87.626006527 0.669321429716 7.63833440942e-13 chr5_-_87696153_87696177|87.626006527|0.669321429716 1.25011112572793e-13 IN ENSMUST00000197422 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr5_-_87697119_87697140 ENSMUST00000197422.4 0 chr5:87696069-87698027,chr5:87696177-87697256,chr5:87696177-87698027 0 21 ACTGATAGTATTTCCAGTGAG 1 88.9283885973 1.09188001931 2.39651853917e-10 chr5_-_87697119_87697140|88.9283885973|1.09188001931 3.73281405785519e-11 IN ENSMUST00000197422 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr5_-_87697256_87697280 ENSMUST00000197422.4 0 chr5:87696069-87698027,chr5:87697140-87698027,chr5:87696177-87698027 0 24 ACTACATTTACTGTATCCTCTGAG 1 82.3488749454 -0.00182142694082 3.05178105009e-12 chr5_-_87697256_87697280|82.3488749454|-0.00182142694082 9.33364496802369e-13 IN ENSMUST00000197422 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr5_-_89881534_89881562 ENSMUST00000061427.9 0 chr5:89861705-89882821,chr5:89861705-89882019 0 28 GCTGGTACTGACGAAATGGTGCAAATAG 1 87.1891400511 2.05365627003 0 chr5_-_89881534_89881562|87.1891400511|2.05365627003 0 IN ENSMUST00000061427 Annotated NA Included I1 1 -3.98848525173172e-17 4.9679457356769e-17 9.91465715838333e-17 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_9126737_9126749 ENSMUST00000184159.7 1 chr5:9126643-9127956 1 12 TCCTAATAAAAG 1 73.4385666056 3.48475005105 3.019812993e-07 chr5_-_9126737_9126749|73.4385666056|3.48475005105 2.81829567905234e-07 IN ENSMUST00000184159 Novel Alt3 Excluded E2 3 -0.00016935553676357 -0.00377072839904342 -0.00266627725677154 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_91952940_91952967 ENSMUST00000140670.7 0 chr5:91951941-91953052 0 27 AACGTGTTATGAAGAAATGTTGAAAGA 1 83.5758161519 2.38829032212 0 chr5_-_91952940_91952967|83.5758161519|2.38829032212 0 IN ENSMUST00000140670 Annotated NA Included I1 1 4.22397625710266e-157 -2.19172772049263e-157 -8.87106136968522e-157 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_91961038_91961065 ENSMUST00000031345.14 15 chr5:91957997-91962629 15 27 GAGAGGCCAGCTGAGGTGTTTCAAGGA 1 80.9656313176 0.39290322123 0 chr5_-_91961038_91961065|80.9656313176|0.39290322123 0 IN ENSMUST00000031345 Novel Alt3 Excluded E1 6 0.000192952691858406 -0.00019239782615453 0.00100921304521045 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_92261351_92261380 ENSMUST00000113102.9 0 chr5:92259631-92262508 0 29 GTTTTATCCCTGTTTCCTGTTTATAACAA 1 88.2202457522 2.54233329224 0 chr5_-_92261351_92261380|88.2202457522|2.54233329224 0 IN ENSMUST00000113102 Annotated NA Included I1 1 0.000150846918291081 -6.73922109698838e-05 -0.000369093211657206 TRUE FALSE FALSE FALSE FALSE FALSE chr5_-_92421579_92421608 ENSMUST00000038514.14 8 chr5:92419624-92422481 8 29 GTGCTGGGGTTCTAACGTCATTACACCTG 1 83.6723873629 0.0232727243142 0 chr5_-_92421579_92421608|83.6723873629|0.0232727243142 0 IN ENSMUST00000038514 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_+_105678015_105678039 ENSMUST00000113261.8 7 chr6:105677890+105840416 7 24 GGCTGTCCGGGAGGCTGCGAGGAG 1 83.573295702 -0.328214285496 0 chr6_+_105678015_105678039|83.573295702|-0.328214285496 0 IN ENSMUST00000113261 Novel NA Excluded E1 6 -0.000257313864950755 0.00239404414293431 -0.000611050305795098 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_113284204_113284207 ENSMUST00000041203.5 0 chr6:113283982+113284384,chr6:113283453+113284384 0 3 AAG 1 77.7241600972 2.71128571033 0.997125736712 chr6_+_113284204_113284207|77.7241600972|2.71128571033 0.654614870108214 RESCUED ENSMUST00000041203 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_+_113459359_113459375 ENSMUST00000053569.6 117 chr6:113459026+113462278 117 16 GATAAACGTTTTGCTG 1 85.948526267 1.10849999133 2.93948687613e-09 chr6_+_113459359_113459375|85.948526267|1.10849999133 5.48182610415893e-10 IN ENSMUST00000053569 Annotated NA Included I3 5 0.00680432836256402 0.00963498545083036 0.0283700066741092 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_113472070_113472092 ENSMUST00000058300.13 0 chr6:113471787+113472230 0 22 GGCCTCTCCTGCCACCTCTGGG 1 89.4580628727 2.10338459866 2.3703705665e-11 chr6_+_113472070_113472092|89.4580628727|2.10338459866 3.66751073954674e-12 IN ENSMUST00000058300 Annotated NA Included I1 1 -9.91715379995272e-20 -1.06272896104059e-19 -1.18118844353186e-19 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_114408773_114408803 ENSMUST00000161650.2 5 chr6:114398419+114479724,chr6:114403897+114479724 3,2 30 GTCATCCTGTTTGCTCAGCCACTTGGGGAG 1 86.3330157221 -0.156470589285 0 chr6_+_114408773_114408803|86.3330157221|-0.156470589285 0 IN ENSMUST00000161650 Novel Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr6_+_117844569_117844597 ENSMUST00000112859.7 4 chr6:117843396+117845024 4 28 AATGTGAGAGGCTCCATTAATTTTAAAG 1 78.9672943312 0.309593749116 0 chr6_+_117844569_117844597|78.9672943312|0.309593749116 0 IN ENSMUST00000112859 Novel NA Excluded E1 6 0.000505744667484047 0.000440943480662012 -0.00012236894478164 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_119345429_119345450 ENSMUST00000185965.1 2 chr6:119345096+119347133 2 21 CCAAATCTGTCTTCCATCACT 1 73.172469243 2.70167996645 1.78701498044e-12 chr6_+_119345429_119345450|73.172469243|2.70167996645 1.68276503842435e-12 IN ENSMUST00000185965 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_+_12044464_12044490 ENSMUST00000115511.8 84 chr6:12007106+12045584,chr6:12007106+12047826 40,44 26 GGTGCTGTACTTAATCATAACGCTAA 1 86.3798684691 1.3025666664 0 chr6_+_12044464_12044490|86.3798684691|1.3025666664 0 IN ENSMUST00000115511 Missing in GENCODE Alt5 Excluded E1 6 0.00192089705564177 0.00119240543318955 0.00314486618735777 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_12047124_12047154 ENSMUST00000203045.1 29 chr6:12045764+12047826 29 30 CAGGATGAGATTGTCTGAAGCGAAGAATAG 1 81.4394413744 2.07647059595 0 chr6_+_12047124_12047154|81.4394413744|2.07647059595 0 IN ENSMUST00000203045 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_+_12047127_12047154 ENSMUST00000203045.1 6 chr6:12045764+12047826 6 27 GATGAGATTGTCTGAAGCGAAGAATAG 1 80.9104231065 2.05790322827 0 chr6_+_12047127_12047154|80.9104231065|2.05790322827 0 IN ENSMUST00000203045 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_+_120472091_120472116 ENSMUST00000204239.2 0 chr6:120463466+120472925 0 25 GGGCTGAGCTGCAGAGTCAAGAATA 1 84.3984150444 1.34824134885 8.37552249777e-12 chr6_+_120472091_120472116|84.3984150444|1.34824134885 1.87383442096234e-12 IN ENSMUST00000204239 Annotated NA Included I1 1 -8.53789642141079e-22 -6.6548647373631e-21 1.13104445104506e-21 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_120478163_120478175 ENSMUST00000002976.4 0 chr6:120477480+120478374 0 12 TTCCCAAGCCAG 1 90.8298091056 0.0475625079125 5.23314978547e-05 chr6_+_120478163_120478175|90.8298091056|0.0475625079125 8.25273773785717e-06 IN ENSMUST00000002976 Annotated NA Included I1 1 -3.48229168094294e-15 -5.13002927614268e-14 8.87330786504814e-15 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_121640984_121641005 ENSMUST00000032203.8 0 chr6:121639567+121641271 0 21 ATTCCTCTACTGTACATTCAG 1 94.0654453119 1.61939998835 3.81760401069e-10 chr6_+_121640984_121641005|94.0654453119|1.61939998835 7.69829755498108e-11 IN ENSMUST00000032203 Annotated NA Included I1 1 2.72591495428927e-08 -6.74567939082972e-07 1.51509515212594e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_121849445_121849466 ENSMUST00000032228.8 0 chr6:121841324+121849723 0 21 CTTCCTCTGGCTTACATTGAG 1 87.4545814063 0.659680002555 1.90402715816e-09 chr6_+_121849445_121849466|87.4545814063|0.659680002555 3.14718140437265e-10 IN ENSMUST00000032228 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_+_122023026_122023047 ENSMUST00000081777.7 0 chr6:122009640+122023304 0 21 CTTCCTCTGGCTTACATTGAG 1 87.4545814063 0.587079994977 3.10114955937e-09 chr6_+_122023026_122023047|87.4545814063|0.587079994977 5.12591413759367e-10 IN ENSMUST00000081777 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_+_122524486_122524510 ENSMUST00000032210.13 0 chr6:122520928+122525950,chr6:122515383+122525950,chr6:122521928+122525950 0 24 CTGGTGACAAAAATGCTACTGCAG 1 78.404854207 0.867321405493 1.41895384331e-11 chr6_+_122524486_122524510|78.404854207|0.867321405493 8.45223890877378e-12 IN ENSMUST00000032210 Annotated Alt5 Included I1 1 -0.00071389283399496 -0.00177208111783294 -0.00469882498596512 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_124326115_124326145 ENSMUST00000032234.4 0 chr6:124325572+124326500 0 30 AAATGACTTCAGAATCACATCATGGCACAG 1 83.3003275238 -0.276970583946 0 chr6_+_124326115_124326145|83.3003275238|-0.276970583946 0 IN ENSMUST00000032234 Annotated NA Included I1 1 3.73592883696748e-07 -2.22977501493834e-06 -7.74949372111209e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_124716424_124716430 ENSMUST00000143000.7 4358 chr6:124716030+124716605 4358 6 GGGAAG 1 85.8557184675 2.41160001755 0.00053868110491 chr6_+_124716424_124716430|85.8557184675|2.41160001755 0.000101399055707163 IN ENSMUST00000143000 Annotated Alt5 Other O2 21 -0.00175619763509552 0.000164340831504148 -0.00367051056085074 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_124934829_124934850 ENSMUST00000180095.3 49 chr6:124934745+124935232 49 21 GTATCTCAGGCAGAGCTGTGG 1 78.1479064228 -0.513679994643 4.10338429901e-13 chr6_+_124934829_124934850|78.1479064228|-0.513679994643 2.53908005731773e-13 IN ENSMUST00000180095 Novel NA Excluded E1 6 -2.18042809997499e-05 -3.11270159304374e-05 1.05377370318299e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_125047792_125047801 ENSMUST00000112417.8 7 chr6:125047587+125047901 7 9 AAGTCCTGA 1 72.6014664944 3.32861536526 4.48523949403e-06 chr6_+_125047792_125047801|72.6014664944|3.32861536526 4.29144325275743e-06 IN ENSMUST00000112417 Novel Alt3 Excluded E1 6 -0.000253464119197973 -0.000389559791204171 -0.000759779837926411 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_125151794_125151803 ENSMUST00000144364.7 282 chr6:125151525+125152443,chr6:125151525+125152613,chr6:125151525+125153041 35,246,1 9 AAGAAGCTG 1 81.2016904416 1.78784613884 1.34854600513e-05 chr6_+_125151794_125151803|81.2016904416|1.78784613884 5.02329642793065e-06 IN ENSMUST00000144364 Annotated Alt3 Excluded E3 2 -0.0106996236584834 0.0090797694093272 0.0182222687605297 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_125361091_125361120 ENSMUST00000032491.14 0 chr6:125360823+125361298 0 29 TTTGTAGGGATCCCGTGCCTGTCAAAGAG 1 88.1594787406 0.992454537049 0 chr6_+_125361091_125361120|88.1594787406|0.992454537049 0 IN ENSMUST00000032491 Annotated NA Included I1 1 -1.84486500854867e-107 -6.63043696245385e-108 -2.52461967548912e-107 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_125880420_125880432 ENSMUST00000160317.1 55 chr6:125872750+125880645 55 12 GAACGTTCCCAG 1 73.5041673568 2.08037503064 1.83447095892e-06 chr6_+_125880420_125880432|73.5041673568|2.08037503064 1.70798943599504e-06 IN ENSMUST00000160317 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_+_140537005_140537023 ENSMUST00000204145.2 1176 chr6:140536763+140543719 1176 18 AATTACCTTTAATTTCCG 1 88.9447197317 2.5634545738 3.94152266381e-10 chr6_+_140537005_140537023|88.9447197317|2.5634545738 6.13732398235811e-11 IN ENSMUST00000204145 Annotated NA Neuronal N4 13 0.036554050194313 0.000657970601017771 0.0659882171905424 TRUE TRUE TRUE 13.5 1 TRUE FALSE FALSE chr6_+_140650755_140650782 ENSMUST00000095350.10 0 chr6:140648085+140651315,chr6:140648085+140653757,chr6:140648085+140677390 0 27 AACAATGCCGCAGAAGAGGTTGAAGAG 1 85.3549775761 4.08425804492 0 chr6_+_140650755_140650782|85.3549775761|4.08425804492 0 IN ENSMUST00000095350 Annotated NA Included I1 1 -1.85043296083227e-19 -4.06433596431761e-19 9.48422188907506e-20 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_145160532_145160560 ENSMUST00000135984.7 0 chr6:145160437+145160876 0 28 CACTTCAGCTAATGAGAAGGAAGTGGAG 1 82.5706400109 2.78656247875 0 chr6_+_145160532_145160560|82.5706400109|2.78656247875 0 IN ENSMUST00000135984 Annotated NA Included I1 1 3.8430058278124e-10 1.29058807011039e-09 -3.05833343902777e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_145214521_145214545 ENSMUST00000111719.1 0 chr6:145211476+145215183,chr6:145211252+145215183,chr6:145211244+145215183,chr6:145211252+145214764 0 24 CTAAAGCACCGAGTCAAAAGCATG 1 80.4620592359 -0.14324999895 1.15818465929e-11 chr6_+_145214521_145214545|80.4620592359|-0.14324999895 4.91096052712692e-12 IN ENSMUST00000111719 Annotated Alt3 Excluded E1 6 0.000601408761256692 -0.00137698316434976 -0.000870967190816332 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_146648255_146648279 ENSMUST00000134387.7 0 chr6:146642652+146649149 0 24 ATCAACCAGCCAATCCTACAGAAG 1 74.3201025941 3.61539287918 2.29825047882e-11 chr6_+_146648255_146648279|74.3201025941|3.61539287918 2.06464845220466e-11 IN ENSMUST00000134387 Annotated Alt5 Excluded E3 2 -0.00145223617104619 -0.000395870320024362 -0.00686629958727893 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_147012917_147012947 ENSMUST00000016631.13 128 chr6:147012518+147016221 128 30 GAAAAGGAGTCTATCCAGAAGCTTTCAGAG 1 84.8641113241 1.42344117652 0 chr6_+_147012917_147012947|84.8641113241|1.42344117652 0 IN ENSMUST00000016631 Annotated NA Excluded E3 2 0.00324892872695385 -0.00492907962557895 0.013041884382481 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_149538130_149538139 ENSMUST00000086829.10 159 chr6:149519113+149550349,chr6:149520546+149550349 93,66 9 CAAAAAGAG 1 79.2693685268 2.39315384626 0.00044380708376 chr6_+_149538130_149538139|79.2693685268|2.39315384626 0.000230652451300828 IN ENSMUST00000086829 Missing in GENCODE NA Excluded E2 3 -0.000916571292908933 0.00300517337911172 0.00412263747258353 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_17650039_17650054 ENSMUST00000136771.5 0 chr6:17637160+17654105 0 15 GGAAGGAGCCGCACA 1 78.9731638721 5.21099996724 1.57634416609e-05 chr6_+_17650039_17650054|78.9731638721|5.21099996724 8.59631938143757e-06 IN ENSMUST00000136771 Annotated Alt5 Excluded E1 6 0.00155651441681867 2.84349562566281e-05 0.00489951903427468 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_23024713_23024734 ENSMUST00000090568.6 0 chr6:23022284+23024944 0 21 ACACTGAAAGAGTTTTACCAG 1 83.4174076013 4.69720001698 5.99129634793e-10 chr6_+_23024713_23024734|83.4174076013|4.69720001698 1.54363410942437e-10 IN ENSMUST00000090568 Annotated NA Included I1 1 9.94280014947312e-09 -5.78203530820972e-08 -2.66276649762294e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_29451996_29452020 ENSMUST00000065090.7 0 chr6:29451793+29452132 0 24 TGTCCATTGGAGGCCATGGACTGG 1 83.8090095588 3.26578574505 1.10489395411e-12 chr6_+_29451996_29452020|83.8090095588|3.26578574505 2.68451927354363e-13 IN ENSMUST00000065090 Annotated NA Included I1 1 6.98469751172282e-17 -4.00435339077286e-17 1.6522665307332e-15 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_30740322_30740343 ENSMUST00000163949.8 1 chr6:30738335+30740669 1 21 CTCTCTGCTTAAGGCCATGCA 1 66.3723644337 0.471479994506 2.05080397109e-12 chr6_+_30740322_30740343|66.3723644337|0.471479994506 2.04936068115558e-12 IN ENSMUST00000163949 Novel Alt5 Excluded E1 6 -0.00032466592881092 4.64829284664471e-05 -0.000694819035949777 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_30740920_30740925 ENSMUST00000115127.7 54 chr6:30740824+30742140 54 5 TGAAG 1 82.4306341973 -0.434666672515 0.00497341027199 chr6_+_30740920_30740925|82.4306341973|-0.434666672515 0.00150046067842358 IN ENSMUST00000115127 Novel NA Excluded E1 6 -3.10571169155667e-05 2.14481700490691e-05 -4.43428829806953e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_31328331_31328360 ENSMUST00000144612.7 0 chr6:31277955+31335990,chr6:31285120+31335990 0 29 AGGAGCCAAGAATAGGACAGCTTGGGAAG 1 78.7102429669 0.448939393246 0 chr6_+_31328331_31328360|78.7102429669|0.448939393246 0 IN ENSMUST00000144612 Annotated Alt5 Excluded E2 3 0.00171913766957664 0.00031484591696899 -0.00474951794504114 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_34783569_34783593 ENSMUST00000115012.7 0 chr6:34782218+34785190 0 24 GATGAGGATTCCTTCATGAAATTT 1 83.395206926 1.70767859303 1.04591890704e-11 chr6_+_34783569_34783593|83.395206926|1.70767859303 2.70394817647457e-12 IN ENSMUST00000115012 Annotated Alt3 Excluded E3 2 -0.00270348475684039 0.000318978600661361 -0.00466175362566012 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_38598784_38598814 ENSMUST00000163047.7 617 chr6:38593469+38603276 617 30 GTCCCGATCACATAGCAAGAATCCCAAAAG 1 89.7670769372 3.23052939707 0 chr6_+_38598784_38598814|89.7670769372|3.23052939707 0 IN ENSMUST00000163047 Annotated NA Included I1 1 -0.0020368027349981 -0.000454171056721742 -0.00270898274605026 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_41539113_41539131 ENSMUST00000103291.1 0 chr6:41538592+41539228 0 18 ACTGTGGGATTACCTCAG 1 92.1867088528 1.37340908989 8.93487595022e-09 chr6_+_41539113_41539131|92.1867088528|1.37340908989 1.51097190315141e-09 IN ENSMUST00000103291 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_+_41547609_41547627 ENSMUST00000103299.2 0 chr6:41547104+41547771 0 18 ACTGTGGAATCACTTCAG 1 90.2087771526 0.724181825464 9.3859853223e-09 chr6_+_41547609_41547627|90.2087771526|0.724181825464 1.45796741346516e-09 IN ENSMUST00000103299 Annotated NA Included I1 1 2.82831631955414e-15 1.50353086306431e-13 -5.740206817613e-14 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_41615615_41615644 ENSMUST00000167082.1 0 chr6:41614841+41615916 0 29 TTCGGACCCACCAGAGGCTCCCTGCACTG 1 76.7665962909 1.91724240692 0 chr6_+_41615615_41615644|76.7665962909|1.91724240692 0 IN ENSMUST00000167082 Annotated Alt5 Excluded E3 2 -0.00141875648132265 0.000312981781025766 -0.00377966020687344 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_42351341_42351362 ENSMUST00000070635.12 6 chr6:42351148+42351474 6 21 AACGATCCCTTCAAAGCCCGG 1 69.6727382233 2.61200002342 2.6734170433e-13 chr6_+_42351341_42351362|69.6727382233|2.61200002342 2.65343302885412e-13 IN ENSMUST00000070635 Novel Alt5 Excluded E2 3 0.000114759904306039 -0.000103088999472432 -0.000982488851031808 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_4508334_4508345 ENSMUST00000141483.7 0 chr6:4505909+4508939 0 11 ATTTGCAATCG 1 82.7108184581 1.93393332511 0.000718573118743 chr6_+_4508334_4508345|82.7108184581|1.93393332511 0.000207012696373909 IN ENSMUST00000141483 Annotated NA Included I1 1 -1.00213749903185e-42 5.92783854133242e-44 -4.71506736509088e-42 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_4508939_4508954 ENSMUST00000141483.7 0 chr6:4508345+4509603 0 15 GGATCAGTACGAAAG 1 90.5737244892 1.63784212933 1.1539080047e-06 chr6_+_4508939_4508954|90.5737244892|1.63784212933 1.8060726414415e-07 IN ENSMUST00000141483 Annotated Alt3 Other O2 21 -0.00238129149065435 9.34625358301725e-05 0.00115699989251349 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_48540149_48540166 ENSMUST00000203011.1 10 chr6:48539271+48540427 10 17 CTGGCTTCTGGCCTCAG 1 69.8125714034 0.328380946957 2.58069121628e-10 chr6_+_48540149_48540166|69.8125714034|0.328380946957 2.5595336961004e-10 IN ENSMUST00000203011 Novel Alt5 Excluded E2 3 -1.60462655749013e-05 0.000519767206888743 0.0017588493964962 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_5157003_5157027 ENSMUST00000176263.7 1226 chr6:5156240+5158088 1226 24 AGCCTGGATATGATAGATGACGAG 1 79.2898773932 5.50107125672 0 chr6_+_5157003_5157027|79.2898773932|5.50107125672 0 IN ENSMUST00000176263 Annotated NA Neuro-Muscular NM3 19 0.0493737691749436 -0.0389673582788075 -0.0259807426109161 TRUE TRUE TRUE 10.5 1 14.5 1 FALSE FALSE FALSE chr6_+_54842674_54842699 ENSMUST00000079869.12 28 chr6:54817472+54863899 28 25 TCCTTCTGGAACCAGTAGTCTAATG 1 80.4477997042 2.09886204785 0 chr6_+_54842674_54842699|80.4477997042|2.09886204785 0 IN ENSMUST00000079869 Annotated NA Excluded E2 3 0.00168437844074057 -0.0187416338079968 0.00668280274030087 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_54872489_54872514 ENSMUST00000079869.12 1 chr6:54863995+54878348 1 25 GGTTCAAGAGAAAGTAAATCCTCAG 1 77.6562460564 2.42851725889 0 chr6_+_54872489_54872514|77.6562460564|2.42851725889 0 IN ENSMUST00000079869 Novel NA Excluded E2 3 0.000324524485085046 -0.00811777553166595 0.00487826135765232 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_55474559_55474580 ENSMUST00000172084.7 9 chr6:55472327+55478081 9 21 TCTGGATGACAGAAACCATAG 1 84.1463355265 1.07567996889 5.08837416646e-12 chr6_+_55474559_55474580|84.1463355265|1.07567996889 1.17839071833714e-12 IN ENSMUST00000172084 Annotated NA Neuro-Muscular NM5 7 0.0176864682502229 -0.063689388591708 0.00147075861274068 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_5728070_5728091 ENSMUST00000115556.7 1 chr6:5725936+5757377 1 21 ACTGGTTTTGTGTGTATGTGT 1 75.3758948935 -0.267199998386 2.79030132333e-11 chr6_+_5728070_5728091|75.3758948935|-0.267199998386 2.34571251311877e-11 IN ENSMUST00000115556 Novel NA Excluded E1 6 -0.00028986617644452 0.000808232371534566 0.000806286672264772 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_5784438_5784447 ENSMUST00000115554.3 1 chr6:5769791+5800774 1 9 GACCCTGCA 1 64.4791958094 4.28030775144 0.000461382495958 chr6_+_5784438_5784447|64.4791958094|4.28030775144 0.000461309986500846 IN ENSMUST00000115554 Novel Alt3 Excluded E2 3 0.00203805327501165 -0.00517887805379181 0.00176208905373041 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_58884949_58884973 ENSMUST00000031823.11 0 chr6:58876881+58885067 0 24 AAGGCTAGACCCTCTATCATGCAG 1 84.9464230034 2.83364284305 2.89830381917e-11 chr6_+_58884949_58884973|84.9464230034|2.83364284305 6.04249983382488e-12 IN ENSMUST00000031823 Annotated NA Included I1 1 6.56750371431651e-36 -4.27065865726804e-36 -1.70357922215227e-35 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_67272218_67272228 ENSMUST00000204135.2 1 chr6:67271320+67272863 1 10 ATGAATTAAC 1 65.4987695889 4.41650002982 5.69595265498e-06 chr6_+_67272218_67272228|65.4987695889|4.41650002982 5.69389993454461e-06 IN ENSMUST00000204135 Novel Alt5 Excluded E1 6 1.06061806237025e-05 0.000233672177213121 0.000566649319647527 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_71866725_71866740 ENSMUST00000114151.9 9073 chr6:71863270+71868579 9073 15 GTATTTCTGACCTAG 1 90.5043948533 2.08778947788 1.92449076675e-08 chr6_+_71866725_71866740|90.5043948533|2.08778947788 3.00697666766325e-09 IN ENSMUST00000114151 Annotated NA Neuro-Muscular NM5 7 0.0182880815617845 -0.0107349303212777 -0.0201035374514508 TRUE TRUE TRUE 11.5 1 10.5 1 FALSE TRUE FALSE chr6_+_72419016_72419038 ENSMUST00000065906.8 1 chr6:72418466+72422415 1 22 GTACCTTGGTATATCCTCTCCT 1 83.2618992944 0.661730775395 8.71080985121e-13 chr6_+_72419016_72419038|83.2618992944|0.661730775395 2.29816166097407e-13 IN ENSMUST00000065906 Novel Alt3 Excluded E1 6 0.00148528439786425 0.000783903502153008 -0.000571335063827317 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_7557719_7557743 ENSMUST00000185187.7 0 chr6:7557260+7559098,chr6:7557260+7562382,chr6:7556780+7559098 0 24 GACATGGCCAGATCTCTCACAAAA 1 89.0225774653 2.44950000676 6.43041175863e-12 chr6_+_7557719_7557743|89.0225774653|2.44950000676 9.99866855977416e-13 IN ENSMUST00000185187 Annotated NA Included I1 1 2.01067810018867e-07 -1.80638511408144e-06 -3.09379502024014e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_83183935_83183956 ENSMUST00000077407.11 76 chr6:83183333+83189076 76 21 CGGGGACTGAAGCCTAAGAAG 1 72.8403568087 3.8344799298 5.07860420385e-12 chr6_+_83183935_83183956|72.8403568087|3.8344799298 4.82935913481697e-12 IN ENSMUST00000077407 Annotated NA Neuronal N3 17 0.0476309513540979 0.0197739361950946 0.0309141389486876 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE TRUE chr6_+_83187763_83187784 ENSMUST00000077407.11 202 chr6:83183333+83189076 202 21 ACCACAACTCGACGGCCCAAG 1 83.4661938441 3.36623996496 5.07860420385e-12 chr6_+_83187763_83187784|83.4661938441|3.36623996496 1.29884991650897e-12 IN ENSMUST00000077407 Annotated NA Neuro-Muscular NM2 9 0.0510758410141528 -0.0580376545257045 0.0478779815457087 TRUE TRUE TRUE 11.5 1 12.5 1 TRUE TRUE FALSE chr6_+_83197318_83197333 ENSMUST00000077407.11 2729 chr6:83196107+83197490 2729 15 AGGAACCACAGCGAG 1 74.915204987 2.16736842182 4.96220309287e-09 chr6_+_83197318_83197333|74.915204987|2.16736842182 4.30740509926864e-09 IN ENSMUST00000077407 Annotated NA Neuronal N1 18 0.0776871758362055 0.0412821160263919 -0.00225917680416051 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE TRUE chr6_+_83801090_83801118 ENSMUST00000113850.1 1 chr6:83800358+83801497 1 28 GTGCACATCAGGGAGACCCTCTTTCCAG 1 79.402848792 1.88709374634 0 chr6_+_83801090_83801118|79.402848792|1.88709374634 0 IN ENSMUST00000113850 Novel Alt3 Excluded E3 2 0.000172678335919721 -0.000122648160313248 -0.000798746910341818 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_84140656_84140686 ENSMUST00000113821.7 0 chr6:84140151+84149674,chr6:84140151+84141922 0 30 CCAGCCATCCATCACATCCCTGGCTTTGAG 1 87.7307260418 3.05532351574 0 chr6_+_84140656_84140686|87.7307260418|3.05532351574 0 IN ENSMUST00000113821 Annotated NA Included I1 1 5.11404326325742e-08 -1.18445879414496e-08 2.68497669455941e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_84141922_84141952 ENSMUST00000113821.7 0 chr6:84140686+84149674,chr6:84140151+84149674 0 30 ATGCATGAAACTTCAAGGATTTTGGATGAG 1 79.6923897915 1.26558822307 0 chr6_+_84141922_84141952|79.6923897915|1.26558822307 0 IN ENSMUST00000113821 Annotated NA Included I1 1 -4.28592805040995e-07 6.06155524456095e-08 -1.90184390188176e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_86375676_86375699 ENSMUST00000089558.6 0 chr6:86371614+86376494,chr6:86371704+86376494,chr6:86371993+86376494 0 23 GTTTATGGACAAGAAGTTATCAT 1 89.7749490274 4.35277784312 6.35793639958e-11 chr6_+_86375676_86375699|89.7749490274|4.35277784312 9.83468861903702e-12 IN ENSMUST00000089558 Annotated NA Included I1 1 7.75344740521133e-42 1.6711522156877e-40 2.18265653555167e-41 TRUE FALSE FALSE FALSE FALSE FALSE chr6_+_91263193_91263214 ENSMUST00000113498.8 1 chr6:91257826+91263338 1 21 CTTCATGCTTCTCCCTGCATG 1 72.7125389241 -0.12375999406 4.87343498889e-12 chr6_+_91263193_91263214|72.7125389241|-0.12375999406 4.64994709403754e-12 IN ENSMUST00000113498 Novel NA Excluded E1 6 0.00149764590327252 0.000160335372114047 0.00402893178277524 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_100599822_100599848 ENSMUST00000113312.8 1 chr6:100573788-100611735 1 26 CGGGCTCATGAGAACAGCTGTGTGAG 1 77.1895139754 -0.00519999712706 0 chr6_-_100599822_100599848|77.1895139754|-0.00519999712706 0 IN ENSMUST00000113312 Novel NA Excluded E1 6 0.00064541804822898 4.54617578036875e-05 0.00032443380068517 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_112759748_112759776 ENSMUST00000088373.10 0 chr6:112757430-112766867,chr6:112750411-112766867,chr6:112754673-112766867 0 28 GGGAGAGAGCAGAGTGCGGCACGACCAG 1 90.9013829778 3.75500006555 0 chr6_-_112759748_112759776|90.9013829778|3.75500006555 0 IN ENSMUST00000088373 Annotated NA Included I1 1 2.41087794050834e-06 -1.23726413610094e-05 -6.32286861083842e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_113376891_113376912 ENSMUST00000032410.13 3 chr6:113376064-113377315 3 21 GAGGCCGGCCTAATCATGCAG 1 72.0079523302 0.247280000448 1.08890674255e-12 chr6_-_113376891_113376912|72.0079523302|0.247280000448 1.05504494030129e-12 IN ENSMUST00000032410 Novel Alt5 Excluded E2 3 0.000253064004713767 -0.000488947752305687 0.00183547854009842 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_115619907_115619916 ENSMUST00000203759.1 0 chr6:115618996-115620208 0 9 GCCCCAGAA 1 78.5843585781 5.06469234366 0.00456331723898 chr6_-_115619907_115619916|78.5843585781|5.06469234366 0.00264513404547695 IN ENSMUST00000203759 Annotated Alt3 Excluded E1 6 -0.000261923485495048 -2.18673647172045e-05 -0.000926820339926632 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_115626938_115626966 ENSMUST00000130528.7 0 chr6:115626839-115632896,chr6:115626839-115630640,chr6:115626839-115631214 0 28 GATGCAATTCGAAGTCACAGTGAATCAG 1 84.1590413562 3.31821872341 0 chr6_-_115626938_115626966|84.1590413562|3.31821872341 0 IN ENSMUST00000130528 Annotated NA Included I1 1 -5.44478761160441e-140 -1.70847683786538e-140 -1.11310030762961e-139 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_115845542_115845559 ENSMUST00000203643.1 4 chr6:115845448-115848905 4 17 CAAGTACAACAAAGAAG 1 80.2435742079 2.24128572643 7.81255948823e-10 chr6_-_115845542_115845559|80.2435742079|2.24128572643 3.44125949958141e-10 IN ENSMUST00000203643 Novel Alt5 Excluded E2 3 -0.000472508273253567 5.75988560115667e-05 -0.000178635606189317 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_117935008_117935032 ENSMUST00000203082.2 0 chr6:117934500-117935154 0 24 ATAAAGACAGTCCCTTCTACTATG 1 85.4506165659 1.25232144419 2.22399876293e-12 chr6_-_117935008_117935032|85.4506165659|1.25232144419 4.37094804794924e-13 IN ENSMUST00000203082 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr6_-_118539846_118539875 ENSMUST00000112830.2 0 chr6:118539764-118540450 0 29 AGGCCCCCAGGAAATATGCAATCATGGAG 1 81.2329716419 0.575303032176 0 chr6_-_118539846_118539875|81.2329716419|0.575303032176 0 IN ENSMUST00000112830 Annotated NA Included I1 1 -2.9317851286103e-33 2.73230852257674e-32 1.08224711515133e-32 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_118705542_118705569 ENSMUST00000186889.6 0 chr6:118697793-118713256 0 27 CCATCGGATCTCCAAATCCAAATTCAG 1 89.8852963961 3.88812905646 0 chr6_-_118705542_118705569|89.8852963961|3.88812905646 0 IN ENSMUST00000186889 Annotated NA Included I1 1 2.873213711173e-08 -5.2225254344192e-09 -6.54143664114566e-08 TRUE FALSE TRUE FALSE FALSE FALSE chr6_-_119734080_119734092 ENSMUST00000184864.7 1099 chr6:119722308-119743287 1099 12 TCTCACCTCAAG 1 85.0333957887 4.01106254756 4.88081687222e-06 chr6_-_119734080_119734092|85.0333957887|4.01106254756 1.00685176940285e-06 IN ENSMUST00000184864 Annotated NA Neuronal N1 18 0.0713979075988454 0.0288874559480038 0.00640233339439064 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE TRUE chr6_-_119981117_119981132 ENSMUST00000060043.12 8 chr6:119972856-119990091 8 15 GATTGTATAAATGAG 1 82.1477568531 2.04789473038 6.26314411445e-08 chr6_-_119981117_119981132|82.1477568531|2.04789473038 1.98145027052732e-08 IN ENSMUST00000060043 Novel NA Excluded E1 6 -0.000966537911276536 0.00123830787924885 0.00218440666574462 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_122332653_122332677 ENSMUST00000161290.7 0 chr6:122325950-122333290,chr6:122325806-122333290,chr6:122332653-122333290 0 24 CCACAGCTGGGCAACCTATTGCAG 0 75.6758974865 3.33299996637 2.16360263039e-12 chr6_-_122332653_122332677|75.6758974865|3.33299996637 -Inf IN ENSMUST00000161290 Annotated Alt3 Excluded E4 11 0.000794302054277991 -0.00380249533388662 0.000372460711754179 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_122338471_122338480 ENSMUST00000160843.7 132 chr6:122337015-122339597,chr6:122337015-122340196 117,15 9 GATTCATGG 1 70.5103562352 2.25115390466 3.82803506809e-05 chr6_-_122338471_122338480|70.5103562352|2.25115390466 3.77909613589189e-05 IN ENSMUST00000160843 Missing in GENCODE NA Neuronal N4 13 0.0323339216294711 0.00332721719586728 0.0645997268564478 TRUE TRUE TRUE FALSE FALSE FALSE chr6_-_122588144_122588172 ENSMUST00000203197.2 36 chr6:122581750-122591086 36 28 GCCCTGTAGCTGTTGATCCCACTCTGAG 1 87.6449271647 0.893937506538 0 chr6_-_122588144_122588172|87.6449271647|0.893937506538 0 IN ENSMUST00000203197 Annotated Alt3 Included I3 5 -0.012675560038767 -0.00950469676807859 0.00293681987658094 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_12349709_12349715 ENSMUST00000119581.6 0 chr6:12348330-12351611,chr6:12348330-12351984 0 6 GCACAG 1 81.2827591593 2.19940004041 0.549727438408 chr6_-_12349709_12349715|81.2827591593|2.19940004041 0.201889864734501 RESCUED ENSMUST00000119581 Annotated NA Included I1 1 3.28868390498066e-06 -1.78066591811097e-05 -8.19978204328251e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_124711862_124711871 ENSMUST00000004379.7 4 chr6:124705842-124711875 4 9 TTTTGAACA 1 65.9728558593 0.247153842392 8.97009676829e-05 chr6_-_124711862_124711871|65.9728558593|0.247153842392 8.96539731524149e-05 IN ENSMUST00000004379 Novel NA Excluded E1 6 0.000158264982177226 4.16792764773275e-06 0.000142288040193395 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_125165284_125165311 ENSMUST00000183272.1 0 chr6:125163321-125165551 0 27 CCTCGTCCCGTAGACAAAATGGTGAAG 1 84.4560401253 1.69583870567 0 chr6_-_125165284_125165311|84.4560401253|1.69583870567 0 IN ENSMUST00000183272 Annotated Alt3 Excluded E1 6 -0.000841458601604738 0.000544800025314651 -0.00267456036586153 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_125309193_125309219 ENSMUST00000032489.7 0 chr6:125308146-125309458 0 26 GTACTCTGCTCAAGCGGCACCCAGAG 1 84.9829867905 1.75610000615 2.84661183514e-13 chr6_-_125309193_125309219|84.9829867905|1.75610000615 5.90638649100583e-14 IN ENSMUST00000032489 Annotated Alt3 Included I2 10 -0.00088098136221469 -0.000662747172852592 -0.00225835370080618 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_126928140_126928160 ENSMUST00000144954.4 0 chr6:126927690-126934713 0 20 TGTAGCCAGTGATGATGTAG 1 83.9826443891 1.34725001179 6.36555341771e-09 chr6_-_126928140_126928160|83.9826443891|1.34725001179 1.50862822234643e-09 IN ENSMUST00000144954 Annotated Alt5 Excluded E1 6 -0.000845555797626022 -0.000607143066651026 0.000227591873200599 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_127099063_127099093 ENSMUST00000039913.8 2 chr6:127092742-127101848 2 30 CCCAGCTGCTTCAGGATGATGGGGAATGTG 1 80.670255304 None 0 chr6_-_127099063_127099093|80.670255304|None 0 IN ENSMUST00000039913 Novel NA Excluded E1 6 0.000273968082023175 0.000131264668732779 0.00167847804365538 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_128522739_128522760 ENSMUST00000143664.1 331 chr6:128522184-128523776 331 21 TTCCCTGTCGTTTATATTGAG 1 93.6562347316 1.25116000086 1.39177558367e-12 chr6_-_128522739_128522760|93.6562347316|1.25116000086 2.68118860446975e-13 IN ENSMUST00000143664 Annotated NA Included I1 1 -7.59318622674527e-06 -9.95847391668885e-05 7.11587562366591e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_143068560_143068586 ENSMUST00000171349.7 1 chr6:143067141-143072542 1 26 TGAAGAGCTGTTCCTGGCTGCTTCTG 1 79.1422757032 4.22600000699 0 chr6_-_143068560_143068586|79.1422757032|4.22600000699 0 IN ENSMUST00000171349 Novel NA Excluded E2 3 0.00227309059999799 -0.0177926888892405 8.30509650021974e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_145208420_145208438 ENSMUST00000111728.7 0 chr6:145203028-145210806,chr6:145205576-145210806,chr6:145205323-145210806,chr6:145205323-145210403 0 18 GCTCCCAAATCAAAAAAG 1 83.1694712887 1.44849999994 6.99219502298e-08 chr6_-_145208420_145208438|83.1694712887|1.44849999994 1.87193045508849e-08 IN ENSMUST00000111728 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr6_-_146561593_146561617 ENSMUST00000032427.14 158 chr6:146560210-146561728 158 24 CCCACATTCAGTGTCTTTGAACAG 1 84.7899479486 4.22167855501 0 chr6_-_146561593_146561617|84.7899479486|4.22167855501 0 IN ENSMUST00000032427 Annotated NA Excluded E2 3 0.0062389339870085 0.00183277780781103 0.0090958337807409 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_22329578_22329608 ENSMUST00000165576.7 0 chr6:22328678-22339272 0 30 CTCGATCCGCGCTGGACTCAGCCATTCGTT 1 79.7830569349 1.62008822819 0 chr6_-_22329578_22329608|79.7830569349|1.62008822819 0 IN ENSMUST00000165576 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_23320932_23320947 ENSMUST00000166458.8 192 chr6:23314207-23321705 192 15 TTTAGGAATCAGTGG 1 77.4539195292 2.55521050096 2.72084431652e-08 chr6_-_23320932_23320947|77.4539195292|2.55521050096 1.85109628736413e-08 IN ENSMUST00000166458 Annotated NA Non-Neuronal NN2 24 -0.0583173323800256 0.158955565073247 0.0130109441684517 TRUE TRUE TRUE 13.5 -1 FALSE FALSE FALSE chr6_-_23354193_23354202 ENSMUST00000115361.8 1731 chr6:23344363-23355823 1731 9 GGAAGAGAG 1 81.9744327633 3.48992311038 0.000170559046609 chr6_-_23354193_23354202|81.9744327633|3.48992311038 5.55730202634885e-05 IN ENSMUST00000115361 Annotated NA Neuro-Muscular NM1 12 0.0590296425166886 -0.150041111923452 -0.00997180138118912 TRUE TRUE TRUE 13.5 1 12.5 1 FALSE FALSE TRUE chr6_-_23381056_23381077 ENSMUST00000115361.8 1099 chr6:23355927-23382880 1099 21 GGCCCGCAGAAAAGGAAACAG 1 83.3398260814 2.44732002258 2.39168684857e-11 chr6_-_23381056_23381077|83.3398260814|2.44732002258 6.23578966241212e-12 IN ENSMUST00000115361 Annotated NA Neuro-Muscular NM1 12 0.052251229790714 -0.130857453950482 -0.00377622477677501 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr6_-_24623333_24623351 ENSMUST00000031695.14 19 chr6:24619702-24624235 19 18 GTCCACCACAGTGGAGTG 1 82.5703292705 2.79536364295 2.56420662481e-10 chr6_-_24623333_24623351|82.5703292705|2.79536364295 7.55925322337703e-11 IN ENSMUST00000031695 Novel NA Excluded E3 2 -0.00108389690322376 -0.0567713697047115 -0.00951071401816099 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_24629924_24629948 ENSMUST00000031695.14 0 chr6:24626862-24633836 0 24 AAAAAAGACGAGATGCTCCAAATG 1 84.9557106887 3.14628578559 2.46771492129e-11 chr6_-_24629924_24629948|84.9557106887|3.14628578559 5.13900033638492e-12 IN ENSMUST00000031695 Annotated NA Included I1 1 -5.22191847976543e-141 -1.63854449581946e-141 -1.06753825509291e-140 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_27891220_27891249 ENSMUST00000115323.7 23 chr6:27762497-27981182 23 29 GAAGTCGATCTGGTGCGGTGGCTATGAAG 1 88.7186733539 0.0118181738212 0 chr6_-_27891220_27891249|88.7186733539|0.0118181738212 0 IN ENSMUST00000115323 Novel NA Excluded E1 6 0.000484997292692304 -0.000633286905712559 -0.00116885553049862 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_29201887_29201904 ENSMUST00000162739.7 136 chr6:29201219-29202446 136 17 CTATACCTTTCTGCCGT 1 75.0997847847 3.65814287322 2.74212652585e-10 chr6_-_29201887_29201904|75.0997847847|3.65814287322 2.35132913140035e-10 IN ENSMUST00000162739 Annotated NA Excluded E2 3 0.0050550784097661 0.00510904498586349 -0.0134647019733694 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_32893391_32893406 ENSMUST00000066379.10 4571 chr6:32892375-32968200 4571 15 GATATTGAAGACAAA 1 80.0397285054 1.60742107181 2.7578058337e-07 chr6_-_32893391_32893406|80.0397285054|1.60742107181 1.25838343856266e-07 IN ENSMUST00000066379 Annotated NA Neuronal N1 18 0.0651637469161475 0.0333825927704285 0.00245652986470189 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE TRUE chr6_-_3467513_3467538 ENSMUST00000201276.1 1 chr6:3467426-3467623 1 25 CTATAAGACAGAAGCTAGAAGGCAG 1 87.649312057 1.86544826884 0 chr6_-_3467513_3467538|87.649312057|1.86544826884 0 IN ENSMUST00000201276 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_-_36894775_36894801 ENSMUST00000101532.9 0 chr6:36865828-36913632 0 26 GTCCCCAGTCTCTTCAGAAGATCATG 1 86.9271858938 2.51616663883 1.06079589557e-11 chr6_-_36894775_36894801|86.9271858938|2.51616663883 1.81687997979907e-12 IN ENSMUST00000101532 Annotated NA Included I1 1 -6.6788078598591e-06 3.17315705056794e-05 1.41079303528192e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_4690468_4690495 ENSMUST00000004750.14 1128 chr6:4689767-4691428 1128 27 GGAAAAGAGAGACATGCAAACCCCAGA 1 84.7999606948 5.2175806607 0 chr6_-_4690468_4690495|84.7999606948|5.2175806607 0 IN ENSMUST00000004750 Annotated NA Included I3 5 -0.0345169331284569 -0.0187659892186247 -0.0072157942868194 TRUE TRUE TRUE 13.5 -1 12.5 -1 FALSE FALSE FALSE chr6_-_49263560_49263580 ENSMUST00000203820.2 2 chr6:49253108-49263837 2 20 CTTCCCATCTCTGCTCCGAG 1 82.5873509391 0.0918333298566 3.80317999316e-11 chr6_-_49263560_49263580|82.5873509391|0.0918333298566 1.11803899471852e-11 IN ENSMUST00000203820 Novel NA Excluded E3 2 0.00956053238129688 0.000454162554545651 -0.0118963686635407 TRUE FALSE TRUE FALSE FALSE FALSE chr6_-_50587177_50587207 ENSMUST00000031852.4 0 chr6:50584524-50589110 0 30 GCTACCCAAACCACCTAATTCAGCAGTAAA 1 85.1004466617 1.45549999566 0 chr6_-_50587177_50587207|85.1004466617|1.45549999566 0 IN ENSMUST00000031852 Annotated NA Included I1 1 -4.36829666939193e-07 2.83058555244192e-06 4.27218264836448e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_51461919_51461938 ENSMUST00000069949.12 29 chr6:51461433-51463410 29 19 TGGTGTTGGTAGTAAAATG 1 81.8060114664 2.51408695656 2.77680101135e-11 chr6_-_51461919_51461938|81.8060114664|2.51408695656 9.31266175285828e-12 IN ENSMUST00000069949 Novel Alt5 Excluded E2 3 0.00127499434060865 0.00127246109027524 -0.00495635593446987 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_51464427_51464430 ENSMUST00000069949.12 94 chr6:51464211-51465178 94 3 GAG 1 72.2049272172 3.21885715212 0.0569118648588 chr6_-_51464427_51464430|72.2049272172|3.21885715212 0.0549325277193914 IN ENSMUST00000069949 Novel Alt5 Excluded E1 6 5.03889683877306e-05 -7.58317696766012e-08 9.15883497920533e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_51464532_51464547 ENSMUST00000069949.12 26 chr6:51464211-51465178 26 15 GTGGCAATTTTGGAG 1 78.1900290104 3.82678946696 3.44880390912e-09 chr6_-_51464532_51464547|78.1900290104|3.82678946696 2.12065398574879e-09 IN ENSMUST00000069949 Novel Alt3 Excluded E1 6 0.00165451028303908 4.11217819652108e-05 0.00488728632866557 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_52003080_52003106 ENSMUST00000204778.2 0 chr6:51996124-52003649 0 26 CTATCTTCAGGAATTTCAAGACAAAG 1 88.2850178622 2.12933331306 1.66422431391e-12 chr6_-_52003080_52003106|88.2850178622|2.12933331306 2.64122057558325e-13 IN ENSMUST00000204778 Annotated NA Included I1 1 -1.34998812821924e-74 -6.90355928436424e-75 -8.01605033860331e-75 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_56345125_56345152 ENSMUST00000170774.7 13 chr6:56181797-56369540,chr6:56181797-56441985 5,8 27 GAGGAAATATAAGAAAACGTCCCAGAG 1 92.1800797242 2.54409677944 0 chr6_-_56345125_56345152|92.1800797242|2.54409677944 0 IN ENSMUST00000170774 Annotated Alt3 Excluded E4 11 -0.00107953279742777 -0.0211416186887194 0.0179021898158139 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_56703005_56703033 ENSMUST00000177144.1 50 chr6:56702168-56703317 50 28 ATATGGTGTTGGAAGATGTCACAGAATT 1 73.1658746412 4.55349995312 0 chr6_-_56703005_56703033|73.1658746412|4.55349995312 0 IN ENSMUST00000177144 Annotated Alt5 Excluded E3 2 -0.00584848474961444 -0.00120944495469303 -0.00654833193944351 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_57518207_57518236 ENSMUST00000042766.5 21 chr6:57515758-57522748 21 29 CTCTTTCTCTGCTTCCCCCTGTGTTGCAG 1 82.9319965696 2.14521210759 0 chr6_-_57518207_57518236|82.9319965696|2.14521210759 0 IN ENSMUST00000042766 Novel NA Excluded E1 6 -0.000351901630620533 0.000755763902122368 -0.00086936274152015 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_71632496_71632512 ENSMUST00000207023.1 1 chr6:71632271-71632837 1 16 TGTCCAGCTTTGAAAG 1 80.3897948295 -0.0599499979988 4.96584107168e-10 chr6_-_71632496_71632512|80.3897948295|-0.0599499979988 2.13237427715285e-10 IN ENSMUST00000207023 Novel Alt5 Excluded E2 3 0.000783017679524381 0.00195361630270623 -0.00344258297317375 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_71889340_71889369 ENSMUST00000082094.4 0 chr6:71888663-71889593 0 29 GTAGATTTTTTCAGTTGGCCATGAGTGTG 1 85.7895998157 1.79712119382 0 chr6_-_71889340_71889369|85.7895998157|1.79712119382 0 IN ENSMUST00000082094 Annotated NA Included I1 1 -2.0878905416375e-119 -3.90262868804096e-120 -4.09648460190746e-119 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_72597623_72597645 ENSMUST00000141833.7 3 chr6:72595020-72598321 3 22 GCCCCAGCGGTGCTCCAGTCCG 1 81.3532972301 0.0150384627677 7.27196081129e-13 chr6_-_72597623_72597645|81.3532972301|0.0150384627677 2.63788990650937e-13 IN ENSMUST00000141833 Annotated NA Excluded E2 3 -0.000675863032781049 -0.000257353040128954 -0.00408675517998182 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_76900493_76900500 ENSMUST00000160894.7 127 chr6:76882837-76902286,chr6:76882837-76915733 126,1 7 CTGCCAG 1 81.1364004309 2.17945454879 0.00462365871985 chr6_-_76900493_76900500|81.1364004309|2.17945454879 0.00174209554575822 IN ENSMUST00000160894 Novel NA Excluded E1 6 -0.000435093330098507 0.00303707419068547 0.000930855225215688 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_8162199_8162226 ENSMUST00000115537.1 0 chr6:8158174-8164612 0 27 GGAATCCCTGGGTACAAGGGTGACAAG 1 84.9122415594 1.39467745491 0 chr6_-_8162199_8162226|84.9122415594|1.39467745491 0 IN ENSMUST00000115537 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_-_8169615_8169636 ENSMUST00000115537.1 0 chr6:8168164-8175165 0 21 GGTGTCTTGTTTGAAAGGAAG 1 86.0401601584 1.44739999093 1.58615875989e-09 chr6_-_8169615_8169636|86.0401601584|1.44739999093 2.93152391250828e-10 IN ENSMUST00000115537 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr6_-_8257375_8257400 ENSMUST00000012627.4 10 chr6:8256803-8257686 10 25 CCTGGCCTTCAAGAGCTGGCCCCAG 1 73.523985689 -0.641551722162 0 chr6_-_8257375_8257400|73.523985689|-0.641551722162 0 IN ENSMUST00000012627 Novel NA Excluded E1 6 1.62252801896563e-05 0.000113391734352752 -4.22144635003578e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_83052697_83052726 ENSMUST00000122955.7 23 chr6:83052542-83053000,chr6:83052542-83053037 11,12 29 GGAGTTTCTGCATCGCGGGGAAAAGAAAA 1 76.103717964 2.07672729894 0 chr6_-_83052697_83052726|76.103717964|2.07672729894 0 IN ENSMUST00000122955 Annotated Alt5 Excluded E3 2 0.00255380680042474 0.000766192299124246 0.00443094729818778 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_84624301_84624313 ENSMUST00000160197.5 142 chr6:84621511-84625124 142 12 GCTATCTAGAGA 1 85.473438722 2.7680625394 8.37491474615e-07 chr6_-_84624301_84624313|85.473438722|2.7680625394 1.64177181405378e-07 IN ENSMUST00000160197 Missing in GENCODE NA Excluded E1 6 0.000733847989729163 -0.000590196681039163 0.00343788552539771 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_85287049_85287075 ENSMUST00000045846.11 0 chr6:85269963-85289176 0 26 GTTACATTCCTTTCGGGACGCCAATT 1 79.1616797148 2.42823331133 4.25948165628e-12 chr6_-_85287049_85287075|79.1616797148|2.42823331133 2.25308660617429e-12 IN ENSMUST00000045846 Annotated NA Included I1 1 9.96686943578575e-08 -8.66783862386096e-07 -2.10341935331482e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_85289761_85289788 ENSMUST00000045846.11 0 chr6:85289231-85299539 0 27 CTCTGGAGTGCACAGAAAATCAAACAG 1 87.3865983121 2.74525806644 0 chr6_-_85289761_85289788|87.3865983121|2.74525806644 0 IN ENSMUST00000045846 Annotated NA Included I1 1 6.48899767991697e-16 -8.86184551149835e-15 -1.78151623913041e-15 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_85910995_85911020 ENSMUST00000172982.1 0 chr6:85910277-85915533 0 25 GGTTCAAGGAAGGTGTGCAAGGCAG 1 83.0696890935 -0.00444827906402 4.64250859977e-12 chr6_-_85910995_85911020|83.0696890935|-0.00444827906402 1.26254562360373e-12 IN ENSMUST00000172982 Annotated Alt3 Excluded E4 11 -0.0034988073920407 -0.00244859378705169 0.00127556801435045 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_86663070_86663100 ENSMUST00000001184.9 0 chr6:86653199-86668537,chr6:86658133-86668537 0 30 ATCAACTCACAATGAAATGGAAAAGAACAG 1 89.121565546 3.71308827619 0 chr6_-_86663070_86663100|89.121565546|3.71308827619 0 IN ENSMUST00000001184 Annotated NA Included I1 1 -3.57287598845633e-102 2.80758154971754e-102 -3.55500215085996e-102 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_86684228_86684242 ENSMUST00000001186.10 1 chr6:86682976-86684446 1 14 TCCCCGTAACCATC 1 78.6595922817 -0.199277777018 2.11293806895e-08 chr6_-_86684228_86684242|78.6595922817|-0.199277777018 1.21063919999997e-08 IN ENSMUST00000001186 Novel NA Excluded E1 6 -0.000153696991344457 0.000161133599713274 0.000435906450208299 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_87270754_87270780 ENSMUST00000042025.11 43 chr6:87269303-87282686 43 26 GACGCCTAGATTTCTCCCTGGAATGG 1 76.5491125375 1.33169998849 0 chr6_-_87270754_87270780|76.5491125375|1.33169998849 0 IN ENSMUST00000042025 Annotated NA Neuronal N6 15 0.0169828966730433 0.00179801221481236 0.0312642853824708 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_87835727_87835750 ENSMUST00000089497.6 0 chr6:87834994-87838643 0 23 GCCCGAAATGCAGAAAAAGCCAT 1 84.7323228677 4.33262961077 5.14717157785e-11 chr6_-_87835727_87835750|84.7323228677|4.33262961077 1.10225162330835e-11 IN ENSMUST00000089497 Annotated NA Included I1 1 1.24975195954259e-112 -3.49639714186205e-114 1.29629801496554e-112 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_87845388_87845391 ENSMUST00000204653.2 3 chr6:87845320-87845464 3 3 CAT 1 62.5193561058 0.106571427413 0.00832720672684 chr6_-_87845388_87845391|62.5193561058|0.106571427413 0.00832696572236447 IN ENSMUST00000204653 Novel NA Excluded E4 11 -0.00173720464128353 0.000528329074473075 0.00490216732098874 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_88840872_88840900 ENSMUST00000203137.2 0 chr6:88840765-88841768 0 28 GTACCTGCTGGAGCAGCGAGACGTGGAG 1 78.5070187452 3.68774997076 0 chr6_-_88840872_88840900|78.5070187452|3.68774997076 0 IN ENSMUST00000203137 Annotated Alt3 Excluded E2 3 0.00164414307465 -0.00199870725032715 0.00678896480812817 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_88848503_88848519 ENSMUST00000038409.11 36 chr6:88845689-88848734 36 16 GCTGACCTCAAACATA 1 82.5844506954 0.0916500017047 2.75122147286e-09 chr6_-_88848503_88848519|82.5844506954|0.0916500017047 8.09172950866355e-10 IN ENSMUST00000038409 Novel NA Excluded E1 6 -0.000380728362396873 0.000460997253082188 -1.0855239461195e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_88849959_88849988 ENSMUST00000142266.1 0 chr6:88849854-88865016 0 29 ACTACGTCTTCCCAGACCTGACTGAGAAG 1 73.0973391196 1.49475758432 0 chr6_-_88849959_88849988|73.0973391196|1.49475758432 0 IN ENSMUST00000142266 Annotated Alt3 Excluded E2 3 -0.000820707821154276 0.000869978895215491 -0.00393722608574783 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_90671601_90671631 ENSMUST00000101153.9 0 chr6:90670534-90671979 0 30 ATTGGATCCCTGCATCATGGTCTTGGCTGT 1 82.4057749653 3.85032342512 0 chr6_-_90671601_90671631|82.4057749653|3.85032342512 0 IN ENSMUST00000101153 Annotated NA Included I1 1 -3.10650463725646e-43 3.95347191783136e-43 7.4667013533437e-43 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_90873439_90873469 ENSMUST00000212100.1 0 chr6:90787162-90988081 0 30 GTCTGAAGAAGAAAGTTCTCGCAGCATCAG 1 90.1073376753 1.24479411937 0 chr6_-_90873439_90873469|90.1073376753|1.24479411937 0 IN ENSMUST00000212100 Annotated NA Included I1 1 -4.02641195528759e-06 2.38641407371395e-06 8.28797085777346e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr6_-_97353181_97353204 ENSMUST00000113355.8 0 chr6:97329564-97354004 0 23 GAAAGCAAGGGAGATTATACCAG 1 88.4831666574 2.82844448945 3.46929596162e-10 chr6_-_97353181_97353204|88.4831666574|2.82844448945 5.46707124016166e-11 IN ENSMUST00000113355 Annotated Alt3 Included I2 10 -0.000660867172975661 0.000235277932672982 -0.00525147820372204 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_100629665_100629693 ENSMUST00000032946.9 1 chr7:100628457+100629837 1 28 ATCAGGCTGCAGCTGTGGGATACTGCGG 1 79.2806587614 4.93246875238 0 chr7_+_100629665_100629693|79.2806587614|4.93246875238 0 IN ENSMUST00000032946 Novel Alt3 Excluded E1 6 -0.00169836507215982 -0.00150036268258658 -0.00197956112670722 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_100818735_100818762 ENSMUST00000208406.1 381 chr7:100813000+100824131 381 27 AGTTTCAGTTCCTGCATTCAGCTTATG 1 79.6057622733 3.11464513694 0 chr7_+_100818735_100818762|79.6057622733|3.11464513694 0 IN ENSMUST00000208406 Annotated NA Neuro-Muscular NM2 9 0.045129154890818 -0.0402056850152547 0.0112382931365442 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE TRUE FALSE chr7_+_101345672_101345687 ENSMUST00000167888.8 1 chr7:101344034+101345891 1 15 TTCCTGGCCCCCAAG 1 82.6464951953 3.25136843559 6.68660504743e-09 chr7_+_101345672_101345687|82.6464951953|3.25136843559 1.94669047548501e-09 IN ENSMUST00000167888 Novel Alt5 Excluded E2 3 -0.0004725764036217 -6.52502622418496e-05 -0.000673943495411606 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_101881378_101881402 ENSMUST00000210984.1 1 chr7:101879301+101897732 1 24 TTGCAGATGGTTGTGAAATGCACG 1 75.5378251687 0.157250002027 0 chr7_+_101881378_101881402|75.5378251687|0.157250002027 0 IN ENSMUST00000210984 Novel Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_102002294_102002309 ENSMUST00000084852.12 1 chr7:102001659+102007485 1 15 GTGGAGCAACTAGAG 1 75.7840696724 2.77968425029 2.11257427107e-08 chr7_+_102002294_102002309|75.7840696724|2.77968425029 1.71880102373123e-08 IN ENSMUST00000084852 Novel Alt3 Excluded E2 3 -0.00149226549108745 -0.00245709521698845 0.00859902164198592 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_102222781_102222801 ENSMUST00000140631.1 206 chr7:102210591+102223378,chr7:102210591+102226270 189,17 20 GTGATGGCATGCAGCCACAG 1 87.699513895 1.07641666751 4.53432846825e-11 chr7_+_102222781_102222801|87.699513895|1.07641666751 7.39075467492967e-12 IN ENSMUST00000140631 Annotated NA Excluded E4 11 -0.0156738781870963 0.00611373917253011 -0.00664955778172849 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_102226421_102226445 ENSMUST00000150891.7 0 chr7:102223490+102236447,chr7:102223150+102236093 0 24 GAGACAACATCTACACACTGTGGG 1 79.8844964122 3.61946425574 4.46753745109e-11 chr7_+_102226421_102226445|79.8844964122|3.61946425574 2.09365857983812e-11 IN ENSMUST00000150891 Annotated Alt5 Excluded E3 2 -0.00181633871198755 -0.00111325628072834 -0.00463393754027493 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_104230727_104230750 ENSMUST00000098180.9 0 chr7:104228376+104231788 0 23 GATGTGGGTGATGTTACAAAAAG 1 89.5750738967 1.4168888921 4.8103743211e-11 chr7_+_104230727_104230750|89.5750738967|1.4168888921 7.43960448801317e-12 IN ENSMUST00000098180 Annotated NA Included I1 1 1.65513354566465e-05 -2.34991060519991e-07 -3.35493134577497e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_104232112_104232139 ENSMUST00000098180.9 0 chr7:104231889+104232366 0 27 AGCTGACAGATGTCCAAAGCTATTGGG 1 86.8899315725 1.57393548373 0 chr7_+_104232112_104232139|86.8899315725|1.57393548373 0 IN ENSMUST00000098180 Annotated NA Included I1 1 3.05559328806231e-05 5.60846572805491e-07 -8.10948826693964e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_104259412_104259435 ENSMUST00000106849.8 0 chr7:104249625+104260117 0 23 GATATGAGCGGTATTTTGAAATG 1 87.9139592978 1.03274074583 1.48716594595e-10 chr7_+_104259412_104259435|87.9139592978|1.03274074583 2.39772646182246e-11 IN ENSMUST00000106849 Annotated NA Included I1 1 -4.19979839118053e-09 -1.11816763298344e-08 5.23470524039493e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_104260477_104260504 ENSMUST00000106849.8 0 chr7:104260218+104260890 0 27 AGCTAACAGCTGTCCGGGCCTACTGGG 1 85.4577981218 0.902290319964 0 chr7_+_104260477_104260504|85.4577981218|0.902290319964 0 IN ENSMUST00000106849 Annotated NA Included I1 1 1.44829755881703e-11 1.62908462249256e-11 -6.75598754979793e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_112333828_112333853 ENSMUST00000050149.11 2 chr7:112332039+112346721 2 25 GACTGCCGCCGGGTCTCAGGCATAG 1 87.7873498481 1.09986207242 0 chr7_+_112333828_112333853|87.7873498481|1.09986207242 0 IN ENSMUST00000050149 Novel Alt3 Excluded E2 3 0.003528627448074 -0.00403068026905778 0.00093001072312348 TRUE TRUE FALSE FALSE FALSE FALSE chr7_+_112350136_112350148 ENSMUST00000050149.11 128 chr7:112349482+112351324 128 12 GTGTTTCCCTGT 1 80.3822334798 -0.0958750005811 4.2514866494e-07 chr7_+_112350136_112350148|80.3822334798|-0.0958750005811 1.82803299719758e-07 IN ENSMUST00000050149 Novel NA Excluded E1 6 5.84823257649155e-05 -8.95921339506754e-05 0.000242838562145205 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_112575354_112575374 ENSMUST00000106643.7 0 chr7:112572929+112576399 0 20 GGCCCTTTCCGGAAGGCATG 1 91.362590785 3.73675003182 3.13411874231e-09 chr7_+_112575354_112575374|91.362590785|3.73675003182 5.04975283810438e-10 IN ENSMUST00000106643 Annotated NA Included I1 1 1.31676892121036e-89 -4.29984633700759e-90 -8.74309591254679e-90 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_112856052_112856064 ENSMUST00000084705.11 95 chr7:112839480+112856797,chr7:112842102+112856797 8,87 12 GTAACAAGCATG 1 87.0181637777 4.43281247467 3.4177151782e-06 chr7_+_112856052_112856064|87.0181637777|4.43281247467 5.81476235161915e-07 IN ENSMUST00000084705 Annotated NA Non-Neuronal NN1 23 -0.0329781907109709 -0.0173505279997404 0.0446040353888874 TRUE FALSE TRUE FALSE FALSE FALSE chr7_+_113281401_113281422 ENSMUST00000047321.8 196 chr7:113280802+113283256 196 21 ACTTGATGACTTTGCTTTTGA 1 81.9186375981 3.71700001121 2.15738538145e-12 chr7_+_113281401_113281422|81.9186375981|3.71700001121 7.096545573404e-13 IN ENSMUST00000047321 Annotated NA Excluded E3 2 0.0145426401626617 0.00254316968858604 0.00753422398496256 TRUE FALSE TRUE FALSE FALSE FALSE chr7_+_113554267_113554288 ENSMUST00000033018.14 1 chr7:113553813+113561375 1 21 GTTGACAGGTCAGAAACCGTG 1 82.6126590184 4.2026400578 6.69420074928e-12 chr7_+_113554267_113554288|82.6126590184|4.2026400578 1.95976568306833e-12 IN ENSMUST00000033018 Novel Alt5 Excluded E1 6 -0.00104250222300216 -0.000416712582556167 0.00148768538216236 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_114517320_114517333 ENSMUST00000032909.8 224 chr7:114508912+114518280 224 13 CTGTGCCCCTAAG 1 80.6876567664 0.165176467422 5.44299689098e-07 chr7_+_114517320_114517333|80.6876567664|0.165176467422 2.21864577820696e-07 IN ENSMUST00000032909 Missing in GENCODE NA Neuronal N4 13 0.0291098392375537 0.0123252207928167 0.0181478902978094 TRUE TRUE TRUE 15.5 1 FALSE FALSE FALSE chr7_+_118749666_118749691 ENSMUST00000059390.12 0 chr7:118748248+118752816 0 25 AATCTGTTTATGGGATCAGAAAAAG 1 87.36688356 4.09372409998 4.03144184702e-12 chr7_+_118749666_118749691|87.36688356|4.09372409998 6.70019595361282e-13 IN ENSMUST00000059390 Annotated NA Included I1 1 3.86931581090578e-116 2.5858048291494e-117 5.93359348073335e-116 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_120648273_120648278 ENSMUST00000033176.6 1 chr7:120645248+120649345 1 5 TTACA 1 56.0749109478 -0.0926666648852 0.0154735473732 chr7_+_120648273_120648278|56.0749109478|-0.0926666648852 0.0154735466711822 IN ENSMUST00000033176 Novel NA Excluded E1 6 0.000278216763956132 -8.3446497939351e-05 0.000654780708901804 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_123152163_123152185 ENSMUST00000206888.1 233 chr7:123143837+123162493 233 22 GCCACTGAACAAAAAATCAAAG 1 86.6979630587 3.25973077004 4.13669098975e-12 chr7_+_123152163_123152185|86.6979630587|3.25973077004 7.21200876796502e-13 IN ENSMUST00000206888 Annotated NA Included I1 1 -0.002135173670234 -0.000430259876853436 -0.000772241576820214 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_123408422_123408435 ENSMUST00000033025.6 1 chr7:123404484+123410723 1 13 GGACTCCCAGAAG 1 77.408413324 0.207705881447 3.62168000589e-07 chr7_+_123408422_123408435|77.408413324|0.207705881447 2.47837789069116e-07 IN ENSMUST00000033025 Novel Alt5 Excluded E1 6 4.65443638533502e-05 1.48367769018336e-06 0.000288195673421209 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_126444417_126444429 ENSMUST00000151304.7 0 chr7:126444307+126444522 0 12 ACGTGCTGGAGG 1 82.9638992506 1.67025001609 1.18612514907e-05 chr7_+_126444417_126444429|82.9638992506|1.67025001609 3.28037294428096e-06 IN ENSMUST00000151304 Annotated NA Included I1 1 -3.11568255444625e-68 3.51661798277498e-68 5.60362287101446e-68 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_126671733_126671747 ENSMUST00000206359.1 2 chr7:126671667+126671768 2 14 GCCCCCACCCCTCT 1 69.6242972476 3.38011114382 1.20780896395e-09 chr7_+_126671733_126671747|69.6242972476|3.38011114382 1.19905252393693e-09 IN ENSMUST00000206359 Novel Alt3 Excluded E4 11 -7.10683893290421e-06 -0.00160410615691854 0.00168297257455221 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_126979393_126979403 ENSMUST00000206450.1 1 chr7:126978996+126979534 1 10 GGACCACTAG 1 82.3244990873 3.28678574732 1.9520502148e-06 chr7_+_126979393_126979403|82.3244990873|3.28678574732 5.99454372030017e-07 IN ENSMUST00000206450 Novel Alt5 Excluded E1 6 -8.37038662127135e-05 5.29752844905258e-05 -0.000136244184873272 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_127211748_127211763 ENSMUST00000206204.1 0 chr7:127208951+127212860,chr7:127209398+127212860 0 15 GAGATCTAAGACATG 1 82.6598225058 1.40126315583 3.20653848496e-06 chr7_+_127211748_127211763|82.6598225058|1.40126315583 9.31493791767046e-07 IN ENSMUST00000206204 Annotated Alt5 Excluded E4 11 6.3419344497543e-05 0.00773060661631223 -0.00286106476815339 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_127480988_127481018 ENSMUST00000205432.2 0 chr7:127480902+127482782,chr7:127480115+127482782 0 30 TGTGACGCAGAAAGTGATCTGGATGAGAGG 1 85.1361818077 3.05547055251 0 chr7_+_127480988_127481018|85.1361818077|3.05547055251 0 IN ENSMUST00000205432 Annotated NA Included I1 1 0.000536679113554184 0.0014240835563002 -0.000659575104250801 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_127486859_127486889 ENSMUST00000205432.2 0 chr7:127485996+127487264,chr7:127483221+127487264 0 30 ATCCCTGATCATTTCCGGCCACCTTTGAGG 1 82.6289210993 2.10873528877 0 chr7_+_127486859_127486889|82.6289210993|2.10873528877 0 IN ENSMUST00000205432 Annotated Alt5_3 Included I2 10 -0.00281927220469665 -0.00397139261271388 -0.00384510674137701 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_127750147_127750154 ENSMUST00000188580.2 14 chr7:127750067+127750864 14 7 GATGCAG 1 87.0094975732 1.99472726475 0.000187379467787 chr7_+_127750147_127750154|87.0094975732|1.99472726475 3.18999112199903e-05 IN ENSMUST00000188580 Novel Alt3 Excluded E1 6 -0.000196365168941553 0.000651798743762754 -0.000512612932093715 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_127905775_127905796 ENSMUST00000206140.1 0 chr7:127905480+127905872 0 21 AAGCTGACAGACTTCCCTCCG 1 78.5583254379 2.74600001916 8.34461388877e-11 chr7_+_127905775_127905796|78.5583254379|2.74600001916 4.85630424762462e-11 IN ENSMUST00000206140 Annotated Alt5 Excluded E3 2 7.76279799698547e-06 -0.000667464072602565 0.00348053065243416 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_127969561_127969586 ENSMUST00000106251.9 0 chr7:127967577+127969716,chr7:127967577+127971837 0 25 ACTATACCCAACAAGCAACTCAAAG 1 87.2224583274 2.5856896441 1.87405646557e-12 chr7_+_127969561_127969586|87.2224583274|2.5856896441 3.14415160573844e-13 IN ENSMUST00000106251 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_127976072_127976075 ENSMUST00000106251.9 1 chr7:127975920+127977217 1 3 TAC 1 69.8709560719 -0.48499998876 0.0757177184404 chr7_+_127976072_127976075|69.8709560719|-0.48499998876 0.0750730174318588 IN ENSMUST00000106251 Novel NA Excluded E3 2 -5.66265557799949e-05 0.00252292724289391 -0.00025699373715796 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_128008451_128008474 ENSMUST00000106248.7 0 chr7:128008017+128009071 0 23 AAATTCTGCCTGGTAACCAGCAG 1 89.9246568468 2.87159260556 1.45945477925e-11 chr7_+_128008451_128008474|89.9246568468|2.87159260556 2.25952589971712e-12 IN ENSMUST00000106248 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_128689227_128689246 ENSMUST00000202419.2 0 chr7:128687607+128690626,chr7:128688746+128690626,chr7:128685284+128690626 0 19 CAGCAGTTTTCAGAATGCA 1 71.7558382856 0.599304350174 6.75572664477e-09 chr7_+_128689227_128689246|71.7558382856|0.599304350174 6.5734566678799e-09 IN ENSMUST00000202419 Annotated Alt5 Excluded E1 6 0.00239220116258377 -0.00165300562807575 0.00411123282960772 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_129624704_129624729 ENSMUST00000143422.7 1 chr7:129624357+129625155 1 25 AGGAATACCCACACATAGAAGTTGG 1 82.4959587348 4.50193103095 0 chr7_+_129624704_129624729|82.4959587348|4.50193103095 0 IN ENSMUST00000143422 Novel Alt3 Excluded E2 3 -0.000720201500281704 0.000744916665382773 -0.00178836265803702 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_130755896_130755905 ENSMUST00000208722.1 868 chr7:130753661+130759164,chr7:130753661+130759166 851,17 9 GCAAGCCTG 1 75.6385050583 2.94723077233 8.18040294316e-05 chr7_+_130755896_130755905|75.6385050583|2.94723077233 6.73696765790543e-05 IN ENSMUST00000208722 Novel NA Neuronal N1 18 0.0811986468096163 0.0501076171231112 -0.0623771282684814 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr7_+_131034680_131034707 ENSMUST00000213064.1 0 chr7:131032145+131040886,chr7:131032145+131037821,chr7:131032145+131039016 0 27 CATCTCAAACAGCTGTTCCCACAGATG 1 88.5992454602 -0.17248387106 0 chr7_+_131034680_131034707|88.5992454602|-0.17248387106 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131043659_131043686 ENSMUST00000213064.1 0 chr7:131041210+131044492 0 27 ATTCTCAAACAAGCAGTCCCACACCTG 1 88.3795174706 0.134419348451 0 chr7_+_131043659_131043686|88.3795174706|0.134419348451 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131044492_131044522 ENSMUST00000213064.1 0 chr7:131043686+131046555 0 30 GCTGGTGGAATCCAGGAGGGACAAATAACG 1 85.1948081632 0.178088230245 0 chr7_+_131044492_131044522|85.1948081632|0.178088230245 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131053193_131053220 ENSMUST00000213064.1 0 chr7:131050233+131054062 0 27 CTTCTCAATCAAGCAGTCCCACACCTG 1 90.3212306508 0.20022580316 0 chr7_+_131053193_131053220|90.3212306508|0.20022580316 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131054062_131054092 ENSMUST00000213064.1 0 chr7:131053220+131056146 0 30 GTTGGTGGAATCCAGGAGGGACAAATAATG 1 86.8026480468 0.0632647061173 0 chr7_+_131054062_131054092|86.8026480468|0.0632647061173 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131061331_131061358 ENSMUST00000084509.4 0 chr7:131058326+131069732,chr7:131058326+131063393,chr7:131058326+131071186 0 27 CTTCTCAATCAAGCAGTCCCACACCTG 1 86.7598694517 0.20022580316 0 chr7_+_131061331_131061358|86.7598694517|0.20022580316 0 IN ENSMUST00000084509 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131069732_131069759 ENSMUST00000213064.1 0 chr7:131058326+131071186,chr7:131066738+131071186 0 27 CTTCTCAATCAAGCAGTCCCACACCTG 1 87.7156723958 0.109580643235 0 chr7_+_131069732_131069759|87.7156723958|0.109580643235 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131077483_131077510 ENSMUST00000084509.4 0 chr7:131071219+131081179,chr7:131074523+131079512 0 27 CTTCTCAATCAAGCAGTCCCACACCTG 1 87.7156723958 0.0571290317082 0 chr7_+_131077483_131077510|87.7156723958|0.0571290317082 0 IN ENSMUST00000084509 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131083783_131083813 ENSMUST00000213064.1 0 chr7:131082810+131085376 0 30 ATGCCCAAATCCAGAGCACAACCAGGCCAG 1 88.9478271357 -0.0555882308194 0 chr7_+_131083783_131083813|88.9478271357|-0.0555882308194 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131086152_131086179 ENSMUST00000213064.1 0 chr7:131085415+131088059 0 27 AATTGTTGACTACAACTCCTTATTTTG 1 86.5604086416 0.155419348709 0 chr7_+_131086152_131086179|86.5604086416|0.155419348709 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131088059_131088080 ENSMUST00000213064.1 0 chr7:131086179+131088712 0 21 ATTGGTGGACAACTACTTCTG 1 89.4032689821 0.112880004644 5.70253178012e-10 chr7_+_131088059_131088080|89.4032689821|0.112880004644 8.82602879670458e-11 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131096013_131096043 ENSMUST00000213064.1 0 chr7:131094906+131097520 0 30 CTCCTCCAGTGCCAATCCCAACCACAGATG 1 87.6489322632 0 0 chr7_+_131096013_131096043|87.6489322632|0 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131104848_131104875 ENSMUST00000213064.1 0 chr7:131103742+131106152 0 27 GTCCTCCATCATTCCCAAACATAACTG 1 90.5137861187 0.127935479365 0 chr7_+_131104848_131104875|90.5137861187|0.127935479365 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131107884_131107911 ENSMUST00000213064.1 0 chr7:131106476+131108454 0 27 TCCCTGAGGTGACTTCTCCCAGTCCAG 1 91.3532340463 0.0487096650947 0 chr7_+_131107884_131107911|91.3532340463|0.0487096650947 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_131108454_131108481 ENSMUST00000213064.1 0 chr7:131107911+131109484 0 27 GTTGGTGGACTACAAGTCCTTCCTATG 1 89.1896867471 0.278000002426 0 chr7_+_131108454_131108481|89.1896867471|0.278000002426 0 IN ENSMUST00000213064 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_135601464_135601487 ENSMUST00000209256.1 429 chr7:135538116+135643857 429 23 ACTATAGCCCTCATTTCCCCTTG 1 87.6885689276 1.17622220737 0 chr7_+_135601464_135601487|87.6885689276|1.17622220737 0 IN ENSMUST00000209256 Annotated NA Included I2 10 0.000625764470035163 -0.00149774331189996 0.00526331756223515 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_137452516_137452541 ENSMUST00000064404.7 1 chr7:137445087+137452696 1 25 ACTCCGTGGATGACATGCCAGCCCA 1 78.4329589498 1.69955172043 0 chr7_+_137452516_137452541|78.4329589498|1.69955172043 0 IN ENSMUST00000064404 Novel Alt5 Excluded E1 6 0.00223458561213408 -0.000170106617425676 0.00350742217912327 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_138872873_138872903 ENSMUST00000172764.1 9 chr7:138870502+138873000 9 30 GTTCCAATATTGAAGCCCATGGACCTTATG 1 75.8581294678 3.94120589425 0 chr7_+_138872873_138872903|75.8581294678|3.94120589425 0 IN ENSMUST00000172764 Novel Alt3 Excluded E3 2 -0.00152249242586948 -0.0014072797341386 -0.00247724400530654 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_139094737_139094765 ENSMUST00000026551.14 1 chr7:139094462+139094856 1 28 GGACGCTCCAGTGCCTACAGTCTCCTAG 1 78.0108699064 -0.703531257401 0 chr7_+_139094737_139094765|78.0108699064|-0.703531257401 0 IN ENSMUST00000026551 Novel NA Excluded E1 6 -0.00021536164363266 -0.00123327678525252 -0.00144336103182478 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_140037117_140037134 ENSMUST00000168194.2 327 chr7:140036893+140037219 327 17 GCTCAGCTGGAATATGG 1 87.1912461805 -0.320047622103 6.93489710102e-11 chr7_+_140037117_140037134|87.1912461805|-0.320047622103 1.16572307362617e-11 IN ENSMUST00000168194 Missing in GENCODE NA Excluded E2 3 0.0049028356156659 0.00138413808544292 0.00289471357829784 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_140037397_140037421 ENSMUST00000211789.1 3 chr7:140036893+140037515 3 24 ATCCTGGCCCAGAGGCAAGACATG 1 81.1094005428 2.74246426406 0 chr7_+_140037397_140037421|81.1094005428|2.74246426406 0 IN ENSMUST00000211789 Novel Alt5 Excluded E3 2 -0.00124813186008816 -0.000189783490878045 -0.00483944973472007 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_140147907_140147920 ENSMUST00000036977.8 5 chr7:140147334+140149747 5 13 AATGCAGGAGAAG 1 75.1335173814 0.169764698428 1.39465545779e-07 chr7_+_140147907_140147920|75.1335173814|0.169764698428 1.19312014490447e-07 IN ENSMUST00000036977 Novel NA Excluded E1 6 -1.77173580119567e-92 -6.2428397325609e-93 5.20696043815334e-93 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_140229034_140229058 ENSMUST00000209398.1 7 chr7:140228818+140229714 7 24 GTGTCTCCACGACCACTGCATTGT 1 85.9558114031 -0.452250003948 0 chr7_+_140229034_140229058|85.9558114031|-0.452250003948 0 IN ENSMUST00000209398 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_140298359_140298383 ENSMUST00000210212.1 0 chr7:140298104+140298978 0 24 GTATCCCTGGAACCATGGCATCCG 1 91.2677113828 0.25514286211 3.00559577227e-12 chr7_+_140298359_140298383|91.2677113828|0.25514286211 4.82169859594705e-13 IN ENSMUST00000210212 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_141332909_141332929 ENSMUST00000126510.7 0 chr7:141328266+141333637,chr7:141331561+141333637 0 20 GGAGAGGCTCCATCAAGGTG 1 79.873171651 0.472333330971 1.86628312804e-09 chr7_+_141332909_141332929|79.873171651|0.472333330971 8.76306915920111e-10 IN ENSMUST00000126510 Annotated Alt3 Excluded E4 11 0.00284739015576026 -0.00526077728742278 0.00803248971796921 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_141610107_141610110 ENSMUST00000003038.11 4 chr7:141609915+141611335 4 3 GAG 1 67.4626143909 0.264285715563 0.0826308342012 chr7_+_141610107_141610110|67.4626143909|0.264285715563 0.0824972494662459 IN ENSMUST00000003038 Novel NA Excluded E4 11 -0.000838194034442184 0.00131182474512702 -0.00211367158973257 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_141611104_141611107 ENSMUST00000003038.11 4 chr7:141609915+141611335 4 3 CAG 1 65.8000841968 -0.11428571519 0.0826308342012 chr7_+_141611104_141611107|65.8000841968|-0.11428571519 0.0825930288413795 IN ENSMUST00000003038 Novel NA Excluded E4 11 -0.000731771852439192 0.00278127378301104 -0.00279526833983094 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_142442468_142442498 ENSMUST00000105971.7 0 chr7:142441868+142442690,chr7:142441893+142442690 0 30 GATCAGAGCTTGAGATCTCAGGATGGGAGA 1 82.8186453769 1.08723526982 0 chr7_+_142442468_142442498|82.8186453769|1.08723526982 0 IN ENSMUST00000105971 Annotated Alt5 Included I1 1 -5.41496109269215e-08 1.69790238110526e-08 -2.28260013578881e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_142442690_142442697 ENSMUST00000105971.7 0 chr7:142442498+142443170 0 7 TGAGGAG 1 80.3009576018 2.61554549702 0.0395329685024 chr7_+_142442690_142442697|80.3009576018|2.61554549702 0.0172405382318507 IN ENSMUST00000105971 Annotated NA Included I1 1 5.62065752336109e-06 -5.90964435194674e-07 2.26812496345171e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_142501828_142501842 ENSMUST00000074187.12 0 chr7:142501654+142502739,chr7:142501654+142504047 0 14 TGAACAAGTTGAGG 1 77.639327968 1.95588889056 3.97487685599e-06 chr7_+_142501828_142501842|77.639327968|1.95588889056 2.63939425426685e-06 IN ENSMUST00000074187 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_142502739_142502757 ENSMUST00000078497.14 0 chr7:142501842+142508334,chr7:142501842+142504047,chr7:142501842+142505515,chr7:142501654+142504047,chr7:142501842+142504249 0 18 AACAATACGAAGAGGAAG 1 81.9226772233 1.44731818072 3.17668303884e-08 chr7_+_142502739_142502757|81.9226772233|1.44731818072 1.04425404989783e-08 IN ENSMUST00000078497 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_142504047_142504065 ENSMUST00000074187.12 0 chr7:142502757+142510663,chr7:142501842+142504249,chr7:142502757+142505515,chr7:142502757+142508334,chr7:142502757+142504249,chr7:142501842+142505515,chr7:142501842+142508334 0 18 AGGAGGCCCAAGAGGAAG 1 86.6464837324 1.44636366652 2.13913151637e-08 chr7_+_142504047_142504065|86.6464837324|1.44636366652 3.74488995369404e-09 IN ENSMUST00000074187 Annotated Alt5 Included I1 1 -1.14996056887692e-05 -4.88470111563756e-06 -4.03115430510739e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_142504249_142504264 ENSMUST00000074187.12 0 chr7:142504065+142507749,chr7:142502757+142510663,chr7:142504065+142505287,chr7:142502757+142505515,chr7:142502757+142508334,chr7:142504065+142504690,chr7:142501842+142505515,chr7:142504065+142508334,chr7:142501842+142508334,chr7:142504065+142505515,chr7:142504065+142510663 0 15 AAGTCCAGGAGGAAG 1 79.9189540699 1.65910526169 5.64381321233e-07 chr7_+_142504249_142504264|79.9189540699|1.65910526169 2.62932459693666e-07 IN ENSMUST00000074187 Annotated NA Included I1 1 1.34741961708172e-05 9.68264452809459e-06 4.80559779576754e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_142505287_142505299 ENSMUST00000074187.12 0 chr7:142504065+142507749,chr7:142502757+142510663,chr7:142504065+142508334,chr7:142502757+142505515,chr7:142502757+142508334,chr7:142504264+142507769,chr7:142504264+142508334,chr7:142504698+142507769,chr7:142504264+142507749,chr7:142504264+142505515,chr7:142501842+142505515,chr7:142501842+142508334,chr7:142504065+142505515,chr7:142504065+142510663 0 12 CCCCCGAACCAG 1 77.4458748055 1.35156250489 4.77421708114e-05 chr7_+_142505287_142505299|77.4458748055|1.35156250489 3.25144744043326e-05 IN ENSMUST00000074187 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_142505515_142505530 ENSMUST00000078497.14 0 chr7:142504065+142507749,chr7:142502757+142510663,chr7:142504065+142508334,chr7:142502757+142508334,chr7:142504264+142507769,chr7:142505299+142507749,chr7:142504264+142508334,chr7:142505299+142508334,chr7:142504264+142507749,chr7:142504698+142507769,chr7:142505299+142510663,chr7:142501842+142508334,chr7:142504065+142510663 0 15 AGGAAGTCCAAGAAG 1 81.1108161379 1.54615789024 2.26404261705e-06 chr7_+_142505515_142505530|81.1108161379|1.54615789024 8.56873525911794e-07 IN ENSMUST00000078497 Annotated NA Included I1 1 3.68618751064958e-06 7.70374973913583e-07 1.48537245011499e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_142508334_142508353 ENSMUST00000074187.12 0 chr7:142507863+142510663,chr7:142505530+142510663,chr7:142507807+142510663,chr7:142502757+142510663,chr7:142507788+142510663,chr7:142505299+142510663,chr7:142504065+142510663 0 19 AGGAGAAACCAAGACCCAA 1 78.0188801033 3.15513047058 1.01026671473e-08 chr7_+_142508334_142508353|78.0188801033|3.15513047058 6.36690389299588e-09 IN ENSMUST00000074187 Annotated NA Included I1 1 -2.24075939539823e-07 6.5297158417578e-08 -9.07825223321622e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_144396637_144396646 ENSMUST00000105902.7 152 chr7:144396431+144405329 152 9 TGGACAAAG 1 77.2894342774 4.18384619172 0.000132388054122 chr7_+_144396637_144396646|77.2894342774|4.18384619172 9.19646128234586e-05 IN ENSMUST00000105902 Annotated NA Other O1 4 0.0164069966930964 -0.0233703593672311 -0.00966768083272941 TRUE TRUE TRUE 12.5 1 FALSE FALSE FALSE chr7_+_144398240_144398261 ENSMUST00000105902.7 5 chr7:144396431+144405329 5 21 CCTCAGTCCGGAAGAAGAAGG 1 80.4207307627 2.98424001802 7.880807118e-12 chr7_+_144398240_144398261|80.4207307627|2.98424001802 3.36586314375609e-12 IN ENSMUST00000105902 Annotated NA Other O1 4 0.0145360751683097 0.00497757932347685 -0.0192976571014262 TRUE TRUE TRUE 14.5 1 FALSE FALSE TRUE chr7_+_144408055_144408076 ENSMUST00000105902.7 0 chr7:144407232+144409461 0 21 ACAGCAGAATCTTTCTATCAG 1 85.4130860309 2.82511996686 5.01131580677e-10 chr7_+_144408055_144408076|85.4130860309|2.82511996686 9.89021087249853e-11 IN ENSMUST00000105902 Annotated NA Included I1 1 2.99794003834049e-05 -0.00013951383280251 -6.28549672235261e-05 TRUE TRUE TRUE 14.5 1 14.5 1 FALSE FALSE FALSE chr7_+_16113002_16113015 ENSMUST00000006181.6 32 chr7:16112630+16113111 32 13 ACCCTTTACCGAG 1 77.4049261261 0.124176471987 2.70083543308e-08 chr7_+_16113002_16113015|77.4049261261|0.124176471987 1.84905016853421e-08 IN ENSMUST00000006181 Novel NA Excluded E1 6 -7.24376071131651e-05 7.23528924368905e-05 -0.000329216733949228 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_16150573_16150591 ENSMUST00000168693.2 1294 chr7:16150444+16152818 1294 18 CTCTGCTACTCAACCAAG 1 86.7545178115 2.52772724493 1.33695721161e-10 chr7_+_16150573_16150591|86.7545178115|2.52772724493 2.32034391700608e-11 IN ENSMUST00000168693 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_16893841_16893866 ENSMUST00000205459.1 11 chr7:16892511+16894941,chr7:16893219+16894941 3,8 25 CCATCCCAGCCCTGAGCTGCAACAG 1 79.8128189599 0.685724133561 0 chr7_+_16893841_16893866|79.8128189599|0.685724133561 0 IN ENSMUST00000205459 Novel NA Neuro-Muscular NM4 16 0.0269240120794441 0.0122125936803011 0.0064647838475739 TRUE FALSE TRUE FALSE FALSE FALSE chr7_+_19181708_19181737 ENSMUST00000117338.7 0 chr7:19179855+19182269,chr7:19181548+19182269,chr7:19181223+19182269,chr7:19181355+19182269,chr7:19181285+19182269 0 29 GAAAACCAAAGAAGTTATCTTCAGCATGG 1 88.4212257376 2.92945452892 0 chr7_+_19181708_19181737|88.4212257376|2.92945452892 0 IN ENSMUST00000117338 Annotated Alt5 Included I2 10 0.00504822763282095 0.00280753307213412 -0.00237752284223454 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_19515069_19515090 ENSMUST00000135972.1 10 chr7:19514539+19515203 10 21 TATCTAGAGGAAGCCCCCAAG 1 70.0494936951 2.19187999651 5.67546010188e-13 chr7_+_19515069_19515090|70.0494936951|2.19187999651 5.62105917367717e-13 IN ENSMUST00000135972 Novel Alt5 Excluded E2 3 -0.000540346049048288 -0.000585522196916448 -0.000587469413823809 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_24912136_24912155 ENSMUST00000206011.1 2 chr7:24908424+24912309 2 19 TTTCCTGGAGAAGACTGCG 1 78.06804614 1.84234783313 5.48823209101e-11 chr7_+_24912136_24912155|78.06804614|1.84234783313 3.43464146013162e-11 IN ENSMUST00000206011 Novel Alt5 Excluded E2 3 -0.000776282639104613 0.000147358871273688 -0.00131125008033692 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_24913139_24913169 ENSMUST00000117796.7 0 chr7:24912763+24922872,chr7:24912801+24913398 0 30 GCATACCATCTCTACAGATGAAGAGAAAAG 1 87.7487835118 1.49891174957 0 chr7_+_24913139_24913169|87.7487835118|1.49891174957 0 IN ENSMUST00000117796 Annotated NA Included I1 1 4.41010002470506e-118 8.24324002159894e-119 8.65270783300124e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_24918519_24918531 ENSMUST00000047873.15 112 chr7:24918000+24919183,chr7:24918000+24919630 105,7 12 AAGGTGGAAGAG 1 82.5483357556 1.61912499741 2.71713324285e-07 chr7_+_24918519_24918531|82.5483357556|1.61912499741 8.03917574732083e-08 IN ENSMUST00000047873 Annotated Alt3 Excluded E2 3 -0.00337324544339708 0.00100694326823117 0.0116175601299536 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_27616240_27616268 ENSMUST00000143499.7 3 chr7:27608753+27618207 3 28 GTGAATACATCAAGACCTGGAGGCCACG 1 79.5976139695 4.5944062511 0 chr7_+_27616240_27616268|79.5976139695|4.5944062511 0 IN ENSMUST00000143499 Novel Alt3 Excluded E1 6 0.000150752887525418 7.28437905598097e-05 0.000493282145679287 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_27731637_27731664 ENSMUST00000108336.7 4 chr7:27731470+27736935 4 27 CAGAGGACCAAGCTTCACTGAGGAGAG 1 76.4818545042 0.121741935971 0 chr7_+_27731637_27731664|76.4818545042|0.121741935971 0 IN ENSMUST00000108336 Novel Alt5 Excluded E2 3 -0.000121835863919603 0.00356816955147775 -0.003372210546997 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_27731640_27731664 ENSMUST00000108336.7 8 chr7:27731470+27736935 8 24 AGGACCAAGCTTCACTGAGGAGAG 1 74.2942766141 0.024642857989 0 chr7_+_27731640_27731664|74.2942766141|0.024642857989 0 IN ENSMUST00000108336 Novel Alt5 Excluded E2 3 0.0015185533670125 0.000616427325284622 -0.00362814325468312 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_28174876_28174892 ENSMUST00000208967.1 3 chr7:28174626+28174983 3 16 CCGCATCGTCATGAAG 1 75.4832729651 3.06825002804 3.06499714497e-10 chr7_+_28174876_28174892|75.4832729651|3.06825002804 2.55558574302484e-10 IN ENSMUST00000208967 Novel Alt5 Excluded E3 2 0.000684273551099407 0.0017946115610906 -5.18161526767712e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_28177960_28177978 ENSMUST00000042405.7 2 chr7:28177275+28178204 2 18 CCCAGGGCTGGCCACAGA 1 70.779664582 1.58381817426 5.15569809068e-11 chr7_+_28177960_28177978|70.779664582|1.58381817426 5.07783814995832e-11 IN ENSMUST00000042405 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_28393668_28393698 ENSMUST00000003529.8 0 chr7:28393254+28395042 0 30 GCCCAATTCCCACCGGACCTTGCCTGAGAG 1 78.2934365102 2.68279415829 0 chr7_+_28393668_28393698|78.2934365102|2.68279415829 0 IN ENSMUST00000003529 Annotated Alt5 Included I2 10 -0.000841268753048306 0.000352038627242636 -0.00360285797829277 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_28746451_28746481 ENSMUST00000207877.1 0 chr7:28744337+28746740,chr7:28744719+28746740 0 30 GCAAACCAAGACAGTGACCAAGTGCAGAAG 1 80.9382861624 0.835205869174 0 chr7_+_28746451_28746481|80.9382861624|0.835205869174 0 IN ENSMUST00000207877 Annotated NA Included I1 1 8.33064238389987e-107 -1.58893636346813e-107 2.1471382405779e-107 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_28840580_28840610 ENSMUST00000208971.1 0 chr7:28840452+28840863,chr7:28837756+28840863 0 30 GTCATGACAGGACCCCCAGTCTTCAATCCG 1 86.1021010781 1.558588222 0 chr7_+_28840580_28840610|86.1021010781|1.558588222 0 IN ENSMUST00000208971 Annotated Alt3 Excluded E4 11 -0.00607437926662489 -0.00278664162695651 0.00050791891563504 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_28995464_28995488 ENSMUST00000208227.1 0 chr7:28994287+28996088 0 24 ATGGAGAACGAGAAGCGCAGAGAG 1 88.3737169831 0.204178571701 6.29896135251e-12 chr7_+_28995464_28995488|88.3737169831|0.204178571701 9.96314142298615e-13 IN ENSMUST00000208227 Annotated NA Included I1 1 -1.40036168115706e-16 -9.35647096654635e-16 2.6479573689781e-16 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_29872891_29872912 ENSMUST00000145952.1 1 chr7:29860093+29874393 1 21 AAATCAGGGATGTTTAATGAT 1 75.6376418905 0.770600018799 1.26787469412e-11 chr7_+_29872891_29872912|75.6376418905|0.770600018799 1.04423136804144e-11 IN ENSMUST00000145952 Novel Alt3 Excluded E2 3 0.0012839550853568 -0.00526804377890219 -0.0053691313230353 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_30310027_30310054 ENSMUST00000136887.7 0 chr7:30309559+30311839 0 27 GAAGAAGAGGAATATTTGCTTCGACAG 1 77.1183889505 2.30587097041 0 chr7_+_30310027_30310054|77.1183889505|2.30587097041 0 IN ENSMUST00000136887 Annotated Alt5 Excluded E2 3 -2.76846513480427e-05 0.00010058307237001 -0.000337797283126362 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_30414341_30414368 ENSMUST00000207982.1 0 chr7:30413899+30414503 0 27 GATTAAGTCCCGTACAGGCCCAGAGTG 1 85.3477614935 0.940193548618 0 chr7_+_30414341_30414368|85.3477614935|0.940193548618 0 IN ENSMUST00000207982 Annotated NA Included I1 1 -4.00335480791815e-61 -3.79975092305142e-60 -1.26508053208035e-60 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_30481641_30481666 ENSMUST00000126297.8 0 chr7:30481500+30481740 0 25 AGATCTCAGAGAAGACAGAGGCAGG 1 83.9187699735 1.44320692199 1.87405646557e-13 chr7_+_30481641_30481666|83.9187699735|1.44320692199 4.48530101948563e-14 IN ENSMUST00000126297 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_30564081_30564101 ENSMUST00000168229.7 11 chr7:30563996+30564202 11 20 GTCACGTGAGCGACGTGGAG 1 76.6014205049 3.37416664961 6.46593889542e-13 chr7_+_30564081_30564101|76.6014205049|3.37416664961 4.86388707088281e-13 IN ENSMUST00000168229 Annotated Alt3 Excluded E1 6 -9.82097791070948e-05 9.78248361993521e-05 0.000145296409551578 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_30564202_30564228 ENSMUST00000168333.7 0 chr7:30563619+30565136,chr7:30563619+30567278,chr7:30564131+30564473 0 26 GAGGTATTCACAGAACTGCAGGAGAA 1 78.4122429232 4.24963342349 6.92779167366e-14 chr7_+_30564202_30564228|78.4122429232|4.24963342349 4.11892742135933e-14 IN ENSMUST00000168333 Annotated Alt3 Excluded E3 2 -0.000128827878956021 -5.49204665773806e-05 9.83748157703965e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_30564382_30564394 ENSMUST00000171850.7 1 chr7:30564131+30564473 1 12 GACTATCGATAA 1 61.8516440394 0.0744999990857 7.59027869446e-08 chr7_+_30564382_30564394|61.8516440394|0.0744999990857 7.5901587903715e-08 IN ENSMUST00000171850 Novel Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_30779677_30779704 ENSMUST00000165887.7 0 chr7:30778269+30779832 0 27 GCGGGAGTCACACCTTCATCTTCCTCG 1 85.5965609738 0.809290320162 0 chr7_+_30779677_30779704|85.5965609738|0.809290320162 0 IN ENSMUST00000165887 Annotated NA Included I1 1 2.41247535759223e-14 8.79240434610246e-14 -4.92906482604362e-14 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_30789742_30789754 ENSMUST00000189673.6 1 chr7:30789543+30789911 1 12 AGGCTACAGTCT 1 72.4348060598 0.586125007598 8.19563832355e-08 chr7_+_30789742_30789754|72.4348060598|0.586125007598 7.87212028896533e-08 IN ENSMUST00000189673 Novel Alt5 Excluded E1 6 -7.86915203127159e-05 -0.00228940639348345 0.00173391558038408 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_3314511_3314541 ENSMUST00000100301.10 0 chr7:3314220+3319530,chr7:3314220+3318859 0 30 GCCTGCAATTACCCCTTGGAATTGTATGAG 1 86.84135249 2.28852938028 0 chr7_+_3314511_3314541|86.84135249|2.28852938028 0 IN ENSMUST00000100301 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_+_35414143_35414172 ENSMUST00000141704.7 0 chr7:35409692+35416416 0 29 ATGTTAAACACTCTGTTCTGAATCTAGAG 1 84.6031239147 1.11021214094 0 chr7_+_35414143_35414172|84.6031239147|1.11021214094 0 IN ENSMUST00000141704 Annotated NA Included I1 1 -4.73082447887626e-101 -6.52921409960738e-102 -7.37540234526034e-101 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_40901249_40901279 ENSMUST00000206223.1 139 chr7:40900188+40902492,chr7:40900895+40902429 81,58 30 GTAACAAATAAGGATGCAACTAAAATCAGC 1 83.7036340365 3.40538231503 0 chr7_+_40901249_40901279|83.7036340365|3.40538231503 0 IN ENSMUST00000206223 Annotated NA Included I2 10 0.0120304531698752 -0.0333216592369479 -0.00805477928340209 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_41396427_41396436 ENSMUST00000170929.1 70 chr7:41394020+41396864 70 9 GAGAAGCAG 1 87.7537208314 0.0475384627397 4.21842978716e-05 chr7_+_41396427_41396436|87.7537208314|0.0475384627397 6.85612499595756e-06 IN ENSMUST00000170929 Novel NA Excluded E1 6 0.000513715084843424 -0.00121967094812851 -0.00101244949272516 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_4143293_4143309 ENSMUST00000037472.12 158 chr7:4143037+4143418 158 16 TGGCTGAGTTGCCGGG 1 81.1618811437 -0.247400003113 3.2832758734e-10 chr7_+_4143293_4143309|81.1618811437|-0.247400003113 1.23156151943249e-10 IN ENSMUST00000037472 Novel NA Excluded E2 3 0.00212496555101917 0.000947733228990824 0.00745581244641891 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_44334032_44334059 ENSMUST00000107938.7 0 chr7:44333618+44342097 0 27 TCTGATCGATGGGATTGACTCAGGGAG 1 79.5213099379 1.51054840222 0 chr7_+_44334032_44334059|79.5213099379|1.51054840222 0 IN ENSMUST00000107938 Annotated NA Excluded E4 11 -0.01007081990372 -0.0239048454056074 0.0467651694303968 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_44344297_44344321 ENSMUST00000107938.7 0 chr7:44343738+44344505 0 24 TCTCCCCCTGGAAGAAGAAAATTG 1 72.0129241766 1.78935714252 2.62545540863e-12 chr7_+_44344297_44344321|72.0129241766|1.78935714252 2.54340992711377e-12 IN ENSMUST00000107938 Annotated NA Neuronal N5 14 0.00718713569645271 0.0395899154038196 -0.0929102936773941 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_44356117_44356133 ENSMUST00000107938.7 2 chr7:44354644+44356619 2 16 GCAGTATAGAATAGTG 1 59.40055829 1.76144999489 1.77806214197e-09 chr7_+_44356117_44356133|59.40055829|1.76144999489 1.77805947743082e-09 IN ENSMUST00000107938 Novel NA Excluded E2 3 -0.0014094315197058 0.00878169960687665 0.0014621431731429 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_44468181_44468190 MmuEX0024918 0 chr7:44468159+44468806,chr7:44468159+44468809,chr7:44468159+44468305,chr7:44468159+44468359 0 9 GCCGGCGGG 1 65.1993194233 1.38492306494 0.000507219283288 chr7_+_44468181_44468190|65.1993194233|1.38492306494 0.000507075517942046 IN MmuEX0024918 Missing in GENCODE Alt5_3 Excluded E1 6 0.000570009019665605 8.91775708133645e-05 0.0010252318301312 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_44597589_44597619 ENSMUST00000208651.1 29 chr7:44596268+44598380,chr7:44596268+44598383 24,5 30 GCAGTGACTTGGGTGTCCTGGAGGAAGGAG 1 91.343946361 0.392852947445 0 chr7_+_44597589_44597619|91.343946361|0.392852947445 0 IN ENSMUST00000208651 Annotated NA Excluded E3 2 0.000197620264394919 0.00751958411652942 -0.00287569573958366 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_4474184_4474213 ENSMUST00000171445.7 0 chr7:4474072+4474343,chr7:4474072+4477329 0 29 CAAAGCGCCCCCCAGGTCGCGGTCAATGG 1 81.6005084818 1.31433333338 0 chr7_+_4474184_4474213|81.6005084818|1.31433333338 0 IN ENSMUST00000171445 Annotated NA Included I1 1 5.72981482489215e-09 5.44780843138816e-08 -9.47797230804576e-09 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_45020489_45020499 ENSMUST00000210397.1 2 chr7:45020405+45021086 2 10 TTTCAATGAG 1 80.5862518158 3.0475714228 2.48476554665e-06 chr7_+_45020489_45020499|80.5862518158|3.0475714228 1.03097443926448e-06 IN ENSMUST00000210397 Novel Alt3 Excluded E1 6 -0.000245323781479539 -0.000380907877107418 0.000737928225900985 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_45220642_45220665 ENSMUST00000209343.1 0 chr7:45220545+45232203 0 23 GCCACTGAGCTTTTCCAGTTCTG 1 80.7755962996 1.92592593255 1.65286451193e-10 chr7_+_45220642_45220665|80.7755962996|1.92592593255 6.63427091041058e-11 IN ENSMUST00000209343 Annotated Alt3 Excluded E2 3 0.000546026822253374 -0.00162835857208888 0.00152190783941031 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_45720293_45720308 ENSMUST00000209867.1 2 chr7:45720018+45720713 2 15 GTGTGTGCACTGCGG 1 82.1148528974 3.07089470954 2.45927367359e-09 chr7_+_45720293_45720308|82.1148528974|3.07089470954 7.82381159858403e-10 IN ENSMUST00000209867 Novel Alt3 Excluded E4 11 -0.00457145499092536 -0.0030350490525959 -0.0117487189089691 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_4743246_4743266 ENSMUST00000098853.8 0 chr7:4743110+4745801 0 20 ACTGCAAACCCAACTGCAAG 1 78.0494707694 3.97016665836 2.42562236963e-09 chr7_+_4743246_4743266|78.0494707694|3.97016665836 1.52203594172562e-09 IN ENSMUST00000098853 Annotated NA Included I1 1 -1.41537571508305e-119 -2.64558211260801e-120 -2.77699654609487e-119 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_48796497_48796502 ENSMUST00000118927.7 48 chr7:48796046+48799828 48 5 AACAG 1 77.6667421766 0.00688888298141 0.014289797878 chr7_+_48796497_48796502|77.6667421766|0.00688888298141 0.00945402853391974 IN ENSMUST00000118927 Novel NA Excluded E1 6 0.000564613281451176 0.000302008882863905 0.0002602837853678 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_4926489_4926516 ENSMUST00000057612.8 0 chr7:4925979+4926973 0 27 CAATGCTGGTGGGGATCCAGGCTATAG 1 85.3321208933 0.728000009733 0 chr7_+_4926489_4926516|85.3321208933|0.728000009733 0 IN ENSMUST00000057612 Annotated NA Included I1 1 7.10391753623825e-07 1.38160985507595e-07 5.12418555885164e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_49565084_49565108 ENSMUST00000183659.7 0 chr7:49564123+49565205 0 24 CCAGAAGAAAAATGCCAGTCAGAG 1 88.7296183214 3.97675001754 3.74456021746e-12 chr7_+_49565084_49565108|88.7296183214|3.97675001754 5.85864690094695e-13 IN ENSMUST00000183659 Annotated NA Included I1 1 -5.17718477245419e-28 2.54418944315864e-28 1.07176275102671e-27 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_49575246_49575255 ENSMUST00000183659.7 0 chr7:49572458+49575643,chr7:49572453+49575647 0 9 GTCAATGAG 1 87.0454398794 4.16607693525 0.0120271468429 chr7_+_49575246_49575255|87.0454398794|4.16607693525 0.00204225614254927 IN ENSMUST00000183659 Annotated NA Included I1 1 -1.40733261123183e-08 8.99961700362746e-10 3.15736833569211e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_64734681_64734690 ENSMUST00000206246.1 2 chr7:64733658+64736880 2 9 AAAAAAGCG 1 69.726323679 5.45500002228 4.78166833733e-05 chr7_+_64734681_64734690|69.726323679|5.45500002228 4.74460799813059e-05 IN ENSMUST00000206246 Novel Alt5 Excluded E1 6 0.00058964089089565 -0.00107411329954655 0.0030783290211337 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_65693928_65693943 ENSMUST00000032726.13 6 chr7:65693569+65695142 6 15 TTCCCAGGGCAGCAG 1 76.107308742 1.09963157078 5.65341906622e-09 chr7_+_65693928_65693943|76.107308742|1.09963157078 4.46850212387773e-09 IN ENSMUST00000032726 Novel Alt5 Excluded E1 6 -5.95553445916158e-05 -0.000426404172432111 -0.000364134263601569 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_67224375_67224401 ENSMUST00000208213.1 180 chr7:67223891+67225025,chr7:67223891+67225863 25,155 26 CACTCAGAGTGATTAACAGTGGCAAA 1 79.8251795225 1.97900000066 0 chr7_+_67224375_67224401|79.8251795225|1.97900000066 0 IN ENSMUST00000208213 Annotated NA Neuronal N3 17 0.0578016672958914 0.0223566873333787 0.0255403996496157 TRUE TRUE TRUE 13.5 1 12.5 1 FALSE FALSE FALSE chr7_+_75696321_75696338 ENSMUST00000166315.6 55 chr7:75695666+75697301 55 17 GGATTTGTGCATGCTAG 1 75.9943028165 -0.0213809520716 3.66981112165e-10 chr7_+_75696321_75696338|75.9943028165|-0.0213809520716 2.93103097348535e-10 IN ENSMUST00000166315 Novel NA Excluded E2 3 0.00856632222909879 0.000987694196850445 0.0218077114369283 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_79531002_79531028 ENSMUST00000181511.8 37 chr7:79500250+79531185,chr7:79515672+79531185,chr7:79523976+79531185,chr7:79527869+79531185 7,1,2,27 26 GAGTTCCCTGCTGGGGATGTCTGGAG 1 86.0396767844 0.152633331344 0 chr7_+_79531002_79531028|86.0396767844|0.152633331344 0 IN ENSMUST00000181511 Novel NA Excluded E2 3 -0.00147804881086037 0.00318159152855839 -0.00392006980046217 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_81873829_81873836 ENSMUST00000126334.7 115 chr7:81871490+81875723 115 7 AGGCTTG 1 83.6773246826 4.23672730814 0.00100609690575 chr7_+_81873829_81873836|83.6773246826|4.23672730814 0.000249274214306427 IN ENSMUST00000126334 Novel Alt5 Excluded E1 6 0.000661903134285152 6.94930697966004e-05 0.00158325638406193 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_87306728_87306756 ENSMUST00000032781.13 0 chr7:87304935+87314063 0 28 GATCCCAGAAAGCTTCTCTTCACAACCA 1 86.1838603301 2.50868748029 0 chr7_+_87306728_87306756|86.1838603301|2.50868748029 0 IN ENSMUST00000032781 Annotated NA Included I1 1 1.19008933137748e-10 -8.12670963345883e-12 6.53642977764906e-10 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_90194272_90194296 ENSMUST00000207225.1 1019 chr7:90191753+90195654 1019 24 AATGGCATGCATTTTCCACAATAC 1 71.6994561663 4.82703575066 0 chr7_+_90194272_90194296|71.6994561663|4.82703575066 0 IN ENSMUST00000207225 Annotated NA Excluded E4 11 -0.00465236921713266 0.00257244005344195 0.0899750572432787 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_92572632_92572640 ENSMUST00000085017.4 1 chr7:92568575+92574621 1 8 AGAATGAG 1 66.8417895982 3.75108328726 0.000359589769389 chr7_+_92572632_92572640|66.8417895982|3.75108328726 0.000359222977630025 IN ENSMUST00000085017 Novel Alt5 Excluded E1 6 0.000228701006551101 -0.000301189982214039 0.000221852554201659 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_96805104_96805131 ENSMUST00000107162.7 295 chr7:96797505+96811832 295 27 CTCACTATCTGGATAGGGTAGTTAAAG 1 82.0526702907 6.03845161392 0 chr7_+_96805104_96805131|82.0526702907|6.03845161392 0 IN ENSMUST00000107162 Annotated NA Neuro-Muscular NM2 9 0.0521291728284215 -0.0334372397454308 0.0276285712480969 TRUE TRUE TRUE 14.5 1 14.5 1 FALSE FALSE FALSE chr7_+_96854716_96854737 ENSMUST00000107162.7 442 chr7:96852582+96863449 442 21 AAATAAAGATTTCAGACATAG 1 84.1427792753 6.27692006111 9.62963042639e-12 chr7_+_96854716_96854737|84.1427792753|6.27692006111 2.23121521258918e-12 IN ENSMUST00000107162 Annotated NA Neuronal N1 18 0.0673326680840368 0.00296176801877299 0.0411646616229135 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE TRUE chr7_+_97059785_97059812 ENSMUST00000044466.11 0 chr7:97057545+97062568 0 27 ATCAGGACTTACGAAAGCCTACCAGTG 1 86.3169953282 2.32799999031 0 chr7_+_97059785_97059812|86.3169953282|2.32799999031 0 IN ENSMUST00000044466 Annotated Alt3 Included I2 10 -0.00960528202465076 -0.00176508707203798 -0.0178920918388897 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_97884752_97884776 ENSMUST00000206984.1 1565 chr7:97883588+97886297 1565 24 TTTGGGCAGAAGGATCAGAGAGAG 1 80.8909155148 0.0105714264667 0 chr7_+_97884752_97884776|80.8909155148|0.0105714264667 0 IN ENSMUST00000206984 Novel NA Excluded E1 6 0.0023284210198768 -0.00064393008547757 0.00295871379084351 TRUE FALSE FALSE FALSE FALSE FALSE chr7_+_99456996_99457011 ENSMUST00000037528.9 746 chr7:99456534+99458773 746 15 CTATCACTTGATCAG 1 80.1451040278 5.40005262274 8.07631295174e-09 chr7_+_99456996_99457011|80.1451040278|5.40005262274 3.61871232978928e-09 IN ENSMUST00000037528 Annotated NA Neuro-Muscular NM4 16 0.0240802258908467 -0.0406640572185267 0.0524737677910933 TRUE FALSE TRUE FALSE FALSE FALSE chr7_+_99597035_99597059 ENSMUST00000098266.8 0 chr7:99596106+99598296,chr7:99596106+99598464,chr7:99596106+99598490 0 24 CCTCTTGGGAGACCTTGCATCCAG 1 77.9264520977 3.41835710752 7.68096697357e-12 chr7_+_99597035_99597059|77.9264520977|3.41835710752 4.9041881666767e-12 IN ENSMUST00000098266 Annotated NA Neuronal N2 8 0.0585992432797972 0.0236091083926778 -0.0371841862810969 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE FALSE chr7_-_100095856_100095859 ENSMUST00000032969.13 1 chr7:100093481-100096372 1 3 CTG 2 73.4974001214 2.61285717572 0.16140781443 chr7_-_100095856_100095859|73.4974001214|2.61285717572,chr7_-_100096174_100096177|66.0942863023|-0.00871428474784 0.575158265008707 RESCUED ENSMUST00000032969 Novel NA Excluded E3 2 -0.00106700641939341 -6.20737486521051e-05 0.00312534696082873 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_102560592_102560615 ENSMUST00000033264.11 0 chr7:102560068-102561787 0 23 GAGGTGAGGATCATCCTGGAAAG 1 90.3374927317 1.07318520077 2.40447661781e-11 chr7_-_102560592_102560615|90.3374927317|1.07318520077 3.7434499944311e-12 IN ENSMUST00000033264 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_102679673_102679696 ENSMUST00000210855.1 233 chr7:102679136-102680136 233 23 GGTATTCAGGAAGCCTTGAACAG 1 89.8009821675 1.43848147298 0 chr7_-_102679673_102679696|89.8009821675|1.43848147298 0 IN ENSMUST00000210855 Annotated NA Included I3 5 0.00492353136580863 -0.00646491110893396 0.00819280906847791 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_104274772_104274795 ENSMUST00000098179.8 0 chr7:104273376-104276605,chr7:104266566-104276605 0 23 GGTGTGGAGAACATCATAAAACG 1 82.8198538118 0.3110740776 4.55031567981e-11 chr7_-_104274772_104274795|82.8198538118|0.3110740776 1.28790311748617e-11 IN ENSMUST00000098179 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_104300835_104300862 ENSMUST00000142641.1 0 chr7:104300385-104301093,chr7:104300385-104300991 0 27 AGGTCACAGAGGCTCATCGCTACTAGG 1 83.1917755441 0.279709681869 0 chr7_-_104300835_104300862|83.1917755441|0.279709681869 0 IN ENSMUST00000142641 Annotated NA Included I1 1 -3.18784289715168e-17 -6.28571761179148e-18 -4.08546836493801e-17 TRUE TRUE FALSE FALSE FALSE FALSE chr7_-_104302240_104302263 ENSMUST00000106837.7 0 chr7:104301191-104304155 0 23 GGTGTGGAGAACATCATAGAACG 1 81.3134879322 -0.0989259153053 4.17372802985e-11 chr7_-_104302240_104302263|81.3134879322|-0.0989259153053 1.5246137685665e-11 IN ENSMUST00000106837 Annotated NA Included I1 1 -3.92665264820106e-22 -4.85500892392895e-23 -5.35510183322929e-22 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_104341618_104341645 ENSMUST00000059037.14 0 chr7:104341373-104341877 0 27 AGGTCACAGAGGCTCAACGCTACTGGG 1 82.61652601 0.230548384329 0 chr7_-_104341618_104341645|82.61652601|0.230548384329 0 IN ENSMUST00000059037 Annotated NA Included I1 1 -4.05592356903222e-07 -1.85651125364098e-06 7.96562910972362e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_104343055_104343078 ENSMUST00000059037.14 0 chr7:104341975-104344898 0 23 GGTGTGGAGAACATCATAAAACG 1 82.8198538118 0.620296291317 4.11546352552e-11 chr7_-_104343055_104343078|82.8198538118|0.620296291317 1.16482379297622e-11 IN ENSMUST00000059037 Annotated NA Included I1 1 -1.70274239205269e-08 -1.37503620717313e-07 3.9175025731479e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_104357955_104357981 ENSMUST00000145982.1 0 chr7:104356906-104358459 0 26 GGCTCATGATGTCCAGTGATACTGGG 1 83.6516022828 0.251733323062 3.38173933301e-13 chr7_-_104357955_104357981|83.6516022828|0.251733323062 8.41549052665869e-14 IN ENSMUST00000145982 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_104411918_104411945 ENSMUST00000076922.5 0 chr7:104411669-104412214 0 27 GACTCATGGATATCCAGCAATACTGGG 1 84.8714309868 0.148612898684 0 chr7_-_104411918_104411945|84.8714309868|0.148612898684 0 IN ENSMUST00000076922 Annotated Alt3 Included I1 1 0.000419539048655584 -7.76153571700582e-05 -6.72347455647342e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_104421434_104421457 ENSMUST00000076922.5 0 chr7:104412315-104429120 0 23 GGTGCAAATTGTGTCCTGAGAAG 1 84.2491215455 -0.0544814914982 2.38429720412e-10 chr7_-_104421434_104421457|84.2491215455|-0.0544814914982 5.44366773880256e-11 IN ENSMUST00000076922 Annotated NA Included I1 1 5.28403218125505e-08 2.62111428415391e-07 -4.88038128990404e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_104472883_104472910 ENSMUST00000141063.1 158 chr7:104472635-104473178 158 27 GGCTCATGGATGTTCAGCAATACTGGG 1 84.5687698371 0.0397096730528 0 chr7_-_104472883_104472910|84.5687698371|0.0397096730528 0 IN ENSMUST00000141063 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_104479707_104479730 ENSMUST00000071069.12 0 chr7:104473282-104483331 0 23 GGTGTAAATTATGTCCTGACAAG 1 87.4153245357 -0.0344074013884 1.42421185956e-10 chr7_-_104479707_104479730|87.4153245357|-0.0344074013884 2.35972352768954e-11 IN ENSMUST00000071069 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_105565945_105565951 ENSMUST00000191011.6 10259 chr7:105565647-105566050 10259 6 AGAGAG 1 69.0943122319 1.89239998758 0.000374723958497 chr7_-_105565945_105565951|69.0943122319|1.89239998758 0.000372814988958137 IN ENSMUST00000191011 Annotated Alt3 Neuro-Muscular NM4 16 0.0349957210387082 0.0248799186387358 -0.00220314090498379 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE TRUE chr7_-_105568618_105568631 ENSMUST00000188001.6 35 chr7:105567753-105568792,chr7:105567753-105569239 20,15 13 GACAACAGTCCAG 1 85.2760840412 1.37294118276 5.94882276772e-08 chr7_-_105568618_105568631|85.2760840412|1.37294118276 1.19248745322764e-08 IN ENSMUST00000188001 Annotated Alt5 Excluded E2 3 0.00228344555750769 -0.0102626621570133 -0.00210246803969864 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_105599368_105599378 ENSMUST00000210531.1 2 chr7:105596350-105599661 2 10 GGGAGTTTGT 1 70.893809889 1.49742858019 1.228220671e-05 chr7_-_105599368_105599378|70.893809889|1.49742858019 1.20833119481301e-05 IN ENSMUST00000210531 Novel Alt3 Excluded E1 6 -1.96900444203017e-05 0.000672846799971121 -0.000736925317604116 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_109536030_109536041 ENSMUST00000079282.7 86 chr7:109535371-109538275 86 11 GGAGAAAAGAG 1 69.8691606829 0.0574666678983 2.69058729963e-06 chr7_-_109536030_109536041|69.8691606829|0.0574666678983 2.66770482004741e-06 IN ENSMUST00000079282 Missing in GENCODE NA Excluded E1 6 0.00512382510445526 0.00106121273808719 0.00950005171018701 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_110421752_110421774 ENSMUST00000164759.7 7 chr7:110420941-110422444 7 22 TTGTCAACATCTGCTGCAAGGG 1 71.68419536 -0.0662307701289 3.27959881474e-13 chr7_-_110421752_110421774|71.68419536|-0.0662307701289 3.1952218648712e-13 IN ENSMUST00000164759 Novel NA Excluded E1 6 0.000238010032544754 5.31860883338918e-05 0.000193266787490061 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_113351133_113351156 ENSMUST00000047091.13 36 chr7:113335518-113351780 36 23 CTATTAAATTCCACATATCACAG 1 80.5877364644 0.761148156805 0 chr7_-_113351133_113351156|80.5877364644|0.761148156805 0 IN ENSMUST00000047091 Novel NA Excluded E1 6 0.000177535882607572 7.39726070337784e-05 0.000207889845437034 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_113351931_113351938 ENSMUST00000119278.7 6 chr7:113335518-113368871 6 7 GTTATGG 1 72.3404445583 3.01363636282 0.00791784066055 chr7_-_113351931_113351938|72.3404445583|3.01363636282 0.0076210384077734 IN ENSMUST00000119278 Novel Alt3 Excluded E1 6 -0.000136130737578918 0.000571039479113816 0.000198430295299066 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_118443118_118443136 ENSMUST00000081574.7 0 chr7:118442496-118447813,chr7:118442496-118443345 0 18 TTGGAACCACTGAACGAG 1 72.1028662591 3.5146363276 1.20344337828e-08 chr7_-_118443118_118443136|72.1028662591|3.5146363276 1.16390610482853e-08 IN ENSMUST00000081574 Annotated NA Included I1 1 3.40467945059135e-08 -2.83423879791979e-07 -5.44009016391981e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_118443118_118443141 ENSMUST00000203796.3 0 chr7:118442496-118447813,chr7:118442496-118443345 0 23 GGCAGTTGGAACCACTGAACGAG 1 76.4433226946 3.58322219992 1.16813225759e-11 chr7_-_118443118_118443141|76.4433226946|3.58322219992 8.93352058994878e-12 IN ENSMUST00000203796 Annotated NA Included I1 1 -9.8567498630307e-06 7.6632518102135e-05 1.78773706248509e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_119478198_119478215 ENSMUST00000207729.1 0 chr7:119477453-119478247 0 17 TAACTCAACAGAAGCGA 1 71.9920355164 0.140238110153 4.49945208869e-08 chr7_-_119478198_119478215|71.9920355164|0.140238110153 4.36056522001849e-08 IN ENSMUST00000207729 Annotated Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_121997760_121997789 ENSMUST00000124566.1 0 chr7:121997421-121998062 0 29 GAATCAACGATGTTCCCACTAGGAACCAG 1 84.1093919456 0.611090913641 0 chr7_-_121997760_121997789|84.1093919456|0.611090913641 0 IN ENSMUST00000124566 Annotated Alt3 Included I2 10 -4.62525942729612e-05 0.000566955453645025 0.00266847161219602 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_126173742_126173767 ENSMUST00000168189.7 37 chr7:126171142-126174157 37 25 GCTCTTCAACAGAGAACATGGAGGT 1 73.8200867636 0.366586208279 0 chr7_-_126173742_126173767|73.8200867636|0.366586208279 0 IN ENSMUST00000168189 Missing in GENCODE NA Excluded E1 6 0.000577242481055591 -0.00111812259420233 0.000962872767286905 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_126368185_126368215 ENSMUST00000206793.1 226 chr7:126368106-126368298 226 30 CCAACAGTGTGGCAAGCTACGAGAACCAGG 1 78.6634247466 1.60135294146 0 chr7_-_126368185_126368215|78.6634247466|1.60135294146 0 IN ENSMUST00000206793 Annotated NA Included I1 1 -0.00013602346392137 -0.00208637593348838 -0.0031901243331571 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_126368941_126368969 ENSMUST00000206793.1 0 chr7:126368836-126369147 0 28 TCTCCTATGACAGCACTTCCACAGAGAG 1 89.7646255407 0.141593745444 0 chr7_-_126368941_126368969|89.7646255407|0.141593745444 0 IN ENSMUST00000206793 Annotated NA Included I1 1 1.92950607605014e-05 -7.42997838947791e-06 7.57676296190586e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_126462499_126462517 ENSMUST00000032974.12 0 chr7:126462187-126462804 0 18 AGCTCCCTGCTGAGGAAG 1 84.5725332486 3.37781812792 8.65838956088e-09 chr7_-_126462499_126462517|84.5725332486|3.37781812792 1.89284787843746e-09 IN ENSMUST00000032974 Annotated NA Included I1 1 -2.52425599369537e-08 -1.37167201436007e-08 -1.1567943882785e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_126562960_126562963 ENSMUST00000032992.6 6 chr7:126562690-126563003 6 3 GAT 1 72.8163952712 -0.500000018094 0.0185039873744 chr7_-_126562960_126562963|72.8163952712|-0.500000018094 0.0176073068921325 IN ENSMUST00000032992 Novel NA Excluded E1 6 -0.000267855503522835 -0.000378395930802592 -0.000642666913958893 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_126787436_126787461 ENSMUST00000206353.1 1 chr7:126787346-126788116 1 25 CCTGTCTGCCATCATTGATGGCAAG 1 81.0564020412 3.4205517106 0 chr7_-_126787436_126787461|81.0564020412|3.4205517106 0 IN ENSMUST00000206353 Novel Alt5 Excluded E2 3 6.73096934835388e-05 -0.000152258921126118 0.000431147079765885 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_126789023_126789028 ENSMUST00000205935.1 1 chr7:126788434-126792060 1 5 TCACA 1 70.427319495 4.15677776602 0.0137030331684 chr7_-_126789023_126789028|70.427319495|4.15677776602 0.0135367133978317 IN ENSMUST00000205935 Novel Alt5 Excluded E1 6 4.33404598022187e-06 3.20220379224565e-05 0.000101455113517351 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_127026227_127026251 ENSMUST00000206291.1 0 chr7:127026154-127026950 0 24 GGCTGCGCCCAGAGTCCATTCCAG 1 89.9726489752 0.493142863669 2.72848410532e-12 chr7_-_127026227_127026251|89.9726489752|0.493142863669 4.22550883172335e-13 IN ENSMUST00000206291 Annotated Alt5 Included I2 10 -0.0156704414662614 0.00112121930918452 -0.034975445918173 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_127889736_127889757 ENSMUST00000121394.2 0 chr7:127889641-127893246,chr7:127889641-127890858 0 21 GTCTTCAAGCAGCTCAGCGTG 1 89.3119803579 1.8879599791 2.71029421128e-10 chr7_-_127889736_127889757|89.3119803579|1.8879599791 4.19789758510092e-11 IN ENSMUST00000121394 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_127929556_127929574 ENSMUST00000032988.9 0 chr7:127927971-127929797 0 18 GAGCTGACGGGACTGAAG 1 90.9493405795 0.697772726417 2.62516547389e-08 chr7_-_127929556_127929574|90.9493405795|0.697772726417 4.15707335221782e-09 IN ENSMUST00000032988 Annotated NA Included I1 1 -8.35127384815308e-10 -3.18306080549786e-09 3.66615277626877e-11 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_127933566_127933573 ENSMUST00000152697.2 1 chr7:127933492-127934138 1 7 GACAGAG 1 74.2630299406 0.941999989477 0.000151384356009 chr7_-_127933566_127933573|74.2630299406|0.941999989477 0.00013639222330486 IN ENSMUST00000152697 Novel Alt5 Excluded E3 2 0.00123070385391188 0.00638437740532932 -0.00742658259749848 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_12996230_12996239 ENSMUST00000133977.2 1 chr7:12995038-12997377 1 9 GGACCACTG 1 83.9881686628 3.27630769289 3.46595005407e-05 chr7_-_12996230_12996239|83.9881686628|3.27630769289 8.20778942955958e-06 IN ENSMUST00000133977 Novel Alt5 FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_13032791_13032821 ENSMUST00000211344.1 35 chr7:13032565-13033828 35 30 GATGCTGTTCGAATCATGGCAAAAGACCTG 1 76.0762347019 4.02741176854 0 chr7_-_13032791_13032821|76.0762347019|4.02741176854 0 IN ENSMUST00000211344 Annotated Alt3 Excluded E3 2 -0.000492880720997403 -0.00050190091758014 -0.000889808724876534 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_130481682_130481695 ENSMUST00000207041.1 1 chr7:130467437-130504693 1 13 CTCACCATTGGAG 1 84.9598884207 2.68258828626 2.16759273564e-06 chr7_-_130481682_130481695|84.9598884207|2.68258828626 4.51165245496377e-07 IN ENSMUST00000207041 Novel Alt5 Excluded E2 3 -8.18173755547902e-05 0.000566471484968304 0.00104314587326754 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_13266804_13266818 ENSMUST00000119139.7 1 chr7:13261640-13269334 1 14 GTTTCACAGTTTTT 1 70.3194925761 0.148388887238 1.11700495076e-07 chr7_-_13266804_13266818|70.3194925761|0.148388887238 1.10433628242035e-07 IN ENSMUST00000119139 Novel NA Excluded E1 6 0.000149401946262135 7.89811737456581e-05 -0.000495054671062418 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_133701838_133701851 ENSMUST00000209636.1 1 chr7:133700910-133702329 1 13 TTTGTCAGAAAAG 1 85.9801872611 2.03158823094 8.160713727e-08 chr7_-_133701838_133701851|85.9801872611|2.03158823094 1.51712650220404e-08 IN ENSMUST00000209636 Novel Alt5 Excluded E1 6 -0.000161434076397288 -0.000455700325855718 0.000424710479963231 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_140112253_140112278 ENSMUST00000026538.12 34 chr7:140111795-140112418 34 25 TGGCTAAGCTACTTGTGTGAAGGCT 1 76.6907065798 -0.742379311665 0 chr7_-_140112253_140112278|76.6907065798|-0.742379311665 0 IN ENSMUST00000026538 Novel NA Excluded E1 6 0.000149927831955126 6.34839648350881e-05 0.000122044434619243 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_140881762_140881779 ENSMUST00000211179.1 1 chr7:140878145-140882157 1 17 ACTGTGGGGTCCGGGAG 1 77.1060283879 0.386952390096 9.07448338694e-10 chr7_-_140881762_140881779|77.1060283879|0.386952390096 6.44661102278121e-10 IN ENSMUST00000211179 Novel NA Excluded E4 11 -0.0066368410083118 -0.00565388645563242 0.0333996812564885 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_141431390_141431394 ENSMUST00000174095.1 3 chr7:141431258-141431501 3 4 AGGT 1 63.8882366218 0.0199999315664 0.00357942133106 chr7_-_141431390_141431394|63.8882366218|0.0199999315664 0.00357907904668076 IN ENSMUST00000174095 Novel NA Included I2 10 -0.00639759936519987 -0.000224298861961726 0.0117898375605609 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_141434300_141434329 ENSMUST00000172654.7 0 chr7:141434223-141434530,chr7:141434025-141437568,chr7:141434025-141434586 0 29 GTGGCACAAGACTTGAAATTGCTTTGAAG 1 92.0390035826 -0.155000005933 0 chr7_-_141434300_141434329|92.0390035826|-0.155000005933 0 IN ENSMUST00000172654 Annotated Alt3 Excluded E1 6 -4.86928535582697e-05 0.000139591763295425 0.000194086583401116 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_143521400_143521430 ENSMUST00000072727.6 0 chr7:143520440-143524160 0 30 TTTGAAGAAGGCGAGGAAGGTGAAGAGGAG 1 88.7667690625 3.04882353878 0 chr7_-_143521400_143521430|88.7667690625|3.04882353878 0 IN ENSMUST00000072727 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_143524693_143524716 ENSMUST00000072727.6 0 chr7:143524280-143527165 0 23 CCTCTGGAGATGGAGAATCTCTG 1 86.4504065399 1.66574072314 4.0614622776e-11 chr7_-_143524693_143524716|86.4504065399|1.66574072314 7.22866211333439e-12 IN ENSMUST00000072727 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_143541578_143541603 ENSMUST00000209098.1 21 chr7:143540246-143541747 21 25 AAATTGATCTCACCAGCTGTCTCAG 1 75.7272041792 -0.236620689004 0 chr7_-_143541578_143541603|75.7272041792|-0.236620689004 0 IN ENSMUST00000209098 Novel NA Excluded E1 6 0.00141912864472828 0.000256943780585155 0.0028863097393941 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_143546128_143546146 ENSMUST00000208190.1 14 chr7:143541778-143548736,chr7:143541778-143549041 1,13 18 GAGACTCAGTCTAGTGAG 1 83.6295051877 -0.0185909055343 3.94265953219e-10 chr7_-_143546128_143546146|83.6295051877|-0.0185909055343 9.8381636171041e-11 IN ENSMUST00000208190 Novel Alt5 Excluded E1 6 -6.7758711346314e-05 0.000123391906902498 -0.000364016224738521 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_143611615_143611633 ENSMUST00000208124.1 0 chr7:143610060-143611730 0 18 GAGAGAATATTCAGCTCT 1 83.8604198317 -0.0390000018207 2.39815559633e-08 chr7_-_143611615_143611633|83.8604198317|-0.0390000018207 5.78438552611971e-09 IN ENSMUST00000208124 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_14437484_14437514 ENSMUST00000210366.1 57 chr7:14428050-14438455 57 30 GGGTCCCCATCCTCAGTCCAATGGTTGGCT 1 80.0820237265 None 0 chr7_-_14437484_14437514|80.0820237265|None 0 IN ENSMUST00000210366 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_144488690_144488717 ENSMUST00000182958.7 24 chr7:144485208-144491451 24 27 GAAGACGAGGAGGGAAGCTGGGCTCAG 1 74.7823116759 4.82229033665 0 chr7_-_144488690_144488717|74.7823116759|4.82229033665 0 IN ENSMUST00000182958 Annotated NA Neuronal N4 13 0.0301182100057184 0.0133409512404013 0.0155437567159864 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr7_-_144502866_144502896 ENSMUST00000182958.7 408 chr7:144500403-144504902 408 30 CCTAGTGACTTAAGGAAGCACCGGAGACAG 1 76.3545545203 4.35488233354 0 chr7_-_144502866_144502896|76.3545545203|4.35488233354 0 IN ENSMUST00000182958 Annotated NA Neuronal N3 17 0.058370342955706 0.0244043541424599 0.0219979574316482 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr7_-_144619474_144619486 ENSMUST00000118556.8 78 chr7:144618920-144621667 78 12 GAAGCTGTCAAG 1 77.8274985436 2.37649997696 6.35860285758e-07 chr7_-_144619474_144619486|77.8274985436|2.37649997696 4.11599441418886e-07 IN ENSMUST00000118556 Annotated NA Non-Neuronal NN1 23 -0.0555534843090884 -0.0587794199688949 0.15387350228485 TRUE TRUE TRUE 10.5 -1 FALSE FALSE FALSE chr7_-_15920448_15920473 ENSMUST00000044355.9 0 chr7:15920358-15922251 0 25 TGGAGCTTGAGGCTATAAGCCCAAG 1 80.850484736 1.58627587794 1.65556457432e-12 chr7_-_15920448_15920473|80.850484736|1.58627587794 6.5580874064608e-13 IN ENSMUST00000044355 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_19429105_19429118 ENSMUST00000085715.6 1 chr7:19428118-19429325 1 13 GGATCCAAAATCA 1 78.84731401 4.02805883043 6.92671140445e-08 chr7_-_19429105_19429118|78.84731401|4.02805883043 3.85381276890584e-08 IN ENSMUST00000085715 Annotated NA Neuro-Muscular NM2 9 0.0570498107985518 -0.0153506948627287 0.0149377955178495 TRUE TRUE TRUE 13.5 1 12.5 1 FALSE FALSE FALSE chr7_-_19581380_19581405 ENSMUST00000086041.6 0 chr7:19581158-19582231 0 25 GTCGAGAGTACAGTTCCTCCCGAAG 1 93.9000278389 2.18696552486 9.27258270167e-13 chr7_-_19581380_19581405|93.9000278389|2.18696552486 1.83519865970538e-13 IN ENSMUST00000086041 Annotated NA Included I1 1 2.77951647992214e-109 -4.64561726589606e-110 1.41848053237151e-109 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_19622925_19622934 ENSMUST00000049912.14 201 chr7:19619842-19627922 201 9 ATGAATTGG 1 85.2756351939 1.74876923286 0.000120200443594 chr7_-_19622925_19622934|85.2756351939|1.74876923286 2.40963546138673e-05 IN ENSMUST00000049912 Annotated NA Included I2 10 0.00616540235184701 0.00326719468267425 -0.000379322296472032 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_24314381_24314411 ENSMUST00000126580.7 0 chr7:24312495-24316518 0 30 CCTGATCTCTCAACAAGGACTGAGTGGAAG 1 84.7369149203 0.18267646914 0 chr7_-_24314381_24314411|84.7369149203|0.18267646914 0 IN ENSMUST00000126580 Annotated Alt3 Excluded E2 3 0.00130714704019611 -0.0016795619040922 0.0013331571220757 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_25630999_25631014 ENSMUST00000205808.1 0 chr7:25630433-25631341 0 15 CAGTCACGAAAGAAG 1 70.7380944218 3.68721050965 8.2794542644e-07 chr7_-_25630999_25631014|70.7380944218|3.68721050965 8.1575693300362e-07 IN ENSMUST00000205808 Annotated Alt5 Excluded E1 6 0.000883087669611011 0.000190786325751248 0.00216553047892228 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_25773098_25773125 ENSMUST00000085948.10 574 chr7:25770765-25773342,chr7:25770765-25774514 482,92 27 GGCAAGGACAGCCACTCCACCATCTGG 1 86.3143367714 1.34516129426 0 chr7_-_25773098_25773125|86.3143367714|1.34516129426 0 IN ENSMUST00000085948 Annotated NA Included I2 10 0.00964805367134168 0.00778940321945603 -0.0145091278696685 TRUE FALSE TRUE FALSE FALSE FALSE chr7_-_27195904_27195907 ENSMUST00000122202.7 1 chr7:27195556-27195993 1 3 GAT 1 61.8737411345 -0.474571419614 0.0259044876219 chr7_-_27195904_27195907|61.8737411345|-0.474571419614 0.0259040700183821 IN ENSMUST00000122202 Novel NA Excluded E1 6 0.000179188235102518 -0.000434215766453692 0.00234210435102659 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_28288470_28288495 ENSMUST00000056589.13 0 chr7:28288354-28290322 0 25 TGGCCTCTGAAGCTATGGCCTTCGG 1 82.8276913753 1.50410346404 1.7221779558e-12 chr7_-_28288470_28288495|82.8276913753|1.50410346404 4.86832796298131e-13 IN ENSMUST00000056589 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_28310078_28310100 ENSMUST00000081946.4 0 chr7:28308412-28310295 0 22 ATTCCTGATGAATTCGACAGCG 1 87.361152126 2.98946151739 1.05558228825e-10 chr7_-_28310078_28310100|87.361152126|2.98946151739 1.75485181941326e-11 IN ENSMUST00000081946 Annotated Alt3 Included I2 10 0.000261808203039933 -0.00110250752295032 -0.000212577943563158 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_28330017_28330029 ENSMUST00000207563.1 0 chr7:28329652-28330579 0 12 AAGAGATTGAAG 1 81.4461395563 2.99668744206 5.4298345854e-05 chr7_-_28330017_28330029|81.4461395563|2.99668744206 1.93810267429262e-05 IN ENSMUST00000207563 Annotated NA Included I1 1 1.00018730580867e-116 6.68409944239874e-118 1.53378663497341e-116 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_28364297_28364314 ENSMUST00000094644.10 0 chr7:28362999-28364470 0 17 ATAAGCCTCAAGTCAAG 1 87.2510809709 1.02885714138 8.44011047718e-08 chr7_-_28364297_28364314|87.2510809709|1.02885714138 1.41310271262185e-08 IN ENSMUST00000094644 Annotated Alt3 Included I2 10 0.00171587846335707 0.00192243504792092 0.00855223607077283 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_28895120_28895131 ENSMUST00000068045.13 1 chr7:28894659-28895431 1 11 GATACAGCCTG 1 80.4019482318 4.0136666591 7.05010940738e-07 chr7_-_28895120_28895131|80.4019482318|4.0136666591 3.020966281575e-07 IN ENSMUST00000068045 Novel Alt5 Excluded E1 6 0.00199757512225277 -0.000739299647283606 -0.000523260923183238 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_29038540_29038570 ENSMUST00000214374.1 0 chr7:29038428-29040387,chr7:29038428-29039976 0 30 GAACATGTTTGGACGCGGGTTCCCTCAGAG 1 83.5322779692 1.30717647665 0 chr7_-_29038540_29038570|83.5322779692|1.30717647665 0 IN ENSMUST00000214374 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_29044918_29044936 ENSMUST00000214374.1 0 chr7:29043929-29045603 0 18 TCATCAATCGCCAAAACG 1 74.8594443485 2.96931818128 2.40397636242e-08 chr7_-_29044918_29044936|74.8594443485|2.96931818128 2.09416265439799e-08 IN ENSMUST00000214374 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_29056233_29056248 ENSMUST00000214374.1 0 chr7:29055059-29056923,chr7:29055068-29056919 0 15 GCAGGAGACGTACAG 1 74.5850605752 1.46878948082 1.70618150197e-06 chr7_-_29056233_29056248|74.5850605752|1.46878948082 1.51092241607031e-06 IN ENSMUST00000214374 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_29155884_29155902 ENSMUST00000134176.7 2 chr7:29155809-29156030 2 18 TGCTGGGCGCCGGCCACG 1 66.8257346775 0.568500002846 1.13118403533e-11 chr7_-_29155884_29155902|66.8257346775|0.568500002846 1.13004050561472e-11 IN ENSMUST00000134176 Novel Alt5 Excluded E4 11 0.00154306245926964 0.00218612229196919 -0.0172970168136836 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_29260056_29260078 ENSMUST00000108236.4 1 chr7:29259452-29260370 1 22 GGACTCTGCTGCAGGAGCCTGG 1 81.9184649645 1.11611539756 1.98063787593e-13 chr7_-_29260056_29260078|81.9184649645|1.11611539756 6.51700915454967e-14 IN ENSMUST00000108236 Novel Alt5 Excluded E1 6 0.00153032388451274 0.00056961011446137 0.000353428446406499 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_30065247_30065250 ENSMUST00000182746.1 68 chr7:30062318-30066240 68 3 CAG 1 64.3271401736 None 0.212553564707 chr7_-_30065247_30065250|64.3271401736|None 0.212524136337934 RESCUED ENSMUST00000182746 Novel NA Excluded E4 11 0.000579945923958223 -0.0037466908757499 -0.00567257107114849 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_30418618_30418642 ENSMUST00000208740.1 50 chr7:30418219-30419703 50 24 TGGCTGCAAGTCAGACATCGGCAG 1 83.1724405858 0.673607141578 0 chr7_-_30418618_30418642|83.1724405858|0.673607141578 0 IN ENSMUST00000208740 Annotated Alt3 Included I2 10 0.00470974303138845 0.0139792815075587 0.00429992166633339 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_30436178_30436202 ENSMUST00000006828.8 0 chr7:30436043-30436786 0 24 ATCCCCCAGTGACCCTTCCAAAAG 1 87.4485047051 1.21824998861 2.54019028034e-12 chr7_-_30436178_30436202|87.4485047051|1.21824998861 4.19997370215697e-13 IN ENSMUST00000006828 Annotated NA Included I1 1 4.3022329915761e-55 -1.66968204258518e-54 -1.07117492285966e-54 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_30557264_30557294 ENSMUST00000043975.10 0 chr7:30557185-30557625 0 30 GGATTGTTCCATTGCTGCCACAGGCAAAAG 1 87.9894001616 1.50570586883 0 chr7_-_30557264_30557294|87.9894001616|1.50570586883 0 IN ENSMUST00000043975 Annotated NA Included I1 1 -3.59144491539402e-149 3.57434753494002e-149 8.1565797859342e-149 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_30562400_30562428 ENSMUST00000207031.1 11 chr7:30562134-30562795 11 28 GTGGATTTGCGTTCCTGCCTTTTCTTTG 1 84.9173860393 4.03228132601 0 chr7_-_30562400_30562428|84.9173860393|4.03228132601 0 IN ENSMUST00000207031 Novel Alt3 Excluded E3 2 -0.00567218514112338 0.00641113438566033 -0.0145307162794292 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_30661050_30661070 ENSMUST00000146232.1 2 chr7:30660328-30661628 2 20 ATTTATTTATTATGTACAGT 1 73.2181826085 0.226374987513 4.53326265415e-12 chr7_-_30661050_30661070|73.2181826085|0.226374987513 4.26259028074583e-12 IN ENSMUST00000146232 Novel NA Excluded E3 2 -0.00251035936449716 -0.00303818954101261 0.00393819347005832 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_30662935_30662960 ENSMUST00000146232.1 0 chr7:30661974-30663094 0 25 GCATGCCTATCAGGACAATCCAAAG 1 90.3092844087 1.44575860043 9.69002655893e-13 chr7_-_30662935_30662960|90.3092844087|1.44575860043 1.50768286744096e-13 IN ENSMUST00000146232 Annotated NA Included I1 1 7.56882615619745e-41 -3.26591444598404e-41 4.01166751068756e-40 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_30962097_30962121 ENSMUST00000147431.1 0 chr7:30959314-30965968,chr7:30959314-30973079 0 24 ACAAGTGCTGTTGCCCTGAGGCCC 1 77.5444485658 3.13685711859 2.35402808357e-11 chr7_-_30962097_30962121|77.5444485658|3.13685711859 1.58282276174759e-11 IN ENSMUST00000147431 Annotated Alt5 Excluded E3 2 0.00268830783620343 0.00160304761200638 -0.00153187995775849 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_31035385_31035415 ENSMUST00000161805.7 0 chr7:31035283-31036435 0 30 ATTCGAATGAGAACAACCCCTTCTACTACG 1 85.246460123 0.669852929957 0 chr7_-_31035385_31035415|85.246460123|0.669852929957 0 IN ENSMUST00000161805 Annotated NA Included I1 1 -1.40638081072692e-105 -3.22449522962075e-106 -1.92908895894146e-105 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_31047372_31047402 ENSMUST00000206341.1 0 chr7:31045027-31051355 0 30 TTCCTGAAGAAACAGATCCTTTTTTCTATG 1 85.6672716782 1.47373529129 0 chr7_-_31047372_31047402|85.6672716782|1.47373529129 0 IN ENSMUST00000206341 Annotated NA Included I1 1 -1.86742000551227e-11 2.44243396800795e-10 4.16788775909316e-11 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_31072074_31072098 ENSMUST00000167369.7 0 chr7:31071366-31072180 0 24 ATAAAAATGATCCTTTCTACTATG 1 89.3802396658 1.97221432507 2.79243295154e-12 chr7_-_31072074_31072098|89.3802396658|1.97221432507 4.32320845789036e-13 IN ENSMUST00000167369 Annotated Alt3 Included I2 10 0.00235944181660573 0.000516035038711541 0.00315883630484029 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_31133219_31133231 ENSMUST00000185985.6 1304 chr7:31132865-31133990 1304 12 GATCTGTGTGAG 1 79.4920658136 2.46781251207 2.58209150505e-07 chr7_-_31133219_31133231|79.4920658136|2.46781251207 1.29324784103879e-07 IN ENSMUST00000185985 Annotated NA Neuronal N6 15 0.0197585230386409 0.00846556271637138 0.0110327164836067 TRUE TRUE TRUE FALSE FALSE FALSE chr7_-_31142550_31142575 ENSMUST00000185514.6 0 chr7:31134225-31142807,chr7:31142463-31142803 0 25 CAACATCTTCCGCTGGGAGACCACA 1 79.3490907028 4.97127581465 2.76223488527e-13 chr7_-_31142550_31142575|79.3490907028|4.97127581465 1.4166445794217e-13 IN ENSMUST00000185514 Annotated Alt5 Excluded E3 2 -0.00223345415009446 -0.00107956010885221 -0.00264909270607254 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_31143546_31143567 ENSMUST00000185985.6 0 chr7:31142888-31143656 0 21 AAGATGCAGAGCTGGTACAGT 1 84.6102018905 3.86040009737 1.68938640854e-10 chr7_-_31143546_31143567|84.6102018905|3.86040009737 3.67512686949567e-11 IN ENSMUST00000185985 Annotated NA Included I1 1 -5.94015306296987e-136 7.02887220579656e-136 1.43585708552269e-135 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_4010729_4010749 ENSMUST00000108600.8 3 chr7:4010632-4028706 3 20 GCACCGTCAGAAAAAGCAGG 1 84.5135270993 0.107875003867 6.41264819023e-11 chr7_-_4010729_4010749|84.5135270993|0.107875003867 1.41281430998674e-11 IN ENSMUST00000108600 Novel Alt5 Excluded E2 3 -0.000764963143144449 -0.00491344772361688 -0.00189184798940294 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_44512091_44512121 ENSMUST00000165208.3 0 chr7:44511948-44512460 0 30 AAATCAAAGTGGAGTATGTACCTAAGCAAG 1 89.056793436 2.41917644386 0 chr7_-_44512091_44512121|89.056793436|2.41917644386 0 IN ENSMUST00000165208 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_44552696_44552719 ENSMUST00000209017.1 11 chr7:44552620-44553578 11 23 TTCTCTGGACACTCCCGTGCCTG 1 79.6581392941 1.24911112801 0 chr7_-_44552696_44552719|79.6581392941|1.24911112801 0 IN ENSMUST00000209017 Annotated Alt5 Excluded E4 11 -0.00198777399894382 -0.00144446144527477 -0.00995433551247661 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_44657416_44657440 ENSMUST00000107899.9 197 chr7:44655684-44657934 197 24 GCCTCCGTCAGCACCATGTCTTAT 1 77.3374609326 1.13053571726 0 chr7_-_44657416_44657440|77.3374609326|1.13053571726 0 IN ENSMUST00000107899 Annotated NA Non-Neuronal NN1 23 -0.0502285712632281 -0.0563699100209811 0.00651918537371059 TRUE TRUE FALSE FALSE FALSE FALSE chr7_-_44658213_44658241 ENSMUST00000107899.9 0 chr7:44658037-44660907 0 28 ATCGTGAGGATCAATCCATTCTCTGCAC 1 80.4387191792 4.12062498368 0 chr7_-_44658213_44658241|80.4387191792|4.12062498368 0 IN ENSMUST00000107899 Annotated NA Included I1 1 4.5913022024662e-06 3.75444754900026e-05 -7.95696001382825e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_44903461_44903474 ENSMUST00000167930.7 2 chr7:44903200-44903740 2 13 CTCCAGCTGCTGA 1 72.0136837643 2.13570587425 3.04426062137e-08 chr7_-_44903461_44903474|72.0136837643|2.13570587425 2.94913653497986e-08 IN ENSMUST00000167930 Novel Alt5 Excluded E1 6 0.00115949233371839 -0.000999249128716423 0.000138774774060307 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_4512264_4512283 ENSMUST00000071798.12 0 chr7:4510380-4513810,chr7:4510446-4513580,chr7:4510380-4513580 0 19 AAGAGCGCCCCAAACCCAG 1 75.3443720063 2.8713912993 1.13177519578e-08 chr7_-_4512264_4512283|75.3443720063|2.8713912993 9.53686840610146e-09 IN ENSMUST00000071798 Annotated NA Included I1 1 -1.06662260627693e-15 -1.30247075142765e-17 1.4235431956691e-16 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_4512264_4512286 ENSMUST00000108587.8 0 chr7:4510380-4513810,chr7:4510446-4513580,chr7:4510380-4513580 0 22 AAGAAGAGCGCCCCAAACCCAG 1 80.0963868384 2.79380768337 1.76669345819e-10 chr7_-_4512264_4512286|80.0963868384|2.79380768337 7.98292543180423e-11 IN ENSMUST00000108587 Annotated NA Included I1 1 -6.95048227861963e-14 1.48670052457614e-15 2.71669604789823e-14 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_45126525_45126537 ENSMUST00000211037.1 4 chr7:45126017-45126708 4 12 AAAAAGCGGATG 1 74.9784233951 4.09937501326 1.57160672143e-07 chr7_-_45126525_45126537|74.9784233951|4.09937501326 1.35863572503503e-07 IN ENSMUST00000211037 Novel Alt3 Excluded E1 6 0.000424192933758468 9.12782489716013e-05 0.00120838231351162 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_4513810_4513837 ENSMUST00000071798.12 0 chr7:4512286-4514212,chr7:4512283-4514212,chr7:4512280-4514212,chr7:4513613-4514212 0 27 ATGAGGAAGCGGTGGAGGAGGAGGAAG 1 85.4086666119 0.921838686186 0 chr7_-_4513810_4513837|85.4086666119|0.921838686186 0 IN ENSMUST00000071798 Annotated NA Included I1 1 2.16345205248126e-17 1.92831185731432e-18 1.30054959261297e-17 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_4522069_4522082 ENSMUST00000098859.9 0 chr7:4521902-4522304 0 13 GAGCAGCGATGCG 1 85.6317091658 0.975999989054 5.73693030415e-06 chr7_-_4522069_4522082|85.6317091658|0.975999989054 1.10542221209986e-06 IN ENSMUST00000098859 Annotated Alt3 Other O2 21 -0.0025513329523266 -0.000622534832172752 -0.00920503992309352 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_45343552_45343579 ENSMUST00000210248.1 137 chr7:45342501-45343740 137 27 GAGACCAAGGAGATCAGCTGGGAGCAG 1 74.8292334763 4.12467750234 0 chr7_-_45343552_45343579|74.8292334763|4.12467750234 0 IN ENSMUST00000210248 Annotated NA Neuro-Muscular NM1 12 0.0719089425161801 -0.2111533281869 -0.0746233989182839 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE TRUE chr7_-_45808729_45808732 ENSMUST00000107729.9 1748 chr7:45808449-45810126 1748 3 GAG 1 82.3107229296 2.9357142789 0.0969088791959 chr7_-_45808729_45808732|82.3107229296|2.9357142789 0.0298284926457526 IN ENSMUST00000107729 Annotated NA Neuro-Muscular NM5 7 0.0212595160726237 -0.00340240523032117 -0.0272268244132843 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_45812846_45812874 ENSMUST00000210898.1 1 chr7:45812298-45813008 1 28 GAAGAAATTCAACATGGACCCCAAAAAG 1 73.6992432746 4.38993747276 0 chr7_-_45812846_45812874|73.6992432746|4.38993747276 0 IN ENSMUST00000210898 Novel Alt5 Excluded E3 2 -0.00148659729346655 -6.20461134321314e-06 -0.00363085469610907 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_46225409_46225434 ENSMUST00000078680.12 0 chr7:46225241-46225542 0 25 ACATCGGACTGATCCCTGTGAAGAG 1 86.6169979211 4.0567931389 2.41584530158e-13 chr7_-_46225409_46225434|86.6169979211|4.0567931389 4.2410519540681e-14 IN ENSMUST00000078680 Annotated NA Included I1 1 5.75629569578624e-07 9.97671837646052e-07 -2.1069422252275e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_4664213_4664239 ENSMUST00000079970.5 7 chr7:4663492-4664519 7 26 AATTGGAAACCTACTTTAAAGGCATT 1 73.6728648673 None 0 chr7_-_4664213_4664239|73.6728648673|None 0 IN ENSMUST00000079970 Novel NA Excluded E1 6 0.000214998499571972 9.47232303764861e-05 0.00014577154850888 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_46892007_46892011 ENSMUST00000014546.14 1 chr7:46891161-46892357 1 4 GCAG 1 68.6442565524 0.210374999791 0.0179642634677 chr7_-_46892007_46892011|68.6442565524|0.210374999791 0.0178969671332952 IN ENSMUST00000014546 Novel NA Excluded E3 2 0.00164392259536363 -0.0142249326941543 -0.0313192505264418 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_47467584_47467587 ENSMUST00000119798.2 2 chr7:47464971-47489487 2 3 CAG 1 64.260400041 None 0.775965741247 chr7_-_47467584_47467587|64.260400041|None 0.775864144663945 RESCUED ENSMUST00000119798 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr7_-_59452699_59452717 ENSMUST00000188262.1 2 chr7:59451378-59453123 2 18 AGAAACACAGATAATCAG 1 79.7171454434 -0.0744090899825 9.79412106972e-11 chr7_-_59452699_59452717|79.7171454434|-0.0744090899825 4.72276662222271e-11 IN ENSMUST00000188262 Novel NA Excluded E1 6 -0.000808627219049068 -0.00089140900423193 0.00568862434400222 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_59986543_59986548 ENSMUST00000098402.4 976 chr7:59985983-59986771 976 5 TTATG 1 74.9677201146 -0.114777775688 0.00296724384207 chr7_-_59986543_59986548|74.9677201146|-0.114777775688 0.00256694695954018 IN ENSMUST00000098402 Novel NA Excluded E1 6 0.000216413193044224 0.000165615616640999 -0.000193015625588617 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_59993661_59993681 ENSMUST00000098402.4 1316 chr7:59988747-59995405 1316 20 AGAGAATCTTCTGATATGAG 1 80.7613367679 0.0354166645557 2.35687025452e-11 chr7_-_59993661_59993681|80.7613367679|0.0354166645557 9.48363609865055e-12 IN ENSMUST00000098402 Novel NA Excluded E1 6 0.000784290054670334 -0.000693337985148267 0.00176863449380513 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_60003044_60003062 ENSMUST00000059305.16 12 chr7:59999413-60005035 12 18 GCACCTGATGCAGTAGAG 1 83.2430477101 0.0825909227133 3.18323145621e-10 chr7_-_60003044_60003062|83.2430477101|0.0825909227133 8.4247830933748e-11 IN ENSMUST00000059305 Novel NA Excluded E1 6 9.94526830482945e-06 5.00096559263845e-06 5.64610960339876e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_60115193_60115219 ENSMUST00000098402.4 8 chr7:59999413-60132249 8 26 GTGGCTGTATCAGTGTGGGATTATAT 1 80.7806026727 0.150333330035 0 chr7_-_60115193_60115219|80.7806026727|0.150333330035 0 IN ENSMUST00000098402 Novel NA Excluded E1 6 -0.000597883874034335 0.00185601628280726 -0.00174185392177353 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_61539527_61539530 ENSMUST00000209115.1 1 chr7:61535488-61604515 1 3 AGG 3 70.1161647743 None 0.985194773955 chr7_-_61593667_61593670|61.6640258912|-0.207857142602,chr7_-_61539527_61539530|70.1161647743|None,chr7_-_61558200_61558203|67.0784702029|-0.218571415969 0.991791288216234 RESCUED ENSMUST00000209115 Novel NA Excluded E2 3 0.000618465437692364 0.00154538597073441 -0.00303821443342605 TRUE TRUE TRUE 12.5 -1 FALSE FALSE FALSE chr7_-_62207076_62207102 ENSMUST00000208965.1 24 chr7:62206803-62207362 24 26 ATTTATTGCAACATTTAGCAAGAATG 1 71.8632508839 None 0 chr7_-_62207076_62207102|71.8632508839|None 0 IN ENSMUST00000208965 Novel NA Excluded E2 3 0.00758198778651398 -0.00635591038324547 0.00249197254028376 TRUE FALSE TRUE 14.5 1 FALSE FALSE FALSE chr7_-_6324240_6324243 ENSMUST00000062765.13 1 chr7:6323742-6325452 1 3 CAA 1 62.1349011775 0.247857142772 0.0987260741307 chr7_-_6324240_6324243|62.1349011775|0.247857142772 0.0987240541693784 IN ENSMUST00000062765 Novel NA Excluded E3 2 -0.00277825877080157 0.00422425202560721 -0.00706867105665191 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_65307615_65307645 ENSMUST00000102592.9 2 chr7:65306536-65311003 2 30 CTATGACTACTTGAAAAGGAACATCAAGTG 1 75.8672099928 3.31567649741 0 chr7_-_65307615_65307645|75.8672099928|3.31567649741 0 IN ENSMUST00000102592 Novel NA Excluded E2 3 0.0027415422590628 -0.00296772002968598 0.00461804318082987 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_67244520_67244544 ENSMUST00000107476.7 631 chr7:67240440-67251656 631 24 TCGGAGGAAGAGGAATTGGAGTTG 1 76.745431417 4.09310711707 0 chr7_-_67244520_67244544|76.745431417|4.09310711707 0 IN ENSMUST00000107476 Annotated NA Neuro-Muscular NM2 9 0.0601275191033632 -0.0466272243335748 0.0282289859068961 TRUE TRUE TRUE 12.5 1 12.5 1 TRUE TRUE TRUE chr7_-_67348417_67348437 ENSMUST00000156690.7 59 chr7:67316982-67349848,chr7:67316982-67349868 29,30 20 AGAGGTGTTGACTAGAGATG 1 77.3878354041 0.064666668574 1.16678222639e-10 chr7_-_67348417_67348437|77.3878354041|0.064666668574 8.00544075474363e-11 IN ENSMUST00000156690 Missing in GENCODE NA Excluded E1 6 0.00207154449206904 0.00145243954415538 0.00019533644696245 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_67622570_67622597 ENSMUST00000053950.9 55 chr7:67619111-67628294,chr7:67619111-67641103 40,15 27 TTTGGGGTTGTTTTCATCACTTGGATG 1 91.2981984687 0.34799999972 0 chr7_-_67622570_67622597|91.2981984687|0.34799999972 0 IN ENSMUST00000053950 Annotated NA Excluded E2 3 -0.00167316070628946 0.00187944729477973 0.00593993888307762 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_73976703_73976720 ENSMUST00000191970.1 5 chr7:73972046-74013396 5 17 GAATTCTGGAGGCAGAG 1 81.0841960436 3.01490474883 9.39712663239e-09 chr7_-_73976703_73976720|81.0841960436|3.01490474883 3.57316010113351e-09 IN ENSMUST00000191970 Novel Alt3 Excluded E1 6 0.000971541293969579 -0.00167584112794288 0.000206156353598008 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_78453322_78453346 ENSMUST00000039431.13 0 chr7:78451955-78460280 0 24 AGAGCACAGATTTCTTTGACTTTG 1 87.7159140828 2.30528572042 2.9476865393e-11 chr7_-_78453322_78453346|87.7159140828|2.30528572042 4.80038231387425e-12 IN ENSMUST00000039431 Annotated NA Included I1 1 3.67111657966651e-06 -1.87690403312677e-05 -8.38787750611729e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_79383933_79383962 ENSMUST00000179243.2 0 chr7:79383740-79384658 0 29 TGTCTTCAAGAGGCAGTATGTCAGACGGG 1 82.7969971291 1.0109394068 0 chr7_-_79383933_79383962|82.7969971291|1.0109394068 0 IN ENSMUST00000179243 Annotated Alt5_3 Other O1 4 -0.00165350559836329 0.0042280105869573 0.016810621423517 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_80317452_80317482 ENSMUST00000130888.2 0 chr7:80317050-80318858 0 30 GCACAGGAGAACTCTATACCTGGGGCTGGG 1 86.2326810996 3.50823527985 0 chr7_-_80317452_80317482|86.2326810996|3.50823527985 0 IN ENSMUST00000130888 Annotated NA Included I1 1 5.15638002658605e-07 -3.21933706025322e-06 -1.08149702136224e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_81551896_81551919 ENSMUST00000042318.5 0 chr7:81550025-81552962 0 23 GATGCAGTGGCTATGACTGACAG 1 87.5118266933 2.30162963213 4.13535872212e-11 chr7_-_81551896_81551919|87.5118266933|2.30162963213 6.81210643449504e-12 IN ENSMUST00000042318 Annotated NA Included I1 1 -5.88826967494924e-05 1.11562787626418e-05 -0.0001140027293639 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_84605642_84605646 ENSMUST00000128460.1 44 chr7:84602191-84606549 44 4 CAAC 1 76.4574441195 2.0087500196 0.0642212782439 chr7_-_84605642_84605646|76.4574441195|2.0087500196 0.0490435517060237 IN ENSMUST00000128460 Novel NA FALSE TRUE FALSE FALSE FALSE FALSE chr7_-_97575686_97575691 ENSMUST00000124552.2 95 chr7:97550741-97579365,chr7:97558226-97579365,chr7:97565300-97579365 15,4,76 5 GCAAG 1 84.1562101659 -0.0241111152702 0.0522073147018 chr7_-_97575686_97575691|84.1562101659|-0.0241111152702 0.0120739150548104 IN ENSMUST00000124552 Novel Alt3 Excluded E1 6 0.000209996338623847 0.000551056677253236 -3.59932323278762e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_97577493_97577523 ENSMUST00000072725.11 32 chr7:97575691-97579365 32 30 GGAATGAACTTGAGTGGCCAGGCTTCCTCT 1 74.0810741729 0.000970585819553 0 chr7_-_97577493_97577523|74.0810741729|0.000970585819553 0 IN ENSMUST00000072725 Novel NA Excluded E1 6 0.000158460081076502 1.67972219216597e-05 0.000376360060285566 TRUE FALSE FALSE FALSE FALSE FALSE chr7_-_98099473_98099491 ENSMUST00000107128.7 104 chr7:98098371-98102549 104 18 ACCAGCTGTGGAGGACGG 1 82.4524896055 1.43631818247 2.36241248786e-10 chr7_-_98099473_98099491|82.4524896055|1.43631818247 7.10146386140309e-11 IN ENSMUST00000107128 Annotated NA Excluded E3 2 -0.00315307942858175 -0.00400088657511772 0.0461970553547223 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_105305966_105305996 ENSMUST00000212345.1 0 chr8:105305829+105306114 0 30 GCAAAGCCCCTGGCCACTGTACTGAAGGAG 1 80.3834764414 3.0868235089 0 chr8_+_105305966_105305996|80.3834764414|3.0868235089 0 IN ENSMUST00000212345 Annotated Alt3 Excluded E4 11 -0.00367780729049601 0.0111494654813119 -0.0161510123316537 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_105615427_105615451 ENSMUST00000043531.9 0 chr8:105615021+105615543 0 24 GGCTTCCTGTATGACTTGGACAAG 1 89.1197356304 3.78350000829 1.75504055733e-12 chr8_+_105615427_105615451|89.1197356304|3.78350000829 2.72448730243013e-13 IN ENSMUST00000043531 Annotated NA Included I1 1 -5.83510096092861e-134 -4.56034946200391e-135 -1.10367783825533e-133 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_106011780_106011801 ENSMUST00000034375.10 2 chr8:106011578+106015823 2 21 TCATCCCATAGAACTCCAAAG 1 73.8271647393 -0.268840002045 3.74811293113e-12 chr8_+_106011780_106011801|73.8271647393|-0.268840002045 3.44557715692417e-12 IN ENSMUST00000034375 Novel NA Excluded E1 6 -9.15069153224727e-05 -0.000922319169180535 0.000549118898202757 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_107170390_107170420 ENSMUST00000034400.4 0 chr8:107169939+107179413 0 30 AGTGACCTTAAACCTAAAGGCGATGACAAG 1 87.0652582116 1.59358825272 0 chr8_+_107170390_107170420|87.0652582116|1.59358825272 0 IN ENSMUST00000034400 Annotated NA Included I1 1 -2.55929704298754e-140 -8.03061575779837e-141 -5.23207612321456e-140 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_107179413_107179442 ENSMUST00000034400.4 0 chr8:107170420+107183577 0 29 GATCCTTCCAAGAACAATTCATGCCAAAG 1 84.8769207339 0.930090928168 0 chr8_+_107179413_107179442|84.8769207339|0.930090928168 0 IN ENSMUST00000034400 Annotated NA Included I1 1 3.48605342965737e-134 2.72448103107455e-135 6.59368182153015e-134 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_109830612_109830621 ENSMUST00000034171.8 1125 chr8:109829675+109832716 1125 9 AATGAAAAG 1 80.7977969749 6.26623082161 4.5119698507e-05 chr8_+_109830612_109830621|80.7977969749|6.26623082161 1.80397823876799e-05 IN ENSMUST00000034171 Annotated NA Neuronal N2 8 0.0479817741556382 0.0113306000815653 -0.0598534632833801 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE FALSE TRUE chr8_+_110727828_110727837 ENSMUST00000052457.14 764 chr8:110727551+110728727 764 9 AGCTACTTG 1 78.0509208913 3.61061534515 1.73299004331e-05 chr8_+_110727828_110727837|78.0509208913|3.61061534515 1.08719621461084e-05 IN ENSMUST00000052457 Missing in GENCODE NA Muscular M2 20 0.0149658254460172 -0.0360321089302651 0.0588645764604575 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_111619205_111619229 ENSMUST00000173819.1 0 chr8:111609388+111621595 0 24 ATGATGTGCTGACTAAAGATGCGG 1 87.0873898335 4.09850001761 4.32684998941e-11 chr8_+_111619205_111619229|87.0873898335|4.09850001761 7.32536253877925e-12 IN ENSMUST00000173819 Annotated Alt3 Excluded E2 3 0.000517089461024568 -0.000612710809716953 0.00250237997273497 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_117379517_117379525 ENSMUST00000166750.8 2 chr8:117377200+117384957 2 8 AGAGTTAG 1 80.3011647621 0.749333345642 0.000461531449122 chr8_+_117379517_117379525|80.3011647621|0.749333345642 0.000201269069538323 IN ENSMUST00000166750 Novel NA Excluded E1 6 0.000393382381320338 -0.000554099974339632 0.00241847632101148 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_117447070_117447097 ENSMUST00000166750.8 0 chr8:117445381+117447399 0 27 AGCTCTCGCCCACGAGAAGTTCACAAA 1 83.8484735896 4.54303235344 0 chr8_+_117447070_117447097|83.8484735896|4.54303235344 0 IN ENSMUST00000166750 Annotated NA Included I1 1 -2.70509197511628e-53 -1.032482093769e-51 -1.07539537197276e-52 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_11802001_11802013 ENSMUST00000110909.8 1 chr8:11800868+11805200 1 12 GGGCTGTGGTGT 1 67.5681625468 0.0806875051931 1.00489655319e-06 chr8_+_11802001_11802013|67.5681625468|0.0806875051931 1.00314195738971e-06 IN ENSMUST00000110909 Novel NA Excluded E1 6 -1.54572644283241e-05 -0.000450249423926789 0.000188652700026144 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_119450081_119450106 ENSMUST00000098363.9 0 chr8:119447264+119452081 0 25 ATTTTCCGCCGCGCCGATAAAAATG 1 85.7378097491 2.44158624986 4.25259827352e-12 chr8_+_119450081_119450106|85.7378097491|2.44158624986 8.10240763371439e-13 IN ENSMUST00000098363 Annotated NA Included I1 1 -3.62532934288831e-09 2.20726596447683e-08 1.08972012713157e-08 TRUE TRUE TRUE 15.5 1 FALSE FALSE FALSE chr8_+_119454200_119454226 ENSMUST00000098363.9 0 chr8:119452190+119454358,chr8:119453138+119454358 0 26 CCACGTGGACACCAAGGAACTGTGTG 1 80.7161758298 3.12983330861 2.64233079861e-13 chr8_+_119454200_119454226|80.7161758298|3.12983330861 1.07136521876328e-13 IN ENSMUST00000098363 Annotated NA Included I1 1 -4.85677388938352e-07 2.84458449984504e-06 1.48959590186298e-06 TRUE TRUE TRUE 15.5 1 FALSE FALSE FALSE chr8_+_120157467_120157497 ENSMUST00000034281.12 0 chr8:120156374+120159958,chr8:119910939+124295357 0 30 AGGGGATGCTGGAGAGCAGGAGGAGAAGAG 1 79.6143939511 3.37458820203 0 chr8_+_120157467_120157497|79.6143939511|3.37458820203 0 IN ENSMUST00000034281 Annotated NA Neuronal N3 17 0.0584524373673804 0.0280828575476699 0.0120747672315464 TRUE TRUE TRUE 11.5 1 14.5 1 FALSE FALSE FALSE chr8_+_120669106_120669110 ENSMUST00000181795.1 5 chr8:120668351+120669308 5 4 GAAG 1 73.9345773376 -0.786125013605 0.0143763601958 chr8_+_120669106_120669110|73.9345773376|-0.786125013605 0.0131547638118733 IN ENSMUST00000181795 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_+_120670512_120670516 ENSMUST00000181795.1 3 chr8:120669382+120672728 3 4 GGAA 1 60.6701399848 -0.0103750061244 0.0496588242473 chr8_+_120670512_120670516|60.6701399848|-0.0103750061244 0.0496585650438405 IN ENSMUST00000181795 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_+_120671171_120671175 ENSMUST00000181795.1 3 chr8:120669382+120672728 3 4 TGTG 1 62.243487684 -0.0211250069551 0.0496588242473 chr8_+_120671171_120671175|62.243487684|-0.0211250069551 0.049657703100368 IN ENSMUST00000181795 Novel NA Other O2 21 -0.0274077963157743 -0.00212932520059177 -0.028127823338919 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_123066349_123066359 ENSMUST00000125975.7 1 chr8:123063034+123066472 1 10 TTTTAAGGAG 1 70.7434805887 -0.00457142932074 1.2755312656e-05 chr8_+_123066349_123066359|70.7434805887|-0.00457142932074 1.25669138559825e-05 IN ENSMUST00000125975 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_+_123366835_123366863 ENSMUST00000010298.6 0 chr8:123363390+123368677,chr8:119910939+124295357 0 28 AGCTGTGTGCACTTCCTGTAGCGTAAAG 1 88.1292333416 2.72621871904 0 chr8_+_123366835_123366863|88.1292333416|2.72621871904 0 IN ENSMUST00000010298 Annotated NA Included I1 1 0.000278877312218204 -0.000205787531729967 -0.000320921294184556 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_123528559_123528568 ENSMUST00000093043.6 1 chr8:123528464+123530826 1 9 GGTCTCACC 1 62.1004780465 0.080076916 3.50022153133e-05 chr8_+_123528559_123528568|62.1004780465|0.080076916 3.50015212203791e-05 IN ENSMUST00000093043 Novel NA Excluded E1 6 -0.00042855944722343 0.000274466549004029 0.000386946397800495 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_12851632_12851656 ENSMUST00000033818.9 21 chr8:12851172+12856933 21 24 ATAATGACCACCAGCACAAGCATG 1 82.2376989356 3.28296430994 0 chr8_+_12851632_12851656|82.2376989356|3.28296430994 0 IN ENSMUST00000033818 Missing in GENCODE NA Excluded E2 3 0.00555653432404228 0.000924849143017065 0.0107944975545986 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_13030556_13030581 ENSMUST00000033820.3 0 chr8:13028804+13030657 0 25 AAGCAGTTCTGGATTGTTTACAGTG 1 85.9126875409 1.68665516792 1.62003743753e-12 chr8_+_13030556_13030581|85.9126875409|1.68665516792 3.0320190802513e-13 IN ENSMUST00000033820 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_+_13045075_13045100 ENSMUST00000063820.11 0 chr8:13039653+13046045 0 25 AAAGAATACTGGACCAAATATAAAG 1 90.1332672354 2.58351727087 5.65147928455e-12 chr8_+_13045075_13045100|90.1332672354|2.58351727087 8.76854144848949e-13 IN ENSMUST00000063820 Annotated NA Included I1 1 -3.7697829492394e-05 2.23360898757346e-05 -0.000158380238654539 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_13064601_13064626 ENSMUST00000211363.1 0 chr8:13063568+13065244,chr8:13063414+13065244 0 25 GATGAGTTCTGGAGACAGTATGGGG 1 86.1814434603 0.686103477689 1.46282985725e-12 chr8_+_13064601_13064626|86.1814434603|0.686103477689 2.66786592817425e-13 IN ENSMUST00000211363 Annotated Alt5 Other O2 21 -0.00662192648834834 -0.00068676058489465 -0.0239439380922014 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_13370268_13370274 ENSMUST00000209885.1 186 chr8:13369580+13370480 186 6 GCACAG 1 78.0322764673 -0.245700005069 0.000848410442496 chr8_+_13370268_13370274|78.0322764673|-0.245700005069 0.000533668349492311 IN ENSMUST00000209885 Novel Alt5 Excluded E1 6 -0.00023555980173798 4.93488410540218e-05 -3.49063395284475e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_13938921_13938948 ENSMUST00000043520.4 907 chr8:13935289+13939562 907 27 GACTACCACCTTGCTTGGTTGTTGAAG 1 70.1097773328 2.6760322865 0 chr8_+_13938921_13938948|70.1097773328|2.6760322865 0 IN ENSMUST00000043520 Annotated Alt5 Neuronal N2 8 0.070816934199382 -0.0265432845114574 -0.0321041108048075 TRUE TRUE TRUE 10.5 1 12.5 1 TRUE TRUE FALSE chr8_+_15130634_15130657 ENSMUST00000033842.3 0 chr8:15129170+15131125 0 23 GGCTGCTGCTTTTGCAGAGAAGA 1 78.9695730941 4.26870361343 2.73985278909e-11 chr8_+_15130634_15130657|78.9695730941|4.26870361343 1.4949930182695e-11 IN ENSMUST00000033842 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_+_22063888_22063892 ENSMUST00000072572.12 1 chr8:22062116+22064999 1 4 GAGG 1 67.4416221505 0.231375003234 0.0429210114373 chr8_+_22063888_22063892|67.4416221505|0.231375003234 0.0428526810153018 IN ENSMUST00000072572 Novel NA Other O1 4 0.00598385007947791 0.00966133559695662 -0.0424921764862593 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_23110346_23110370 ENSMUST00000110688.8 213 chr8:23109729+23111359 213 24 GAACTGCTCACATATCTATAATGG 1 83.5659415125 2.66499999911 0 chr8_+_23110346_23110370|83.5659415125|2.66499999911 0 IN ENSMUST00000110688 Annotated NA Neuronal N1 18 0.0846360128357769 0.0294541986913799 -0.0158357265314697 TRUE TRUE TRUE 11.5 1 FALSE FALSE TRUE chr8_+_25691137_25691161 ENSMUST00000139966.7 1 chr8:25683322+25694688 1 24 CTTCCAAAAAGAGATGTGAGAAAG 1 83.2131130515 5.74764281937 0 chr8_+_25691137_25691161|83.2131130515|5.74764281937 0 IN ENSMUST00000139966 Novel Alt5 Excluded E1 6 0.00123302018893643 -0.00127131537536105 -0.000329831404386015 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_25792309_25792327 ENSMUST00000038421.7 32 chr8:25792225+25793676 32 18 CCTAATGGAAGTGTTGGG 1 76.1541960157 -0.208954544738 8.12292455521e-11 chr8_+_25792309_25792327|76.1541960157|-0.208954544738 6.39208685981885e-11 IN ENSMUST00000038421 Novel Alt5 Excluded E1 6 0.000224636083907327 9.37978749186253e-05 0.000220904528327902 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_31090297_31090302 ENSMUST00000170204.7 1 chr8:31089895+31091804 1 5 TAGAG 1 73.3641615432 0.4120000071 0.0072217356659 chr8_+_31090297_31090302|73.3641615432|0.4120000071 0.0067574595808958 IN ENSMUST00000170204 Novel Alt5 Excluded E2 3 0.000757764522039857 -0.000903506915335489 0.000305123300254512 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_33669152_33669179 ENSMUST00000033992.8 0 chr8:33652570+33669892,chr8:33669034+33669892,chr8:33653779+33669892 0 27 GTGAATGTTGGATGTGTACCCAAAAAG 1 88.9304947267 4.76535485829 0 chr8_+_33669152_33669179|88.9304947267|4.76535485829 0 IN ENSMUST00000033992 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_3640548_3640571 ENSMUST00000160435.1 81 chr8:3639617+3640748,chr8:3639617+3641110 26,55 23 ATTTATTTATTTATTTATTATAT 1 88.4738789721 0.328370357415 0 chr8_+_3640548_3640571|88.4738789721|0.328370357415 0 IN ENSMUST00000160435 Novel NA Neuronal N6 15 0.0124775320800574 0.00328044240993831 0.00783031654924421 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr8_+_40445777_40445804 ENSMUST00000128166.7 0 chr8:40424169+40447050 0 27 TGTCCATGGAAAACATTGGTGAACAAG 1 82.0175911522 3.00596775066 0 chr8_+_40445777_40445804|82.0175911522|3.00596775066 0 IN ENSMUST00000128166 Annotated NA Included I1 1 -2.13193573717422e-57 2.31862422453471e-57 5.62120344875257e-57 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_40489311_40489332 ENSMUST00000128166.7 1 chr8:40474807+40510074 1 21 ACATTAGAAGAATGCTCTTCT 1 63.222354471 None 3.13011838671e-11 chr8_+_40489311_40489332|63.222354471|None 3.12995185325349e-11 IN ENSMUST00000128166 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_+_4521391_4521417 ENSMUST00000008350.15 9 chr8:4521280+4523353 9 26 AGCACAACATATGCAAAGGCACAGAG 1 83.2344850857 0.32600000004 0 chr8_+_4521391_4521417|83.2344850857|0.32600000004 0 IN ENSMUST00000008350 Novel NA Excluded E2 3 0.00314783035746988 0.00424471466797279 -0.00847624893634063 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_45745419_45745446 ENSMUST00000067065.13 0 chr8:45736202+45745785,chr8:45741579+45745716,chr8:45736202+45759052,chr8:45736202+45745716,chr8:45741579+45745785 0 27 GGCGTGAGTCTCAGTCTCCAGATTCAG 1 84.8185360654 3.15051615815 0 chr8_+_45745419_45745446|84.8185360654|3.15051615815 0 IN ENSMUST00000067065 Annotated NA Included I1 1 0.000485713708787338 0.00527727976094666 4.01495371835222e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_45783606_45783626 ENSMUST00000132139.8 2 chr8:45782960+45785268 2 20 AACTGGAGTTTGGACACCCG 1 85.2892732448 5.00499996915 8.11439804238e-12 chr8_+_45783606_45783626|85.2892732448|5.00499996915 1.62414526272414e-12 IN ENSMUST00000132139 Novel Alt5 Excluded E1 6 -0.00089078250119936 -0.00271502821172319 -0.00110515671255835 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_47547971_47547974 ENSMUST00000175692.7 0 chr8:47547838+47550694 0 3 CAT 1 81.1150974501 4.65328572478 1 chr8_+_47547971_47547974|81.1150974501|4.65328572478 0.378186877277253 RESCUED ENSMUST00000175692 Annotated Alt5 Included I1 1 0.000223413815906701 -0.00043717161484661 -0.00118499430942757 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_54959262_54959279 ENSMUST00000033915.8 3 chr8:54955315+55037327 3 17 ATAGATGATATGGCGGG 1 71.2861369075 -0.097142861003 1.86425948012e-08 chr8_+_54959262_54959279|71.2861369075|-0.097142861003 1.82603466791775e-08 IN ENSMUST00000033915 Novel NA Excluded E1 6 5.13140459707998e-06 -2.47060609797827e-05 -1.38195838562343e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_61089314_61089335 ENSMUST00000120689.7 15 chr8:61086527+61089437 15 21 GAATGAGAAAAGTTCACAGAG 1 83.625879883 0.381359997839 2.56239474083e-12 chr8_+_61089314_61089335|83.625879883|0.381359997839 6.39710506789015e-13 IN ENSMUST00000120689 Novel NA Excluded E1 6 0.000573038596247641 0.000222627786307645 0.000727879075237683 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_63113433_63113442 ENSMUST00000117377.7 5544 chr8:62951988+63113542 5544 9 GAAGTAGAG 1 80.3850991968 4.14799995606 0.00240425363965 chr8_+_63113433_63113442|80.3850991968|4.14799995606 0.00103325255318354 IN ENSMUST00000117377 Annotated NA Neuro-Muscular NM3 19 0.0334448563592619 0.00782552857425821 0.00402787531094254 TRUE TRUE TRUE FALSE FALSE FALSE chr8_+_63314520_63314550 ENSMUST00000117377.7 70 chr8:63245213+63328863 70 30 CTATTCATTCCATGACAGAGATGAAGACAT 1 81.6682844157 -0.0585588284166 0 chr8_+_63314520_63314550|81.6682844157|-0.0585588284166 0 IN ENSMUST00000117377 Novel NA Excluded E1 6 0.000668950408188733 -0.000141421131075649 0.000864704407872401 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_63354103_63354132 ENSMUST00000117377.7 66 chr8:63352318+63355211 66 29 TGAGAATTATATGCAAAAGAATTAAATAA 1 79.8861191676 0.097000007941 0 chr8_+_63354103_63354132|79.8861191676|0.097000007941 0 IN ENSMUST00000117377 Novel NA Excluded E1 6 0.000143308459101704 9.77315653856039e-06 -4.34054427564588e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_64964505_64964532 ENSMUST00000026595.12 1 chr8:64964332+64965538 1 27 ACCAACAGGATGAGACAGCCACTACCA 1 79.1614725546 0.220677419626 0 chr8_+_64964505_64964532|79.1614725546|0.220677419626 0 IN ENSMUST00000026595 Novel Alt5 Excluded E1 6 0.00158428313964752 0.000367003850554361 0.000727773811011324 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_65864612_65864635 ENSMUST00000152320.7 14 chr8:65618182+65879329 14 23 AAAAGTCAAGCCAGTTATCACAG 1 80.0518819077 0.225777773669 0 chr8_+_65864612_65864635|80.0518819077|0.225777773669 0 IN ENSMUST00000152320 Novel NA Excluded E1 6 6.28929749608594e-05 -0.000137361190948907 -0.000583694926232303 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_69217513_69217542 ENSMUST00000212681.1 44 chr8:69209159+69226342 44 29 GGATTCCAACCTCCATCCAATGATTGGCT 1 80.3647629639 None 0 chr8_+_69217513_69217542|80.3647629639|None 0 IN ENSMUST00000212681 Novel NA Excluded E2 3 -0.00261069331664507 0.00169383813008062 0.00209310892895532 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_69226717_69226729 ENSMUST00000212312.1 1 chr8:69226469+69227842 1 12 AATACCTGGAAG 1 83.1058040334 0.0560625046492 3.15951133589e-07 chr8_+_69226717_69226729|83.1058040334|0.0560625046492 8.5435652885657e-08 IN ENSMUST00000212312 Novel Alt5 Excluded E1 6 -0.000533166470135864 -0.00172673528572824 -0.000300449511150906 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_71337202_71337217 ENSMUST00000212173.2 111 chr8:71334394+71338906,chr8:71336965+71338906 48,63 15 GGCGAGGGGACAGAG 1 82.9810244994 1.13010526997 6.99219526723e-09 chr8_+_71337202_71337217|82.9810244994|1.13010526997 1.92850191371718e-09 IN ENSMUST00000212173 Missing in GENCODE NA Neuronal N4 13 0.0387730578583538 0.0156512418638679 0.0275060334413742 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_71368549_71368562 ENSMUST00000110053.8 0 chr8:71368111+71368849 0 13 GAACCATCTGGAG 1 84.9875443163 0.968705869444 1.07436789467e-05 chr8_+_71368549_71368562|84.9875443163|0.968705869444 2.22865679877504e-06 IN ENSMUST00000110053 Annotated NA Included I1 1 2.32546010641176e-108 -2.91778357537573e-109 1.62033312686957e-108 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_71368849_71368877 ENSMUST00000110053.8 0 chr8:71368562+71369131 0 28 AATGTGAGGTGGACATGAGGAAACGAGC 1 84.0387502946 0.407281259773 0 chr8_+_71368849_71368877|84.0387502946|0.407281259773 0 IN ENSMUST00000110053 Annotated Alt3 Other O1 4 0.000775435392516074 -0.00174055653220171 0.00374680414063174 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_71401679_71401704 ENSMUST00000002473.9 0 chr8:71399807+71402745 0 25 ATTTGGAAGGCCTCTTCAGCCTCAT 1 79.7656209458 2.64644829364 2.58371102291e-12 chr8_+_71401679_71401704|79.7656209458|2.64644829364 1.2356782264078e-12 IN ENSMUST00000002473 Annotated NA Included I1 1 -2.5930304626944e-139 -8.13646518727533e-140 -5.30103873944789e-139 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_72668321_72668351 ENSMUST00000161386.7 38 chr8:72667879+72670903 38 30 GGATTTGGACAGAACCTGGATTTTGTGGAG 1 87.5302984838 0.0716176475672 0 chr8_+_72668321_72668351|87.5302984838|0.0716176475672 0 IN ENSMUST00000161386 Novel NA Excluded E3 2 0.00358363950323269 -0.000780782996710204 -0.00849544981703045 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_79188148_79188160 ENSMUST00000145827.7 33 chr8:79186353+79189666,chr8:79186358+79189666 1,32 12 CTCAGGACAGTG 1 83.0107865243 2.61043749005 7.66478185255e-07 chr8_+_79188148_79188160|83.0107865243|2.61043749005 2.10401680189598e-07 IN ENSMUST00000145827 Novel Alt3 Excluded E2 3 -0.000830586984034603 -0.0019269107652634 0.00886455881500195 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_79188153_79188181 ENSMUST00000129613.1 0 chr8:79186353+79189666,chr8:79186358+79189666 0 28 GACAGTGGTGAGTGTCAGACTCCTCTAG 1 80.5710945896 2.50703125447 0 chr8_+_79188153_79188181|80.5710945896|2.50703125447 0 IN ENSMUST00000129613 Annotated Alt5 Excluded E3 2 -0.00211164199237342 -0.00896071565937026 0.025874171895594 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_83926258_83926276 ENSMUST00000141158.7 122 chr8:83923108+83929463,chr8:83924355+83929463 110,12 18 TAGAAGTGGAGCAGAAAG 1 75.064360379 5.71509103342 2.89105628326e-10 chr8_+_83926258_83926276|75.064360379|5.71509103342 2.48501552668756e-10 IN ENSMUST00000141158 Novel NA Excluded E2 3 0.00696250392597673 -0.00698673239650768 -0.0110424488550688 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_83926261_83926276 ENSMUST00000139575.1 681 chr8:83923108+83929463,chr8:83924355+83929463 541,140 15 AAGTGGAGCAGAAAG 1 71.9070307536 5.85447382927 1.85136739272e-08 chr8_+_83926261_83926276|71.9070307536|5.85447382927 1.79690807788901e-08 IN ENSMUST00000139575 Annotated NA Neuro-Muscular NM4 16 0.0322138346762681 -0.0271191655704316 -0.0426831001906438 TRUE TRUE FALSE FALSE FALSE FALSE chr8_+_83937915_83937933 ENSMUST00000131018.1 2014 chr8:83937777+83938349 2014 18 GAAGCTACAGGGAACCCA 1 78.5325339847 2.12754544006 3.12638803734e-11 chr8_+_83937915_83937933|78.5325339847|2.12754544006 1.82664994241577e-11 IN ENSMUST00000131018 Annotated NA Included I2 10 0.00657627951095115 -0.00108722212927653 -0.00548792924307063 TRUE TRUE FALSE FALSE FALSE FALSE chr8_+_84576282_84576294 ENSMUST00000121390.7 230 chr8:84571893+84579469 230 12 GAGCAGTACACG 1 73.7277968647 2.63525004487 1.76019811704e-06 chr8_+_84576282_84576294|73.7277968647|2.63525004487 1.6247607793618e-06 IN ENSMUST00000121390 Missing in GENCODE NA Excluded E3 2 -0.00108030766731626 -0.00516902591022711 0.00579442469579333 TRUE TRUE FALSE FALSE FALSE FALSE chr8_+_84597479_84597485 ENSMUST00000121390.7 368 chr8:84594220+84601388 368 6 AATCCG 1 71.0538066683 4.15360000134 0.00680315704386 chr8_+_84597479_84597485|71.0538066683|4.15360000134 0.00668177040235152 IN ENSMUST00000121390 Missing in GENCODE NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_+_84998382_84998391 ENSMUST00000209764.1 210 chr8:84998291+84998489 210 9 AAGGCCACT 1 70.7595009827 1.36330769469 2.75671104166e-06 chr8_+_84998382_84998391|70.7595009827|1.36330769469 2.71559089437545e-06 IN ENSMUST00000209764 Novel NA Neuronal N1 18 0.0695119915573348 0.0283851006736107 0.0302029110798968 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_84998385_84998391 ENSMUST00000209764.1 390 chr8:84998291+84998489 390 6 GCCACT 1 67.5244517305 1.60800000057 0.000179274785332 chr8_+_84998385_84998391|67.5244517305|1.60800000057 0.000178971573714271 IN ENSMUST00000209764 Missing in GENCODE NA Neuronal N1 18 0.0761468565041232 0.0291620955004387 0.0133109048984322 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr8_+_85065289_85065310 ENSMUST00000095220.3 3 chr8:85064672+85065820 3 21 GCTCTCACTGTGTTGACCAGG 1 76.2232149112 -0.224600003958 9.97424365323e-13 chr8_+_85065289_85065310|76.2232149112|-0.224600003958 7.79709630194247e-13 IN ENSMUST00000095220 Novel NA Excluded E1 6 0.00012323507791019 7.05519349554595e-05 -0.000668345470514871 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_86637972_86637997 ENSMUST00000122188.7 0 chr8:86631455+86641541,chr8:86633931+86641541 0 25 CTTCCTTGGAACAAAAGTACAACTG 1 72.4800360514 4.26303452125 6.73328059975e-12 chr8_+_86637972_86637997|72.4800360514|4.26303452125 6.46083186950364e-12 IN ENSMUST00000122188 Annotated Alt5 Excluded E4 11 -0.00304190457099188 -0.00107449894898037 -0.00883653645089849 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_86714384_86714388 ENSMUST00000034141.15 2 chr8:86714093+86716249 2 4 TGAG 1 80.4747995923 -0.0141250006855 0.0322448123085 chr8_+_86714384_86714388|80.4747995923|-0.0141250006855 0.0136422680105703 IN ENSMUST00000034141 Novel NA Excluded E1 6 -4.35105027907761e-05 -0.000131187234631577 -6.50262021831368e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr8_+_88718289_88718298 ENSMUST00000211554.1 1770 chr8:88709996+88719297 1770 9 CTTTATCAG 1 80.5774475045 1.76369228959 0.000138392409087 chr8_+_88718289_88718298|80.5774475045|1.76369228959 5.75100746864621e-05 IN ENSMUST00000211554 Annotated NA Neuronal N4 13 0.04894758712185 0.0113632145414709 0.0673171096446581 TRUE TRUE TRUE 15.5 1 14.5 1 FALSE FALSE FALSE chr8_+_94860443_94860461 ENSMUST00000212744.1 5 chr8:94860312+94861710 5 18 GTTTAATCCCCCTCACTA 1 77.0690502803 3.76504547682 7.82165443525e-11 chr8_+_94860443_94860461|77.0690502803|3.76504547682 5.58117996263263e-11 IN ENSMUST00000212744 Novel Alt3 Excluded E3 2 -0.000677827533766064 -0.00395375772185718 0.000993261369942901 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_104622092_104622103 ENSMUST00000212324.1 0 chr8:104617769-104622172,chr8:104614263-104622172 0 11 GTCACCTTGGA 1 73.5195662699 1.55313332826 0.00104563279674 chr8_-_104622092_104622103|73.5195662699|1.55313332826 0.000972986799721021 IN ENSMUST00000212324 Annotated Alt3 Excluded E3 2 -0.000451441864403389 -0.000365753403414028 -0.00292154344860419 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_105336236_105336260 ENSMUST00000014922.4 65 chr8:105334802-105336381 65 24 ACTTCACCAAACTGCTCCCGTTTG 1 87.8661398029 3.09371426 0 chr8_-_105336236_105336260|87.8661398029|3.09371426 0 IN ENSMUST00000014922 Annotated NA Neuro-Muscular NM4 16 0.0293219206657254 -0.0207943911449941 -0.0138440558588251 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_105699701_105699730 ENSMUST00000212642.1 4 chr8:105699491-105699860 4 29 GCCTAACCCTGTCCCAGCTTCTGGATGAG 1 78.0958056157 1.68093940003 0 chr8_-_105699701_105699730|78.0958056157|1.68093940003 0 IN ENSMUST00000212642 Novel Alt3 Excluded E3 2 -0.00124916934178397 0.00115910483869695 -0.000668206903032939 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_105782279_105782302 ENSMUST00000041400.5 0 chr8:105780011-105786626 0 23 GTATCGCCTTCACAGATCTCCCG 1 87.270070662 4.90770372776 9.36211108638e-11 chr8_-_105782279_105782302|87.270070662|4.90770372776 1.56552548702393e-11 IN ENSMUST00000041400 Annotated NA Included I1 1 6.49013099775632e-114 2.00483500219823e-115 8.12935761546496e-114 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_105800296_105800313 ENSMUST00000041400.5 10 chr8:105786794-105805531 10 17 GTCACCTGGAGATGGGT 1 79.536121897 0.527047619578 4.2555257096e-09 chr8_-_105800296_105800313|79.536121897|0.527047619578 2.11571204999927e-09 IN ENSMUST00000041400 Novel NA Excluded E1 6 -0.000540071376829099 -0.000875089000036149 -0.00186060943988366 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_110829518_110829547 ENSMUST00000042012.6 263 chr8:110826246-110831483 263 29 GTGGCTGGTGAAGGTGCTGATTATCACAG 1 88.8722826917 3.47490908883 0 chr8_-_110829518_110829547|88.8722826917|3.47490908883 0 IN ENSMUST00000042012 Missing in GENCODE NA Excluded E3 2 0.000634111658843598 -0.00184865630094331 0.00519783740777573 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_111192711_111192727 ENSMUST00000164283.7 0 chr8:111178866-111197592 0 16 GATGCACATTCACAAG 1 86.9011527537 4.55770001579 4.35532053622e-06 chr8_-_111192711_111192727|86.9011527537|4.55770001579 7.47399208744781e-07 IN ENSMUST00000164283 Annotated Alt3 Excluded E2 3 0.0002907569488567 -0.000650101080033143 -0.000318758918306502 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_11204535_11204552 ENSMUST00000033898.9 336 chr8:11203008-11206225 336 17 CTTTCCTTGGAAAACAG 1 82.7443093679 0.806761880538 7.26686266717e-10 chr8_-_11204535_11204552|82.7443093679|0.806761880538 2.08211670127412e-10 IN ENSMUST00000033898 Annotated NA Excluded E2 3 0.00824899527936211 -0.000572413090902823 0.0277531739197548 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_11240040_11240067 ENSMUST00000033898.9 0 chr8:11239877-11241121,chr8:11220349-11241121 0 27 GGTCAGAAAGGTGAACCTGGATTTCCG 1 83.5719146335 2.04322577148 0 chr8_-_11240040_11240067|83.5719146335|2.04322577148 0 IN ENSMUST00000033898 Annotated NA Included I1 1 -6.11337447256245e-55 1.9736582696578e-55 6.31190964409524e-55 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_11245057_11245084 ENSMUST00000033898.9 0 chr8:11244569-11245210 0 27 GGACCACCAGGGTTACCAGGAATGAAG 1 86.4562415541 2.61458061876 0 chr8_-_11245057_11245084|86.4562415541|2.61458061876 0 IN ENSMUST00000033898 Annotated NA Included I1 1 -9.58917500032025e-119 -1.79238272814554e-119 -1.88141604889879e-118 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_120171739_120171745 ENSMUST00000048786.12 0 chr8:120169809-120171887 0 6 TCCCAG 1 82.1434410142 2.22979998477 0.396163470928 chr8_-_120171739_120171745|82.1434410142|2.22979998477 0.12542452743649 RESCUED ENSMUST00000048786 Annotated Alt3 Included I2 10 -0.0126345659853304 0.0222610115121898 0.000447048496647659 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_123210215_123210235 ENSMUST00000000759.8 0 chr8:123209098-123212665 0 20 ATACCCTGTTCCAGTTGAAG 1 84.1600081041 3.01595835077 3.22233972838e-09 chr8_-_123210215_123210235|84.1600081041|3.01595835077 7.44831973875648e-10 IN ENSMUST00000000759 Annotated Alt3 Included I2 10 -0.00161564653774809 -0.000111146625648886 -0.00894631387915314 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_123245684_123245712 ENSMUST00000155853.1 2 chr8:123245210-123245943 2 28 GAGTGTGCACCGTACCCGGGAGGCCGCT 1 77.0831717052 1.82721874933 0 chr8_-_123245684_123245712|77.0831717052|1.82721874933 0 IN ENSMUST00000155853 Novel Alt3 Excluded E2 3 -0.000136392341428735 -0.000155188107471958 -0.000955162214655702 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_12649800_12649822 ENSMUST00000164774.7 1 chr8:12648787-12650153 1 22 CTCCAGCTAGAAGATGATCAGG 1 79.3698757829 3.49176921008 2.975397706e-13 chr8_-_12649800_12649822|79.3698757829|3.49176921008 1.52100554373646e-13 IN ENSMUST00000164774 Novel Alt3 Excluded E1 6 0.000576165949156264 -0.000467599500576304 0.00143978246150358 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_13485670_13485695 ENSMUST00000033828.6 0 chr8:13483736-13493845 0 25 GAGTATTTCTATCCACGATATCAAG 1 90.1433835618 1.48075864772 8.95283847058e-12 chr8_-_13485670_13485695|90.1433835618|1.48075864772 1.38933309301592e-12 IN ENSMUST00000033828 Annotated NA Included I1 1 -1.22744451259473e-77 6.95608150026527e-78 9.01443188903196e-78 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_17392641_17392671 ENSMUST00000082104.6 1 chr8:17216823-17534889 1 30 ATACCTCACTACCCAGTGCCTCAAATCAGG 1 82.5675326069 -0.290205890203 0 chr8_-_17392641_17392671|82.5675326069|-0.290205890203 0 IN ENSMUST00000082104 Novel NA Excluded E1 6 0.000421117624495811 -0.00158332861072145 -0.00176081451330572 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_22585686_22585689 ENSMUST00000009036.10 15494 chr8:22583736-22587552 15494 3 ATG 1 77.1615818661 2.42242857388 0.207442329285 chr8_-_22585686_22585689|77.1615818661|2.42242857388 0.146385066115897 RESCUED ENSMUST00000009036 Novel NA Included I1 1 2.19949123412266e-42 -2.15737782775991e-42 -4.57067101376392e-42 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_22648802_22648832 ENSMUST00000033938.6 313 chr8:22648256-22650488 313 30 GGCCATGAGCCTAAGCGATCTTGATACTGC 1 78.5838406775 0.0786176529912 0 chr8_-_22648802_22648832|78.5838406775|0.0786176529912 0 IN ENSMUST00000033938 Novel NA Neuronal N6 15 0.015151337599164 0.00511219103143929 0.0184636200439903 TRUE FALSE TRUE FALSE FALSE FALSE chr8_-_24548819_24548834 ENSMUST00000140417.8 0 chr8:24547239-24550768 0 15 ACCGTTGGAAATCAG 1 81.1603619684 1.96521057385 3.2689368954e-06 chr8_-_24548819_24548834|81.1603619684|1.96521057385 1.22650905876043e-06 IN ENSMUST00000140417 Annotated NA FALSE TRUE TRUE FALSE FALSE FALSE chr8_-_24589577_24589592 ENSMUST00000110667.7 0 chr8:24587873-24591502 0 15 GCCCATGACATACGA 1 77.0807893621 2.06015791568 3.36206884421e-06 chr8_-_24589577_24589592|77.0807893621|2.06015791568 2.39566966564464e-06 IN ENSMUST00000110667 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_-_24962859_24962885 ENSMUST00000084032.5 0 chr8:24955999-24962913,chr8:24955999-24962938 0 26 GGGGCCCAGGTGTCTCCAGACCGCCA 1 72.8127354398 -0.0253333325187 1.5285550603e-12 chr8_-_24962859_24962885|72.8127354398|-0.0253333325187 1.45461420686388e-12 IN ENSMUST00000084032 Annotated Alt5 Excluded E3 2 0.000419724198515087 1.66193913191049e-05 0.000621337841902878 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_25830374_25830392 ENSMUST00000151856.7 260 chr8:25828859-25831272,chr8:25828859-25832639 240,20 18 GTGGAGCCACTTTGGGAG 1 87.1929034627 3.3774545931 1.35912614496e-10 chr8_-_25830374_25830392|87.1929034627|3.3774545931 2.28437269100823e-11 IN ENSMUST00000151856 Missing in GENCODE NA Excluded E3 2 0.00554546362368539 -0.0220081172165624 0.0326438310559797 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_26045905_26045911 ENSMUST00000037182.13 1336 chr8:26044274-26048251 1336 6 GCTATT 1 78.9245157361 3.77649991512 0.00377608042705 chr8_-_26045905_26045911|78.9245157361|3.77649991512 0.00207529476074853 IN ENSMUST00000037182 Missing in GENCODE NA Neuronal N2 8 0.05210182316376 0.0219572617422061 -0.0866546110251504 TRUE TRUE TRUE 10.5 1 10.5 1 FALSE FALSE FALSE chr8_-_28725147_28725162 ENSMUST00000211448.1 35 chr8:28724406-28758957 35 15 GATGGAGTAGGAGAG 1 75.9519040152 1.95694736587 1.25626676284e-07 chr8_-_28725147_28725162|75.9519040152|1.95694736587 1.00720863427384e-07 IN ENSMUST00000211448 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_-_31831204_31831228 ENSMUST00000208205.1 93 chr8:31826355-31833152,chr8:31826355-31837669,chr8:31826355-31838260 36,56,1 24 AGCATCTTGGGATTGAATTTATGG 1 76.2497659521 5.90314284393 0 chr8_-_31831204_31831228|76.2497659521|5.90314284393 0 IN ENSMUST00000208205 Annotated NA Neuronal N5 14 0.0323977503681412 0.0476519436008464 -0.00975040484356218 TRUE TRUE FALSE 11.5 1 FALSE FALSE FALSE chr8_-_47196645_47196672 ENSMUST00000079195.5 4 chr8:47194104-47203120 4 27 AGACCCTATCTCCAAAAAAAGGAAAAG 1 81.4513530897 0.307709674081 0 chr8_-_47196645_47196672|81.4513530897|0.307709674081 0 IN ENSMUST00000079195 Novel NA Excluded E1 6 0.000734941570880446 -0.000119739665302775 0.00170925476111932 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_48287132_48287153 ENSMUST00000190840.7 506 chr8:48279190-48287790 506 21 AAATAAAGATTTTAGACATAG 1 79.6363529394 5.84508004189 7.61612994893e-12 chr8_-_48287132_48287153|79.6363529394|5.84508004189 3.72313291308046e-12 IN ENSMUST00000190840 Annotated NA Neuronal N1 18 0.0716267847943389 0.0171776449787778 0.0455072319917104 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr8_-_48313237_48313264 ENSMUST00000190840.7 416 chr8:48310769-48335588 416 27 CTCACTATTTGGATAAGATAGTTAAAG 1 73.447370917 4.81916133915 0 chr8_-_48313237_48313264|73.447370917|4.81916133915 0 IN ENSMUST00000190840 Annotated NA Neuronal N1 18 0.0708780800328636 0.0166734326836078 0.0538077340821879 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr8_-_54645337_54645358 ENSMUST00000175915.7 354 chr8:54643225-54648219 354 21 CTTCCCATCTGTTGTATACAG 1 81.712236919 3.48891996384 4.41335856749e-12 chr8_-_54645337_54645358|81.712236919|3.48891996384 1.50424117606462e-12 IN ENSMUST00000175915 Annotated NA Excluded E4 11 0.00338106658327729 -0.0113167102376761 0.00676028191365682 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_57304887_57304898 ENSMUST00000225995.1 20 chr8:57304432-57305254,chr8:57304432-57307078 19,1 11 CTTAACAAAAG 1 72.5093147024 0.19686666665 7.51577035607e-07 chr8_-_57304887_57304898|72.5093147024|0.19686666665 7.20681193611128e-07 IN ENSMUST00000225995 Novel NA Excluded E1 6 0.00160308437252214 0.00151934638868855 0.0107642768064484 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_57304887_57304911 ENSMUST00000225995.1 39 chr8:57304432-57305254 39 24 AACATTCAAAAAGCTTAACAAAAG 1 75.3194782475 0.239178572981 0 chr8_-_57304887_57304911|75.3194782475|0.239178572981 0 IN ENSMUST00000225995 Novel NA Neuro-Muscular NM4 16 0.0134841934853924 0.0125994027782311 0.105165117252809 TRUE TRUE FALSE FALSE FALSE FALSE chr8_-_61702169_61702193 ENSMUST00000121785.8 0 chr8:61687449-61703101 0 24 AACCCAGATCGACAGCTGAACCCG 1 78.1919279795 3.30464280117 5.55075985176e-11 chr8_-_61702169_61702193|78.1919279795|3.30464280117 3.4121927505737e-11 IN ENSMUST00000121785 Annotated NA Included I1 1 3.2846513718585e-34 1.35313977492381e-34 2.19020643204626e-33 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_67901807_67901810 ENSMUST00000212960.1 295 chr8:67883070-67904116 295 3 GTG 1 85.8095907815 2.9919999327 0.72311633477 chr8_-_67901807_67901810|85.8095907815|2.9919999327 0.136759191769539 RESCUED ENSMUST00000212960 Annotated NA Excluded E3 2 0.00404156047566688 -0.0124357683514385 0.0187984691548797 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_69612566_69612577 ENSMUST00000121886.7 2 chr8:69612455-69613393 2 11 TAGTTATATTT 1 69.0322332053 -0.0259999874979 8.59610367332e-07 chr8_-_69612566_69612577|69.0322332053|-0.0259999874979 8.55411260602956e-07 IN ENSMUST00000121886 Novel NA Excluded E1 6 9.58598114391416e-05 0.000443527076935365 -0.000274578458745933 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_69748126_69748147 ENSMUST00000130458.7 37 chr8:69744587-69749831 37 21 TCCATGGAATGTTACCCGTGT 1 69.2453665931 0.0114799958467 4.63540317241e-12 chr8_-_69748126_69748147|69.2453665931|0.0114799958467 4.60931293133626e-12 IN ENSMUST00000130458 Novel NA Excluded E1 6 0.000962943991943306 -0.00244470076698558 0.00460724328452804 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_70029207_70029235 ENSMUST00000168013.2 0 chr8:70028774-70030641 0 28 GGCATTATTCCTGCTCAGCAAGGGGATG 1 88.2765933447 3.69546869886 0 chr8_-_70029207_70029235|88.2765933447|3.69546869886 0 IN ENSMUST00000168013 Annotated Alt3 Other O1 4 0.00217198078112432 0.00288528222713396 0.00538836854086315 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_70033610_70033628 ENSMUST00000050561.12 0 chr8:70033244-70039302,chr8:70033244-70042391 0 18 TGGTTGATATCACAGCAA 1 78.5213473303 4.53959094056 8.78353564326e-08 chr8_-_70033610_70033628|78.5213473303|4.53959094056 5.14069257162575e-08 IN ENSMUST00000050561 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_70190062_70190088 ENSMUST00000063788.7 0 chr8:70189577-70191860 0 26 TGTCTTCAAAAAGATTTTCTGCCAAG 1 87.2380644008 3.96223331193 5.00266494896e-13 chr8_-_70190062_70190088|87.2380644008|3.96223331193 8.38218383591993e-14 IN ENSMUST00000063788 Annotated NA Included I1 1 -2.75677404457676e-31 -8.2337394371418e-31 2.39347702457686e-30 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_70598205_70598234 ENSMUST00000049908.10 0 chr8:70598120-70598538 0 29 GCTCGGGCGATATGGACGGGCTGCCGAAG 1 85.5448399606 1.6105454331 0 chr8_-_70598205_70598234|85.5448399606|1.6105454331 0 IN ENSMUST00000049908 Annotated Alt3 Included I2 10 -0.00295397469232326 -0.000292539595205754 -0.00107630837828605 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_70602434_70602462 ENSMUST00000211197.1 0 chr8:70602316-70602573 0 28 ATCCGTTGGGAAAAGAACATCACATTGG 1 79.2493430344 3.87615622627 0 chr8_-_70602434_70602462|79.2493430344|3.87615622627 0 IN ENSMUST00000211197 Annotated Alt3 Excluded E2 3 -0.000608507204662484 0.000496497021828661 0.00463563348301972 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_70789682_70789703 ENSMUST00000166004.2 108 chr8:70789284-70789847 108 21 CCACCTCTCTCACGGTGACAG 1 81.202242869 0.378120012134 4.77839989799e-13 chr8_-_70789682_70789703|81.202242869|0.378120012134 1.77968750847413e-13 IN ENSMUST00000166004 Annotated NA Excluded E3 2 -0.00823054670808532 -0.00607691791546186 0.00699091854711965 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_70846763_70846772 ENSMUST00000212509.2 490 chr8:70846564-70848174 490 9 GGCTCAGAA 1 81.9474328752 3.00938465962 2.37968714538e-05 chr8_-_70846763_70846772|81.9474328752|3.00938465962 7.78955750835308e-06 IN ENSMUST00000212509 Annotated NA Neuro-Muscular NM3 19 0.0479601152064978 -0.0941815396387291 -0.078496826804872 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE TRUE FALSE chr8_-_71633869_71633899 ENSMUST00000030170.14 29 chr8:71631046-71634516,chr8:71633495-71634516 21,8 30 AATTACCCCAAAGGTGCCATCTGGGCAGAG 1 73.8059998654 -0.400735296569 0 chr8_-_71633869_71633899|73.8059998654|-0.400735296569 0 IN ENSMUST00000030170 Novel NA Excluded E1 6 -5.51847773611235e-05 0.000134554347677094 0.0014066645513689 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_71636537_71636567 ENSMUST00000030170.14 0 chr8:71635226-71637771 0 30 GGCAGGGTGAAACTGCCAAGCCACTCAGAC 1 81.0568854151 2.5871765 0 chr8_-_71636537_71636567|81.0568854151|2.5871765 0 IN ENSMUST00000030170 Annotated NA Included I1 1 6.14103111232654e-06 -2.86598909751008e-05 -1.3051987414435e-05 TRUE FALSE FALSE FALSE FALSE TRUE chr8_-_71639216_71639222 ENSMUST00000030170.14 0 chr8:71637927-71639699,chr8:71637810-71639699 0 6 ATGATT 1 76.189413261 2.63440001011 0.349366330853 chr8_-_71639216_71639222|76.189413261|2.63440001011 0.274001201636031 RESCUED ENSMUST00000030170 Annotated NA Included I1 1 -1.67819641789716e-06 7.85795888877155e-06 3.65541609443295e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_71655502_71655508 ENSMUST00000030170.14 0 chr8:71655204-71655662 0 6 GCTATG 1 79.4189382394 1.42740000337 0.103522084391 chr8_-_71655502_71655508|79.4189382394|1.42740000337 0.0524860943532751 IN ENSMUST00000030170 Annotated NA Included I1 1 -1.48648266474567e-06 7.25886841761937e-06 3.08470200931653e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_71666640_71666670 ENSMUST00000176777.7 94 chr8:71666078-71671625 94 30 TCAAAAAAGCCAAGTTTGACGGTGCCCAAG 1 89.7996356258 3.79473531706 0 chr8_-_71666640_71666670|89.7996356258|3.79473531706 0 IN ENSMUST00000176777 Annotated NA Neuro-Muscular NM3 19 0.0311766542343232 -0.09387460629348 0.017634969357927 TRUE TRUE TRUE 13.5 1 12.5 1 FALSE FALSE FALSE chr8_-_71713300_71713325 ENSMUST00000093444.12 0 chr8:71712951-71713414 0 25 GGCACCATGAAACGTCATTCATCAC 1 84.7672984261 2.0804482606 3.8546943415e-13 chr8_-_71713300_71713325|84.7672984261|2.0804482606 8.21565038222616e-14 IN ENSMUST00000093444 Annotated NA Included I1 1 -1.78187495996535e-16 1.67870723098019e-14 1.01515404291667e-15 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_71714271_71714296 ENSMUST00000093444.12 0 chr8:71714034-71714699 0 25 TGATTTCCTGGAGTCTGACTCAGGG 1 83.1108104065 0.842862065496 5.64881474929e-13 chr8_-_71714271_71714296|83.1108104065|0.842862065496 1.52655665885959e-13 IN ENSMUST00000093444 Annotated NA Included I1 1 1.68484846391394e-17 -9.10907169505364e-16 -9.35179674038567e-17 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_82771338_82771358 ENSMUST00000211462.1 199 chr8:82769399-82772879 199 20 GAATGCGACAAATGTCAGAG 1 84.1625630807 4.63133334493 1.22781784739e-11 chr8_-_82771338_82771358|84.1625630807|4.63133334493 2.83706391712713e-12 IN ENSMUST00000211462 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_-_83329111_83329140 ENSMUST00000177594.7 0 chr8:83322764-83331110 0 29 AAAATTCCTTGACATATTCCAAGAATAAG 1 90.8305341665 2.5440302884 0 chr8_-_83329111_83329140|90.8305341665|2.5440302884 0 IN ENSMUST00000177594 Annotated Alt3 Included I2 10 0.00048927725533488 -0.00466140969473518 0.0116860780029191 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_83573027_83573045 ENSMUST00000212703.1 0 chr8:83572946-83573219 0 18 TCGGCATACGGTGGTGCA 1 74.2259482528 3.67200000584 3.65253072232e-09 chr8_-_83573027_83573045|74.2259482528|3.67200000584 3.29690708067432e-09 IN ENSMUST00000212703 Annotated Alt5 Excluded E1 6 -3.30331469551415e-06 -1.05311790490492e-06 -3.31092569062522e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_83890286_83890310 ENSMUST00000181723.1 0 chr8:83890016-83899180 0 24 GGCTGCAACCAAGGCTTTGCATAG 1 84.4234814367 0 3.24575921695e-11 chr8_-_83890286_83890310|84.4234814367|0 7.23721083062401e-12 IN ENSMUST00000181723 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_-_84836267_84836290 ENSMUST00000144675.7 1 chr8:84835919-84837459 1 23 CCTCCCAAGTGCTGGGATTACAG 1 83.6837121242 -0.00862963112175 0 chr8_-_84836267_84836290|83.6837121242|-0.00862963112175 0 IN ENSMUST00000144675 Novel NA Excluded E1 6 -5.0341606119852e-05 9.6659120008306e-05 -5.81933007296129e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_84893447_84893474 ENSMUST00000003907.13 0 chr8:84893164-84893554 0 27 AGAAGACACAGATCCGACCGGCCAAAT 1 84.5415627887 0.630774199362 0 chr8_-_84893447_84893474|84.5415627887|0.630774199362 0 IN ENSMUST00000003907 Annotated NA Included I1 1 -1.41602754443019e-101 -2.38667965850255e-102 -1.91453488692787e-101 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_85663407_85663431 ENSMUST00000109686.3 0 chr8:85663306-85669533 0 24 ATCCAGACTTTACTTACCTTGGAG 1 82.8649456966 2.75385715067 2.20232720949e-11 chr8_-_85663407_85663431|82.8649456966|2.75385715067 6.1881610946557e-12 IN ENSMUST00000109686 Annotated Alt3 Other O1 4 0.00478232687385151 0.00140818329267427 -0.00700095012590601 TRUE FALSE FALSE FALSE FALSE FALSE chr8_-_91276024_91276036 ENSMUST00000047783.13 642 chr8:91275736-91280717 642 12 GACCCTTAATAA 1 82.6559900408 1.74131249008 1.15600347772e-06 chr8_-_91276024_91276036|82.6559900408|1.74131249008 3.36027703884412e-07 IN ENSMUST00000047783 Missing in GENCODE NA Neuro-Muscular NM2 9 0.0571527658663062 -0.0182121965182686 0.0234725013977933 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chr8_-_93682336_93682366 ENSMUST00000212304.1 0 chr8:93658403-93685478 0 30 GTCCTCGGTGATAGGACAAGAGTCATCTTT 1 79.7550902989 -0.237117653165 0 chr8_-_93682336_93682366|79.7550902989|-0.237117653165 0 IN ENSMUST00000212304 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr8_-_95100646_95100673 ENSMUST00000169353.2 0 chr8:95100452-95101408 0 27 CCTGACAGCTGGGGCTGCAGTCTCCAG 1 87.1205009494 1.96245161312 0 chr8_-_95100646_95100673|87.1205009494|1.96245161312 0 IN ENSMUST00000169353 Annotated NA Included I1 1 -4.07899727460448e-35 -2.31181923019178e-34 5.39268292631258e-34 TRUE TRUE TRUE FALSE FALSE FALSE chr9_+_103346140_103346167 ENSMUST00000035164.9 10 chr9:103345879+103346683 10 27 GGTAGAGCATCAGGAGTCCTAAGCCAG 1 82.4835981722 0.328806451011 0 chr9_+_103346140_103346167|82.4835981722|0.328806451011 0 IN ENSMUST00000035164 Novel NA Excluded E1 6 0.00010189928455019 0.000505651972458644 -0.000716764099221125 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_106460275_106460299 ENSMUST00000185874.6 0 chr9:106460149+106460396 0 24 GAAGTGGGCAGCATCATTGGGAAG 1 89.2065012554 5.07242858889 7.78044295657e-13 chr9_+_106460275_106460299|89.2065012554|5.07242858889 1.20681242776755e-13 IN ENSMUST00000185874 Annotated NA Included I1 1 -4.94225974873616e-89 5.58249585591401e-89 1.42462087265911e-88 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_106461264_106461279 ENSMUST00000214252.1 1 chr9:106461124+106461848 1 15 ACTACAGGAGCCCAG 1 81.7394784941 4.35142109739 2.564775059e-09 chr9_+_106461264_106461279|81.7394784941|4.35142109739 8.70071570346909e-10 IN ENSMUST00000214252 Novel Alt3 Excluded E2 3 -0.00120946578403381 -0.000830500515705707 -0.00250736876291934 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_107346145_107346171 ENSMUST00000042581.3 0 chr9:107342589+107346817 0 26 GTTTTATACATCAGGAAGAAGAAGAG 1 88.5031230964 3.05093335907 9.32143251475e-13 chr9_+_107346145_107346171|88.5031230964|3.05093335907 1.46771483855446e-13 IN ENSMUST00000042581 Annotated NA Included I1 1 -2.08482699951336e-11 3.97111085650173e-11 5.17396072277028e-11 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_108796654_108796670 ENSMUST00000192307.5 1 chr9:108796396+108797206 1 16 GTGTCTCTTGCTCAAG 1 87.1581350646 0.878949999623 7.18500814401e-10 chr9_+_108796654_108796670|87.1581350646|0.878949999623 1.21048504553301e-10 IN ENSMUST00000192307 Novel Alt3 Excluded E1 6 -3.0979885276894e-05 -0.00105880234878206 -0.000265144590746942 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_108838759_108838774 ENSMUST00000024238.10 258 chr9:108838565+108839999 258 15 GATTGCGGGGTACAG 1 83.6470792837 3.01731581751 5.14774001203e-09 chr9_+_108838759_108838774|83.6470792837|3.01731581751 1.2811642857713e-09 IN ENSMUST00000024238 Annotated NA Muscular M2 20 0.0111065530640419 -0.0503233596850165 0.120354760990727 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_108838759_108838781 ENSMUST00000024238.10 28 chr9:108838565+108839999 28 22 GATTGCGGGGTACAGGTAAGGG 1 78.0071064948 2.95250002467 3.12638803734e-13 chr9_+_108838759_108838781|78.0071064948|2.95250002467 1.97397653778353e-13 IN ENSMUST00000024238 Novel NA Excluded E4 11 0.00380591691550228 -0.0234721057860088 0.104552743454375 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_108962984_108963011 ENSMUST00000112070.7 0 chr9:108962900+108963102 0 27 GGCCAGAAGGGGGAGCCTGGAGTAACG 1 81.7425513713 2.31725810132 0 chr9_+_108962984_108963011|81.7425513713|2.31725810132 0 IN ENSMUST00000112070 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_+_108965049_108965076 ENSMUST00000112070.7 0 chr9:108964664+108965157 0 27 GGTGACAAAGGTGATCGTGGGGAACGG 1 88.0031763193 2.81483866178 0 chr9_+_108965049_108965076|88.0031763193|2.81483866178 0 IN ENSMUST00000112070 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_+_108968876_108968903 ENSMUST00000112070.7 0 chr9:108968639+108969100 0 27 GGTCCCCCAGGTCCCCCTGGACGGCTG 1 88.5221473142 1.63696773567 0 chr9_+_108968876_108968903|88.5221473142|1.63696773567 0 IN ENSMUST00000112070 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_+_110545299_110545315 ENSMUST00000153838.7 0 chr9:110532752+110547208 0 16 AGAAGAAGAAAATGAG 1 74.4069717992 3.38079995513 3.36113752353e-06 chr9_+_110545299_110545315|74.4069717992|3.38079995513 3.00580194134703e-06 IN ENSMUST00000153838 Annotated NA Included I1 1 -3.586529368287e-49 4.04980748419937e-49 9.2550845059628e-49 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_110546663_110546678 MmuEX0041818 0 chr9:110545315+110547208,chr9:110532752+110547208 0 15 ACATATCACAAACAG 1 68.2712644921 -1.65305263324 1.7452969826e-06 chr9_+_110546663_110546678|68.2712644921|-1.65305263324 1.74025627797114e-06 IN MmuEX0041818 Missing in GENCODE NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_+_110766478_110766506 ENSMUST00000200011.4 0 chr9:110766214+110766620,chr9:110765931+110766620,chr9:110763900+110766620 0 28 ATCGAGTTCACACCTGAACAGATTGAAG 1 85.8955968189 2.87896869826 0 chr9_+_110766478_110766506|85.8955968189|2.87896869826 0 IN ENSMUST00000200011 Annotated NA Included I1 1 -3.57771045317031e-08 8.12747855909989e-09 -1.65350592391587e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_111344829_111344856 ENSMUST00000078626.7 76 chr9:111343245+111345394 76 27 GTATTGGAATGTCTGACCCTGGAGGAG 1 73.3704799313 0.176774193803 0 chr9_+_111344829_111344856|73.3704799313|0.176774193803 0 IN ENSMUST00000078626 Annotated NA Excluded E4 11 0.004397452414195 0.00772535572856412 -0.0209011647245938 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_111374904_111374925 ENSMUST00000078626.7 14 chr9:111373545+111377777 14 21 GCTCTCCTGAAAGAGAAAGGG 1 72.8012035183 1.11239999264 3.73656661168e-12 chr9_+_111374904_111374925|72.8012035183|1.11239999264 3.55693252629408e-12 IN ENSMUST00000078626 Novel Alt5 Excluded E3 2 -0.000580929669617918 -0.00630465389075084 0.00399006011896838 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_113841158_113841175 ENSMUST00000213663.1 127 chr9:113835254+113841558 127 17 AGACACAATGTAGCCAG 1 86.6214173401 0.0139047599265 1.42858880281e-09 chr9_+_113841158_113841175|86.6214173401|0.0139047599265 2.50611864593964e-10 IN ENSMUST00000213663 Annotated NA Excluded E1 6 0.000273874937450147 -0.000724749444989152 6.16982866196268e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_113858580_113858604 ENSMUST00000111838.9 0 chr9:113844140+113908719,chr9:113854346+113860119 0 24 AGGATACTTCTGACAAGATGGATG 1 81.1012177122 4.92278567808 2.04103400847e-11 chr9_+_113858580_113858604|81.1012177122|4.92278567808 7.73769937012503e-12 IN ENSMUST00000111838 Annotated NA Included I1 1 7.63514605752142e-06 -3.53182514839464e-05 -1.77747470753444e-05 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr9_+_113860119_113860137 ENSMUST00000111838.9 0 chr9:113844140+113908719,chr9:113858604+113862185 0 18 GAACAGCATCTGATGATG 1 86.2547781947 2.98354543915 5.17902649655e-08 chr9_+_113860119_113860137|86.2547781947|2.98354543915 9.37992217231454e-09 IN ENSMUST00000111838 Annotated NA Included I1 1 2.08048431212223e-06 -1.00435540175272e-05 -4.64628589117005e-06 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr9_+_113862435_113862462 ENSMUST00000111838.9 194 chr9:113862287+113868547 194 27 GTTCATCATCACCTGACAAAAATGAAG 1 80.1875373557 3.10632255145 0 chr9_+_113862435_113862462|80.1875373557|3.10632255145 0 IN ENSMUST00000111838 Annotated NA Neuronal N4 13 0.0305775180059808 0.00441032700305398 0.00822091438724385 TRUE TRUE TRUE 13.5 1 TRUE FALSE FALSE chr9_+_113865085_113865112 ENSMUST00000111838.9 109 chr9:113862287+113868547 109 27 GATCACAATCTGCTAATACCATTGGTG 1 83.4126774418 4.53374189331 0 chr9_+_113865085_113865112|83.4126774418|4.53374189331 0 IN ENSMUST00000111838 Annotated NA Neuronal N4 13 0.0382574463360555 0.0199374339366377 -0.0100789680984578 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr9_+_113878749_113878773 ENSMUST00000111838.9 0 chr9:113876350+113879941,chr9:113844140+113908719 0 24 CTCTTAGGAGACATACGGACTAAG 1 76.1419045065 4.49789295133 1.26583188376e-11 chr9_+_113878749_113878773|76.1419045065|4.49789295133 9.97268934099793e-12 IN ENSMUST00000111838 Annotated NA Included I1 1 1.51057856224986e-06 -8.09555136441766e-06 -3.94120637532781e-06 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chr9_+_113887044_113887047 ENSMUST00000111838.9 2013 chr9:113881751+113889957 2013 3 AGA 1 71.1607013659 6.18514285769 0.393737681974 chr9_+_113887044_113887047|71.1607013659|6.18514285769 0.386246297848951 RESCUED ENSMUST00000111838 Annotated NA Non-Neuronal NN1 23 -0.0430476743033209 -0.0334918739972187 0.0330275971839941 TRUE TRUE TRUE 11.5 -1 10.5 -1 TRUE FALSE FALSE chr9_+_118543758_118543779 ENSMUST00000084820.5 23 chr9:118539024+118548034,chr9:118539024+118548622 1,22 21 CCTTGTATGAACAGGACTGGG 1 76.303316881 4.05368000031 7.98028310101e-12 chr9_+_118543758_118543779|76.303316881|4.05368000031 6.18971540689017e-12 IN ENSMUST00000084820 Novel NA Excluded E1 6 0.000730154859004496 -0.000355758673828498 0.00320736924475993 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_118566958_118566979 ENSMUST00000084820.5 0 chr9:118565667+118567180 0 21 GTAACAATTTTGGAGCTACAG 1 90.3171910256 1.86147999763 3.3833202906e-10 chr9_+_118566958_118566979|90.3171910256|1.86147999763 5.26528820543604e-11 IN ENSMUST00000084820 Annotated Alt5 Included I1 1 0.00149258004809934 0.00429273205277437 0.00566317616435023 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_121729996_121730024 ENSMUST00000183070.7 0 chr9:121729680+121731477 0 28 AGAATGTGGTCTTTTGCAAAATGAAAAG 1 88.9259026741 5.68353123963 0 chr9_+_121729996_121730024|88.9259026741|5.68353123963 0 IN ENSMUST00000183070 Annotated NA Other O1 4 -0.0013656625331324 0.0114634572031055 0.00972391130806036 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_121738387_121738415 ENSMUST00000182763.7 0 chr9:121731565+121741121,chr9:121731565+121741597 0 28 AAACAGTGTTACACCGTGCGCTCCAAAG 1 77.9016964458 4.71981253102 0 chr9_+_121738387_121738415|77.9016964458|4.71981253102 0 IN ENSMUST00000182763 Annotated Alt3 Excluded E4 11 0.00355742793174758 -0.00232517906529096 0.0389722363752474 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_121741121_121741151 ENSMUST00000183070.7 0 chr9:121738415+121741597,chr9:121731565+121741597,chr9:121740075+121741597 0 30 AACTACAAAGCCTGCTCCACACCTGGATGG 1 83.5323815493 3.36158824109 0 chr9_+_121741121_121741151|83.5323815493|3.36158824109 0 IN ENSMUST00000183070 Annotated Alt5 Included I2 10 -0.00744413485832561 -0.0020082530027825 -0.0161199543340392 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_123117915_123117941 ENSMUST00000026891.4 1 chr9:123113322+123118890 1 26 ATGGGGAACTAAATGAAGACTTGATG 1 75.4731566387 -0.0743333281289 0 chr9_+_123117915_123117941|75.4731566387|-0.0743333281289 0 IN ENSMUST00000026891 Novel NA Excluded E1 6 9.42719975056849e-05 -0.000367530453870561 7.81211856461796e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_15315101_15315131 ENSMUST00000213763.1 0 chr9:15314264+15315382 0 30 GGTGACACGAGTGAACCCTACCCTAAAATG 1 85.6326068603 -0.420117648031 0 chr9_+_15315101_15315131|85.6326068603|-0.420117648031 0 IN ENSMUST00000213763 Annotated Alt5_3 Excluded E4 11 -0.000874301414268201 -9.81107197192948e-05 -0.00255317791371523 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_21006826_21006856 ENSMUST00000214124.1 0 chr9:21006185+21007327 0 30 AGCTATGCTAACACCAAGACCAGGGCTGAG 1 85.1404976466 3.63661767455 0 chr9_+_21006826_21006856|85.1404976466|3.63661767455 0 IN ENSMUST00000214124 Annotated Alt3 Excluded E3 2 0.000665022275315844 0.000522932090151304 -0.000665524759553701 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_21487046_21487076 ENSMUST00000165766.8 124 chr9:21485721+21489742 124 30 CTGTTTCTATACTGAGGAGCTGGTCACAGG 1 76.758931361 2.33405886503 0 chr9_+_21487046_21487076|76.758931361|2.33405886503 0 IN ENSMUST00000165766 Annotated NA Excluded E3 2 0.0087802162165839 -0.0257781183342958 0.0182283257391369 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_21490657_21490669 ENSMUST00000091087.12 481 chr9:21489794+21494503 481 12 GGGGAGATCTTG 1 81.1881559708 3.96356251661 1.09267361381e-06 chr9_+_21490657_21490669|81.1881559708|3.96356251661 4.07982928218864e-07 IN ENSMUST00000091087 Annotated NA Neuronal N5 14 0.00904140054772816 0.0574429792377098 -0.00196283406033758 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_21539086_21539114 ENSMUST00000086361.11 0 chr9:21529083+21539841,chr9:21535997+21539841 0 28 CTAAAGCCAAAAACTTACAGAAGCAGAG 1 85.8518514759 0.680718751915 0 chr9_+_21539086_21539114|85.8518514759|0.680718751915 0 IN ENSMUST00000086361 Annotated NA Included I1 1 -4.80704302950292e-07 -1.53874966194054e-06 -1.08006174789112e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_22648019_22648034 ENSMUST00000039798.15 1167 chr9:22646068+22655224 1167 15 ATCGAAATCCTGATG 1 78.4345471786 2.10557892605 3.32402118053e-08 chr9_+_22648019_22648034|78.4345471786|2.10557892605 1.97118508182825e-08 IN ENSMUST00000039798 Annotated NA Neuronal N1 18 0.0677398848140216 0.0353414853550613 0.00620451062924172 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr9_+_22659049_22659078 ENSMUST00000136084.7 0 chr9:22655365+22888097 0 29 ACTTTGCCAACCCATCAGATGACGACCAA 1 79.1076108852 2.03681819547 0 chr9_+_22659049_22659078|79.1076108852|2.03681819547 0 IN ENSMUST00000136084 Annotated Alt3 Excluded E2 3 0.000209950542454501 -0.00551305635033877 -0.000538265577114347 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_25264202_25264207 ENSMUST00000165594.3 0 chr9:25252699+25265393,chr9:25252699+25265301 0 5 TAGCT 1 72.6826387923 4.19611105654 0.999995243327 chr9_+_25264202_25264207|72.6826387923|4.19611105654 0.954864047606005 RESCUED ENSMUST00000165594 Annotated Alt5 Included I1 1 -0.000689584441211945 -0.000194473399277419 -0.000379906049065869 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_27006923_27006951 ENSMUST00000213770.1 2 chr9:27006447+27007157 2 28 AGACTTTCCGTTCAGCCTCTGACTCAAG 1 82.110122738 2.68740621535 0 chr9_+_27006923_27006951|82.110122738|2.68740621535 0 IN ENSMUST00000213770 Novel Alt5 Excluded E2 3 2.86212383476431e-05 -0.000291875467131909 0.001029434755518 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_28904270_28904297 ENSMUST00000115243.8 127 chr9:28903366+28920086 127 27 AAATAAGCCCCTCATCAGCAGTGGCAG 1 78.9691933003 2.87167742368 0 chr9_+_28904270_28904297|78.9691933003|2.87167742368 0 IN ENSMUST00000115243 Novel NA Excluded E3 2 0.00978621549484316 -0.016513826109123 -0.0362186115586033 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_31343254_31343266 ENSMUST00000215499.1 203 chr9:31341484+31346792 203 12 CTGGAGCTGCAG 1 81.2796517553 3.75625013001 1.23213900727e-06 chr9_+_31343254_31343266|81.2796517553|3.75625013001 4.52754331581318e-07 IN ENSMUST00000215499 Missing in GENCODE NA Neuronal N3 17 0.0492719101572405 0.00579361390410188 0.0245974550898509 TRUE TRUE TRUE 12.5 1 FALSE FALSE FALSE chr9_+_35475729_35475743 ENSMUST00000119129.9 154 chr9:35473565+35476876 154 14 TGGAAAACAATATA 1 78.5854634329 1.53916666523 4.79194557368e-08 chr9_+_35475729_35475743|78.5854634329|1.53916666523 2.77718765762103e-08 IN ENSMUST00000119129 Missing in GENCODE NA Neuronal N4 13 0.0359845709988733 0.0121039554928459 0.0837798825621407 TRUE TRUE FALSE FALSE FALSE FALSE chr9_+_36835294_36835299 ENSMUST00000034630.14 1 chr9:36832911+36843661 1 5 GGGTT 1 75.5343379709 -0.13100000057 0.0401456660302 chr9_+_36835294_36835299|75.5343379709|-0.13100000057 0.0333396631721687 IN ENSMUST00000034630 Novel NA Excluded E1 6 -0.000410225763401675 0.000971612462992933 0.00139840217774947 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_36871975_36871990 ENSMUST00000034630.14 10 chr9:36870556+36876296 10 15 CCTCTAGGGTTACAG 1 80.2342519959 0.0746315764753 2.08128765333e-08 chr9_+_36871975_36871990|80.2342519959|0.0746315764753 9.18246578773818e-09 IN ENSMUST00000034630 Novel NA Excluded E1 6 -7.7026730282065e-07 2.93167875565337e-05 -1.79419874430989e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_44327648_44327672 ENSMUST00000215050.1 13 chr9:44327205+44327952 13 24 TGTAAGGCATTCCCCCACCATGAA 1 72.0073999028 3.74453578637 0 chr9_+_44327648_44327672|72.0073999028|3.74453578637 0 IN ENSMUST00000215050 Novel Alt5 Excluded E2 3 0.000955324841414038 -0.000454119769922859 0.00287467654784281 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_45854626_45854655 ENSMUST00000159499.1 0 chr9:45852976+45856087 0 29 GTCCAGCACATATCGAGACCTCCGAAAGG 1 84.532447737 3.04051512209 0 chr9_+_45854626_45854655|84.532447737|3.04051512209 0 IN ENSMUST00000159499 Annotated Alt3 Excluded E2 3 -0.00158535295175452 0.00197251768279317 0.00479551029928617 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_47829394_47829409 ENSMUST00000114547.7 1 chr9:47818817+47848166 1 15 AACCAGCAGTTCACG 1 67.2316306935 4.5541052536 1.0670191275e-07 chr9_+_47829394_47829409|67.2316306935|4.5541052536 1.06556355738974e-07 IN ENSMUST00000114547 Novel Alt5 Excluded E2 3 0.00169252850930497 0.00360581065228987 -0.00573740374783044 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_47836743_47836770 ENSMUST00000114548.7 6 chr9:47829409+47848166 6 27 AAGAACTGGACAGTGAGGATCTCTCAG 1 80.7761832537 3.50896780145 0 chr9_+_47836743_47836770|80.7761832537|3.50896780145 0 IN ENSMUST00000114548 Novel Alt5 Excluded E2 3 0.000809432770547312 0.000801528119166742 0.00594177124844643 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_47840316_47840321 ENSMUST00000114548.7 2 chr9:47829409+47848166 2 5 GCCTG 1 59.8083532751 0.243000000198 0.0690205553601 chr9_+_47840316_47840321|59.8083532751|0.243000000198 0.0690203993340845 IN ENSMUST00000114548 Novel NA Excluded E2 3 0.00599118196722672 -0.00673841550735902 -0.00163025199954313 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_50576693_50576705 ENSMUST00000213916.1 0 chr9:50575348+50577536,chr9:50575348+50577760 0 12 CTGAAGAAAATG 1 79.5116769855 1.54431247443 0.000129452881697 chr9_+_50576693_50576705|79.5116769855|1.54431247443 6.46242578354883e-05 IN ENSMUST00000213916 Annotated NA Included I1 1 2.33444408129391e-19 -9.19746765568795e-18 4.77090505226729e-19 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_50867780_50867797 ENSMUST00000175645.7 1 chr9:50867396+50870062 1 17 CTCAGTTAAAGGACGAG 1 83.6321982712 5.21133339121 6.01403371547e-10 chr9_+_50867780_50867797|83.6321982712|5.21133339121 1.50008672150648e-10 IN ENSMUST00000175645 Novel Alt5 Excluded E3 2 -0.00138539362017047 0.000633611168743032 -0.00462648287162681 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_54320430_54320448 ENSMUST00000056740.5 0 chr9:54312943+54320787 0 18 GACCACCGGGCCCACCAG 1 91.5245210601 2.3594090566 1.13825074477e-07 chr9_+_54320430_54320448|91.5245210601|2.3594090566 1.84881453479946e-08 IN ENSMUST00000056740 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_+_54901948_54901957 ENSMUST00000034843.8 16 chr9:54900572+54903890 16 9 ATTCTACAT 1 65.487513881 0.253230767754 4.92471254331e-05 chr9_+_54901948_54901957|65.487513881|0.253230767754 4.92295361917972e-05 IN ENSMUST00000034843 Novel NA Excluded E1 6 0.000337452720336922 0.000323779382082856 0.000445017841346358 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_54952081_54952108 ENSMUST00000034848.13 0 chr9:54950903+54952340,chr9:54950903+54952678,chr9:54951428+54952340 0 27 GAATCAACATAAAGTTCAGAAACCATG 1 90.1860931034 1.39403224256 0 chr9_+_54952081_54952108|90.1860931034|1.39403224256 0 IN ENSMUST00000034848 Annotated Alt3 Other O1 4 -0.00417462908495248 -0.0559496421166296 0.00611756637910246 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_55218314_55218332 ENSMUST00000140375.7 61 chr9:55214998+55218433 61 18 TGACTCCAATGGGATCAG 1 80.1887803173 3.17309093882 1.94006588572e-10 chr9_+_55218314_55218332|80.1887803173|3.17309093882 8.6272100574547e-11 IN ENSMUST00000140375 Novel Alt3 Excluded E3 2 -0.000297408681313336 -0.000651410084580169 -0.00195109090261904 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_57139687_57139708 ENSMUST00000160426.7 0 chr9:57139401+57139869 0 21 CCTGTGTTTGTGATGCAGGAG 1 83.5886946151 1.45467999607 1.00726538221e-10 chr9_+_57139687_57139708|83.5886946151|1.45467999607 2.5288215965702e-11 IN ENSMUST00000160426 Annotated Alt5 Excluded E2 3 -0.000653726166426422 0.00194053295863299 -0.00461036046450355 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_58140858_58140882 ENSMUST00000136154.7 0 chr9:58140553+58141055 0 24 ATGGAGAGATGGAGACATCAAGAG 1 85.9730402319 0.863892851614 1.68398628375e-12 chr9_+_58140858_58140882|85.9730402319|0.863892851614 3.13304937549219e-13 IN ENSMUST00000136154 Annotated NA Included I1 1 4.34605235212312e-09 -4.83002985903199e-08 -1.89350147718766e-08 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_58650496_58650518 ENSMUST00000177292.7 0 chr9:58643684+58651257,chr9:58643802+58651058,chr9:58643802+58651257 0 22 ATGATGAACCAGCTGGGCCAAT 1 75.2750078436 5.0046923705 4.10977918364e-10 chr9_+_58650496_58650518|75.2750078436|5.0046923705 3.48078454948109e-10 IN ENSMUST00000177292 Annotated Alt5 Included I2 10 -0.00168698121855261 0.00428576358754542 -0.00456545069871661 TRUE TRUE TRUE 13.5 -1 14.5 -1 FALSE TRUE FALSE chr9_+_58650508_58650518 ENSMUST00000176557.7 0 chr9:58643684+58651257,chr9:58643802+58651058,chr9:58643802+58651257 0 10 CTGGGCCAAT 1 71.7886731879 4.97507146852 0.00688269138098 chr9_+_58650508_58650518|71.7886731879|4.97507146852 0.00669346208881738 IN ENSMUST00000176557 Annotated Alt5 Neuro-Muscular NM1 12 0.0599348666789376 -0.059534511594939 0.00885469712061178 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_61403451_61403468 ENSMUST00000162962.7 961 chr9:61402057+61407353 961 17 AGAGAGAGTCCAGCACG 1 84.895910425 2.35785705277 1.19939613796e-09 chr9_+_61403451_61403468|84.895910425|2.35785705277 2.51619503011113e-10 IN ENSMUST00000162962 Annotated NA Included I1 1 -2.8524513690588e-05 -0.00199654349538183 0.00244047793493204 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_61403453_61403468 ENSMUST00000162962.7 43 chr9:61402057+61407353 43 15 AGAGAGTCCAGCACG 1 79.304723879 2.18157886988 1.9197613943e-08 chr9_+_61403453_61403468|79.304723879|2.18157886988 9.91929360871779e-09 IN ENSMUST00000162962 Novel NA Included I3 5 -0.0112939512526612 -0.000485023027426885 0.0459307417721815 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_62858259_62858272 ENSMUST00000213643.1 1 chr9:62858161+62871265 1 13 GACCAAATTAATG 1 82.639002899 3.40917646008 7.61763368273e-07 chr9_+_62858259_62858272|82.639002899|3.40917646008 2.22046808273646e-07 IN ENSMUST00000213643 Novel Alt5 Excluded E1 6 -0.000286002453440811 0.000868481598898944 -0.00149522062038446 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_64911886_64911913 ENSMUST00000038890.5 0 chr9:64911782+64912353 0 27 GTCAGAACCGCACTCTTCTGTTTGAGA 1 87.0781712016 3.92212899462 0 chr9_+_64911886_64911913|87.0781712016|3.92212899462 0 IN ENSMUST00000038890 Annotated NA Included I1 1 3.95842417263562e-20 -1.55951463383619e-17 -1.15431098142942e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_66035049_66035073 ENSMUST00000205379.1 318 chr9:66032345+66039576 318 24 CTGCCTGAAAATGCTCAACCTGTG 1 79.331620187 6.38246421729 0 chr9_+_66035049_66035073|79.331620187|6.38246421729 0 IN ENSMUST00000205379 Annotated NA Neuronal N4 13 0.0280619006520969 0.00800026785616715 0.0336356154312461 TRUE TRUE FALSE 15.5 1 FALSE FALSE FALSE chr9_+_66251074_66251101 ENSMUST00000034944.8 0 chr9:66250385+66254470 0 27 GAGCATTGGAGTCATCACCTATATCCT 1 82.5909417171 4.93803229688 0 chr9_+_66251074_66251101|82.5909417171|4.93803229688 0 IN ENSMUST00000034944 Annotated NA Included I1 1 -1.9169099844443e-13 -3.97192480360273e-14 -4.84673368768414e-13 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_66717559_66717580 ENSMUST00000071889.12 0 chr9:66713933+66746469 0 21 GATCCAAGTGGACCTATGTTG 1 89.2337083038 1.72668001071 7.39214556233e-09 chr9_+_66717559_66717580|89.2337083038|1.72668001071 1.14588061261856e-09 IN ENSMUST00000071889 Annotated NA Included I1 1 -9.79074702227696e-08 -1.62846335534216e-06 1.98216815431034e-07 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_66762402_66762432 ENSMUST00000085420.11 38 chr9:66753821+66763246 38 30 GACTGCTTACCAACACAGGACTGAGTTTGG 1 76.9206544759 1.12247058673 0 chr9_+_66762402_66762432|76.9206544759|1.12247058673 0 IN ENSMUST00000085420 Annotated NA Neuronal N5 14 0.025731206202076 0.125055984429193 -0.0517268774424018 TRUE TRUE TRUE FALSE FALSE FALSE chr9_+_67854156_67854182 ENSMUST00000077879.6 66 chr9:67853738+67858789 66 26 CAGTGTGGTATGGACTATGTGCCTTG 1 79.505047857 0.687499999038 0 chr9_+_67854156_67854182|79.505047857|0.687499999038 0 IN ENSMUST00000077879 Novel NA Excluded E1 6 0.00295236386922045 0.00113063155118969 -0.00118888221706773 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_69196074_69196104 ENSMUST00000034766.13 0 chr9:68653972+69197507,chr9:68653972+69348131,chr9:69195648+69197507 0 30 GTATCTCAGTCACGAAGAAGACACACACAT 1 90.5336389776 3.39823528324 0 chr9_+_69196074_69196104|90.5336389776|3.39823528324 0 IN ENSMUST00000034766 Annotated NA Included I1 1 -3.28463724999053e-12 2.18619089863723e-11 4.7508507860734e-12 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_70572148_70572176 ENSMUST00000216816.1 0 chr9:70562861+70573510,chr9:70562861+70573456,chr9:70559101+70573456 0 28 GATGGTGAGGAAGAAGAAAATGAGAAAG 1 86.8185303339 4.16071876511 0 chr9_+_70572148_70572176|86.8185303339|4.16071876511 0 IN ENSMUST00000216816 Annotated NA Included I1 1 2.02626913301936e-95 4.84417452810696e-96 3.07896081424783e-95 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_7206072_7206081 ENSMUST00000215683.1 54 chr9:7205400+7206719 54 9 GTTTCAGAG 1 80.3323078555 0.457999993975 1.94607273017e-05 chr9_+_7206072_7206081|80.3323078555|0.457999993975 8.44073888506269e-06 IN ENSMUST00000215683 Missing in GENCODE NA Excluded E1 6 -0.000398539353713736 0.00014336625447718 -0.000783869665380082 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_72309394_72309406 ENSMUST00000184036.7 1 chr9:72308068+72312077 1 12 CTTTCTACTACA 1 79.5231398536 -0.371937490068 9.29692328011e-07 chr9_+_72309394_72309406|79.5231398536|-0.371937490068 4.63221309976447e-07 IN ENSMUST00000184036 Novel Alt5 Excluded E1 6 0.000220082189477368 -9.03165212182655e-05 -0.000110381077925096 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_73007392_73007419 ENSMUST00000149692.1 116 chr9:73005892+73010296 116 27 GTAAAAATGAAGGAAACAAGGGAAAAG 1 76.6554548078 1.34183868477 0 chr9_+_73007392_73007419|76.6554548078|1.34183868477 0 IN ENSMUST00000149692 Novel NA Excluded E3 2 -0.0023357981892941 -0.0487819105291262 -0.00266036884850766 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_75187521_75187530 ENSMUST00000136604.7 3431 chr9:75186122+75189899 3431 9 GATGACAAG 1 84.705150346 2.73715383273 5.60863982507e-05 chr9_+_75187521_75187530|84.705150346|2.73715383273 1.20525385887138e-05 IN ENSMUST00000136604 Annotated NA Neuronal N1 18 0.0741499885556607 0.0215979301143318 0.0189958765939004 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chr9_+_78634646_78634675 ENSMUST00000093812.4 0 chr9:78617049+78636448 0 29 GCCATTTCAAGACTCTCGTTCTTCCGGCA 1 81.6967689524 1.54315152141 0 chr9_+_78634646_78634675|81.6967689524|1.54315152141 0 IN ENSMUST00000093812 Annotated NA Included I1 1 -4.13918990222709e-17 -8.77665884675946e-17 1.40186826712727e-17 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_80098885_80098906 ENSMUST00000164859.7 346 chr9:80067572+80103693,chr9:80093641+80103693 1,345 21 CAATCAGGACCGAAAAGAAAG 1 83.8247882658 3.06668000937 8.90576501433e-12 chr9_+_80098885_80098906|83.8247882658|3.06668000937 2.15927276059347e-12 IN ENSMUST00000164859 Annotated NA Neuro-Muscular NM3 19 0.0361883715378495 0.00540715627225134 0.0438811084959151 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr9_+_80098892_80098906 ENSMUST00000037484.14 71 chr9:80093641+80103693 71 14 GACCGAAAAGAAAG 1 82.5631477146 3.19466666463 1.46013906743e-07 chr9_+_80098892_80098906|82.5631477146|3.19466666463 4.30956954566852e-08 IN ENSMUST00000037484 Missing in GENCODE NA Neuronal N4 13 0.034636745167297 0.00811397024078377 0.0551976457694472 TRUE TRUE FALSE FALSE FALSE FALSE chr9_+_80253542_80253551 ENSMUST00000035889.14 128 chr9:80251847+80254879 128 9 GAGGACGAG 1 83.2610706533 3.9363077879 4.49855940973e-05 chr9_+_80253542_80253551|83.2610706533|3.9363077879 1.18726685983672e-05 IN ENSMUST00000035889 Missing in GENCODE NA Excluded E2 3 0.00519040115725411 0.00811597335829615 -0.0302367266617699 TRUE TRUE FALSE FALSE FALSE FALSE chr9_+_80293526_80293553 ENSMUST00000035889.14 1 chr9:80292517+80299145 1 27 CTTGAGTTCCTGTCCAGCAACTTCTAA 1 81.3116234898 1.21151612074 0 chr9_+_80293526_80293553|81.3116234898|1.21151612074 0 IN ENSMUST00000035889 Annotated NA Excluded E3 2 -0.0108920029439767 0.0101324421050802 0.0224974828987953 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_80293944_80293974 ENSMUST00000076140.3 10 chr9:80292517+80296642 10 30 AACTAATGGAACAAGACCCCAAATGACACC 1 79.5506576424 1.75264706331 0 chr9_+_80293944_80293974|79.5506576424|1.75264706331 0 IN ENSMUST00000076140 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_+_80303272_80303299 ENSMUST00000113266.7 289 chr9:80300666+80306959 289 27 ATTTTGCACCATTTTTGAACAATTCAC 1 84.0677182053 3.75680642743 0 chr9_+_80303272_80303299|84.0677182053|3.75680642743 0 IN ENSMUST00000113266 Annotated NA Neuronal N4 13 0.0457594588159668 0.00655764363465334 0.077940895502927 TRUE TRUE TRUE FALSE FALSE FALSE chr9_+_81639160_81639183 ENSMUST00000183536.7 271 chr9:81632279+81642546,chr9:81636937+81642546 78,193 23 GGCCAAGTAACTCACTAAAGCAG 1 85.5320996042 0.133629634631 0 chr9_+_81639160_81639183|85.5320996042|0.133629634631 0 IN ENSMUST00000183536 Annotated NA Other O1 4 0.00742728792191128 -0.040301263684289 0.0322078853880955 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_86506870_86506900 ENSMUST00000186290.6 192 chr9:86506519+86507503 192 30 CCTACTAGAAGTATGAGGGTGCTGTGTCAG 1 81.3863738194 5.90905880402 0 chr9_+_86506870_86506900|81.3863738194|5.90905880402 0 IN ENSMUST00000186290 Annotated NA Neuronal N2 8 0.0755563621179865 0.00837232744452803 -0.0201207952826503 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chr9_+_86506878_86506900 ENSMUST00000186290.6 4 chr9:86506519+86507503 4 22 AAGTATGAGGGTGCTGTGTCAG 1 74.8455991374 5.94919226032 2.12718731518e-13 chr9_+_86506878_86506900|74.8455991374|5.94919226032 1.85518267414864e-13 IN ENSMUST00000186290 Novel NA Neuronal N4 13 0.0400149482018594 0.0173766281296331 0.0238876004036973 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chr9_+_86522865_86522874 ENSMUST00000185919.6 1 chr9:86521859+86522953 1 9 TATCATCAA 1 75.0935009232 4.57030762617 1.61080256349e-05 chr9_+_86522865_86522874|75.0935009232|4.57030762617 1.3818305776736e-05 IN ENSMUST00000185919 Novel Alt5 Excluded E2 3 -0.000135291308820511 -0.0024426892608263 0.00248694531841246 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_87038725_87038755 ENSMUST00000168529.8 0 chr9:87032461+87040381 0 30 ACTGTCATGAAGGAAAGAGAGTCTTAAATG 1 82.4447210955 1.8140588437 0 chr9_+_87038725_87038755|82.4447210955|1.8140588437 0 IN ENSMUST00000168529 Annotated NA Included I1 1 7.54886580827614e-140 2.36869889251627e-140 1.5432456604071e-139 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_88585396_88585419 ENSMUST00000164661.3 0 chr9:88584365+88586088 0 23 GACTTGGATGACTTGTTCAGAAG 1 91.4674484066 0.386703699137 2.4101609597e-11 chr9_+_88585396_88585419|91.4674484066|0.386703699137 3.90332210997713e-12 IN ENSMUST00000164661 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_+_90061518_90061529 ENSMUST00000123320.7 1 chr9:90060510+90062716 1 11 CATCAAAAGAC 1 72.9501517501 1.5986667042 2.04052568009e-06 chr9_+_90061518_90061529|72.9501517501|1.5986667042 1.93444088181227e-06 IN ENSMUST00000123320 Novel Alt3 Excluded E1 6 -0.000168843942827049 8.88884371974685e-05 -5.73957023857609e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_92258047_92258074 ENSMUST00000093801.9 0 chr9:92250424+92259273,chr9:92250360+92259273 0 27 AAACTGTTTAAATCATGGAAAACCACA 1 89.910293735 0.609677420764 0 chr9_+_92258047_92258074|89.910293735|0.609677420764 0 IN ENSMUST00000093801 Annotated NA Included I1 1 1.27132122391236e-82 2.18921868896722e-82 -7.18927637941093e-83 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_92281761_92281783 ENSMUST00000034932.13 13 chr9:92276013+92282111 13 22 TACCATCCATCACCACACACAG 1 80.9813409712 0.144038458426 1.3482548411e-12 chr9_+_92281761_92281783|80.9813409712|0.144038458426 5.22026866178749e-13 IN ENSMUST00000034932 Novel Alt5 Excluded E2 3 -0.0045468058101359 0.000592927005661714 0.000154606057932654 TRUE FALSE FALSE FALSE FALSE FALSE chr9_+_92471720_92471748 ENSMUST00000034941.8 0 chr9:92457925+92472901 0 28 GAATAATTAGAACTCATCAAAATGTCAG 1 93.3677985869 1.07124999166 0 chr9_+_92471720_92471748|93.3677985869|1.07124999166 0 IN ENSMUST00000034941 Annotated NA Included I1 1 -1.50063406565686e-18 -2.93148249802384e-18 3.64884466950692e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_102621272_102621294 ENSMUST00000093791.9 35 chr9:102619760-102621695,chr9:102619760-102626262 34,1 22 TCCCACATTGGGCTATTTCTTG 1 84.0741056468 0.320923075366 4.23883150802e-13 chr9_-_102621272_102621294|84.0741056468|0.320923075366 9.91429160990265e-14 IN ENSMUST00000093791 Annotated NA Excluded E1 6 0.00227489783253634 0.000510488177074913 0.00371362166504063 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_103204968_103204975 ENSMUST00000112645.7 2 chr9:103204178-103209033 2 7 GATGGTT 1 73.0362613676 None 0.0011542330948 chr9_-_103204968_103204975|73.0362613676|None 0.00109147426928546 IN ENSMUST00000112645 Novel NA Included I1 1 -2.10592232316264e-05 8.75754318944938e-05 -0.000282724475377712 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_104209868_104209883 ENSMUST00000035170.12 248 chr9:104209387-104212760 248 15 GACAAAAACCATATG 1 77.436138273 3.1854737354 1.2201780808e-08 chr9_-_104209868_104209883|77.436138273|3.1854737354 8.32033097974971e-09 IN ENSMUST00000035170 Annotated NA Neuronal N6 15 0.0147465419513064 -0.00527642620934642 0.0634806518107489 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_105493542_105493554 ENSMUST00000112558.9 602 chr9:105470147-105494414 602 12 ATGCTAGAAAAG 1 69.292702714 0.803312507458 5.64635999911e-06 chr9_-_105493542_105493554|69.292702714|0.803312507458 5.61349551575496e-06 IN ENSMUST00000112558 Annotated NA Neuronal N1 18 0.0605514047822538 0.0214097229347217 0.0242923239067375 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE TRUE chr9_-_105712496_105712508 ENSMUST00000098441.9 0 chr9:105709615-105715170,chr9:105709584-105715170,chr9:105709584-105715174 0 12 CTGGCAGACATG 1 86.490077731 1.18337501027 0.000330095565003 chr9_-_105712496_105712508|86.490077731|1.18337501027 5.85499602255846e-05 IN ENSMUST00000098441 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_105758162_105758189 ENSMUST00000098441.9 0 chr9:105755695-105758291 0 27 GGAACCAGAGGACTCAGTGGAGAAGAG 1 85.0416476727 1.51087097358 0 chr9_-_105758162_105758189|85.0416476727|1.51087097358 0 IN ENSMUST00000098441 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_105890365_105890377 ENSMUST00000190193.7 0 chr9:105889375-105892126,chr9:105889383-105892122 0 12 CCTGTTGGAAAG 1 88.4276131792 2.00825001299 0.000162290243378 chr9_-_105890365_105890377|88.4276131792|2.00825001299 2.56214610757644e-05 IN ENSMUST00000190193 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_105915312_105915339 ENSMUST00000190193.7 0 chr9:105915183-105915640 0 27 GGAGTCAAAGGATTTTCAGGAGCTCAG 1 82.2174317561 1.1894515915 0 chr9_-_105915312_105915339|82.2174317561|1.1894515915 0 IN ENSMUST00000190193 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_106013881_106013893 ENSMUST00000121963.2 0 chr9:106013797-106016495 0 12 CTTGCTCAACAG 1 89.6251376278 2.30937500857 0.000159846847069 chr9_-_106013881_106013893|89.6251376278|2.30937500857 2.47200586488416e-05 IN ENSMUST00000121963 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_106049831_106049858 ENSMUST00000121963.2 0 chr9:106047759-106051632 0 27 GGAGCAAGAGGATTTTCAGGAGAGAAG 1 82.6774656552 1.31916129998 0 chr9_-_106049831_106049858|82.6774656552|1.31916129998 0 IN ENSMUST00000121963 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_106196367_106196376 ENSMUST00000215742.1 3 chr9:106196157-106196592 3 9 GGTAGGCAG 1 81.0404852273 2.10746153616 6.28827029936e-06 chr9_-_106196367_106196376|81.0404852273|2.10746153616 2.40943484375311e-06 IN ENSMUST00000215742 Novel Alt5 Excluded E3 2 -0.000909504533001184 -0.00179735792229202 -0.00758174936119243 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_106436695_106436715 ENSMUST00000190803.1 1 chr9:106436220-106437628 1 20 ATGTGGTACCTGTCTTCAAG 1 77.1109657076 3.77658326769 4.91695573146e-12 chr9_-_106436695_106436715|77.1109657076|3.77658326769 3.49098527863134e-12 IN ENSMUST00000190803 Novel Alt5 Excluded E2 3 -0.000471161731571565 -0.000755179488898678 -0.00100758589346003 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_106941497_106941524 ENSMUST00000044532.10 0 chr9:106941378-106943906 0 27 AACCCAGCTGTTTGGGCCCTACCCCAG 1 74.576843218 4.89309680222 0 chr9_-_106941497_106941524|74.576843218|4.89309680222 0 IN ENSMUST00000044532 Annotated NA Included I2 10 0.00314667709185468 -0.0152013435168947 0.0126246752204501 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_107336784_107336794 ENSMUST00000035196.13 23 chr9:107336663-107337000 23 10 TGTGTTCCAG 1 69.6434595723 0.119357145125 1.20326804476e-06 chr9_-_107336784_107336794|69.6434595723|0.119357145125 1.19443417023746e-06 IN ENSMUST00000035196 Missing in GENCODE NA Excluded E2 3 -0.000787619791826357 0.00245738074991639 -0.00764833377934943 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_107760109_107760127 ENSMUST00000182659.7 41 chr9:107756992-107760321,chr9:107759849-107760321 3,38 18 GGATTTTCCTTTCCTTCG 1 82.8184727434 1.80390908307 2.55795384874e-11 chr9_-_107760109_107760127|82.8184727434|1.80390908307 7.24154070042005e-12 IN ENSMUST00000182659 Novel NA Excluded E1 6 8.93179288519611e-05 7.78517748513712e-05 0.000201104353017372 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_108449755_108449785 ENSMUST00000195435.5 0 chr9:108449288-108450875 0 30 ATGGTATGGTGTATGCTCTGGGGGGAATGG 1 72.7600476786 3.57847057718 0 chr9_-_108449755_108449785|72.7600476786|3.57847057718 0 IN ENSMUST00000195435 Annotated Alt3 Excluded E3 2 -0.000542874540511914 -0.00113778589070175 -0.0024209325336438 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_108609777_108609799 ENSMUST00000193190.5 31 chr9:108608753-108609896 31 22 CAATGCTCCAAGTGTAAGCACG 1 84.1316616743 5.27342318228 2.48023823701e-13 chr9_-_108609777_108609799|84.1316616743|5.27342318228 5.75095526755831e-14 IN ENSMUST00000193190 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_110107940_110107969 ENSMUST00000198425.4 351 chr9:110098859-110109025 351 29 GCTGAACGTTAACATTTCCAACATGGCAG 1 78.2402999018 2.30284846551 0 chr9_-_110107940_110107969|78.2402999018|2.30284846551 0 IN ENSMUST00000198425 Annotated NA Excluded E3 2 0.00453909529460021 -0.00779398104208061 0.0123839848612094 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_110115035_110115051 ENSMUST00000196171.4 1 chr9:110113025-110115490 1 16 CACTTGGCAGCCCAAG 1 84.2382801582 0.0482500068843 2.22371454583e-09 chr9_-_110115035_110115051|84.2382801582|0.0482500068843 5.08461717174669e-10 IN ENSMUST00000196171 Novel Alt5 Excluded E1 6 0.000274113271409574 0.000276842449829055 0.00117354564664293 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_112157302_112157317 ENSMUST00000159667.7 1 chr9:112155519-112157689 1 15 CTCTGTCCTTCCGTT 1 67.5603940368 2.2375789222 7.82529241405e-09 chr9_-_112157302_112157317|67.5603940368|2.2375789222 7.81170617081273e-09 IN ENSMUST00000159667 Novel NA FALSE TRUE FALSE 15.5 1 FALSE FALSE FALSE chr9_-_118068807_118068828 ENSMUST00000044220.10 1 chr9:118065348-118075121 1 21 GACCTACAGCCTTTTAGAAAG 1 82.7163772586 None 8.65796323524e-12 chr9_-_118068807_118068828|82.7163772586|None 2.49200660107363e-12 IN ENSMUST00000044220 Novel NA Excluded E1 6 0.000463050982997769 0.000363567968418098 -0.000409207272722957 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_118135863_118135889 ENSMUST00000044220.10 90 chr9:118115429-118150016,chr9:118115429-118150067 89,1 26 ATCGTTGGATTGACTCTGGTCGATTG 1 84.0544944749 0.127933331393 0 chr9_-_118135863_118135889|84.0544944749|0.127933331393 0 IN ENSMUST00000044220 Missing in GENCODE NA Excluded E2 3 -0.00084568147173799 0.00216515225311424 -0.000107062967893659 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_121246882_121246911 ENSMUST00000171923.7 94 chr9:121244444-121248924 94 29 TTTGCTCTACGTATAGGAAACCAAATTTA 1 74.0885664693 0.268212125157 0 chr9_-_121246882_121246911|74.0885664693|0.268212125157 0 IN ENSMUST00000171923 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_121856437_121856455 ENSMUST00000215007.1 1 chr9:121852609-121857511 1 18 ATATAGGTCAGTCATTGG 1 82.1328067872 -0.0148181810298 2.77395884041e-10 chr9_-_121856437_121856455|82.1328067872|-0.0148181810298 8.79812889209575e-11 IN ENSMUST00000215007 Novel Alt5 Excluded E1 6 -7.15225878367778e-05 0.00024468340701525 -0.00110946122644212 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_123708072_123708087 ENSMUST00000168921.1 1 chr9:123707986-123709553 1 15 ACCATTGAAATACAG 1 71.6690036071 2.75494738668 5.63159119338e-09 chr9_-_123708072_123708087|71.6690036071|2.75494738668 5.48707046466035e-09 IN ENSMUST00000168921 Novel Alt5 Excluded E4 11 -0.00506697214889396 -0.0041342528724085 -0.0200474723149475 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_20478132_20478158 ENSMUST00000169558.7 0 chr9:20476478-20486329,chr9:20475033-20486329 0 26 GATGGCAGCTCCTGCTTCGTCCCATG 1 85.7373954285 0.357899996887 2.18070006497e-12 chr9_-_20478132_20478158|85.7373954285|0.357899996887 4.15556478117196e-13 IN ENSMUST00000169558 Annotated Alt5 Excluded E1 6 -0.000383938996854085 -0.00110619296988118 0.000489540925432481 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_21804609_21804624 ENSMUST00000217336.1 0 chr9:21803118-21804718 0 15 AGCTCTGGCTGGGAG 1 87.7767156211 3.51494739871 1.47241990711e-06 chr9_-_21804609_21804624|87.7767156211|3.51494739871 2.3902335444248e-07 IN ENSMUST00000217336 Annotated NA Included I1 1 -4.49060904885186e-38 -5.66260779712875e-39 3.57016460462776e-38 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_22351875_22351897 ENSMUST00000040912.8 0 chr9:22351032-22352213 0 22 AAAAGCAGCCTTCATTCTTCAG 1 86.6446883434 2.16980769385 6.56541487842e-11 chr9_-_22351875_22351897|86.6446883434|2.16980769385 1.14954712415738e-11 IN ENSMUST00000040912 Annotated NA Included I1 1 2.62237461003878e-38 1.26482360620726e-38 1.62463183290817e-38 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_24426133_24426158 ENSMUST00000115277.8 0 chr9:24424845-24430430 0 25 AAAACAACAATTTGAACATGGAGAG 1 90.3131168736 1.79672415678 4.93471929985e-12 chr9_-_24426133_24426158|90.3131168736|1.79672415678 7.67941266133221e-13 IN ENSMUST00000115277 Annotated NA Included I1 1 -1.1651960676452e-28 1.88554981052288e-27 3.41653514151153e-28 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_24485704_24485729 ENSMUST00000115277.8 0 chr9:24485101-24487786,chr9:24485101-24493947,chr9:24485101-24502838 0 25 CTTCCTTTGCAGCTCTATTGCACTG 1 90.5117490427 2.56468963058 2.35900188272e-12 chr9_-_24485704_24485729|90.5117490427|2.56468963058 3.68705066478014e-13 IN ENSMUST00000115277 Annotated NA Included I1 1 7.7542083151524e-22 5.4236196089186e-21 -2.24650067150539e-21 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_24587041_24587066 ENSMUST00000133010.3 0 chr9:24585627-24617440 0 25 AAAACAGCTTCTTGACAACGCTGAG 1 86.806687672 1.68300001522 2.82298628917e-11 chr9_-_24587041_24587066|86.806687672|1.68300001522 4.87943019322756e-12 IN ENSMUST00000133010 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_35129460_35129483 ENSMUST00000155139.1 0 chr9:35126417-35171182 0 23 ACCTCAAGTGGAACCAGCAGCAG 1 85.1505449195 4.04637034127 6.35765218249e-10 chr9_-_35129460_35129483|85.1505449195|4.04637034127 1.29326438447208e-10 IN ENSMUST00000155139 Annotated Alt5 Excluded E2 3 -3.81486497921703e-05 -0.000136009956327029 0.00202860284481977 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_36741127_36741150 ENSMUST00000120381.8 65 chr9:36735541-36741488 65 23 TTAAACAATTCTGGAGATTTAAA 1 85.6466937584 0.295185175897 0 chr9_-_36741127_36741150|85.6466937584|0.295185175897 0 IN ENSMUST00000120381 Novel NA Excluded E1 6 0.000443926023485905 0.000112855128247521 0.000738260979188528 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_37420137_37420161 ENSMUST00000171467.7 0 chr9:37420059-37420887 0 24 CCTCCTTTGCCTACACACCTGCAG 1 83.8845194761 4.1465357095 2.84217094304e-12 chr9_-_37420137_37420161|83.8845194761|4.1465357095 6.83120227051859e-13 IN ENSMUST00000171467 Annotated NA Included I1 1 2.20395287469122e-05 -0.00010670296493733 -5.83902390132527e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_37545699_37545717 ENSMUST00000065668.11 0 chr9:37545331-37545947,chr9:37545331-37546087 0 18 AGCTGAACGTTTTAGAAG 1 73.4587647316 1.50654546036 8.64383764565e-09 chr9_-_37545699_37545717|73.4587647316|1.50654546036 8.06117683715968e-09 IN ENSMUST00000065668 Annotated NA Included I1 1 -4.12249243206871e-40 1.89325465435461e-38 -3.30262706051438e-38 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_40300439_40300451 ENSMUST00000045682.6 887 chr9:40300096-40303497 887 12 GATCTGTTTCAG 1 76.3696426931 3.83387496322 7.88131418239e-07 chr9_-_40300439_40300451|76.3696426931|3.83387496322 6.07270043473385e-07 IN ENSMUST00000045682 Annotated NA Neuro-Muscular NM4 16 0.0168423062620473 -0.0161176759901997 0.0112426361157648 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_40327417_40327438 ENSMUST00000045682.6 0 chr9:40317593-40333444 0 21 AAAAGCCAGAGTTGGTACAAT 1 89.5548067172 3.82391996622 3.59841578756e-09 chr9_-_40327417_40327438|89.5548067172|3.82391996622 5.56549473174073e-10 IN ENSMUST00000045682 Annotated NA Included I1 1 -1.33051569882821e-14 1.94211576615887e-14 3.39630239348117e-14 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_43044263_43044287 ENSMUST00000165665.8 0 chr9:43042676-43105178,chr9:43042676-43107163 0 24 GTTTCCCCTCAAAAAACCTATAAG 1 92.2208557701 3.25328577416 2.21952234369e-10 chr9_-_43044263_43044287|92.2208557701|3.25328577416 3.76242370592195e-11 IN ENSMUST00000165665 Annotated NA Included I1 1 3.98294259737657e-52 -1.32116903032069e-52 -1.10567098122233e-51 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_44250997_44251025 ENSMUST00000034618.5 0 chr9:44250856-44251439 0 28 ATCTTCGGGACACGGCCTTGTTAACTCT 1 80.5418504653 1.09615624251 0 chr9_-_44250997_44251025|80.5418504653|1.09615624251 0 IN ENSMUST00000034618 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_44275378_44275408 ENSMUST00000085979.10 0 chr9:44274507-44277457 0 30 GTGGTATGCCCAGTGGTGTACTGCAGCATC 1 67.3330011173 3.84970593581 0 chr9_-_44275378_44275408|67.3330011173|3.84970593581 0 IN ENSMUST00000085979 Annotated Alt3 Excluded E3 2 -0.00172787280128539 0.00144749938210012 -0.00274876682615225 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_44341625_44341635 ENSMUST00000216852.1 1 chr9:44341264-44342017 1 10 TTTGAAATCA 1 73.7751329857 3.31864291696 2.75298574626e-06 chr9_-_44341625_44341635|73.7751329857|3.31864291696 2.53625001622737e-06 IN ENSMUST00000216852 Novel Alt5 Excluded E1 6 5.16547032451584e-05 0.000201715521102411 0.000351828334775539 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_44937632_44937640 ENSMUST00000117506.8 1 chr9:44935501-44937848 1 8 CCATACAG 1 76.5949985366 5.42941673348 0.00013916716505 chr9_-_44937632_44937640|76.5949985366|5.42941673348 0.000104756964646291 IN ENSMUST00000117506 Novel Alt5 Excluded E2 3 -0.00115819384547377 -0.00230616792306293 -0.00203691293476204 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_44975246_44975270 ENSMUST00000160886.1 591 chr9:44974390-44980265 591 24 GCACTGTAGCCCAGACAAATAAAG 1 91.9758542279 0.436178580459 0 chr9_-_44975246_44975270|91.9758542279|0.436178580459 0 IN ENSMUST00000160886 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_45005511_45005526 ENSMUST00000102832.2 0 chr9:45002353-45007175 0 15 ATGCCGAGAACATTG 1 85.1020003637 -0.0885263261826 4.47313232343e-06 chr9_-_45005511_45005526|85.1020003637|-0.0885263261826 9.15179743654626e-07 IN ENSMUST00000102832 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_45007175_45007193 ENSMUST00000102832.2 0 chr9:45005526-45009347 0 18 TTGGCACTTGCCAGGACG 1 86.7241343057 0.992636364885 5.52827243983e-08 chr9_-_45007175_45007193|86.7241343057|0.992636364885 9.61767687712722e-09 IN ENSMUST00000102832 Annotated Alt3 FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_45947540_45947552 ENSMUST00000038488.16 842 chr9:45947055-45947835,chr9:45947055-45948214 797,45 12 CTTCTCTCCTTG 1 79.3946314348 2.65631251875 1.77882595986e-07 chr9_-_45947540_45947552|79.3946314348|2.65631251875 9.05525164851539e-08 IN ENSMUST00000038488 Annotated NA Neuro-Muscular NM2 9 0.0640417865051737 -0.0421695366816894 -0.00594442607676715 TRUE TRUE TRUE 10.5 1 12.5 1 TRUE TRUE FALSE chr9_-_48490839_48490843 ENSMUST00000170000.3 4 chr9:48489988-48490847 4 4 GCAG 1 64.1826458875 1.38999999221 0.0129013829304 chr9_-_48490839_48490843|64.1826458875|1.38999999221 0.0128998004913112 IN ENSMUST00000170000 Novel NA Excluded E3 2 -0.000807783426559477 0.00562350345050451 -0.0141557317690616 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_49471861_49471883 ENSMUST00000055096.4 0 chr9:49471203-49472382 0 22 AATGCAGATGAAATGAGCCCAG 1 84.9652055342 1.10280770878 6.55404619465e-11 chr9_-_49471861_49471883|84.9652055342|1.10280770878 1.36327615862797e-11 IN ENSMUST00000055096 Annotated Alt5 Other O2 21 0.00285533010680518 -0.00485476726431666 0.000467705861289416 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_49531973_49531976 ENSMUST00000194252.5 0 chr9:49523646-49535208,chr9:49531973-49543010,chr9:49523646-49543010,chr9:49523646-49541887 0 3 AAG 1 73.3189660783 6.006571361 1 chr9_-_49531973_49531976|73.3189660783|6.006571361 0.937159565723028 RESCUED ENSMUST00000194252 Annotated NA Non-Neuronal NN1 23 -0.0687728491268975 -0.0449039477357155 0.0153155734599447 TRUE TRUE TRUE 13.5 -1 FALSE FALSE FALSE chr9_-_49541887_49541902 ENSMUST00000192584.1 473 chr9:49523646-49543010,chr9:49531973-49543010 471,2 15 ATAGCCCTCCTCCAC 1 75.56731098 2.66878946361 4.00832497194e-08 chr9_-_49541887_49541902|75.56731098|2.66878946361 3.32007842329674e-08 IN ENSMUST00000192584 Annotated NA Muscular M1 22 -0.00217495168303861 -0.0901750703276888 -0.0177716828332629 TRUE FALSE FALSE TRUE TRUE FALSE chr9_-_49550539_49550569 ENSMUST00000193547.5 2292 chr9:49546308-49557095 2292 30 GCATCGTGGACTCGACCAGAGAAGCAAGAG 1 81.7090604616 4.50182356072 0 chr9_-_49550539_49550569|81.7090604616|4.50182356072 0 IN ENSMUST00000193547 Annotated NA Neuro-Muscular NM4 16 0.0184499291770956 -0.0229484317672578 0.0391215728942055 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_50525261_50525284 ENSMUST00000034570.6 0 chr9:50524964-50526869,chr9:50524779-50528556,chr9:50524779-50526869 0 23 TTGTGGTGACAGTCCATGGAGAG 1 88.1474289184 2.61562960788 2.66879851551e-11 chr9_-_50525261_50525284|88.1474289184|2.61562960788 4.25814938864733e-12 IN ENSMUST00000034570 Annotated Alt3 Included I2 10 -0.0167331720658022 -0.00493281054553849 -0.0116975772113319 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_50616657_50616684 ENSMUST00000131351.7 13 chr9:50615559-50617227 13 27 GATGCCTGATTTCCTCAGGATCGAGGG 1 80.0570263877 1.93158064638 0 chr9_-_50616657_50616684|80.0570263877|1.93158064638 0 IN ENSMUST00000131351 Annotated NA Excluded E4 11 2.79240807601205e-06 0.0077563744155204 0.00259356207057126 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_51076321_51076345 ENSMUST00000214993.1 298 chr9:51074145-51076885 298 24 CCTCGGACTTGGACCCCAGAGGAG 1 73.740675328 1.17510716344 0 chr9_-_51076321_51076345|73.740675328|1.17510716344 0 IN ENSMUST00000214993 Annotated NA Neuronal N5 14 0.0346650994613633 0.00381909464964247 0.0147453145356612 TRUE FALSE TRUE FALSE FALSE FALSE chr9_-_53451659_53451689 ENSMUST00000132249.1 0 chr9:53450634-53453352 0 30 GTTGATCCCACAGGAGAGTATGAAAATCTG 1 77.6043524096 3.38252941382 0 chr9_-_53451659_53451689|77.6043524096|3.38252941382 0 IN ENSMUST00000132249 Annotated Alt3 Excluded E3 2 -0.00116612954167634 -0.00333867617850723 0.003054444197268 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_53461111_53461120 ENSMUST00000118282.7 0 chr9:53461010-53462480 0 9 TCTTTTCAG 1 76.2000820147 0.0946153814976 0.00554252293767 chr9_-_53461111_53461120|76.2000820147|0.0946153814976 0.00434244328804301 IN ENSMUST00000118282 Annotated NA FALSE TRUE FALSE FALSE FALSE FALSE chr9_-_53923941_53923965 ENSMUST00000166580.1 128 chr9:53921373-53924399 128 24 GGATATCACTAAGGAGGAAATAAG 1 71.921566499 2.78125000319 0 chr9_-_53923941_53923965|71.921566499|2.78125000319 0 IN ENSMUST00000166580 Missing in GENCODE NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_53935560_53935589 ENSMUST00000215313.1 0 chr9:53934214-53935729 0 29 AAACGTCACTGAGAGATTCAAAAAGCAAG 1 82.5700875836 2.91475750461 0 chr9_-_53935560_53935589|82.5700875836|2.91475750461 0 IN ENSMUST00000215313 Annotated NA Included I1 1 -3.20010765488097e-06 1.87849088087228e-05 5.54311503816624e-06 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_54730633_54730656 ENSMUST00000130368.7 0 chr9:54728275-54731386 0 23 TATTCTCTTCAAGCAAGAGCAAG 1 86.1766097207 4.66829625545 4.38262759417e-11 chr9_-_54730633_54730656|86.1766097207|4.66829625545 7.99527111183806e-12 IN ENSMUST00000130368 Annotated NA Included I1 1 -1.46893551271306e-106 2.16177831436266e-107 -6.40876117462622e-107 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_54730633_54730661 ENSMUST00000118771.7 0 chr9:54728275-54731386 0 28 TACAGTATTCTCTTCAAGCAAGAGCAAG 1 87.8908264013 4.66687496565 0 chr9_-_54730633_54730661|87.8908264013|4.66687496565 0 IN ENSMUST00000118771 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_57143978_57144006 ENSMUST00000190245.6 0 chr9:57143819-57144186 0 28 GGTGATCCCGGACCCTTGGCACCCAAAG 1 89.5020844293 3.5886875554 0 chr9_-_57143978_57144006|89.5020844293|3.5886875554 0 IN ENSMUST00000190245 Annotated NA Included I1 1 -5.16181768952413e-24 -8.81410665906012e-23 -7.7566475217982e-24 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_57156749_57156758 ENSMUST00000214640.1 0 chr9:57156555-57156774,chr9:57156555-57157066 0 9 GGGATTGAT 1 71.9347902293 0.248230768511 0.000785508471495 chr9_-_57156749_57156758|71.9347902293|0.248230768511 0.000762035001706796 IN ENSMUST00000214640 Annotated NA Excluded E2 3 0.000377812053497606 -0.00068782695282085 0.00336346793765811 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_57156774_57156783 ENSMUST00000214097.1 207 chr9:57156555-57157066 207 9 GGGATTGAT 2 76.38017334 2.11669236594 7.42075079596e-06 chr9_-_57156749_57156758|71.9347902293|0.248230768511,chr9_-_57156774_57156783|76.38017334|2.11669236594 0.500002855882599 RESCUED ENSMUST00000214097 Novel Alt5 Excluded E1 6 -6.17867052068317e-05 -0.000176445568757167 0.0010202589416638 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_57421125_57421144 ENSMUST00000213194.1 0 chr9:57398845-57434902,chr9:57409014-57434902,chr9:57420291-57434929,chr9:57420291-57421277,chr9:57420291-57434902,chr9:57415254-57434902,chr9:57414726-57434902 0 19 TGACGCTGATGAATGGGAG 1 80.993080053 3.53647832087 3.50337359123e-09 chr9_-_57421125_57421144|80.993080053|3.53647832087 1.35356581498769e-09 IN ENSMUST00000213194 Annotated Alt5 Excluded E2 3 -0.000527367342157728 -0.00146620361538981 -1.68418285188153e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_57758707_57758723 ENSMUST00000217409.1 5 chr9:57758350-57760823 5 16 AGAAGCCAACAGAGCA 1 69.6751896198 4.03964998424 2.23099050345e-09 chr9_-_57758707_57758723|69.6751896198|4.03964998424 2.21426754709597e-09 IN ENSMUST00000217409 Novel Alt3 Excluded E1 6 -0.0004060276472794 -1.25345641251989e-05 -0.000524599072040404 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_63217338_63217365 ENSMUST00000034920.10 0 chr9:63217025-63235288 0 27 ATTCAGAAAAACCAGGGATCTTTAATG 1 87.0250000665 4.67341930636 0 chr9_-_63217338_63217365|87.0250000665|4.67341930636 0 IN ENSMUST00000034920 Annotated NA Included I1 1 -2.21267521664649e-69 2.05190422011167e-69 4.01363465511375e-69 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_63235288_63235318 ENSMUST00000034920.10 0 chr9:63217365-63256976 0 30 CTTGCTCTTGGGAGGTTTCCATATCCTCAG 1 90.4645855553 4.44247059436 0 chr9_-_63235288_63235318|90.4645855553|4.44247059436 0 IN ENSMUST00000034920 Annotated NA Included I1 1 -1.86522698858566e-77 2.67306513025827e-77 5.23015001588933e-77 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_64149398_64149427 ENSMUST00000122091.7 0 chr9:64149334-64150155,chr9:64147406-64150155 0 29 GTCAGGAACTTGCATCTTTGAATCATTTG 1 85.0865323971 2.88590903518 0 chr9_-_64149398_64149427|85.0865323971|2.88590903518 0 IN ENSMUST00000122091 Annotated NA Included I1 1 -9.32576882437894e-19 -2.97483115282035e-19 -2.85755068633892e-18 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_64725573_64725582 ENSMUST00000169058.7 0 chr9:64716988-64726623,chr9:64716965-64726623 0 9 AGAAGAATG 1 82.5727116136 4.01507691409 0.036039082332 chr9_-_64725573_64725582|82.5727116136|4.01507691409 0.0106201091057339 IN ENSMUST00000169058 Annotated Alt3 Excluded E1 6 -9.93637497413564e-05 4.98018427427529e-05 -0.000285879455420295 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_7045348_7045369 ENSMUST00000048417.12 380 chr9:7044428-7049082 380 21 ATTATTGGTTTGAAGTCATGG 1 77.0765425766 2.46720001072 4.11137790479e-12 chr9_-_7045348_7045369|77.0765425766|2.46720001072 2.93109980731288e-12 IN ENSMUST00000048417 Annotated NA Neuro-Muscular NM1 12 0.0606272367742391 -0.102614755999902 -0.00429588449693753 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chr9_-_72015699_72015711 ENSMUST00000183594.1 1 chr9:72000518-72109675 1 12 GTATGGATGAGC 1 71.3333349216 2.77525001438 2.54110464158e-05 chr9_-_72015699_72015711|71.3333349216|2.77525001438 2.48752322512535e-05 IN ENSMUST00000183594 Novel Alt3 Excluded E2 3 -0.00128621097617203 -0.00104310509552353 -0.00294419067550956 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_72491925_72491952 ENSMUST00000185106.7 0 chr9:72491818-72492036 0 27 ATGGCGGGGCGAAGTGTTAGAGTGCCG 1 72.645142784 0.331677435387 0 chr9_-_72491925_72491952|72.645142784|0.331677435387 0 IN ENSMUST00000185106 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_73757951_73757957 ENSMUST00000184666.7 0 chr9:73756406-73758598 0 6 GCCATG 1 82.3166615239 4.26709992029 0.412723795679 chr9_-_73757951_73757957|82.3166615239|4.26709992029 0.126909737621478 RESCUED ENSMUST00000184666 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_73812950_73812973 ENSMUST00000184666.7 0 chr9:73812390-73930596 0 23 ATAGCAGCTCTATGGATGAAAAG 1 77.6661206958 3.04622226484 1.67942459939e-09 chr9_-_73812950_73812973|77.6661206958|3.04622226484 1.11118780843356e-09 IN ENSMUST00000184666 Annotated NA Included I1 1 -1.32895682121174e-05 6.1974339151607e-05 2.76907527422475e-05 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_75521366_75521378 ENSMUST00000072232.8 239 chr9:75516595-75529368 239 12 GTAGACTCCCAG 1 81.0668291079 0.0381250055507 2.97021611029e-06 chr9_-_75521366_75521378|81.0668291079|0.0381250055507 1.1328358877627e-06 IN ENSMUST00000072232 Missing in GENCODE Alt3 Excluded E1 6 0.00198332156820491 6.76392282006744e-05 0.00142184195047835 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_77249668_77249696 ENSMUST00000183955.7 2 chr9:77243727-77251746 2 28 TTCACTGAATTCTGCTGCCTACATCCAG 1 76.5467647211 -0.0349687463604 0 chr9_-_77249668_77249696|76.5467647211|-0.0349687463604 0 IN ENSMUST00000183955 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_77448634_77448660 ENSMUST00000183873.7 19 chr9:77442292-77451357 19 26 CTGCTTGGAAATTTTAGAAAAGTCAG 1 79.7316466621 2.86173334718 0 chr9_-_77448634_77448660|79.7316466621|2.86173334718 0 IN ENSMUST00000183873 Novel NA Excluded E1 6 0.00260091637531269 0.000315516547849898 0.00563313945312511 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_7824515_7824527 ENSMUST00000190341.6 1 chr9:7821219-7825614 1 12 CAGTATGGAAAT 1 76.1458750783 None 1.01956486898e-06 chr9_-_7824515_7824527|76.1458750783|None 8.02948800004977e-07 IN ENSMUST00000190341 Novel NA Excluded E1 6 0.000427660975163923 -0.000100607645437615 0.00225392198512645 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_7939041_7939046 ENSMUST00000065353.12 224 chr9:7938538-7950491,chr9:7938538-7952952 154,70 5 AGCCG 1 78.9871817168 -0.0314444361462 0.044540431837 chr9_-_7939041_7939046|78.9871817168|-0.0314444361462 0.0242348203754296 IN ENSMUST00000065353 Novel NA Neuronal N6 15 0.00961537640991824 0.000490936981824055 0.0301010818625387 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_79656578_79656605 ENSMUST00000071750.12 0 chr9:79655541-79656711 0 27 TGCGTCTGATACCCTTAACAACACAAG 1 83.4248998976 1.90061292466 0 chr9_-_79656578_79656605|83.4248998976|1.90061292466 0 IN ENSMUST00000071750 Annotated NA Included I1 1 6.99041922689216e-18 1.26331732961738e-16 3.966262430685e-17 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_80383516_80383537 ENSMUST00000085289.11 0 chr9:80381877-80386881 0 21 ACCAAAGAAAGAAGAAGATGG 1 65.3200248054 1.66432000041 1.13209353003e-09 chr9_-_80383516_80383537|65.3200248054|1.66432000041 1.13173992399851e-09 IN ENSMUST00000085289 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_80434996_80435025 ENSMUST00000085289.11 0 chr9:80404805-80435298 0 29 AGAATAAAACAGAGAAGCTTCCCTGGGAG 1 94.5408090706 1.98590908425 0 chr9_-_80434996_80435025|94.5408090706|1.98590908425 0 IN ENSMUST00000085289 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_82974926_82974956 ENSMUST00000034787.11 0 chr9:82974733-82975087 0 30 GTGCTGATCCGCGAAGTGGCCGAGAAGGAG 1 90.1123785752 2.05029410075 0 chr9_-_82974926_82974956|90.1123785752|2.05029410075 0 IN ENSMUST00000034787 Annotated NA Included I1 1 -2.85602466998712e-119 -5.33840428344622e-120 -5.60357971356785e-119 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_83114772_83114802 ENSMUST00000187193.6 0 chr9:83112270-83120372 0 30 CCCACAAGACGGTCGGCCAGGTTGTCCGCG 1 83.9078595328 2.90405878403 0 chr9_-_83114772_83114802|83.9078595328|2.90405878403 0 IN ENSMUST00000187193 Annotated NA Included I1 1 3.36690154246809e-82 -3.66544897456302e-82 -9.32434530469532e-82 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_86798829_86798844 ENSMUST00000098495.9 1996 chr9:86783434-86804454,chr9:86798699-86804454 1,1995 15 ACCTTTTGGGAGAGG 1 72.3273244081 3.87663155167 2.08674462154e-08 chr9_-_86798829_86798844|72.3273244081|3.87663155167 2.00908519820686e-08 IN ENSMUST00000098495 Annotated NA Neuronal N5 14 0.0497015446452365 0.0833884444934536 -0.035724979855447 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_86809520_86809548 ENSMUST00000098495.9 0 chr9:86806578-86815429,chr9:86806578-86809650 0 28 ATCTGGTGCTCCCTCTCCACTAAGTAAG 1 88.892929665 3.33175007114 0 chr9_-_86809520_86809548|88.892929665|3.33175007114 0 IN ENSMUST00000098495 Annotated NA Included I1 1 2.93022233284032e-24 -2.19594288969249e-24 -7.17750013008333e-24 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_88400722_88400749 ENSMUST00000165315.7 1240 chr9:88398371-88401919 1240 27 AGGTAGCCTAAGTTTGGATGATTTCCG 1 82.0805678732 4.38435482787 0 chr9_-_88400722_88400749|82.0805678732|4.38435482787 0 IN ENSMUST00000165315 Annotated NA Neuro-Muscular NM1 12 0.0608333652688179 -0.0475001196138494 -0.0113684131362483 TRUE TRUE TRUE 11.5 1 12.5 1 TRUE TRUE FALSE chr9_-_89088298_89088321 ENSMUST00000167113.7 0 chr9:89087629-89089360 0 23 GACTTGGATGACTTGTTCAGAAG 1 91.4674484066 0.133925924423 2.42152964347e-11 chr9_-_89088298_89088321|91.4674484066|0.133925924423 3.9217518121859e-12 IN ENSMUST00000167113 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_89138025_89138050 ENSMUST00000187015.6 0 chr9:89137141-89138784 0 25 GTGGAAGAAAGAAAACAGAGACGCA 1 78.5144765148 -0.126379310057 1.4335199694e-12 chr9_-_89138025_89138050|78.5144765148|-0.126379310057 8.39883718128931e-13 IN ENSMUST00000187015 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chr9_-_95773026_95773047 ENSMUST00000093800.8 56 chr9:95769172-95773517 56 21 ATTTGACCCCTCCTAATGTAG 1 72.6467310127 4.08387998581 3.8369307731e-12 chr9_-_95773026_95773047|72.6467310127|4.08387998581 3.66706665033689e-12 IN ENSMUST00000093800 Novel NA Excluded E1 6 0.00107355050282982 -0.00147094352393825 0.00469164956171654 TRUE FALSE FALSE FALSE FALSE FALSE chr9_-_97084392_97084413 ENSMUST00000085206.10 14 chr9:97080482-97085056 14 21 GATTATTTCCAGAAGCCATGG 1 79.7656209458 None 4.04032363122e-12 chr9_-_97084392_97084413|79.7656209458|None 1.93223215205762e-12 IN ENSMUST00000085206 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_+_100381454_100381478 ENSMUST00000113781.7 152 chrX:100310099+100389701 152 24 GTCCTGTTAAAAACAAGAAAAAGG 1 86.5695927467 2.7835713923 0 chrX_+_100381454_100381478|86.5695927467|2.7835713923 0 IN ENSMUST00000113781 Annotated NA Included I1 1 -0.000684434240222977 -0.000359359495892443 0.000969833322240125 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_100606615_100606643 ENSMUST00000113769.7 0 chrX:100605583+100606882,chrX:100605704+100606882 0 28 GAAAGATTCAACTGGCCAGCATGTCCAC 1 82.2134611844 0.893093762919 0 chrX_+_100606615_100606643|82.2134611844|0.893093762919 0 IN ENSMUST00000113769 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_+_100617229_100617253 ENSMUST00000113769.7 0 chrX:100616983+100617424 0 24 CATTCTAGGAGGTCTGCCAGCCAG 1 86.0921228586 2.11789286469 1.46727074934e-12 chrX_+_100617229_100617253|86.0921228586|2.11789286469 2.69784194983913e-13 IN ENSMUST00000113769 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_+_100617718_100617728 ENSMUST00000113769.7 0 chrX:100617489+100618329 0 10 TGGCTACCAG 1 82.755530549 0.704642857824 0.000787422176319 chrX_+_100617718_100617728|82.755530549|0.704642857824 0.000225202788222911 IN ENSMUST00000113769 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_+_100738116_100738142 ENSMUST00000019503.13 0 chrX:100737833+100738229 0 26 GGGATGTGCTAAGAGAAACAGAACAG 1 84.4883916536 1.24296666073 8.12683254026e-14 chrX_+_100738116_100738142|84.4883916536|1.24296666073 1.79856129989275e-14 IN ENSMUST00000019503 Annotated NA Included I1 1 2.10573435507439e-08 -1.94125975043636e-07 -4.96244682501732e-08 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_101590733_101590739 ENSMUST00000118878.7 1224 chrX:101590589+101593939 1224 6 GCTAAG 1 86.6484172282 2.10819997787 0.00318020613326 chrX_+_101590733_101590739|86.6484172282|2.10819997787 0.000556657768627233 IN ENSMUST00000118878 Annotated NA Neuronal N4 13 0.039159135221748 0.00865301826569368 0.0373953870648053 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chrX_+_109112830_109112859 ENSMUST00000133614.7 2 chrX:109095637+109149914 2 29 ACTACCACACTGTGCTCAGTCATTGGCAA 1 78.1049206675 0.035242421609 0 chrX_+_109112830_109112859|78.1049206675|0.035242421609 0 IN ENSMUST00000133614 Novel NA Excluded E1 6 0.000680857882425607 -0.000247111088244228 0.000763385990208273 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_120637594_120637624 ENSMUST00000113358.9 111 chrX:120594785+120726500 111 30 CGGCGATCTGATGGGAAAAAAGCAGGAAAG 1 81.9819250596 0.934735281393 0 chrX_+_120637594_120637624|81.9819250596|0.934735281393 0 IN ENSMUST00000113358 Annotated NA Included I2 10 0.00125514961896053 -0.000987079561732625 -0.00564899456485056 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_120811139_120811163 ENSMUST00000195088.5 478 chrX:120726699+120899554,chrX:120726699+120905697 20,458 24 CTTTCATTCCTGGACTAAAGAAAG 1 75.033044652 1.28664283082 0 chrX_+_120811139_120811163|75.033044652|1.28664283082 0 IN ENSMUST00000195088 Annotated NA Included I2 10 0.00137112926266432 -0.00267160025415858 -0.00391920428754346 TRUE TRUE TRUE 14.5 1 FALSE FALSE FALSE chrX_+_129825926_129825947 ENSMUST00000167619.8 271 chrX:129821343+129902899 271 21 ATAGTTGGAAGTAAAGTTCTG 1 80.400014736 4.63796002269 7.24140747366e-11 chrX_+_129825926_129825947|80.400014736|4.63796002269 3.10398373670751e-11 IN ENSMUST00000167619 Annotated NA Included I3 5 -0.00170662816285174 0.00886614922118926 0.0292210290433098 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_13042359_13042367 ENSMUST00000127521.1 388 chrX:13042109+13043556 388 8 TTTGGAAG 1 77.7591356556 -0.633500008145 8.55290099874e-05 chrX_+_13042359_13042367|77.7591356556|-0.633500008145 5.58842217585065e-05 IN ENSMUST00000127521 Novel NA Excluded E3 2 0.0105692864848056 -0.0171251558360406 -0.0145165768613928 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_13092957_13092978 ENSMUST00000169594.8 42 chrX:13072325+13093923 42 21 AACTGAAGAATCAGACTGCAG 1 83.4675749125 0.0176800012589 1.91606730482e-11 chrX_+_13092957_13092978|83.4675749125|0.0176800012589 4.89908114076343e-12 IN ENSMUST00000169594 Novel NA Excluded E1 6 -0.00025195102526736 0.000515673341287784 -0.000812067933852029 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_136215402_136215423 ENSMUST00000126811.7 0 chrX:136215003+136224901 0 21 GAGCTGCGCCACCAGGAACAG 1 75.3434397851 -0.0894799996167 2.24486029765e-09 chrX_+_136215402_136215423|75.3434397851|-0.0894799996167 1.89175553000354e-09 IN ENSMUST00000126811 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_+_141576385_141576412 ENSMUST00000112931.7 0 chrX:141576041+141578671 0 27 GGACCTCCTGGGATCCCAGGTATGAAG 1 85.8813027605 3.14854833436 0 chrX_+_141576385_141576412|85.8813027605|3.14854833436 0 IN ENSMUST00000112931 Annotated NA Included I1 1 1.9351671482833e-24 -6.41391702649705e-25 1.17783966123329e-23 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_141664675_141664684 ENSMUST00000130732.1 160 chrX:141656870+141666841 160 9 GTTTTCAAG 1 85.0084329766 2.62423077226 0.000148374755651 chrX_+_141664675_141664684|85.0084329766|2.62423077226 3.07005724471399e-05 IN ENSMUST00000130732 Annotated NA Muscular M1 22 -0.00474278725330464 -0.0666621629463795 0.00206338712889968 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_143628949_143628960 ENSMUST00000134402.7 7 chrX:143518763+143693286,chrX:143528699+143693286 5,2 11 TGTGACGTCAG 1 82.9945934968 0.206799997327 0.000153257873633 chrX_+_143628949_143628960|82.9945934968|0.206799997327 4.21784647559598e-05 IN ENSMUST00000134402 Novel NA Excluded E1 6 2.09591182567578e-05 -9.57908881003948e-05 -4.82229010014626e-05 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_143642659_143642678 ENSMUST00000033640.13 106 chrX:143518763+143693286,chrX:143528699+143693286 11,95 19 AGCATGACAGAGTTGCACA 1 74.4671518567 0.328521739691 2.33859509535e-09 chrX_+_143642659_143642678|74.4671518567|0.328521739691 2.08459949302409e-09 IN ENSMUST00000033640 Novel NA Excluded E1 6 -0.000996187613611117 0.0027703410130656 0.0064101619125095 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_152166933_152166963 ENSMUST00000168786.7 0 chrX:152145179+152202907 0 30 ATCTGATGGTGAGAATTCCAGAACAGTCAG 1 89.0526502306 2.10620589423 0 chrX_+_152166933_152166963|89.0526502306|2.10620589423 0 IN ENSMUST00000168786 Annotated NA Included I1 1 -3.9744437082994e-06 3.49293905829687e-05 7.42797405333766e-06 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_152387046_152387058 ENSMUST00000145515.7 2 chrX:152385752+152416290 2 12 TGTTACCTGTAT 1 68.8884985069 0.153375004418 7.10643165558e-06 chrX_+_152387046_152387058|68.8884985069|0.153375004418 7.07494928608998e-06 IN ENSMUST00000145515 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_+_155264156_155264180 ENSMUST00000026324.9 30 chrX:155262674+155269658 30 24 GACCCTTGCTGTCAGTTGAACAAG 1 86.1181905255 0.259428574038 0 chrX_+_155264156_155264180|86.1181905255|0.259428574038 0 IN ENSMUST00000026324 Novel NA Excluded E1 6 -0.000186228083155823 0.000189870391550783 -0.000736561184045456 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_159284569_159284590 ENSMUST00000112493.7 47 chrX:159256188+159285265,chrX:159279203+159285265 1,46 21 GTTCATCGTTTTTTCTTACAG 1 80.780326459 1.6373999837 5.36193311973e-12 chrX_+_159284569_159284590|80.780326459|1.6373999837 2.15039097639647e-12 IN ENSMUST00000112493 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_+_159591331_159591357 ENSMUST00000112464.7 379 chrX:159575097+159592070 379 26 TTTTAATGTAAGAGCCTAGTTAAAAG 1 88.2621957062 1.80043331198 0 chrX_+_159591331_159591357|88.2621957062|1.80043331198 0 IN ENSMUST00000112464 Novel NA Neuronal N1 18 0.0527035144325537 0.0272856809876106 0.0259134232684577 TRUE TRUE TRUE 13.5 1 FALSE FALSE FALSE chrX_+_160004162_160004186 ENSMUST00000033665.8 0 chrX:160002044+160040989 0 24 GATATGGTCACTCAAAAAAACACA 1 87.3065653957 2.71692854924 1.38260958238e-10 chrX_+_160004162_160004186|87.3065653957|2.71692854924 2.3065216403495e-11 IN ENSMUST00000033665 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_+_160582966_160582996 ENSMUST00000112377.7 0 chrX:160581279+160584463 0 30 ATGAATAGGCGAGCTAGTGCTGATGAGCAG 1 85.4624247011 2.28458821813 0 chrX_+_160582966_160582996|85.4624247011|2.28458821813 0 IN ENSMUST00000112377 Annotated NA Included I1 1 -3.1332736646068e-64 -1.46388153175075e-65 5.61219544785301e-65 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_162939839_162939845 ENSMUST00000101095.8 13 chrX:162936805+162941646 13 6 TTAAAG 1 85.900844879 0.260399998724 0.00459660594077 chrX_+_162939839_162939845|85.900844879|0.260399998724 0.000861310026049722 IN ENSMUST00000101095 Novel NA Excluded E1 6 0.00020709745259969 5.97068506806285e-06 0.000548173242536691 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_162940508_162940516 ENSMUST00000101095.8 34 chrX:162936805+162941646 34 8 GATTACAG 1 79.7505672998 0.403583329637 0.000287789418877 chrX_+_162940508_162940516|79.7505672998|0.403583329637 0.000137987305991127 IN ENSMUST00000101095 Novel NA Excluded E1 6 0.000149340782365138 1.43342427184909e-05 0.00035524412566849 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_163931362_163931371 ENSMUST00000140845.1 2978 chrX:163917843+163932132,chrX:163921000+163932132 2784,194 9 GATGCAAAA 1 79.3620727462 4.1184616364 0.00016567228738 chrX_+_163931362_163931371|79.3620727462|4.1184616364 8.47937467254312e-05 IN ENSMUST00000140845 Annotated NA Neuronal N1 18 0.0839338349280419 0.0551033260271896 -0.0444691952214081 TRUE TRUE TRUE 10.5 1 12.5 1 FALSE FALSE TRUE chrX_+_16631527_16631541 ENSMUST00000026013.5 4 chrX:16619913+16634181 4 14 TGAAGGAATTACAG 1 78.4611672728 0.0868333371149 2.07364770466e-07 chrX_+_16631527_16631541|78.4611672728|0.0868333371149 1.22476781605485e-07 IN ENSMUST00000026013 Novel NA Excluded E1 6 0.000306569248884685 -2.57110864603671e-05 0.000345478573526872 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_20853559_20853587 ENSMUST00000136451.7 0 chrX:20853459+20853676 0 28 TTTACTGCTCAGAGCTTCAGCACCGATG 1 80.4730042033 1.60265625233 0 chrX_+_20853559_20853587|80.4730042033|1.60265625233 0 IN ENSMUST00000136451 Annotated NA Included I1 1 -3.36772239854635e-119 -6.29485587669614e-120 -6.60754128342577e-119 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_36075916_36075934 ENSMUST00000033419.12 765 chrX:36069986+36076098 765 18 CTGTGAAGACTAAAGCCG 1 76.7229200013 2.81463629109 3.46176420862e-10 chrX_+_36075916_36075934|76.7229200013|2.81463629109 2.56998311520817e-10 IN ENSMUST00000033419 Annotated NA Neuronal N1 18 0.071621572599243 0.0390847473847048 -0.00861667563617749 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE FALSE FALSE chrX_+_36875166_36875192 ENSMUST00000016452.10 0 chrX:36874791+36881656,chrX:36874791+36882598 0 26 GCCCGAAGGGACCCCGTTTGAGGATG 1 84.3510789235 4.52866661648 1.51767487466e-12 chrX_+_36875166_36875192|84.3510789235|4.52866661648 3.41726646979623e-13 IN ENSMUST00000016452 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_42151060_42151088 ENSMUST00000069619.13 3 chrX:42150834+42201854 3 28 GCACGAACTGAGCTGATCCTTGCCCCAG 1 83.3436585463 2.36437501572 0 chrX_+_42151060_42151088|83.3436585463|2.36437501572 0 IN ENSMUST00000069619 Novel Alt5 Excluded E2 3 -0.00161532953954726 0.00275720939682987 -0.00886157358525743 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_47956209_47956233 ENSMUST00000001202.14 0 chrX:47948360+47960452 0 24 GAAGAAGACAGCTACCTAGAAAAG 1 83.8646320904 5.28678568346 4.2859937821e-11 chrX_+_47956209_47956233|83.8646320904|5.28678568346 1.03316244448592e-11 IN ENSMUST00000001202 Annotated NA Included I1 1 -1.68751708949842e-18 1.79847034039881e-17 5.81439452860687e-18 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_53012276_53012294 ENSMUST00000026723.8 0 chrX:53008718+53016346 0 18 AATGTCTTGATTGTTGAA 1 84.9486672396 4.15463627265 1.10681861121e-07 chrX_+_53012276_53012294|84.9486672396|4.15463627265 2.30691742375555e-08 IN ENSMUST00000026723 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_60004407_60004432 ENSMUST00000033477.4 0 chrX:60004000+60010000 0 25 ACTGAATTTTGGAAGCAGTATGTTG 1 87.9402341249 3.0191723635 5.30331334403e-12 chrX_+_60004407_60004432|87.9402341249|3.0191723635 8.5398355054167e-13 IN ENSMUST00000033477 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_+_66653466_66653482 ENSMUST00000166241.1 1 chrX:66653371+66653861 1 16 TTTAAAAAAAAAAAAA 1 80.4633367242 0.276600007038 4.27462509833e-10 chrX_+_66653466_66653482|80.4633367242|0.276600007038 1.81215042971417e-10 IN ENSMUST00000166241 Novel NA Excluded E3 2 -0.00474555988795333 -0.00800627347388513 0.0197984335596903 TRUE TRUE TRUE FALSE FALSE FALSE chrX_+_71376886_71376910 ENSMUST00000015358.7 63 chrX:71369904+71379013,chrX:71369904+71383199 24,39 24 GTTTTCAGGAGGCCTGATACCAGG 1 83.8735399819 3.62060707673 0 chrX_+_71376886_71376910|83.8735399819|3.62060707673 0 IN ENSMUST00000015358 Annotated NA Excluded E4 11 -0.0034693035306949 -0.0760620810294831 0.0868843442502555 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_71377603_71377630 ENSMUST00000130909.7 0 chrX:71369904+71383199,chrX:71376910+71383199,chrX:71369904+71379013,chrX:71376910+71379013 0 27 AATATTCATAAAGCAAGACAAAGATTG 1 80.199103804 1.22667742328 0 chrX_+_71377603_71377630|80.199103804|1.22667742328 0 IN ENSMUST00000130909 Annotated NA Muscular M1 22 -0.00344245626261998 -0.0769591030354077 -0.00161000374428385 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_73776460_73776486 ENSMUST00000002081.5 0 chrX:73776363+73776969 0 26 TCAGCACTGCCCCCCAGGAGGTCTTG 1 80.2299016303 2.32559998433 1.27897692437e-13 chrX_+_73776460_73776486|80.2299016303|2.32559998433 5.65103519534205e-14 IN ENSMUST00000002081 Annotated NA Included I1 1 -3.72944793422136e-08 3.80168449999828e-09 4.13696201931329e-08 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_75100989_75101000 ENSMUST00000131155.7 0 chrX:75100559+75102421,chrX:75100559+75104339 0 11 GAATCTTTTGG 1 78.844931667 5.34693339467 0.000440261804453 chrX_+_75100989_75101000|78.844931667|5.34693339467 0.000245040667907204 IN ENSMUST00000131155 Annotated Alt3 Excluded E1 6 -0.000320228325030499 0.000158428124660512 -0.000557208374179047 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_75417576_75417593 ENSMUST00000033544.13 0 chrX:75416841+75418410,chrX:75416841+75422778 0 17 TTGAATGATGACATAAG 1 85.5930392493 1.4997619057 9.01054549862e-08 chrX_+_75417576_75417593|85.5930392493|1.4997619057 1.74342921210879e-08 IN ENSMUST00000033544 Annotated Alt5 Included I2 10 0.00141024950875115 9.70120111269048e-05 0.00373635484980751 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_75438931_75438960 ENSMUST00000033544.13 168 chrX:75437991+75447155 168 29 GATGGAACCCAGGGCCTCATTAATACTAG 1 77.3491654877 0.0426363674077 0 chrX_+_75438931_75438960|77.3491654877|0.0426363674077 0 IN ENSMUST00000033544 Novel NA Excluded E1 6 0.00240932925192966 0.00111349153464512 6.26994603611235e-05 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_75521784_75521793 ENSMUST00000114070.9 158 chrX:75521429+75523259 158 9 AAGGAGTTT 1 74.6762456193 0.371153838359 2.70750435554e-05 chrX_+_75521784_75521793|74.6762456193|0.371153838359 2.3850286070215e-05 IN ENSMUST00000114070 Novel NA Excluded E1 6 0.000410509717131927 0.000237678569502931 -0.000217288913860086 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_75522624_75522650 ENSMUST00000114070.9 55 chrX:75521429+75523259 55 26 ATGACCTGTCTATTGGAGAAAGTGGG 1 74.9727955411 0.268566668969 0 chrX_+_75522624_75522650|74.9727955411|0.268566668969 0 IN ENSMUST00000114070 Novel NA Excluded E1 6 0.000307077180195443 0.000300527157577853 0.000258995623955033 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_7724186_7724197 ENSMUST00000208524.1 6 chrX:7724098+7725930,chrX:7724098+7726197 3,3 11 ACCACGAGCAG 1 82.970666486 4.11993331114 1.69221168711e-06 chrX_+_7724186_7724197|82.970666486|4.11993331114 4.67496594769301e-07 IN ENSMUST00000208524 Novel Alt3 Excluded E1 6 0.000543026651079597 0.00015387005707946 0.00172805625091962 TRUE FALSE FALSE FALSE FALSE FALSE chrX_+_7727810_7727825 ENSMUST00000207461.1 4 chrX:7727492+7729715 4 15 AGAGGCCTTTGACGT 1 60.7241742877 4.33100000181 8.01810529083e-09 chrX_+_7727810_7727825|60.7241742877|4.33100000181 8.01806121497606e-09 IN ENSMUST00000207461 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_+_7794259_7794286 ENSMUST00000136930.7 10 chrX:7792337+7799289 10 27 GCACTAAGCAAGAGCAAGAAAGCTCAG 1 86.3192395644 3.9322256917 0 chrX_+_7794259_7794286|86.3192395644|3.9322256917 0 IN ENSMUST00000136930 Annotated NA Excluded E4 11 -0.00865429208177674 -0.00727012677814472 0.0453741112673593 TRUE FALSE TRUE FALSE FALSE FALSE chrX_-_103591868_103591889 ENSMUST00000145803.7 2 chrX:103572561-103595930 2 21 CCCAGGCCCTCCCACCGAGAA 1 73.5984943316 -0.0122800004482 2.07336370295e-11 chrX_-_103591868_103591889|73.5984943316|-0.0122800004482 1.92359461692604e-11 IN ENSMUST00000145803 Novel NA Excluded E3 2 0.00432029161652846 -0.0158437365813505 0.0358312357163529 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_104632583_104632610 ENSMUST00000042070.5 0 chrX:104598186-104670663 0 27 TGACTGTTTTGAGTCCAGCGGAAAAAG 1 93.1384721716 1.84209680786 0 chrX_-_104632583_104632610|93.1384721716|1.84209680786 0 IN ENSMUST00000042070 Annotated NA Included I1 1 9.73662320303577e-57 8.47187834603609e-57 2.3255972169153e-57 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_105829972_105829992 ENSMUST00000113573.7 11 chrX:105826254-105830847 11 20 TACCTCTGTGGAGTAGACAG 1 83.8941869552 0.756291670337 1.62323487984e-11 chrX_-_105829972_105829992|83.8941869552|0.756291670337 3.89621668261952e-12 IN ENSMUST00000113573 Missing in GENCODE NA Excluded E1 6 -3.55586399674591e-05 0.000614315265399607 -0.000567127128900756 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_108833676_108833706 ENSMUST00000150434.7 0 chrX:108833273-108833907 0 30 GTGCTAGTGCAAGAGCTCGAAGAGCATCAG 1 85.9542922278 3.14782347267 0 chrX_-_108833676_108833706|85.9542922278|3.14782347267 0 IN ENSMUST00000150434 Annotated NA Included I1 1 -9.73350755413073e-16 6.53878999534036e-15 2.53903822313645e-15 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_112657451_112657479 ENSMUST00000039887.3 0 chrX:112656163-112661750 0 28 CAAACAAGATTTTGAGTCCACAGATACA 1 81.7561203688 1.64218749292 0 chrX_-_112657451_112657479|81.7561203688|1.64218749292 0 IN ENSMUST00000039887 Annotated NA Included I1 1 6.27211435737552e-06 -0.000187711787413529 0.000161703408391845 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_12756428_12756455 ENSMUST00000096495.10 0 chrX:12754212-12761466 0 27 ATTGCCAAGGAAATCTGATGTGGAAAG 1 91.8179981047 3.28283865467 0 chrX_-_12756428_12756455|91.8179981047|3.28283865467 0 IN ENSMUST00000096495 Annotated NA Included I1 1 8.0003776132896e-87 1.85019437877632e-88 2.71958737945204e-87 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_133897818_133897835 ENSMUST00000087557.11 342 chrX:133897312-133898207 342 17 AGGGGAGTTTTTCACAG 1 81.2214051936 1.15471428207 1.98724592337e-10 chrX_-_133897818_133897835|81.2214051936|1.15471428207 7.37695460273358e-11 IN ENSMUST00000087557 Novel NA Excluded E1 6 0.0040088166292138 0.00148908434718995 0.00318032170996786 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_135592265_135592295 ENSMUST00000150900.7 26 chrX:135589470-135593812 26 30 GAACAACTAATGCCTGGCAAAGCCCCATGG 1 83.1262438463 0.0568529459483 0 chrX_-_135592265_135592295|83.1262438463|0.0568529459483 0 IN ENSMUST00000150900 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_-_13596685_13596694 ENSMUST00000156096.7 32 chrX:13586965-13600356 32 9 CAGCAGAAA 1 73.852783559 5.22330765541 0.000199327867497 chrX_-_13596685_13596694|73.852783559|5.22330765541 0.000183038285728854 IN ENSMUST00000156096 Missing in GENCODE NA Neuronal N6 15 0.0141430602182664 0.00448297941588996 0.00506655152122367 TRUE TRUE TRUE 12.5 1 FALSE FALSE FALSE chrX_-_13596685_13596703 ENSMUST00000156096.7 1098 chrX:13586965-13600356 1098 18 GACTTCTAGCAGCAGAAA 1 80.3693204898 5.39763632146 7.5993966675e-10 chrX_-_13596685_13596703|80.3693204898|5.39763632146 3.27491478380182e-10 IN ENSMUST00000156096 Annotated NA Neuronal N2 8 0.0649475809526086 -0.0175143383021817 -0.0322158019555567 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE FALSE FALSE chrX_-_147482111_147482139 ENSMUST00000152838.7 3 chrX:147481672-147484753,chrX:147481672-147488233 1,2 28 AATCTAGGCTGGTGAGCTACTTCACTGG 1 82.4372978526 0.13046874851 0 chrX_-_147482111_147482139|82.4372978526|0.13046874851 0 IN ENSMUST00000152838 Novel NA Excluded E1 6 -0.000492511642952059 0.000365883047005301 0.00173799733110928 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_155214830_155214858 ENSMUST00000026318.14 69 chrX:155214134-155215120,chrX:155214134-155215600 50,19 28 GAGACGGCTAAAAGGGGAAGTTGTTTGG 1 75.4965312222 0.644124997838 0 chrX_-_155214830_155214858|75.4965312222|0.644124997838 0 IN ENSMUST00000026318 Novel NA Excluded E1 6 -7.58344888994027e-06 4.06282032250959e-05 -2.39027224155494e-05 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_166462314_166462342 ENSMUST00000112091.8 0 chrX:166459009-166465093,chrX:166458343-166479539,chrX:166458343-166475280 0 28 ATAATGATGCTTGAACTGAACTACTAAG 1 90.0296525753 0.931843753962 0 chrX_-_166462314_166462342|90.0296525753|0.931843753962 0 IN ENSMUST00000112091 Annotated NA Included I1 1 0 0 0 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_166465093_166465122 ENSMUST00000049435.14 0 chrX:166462342-166475280,chrX:166458343-166479539,chrX:166458343-166475280,chrX:166462342-166479539 0 29 GTGCTTCTCTGCCATTTGGTATTCCTCAG 1 84.6647195673 0 0 chrX_-_166465093_166465122|84.6647195673|0 0 IN ENSMUST00000049435 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_-_21060502_21060523 ENSMUST00000133186.1 0 chrX:21036772-21061893,chrX:21036772-21061942 0 21 CAGGAAATGGCCAAACCCCAG 1 80.6093847123 1.01468001544 5.70616975892e-09 chrX_-_21060502_21060523|80.6093847123|1.01468001544 2.35802577464028e-09 IN ENSMUST00000133186 Annotated Alt5 Excluded E4 11 0.00452638508791747 0.00621376594086267 -0.00546698463361414 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_21060502_21060528 ENSMUST00000115333.8 0 chrX:21036772-21061893,chrX:21036772-21061942 0 26 AAAAGCAGGAAATGGCCAAACCCCAG 1 90.5203807205 1.03726668271 5.57132118217e-12 chrX_-_21060502_21060528|90.5203807205|1.03726668271 8.70858940515973e-13 IN ENSMUST00000115333 Annotated Alt5 Other O1 4 0.00106604060625614 0.0135927118762478 -0.00354669209599445 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_23359650_23359679 ENSMUST00000115313.7 45 chrX:23315201-23361493 45 29 CACTGTTCAAGGAACACTTTAAATATCAG 1 82.3973159211 0.342515148872 0 chrX_-_23359650_23359679|82.3973159211|0.342515148872 0 IN ENSMUST00000115313 Missing in GENCODE NA Excluded E2 3 0.00285279119779821 -4.31902934031735e-05 0.00556813571507867 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_37102767_37102774 ENSMUST00000076265.12 154 chrX:37102137-37104428 154 7 GACAGAG 1 81.2448833572 0.309363642199 0.000543446704471 chrX_-_37102767_37102774|81.2448833572|0.309363642199 0.000200908880776396 IN ENSMUST00000076265 Novel NA Excluded E1 6 -0.000278848822065924 3.74113975283353e-05 5.38163897401751e-05 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_42648393_42648414 ENSMUST00000115058.7 409 chrX:42642808-42657456 409 21 AAACAGAGATACCAGACATAG 1 80.1636793984 4.05004004002 1.29878330313e-11 chrX_-_42648393_42648414|80.1636793984|4.05004004002 5.80069325906152e-12 IN ENSMUST00000115058 Annotated NA Included I1 1 -0.000281651864657916 0.00149620296484503 5.21106871768977e-05 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_42727336_42727360 ENSMUST00000115058.7 0 chrX:42725493-42729552 0 24 CTCACTACTTAGATGCTGTTCGAG 1 86.9984490256 3.22467860313 1.43209888392e-11 chrX_-_42727336_42727360|86.9984490256|3.22467860313 2.43993714121871e-12 IN ENSMUST00000115058 Annotated NA Included I1 1 1.16757575110886e-05 -5.44653504144447e-05 -2.44327068943624e-05 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_48505046_48505071 ENSMUST00000143466.7 17 chrX:48504952-48513235 17 25 AACAGTGAACATCATGCAGCCCAAG 1 77.4741867086 0.107965524397 0 chrX_-_48505046_48505071|77.4741867086|0.107965524397 0 IN ENSMUST00000143466 Novel NA Excluded E1 6 0.0014789890802778 0.000419179610003128 0.0024021591310942 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_49795122_49795149 ENSMUST00000033442.13 0 chrX:49794773-49795278 0 27 GGCTCAATCCGGGTATGACTTCACTGG 1 89.2117493155 0.659387098851 0 chrX_-_49795122_49795149|89.2117493155|0.659387098851 0 IN ENSMUST00000033442 Annotated Alt3 Included I2 10 -0.000273360355491254 -0.00260888018712517 -0.00706374527551211 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_53056141_53056164 ENSMUST00000155622.7 0 chrX:53055490-53056657 0 23 TATTGGAAAAGTTTGGCTGGAAG 1 88.8460078646 0.356592592473 1.62003743753e-11 chrX_-_53056141_53056164|88.8460078646|0.356592592473 2.52775578246656e-12 IN ENSMUST00000155622 Annotated Alt3 Excluded E4 11 -0.00156834883497244 -0.00306845167217938 -0.0275132779923289 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_57241805_57241826 ENSMUST00000114735.8 291 chrX:57240687-57243389,chrX:57240687-57244604 250,41 21 AGGATGTCTTATATCTTAAAG 1 83.6175244189 5.55624002397 2.37765362954e-12 chrX_-_57241805_57241826|83.6175244189|5.55624002397 5.94413407384309e-13 IN ENSMUST00000114735 Annotated NA Included I3 5 -0.00645886584474853 -0.0149423933475496 0.0433221038989426 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_59452172_59452197 ENSMUST00000124402.1 11 chrX:59250966-59567139 11 25 GGACCCAGACTCTGATACCTGCTAG 1 78.118006291 -0.536551727496 0 chrX_-_59452172_59452197|78.118006291|-0.536551727496 0 IN ENSMUST00000124402 Novel NA Excluded E1 6 -0.000869861893976152 0.000384271016574137 0.000308097276052771 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_6030917_6030941 ENSMUST00000181123.1 11 chrX:6027287-6092004 11 24 AGCCAGTATACTGGAGAACATGTG 1 80.2253441044 None 0 chrX_-_6030917_6030941|80.2253441044|None 0 IN ENSMUST00000181123 Novel NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_-_71425414_71425432 ENSMUST00000080035.10 313 chrX:71424089-71429046 313 18 ATGCAGCAGAAGGTCCAG 1 85.1339375715 1.58449997685 2.80522272078e-10 chrX_-_71425414_71425432|85.1339375715|1.58449997685 5.71757086120783e-11 IN ENSMUST00000080035 Missing in GENCODE NA Excluded E1 6 0.00342701140048184 -0.00444520188729395 0.00715348054202195 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_73782297_73782309 ENSMUST00000140944.7 193 chrX:73782103-73782674 193 12 CAACAAACAATT 1 79.2440604476 2.20762502169 1.29220998901e-07 chrX_-_73782297_73782309|79.2440604476|2.20762502169 6.74378545229004e-08 IN ENSMUST00000140944 Annotated NA Neuro-Muscular NM5 7 0.0268517210827272 -0.0204491052694577 0.00837307541891764 TRUE TRUE TRUE 12.5 1 12.5 1 TRUE TRUE TRUE chrX_-_73855651_73855663 ENSMUST00000114430.7 2983 chrX:73855266-73855758 2983 12 GTCCCTGGAGAG 1 81.9669404669 3.15987496637 1.10827380273e-07 chrX_-_73855651_73855663|81.9669404669|3.15987496637 3.61569726381461e-08 IN ENSMUST00000114430 Annotated NA Neuro-Muscular NM5 7 0.0452427688482795 -0.0828315328136071 -0.0685631754032912 TRUE TRUE TRUE 14.5 1 14.5 1 FALSE FALSE FALSE chrX_-_73856256_73856280 ENSMUST00000124560.2 1 chrX:73855831-73856631 1 24 GCCCTGTGCGAGTTTCTACTACAG 1 82.0019850787 0.313214294155 0 chrX_-_73856256_73856280|82.0019850787|0.313214294155 0 IN ENSMUST00000124560 Novel Alt3 Excluded E2 3 -0.000332822019162228 0.0029559367036131 0.00147990754263744 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_73867021_73867036 ENSMUST00000066576.11 1880 chrX:73866160-73869728 1880 15 ATAAAGGACACCATG 1 82.2607282519 1.43178947348 1.29111866753e-08 chrX_-_73867021_73867036|82.2607282519|1.43178947348 4.00755495455485e-09 IN ENSMUST00000066576 Annotated NA Neuro-Muscular NM5 7 0.0482056678347949 -0.107715779500216 -0.0849514076500481 TRUE TRUE FALSE FALSE FALSE FALSE chrX_-_73899844_73899872 ENSMUST00000114405.7 0 chrX:73899643-73900098 0 28 GTAACAAGGAAAAGCAAGAGACATCTCG 1 88.2002893131 0.792593753693 0 chrX_-_73899844_73899872|88.2002893131|0.792593753693 0 IN ENSMUST00000114405 Annotated Alt5_3 Other O1 4 -0.0069114038701959 -0.0195815017110281 0.0213118994252349 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_74232966_74232990 ENSMUST00000114299.7 1256 chrX:74230753-74233148 1256 24 TGTCAATCGGAGGTCACGGGCTAG 1 81.8462005581 4.684285662 0 chrX_-_74232966_74232990|81.8462005581|4.684285662 0 IN ENSMUST00000114299 Annotated NA Neuro-Muscular NM3 19 0.017455113782771 -0.0122814619074483 -0.000818249897514085 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_74240815_74240823 ENSMUST00000144429.7 402 chrX:74240550-74241102 402 8 GGTCAACG 1 77.4106575602 1.85408331795 3.21859911578e-05 chrX_-_74240815_74240823|77.4106575602|1.85408331795 2.20191212780829e-05 IN ENSMUST00000144429 Missing in GENCODE NA Neuronal N4 13 0.0297208450860536 0.00254923672813965 0.0375393071351717 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chrX_-_74390473_74390497 ENSMUST00000114143.9 0 chrX:74387806-74390990,chrX:74387751-74392674,chrX:74387496-74390990,chrX:74387751-74390990 0 24 GCCCAGAGAACTCAGTGACTGCAG 1 88.9211725147 1.4833571549 1.12123643703e-11 chrX_-_74390473_74390497|88.9211725147|1.4833571549 1.74671388464276e-12 IN ENSMUST00000114143 Annotated NA Included I1 1 2.17880311141027e-117 -1.44508084576007e-117 -1.70180161178562e-117 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_75799716_75799743 ENSMUST00000114059.9 2548 chrX:75799490-75800501 2548 27 CTTATTGACTTCAGTAATTCAGTGAAG 1 75.4763330962 3.14335483077 0 chrX_-_75799716_75799743|75.4763330962|3.14335483077 0 IN ENSMUST00000114059 Annotated NA Neuronal N4 13 0.046571857831466 0.0146530581214612 0.0585959943461292 TRUE TRUE TRUE 13.5 1 14.5 1 FALSE FALSE FALSE chrX_-_7898422_7898433 ENSMUST00000033497.8 195 chrX:7896412-7898550 195 11 GTGTTTGCTAA 1 77.0177090609 -0.437933337688 1.97719587214e-06 chrX_-_7898422_7898433|77.0177090609|-0.437933337688 1.4194328704642e-06 IN ENSMUST00000033497 Novel NA Excluded E1 6 7.64278525638968e-05 -1.21812016803824e-05 0.000282621283943006 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_8201657_8201672 ENSMUST00000089402.9 261 chrX:8201569-8203158,chrX:8201569-8203791 202,59 15 GGGCACCATGGTAAG 1 80.1582587047 2.35168419112 5.71162672713e-09 chrX_-_8201657_8201672|80.1582587047|2.35168419112 2.55335574905757e-09 IN ENSMUST00000089402 Annotated NA Neuronal N2 8 0.0750148772251646 -0.0147151749044823 -0.0453488389184981 TRUE TRUE TRUE 11.5 1 12.5 1 FALSE TRUE FALSE chrX_-_8203025_8203043 ENSMUST00000089402.9 136 chrX:8201569-8203158 136 18 CAAGAAACGCAAAGCCAG 1 85.0678189197 2.51959088174 8.90736373549e-11 chrX_-_8203025_8203043|85.0678189197|2.51959088174 1.82986958918718e-11 IN ENSMUST00000089402 Annotated NA Neuronal N2 8 0.0622281507118179 -0.00147329538518797 -0.0495919557949308 TRUE TRUE TRUE 12.5 1 12.5 1 FALSE TRUE FALSE chrX_-_85739221_85739239 ENSMUST00000142152.1 1024 chrX:85737349-85740294 1024 18 AAAATCTCTCATAGCCTG 1 79.9278619614 4.099590968 1.6615331333e-10 chrX_-_85739221_85739239|79.9278619614|4.099590968 7.7288841993095e-11 IN ENSMUST00000142152 Annotated NA Neuronal N2 8 0.0519525241426644 0.00333094218592639 -0.0268642331575221 TRUE TRUE TRUE 12.5 1 14.5 1 FALSE FALSE FALSE chrX_-_95164676_95164699 ENSMUST00000113876.8 6 chrX:95131015-95165588,chrX:95131015-95165599 3,3 23 AGCTCTCTGAAACTCATGTAACT 1 75.1496413555 0.618703713365 0 chrX_-_95164676_95164699|75.1496413555|0.618703713365 0 IN ENSMUST00000113876 Novel NA Excluded E1 6 0.000190169268954593 -5.31892603512916e-05 0.00115925250749207 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_95164676_95164704 ENSMUST00000113876.8 72 chrX:95131015-95165588,chrX:95131015-95165599 31,41 28 GACAGAGCTCTCTGAAACTCATGTAACT 1 79.6052788993 0.527343758207 0 chrX_-_95164676_95164704|79.6052788993|0.527343758207 0 IN ENSMUST00000113876 Novel NA Excluded E1 6 2.017540488493e-05 0.00024102299325254 0.00363438231557893 TRUE FALSE FALSE FALSE FALSE FALSE chrX_-_96248213_96248235 ENSMUST00000050707.2 0 chrX:96247890-96249874 0 22 AGTATGTCTATGGAGTGAGCAG 1 87.3700945441 1.08084613601 1.11299414129e-10 chrX_-_96248213_96248235|87.3700945441|1.08084613601 1.84926518542738e-11 IN ENSMUST00000050707 Annotated NA FALSE FALSE FALSE FALSE FALSE FALSE chrX_-_98717855_98717885 ENSMUST00000033560.8 11 chrX:98714211-98726004 11 30 AGCTTTCAGATGTTCTGTCAAGCTGCTAGT 1 83.0104412572 None 0 chrX_-_98717855_98717885|83.0104412572|None 0 IN ENSMUST00000033560 Novel NA Excluded E1 6 0.000105253727874952 5.52141553159669e-05 -9.67571000863455e-05 TRUE FALSE FALSE FALSE FALSE FALSE chrX_GL456233_random_+_329061_329089 ENSMUST00000115964.2 18 chrX_GL456233_random:326350+332449 18 28 TTAAACACTGCATATGAACCTCCAGAAG 1 82.7598809146 None 0 chrX_GL456233_random_+_329061_329089|82.7598809146|None 0 IN ENSMUST00000115964 Novel NA Excluded E2 3 0.00188724232729007 -0.0158939877416186 0.00356841609909708 TRUE FALSE FALSE FALSE FALSE FALSE