"chrom","pos","ref","alt","gene","type","annot","count"
"MN908947.3",84,"C","Y","CHR_START-ORF1a","intergenic_region","",1
"MN908947.3",106,"C","T","CHR_START-ORF1a","intergenic_region","",3
"MN908947.3",204,"G","T","CHR_START-ORF1a","intergenic_region","",1
"MN908947.3",212,"T","A","CHR_START-ORF1a","intergenic_region","",1
"MN908947.3",233,"C","T","CHR_START-ORF1a","intergenic_region","",1
"MN908947.3",241,"C","T","CHR_START-ORF1a","intergenic_region","",91
"MN908947.3",313,"C","T","ORF1a","synonymous_variant","L16L",3
"MN908947.3",337,"C","T","ORF1a","synonymous_variant","R24R",1
"MN908947.3",379,"C","A","ORF1a","synonymous_variant","V38V",1
"MN908947.3",490,"T","A","ORF1a","missense_variant","D75E",14
"MN908947.3",619,"C","T","ORF1a","synonymous_variant","Y118Y",1
"MN908947.3",629,"C","T","ORF1a","missense_variant","L122F",2
"MN908947.3",676,"C","T","ORF1a","synonymous_variant","G137G",1
"MN908947.3",833,"T","C","ORF1a","missense_variant","F190L",3
"MN908947.3",1059,"C","T","ORF1a","missense_variant","T265I",60
"MN908947.3",1812,"C","T","ORF1a","missense_variant","A516V",1
"MN908947.3",1817,"A","G","ORF1a","missense_variant","K518E",1
"MN908947.3",1917,"C","T","ORF1a","missense_variant","T551I",3
"MN908947.3",2110,"C","T","ORF1a","synonymous_variant","N615N",1
"MN908947.3",2388,"C","Y","ORF1a","missense_variant","T708I",1
"MN908947.3",2416,"C","T","ORF1a","synonymous_variant","Y717Y",12
"MN908947.3",2480,"A","G","ORF1a","missense_variant","I739V",5
"MN908947.3",2558,"C","T","ORF1a","missense_variant","P765S",5
"MN908947.3",3037,"C","T","ORF1a","synonymous_variant","F924F",90
"MN908947.3",3094,"A","G","ORF1a","synonymous_variant","P943P",1
"MN908947.3",3177,"C","T","ORF1a","missense_variant","P971L",14
"MN908947.3",3602,"C","T","ORF1a","missense_variant","H1113Y",1
"MN908947.3",4113,"C","T","ORF1a","missense_variant","A1283V",2
"MN908947.3",4255,"G","A","ORF1a","synonymous_variant","P1330P",3
"MN908947.3",4504,"G","T","ORF1a","missense_variant","E1413D",1
"MN908947.3",4523,"G","A","ORF1a","missense_variant","A1420T",2
"MN908947.3",4579,"T","A","ORF1a","synonymous_variant","L1438L",1
"MN908947.3",4589,"A","C","ORF1a","missense_variant","N1442H",1
"MN908947.3",4912,"A","C","ORF1a","missense_variant","E1549D",4
"MN908947.3",5090,"C","T","ORF1a","missense_variant","P1609S",2
"MN908947.3",5284,"C","T","ORF1a","synonymous_variant","N1673N",1
"MN908947.3",5526,"C","T","ORF1a","missense_variant","T1754I",2
"MN908947.3",5826,"C","T","ORF1a","missense_variant","T1854I",1
"MN908947.3",5869,"C","T","ORF1a","synonymous_variant","Y1868Y",1
"MN908947.3",6040,"C","T","ORF1a","synonymous_variant","F1925F",12
"MN908947.3",6267,"C","T","ORF1a","missense_variant","A2001V",1
"MN908947.3",6312,"C","A","ORF1a","missense_variant","T2016K",2
"MN908947.3",6740,"C","T","ORF1a","missense_variant","R2159W",1
"MN908947.3",7936,"G","T","ORF1a","synonymous_variant","A2557A",1
"MN908947.3",8676,"G","T","ORF1a","missense_variant","S2804I",1
"MN908947.3",8683,"C","T","ORF1a","synonymous_variant","I2806I",1
"MN908947.3",8697,"C","T","ORF1a","missense_variant","A2811V",1
"MN908947.3",8782,"C","T","ORF1a","synonymous_variant","S2839S",16
"MN908947.3",8950,"C","T","ORF1a","synonymous_variant","I2895I",5
"MN908947.3",9172,"T","C","ORF1a","synonymous_variant","L2969L",4
"MN908947.3",9430,"C","T","ORF1a","synonymous_variant","I3055I",2
"MN908947.3",9510,"C","T","ORF1a","missense_variant","T3082I",1
"MN908947.3",9521,"C","Y","ORF1a","missense_variant","L3086F",1
"MN908947.3",9526,"G","T","ORF1a","missense_variant","M3087I",1
"MN908947.3",9891,"C","Y","ORF1a","missense_variant","A3209V",1
"MN908947.3",10116,"C","T","ORF1a","missense_variant","T3284I",1
"MN908947.3",10523,"G","C","ORF1a","missense_variant","V3420L",3
"MN908947.3",10697,"G","A","ORF1a","missense_variant","G3478R",1
"MN908947.3",10712,"C","T","ORF1a","missense_variant","L3483F",2
"MN908947.3",10770,"A","R","ORF1a","missense_variant","Y3502C",1
"MN908947.3",10851,"C","T","ORF1a","missense_variant","A3529V",1
"MN908947.3",10948,"A","G","ORF1a","synonymous_variant","R3561R",4
"MN908947.3",11083,"G","T","ORF1a","missense_variant","L3606F",11
"MN908947.3",11401,"G","T","ORF1a","missense_variant","M3712I",1
"MN908947.3",11455,"C","T","ORF1a","synonymous_variant","A3730A",1
"MN908947.3",11457,"T","C","ORF1a","missense_variant","I3731T",1
"MN908947.3",11916,"C","T","ORF1a","missense_variant","S3884L",3
"MN908947.3",11919,"C","T","ORF1a","missense_variant","S3885F",1
"MN908947.3",12043,"C","Y","ORF1a","synonymous_variant","D3926D",1
"MN908947.3",12119,"C","T","ORF1a","missense_variant","P3952S",3
"MN908947.3",12191,"G","K","ORF1a","missense_variant","V3976F",1
"MN908947.3",12478,"G","A","ORF1a","missense_variant","M4071I",13
"MN908947.3",13620,"C","T","ORF1b","synonymous_variant","D51D",1
"MN908947.3",13660,"A","C","ORF1b","synonymous_variant","R65R",1
"MN908947.3",13730,"C","T","ORF1b","missense_variant","A88V",3
"MN908947.3",13813,"G","T","ORF1b","missense_variant","A116S",1
"MN908947.3",14134,"C","T","ORF1b","missense_variant","P223S",1
"MN908947.3",14408,"C","T","ORF1b","missense_variant","P314L",91
"MN908947.3",14805,"C","T","ORF1b","synonymous_variant","Y446Y",5
"MN908947.3",14912,"A","G","ORF1b","missense_variant","N482S",1
"MN908947.3",15049,"C","T","ORF1b","missense_variant","P528S",1
"MN908947.3",15325,"A","G","ORF1b","missense_variant","M620V",1
"MN908947.3",15594,"G","A","ORF1b","synonymous_variant","K709K",1
"MN908947.3",15760,"G","A","ORF1b","missense_variant","G765S",2
"MN908947.3",15867,"T","W","ORF1b","synonymous_variant","P800P",1
"MN908947.3",16260,"C","T","ORF1b","synonymous_variant","C931C",1
"MN908947.3",16391,"C","Y","ORF1b","missense_variant","A975V",1
"MN908947.3",16658,"C","T","ORF1b","missense_variant","T1064I",1
"MN908947.3",17004,"C","Y","ORF1b","synonymous_variant","L1179L",1
"MN908947.3",17010,"C","A","ORF1b","synonymous_variant","I1181I",4
"MN908947.3",17304,"C","T","ORF1b","synonymous_variant","V1279V",2
"MN908947.3",17334,"G","T","ORF1b","synonymous_variant","T1289T",1
"MN908947.3",17502,"C","T","ORF1b","synonymous_variant","F1345F",1
"MN908947.3",17531,"T","C","ORF1b","missense_variant","I1355T",3
"MN908947.3",17747,"C","T","ORF1b","missense_variant","P1427L",2
"MN908947.3",17808,"G","T","ORF1b","missense_variant","K1447N",1
"MN908947.3",17858,"A","G","ORF1b","missense_variant","Y1464C",2
"MN908947.3",18060,"C","T","ORF1b","synonymous_variant","L1531L",2
"MN908947.3",18086,"C","A","ORF1b","missense_variant","T1540N",3
"MN908947.3",18318,"G","T","ORF1b","synonymous_variant","G1617G",1
"MN908947.3",18508,"C","T","ORF1b","missense_variant","L1681F",1
"MN908947.3",18703,"G","T","ORF1b","missense_variant","D1746Y",1
"MN908947.3",18736,"T","C","ORF1b","missense_variant","F1757L",14
"MN908947.3",18877,"C","T","ORF1b","synonymous_variant","L1804L",1
"MN908947.3",18898,"G","T","ORF1b","missense_variant","V1811F",1
"MN908947.3",18998,"C","T","ORF1b","missense_variant","A1844V",2
"MN908947.3",19018,"C","T","ORF1b","missense_variant","P1851S",1
"MN908947.3",19072,"G","T","ORF1b","missense_variant","D1869Y",1
"MN908947.3",19488,"C","T","ORF1b","synonymous_variant","V2007V",1
"MN908947.3",19839,"T","C","ORF1b","synonymous_variant","N2124N",1
"MN908947.3",19847,"G","A","ORF1b","missense_variant","G2127D",1
"MN908947.3",20133,"C","Y","ORF1b","synonymous_variant","A2222A",1
"MN908947.3",20755,"A","C","ORF1b","missense_variant","S2430R",2
"MN908947.3",20758,"G","R","ORF1b","missense_variant","A2431T",1
"MN908947.3",21575,"C","T","S","missense_variant","L5F",4
"MN908947.3",21772,"C","T","S","synonymous_variant","V70V",1
"MN908947.3",21958,"A","C","S","missense_variant","E132D",1
"MN908947.3",22016,"T","A","S","missense_variant","W152R",1
"MN908947.3",23086,"C","T","S","synonymous_variant","Y508Y",1
"MN908947.3",23403,"A","G","S","missense_variant","D614G",91
"MN908947.3",23453,"C","T","S","missense_variant","P631S",2
"MN908947.3",23595,"C","T","S","missense_variant","T678I",3
"MN908947.3",23677,"T","C","S","synonymous_variant","V705V",1
"MN908947.3",23863,"A","G","S","synonymous_variant","L767L",1
"MN908947.3",23929,"C","T","S","synonymous_variant","Y789Y",2
"MN908947.3",24034,"C","T","S","synonymous_variant","N824N",14
"MN908947.3",24316,"G","S","S","missense_variant","E918D",1
"MN908947.3",24382,"C","G","S","synonymous_variant","S940S",1
"MN908947.3",24694,"A","T","S","synonymous_variant","G1044G",2
"MN908947.3",25192,"A","R","S","missense_variant","I1210M",1
"MN908947.3",25429,"G","T","ORF3a","missense_variant","V13L",1
"MN908947.3",25430,"T","C","ORF3a","missense_variant","V13A",1
"MN908947.3",25442,"A","G","ORF3a","missense_variant","Q17R",1
"MN908947.3",25471,"G","S","ORF3a","missense_variant","D27H",1
"MN908947.3",25563,"G","T","ORF3a","missense_variant","Q57H",73
"MN908947.3",25726,"G","T","ORF3a","missense_variant","V112F",1
"MN908947.3",26144,"G","T","ORF3a","missense_variant","G251V",5
"MN908947.3",26209,"G","T","ORF3a","missense_variant","V273L",1
"MN908947.3",26233,"G","T","ORF3a-E","intergenic_region","",5
"MN908947.3",26690,"G","T","M","synonymous_variant","L56L",1
"MN908947.3",26729,"T","C","M","synonymous_variant","A69A",14
"MN908947.3",26730,"G","T","M","missense_variant","V70F",4
"MN908947.3",26768,"C","T","M","synonymous_variant","I82I",1
"MN908947.3",27214,"G","T","ORF6","missense_variant","V5F",1
"MN908947.3",27299,"T","C","ORF6","missense_variant","I33T",1
"MN908947.3",27384,"T","C","ORF6","synonymous_variant","D61D",1
"MN908947.3",27434,"C","T","ORF7a","missense_variant","T14I",1
"MN908947.3",27509,"C","T","ORF7a","missense_variant","T39I",1
"MN908947.3",27561,"G","T","ORF7a","synonymous_variant","L56L",1
"MN908947.3",27635,"C","T","ORF7a","missense_variant","S81L",1
"MN908947.3",27673,"C","Y","ORF7a","stop_gained","Q94*",1
"MN908947.3",27746,"G","T","ORF7a","missense_variant","R118I",1
"MN908947.3",27964,"C","T","ORF8","missense_variant","S24L",4
"MN908947.3",28077,"G","C","ORF8","missense_variant","V62L",14
"MN908947.3",28144,"T","C","ORF8","missense_variant","L84S",16
"MN908947.3",28168,"A","R","ORF8","missense_variant","E92G",1
"MN908947.3",28311,"C","T","N","missense_variant","P13L",2
"MN908947.3",28380,"G","K","N","missense_variant","R36L",1
"MN908947.3",28393,"T","C","N","synonymous_variant","R40R",1
"MN908947.3",28480,"A","T","N","synonymous_variant","G69G",1
"MN908947.3",28821,"C","A","N","missense_variant","S183Y",1
"MN908947.3",28833,"C","T","N","missense_variant","S187L",1
"MN908947.3",28881,"GGG","AAC","N","missense_variant","RG203KR",17
"MN908947.3",28896,"C","G","N","missense_variant","A208G",13
"MN908947.3",28921,"T","C","N","synonymous_variant","D216D",2
"MN908947.3",28923,"C","Y","N","missense_variant","A217V",1
"MN908947.3",29148,"T","C","N","missense_variant","I292T",1
"MN908947.3",29272,"C","T","N","synonymous_variant","Y333Y",1
"MN908947.3",29421,"C","T","N","missense_variant","P383L",1
"MN908947.3",29431,"G","A","N","synonymous_variant","Q386Q",1
"MN908947.3",29451,"C","T","N","missense_variant","T393I",5
"MN908947.3",29540,"G","A","N-ORF10","intergenic_region","",2
"MN908947.3",29614,"C","Y","ORF10","synonymous_variant","C19C",1
"MN908947.3",29700,"A","G","ORF10-CHR_END","intergenic_region","",12