# Conservation of RNA modification sites # # Notes: # - Sites were classified with respect to NCBI gene annotations. # - AltAlleleCount is the maximum allele count for any SNVs used in our study at the # site. # - NumWaySynonymous is the number of bases at the site that would be translated # to the same amino acid as the reference base. # - The Taiaroa study looked only for 5-methylcytosine modifications, but one of the # reported sites is an adenine in the reference genome, suggesting the isolate used in # the study had a SNV at that site, though it was not included among the SNVs we # studied. POS Study Base Context ORF CodonStartPos CodonPos123 SiteType NumWaySynonymous ConservedNucleotide ConservedAminoAcid SynonymouslyConstrained InSCE AltAlleleCount CodAlignView UCSCview 6891 Kim T AATTTTG orf1ab 6890 2 Nonsynonymous 1 ConservedNucleotide =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6890;1;0&p=40&e=40&w=0&cp=1&f=6891", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6851-6931&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 12788 Kim A ACAACAA orf1ab 12788 1 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12787;1;0&p=39&e=41&w=0&cp=0&f=12788", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12749-12829&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 13750 Kim T AAGTTTA orf1ab 13750 1 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid SynonymouslyConstrained InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13749;1;0&p=39&e=41&w=0&cp=0&f=13750", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13711-13791&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 15948 Kim A AAGAATC orf1ab 15946 3 Synonymous 2 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15947;1;0&p=41&e=39&w=0&cp=2&f=15948", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15907-15987&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 17585 Kim A TTGACAC orf1ab 17584 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid SynonymouslyConstrained InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17584;1;0&p=40&e=40&w=0&cp=1&f=17585", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17545-17625&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 25357 Kim C GCTCAAA S 25355 3 Synonymous 4 SynonymouslyConstrained InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25356;1;0&p=41&e=39&w=0&cp=2&f=25357", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25316-25396&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 25460 Kim C ATGCTAC ORF3a 25459 2 Nonsynonymous 1 SynonymouslyConstrained InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25459;1;0&p=40&e=40&w=0&cp=1&f=25460", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25420-25500&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26058 Kim C AGACACT ORF3a 26056 3 Synonymous 2 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26057;1;0&p=41&e=39&w=0&cp=2&f=26058", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26017-26097&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26297 Kim T TACTTCT E 26296 2 Nonsynonymous 1 ConservedNucleotide =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26296;1;0&p=40&e=40&w=0&cp=1&f=26297", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26257-26337&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26731 Kim T CTGTTTA M 26730 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26730;1;0&p=40&e=40&w=0&cp=1&f=26731", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26691-26771&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27106 Kim C CTGCATA M 27105 2 Nonsynonymous 1 InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27105;1;0&p=40&e=40&w=0&cp=1&f=27106", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27066-27146&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27165 Kim G AGTGACA M 27165 1 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid SynonymouslyConstrained InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27164;1;0&p=39&e=41&w=0&cp=0&f=27165", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27126-27206&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27268 Kim A TTTAAAG ORF6 27268 1 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27267;1;0&p=39&e=41&w=0&cp=0&f=27268", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27229-27309&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27305 Kim T ACCTCAT ORF6 27304 2 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27304;1;0&p=40&e=40&w=0&cp=1&f=27305", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27265-27345&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27486 Kim A TTTAAAA ORF7a 27484 3 Synonymous 2 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27485;1;0&p=41&e=39&w=0&cp=2&f=27486", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27445-27525&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27948 Kim G CAAGAAT ORF8 27948 1 Nonsynonymous 1 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27947;1;0&p=39&e=41&w=0&cp=0&f=27948", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27909-27989&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28591 Kim A TCCAAGA N 28589 3 Synonymous 4 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28590;1;0&p=41&e=39&w=0&cp=2&f=28591", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28550-28630&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28612 Kim A CCTAGGA N 28610 3 Synonymous 4 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28611;1;0&p=41&e=39&w=0&cp=2&f=28612", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28571-28651&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28653 Kim A ACAAAGA N 28652 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28652;1;0&p=40&e=40&w=0&cp=1&f=28653", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28613-28693&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28669 Kim G ATGGGTT N 28667 3 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28668;1;0&p=41&e=39&w=0&cp=2&f=28669", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28628-28708&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28701 Kim A CAAAAGA N 28700 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28700;1;0&p=40&e=40&w=0&cp=1&f=28701", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28661-28741&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28789 Kim C CTACGCA N 28787 3 Synonymous 2 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28788;1;0&p=41&e=39&w=0&cp=2&f=28789", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28748-28828&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28805 Kim G AGAGGCG N 28805 1 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28804;1;0&p=39&e=41&w=0&cp=0&f=28805", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28766-28846&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28860 Kim A GAAATTC N 28859 2 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28859;1;0&p=40&e=40&w=0&cp=1&f=28860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28820-28900&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28879 Kim T CAGTAGG N 28877 3 Synonymous 2 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28878;1;0&p=41&e=39&w=0&cp=2&f=28879", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28838-28918&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28898 Kim A GCTAGAA N 28898 1 Synonymous 2 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28897;1;0&p=39&e=41&w=0&cp=0&f=28898", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28859-28939&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28931 Kim G CTTGCTT N 28931 1 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28930;1;0&p=39&e=41&w=0&cp=0&f=28931", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28892-28972&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28949 Kim A GACAGAT N 28949 1 Synonymous 2 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28948;1;0&p=39&e=41&w=0&cp=0&f=28949", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28910-28990&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28958 Kim C AACCAGC N 28958 1 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28957;1;0&p=39&e=41&w=0&cp=0&f=28958", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28919-28999&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29016 Kim A CTAAGAA N 29015 2 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29015;1;0&p=40&e=40&w=0&cp=1&f=29016", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28976-29056&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29041 Kim G TAAGAAG N 29039 3 Synonymous 2 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29040;1;0&p=41&e=39&w=0&cp=2&f=29041", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29000-29080&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29088 Kim A CACAAGC N 29087 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29087;1;0&p=40&e=40&w=0&cp=1&f=29088", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29048-29128&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29127 Kim A GAAATTT N 29126 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29126;1;0&p=40&e=40&w=0&cp=1&f=29127", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29087-29167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29155 Kim A ACAAGGA N 29153 3 Synonymous 2 ConservedNucleotide =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29154;1;0&p=41&e=39&w=0&cp=2&f=29155", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29114-29194&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29170 Kim A CAAACAT N 29168 3 Synonymous 2 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29169;1;0&p=41&e=39&w=0&cp=2&f=29170", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29129-29209&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29298 Kim A ACAAAGA N 29297 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29297;1;0&p=40&e=40&w=0&cp=1&f=29298", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29258-29338&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29313 Kim A TCAAAGA N 29312 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29312;1;0&p=40&e=40&w=0&cp=1&f=29313", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29273-29353&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29378 Kim A CCTAAAA N 29378 1 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29377;1;0&p=39&e=41&w=0&cp=0&f=29378", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29339-29419&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29408 Kim A GAAACTC N 29408 1 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29407;1;0&p=39&e=41&w=0&cp=0&f=29408", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29369-29449&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29444 Kim A CAAACTG N 29444 1 Nonsynonymous 1 ConservedNucleotide =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29443;1;0&p=39&e=41&w=0&cp=0&f=29444", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29405-29485&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29776 Kim A GCTAGGG Noncoding ConservedNucleotide =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29775;1;0&p=39&e=41&w=0&cp=0&f=29776", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29737-29817&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 21 Taiaroa C TCCCAGG Noncoding ConservedNucleotide =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20;1;0&p=39&e=41&w=0&cp=0&f=21", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:-18-62&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 25665 Taiaroa C TTACTCA ORF3a 25663 3 Synonymous 2 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25664;1;0&p=41&e=39&w=0&cp=2&f=25665", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25624-25704&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 25721 Taiaroa C ATGCTTT ORF3a 25720 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25720;1;0&p=40&e=40&w=0&cp=1&f=25721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25681-25761&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26032 Taiaroa C CAGCTGT ORF3a 26032 1 Synonymous 2 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26031;1;0&p=39&e=41&w=0&cp=0&f=26032", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25993-26073&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26509 Taiaroa C GAACTTT Noncoding ConservedNucleotide =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26508;1;0&p=39&e=41&w=0&cp=0&f=26509", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26470-26550&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26642 Taiaroa C TGCCAAC M 26640 3 Synonymous 4 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26641;1;0&p=41&e=39&w=0&cp=2&f=26642", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26601-26681&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26710 Taiaroa C TAGCTTG M 26709 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26709;1;0&p=40&e=40&w=0&cp=1&f=26710", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26670-26750&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26725 Taiaroa C TTGCTGC M 26724 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid SynonymouslyConstrained InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26724;1;0&p=40&e=40&w=0&cp=1&f=26725", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26685-26765&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26728 Taiaroa C CTGCTGT M 26727 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26727;1;0&p=40&e=40&w=0&cp=1&f=26728", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26688-26768&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26776 Taiaroa C TGGCTTG M 26775 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26775;1;0&p=40&e=40&w=0&cp=1&f=26776", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26736-26816&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26801 Taiaroa C GCTCAGC M 26799 3 Synonymous 4 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26800;1;0&p=41&e=39&w=0&cp=2&f=26801", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26760-26840&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 26854 Taiaroa C GGTCATT M 26853 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26853;1;0&p=40&e=40&w=0&cp=1&f=26854", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26814-26894&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27103 Taiaroa C TTGCTGC M 27102 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid SynonymouslyConstrained InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27102;1;0&p=40&e=40&w=0&cp=1&f=27103", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27063-27143&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27116 Taiaroa C TCGCTAC M 27114 3 Synonymous 4 ConservedNucleotide ConservedAminoAcid SynonymouslyConstrained InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27115;1;0&p=41&e=39&w=0&cp=2&f=27116", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27075-27155&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27119 Taiaroa C CTACAGG M 27117 3 Synonymous 2 ConservedAminoAcid InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27118;1;0&p=41&e=39&w=0&cp=2&f=27119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27078-27158&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27180 Taiaroa C TTGCTTG M 27180 1 Nonsynonymous 1 ConservedAminoAcid InSCE =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27179;1;0&p=39&e=41&w=0&cp=0&f=27180", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27141-27221&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27473 Taiaroa C GTACAAC ORF7a 27472 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27472;1;0&p=40&e=40&w=0&cp=1&f=27473", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27433-27513&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27567 Taiaroa C TTGCTTT ORF7a 27565 3 Synonymous 2 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27566;1;0&p=41&e=39&w=0&cp=2&f=27567", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27526-27606&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27584 Taiaroa C TTGCTTT ORF7a 27583 2 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27583;1;0&p=40&e=40&w=0&cp=1&f=27584", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27544-27624&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27590 Taiaroa C TTGCTTG ORF7a 27589 2 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27589;1;0&p=40&e=40&w=0&cp=1&f=27590", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27550-27630&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27610 Taiaroa C AAACACG ORF7a 27610 1 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27609;1;0&p=39&e=41&w=0&cp=0&f=27610", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27571-27651&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27727 Taiaroa C ACACTTT ORF7a 27727 1 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27726;1;0&p=39&e=41&w=0&cp=0&f=27727", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27688-27768&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27807 Taiaroa C CTGCTAT ORF7b 27807 1 Synonymous 2 ConservedNucleotide ConservedAminoAcid InSCE 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27806;1;0&p=39&e=41&w=0&cp=0&f=27807", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27768-27848&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27828 Taiaroa C ATGCTTA ORF7b 27828 1 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27827;1;0&p=39&e=41&w=0&cp=0&f=27828", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27789-27869&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27934 Taiaroa C TAGCTGC ORF8 27933 2 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27933;1;0&p=40&e=40&w=0&cp=1&f=27934", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27894-27974&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 27937 Taiaroa C CTGCATT ORF8 27936 2 Nonsynonymous 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27936;1;0&p=40&e=40&w=0&cp=1&f=27937", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27897-27977&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28060 Taiaroa C CACCTTT ORF8 28059 2 Nonsynonymous 1 SynonymouslyConstrained =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28059;1;0&p=40&e=40&w=0&cp=1&f=28060", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28020-28100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28099 Taiaroa C AATCACC ORF8 28098 2 Nonsynonymous 1 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28098;1;0&p=40&e=40&w=0&cp=1&f=28099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28059-28139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28629 Taiaroa C AAGCTGG N 28628 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid 8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28628;1;0&p=40&e=40&w=0&cp=1&f=28629", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28589-28669&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28896 Taiaroa C CTGCTAG N 28895 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28895;1;0&p=40&e=40&w=0&cp=1&f=28896", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28856-28936&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28932 Taiaroa C TTGCTTT N 28931 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28931;1;0&p=40&e=40&w=0&cp=1&f=28932", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28892-28972&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28940 Taiaroa C CTGCTGC N 28940 1 Synonymous 2 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28939;1;0&p=39&e=41&w=0&cp=0&f=28940", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28901-28981&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 28943 Taiaroa C CTGCTTG N 28943 1 Nonsynonymous 1 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28942;1;0&p=39&e=41&w=0&cp=0&f=28943", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28904-28984&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29025 Taiaroa C CTGCTGC N 29024 2 Nonsynonymous 1 ConservedNucleotide =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29024;1;0&p=40&e=40&w=0&cp=1&f=29025", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28985-29065&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29028 Taiaroa C CTGCTGA N 29027 2 Nonsynonymous 1 ConservedNucleotide =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29027;1;0&p=40&e=40&w=0&cp=1&f=29028", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28988-29068&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29177 Taiaroa C TGGCCGC N 29177 1 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29176;1;0&p=39&e=41&w=0&cp=0&f=29177", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29138-29218&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29178 Taiaroa C GGCCGCA N 29177 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29177;1;0&p=40&e=40&w=0&cp=1&f=29178", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29138-29218&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29247 Taiaroa C TCACACC N 29246 2 Nonsynonymous 1 ConservedNucleotide ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29246;1;0&p=40&e=40&w=0&cp=1&f=29247", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29207-29287&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29330 Taiaroa C TTGCTGA N 29330 1 Synonymous 2 ConservedAminoAcid =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29329;1;0&p=39&e=41&w=0&cp=0&f=29330", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29291-29371&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29550 Taiaroa C ACACAAG Noncoding ConservedNucleotide =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29549;1;0&p=39&e=41&w=0&cp=0&f=29550", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29511-29591&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29733 Taiaroa C CACCGAG Noncoding ConservedNucleotide 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29732;1;0&p=39&e=41&w=0&cp=0&f=29733", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29694-29774&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 29844 Taiaroa A GTGATTT Noncoding ConservedNucleotide =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29843;1;0&p=39&e=41&w=0&cp=0&f=29844", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29805-29885&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview")