Chr start stop superfamily TE nrpd1-CTL Col-0-CTL nrpd1-HS Col-0-HS nrpd1-flg22 Col-0-flg22 5 22415888 22415895 Copia ATCOPIA12 0 0 0 0 1 0 1 26730446 26730466 Copia ATCOPIA13 0 0 0 0 1 0 3 6009701 6009708 Copia ATCOPIA23 0 0 0 0 1 0 3 14201043 14201102 Copia ATCOPIA27 0 1 0 0 0 0 3 11321762 11321819 Copia ATCOPIA28 0 1 0 0 0 0 2 15822657 15822748 Copia ATCOPIA2 0 0 0 0 1 0 3 12169005 12169097 Copia ATCOPIA2 0 0 0 0 1 0 3 9848304 9848314 Copia ATCOPIA31 0 0 1 0 0 0 1 23707481 23707487 Copia ATCOPIA36 1 0 0 0 0 0 3 16673796 16673853 Copia ATCOPIA36 0 0 0 0 1 0 3 16888190 16888214 Copia ATCOPIA45 0 0 0 0 1 0 3 14196570 14196590 Copia ATCOPIA49 0 0 1 0 0 0 1 29068038 29068100 Copia ATCOPIA4 0 0 0 0 1 0 3 14202159 14202185 Copia ATCOPIA50 1 0 0 0 0 0 3 14201518 14201659 Copia ATCOPIA57 0 0 0 0 1 0 1 21318576 21318600 Copia ATCOPIA58 1 0 0 0 0 0 3 6698075 6698231 Copia ATCOPIA58 1 0 0 0 0 0 3 14199531 14199609 Copia ATCOPIA58 0 0 0 0 1 0 1 18055209 18055328 Copia ATCOPIA72 0 0 0 0 1 0 4 56179 56189 Copia ATCOPIA74 0 0 0 0 1 0 3 16692731 16692814 Copia ATCOPIA76 0 0 0 1 0 0 1 9911001 9911007 Copia ATCOPIA78 0 0 1 0 0 0 1 10596524 10596593 Copia ATCOPIA78 0 0 1 0 0 0 1 20258026 20258059 Copia ATCOPIA78 0 0 0 1 0 0 2 8568422 8568552 Copia ATCOPIA78 0 0 1 0 0 0 2 13133816 13133834 Copia ATCOPIA78 0 0 1 0 0 0 2 13354246 13354365 Copia ATCOPIA78 0 0 1 0 0 0 3 932884 932914 Copia ATCOPIA78 0 0 0 0 1 0 3 4518022 4518025 Copia ATCOPIA78 0 0 1 0 0 0 3 14199619 14199645 Copia ATCOPIA78 0 0 0 0 0 1 3 21132598 21132617 Copia ATCOPIA78 0 0 1 0 0 0 3 21897022 21897029 Copia ATCOPIA78 0 0 1 0 0 0 4 2603835 2603841 Copia ATCOPIA78 0 0 0 0 1 0 4 7957213 7957223 Copia ATCOPIA78 0 0 0 0 1 0 5 11734855 11734863 Copia ATCOPIA78 0 0 0 0 1 0 5 22839902 22839982 Copia ATCOPIA78 1 0 0 0 0 0 5 25226558 25226575 Copia ATCOPIA78 1 0 0 0 0 0 3 14201054 14201083 Copia ATCOPIA93 1 0 0 0 0 0 5 15589305 15589312 Copia ATCOPIA93 0 0 0 0 0 1 2 1854646 1854717 Copia ENDOVIR1 0 0 0 0 1 0 1 9450648 9450839 Copia META1 0 0 0 0 1 0 1 16358525 16358529 Copia META1 1 0 0 0 0 0 1 22769899 22769906 Copia META1 0 0 0 0 1 0 2 1330686 1330749 Copia META1 0 0 0 0 1 0 2 9234989 9234997 Copia META1 0 0 0 0 1 0 2 15597129 15597177 Copia META1 0 0 0 0 0 1 3 4266649 4266736 Copia META1 0 0 0 0 1 0 3 23059817 23059998 Copia META1 1 0 0 0 0 0 4 17099958 17100108 Copia META1 1 0 0 0 0 0 4 18109369 18109477 Copia META1 0 0 0 1 0 0 5 7554216 7554415 Copia META1 0 0 0 0 1 0 5 15951969 15952016 Copia META1 0 0 0 0 1 0 2 4948188 4948226 En-Spm ATENSPM2 0 0 0 0 0 1 2 3521 3600 En-Spm ATENSPM3 0 0 1 0 0 0 3 15284045 15284062 En-Spm ATENSPM3 0 0 0 0 0 1 4 3954625 3954629 En-Spm ATENSPM3 0 1 0 0 0 0 5 15698282 15698328 En-Spm ATENSPM3 0 0 0 0 1 0 1 16403169 16403175 En-Spm ATENSPM5 0 0 0 0 1 0 5 3616751 3616800 En-Spm ATENSPM5 0 0 0 0 1 0 1 7435119 7435136 Gypsy ATGP1 1 0 0 0 0 0 1 10832303 10832431 Gypsy ATGP1 0 0 0 0 1 0 1 15083908 15084077 Gypsy ATGP1 0 0 1 0 0 0 1 20027523 20027656 Gypsy ATGP1 1 0 0 0 0 0 1 22220630 22220687 Gypsy ATGP1 0 0 1 0 0 0 2 3335575 3335630 Gypsy ATGP1 0 0 0 1 0 0 2 5873070 5873074 Gypsy ATGP1 0 0 1 0 0 0 2 7190950 7191013 Gypsy ATGP1 0 0 0 0 1 0 2 8383520 8383565 Gypsy ATGP1 0 1 0 0 0 0 2 9169500 9169563 Gypsy ATGP1 0 0 1 0 0 0 2 12644205 12644350 Gypsy ATGP1 0 0 1 0 0 0 2 15659217 15659218 Gypsy ATGP1 0 0 0 0 1 0 2 16049651 16049692 Gypsy ATGP1 0 0 1 0 0 0 2 16310976 16311156 Gypsy ATGP1 0 0 0 0 0 1 3 2999310 2999392 Gypsy ATGP1 0 0 0 0 1 0 3 5646071 5646218 Gypsy ATGP1 0 1 0 0 0 0 3 5703924 5704118 Gypsy ATGP1 0 0 0 0 1 0 3 23456319 23456493 Gypsy ATGP1 0 0 1 0 0 0 4 5973079 5973105 Gypsy ATGP1 0 0 1 0 0 0 4 8650254 8650426 Gypsy ATGP1 0 0 1 0 0 0 4 12761774 12761946 Gypsy ATGP1 0 0 0 0 1 0 4 16914739 16914814 Gypsy ATGP1 0 0 0 0 0 1 5 11732079 11732265 Gypsy ATGP1 0 0 0 0 0 1 5 13532696 13532832 Gypsy ATGP1 0 0 1 0 0 0 5 22473690 22473884 Gypsy ATGP1 0 0 1 0 0 0 5 26362606 26362638 Gypsy ATGP1 0 1 0 0 0 0 1 15594149 15594156 Gypsy ATGP2 0 0 0 0 1 0 2 9971 10054 Gypsy ATGP2 0 1 0 0 0 0 2 3434343 3434360 Gypsy ATGP2 0 0 1 0 0 0 2 3483957 3483989 Gypsy ATGP2 0 0 1 0 0 0 2 19646183 19646281 Gypsy ATGP2 0 0 0 0 1 0 3 13587077 13587167 Gypsy ATGP2 0 0 1 0 0 0 4 2011899 2011905 Gypsy ATGP2 0 1 0 0 0 0 4 2340772 2340777 Gypsy ATGP2 0 0 0 0 1 0 4 16115864 16115908 Gypsy ATGP2 0 0 0 0 1 0 5 2701835 2701906 Gypsy ATGP2 1 0 0 0 0 0 5 2829569 2829735 Gypsy ATGP2 0 0 0 0 1 0 5 12895768 12895789 Gypsy ATGP2 0 0 0 0 1 0 2 3376958 3377097 Gypsy ATGP2N 1 0 0 0 0 0 4 5625031 5625083 Gypsy ATGP2N 0 1 0 0 0 0 1 12680105 12680221 Gypsy ATGP9B 0 1 0 0 0 0 3 14196883 14196939 Gypsy ATGP9B 0 0 1 0 0 0 1 12942882 12943023 Gypsy ATHILA2 0 0 1 0 0 0 2 1049292 1049326 Gypsy ATHILA2 1 0 0 0 0 0 2 67066 67099 Gypsy ATHILA3 1 0 0 0 0 0 3 11521912 11521934 Gypsy ATHILA3 1 0 0 0 0 0 3 14196571 14196597 Gypsy ATHILA3 1 0 0 0 0 0 2 1701905 1701942 Gypsy ATHILA4C 0 0 1 0 0 0 3 14201699 14201765 Gypsy ATHILA4C 0 0 1 0 0 0 4 6529668 6529813 Gypsy ATHILA4C 1 0 0 0 0 0 2 1701881 1701942 Gypsy ATHILA6A 0 0 1 0 0 0 2 15595164 15595336 Gypsy ATHILA6A 1 0 0 0 0 0 5 16051461 16051517 Gypsy ATHILA6A 1 0 0 0 0 0 1 13660367 13660436 Gypsy ATHILA6B 0 0 1 0 0 0 2 5226038 5226115 Gypsy ATHILA6B 0 0 1 0 0 0 2 5814842 5814894 Gypsy ATHILA6B 0 0 1 0 0 0 2 10491818 10491924 Gypsy ATHILA6B 0 0 1 0 0 0 5 5111499 5111631 Gypsy ATHILA6B 0 0 1 0 0 0 2 1701921 1701942 Gypsy ATHILA7 0 0 1 0 0 0 2 5238117 5238139 Gypsy ATHILA7 1 0 0 0 0 0 3 14042295 14042497 Gypsy ATHILA7 1 0 0 0 0 0 4 1618866 1618928 Gypsy ATHILA7 1 0 0 0 0 0 3 10106088 10106098 Gypsy ATHILA8A 1 0 0 0 0 0 3 19178720 19178753 Gypsy ATHILA 1 0 0 0 0 0 2 2638859 2639030 Gypsy ATLANTYS1 0 0 0 1 0 0 1 16386591 16386652 Gypsy ATLANTYS3 0 0 1 0 0 0 2 1505357 1505419 Gypsy ATLANTYS3 0 0 1 0 0 0 2 5558012 5558083 Gypsy ATLANTYS3 1 0 0 0 0 0 2 6779230 6779235 Gypsy ATLANTYS3 0 0 1 0 0 0 2 1701921 1701942 Gypsy TAT1_ATH 0 0 1 0 0 0 5 5522488 5522493 Harbinger HARBINGER 0 1 0 0 0 0 1 11210140 11210279 HAT ATHAT3 0 0 0 0 1 0 4 5395072 5395104 HAT ATHAT3 1 0 0 0 0 0 3 9163182 9163297 HAT ATHATN6 0 0 0 0 1 0 3 14196574 14196614 HAT ATHATN6 0 0 1 0 0 0 4 7904390 7904543 HAT SIMPLEHAT1 0 0 0 0 1 0 1 214011 214040 HAT SIMPLEHAT2 0 0 0 0 1 0 2 2443470 2443526 HAT SIMPLEHAT2 0 0 0 0 1 0 3 7387282 7387308 HAT TAG2 0 0 0 0 1 0 3 14202176 14202368 HAT TAG3N1 1 0 0 0 0 0 4 17574603 17574713 L1 ATLINE1_6 0 0 1 0 0 0 3 20813551 20813607 L1 ATLINEIII 0 0 1 0 0 0 3 22470161 22470328 L1 ATLINEIII 0 0 1 0 0 0 2 655687 655738 MuDR ARNOLD2 0 0 0 0 1 0 1 9236840 9236881 MuDR ARNOLDY1 0 0 0 0 0 1 1 28424479 28424489 MuDR AT9NMU1 1 0 0 0 0 0 2 12720396 12720415 MuDR AT9NMU1 0 0 0 0 1 0 3 8819220 8819275 MuDR AT9NMU1 0 0 0 0 1 0 3 13590423 13590600 MuDR AT9NMU1 0 1 0 0 0 0 4 8959133 8959150 MuDR AT9NMU1 1 0 0 0 0 0 4 14777446 14777478 MuDR AT9NMU1 0 0 0 0 1 0 4 16851452 16851512 MuDR AT9NMU1 0 0 0 0 1 0 4 18189032 18189129 MuDR AT9NMU1 0 0 0 0 1 0 4 7560806 7560874 MuDR ATDNA2T9C 0 1 0 0 0 0 5 11018951 11018961 MuDR ATDNAI27T9B 0 0 0 0 0 1 3 8343664 8343728 MuDR ATMU10 0 0 0 0 1 0 2 4838473 4838484 MuDR ATMU3N1 0 1 0 0 0 0 3 11798404 11798463 MuDR ATMU6 0 0 0 0 0 1 3 14197437 14197483 MuDR BOMZH1 0 0 1 0 0 0 2 5751 5828 MuDR VANDAL14 0 0 1 0 0 0 3 10656693 10656731 MuDR VANDAL14 0 0 0 0 1 0 3 14201534 14201570 MuDR VANDAL16 0 0 1 0 0 0 5 4791368 4791441 MuDR VANDAL16 0 0 0 0 1 0 5 8016896 8016905 MuDR VANDAL17 0 0 0 0 1 0 5 11731657 11731681 MuDR VANDAL17 0 1 0 0 0 0 1 29507681 29507683 MuDR VANDAL1 0 0 1 0 0 0 5 21104550 21104573 MuDR VANDAL21 0 0 1 0 0 0 5 24580587 24580598 MuDR VANDAL21 0 0 1 0 0 0 1 11048738 11048796 MuDR VANDAL2 0 0 0 1 0 0 1 11048728 11048868 MuDR VANDAL2 0 0 0 0 0 1 1 17987579 17987659 MuDR VANDAL2 0 0 0 1 0 0 1 29895626 29895660 MuDR VANDAL2 0 0 0 0 1 0 2 5777 5834 MuDR VANDAL2 0 0 0 0 1 0 2 10012 10055 MuDR VANDAL2 0 0 0 1 0 0 2 947915 947941 MuDR VANDAL2 0 0 0 0 1 0 3 18212741 18212861 MuDR VANDAL2 0 0 1 0 0 0 5 13765085 13765131 MuDR VANDAL2 0 0 1 0 0 0 1 9015658 9015725 MuDR VANDAL2N1 0 0 0 0 0 1 1 12728552 12728557 MuDR VANDAL2N1 0 0 1 0 0 0 1 19713456 19713478 MuDR VANDAL2N1 0 0 0 0 1 0 3 2601013 2601160 MuDR VANDAL4 0 0 0 1 0 0 1 2156669 2156716 MuDR VANDAL6 0 0 0 0 0 1 3 4052284 4052319 MuDR VANDAL6 0 0 1 0 0 0 3 14194335 14194418 MuDR VANDAL6 0 0 0 0 1 0 3 15270720 15270732 MuDR VANDAL6 1 0 0 0 0 0 4 3950889 3950997 MuDR VANDAL6 0 0 1 0 0 0 4 14628294 14628326 MuDR VANDAL6 0 0 1 0 0 0 5 9381163 9381172 MuDR VANDAL6 0 0 0 0 1 0 5 10240438 10240571 MuDR VANDAL6 1 0 0 0 0 0 3 18047468 18047470 MuDR VANDAL8 0 0 1 0 0 0