R version 3.6.0 (2019-04-26) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 8.1 x64 (build 9600) Matrix products: default locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] parallel stats4 grid stats graphics grDevices utils [8] datasets methods base other attached packages: [1] clusterProfiler_3.14.3 org.Hs.eg.db_3.10.0 AnnotationDbi_1.48.0 [4] IRanges_2.20.1 S4Vectors_0.24.1 Biobase_2.46.0 [7] BiocGenerics_0.32.0 circlize_0.4.8 ComplexHeatmap_2.2.0 [10] cowplot_1.0.0 RColorBrewer_1.1-2 WGCNA_1.68 [13] fastcluster_1.1.25 dynamicTreeCut_1.63-1 forcats_0.4.0 [16] stringr_1.4.0 dplyr_0.8.3 purrr_0.3.3 [19] readr_1.3.1 tidyr_1.0.2 tibble_2.1.3 [22] ggplot2_3.3.2 tidyverse_1.3.0 loaded via a namespace (and not attached): [1] readxl_1.3.1 backports_1.1.5 Hmisc_4.3-1 [4] fastmatch_1.1-0 plyr_1.8.5 igraph_1.2.4.2 [7] splines_3.6.0 BiocParallel_1.20.1 robust_0.4-18.2 [10] urltools_1.7.3 digest_0.6.25 foreach_1.4.8 [13] htmltools_0.4.0 GOSemSim_2.12.0 viridis_0.5.1 [16] GO.db_3.10.0 fansi_0.4.1 magrittr_1.5 [19] checkmate_2.0.0 memoise_1.1.0 fit.models_0.5-14 [22] cluster_2.0.8 doParallel_1.0.15 graphlayouts_0.5.0 [25] modelr_0.1.6 matrixStats_0.55.0 enrichplot_1.6.1 [28] prettyunits_1.1.1 jpeg_0.1-8.1 colorspace_1.4-1 [31] blob_1.2.1 rvest_0.3.5 rrcov_1.5-2 [34] ggrepel_0.8.2 haven_2.2.0 xfun_0.12 [37] crayon_1.3.4 jsonlite_1.6.1 impute_1.60.0 [40] survival_3.1-8 iterators_1.0.12 glue_1.3.1 [43] polyclip_1.10-0 gtable_0.3.0 GetoptLong_0.1.8 [46] shape_1.4.4 DEoptimR_1.0-8 scales_1.1.0 [49] DOSE_3.12.0 mvtnorm_1.0-11 DBI_1.1.0 [52] Rcpp_1.0.3 viridisLite_0.3.0 progress_1.2.2 [55] htmlTable_1.13.3 clue_0.3-57 gridGraphics_0.4-1 [58] foreign_0.8-71 bit_1.1-15.2 europepmc_0.3 [61] preprocessCore_1.48.0 Formula_1.2-3 htmlwidgets_1.5.1 [64] httr_1.4.1 fgsea_1.12.0 acepack_1.4.1 [67] pkgconfig_2.0.3 farver_2.0.3 nnet_7.3-12 [70] dbplyr_1.4.2 ggplotify_0.0.4 tidyselect_1.0.0 [73] rlang_0.4.4 reshape2_1.4.3 munsell_0.5.0 [76] cellranger_1.1.0 tools_3.6.0 cli_2.0.1 [79] generics_0.0.2 RSQLite_2.2.0 ggridges_0.5.2 [82] broom_0.5.4 knitr_1.28 bit64_0.9-7 [85] fs_1.3.1 tidygraph_1.1.2 robustbase_0.93-5 [88] ggraph_2.0.1 nlme_3.1-139 DO.db_2.9 [91] xml2_1.2.2 compiler_3.6.0 rstudioapi_0.11 [94] png_0.1-7 reprex_0.3.0 tweenr_1.0.1 [97] pcaPP_1.9-73 stringi_1.4.6 lattice_0.20-38 [100] Matrix_1.2-17 vctrs_0.2.3 pillar_1.4.3 [103] lifecycle_0.1.0 BiocManager_1.30.10 triebeard_0.3.0 [106] GlobalOptions_0.1.1 data.table_1.12.8 qvalue_2.18.0 [109] R6_2.4.1 latticeExtra_0.6-29 gridExtra_2.3 [112] codetools_0.2-16 MASS_7.3-51.4 assertthat_0.2.1 [115] rjson_0.2.20 withr_2.1.2 hms_0.5.3 [118] rpart_4.1-15 rvcheck_0.1.7 ggforce_0.3.1 [121] lubridate_1.7.4 base64enc_0.1-3