BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_229E_NL63.fasta 20 sequences; 547,632 total letters Query= Corn_NL_S726 Length=20 Score E Sequences producing significant alignments: (Bits) Value KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome ... 34.4 2e-04 KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome ... 34.4 2e-04 KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome 34.4 2e-04 KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome ... 34.4 2e-04 KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome ... 34.4 2e-04 MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome ... 34.4 2e-04 MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome ... 34.4 2e-04 MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome ... 34.4 2e-04 MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome ... 34.4 2e-04 MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome ... 34.4 2e-04 KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome ... 34.4 2e-04 KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome 34.4 2e-04 KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome ... 34.4 2e-04 MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome ... 34.4 2e-04 MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome ... 34.4 2e-04 KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome ... 34.4 2e-04 MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome ... 34.4 2e-04 MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome ... 34.4 2e-04 MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome ... 34.4 2e-04 MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome ... 34.4 2e-04 Query_1 1 GTGTGCTATAGGMCCYGATG 20 KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome 16485 ............C..T.... 16504 KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome 16485 ............C..T.... 16504 KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome 16445 ............C..T.... 16464 KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome 16439 ............C..T.... 16458 KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome 16455 ............C..T.... 16474 MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome 16467 ............C..T.... 16486 MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome 16484 ............C..T.... 16503 MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome 16481 ............C..T.... 16500 MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome 16470 ............C..T.... 16489 MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome 16440 ............C..T.... 16459 KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome 16537 ............A..C.... 16556 KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome 16434 ............A..C.... 16453 KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome 16582 ............A..C.... 16601 MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome 16583 ............A..C.... 16602 MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome 16551 ............A..C.... 16570 KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome 16581 ............A..C.... 16600 MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome 16583 ............A..C.... 16602 MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome 16423 ............A..C.... 16442 MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome 16560 ............A..C.... 16579 MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome 16559 ............A..C.... 16578 Lambda K H 1.47 0.726 1.39 Gapped Lambda K H 1.47 0.726 1.39 Effective search space used: 5474320 Query= Corn_NL_A1004 Length=20 Score E Sequences producing significant alignments: (Bits) Value KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome ... 34.4 2e-04 KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome ... 34.4 2e-04 KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome 34.4 2e-04 KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome ... 34.4 2e-04 KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome ... 34.4 2e-04 MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome ... 34.4 2e-04 MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome ... 34.4 2e-04 MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome ... 34.4 2e-04 MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome ... 34.4 2e-04 MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome ... 34.4 2e-04 KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome ... 34.4 2e-04 KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome 34.4 2e-04 KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome ... 34.4 2e-04 MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome ... 34.4 2e-04 MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome ... 34.4 2e-04 KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome ... 34.4 2e-04 MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome ... 34.4 2e-04 MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome ... 34.4 2e-04 MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome ... 34.4 2e-04 MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome ... 34.4 2e-04 Query_2 1 GCWACATAATTYTGACTATT 20 KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome 16763 ..A........C........ 16744 KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome 16763 ..A........C........ 16744 KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome 16723 ..A........C........ 16704 KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome 16717 ..A........C........ 16698 KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome 16733 ..A........C........ 16714 MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome 16745 ..A........C........ 16726 MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome 16762 ..A........C........ 16743 MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome 16759 ..A........C........ 16740 MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome 16748 ..A........C........ 16729 MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome 16718 ..A........C........ 16699 KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome 16815 ..T........T........ 16796 KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome 16712 ..T........T........ 16693 KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome 16860 ..T........T........ 16841 MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome 16861 ..T........T........ 16842 MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome 16829 ..T........T........ 16810 KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome 16859 ..T........T........ 16840 MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome 16861 ..T........T........ 16842 MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome 16701 ..T........T........ 16682 MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome 16838 ..T........T........ 16819 MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome 16837 ..T........T........ 16818 Lambda K H 1.47 0.726 1.39 Gapped Lambda K H 1.47 0.726 1.39 Effective search space used: 5474320 Query= Corn_711NL_BC1 Length=26 Score E Sequences producing significant alignments: (Bits) Value KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome ... 48.5 2e-08 KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome ... 48.5 2e-08 KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome 48.5 2e-08 KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome ... 48.5 2e-08 KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome ... 48.5 2e-08 MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome ... 48.5 2e-08 MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome ... 48.5 2e-08 MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome ... 48.5 2e-08 MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome ... 48.5 2e-08 KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome ... 48.5 2e-08 KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome 48.5 2e-08 KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome ... 48.5 2e-08 MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome ... 48.5 2e-08 MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome ... 48.5 2e-08 KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome ... 48.5 2e-08 MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome ... 48.5 2e-08 MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome ... 48.5 2e-08 MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome ... 48.5 2e-08 MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome ... 48.5 2e-08 MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome ... 31.8 0.002 Query_3 3 AGATGTCCTGCTGAAATAGTTAA 25 KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome 16525 ....................... 16547 KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome 16525 ....................... 16547 KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome 16485 ....................... 16507 KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome 16479 ....................... 16501 KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome 16495 ....................... 16517 MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome 16507 ....................... 16529 MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome 16521 ....................... 16543 MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome 16510 ....................... 16532 MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome 16480 ....................... 16502 KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome 16577 ....................... 16599 KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome 16474 ....................... 16496 KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome 16622 ....................... 16644 MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome 16623 ....................... 16645 MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome 16591 ....................... 16613 KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome 16621 ....................... 16643 MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome 16623 ....................... 16645 MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome 16463 ....................... 16485 MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome 16600 ....................... 16622 MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome 16599 ....................... 16621 MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome 16524 ....A......A........... 16546 Lambda K H 1.45 0.722 1.37 Gapped Lambda K H 1.45 0.722 1.37 Effective search space used: 8211180 Database: new_229E_NL63.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 547,632 Number of sequences in database: 20 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_CA6_sequence.fasta 10 sequences; 73,942 total letters Query= CA6_VP1_S1151 Length=20 Score E Sequences producing significant alignments: (Bits) Value MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome ... 37.4 5e-06 MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome ... 37.4 5e-06 MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome ... 37.4 5e-06 MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome 37.4 5e-06 MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome 37.4 5e-06 MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome ... 37.4 5e-06 MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome ... 37.4 5e-06 LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome ... 37.4 5e-06 MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome 37.4 5e-06 MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome ... 31.2 3e-04 Query_1 1 CAATCCACAATGGTYGGTCA 20 MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome 2005 ..............C..... 2024 MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome 1919 ..............T..... 1938 MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome 1945 ..............C..... 1964 MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome 1992 ..............T..... 2011 MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome 2006 ..............C..... 2025 MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome 2006 ..............C..... 2025 MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome 1960 ..............C..... 1979 LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome 1960 ..............C..... 1979 MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome 2005 ..............C..... 2024 MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome 1904 ..............T.. 1920 Lambda K H 1.42 0.718 1.34 Gapped Lambda K H 1.42 0.718 1.34 Effective search space used: 812372 Query= CA6_VP1_A1409 Length=20 Score E Sequences producing significant alignments: (Bits) Value MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome ... 40.1 6e-07 MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome ... 40.1 6e-07 MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome ... 40.1 6e-07 MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome 40.1 6e-07 MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome ... 40.1 6e-07 MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome ... 40.1 6e-07 MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome 40.1 6e-07 MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome 32.2 1e-04 MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome ... 28.2 0.002 LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome ... 28.2 0.002 Query_2 1 CAGTCTTAACTGCTCTAAAA 20 MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome 2263 .................... 2244 MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome 2177 .................... 2158 MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome 2203 .................... 2184 MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome 2264 .................... 2245 MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome 2162 .................... 2143 MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome 2264 .................... 2245 MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome 2263 .................... 2244 MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome 2250 ..........C......... 2231 MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome 2216 .............. 2203 LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome 2216 .............. 2203 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 738420 Query= CA6_1151VP_BC2 Length=26 Score E Sequences producing significant alignments: (Bits) Value MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome ... 49.3 2e-09 MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome ... 49.3 2e-09 MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome ... 49.3 2e-09 MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome 49.3 2e-09 MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome 49.3 2e-09 MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome ... 43.2 1e-07 LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome ... 43.2 1e-07 MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome 43.2 1e-07 MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome ... 41.2 5e-07 MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome ... 33.0 1e-04 Query_3 1 ACACCACCTGGTAGTGCYCAGCCCGC 26 MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome 2122 .................T........ 2147 MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome 2036 .................T........ 2061 MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome 2062 .................T........ 2087 MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome 2109 .................T........ 2134 MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome 2123 .................T........ 2148 MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome 2080 ..............T........ 2102 LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome 2080 ..............T........ 2102 MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome 2122 .................T..... 2144 MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome 2123 ..............C..T........ 2148 MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome 2021 .....G...........T..A..... 2046 Lambda K H 1.41 0.716 1.34 Gapped Lambda K H 1.41 0.716 1.34 Effective search space used: 1181472 Database: new_CA6_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 73,942 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_CA16_sequence.fasta 10 sequences; 73,555 total letters Query= CA16_VP1_S421 Length=20 Score E Sequences producing significant alignments: (Bits) Value KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome ... 34.4 4e-05 MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome ... 34.4 4e-05 MG957117.1_Coxsackievirus_A16_strain_SH-HP-16-51,_complete_genome 34.4 4e-05 MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome ... 34.4 4e-05 MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome ... 34.4 4e-05 MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome ... 34.4 4e-05 MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome ... 32.3 2e-04 MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome 30.2 7e-04 KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome 30.2 7e-04 MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome ... 30.2 7e-04 Query_1 1 CTATACAYATACCAGGRGAA 20 KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome 1812 .......T........G... 1831 MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome 1757 .......T........G... 1776 MG957117.1_Coxsackievirus_A16_strain_SH-HP-16-51,_complete_genome 1712 .......T........A... 1731 MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome 1758 .......T........G... 1777 MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome 1768 .......C........G... 1787 MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome 1813 .......T........G... 1832 MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome 1813 .......T........G.. 1831 MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome 1813 .....C........G... 1830 KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome 1733 .....C........G... 1750 MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome 1813 .....C........A... 1830 Lambda K H 1.47 0.726 1.39 Gapped Lambda K H 1.47 0.726 1.39 Effective search space used: 808115 Query= CA16_VP1_A544 Length=20 Score E Sequences producing significant alignments: (Bits) Value MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome ... 37.4 5e-06 MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome ... 37.4 5e-06 MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome ... 37.4 5e-06 MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome 31.2 3e-04 KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome 31.2 3e-04 MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome ... 31.2 3e-04 KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome ... 29.2 0.001 MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome ... 29.2 0.001 MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome ... 29.2 0.001 Query_2 1 GACACTGGAAARCACAAGCG 20 MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome 1880 ...........A........ 1861 MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome 1881 ...........G........ 1862 MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome 1891 ...........G........ 1872 MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome 1931 ........G........ 1915 KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome 1851 ........G........ 1835 MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome 1931 ........G........ 1915 KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome 1935 ........G..A........ 1916 MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome 1936 ........G..A........ 1917 MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome 1936 ........G..A........ 1917 Lambda K H 1.42 0.718 1.34 Gapped Lambda K H 1.42 0.718 1.34 Effective search space used: 808115 Query= CA16_421VP_BC2 Length=24 Score E Sequences producing significant alignments: (Bits) Value KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome ... 42.4 2e-07 MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome 42.4 2e-07 MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome ... 42.4 2e-07 MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome ... 42.4 2e-07 KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome 42.4 2e-07 MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome ... 42.4 2e-07 MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome ... 42.4 2e-07 MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome ... 40.3 8e-07 MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome ... 31.9 3e-04 Query_3 1 TTGGAAATATGYAGRGTGGAGACC 24 KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome 1844 ...........C..A......... 1867 MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome 1843 ...........C..G......... 1866 MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome 1789 ...........T..A......... 1812 MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome 1845 ...........T..A......... 1868 KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome 1763 ...........C..G......... 1786 MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome 1843 ...........C..G......... 1866 MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome 1790 ...........C..A......... 1813 MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome 1846 ..........T..G......... 1868 MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome 1800 ...........C..A..A..... 1822 Lambda K H 1.45 0.723 1.37 Gapped Lambda K H 1.45 0.723 1.37 Effective search space used: 1101975 Database: new_CA16_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 73,555 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_EV71_sequence.fasta 10 sequences; 73,304 total letters Query= EV71_VP1_S241-A Length=20 ***** No hits found ***** Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 732040 Query= EV71_VP1_S241 Length=20 Score E Sequences producing significant alignments: (Bits) Value MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome ... 40.1 6e-07 MG207963.1_Enterovirus_A71_strain_6-4/XY/CHN/2017,_complete_genome 40.1 6e-07 MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome 40.1 6e-07 MK791153.1_Enterovirus_A71_isolate_K17245,_complete_genome 40.1 6e-07 MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome 28.2 0.002 Query_2 1 GAGCGACGCCAGTAATCCCT 20 MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome 1629 .................... 1648 MG207963.1_Enterovirus_A71_strain_6-4/XY/CHN/2017,_complete_genome 1630 .................... 1649 MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome 1630 .................... 1649 MK791153.1_Enterovirus_A71_isolate_K17245,_complete_genome 1629 .................... 1648 MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome 1613 ...........G...... 1630 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 732040 Query= EV71_VP1_A413 Length=20 Score E Sequences producing significant alignments: (Bits) Value MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome ... 37.4 5e-06 MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome 37.4 5e-06 MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome 37.4 5e-06 MG207963.1_Enterovirus_A71_strain_6-4/XY/CHN/2017,_complete_genome 29.2 0.001 MK791153.1_Enterovirus_A71_isolate_K17245,_complete_genome 29.2 0.001 MG976581.1_Enterovirus_A71_strain_USA/AK/2016-19516,_complete_genome ... 27.1 0.005 Query_3 1 GGGGTGRAAGTTTGGTAGAA 20 MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome 1801 ......G............. 1782 MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome 1802 ......G............. 1783 MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome 1783 ......A............. 1764 MG207963.1_Enterovirus_A71_strain_6-4/XY/CHN/2017,_complete_genome 1798 ..G............. 1783 MK791153.1_Enterovirus_A71_isolate_K17245,_complete_genome 1797 ..G............. 1782 MG976581.1_Enterovirus_A71_strain_USA/AK/2016-19516,_complete_genome 1779 ......G........ 1765 Lambda K H 1.42 0.718 1.34 Gapped Lambda K H 1.42 0.718 1.34 Effective search space used: 805354 Query= EV71_241VP_BC2 Length=24 Score E Sequences producing significant alignments: (Bits) Value MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome ... 42.4 2e-07 MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome 42.4 2e-07 MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome 34.0 6e-05 MH718269.1_Enterovirus_A71_strain_USA/CO/2018-23026,_complete_genome ... 31.9 3e-04 MK800119.1_Enterovirus_A71_strain_USA/2018-23124,_complete_genome 31.9 3e-04 MN515037.1_Enterovirus_A71_strain_16L,_complete_genome 31.9 3e-04 MT081373.1_Enterovirus_A71_strain_USA/2018-23296,_complete_genome 31.9 3e-04 Query_4 1 CCTGGCACAAAYCAATTYTTAACC 24 MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome 1733 ...........T.....T...... 1756 MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome 1734 ...........C.....T...... 1757 MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome 1715 ...........C.....T.. 1734 MH718269.1_Enterovirus_A71_strain_USA/CO/2018-23026,_complete_genome 1177 ...........C..... 1193 MK800119.1_Enterovirus_A71_strain_USA/2018-23124,_complete_genome 1675 ...........C..... 1691 MN515037.1_Enterovirus_A71_strain_16L,_complete_genome 1715 ...........C..... 1731 MT081373.1_Enterovirus_A71_strain_USA/2018-23296,_complete_genome 1738 ...........C..... 1754 Lambda K H 1.45 0.723 1.37 Gapped Lambda K H 1.45 0.723 1.37 Effective search space used: 1098210 Database: new_EV71_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 73,304 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 aBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_H1N1_2009_sequence.fasta 10 sequences; 17,280 total letters Query= InfA_2009H1_S61 Length=21 Score E Sequences producing significant alignments: (Bits) Value CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence ... 42.1 4e-08 CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 Query_1 1 ATGATAATACCAGATCCAGCA 21 CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence 864 ..................... 844 CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence 864 ..................... 844 CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence 865 ..................... 845 CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence 864 ..................... 844 CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence 864 ..................... 844 CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence 864 ..................... 844 CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence 864 ..................... 844 AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence 851 ..................... 831 CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence 864 ..................... 844 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 206280 Query= InfA_2009H1_A234 Length=21 Score E Sequences producing significant alignments: (Bits) Value CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence ... 42.1 4e-08 CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence ... 42.1 4e-08 Query_2 1 GTTCAAGCCGGAAATAGCAAT 21 CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence 691 ..................... 711 CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence 691 ..................... 711 CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence 692 ..................... 712 CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence 691 ..................... 711 CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence 691 ..................... 711 CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence 691 ..................... 711 CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence 691 ..................... 711 AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence 678 ..................... 698 CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence 691 ..................... 711 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 206280 Query= IA2009_61H1_BC1 Length=28 Score E Sequences producing significant alignments: (Bits) Value CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence ... 56.0 5e-12 CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence ... 56.0 5e-12 CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence ... 56.0 5e-12 CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence ... 56.0 5e-12 CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence ... 56.0 5e-12 CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence ... 56.0 5e-12 AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence ... 56.0 5e-12 CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence ... 56.0 5e-12 CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence ... 50.1 3e-10 Query_3 1 AATGCATATCTCGGTACCACTAGATTTC 28 CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence 828 ............................ 801 CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence 828 ............................ 801 CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence 829 ............................ 802 CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence 828 ............................ 801 CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence 828 ............................ 801 CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence 828 ............................ 801 AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence 815 ............................ 788 CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence 828 ............................ 801 CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence 825 ......................... 801 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 326610 Database: new_H1N1_2009_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 17,280 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_H1N1_2020_sequence.fasta 10 sequences; 17,513 total letters Query= InfA_H1_S701 Length=19 ***** No hits found ***** Lambda K H 1.42 0.718 1.35 Gapped Lambda K H 1.42 0.718 1.35 Effective search space used: 191763 Query= InfA_H1_A889 Length=19 ***** No hits found ***** Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 191763 Query= InfA_701H1_BC2 Length=26 Score E Sequences producing significant alignments: (Bits) Value 1740874|HA|A/Perth/40/2020|EPI_ISL_458151||A_/_H1N1 29.0 6e-04 1740741|HA|A/Jamaica/1678/2020|EPI_ISL_455838||A_/_H1N1 29.0 6e-04 1739805|HA|A/Human/Moscow/121/2020|EPI_ISL_451931||A_/_H1N1 29.0 6e-04 1739757|HA|A/Human/Veliky_Novgorod/84/2020|EPI_ISL_451925||A_/_H1N1 ... 29.0 6e-04 1739292|HA|A/Hawaii/26/2020|EPI_ISL_449781||A_/_H1N1 29.0 6e-04 1739214|HA|A/Washington/27/2020|EPI_ISL_449771||A_/_H1N1 29.0 6e-04 1739086|HA|A/Minnesota/22/2020|EPI_ISL_449755||A_/_H1N1 29.0 6e-04 1738508|HA|A/Romania/1200/2020|EPI_ISL_445197||A_/_H1N1 29.0 6e-04 1738131|HA|A/California/17/2020|EPI_ISL_443165||A_/_H1N1 29.0 6e-04 Query_3 8 ACATACTTTGGACA 21 1740874|HA|A/Perth/40/2020|EPI_ISL_458151||A_/_H1N1 971 .............. 958 1740741|HA|A/Jamaica/1678/2020|EPI_ISL_455838||A_/_H1N1 991 .............. 978 1739805|HA|A/Human/Moscow/121/2020|EPI_ISL_451931||A_/_H1N1 991 .............. 978 1739757|HA|A/Human/Veliky_Novgorod/84/2020|EPI_ISL_451925||A_/_H1N1 991 .............. 978 1739292|HA|A/Hawaii/26/2020|EPI_ISL_449781||A_/_H1N1 991 .............. 978 1739214|HA|A/Washington/27/2020|EPI_ISL_449771||A_/_H1N1 991 .............. 978 1739086|HA|A/Minnesota/22/2020|EPI_ISL_449755||A_/_H1N1 991 .............. 978 1738508|HA|A/Romania/1200/2020|EPI_ISL_445197||A_/_H1N1 991 .............. 978 1738131|HA|A/California/17/2020|EPI_ISL_443165||A_/_H1N1 991 .............. 978 Lambda K H 1.41 0.716 1.34 Gapped Lambda K H 1.41 0.716 1.34 Effective search space used: 296191 Database: new_H1N1_2020_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 17,513 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_H3N2_gisaid_epiflu_sequence.fasta 10 sequences; 17,150 total letters Query= InfA_H3_S1353 Length=19 Score E Sequences producing significant alignments: (Bits) Value 1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2 38.2 6e-07 1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2 38.2 6e-07 1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2 38.2 6e-07 1735618|HA|A/Italy/11872/2020|EPI_ISL_435195||A_/_H3N2 38.2 6e-07 1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2 38.2 6e-07 1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2 38.2 6e-07 1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2 38.2 6e-07 1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2 38.2 6e-07 1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2 38.2 6e-07 1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2 38.2 6e-07 Query_1 1 CATAAGGGTAACAGTTGCT 19 1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2 366 ................... 348 1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2 366 ................... 348 1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2 366 ................... 348 1735618|HA|A/Italy/11872/2020|EPI_ISL_435195||A_/_H3N2 349 ................... 331 1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2 349 ................... 331 1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2 349 ................... 331 1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2 349 ................... 331 1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2 349 ................... 331 1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2 349 ................... 331 1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2 349 ................... 331 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 187770 Query= InfA_H3_A1541 Length=19 Score E Sequences producing significant alignments: (Bits) Value 1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2 38.2 6e-07 1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2 38.2 6e-07 1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2 38.2 6e-07 1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2 38.2 6e-07 1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2 30.2 1e-04 1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2 30.2 1e-04 1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2 30.2 1e-04 1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2 30.2 1e-04 1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2 30.2 1e-04 Query_2 1 ATGCTACTGAGCTGGTTCA 19 1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2 178 ................... 196 1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2 178 ................... 196 1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2 161 ................... 179 1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2 161 ................... 179 1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2 178 ...........T....... 196 1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2 161 ...........T....... 179 1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2 161 ...........T....... 179 1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2 161 ...........T....... 179 1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2 161 ...........T....... 179 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 187770 Query= IAH3_1353L_BC1 Length=24 Score E Sequences producing significant alignments: (Bits) Value 1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2 46.1 3e-09 1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2 46.1 3e-09 1735618|HA|A/Italy/11872/2020|EPI_ISL_435195||A_/_H3N2 46.1 3e-09 1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2 46.1 3e-09 1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2 46.1 3e-09 1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2 46.1 3e-09 1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2 38.2 8e-07 1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2 38.2 8e-07 1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2 38.2 8e-07 1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2 38.2 8e-07 Query_3 2 TGAGGGTCTCCCAATAGAGCATC 24 1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2 289 ....................... 267 1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2 289 ....................... 267 1735618|HA|A/Italy/11872/2020|EPI_ISL_435195||A_/_H3N2 272 ....................... 250 1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2 272 ....................... 250 1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2 272 ....................... 250 1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2 272 ....................... 250 1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2 289 ........C.............. 267 1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2 272 ........C.............. 250 1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2 272 ........C.............. 250 1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2 272 ........C.............. 250 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 255900 Database: new_H3N2_gisaid_epiflu_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 17,150 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_H7N9_gisaid_epiflu_sequence.fasta 10 sequences; 17,043 total letters Query= InfA_H7_S171 Length=21 Score E Sequences producing significant alignments: (Bits) Value 1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9 42.1 4e-08 1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9 42.1 4e-08 1431608|HA|A/Gansu/23275/2019|EPI_ISL_353999||A_/_H7N9 42.1 4e-08 1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9 42.1 4e-08 1302537|HA|A/Guangdong/GZ8H001/2017|EPI_ISL_327792|MF455308|A_/_H7N9 ... 42.1 4e-08 1145176|HA|A/Ordos,_Inner_Mongolia/0526/2017|EPI_ISL_292347||A_/_H7N9 ... 42.1 4e-08 979597|HA|A/Shenzhen/Th0007/2017|EPI_ISL_259757||A_/_H7N9 42.1 4e-08 971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9 42.1 4e-08 971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9 42.1 4e-08 971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9 42.1 4e-08 Query_1 1 GGGTCAATCTGTATTCTATTT 21 1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9 1541 ..................... 1521 1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9 1541 ..................... 1521 1431608|HA|A/Gansu/23275/2019|EPI_ISL_353999||A_/_H7N9 1553 ..................... 1533 1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9 1562 ..................... 1542 1302537|HA|A/Guangdong/GZ8H001/2017|EPI_ISL_327792|MF455308|A_/_H7N9 1574 ..................... 1554 1145176|HA|A/Ordos,_Inner_Mongolia/0526/2017|EPI_ISL_292347||A_/_H7N9 1553 ..................... 1533 979597|HA|A/Shenzhen/Th0007/2017|EPI_ISL_259757||A_/_H7N9 1574 ..................... 1554 971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9 1541 ..................... 1521 971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9 1541 ..................... 1521 971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9 1541 ..................... 1521 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 203436 Query= InfA_H7_A309 Length=21 Score E Sequences producing significant alignments: (Bits) Value 979597|HA|A/Shenzhen/Th0007/2017|EPI_ISL_259757||A_/_H7N9 38.2 7e-07 1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9 34.2 1e-05 1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9 34.2 1e-05 1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9 34.2 1e-05 971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9 34.2 1e-05 971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9 34.2 1e-05 971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9 34.2 1e-05 1431608|HA|A/Gansu/23275/2019|EPI_ISL_353999||A_/_H7N9 30.2 2e-04 1302537|HA|A/Guangdong/GZ8H001/2017|EPI_ISL_327792|MF455308|A_/_H7N9 ... 30.2 2e-04 1145176|HA|A/Ordos,_Inner_Mongolia/0526/2017|EPI_ISL_292347||A_/_H7N9 ... 30.2 2e-04 Query_2 1 ATGCTGAAGAAGATGGCACTG 21 979597|HA|A/Shenzhen/Th0007/2017|EPI_ISL_259757||A_/_H7N9 1436 ................... 1454 1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9 1403 ..........G.......... 1423 1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9 1403 ..........G.......... 1423 1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9 1424 ..........G.......... 1444 971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9 1403 ..........G.......... 1423 971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9 1403 ..........G.......... 1423 971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9 1403 ..........G.......... 1423 1431608|HA|A/Gansu/23275/2019|EPI_ISL_353999||A_/_H7N9 1415 .............C..... 1433 1302537|HA|A/Guangdong/GZ8H001/2017|EPI_ISL_327792|MF455308|A_/_H7N9 1436 .............C..... 1454 1145176|HA|A/Ordos,_Inner_Mongolia/0526/2017|EPI_ISL_292347||A_/_H7N9 1415 .............C..... 1433 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 203436 Query= InfA_141H7_BC1 Length=26 Score E Sequences producing significant alignments: (Bits) Value 1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9 38.1 1e-06 1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9 38.1 1e-06 971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9 38.1 1e-06 971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9 38.1 1e-06 971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9 38.1 1e-06 1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9 29.7 3e-04 Query_3 1 TTGCYTCTTCCCTGTAYTTGCTGTGA 26 1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9 1516 ....C...........T..T...... 1491 1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9 1537 ....C...........T..T...... 1512 971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9 1516 ....C...........T..T...... 1491 971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9 1516 ....C...........T..T...... 1491 971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9 1516 ....C...........T..T...... 1491 1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9 1516 ....C........A..T..T...... 1491 Lambda K H 1.45 0.722 1.37 Gapped Lambda K H 1.45 0.722 1.37 Effective search space used: 305334 Database: new_H7N9_gisaid_epiflu_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 17,043 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_HMPV_sequence.fasta 10 sequences; 133,259 total letters Query= HMPV_FP_S789 Length=19 Score E Sequences producing significant alignments: (Bits) Value MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome 32.5 2e-04 KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome ... 32.5 2e-04 MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome ... 32.5 2e-04 MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome ... 32.5 2e-04 MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome ... 32.5 2e-04 MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome 32.5 2e-04 MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome 32.5 2e-04 MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome ... 32.5 2e-04 MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome ... 32.5 2e-04 MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome ... 32.5 2e-04 Query_1 2 CCTGCAGATGTHGGCATG 19 MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome 3770 ...........C...... 3753 KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome 3773 ...........C...... 3756 MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome 3781 ...........C...... 3764 MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome 3752 ...........T...... 3735 MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome 3774 ...........C...... 3757 MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome 3767 ...........T...... 3750 MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome 3770 ...........C...... 3753 MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome 3753 ...........C...... 3736 MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome 3774 ...........C...... 3757 MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome 3749 ...........T...... 3732 Lambda K H 1.48 0.733 1.40 Gapped Lambda K H 1.48 0.733 1.40 Effective search space used: 1331690 Query= HMPV_FP_A929 Length=19 Score E Sequences producing significant alignments: (Bits) Value MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome 35.4 3e-05 KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome ... 35.4 3e-05 MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome ... 35.4 3e-05 MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome ... 35.4 3e-05 MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome ... 35.4 3e-05 MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome 35.4 3e-05 MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome 35.4 3e-05 MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome ... 35.4 3e-05 MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome ... 35.4 3e-05 MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome ... 35.4 3e-05 Query_2 1 TTCAGTCARTTCAACAGAA 19 MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome 3631 ........A.......... 3649 KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome 3634 ........A.......... 3652 MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome 3642 ........A.......... 3660 MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome 3613 ........A.......... 3631 MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome 3635 ........A.......... 3653 MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome 3628 ........A.......... 3646 MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome 3631 ........A.......... 3649 MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome 3614 ........A.......... 3632 MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome 3635 ........A.......... 3653 MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome 3610 ........A.......... 3628 Lambda K H 1.42 0.718 1.35 Gapped Lambda K H 1.42 0.718 1.35 Effective search space used: 1198431 Query= HMPV_789FP_BC2 Length=26 Score E Sequences producing significant alignments: (Bits) Value MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome 47.3 1e-08 KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome ... 47.3 1e-08 MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome ... 47.3 1e-08 MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome ... 47.3 1e-08 MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome ... 47.3 1e-08 MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome 47.3 1e-08 MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome ... 47.3 1e-08 MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome ... 47.3 1e-08 MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome 43.2 2e-07 MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome ... 39.1 4e-06 Query_3 2 CATTGTCTGAAAAYTGCCGCACAAC 26 MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome 3685 .............T........... 3661 KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome 3688 .............T........... 3664 MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome 3696 .............T........... 3672 MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome 3667 .............T........... 3643 MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome 3689 .............T........... 3665 MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome 3685 .............T........... 3661 MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome 3668 .............T........... 3644 MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome 3689 .............T........... 3665 MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome 3682 ............RC........... 3658 MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome 3664 ....A........C........... 3640 Lambda K H 1.41 0.716 1.34 Gapped Lambda K H 1.41 0.716 1.34 Effective search space used: 2130544 Database: new_HMPV_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 133,259 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_HRV_sequence.fasta 10 sequences; 70,483 total letters Query= HRV_UTAC_S464 Length=20 Score E Sequences producing significant alignments: (Bits) Value KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome ... 37.4 4e-06 KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence 37.4 4e-06 MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome 37.4 4e-06 MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome 37.4 4e-06 LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome ... 37.4 4e-06 MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome 37.4 4e-06 KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds ... 29.2 0.001 MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome 29.2 0.001 Query_1 3 GACAAGGTGTGAAGAGCC 20 KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome 401 .................. 418 KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence 346 .................. 363 MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome 366 .................. 383 MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome 394 .................. 411 LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome 359 .................. 376 MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome 279 .................. 296 KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds 405 .........C........ 422 MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome 276 ....G............. 293 Lambda K H 1.42 0.718 1.34 Gapped Lambda K H 1.42 0.718 1.34 Effective search space used: 774323 Query= HRV_UT_A590 Length=20 Score E Sequences producing significant alignments: (Bits) Value KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome ... 40.1 6e-07 KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds ... 40.1 6e-07 KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence 40.1 6e-07 MF973194.1_Human_rhinovirus_A1_strain_7A2,_complete_genome 40.1 6e-07 MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome 40.1 6e-07 MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome 40.1 6e-07 MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome 40.1 6e-07 MN749144.1_Human_rhinovirus_A45_strain_12I7,_complete_genome 40.1 6e-07 LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome ... 40.1 6e-07 MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome 40.1 6e-07 Query_2 1 AAACACGGACACCCAAAGTA 20 KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome 555 .................... 536 KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds 559 .................... 540 KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence 500 .................... 481 MF973194.1_Human_rhinovirus_A1_strain_7A2,_complete_genome 384 .................... 365 MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome 430 .................... 411 MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome 520 .................... 501 MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome 547 .................... 528 MN749144.1_Human_rhinovirus_A45_strain_12I7,_complete_genome 558 .................... 539 LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome 513 .................... 494 MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome 433 .................... 414 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 703830 Query= HRV_UT_BC1 Length=25 Score E Sequences producing significant alignments: (Bits) Value KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome ... 47.3 6e-09 KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds ... 47.3 6e-09 KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence 47.3 6e-09 MF973194.1_Human_rhinovirus_A1_strain_7A2,_complete_genome 47.3 6e-09 MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome 47.3 6e-09 MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome 47.3 6e-09 LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome ... 47.3 6e-09 MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome 47.3 6e-09 MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome 45.3 2e-08 MN749144.1_Human_rhinovirus_A45_strain_12I7,_complete_genome 45.3 2e-08 Query_3 1 GTCCTCCGGCCCCTGAATGYGGCTA 25 KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome 436 ...................C..... 460 KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds 440 ...................C..... 464 KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence 381 ...................C..... 405 MF973194.1_Human_rhinovirus_A1_strain_7A2,_complete_genome 265 ...................C..... 289 MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome 311 ...................T..... 335 MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome 401 ...................T..... 425 LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome 394 ...................C..... 418 MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome 314 ...................T..... 338 MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome 430 ..................C..... 453 MN749144.1_Human_rhinovirus_A45_strain_12I7,_complete_genome 440 ..................T..... 463 Lambda K H 1.41 0.716 1.34 Gapped Lambda K H 1.41 0.716 1.34 Effective search space used: 1055745 Database: new_HRV_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 70,483 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_H7N9_gisaid_epiflu_sequence.fasta 10 sequences; 17,043 total letters Query= InfA_MP_S778-4 Length=22 ***** No hits found ***** Lambda K H 1.42 0.723 1.35 Gapped Lambda K H 1.42 0.723 1.35 Effective search space used: 237482 Query= InfA_MP_A979 Length=20 ***** No hits found ***** Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 186483 Query= InfA-778MP-BC1 Length=24 ***** No hits found ***** Lambda K H 1.41 0.717 1.34 Gapped Lambda K H 1.41 0.717 1.34 Effective search space used: 254295 Database: new_H7N9_gisaid_epiflu_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 17,043 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_InfluenzaB_gisaid_epiflu_sequence.fasta 10 sequences; 17,912 total letters Query= InfB_MP_S21 Length=20 ***** No hits found ***** Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 196042 Query= InfB_MP_A189 Length=20 ***** No hits found ***** Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 196042 Query= InfB_21MP_BC1 Length=26 ***** No hits found ***** Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 302974 Database: new_InfluenzaB_gisaid_epiflu_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 17,912 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_OC43_HKU1.fasta 20 sequences; 605,358 total letters Query= Corn_OC_S221 Length=20 Score E Sequences producing significant alignments: (Bits) Value KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome ... 34.4 3e-04 KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome ... 34.4 3e-04 KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome ... 34.4 3e-04 KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome ... 34.4 3e-04 KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome ... 34.4 3e-04 KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome ... 34.4 3e-04 KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome ... 34.4 3e-04 MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome 34.4 3e-04 MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome 34.4 3e-04 KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome ... 34.4 3e-04 MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome ... 34.4 3e-04 NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome ... 34.4 3e-04 MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome 34.4 3e-04 MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome 34.4 3e-04 MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome ... 34.4 3e-04 MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome ... 34.4 3e-04 MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome ... 34.4 3e-04 MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome ... 34.4 3e-04 MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome ... 34.4 3e-04 MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome ... 34.4 3e-04 Query_1 1 TGGAARCCTGGYTATTCTAT 20 KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome 20901 .....A.....C........ 20920 KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome 20946 .....A.....C........ 20965 KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome 20946 .....A.....C........ 20965 KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome 20796 .....A.....C........ 20815 KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome 20848 .....A.....C........ 20867 KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome 20416 .....A.....C........ 20435 KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome 20840 .....A.....T........ 20859 MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome 20766 .....A.....T........ 20785 MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome 20863 .....A.....T........ 20882 KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome 20848 .....A.....C........ 20867 MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome 20607 .....G.....T........ 20626 NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome 20609 .....G.....T........ 20628 MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome 20517 .....G.....T........ 20536 MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome 20589 .....G.....T........ 20608 MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome 20663 .....G.....T........ 20682 MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome 20571 .....G.....T........ 20590 MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome 20571 .....G.....T........ 20590 MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome 20700 .....G.....T........ 20719 MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome 20606 .....G.....T........ 20625 MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome 20571 .....G.....T........ 20590 Lambda K H 1.47 0.726 1.39 Gapped Lambda K H 1.47 0.726 1.39 Effective search space used: 6051580 Query= Corn_OC_A404 Length=20 Score E Sequences producing significant alignments: (Bits) Value KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome ... 37.4 3e-05 KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome ... 37.4 3e-05 KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome ... 37.4 3e-05 KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome ... 37.4 3e-05 KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome ... 37.4 3e-05 KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome ... 37.4 3e-05 KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome ... 37.4 3e-05 MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome 37.4 3e-05 MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome 37.4 3e-05 KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome ... 37.4 3e-05 MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome ... 37.4 3e-05 NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome ... 37.4 3e-05 MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome 37.4 3e-05 MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome 37.4 3e-05 MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome ... 37.4 3e-05 MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome ... 37.4 3e-05 MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome ... 37.4 3e-05 MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome ... 37.4 3e-05 MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome ... 37.4 3e-05 MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome ... 37.4 3e-05 Query_2 1 GCATATTAACAGGWACAGCT 20 KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome 21084 .............A...... 21065 KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome 21129 .............A...... 21110 KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome 21129 .............A...... 21110 KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome 20979 .............A...... 20960 KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome 21031 .............A...... 21012 KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome 20599 .............A...... 20580 KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome 21023 .............A...... 21004 MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome 20949 .............A...... 20930 MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome 21046 .............A...... 21027 KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome 21031 .............A...... 21012 MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome 20790 .............T...... 20771 NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome 20792 .............T...... 20773 MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome 20700 .............T...... 20681 MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome 20772 .............T...... 20753 MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome 20846 .............T...... 20827 MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome 20754 .............T...... 20735 MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome 20754 .............T...... 20735 MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome 20883 .............T...... 20864 MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome 20789 .............T...... 20770 MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome 20754 .............T...... 20735 Lambda K H 1.42 0.718 1.34 Gapped Lambda K H 1.42 0.718 1.34 Effective search space used: 5446242 Query= Corn_311OC_BC2 Length=24 Score E Sequences producing significant alignments: (Bits) Value KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome ... 42.4 1e-06 KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome ... 42.4 1e-06 KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome ... 42.4 1e-06 KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome ... 42.4 1e-06 KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome ... 42.4 1e-06 KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome ... 42.4 1e-06 KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome ... 42.4 1e-06 MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome 42.4 1e-06 MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome 42.4 1e-06 KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome ... 42.4 1e-06 MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome ... 42.4 1e-06 NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome ... 42.4 1e-06 MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome 42.4 1e-06 MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome 42.4 1e-06 MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome ... 42.4 1e-06 MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome ... 42.4 1e-06 MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome ... 42.4 1e-06 MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome ... 42.4 1e-06 MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome ... 42.4 1e-06 MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome ... 42.4 1e-06 Query_3 1 GATGAATGTTGCTAAGTAYACYCA 24 KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome 21011 ..................C..T.. 21034 KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome 21056 ..................C..T.. 21079 KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome 21056 ..................C..T.. 21079 KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome 20906 ..................C..T.. 20929 KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome 20958 ..................C..T.. 20981 KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome 20526 ..................C..T.. 20549 KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome 20950 ..................T..T.. 20973 MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome 20876 ..................T..T.. 20899 MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome 20973 ..................T..T.. 20996 KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome 20958 ..................C..T.. 20981 MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome 20717 ..................T..T.. 20740 NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome 20719 ..................T..T.. 20742 MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome 20627 ..................T..T.. 20650 MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome 20699 ..................T..T.. 20722 MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome 20773 ..................T..T.. 20796 MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome 20681 ..................T..T.. 20704 MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome 20681 ..................T..T.. 20704 MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome 20810 ..................T..T.. 20833 MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome 20716 ..................T..T.. 20739 MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome 20681 ..................T..T.. 20704 Lambda K H 1.45 0.723 1.37 Gapped Lambda K H 1.45 0.723 1.37 Effective search space used: 7866794 Database: new_OC43_HKU1.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 605,358 Number of sequences in database: 20 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_PIV_1_sequence.fasta 10 sequences; 155,118 total letters Query= PIV1_HN_S342 Length=20 Score E Sequences producing significant alignments: (Bits) Value MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome ... 40.1 1e-06 KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome ... 40.1 1e-06 KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome ... 40.1 1e-06 KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome ... 40.1 1e-06 MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome ... 40.1 1e-06 MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome ... 40.1 1e-06 KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome ... 40.1 1e-06 KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome ... 40.1 1e-06 MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome ... 40.1 1e-06 MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome 40.1 1e-06 Query_1 1 CAGAAAAAGGATGGTCAAAA 20 MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome 7827 .................... 7808 KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome 7795 .................... 7776 KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome 7845 .................... 7826 KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome 7831 .................... 7812 MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome 7772 .................... 7753 MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome 7829 .................... 7810 KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome 7795 .................... 7776 KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome 7814 .................... 7795 MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome 7857 .................... 7838 MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome 7832 .................... 7813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 1550180 Query= PIV1_HN_A545 Length=20 Score E Sequences producing significant alignments: (Bits) Value MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome ... 37.4 9e-06 KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome ... 37.4 9e-06 KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome ... 37.4 9e-06 KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome ... 37.4 9e-06 MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome ... 37.4 9e-06 MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome ... 37.4 9e-06 KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome ... 37.4 9e-06 KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome ... 37.4 9e-06 MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome ... 37.4 9e-06 MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome 37.4 9e-06 Query_2 1 TCAAYGACAACAGGAAATCA 20 MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome 7624 ....C............... 7643 KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome 7592 ....C............... 7611 KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome 7642 ....T............... 7661 KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome 7628 ....T............... 7647 MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome 7569 ....T............... 7588 MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome 7626 ....T............... 7645 KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome 7592 ....T............... 7611 KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome 7611 ....T............... 7630 MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome 7654 ....C............... 7673 MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome 7629 ....T............... 7648 Lambda K H 1.42 0.718 1.34 Gapped Lambda K H 1.42 0.718 1.34 Effective search space used: 1550180 Query= PIV1_342HN_BC1 Length=26 Score E Sequences producing significant alignments: (Bits) Value MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome ... 52.0 5e-10 KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome ... 52.0 5e-10 KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome ... 52.0 5e-10 KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome ... 52.0 5e-10 MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome ... 52.0 5e-10 MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome ... 52.0 5e-10 KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome ... 52.0 5e-10 KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome ... 52.0 5e-10 MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome ... 52.0 5e-10 MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome 52.0 5e-10 Query_3 1 ACCCCTTGTTCCTGCAGCTATTACAG 26 MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome 7673 .......................... 7648 KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome 7641 .......................... 7616 KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome 7691 .......................... 7666 KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome 7677 .......................... 7652 MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome 7618 .......................... 7593 MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome 7675 .......................... 7650 KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome 7641 .......................... 7616 KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome 7660 .......................... 7635 MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome 7703 .......................... 7678 MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome 7678 .......................... 7653 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 2480288 Database: new_PIV_1_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 155,118 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_PIV_2_sequence.fasta 10 sequences; 156,514 total letters Query= PIV2_HN_S97 Length=19 Score E Sequences producing significant alignments: (Bits) Value KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome ... 38.2 5e-06 KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome ... 38.2 5e-06 MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome ... 38.2 5e-06 MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome ... 38.2 5e-06 MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome ... 38.2 5e-06 MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome ... 38.2 5e-06 MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome ... 38.2 5e-06 MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome ... 38.2 5e-06 MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome ... 38.2 5e-06 MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome ... 36.2 2e-05 Query_1 1 ATAGGACGGTACCCATTGA 19 KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome 8124 ................... 8106 KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome 8138 ................... 8120 MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome 8143 ................... 8125 MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome 8147 ................... 8129 MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome 8146 ................... 8128 MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome 8149 ................... 8131 MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome 8149 ................... 8131 MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome 8179 ................... 8161 MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome 8126 ................... 8108 MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome 8148 .................. 8131 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 1407726 Query= PIV2_HN_A341 Length=19 Score E Sequences producing significant alignments: (Bits) Value KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome ... 35.4 3e-05 MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome ... 35.4 3e-05 MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome ... 35.4 3e-05 MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome ... 35.4 3e-05 MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome ... 35.4 3e-05 MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome ... 35.4 3e-05 MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome ... 35.4 3e-05 MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome ... 35.4 3e-05 KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome ... 29.2 0.002 MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome ... 29.2 0.002 Query_2 1 TTCAGAGTGCTRTTCTTAT 19 KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome 7897 ...........G....... 7915 MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome 7902 ...........G....... 7920 MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome 7906 ...........G....... 7924 MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome 7905 ...........G....... 7923 MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome 7908 ...........G....... 7926 MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome 7908 ...........G....... 7926 MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome 7938 ...........A....... 7956 MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome 7885 ...........G....... 7903 KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome 7883 ...........G.... 7898 MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome 7908 ...........G.... 7923 Lambda K H 1.42 0.718 1.35 Gapped Lambda K H 1.42 0.718 1.35 Effective search space used: 1407726 Query= PIV2_113HN_BC1 Length=28 Score E Sequences producing significant alignments: (Bits) Value KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome ... 56.0 4e-11 KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome ... 56.0 4e-11 MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome ... 56.0 4e-11 MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome ... 56.0 4e-11 MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome ... 56.0 4e-11 MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome ... 56.0 4e-11 MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome ... 56.0 4e-11 MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome ... 56.0 4e-11 MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome ... 56.0 4e-11 MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome ... 56.0 4e-11 Query_3 1 CAATAACATAGAGCCTACCTTCTGCACC 28 KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome 7999 ............................ 7972 KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome 8013 ............................ 7986 MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome 8018 ............................ 7991 MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome 8022 ............................ 7995 MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome 8021 ............................ 7994 MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome 8024 ............................ 7997 MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome 8024 ............................ 7997 MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome 8054 ............................ 8027 MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome 8024 ............................ 7997 MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome 8001 ............................ 7974 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 2658868 Database: new_PIV_2_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 156,514 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_PIV_3_sequence.fasta 10 sequences; 154,069 total letters Query= PIV3_HN_N46S Length=21 Score E Sequences producing significant alignments: (Bits) Value MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome ... 37.4 9e-06 MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome ... 37.4 9e-06 MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome ... 37.4 9e-06 MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome ... 37.4 9e-06 MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome ... 37.4 9e-06 MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome ... 37.4 9e-06 MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome ... 37.4 9e-06 LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome ... 37.4 9e-06 MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome ... 37.4 9e-06 KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome ... 29.2 0.003 Query_1 1 GTGTTTTCCCVGGACACCCAG 21 MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome 7832 ..........A.......... 7812 MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome 7818 ..........A.......... 7798 MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome 7855 ..........A.......... 7835 MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome 7798 ..........A.......... 7778 MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome 7828 ..........A.......... 7808 MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome 7863 ..........A.......... 7843 MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome 7839 ..........A.......... 7819 LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome 7824 ..........A.......... 7804 MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome 7811 ..........A.......... 7791 KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome 7895 .......T..A.......... 7875 Lambda K H 1.42 0.723 1.36 Gapped Lambda K H 1.42 0.723 1.36 Effective search space used: 1693659 Query= PIV3_HN_N46A Length=26 Score E Sequences producing significant alignments: (Bits) Value MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome ... 49.3 4e-09 MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome ... 49.3 4e-09 KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome ... 49.3 4e-09 MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome ... 49.3 4e-09 MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome ... 49.3 4e-09 MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome ... 43.2 2e-07 MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome ... 43.2 2e-07 LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome ... 43.2 2e-07 MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome ... 43.2 2e-07 MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome ... 41.2 1e-06 Query_2 1 GTCAAYTATGATGGCTCAATCTCAAC 26 MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome 7631 .....T.................... 7656 MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome 7617 .....C.................... 7642 KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome 7694 .....T.................... 7719 MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome 7654 .....T.................... 7679 MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome 7638 .....T.................... 7663 MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome 7597 .....T................. 7619 MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome 7627 .....T................. 7649 LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome 7623 .....T................. 7645 MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome 7610 .....T................. 7632 MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome 7662 .....T................ 7683 Lambda K H 1.41 0.716 1.34 Gapped Lambda K H 1.41 0.716 1.34 Effective search space used: 2463504 Query= PIV3_46HN_BC1 Length=26 Score E Sequences producing significant alignments: (Bits) Value MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome ... 49.3 4e-09 MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome ... 49.3 4e-09 KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome ... 49.3 4e-09 MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome ... 49.3 4e-09 MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome ... 49.3 4e-09 MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome ... 49.3 4e-09 MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome ... 49.3 4e-09 MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome ... 49.3 4e-09 LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome ... 49.3 4e-09 MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome ... 49.3 4e-09 Query_3 1 ATGTTCAAGACCTCCATACCCRAGAA 26 MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome 7780 .....................G.... 7755 MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome 7766 .....................A.... 7741 KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome 7843 .....................G.... 7818 MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome 7803 .....................A.... 7778 MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome 7746 .....................G.... 7721 MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome 7776 .....................G.... 7751 MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome 7811 .....................G.... 7786 MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome 7787 .....................G.... 7762 LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome 7772 .....................G.... 7747 MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome 7759 .....................G.... 7734 Lambda K H 1.41 0.716 1.34 Gapped Lambda K H 1.41 0.716 1.34 Effective search space used: 2463504 Database: new_PIV_3_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 154,069 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_PIV_4_sequence.fasta 10 sequences; 170,760 total letters Query= PIV4_HN_S786 Length=19 Score E Sequences producing significant alignments: (Bits) Value MN306058.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC9597/2019,_complete_genome ... 32.4 3e-04 KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome ... 32.4 3e-04 KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome ... 32.4 3e-04 MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome ... 30.3 0.001 MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome ... 30.3 0.001 MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome ... 30.3 0.001 MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome ... 30.3 0.001 MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome ... 30.3 0.001 MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome ... 30.3 0.001 Query_1 1 ACTCGACYTTRAAATAAGG 19 MN306058.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC9597/2019,_complete_genome 8190 .......C..G........ 8172 KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome 8195 .......C..G........ 8177 KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome 8185 .......C..G........ 8167 MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome 8234 ......T..A........ 8217 MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome 8233 ......T..A........ 8216 MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome 8233 ......T..A........ 8216 MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome 8191 ......T..A........ 8174 MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome 8240 ......T..A........ 8223 MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome 8235 ......T..A........ 8218 Lambda K H 1.48 0.726 1.39 Gapped Lambda K H 1.48 0.726 1.39 Effective search space used: 1535940 Query= PIV4_HN_A924 Length=19 Score E Sequences producing significant alignments: (Bits) Value MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome ... 35.4 3e-05 MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome ... 35.4 3e-05 MN306056.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9537/2019,_complete_genome ... 35.4 3e-05 KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome ... 35.4 3e-05 KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome ... 35.4 3e-05 MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome ... 35.4 3e-05 MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome ... 35.4 3e-05 MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome ... 35.4 3e-05 MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome ... 35.4 3e-05 Query_2 1 CAAACYCATTGGTGTTATA 19 MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome 8106 .....C............. 8124 MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome 8105 .....C............. 8123 MN306056.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9537/2019,_complete_genome 8075 .....C............. 8093 KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome 8066 .....T............. 8084 KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome 8056 .....T............. 8074 MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome 8105 .....C............. 8123 MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome 8063 .....C............. 8081 MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome 8112 .....C............. 8130 MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome 8107 .....C............. 8125 Lambda K H 1.42 0.718 1.35 Gapped Lambda K H 1.42 0.718 1.35 Effective search space used: 1535940 Query= PIV4_786HN_BC1 Length=26 Score E Sequences producing significant alignments: (Bits) Value MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome ... 43.4 2e-07 MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome ... 43.4 2e-07 MN306056.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9537/2019,_complete_genome ... 43.4 2e-07 KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome ... 43.4 2e-07 KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome ... 43.4 2e-07 MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome ... 43.4 2e-07 MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome ... 43.4 2e-07 MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome ... 43.4 2e-07 MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome ... 43.4 2e-07 Query_3 1 TGTAAGGTTCCTAGWGATAYATAYTG 26 MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome 8197 ..............T....C...T.. 8172 MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome 8196 ..............T....C...T.. 8171 MN306056.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9537/2019,_complete_genome 8166 ..............T....C...T.. 8141 KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome 8157 ..............A....C...T.. 8132 KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome 8147 ..............A....C...C.. 8122 MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome 8196 ..............T....C...T.. 8171 MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome 8154 ..............T....C...T.. 8129 MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome 8203 ..............T....C...T.. 8178 MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome 8198 ..............T....C...T.. 8173 Lambda K H 1.49 0.728 1.40 Gapped Lambda K H 1.49 0.728 1.40 Effective search space used: 2730560 Database: new_PIV_4_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 170,760 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: new_RSV_sequence.fasta 10 sequences; 151,983 total letters Query= RSV_FP_S481 Length=20 Score E Sequences producing significant alignments: (Bits) Value MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome ... 32.4 3e-04 MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome ... 32.4 3e-04 MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome ... 32.4 3e-04 MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome ... 32.4 3e-04 MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome ... 32.4 3e-04 MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome ... 32.4 3e-04 MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome ... 32.4 3e-04 MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome ... 32.4 3e-04 MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome ... 32.4 3e-04 MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome ... 32.4 3e-04 Query_1 1 TTTATDATYCCACGATTTTT 20 MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome 7034 .....A..T........... 7015 MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome 6979 .....A..T........... 6960 MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome 6943 .....A..T........... 6924 MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome 7040 .....A..T........... 7021 MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome 6916 .....A..T........... 6897 MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome 7018 .....G..C........... 6999 MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome 6943 .....G..C........... 6924 MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome 7006 .....G..C........... 6987 MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome 7005 .....G..C........... 6986 MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome 7010 .....G..C........... 6991 Lambda K H 1.48 0.732 1.40 Gapped Lambda K H 1.48 0.732 1.40 Effective search space used: 1670823 Query= RSV_FP_A671 Length=20 Score E Sequences producing significant alignments: (Bits) Value MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome ... 37.4 8e-06 MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome ... 37.4 8e-06 MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome ... 37.4 8e-06 MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome ... 37.4 8e-06 MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome ... 37.4 8e-06 MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome ... 37.4 8e-06 MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome ... 37.4 8e-06 MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome ... 37.4 8e-06 MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome ... 37.4 8e-06 MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome ... 37.4 8e-06 Query_2 1 ATGAACAGTTTRACATTACC 20 MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome 6844 ...........G........ 6863 MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome 6789 ...........G........ 6808 MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome 6753 ...........G........ 6772 MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome 6850 ...........G........ 6869 MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome 6726 ...........G........ 6745 MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome 6828 ...........A........ 6847 MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome 6753 ...........A........ 6772 MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome 6816 ...........A........ 6835 MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome 6815 ...........A........ 6834 MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome 6820 ...........A........ 6839 Lambda K H 1.42 0.718 1.34 Gapped Lambda K H 1.42 0.718 1.34 Effective search space used: 1518830 Query= RSV_481FP_BC1 Length=28 Score E Sequences producing significant alignments: (Bits) Value MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome ... 45.3 6e-08 MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome ... 45.3 6e-08 MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome ... 45.3 6e-08 MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome ... 45.3 6e-08 MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome ... 45.3 6e-08 MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome ... 45.3 6e-08 MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome ... 45.3 6e-08 MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome ... 45.3 6e-08 MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome ... 45.3 6e-08 MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome ... 38.9 5e-06 Query_3 1 GAGCTGCTTAYRTCTGTTTTTGADGTCA 28 MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome 6950 ..........TG...........T.... 6923 MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome 6895 ..........TG...........T.... 6868 MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome 6859 ..........TG...........T.... 6832 MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome 6956 ..........TG...........T.... 6929 MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome 6832 ..........TG...........T.... 6805 MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome 6934 ..........CA...........A.... 6907 MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome 6859 ..........CA...........A.... 6832 MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome 6921 ..........CA...........A.... 6894 MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome 6926 ..........CA...........A.... 6899 MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome 6919 .......CA...........A.... 6895 Lambda K H 1.48 0.731 1.40 Gapped Lambda K H 1.48 0.731 1.40 Effective search space used: 2733894 Database: new_RSV_sequence.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 151,983 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2 BLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: SARS-coV_2.fasta 10 sequences; 298,040 total letters Query= CoV-2-S-F Length=24 Score E Sequences producing significant alignments: (Bits) Value hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 48.1 1e-08 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 48.1 1e-08 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 48.1 1e-08 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 48.1 1e-08 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 48.1 1e-08 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 48.1 1e-08 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 48.1 1e-08 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 48.1 1e-08 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 48.1 1e-08 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 48.1 1e-08 Query_1 1 CAAATACTTCTAACCAGGTTGCTG 24 hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 23367 ........................ 23390 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 23366 ........................ 23389 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 23313 ........................ 23336 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 23320 ........................ 23343 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 23351 ........................ 23374 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 23342 ........................ 23365 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 23354 ........................ 23377 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 23342 ........................ 23365 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 23348 ........................ 23371 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 23352 ........................ 23375 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 3873090 Query= CoV-2-S-R Length=24 Score E Sequences producing significant alignments: (Bits) Value hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 48.1 1e-08 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 48.1 1e-08 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 48.1 1e-08 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 48.1 1e-08 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 48.1 1e-08 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 48.1 1e-08 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 48.1 1e-08 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 48.1 1e-08 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 48.1 1e-08 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 48.1 1e-08 Query_2 1 ACACGCCAAGTAGGAGTAAGTTGA 24 hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 23466 ........................ 23443 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 23465 ........................ 23442 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 23412 ........................ 23389 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 23419 ........................ 23396 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 23450 ........................ 23427 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 23441 ........................ 23418 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 23453 ........................ 23430 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 23441 ........................ 23418 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 23447 ........................ 23424 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 23451 ........................ 23428 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 3873090 Query= CoV-2-S-TZ Length=25 Score E Sequences producing significant alignments: (Bits) Value hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 50.1 4e-09 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 50.1 4e-09 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 50.1 4e-09 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 50.1 4e-09 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 50.1 4e-09 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 50.1 4e-09 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 50.1 4e-09 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 50.1 4e-09 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 50.1 4e-09 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 50.1 4e-09 Query_3 1 CAGAAGTCCCTGTTGCTATTCATGC 25 hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 23415 ......................... 23439 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 23414 ......................... 23438 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 23361 ......................... 23385 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 23368 ......................... 23392 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 23399 ......................... 23423 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 23390 ......................... 23414 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 23402 ......................... 23426 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 23390 ......................... 23414 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 23396 ......................... 23420 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 23400 ......................... 23424 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 4171020 Query= CoV-2-N-F Length=20 Score E Sequences producing significant alignments: (Bits) Value hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 40.1 2e-06 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 40.1 2e-06 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 40.1 2e-06 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 40.1 2e-06 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 40.1 2e-06 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 40.1 2e-06 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 40.1 2e-06 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 40.1 2e-06 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 40.1 2e-06 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 40.1 2e-06 Query_4 1 TGATTACAAACATTGGCCGC 20 hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 29161 .................... 29180 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 29160 .................... 29179 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 29107 .................... 29126 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 29114 .................... 29133 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 29145 .................... 29164 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 29136 .................... 29155 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 29148 .................... 29167 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 29136 .................... 29155 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 29142 .................... 29161 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 29146 .................... 29165 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 2681370 Query= CoV-2-N-R Length=22 Score E Sequences producing significant alignments: (Bits) Value hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 36.2 4e-05 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 36.2 4e-05 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 36.2 4e-05 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 36.2 4e-05 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 36.2 4e-05 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 36.2 4e-05 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 36.2 4e-05 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 36.2 4e-05 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 36.2 4e-05 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 36.2 4e-05 Query_5 1 ATGGCAGCTGTGTAGGTCAACC 22 hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 29283 ......C............... 29262 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 29282 ......C............... 29261 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 29229 ......C............... 29208 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 29236 ......C............... 29215 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 29267 ......C............... 29246 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 29258 ......C............... 29237 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 29270 ......C............... 29249 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 29258 ......C............... 29237 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 29264 ......C............... 29243 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 29268 ......C............... 29247 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 3277230 Query= CoV-2-N-TZ Length=25 Score E Sequences producing significant alignments: (Bits) Value hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 46.1 6e-08 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 46.1 6e-08 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 46.1 6e-08 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 46.1 6e-08 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 46.1 6e-08 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 46.1 6e-08 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 46.1 6e-08 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 46.1 6e-08 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 46.1 6e-08 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 46.1 6e-08 Query_6 2 CATTGGCATGGAAGTCACACCTT 24 hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02 29230 ....................... 29252 hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23 29229 ....................... 29251 hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06 29176 ....................... 29198 hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28 29183 ....................... 29205 hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23 29214 ....................... 29236 hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02 29205 ....................... 29227 hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21 29217 ....................... 29239 hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07 29205 ....................... 29227 hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15 29211 ....................... 29233 hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27 29215 ....................... 29237 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 4171020 Database: SARS-coV_2.fasta Posted date: Jun 9, 2020 4:38 PM Number of letters in database: 298,040 Number of sequences in database: 10 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2