"# type: REF (reference), ASS (alternative splice site), ES (exon skipping), NE (novel exon), IR (intron retentation), NC (new combination of existing exons)" "# transcript_source: STEINMETZLAB for novel transcripts, havana or ensembl or ensembl_havana from GENCODE transcript source" # dubious: potential read through transcripts seqnames start end width strand name type transcript_source dubious P633L_A2 P633L_A2B R634Q_A2 R634Q_A2B WT_A2 WT_A2B WT-NC_A2 WT-NC_A2B 1 827657 854387 26731 + LINC01128-SL2 ASS STEINMETZLAB FALSE 0 1 1 0 2 0 0 1 1 827663 852685 25023 + LINC01128-202 REF havana FALSE 0 0 0 1 0 0 0 0 1 827676 854384 26709 + LINC01128-SL3 ASS STEINMETZLAB FALSE 0 0 0 0 1 2 1 0 1 827676 854392 26717 + LINC01128-207 REF havana FALSE 0 1 0 3 1 5 4 1 1 827688 854402 26715 + LINC01128-205 REF havana FALSE 0 1 1 0 0 3 0 0 1 827693 856032 28340 + LINC01128-SL1 ASS STEINMETZLAB FALSE 0 0 0 2 2 0 0 1 1 1013493 1014531 1039 + ISG15-201 REF ensembl_havana FALSE 15 19 15 12 23 16 9 11 1 1053822 1056116 2295 + AGRN-203 REF havana FALSE 0 0 0 0 1 0 0 0 1 1308612 1311674 3063 + PUSL1-201 REF ensembl_havana FALSE 3 3 4 4 3 6 4 4 1 1399553 1402033 2481 + AL391244.1-203 REF havana FALSE 4 4 1 2 4 11 4 1 1 1399565 1402033 2469 + AL391244.1-201 REF havana FALSE 3 5 7 0 6 11 5 6 1 1399565 1402040 2476 + AL391244.1-SL1 ASS STEINMETZLAB FALSE 0 0 1 2 0 0 0 2 1 1512186 1534684 22499 + ATAD3A-203 REF havana FALSE 1 0 2 0 1 0 0 0 1 1615888 1617317 1430 + MIB2-221 REF havana FALSE 0 1 0 0 1 0 0 0 1 1629642 1630575 934 + MIB2-207 REF havana FALSE 1 0 1 0 0 0 0 0 1 1632180 1634652 2473 + MMP23B-201 REF ensembl_havana FALSE 0 2 1 2 1 0 0 3 1 1633672 1634651 980 + MMP23B-207 REF havana FALSE 1 0 0 0 2 1 1 2 1 1634302 1634649 348 + MMP23B-206 REF havana FALSE 0 0 0 0 0 0 0 1 1 2050477 2185387 134911 + PRKCZ-201 REF ensembl_havana FALSE 0 1 1 0 0 0 0 0 1 2391839 2403526 11688 + RER1-SL2 NE STEINMETZLAB FALSE 2 0 2 1 2 0 0 2 1 2391842 2403300 11459 + RER1-209 REF ensembl_havana FALSE 39 33 28 29 37 48 34 27 1 2391844 2403214 11371 + RER1-202 REF havana FALSE 4 1 0 1 1 3 2 0 1 2391854 2403509 11656 + RER1-SL1 NE STEINMETZLAB FALSE 0 0 1 1 4 1 2 2 1 2395784 2403519 7736 + RER1-207 REF havana FALSE 2 0 2 2 1 3 3 0 1 2402226 2405278 3053 + RER1-206 REF havana FALSE 0 0 1 0 1 0 0 1 1 2586440 2590390 3951 + FAM213B-213 REF havana FALSE 0 1 0 0 1 3 0 0 1 2586480 2591460 4981 + FAM213B-208 REF havana FALSE 0 0 0 0 0 0 1 0 1 2586812 2591462 4651 + FAM213B-205 REF ensembl FALSE 0 0 0 0 1 1 0 0 1 2586818 2591460 4643 + FAM213B-204 REF havana FALSE 3 3 5 4 4 6 2 3 1 2586830 2591461 4632 + FAM213B-203 REF havana FALSE 0 3 2 4 2 7 2 1 1 2587084 2591459 4376 + FAM213B-211 REF havana FALSE 1 2 2 1 1 1 1 2 1 2587101 2591459 4359 + FAM213B-212 REF havana FALSE 2 2 3 0 1 1 1 1 1 3773068 3775432 2365 + SMIM1-202;SMIM1-203 REF havana;havana FALSE 0 0 0 0 0 0 0 1 1 3857470 3885418 27949 + DFFB-205 REF havana FALSE 0 4 1 0 1 4 1 1 1 5992670 6074952 82283 + KCNAB2-216 REF havana FALSE 0 0 0 0 0 1 0 1 1 5992694 6098718 106025 + KCNAB2-206 REF ensembl_havana FALSE 0 1 1 2 2 1 1 0 1 6096379 6098718 2340 + KCNAB2-217 REF havana FALSE 0 0 0 1 0 0 0 0 1 6205508 6208314 2807 + RNF207-203 REF havana FALSE 0 0 1 0 0 1 0 0 1 6206123 6220796 14674 + RNF207-SL2 ASS STEINMETZLAB FALSE 0 0 0 0 2 0 0 1 1 6206124 6220797 14674 + RNF207-201 REF ensembl_havana FALSE 2 4 9 5 14 28 7 5 1 6206130 6208311 2182 + RNF207-205 REF havana FALSE 20 51 60 35 65 88 61 39 1 6206130 6220798 14669 + RNF207-SL1 ASS STEINMETZLAB FALSE 0 0 0 1 2 0 0 1 1 6579996 6589277 9282 + ZBTB48-SL2 NC STEINMETZLAB FALSE 0 1 0 0 2 1 0 0 1 6580001 6589269 9269 + ZBTB48-SL1 NC STEINMETZLAB FALSE 1 2 2 0 2 3 2 1 1 6580031 6589276 9246 + ZBTB48-202 REF ensembl_havana FALSE 0 1 2 1 2 1 1 0 1 6586694 6589271 2578 + ZBTB48-206 REF havana FALSE 0 1 0 0 2 1 0 0 1 6613757 6623987 10231 + PHF13-201 REF ensembl_havana FALSE 4 2 7 2 5 18 7 9 1 6625196 6633559 8364 + THAP3-202 REF havana FALSE 2 12 13 12 22 28 19 13 1 6625198 6633562 8365 + THAP3-204 REF havana FALSE 0 0 0 1 0 0 0 1 1 6625204 6633559 8356 + THAP3-SL1 ASS STEINMETZLAB FALSE 1 2 0 1 1 2 0 1 1 6785468 6888198 102731 + CAMTA1-202 REF havana FALSE 0 2 1 1 2 3 4 3 1 6785476 6872012 86537 + CAMTA1-208 REF ensembl_havana FALSE 39 48 50 53 85 71 46 43 1 6785477 6872012 86536 + CAMTA1-213 REF havana FALSE 8 4 15 6 28 29 8 5 1 6785477 6888198 102722 + CAMTA1-209 REF havana FALSE 4 3 6 4 6 6 6 3 1 6785493 6888198 102706 + CAMTA1-216 REF ensembl_havana FALSE 0 0 1 1 5 7 4 1 1 7771303 7781428 10126 + VAMP3-201 REF ensembl_havana FALSE 59 82 90 71 65 87 49 35 1 7771664 7781431 9768 + VAMP3-202 REF havana FALSE 1 0 2 2 1 1 0 0 1 7837084 7845168 8085 + PER3-206 REF havana FALSE 0 0 0 1 2 0 1 0 1 7961680 7971933 10254 + PARK7-206 REF havana FALSE 0 1 1 1 1 0 0 0 1 7961682 7985276 23595 + PARK7-209 REF havana FALSE 57 75 124 62 131 182 84 68 1 7961711 7985275 23565 + PARK7-204 REF havana FALSE 0 1 0 0 0 1 0 0 1 7961716 7985276 23561 + PARK7-201 REF ensembl_havana FALSE 68 73 85 68 114 148 76 62 1 9539477 9582770 43294 + SLC25A33-201 REF ensembl_havana FALSE 1 2 0 1 3 4 1 2 1 9588922 9603706 14785 + TMEM201-201 REF havana FALSE 0 0 1 0 1 1 0 3 1 9943479 9983112 39634 + NMNAT1-201 REF ensembl_havana FALSE 9 6 9 5 19 12 22 9 1 9943485 9983221 39737 + NMNAT1-SL1 ASS STEINMETZLAB FALSE 0 1 1 1 0 1 0 2 1 9943486 9981760 38275 + NMNAT1-202 REF havana FALSE 0 0 2 1 0 2 1 4 1 9943488 9985032 41545 + NMNAT1-SL2 ASS STEINMETZLAB FALSE 1 0 0 3 1 0 0 0 1 9997220 10016017 18798 + RBP7-201 REF ensembl_havana FALSE 0 1 0 1 7 7 0 3 1 10033200 10180425 147226 + UBE4B-202 REF ensembl_havana FALSE 0 0 0 0 0 0 0 1 1 10170952 10180916 9965 + UBE4B-209 REF havana FALSE 1 0 1 2 0 2 0 1 1 10210594 10306754 96161 + KIF1B-SL1 NC STEINMETZLAB FALSE 0 1 0 0 2 0 1 0 1 10279712 10292464 12753 + KIF1B-210 REF havana FALSE 0 0 1 0 0 0 0 0 1 10399064 10404270 5207 + PGD-204 REF havana FALSE 1 0 0 0 0 0 1 0 1 10399066 10420142 21077 + PGD-201 REF ensembl_havana FALSE 25 15 46 21 64 88 39 35 1 10430437 10451657 21221 + CENPS-CORT-SL1 ASS STEINMETZLAB FALSE 1 1 2 0 3 2 0 0 1 10430439 10442766 12328 + CENPS-201 REF havana FALSE 2 5 3 2 9 6 1 3 1 10430451 10451627 21177 + CENPS-CORT-201 REF havana FALSE 0 2 1 0 0 0 1 0 1 10430750 10451650 20901 + CENPS-CORT-SL2 ASS STEINMETZLAB FALSE 0 0 0 1 0 2 0 2 1 10430774 10442799 12026 + CENPS-204 REF havana FALSE 6 7 11 6 16 14 9 4 1 10430779 10442630 11852 + CENPS-202 REF havana FALSE 0 0 0 0 0 3 2 0 1 10440377 10442729 2353 + CENPS-203 REF havana FALSE 0 1 0 0 0 1 0 0 1 10450214 10451651 1438 + CORT-201 REF ensembl_havana FALSE 0 0 0 1 0 0 0 0 1 10474954 10624477 149524 + PEX14-203 REF havana FALSE 0 0 1 0 2 0 0 0 1 10474960 10630757 155798 + PEX14-201 REF ensembl_havana FALSE 1 0 0 0 2 0 0 0 1 11012655 11024037 11383 + TARDBP-225 REF havana FALSE 0 0 0 0 0 1 2 2 1 11012660 11024037 11378 + TARDBP-201 REF ensembl_havana FALSE 80 88 113 106 139 202 103 99 1 11012662 11024037 11376 + TARDBP-203 REF havana FALSE 0 0 4 0 0 1 0 0 1 11012680 11024037 11358 + TARDBP-228 REF ensembl FALSE 1 0 1 0 2 0 0 0 1 11013730 11024118 10389 + TARDBP-202 REF havana FALSE 0 0 1 0 0 0 0 0 1 11016891 11024188 7298 + TARDBP-218 REF havana FALSE 0 0 0 0 0 0 1 0 1 11023493 11025484 1992 + TARDBP-209 REF havana FALSE 0 1 1 1 0 0 0 0 1 11273226 11286281 13056 + UBIAD1-SL1 ASS STEINMETZLAB FALSE 1 0 1 1 1 3 0 1 1 11273226 11287910 14685 + UBIAD1-202 REF ensembl_havana FALSE 20 23 39 28 44 58 26 27 1 11273229 11296926 23698 + UBIAD1-201 REF havana FALSE 0 0 0 0 0 0 2 0 1 11654877 11662288 7412 + FBXO44-202 REF ensembl_havana FALSE 0 2 0 0 1 0 0 1 1 11654909 11662289 7381 + FBXO44-204 REF havana FALSE 0 0 2 0 5 1 0 1 1 11736121 11750766 14646 + AGTRAP-209 REF havana FALSE 0 0 1 1 1 0 1 0 1 11736138 11750760 14623 + AGTRAP-204 REF ensembl_havana FALSE 0 0 0 0 1 0 0 0 1 11736138 11750767 14630 + AGTRAP-205 REF ensembl_havana FALSE 3 1 2 2 3 3 2 1 1 11736140 11750765 14626 + AGTRAP-SL1 IR STEINMETZLAB FALSE 0 1 2 2 1 1 3 0 1 11736140 11750766 14627 + AGTRAP-201 REF ensembl_havana FALSE 5 6 12 9 17 20 7 8 1 11736168 11750767 14600 + AGTRAP-206 REF havana FALSE 0 0 1 0 0 2 1 0 1 11736173 11750767 14595 + AGTRAP-203 REF havana FALSE 0 0 3 4 1 2 1 0 1 11746004 11750767 4764 + AGTRAP-213 REF havana FALSE 0 0 0 0 0 0 1 0 1 11806242 11829426 23185 + CLCN6-203 REF havana FALSE 0 0 0 2 0 0 0 0 1 11806245 11841415 35171 + CLCN6-202 REF ensembl_havana FALSE 0 0 1 1 3 4 0 3 1 11806248 11821137 14890 + CLCN6-207 REF havana FALSE 0 0 0 1 0 1 0 0 1 11934722 11975536 40815 + PLOD1-201 REF ensembl_havana FALSE 39 27 47 31 38 52 22 40 1 11972886 11975514 2629 + PLOD1-207 REF havana FALSE 0 1 3 0 0 0 1 0 1 11980446 12013500 33055 + MFN2-SL1 NC STEINMETZLAB FALSE 3 1 1 3 3 4 2 4 1 11980446 12013501 33056 + MFN2-201 REF ensembl_havana FALSE 10 12 11 15 15 13 6 13 1 11980447 12013506 33060 + MFN2-203 REF ensembl FALSE 0 0 0 3 1 2 0 2 1 12019489 12032038 12550 + MIIP-201 REF ensembl_havana FALSE 3 3 10 4 10 12 8 6 1 12019498 12032037 12540 + MIIP-SL1 NC STEINMETZLAB FALSE 0 0 0 0 3 2 1 0 1 12464918 12510361 45444 + VPS13D-212 REF havana FALSE 1 1 0 3 0 1 0 0 1 13583832 13617954 34123 + PDPN-201;PDPN-211;PDPN-212 REF ensembl_havana;ensembl;havana FALSE 0 1 1 0 1 1 0 0 1 13583833 13617949 34117 + PDPN-202 REF havana FALSE 29 43 48 45 42 48 29 25 1 13583884 13617932 34049 + PDPN-209 REF havana FALSE 1 0 1 1 0 1 0 0 1 13749427 13774965 25539 + PRDM2-210 REF havana FALSE 0 0 0 0 0 1 0 0 1 13749436 13823496 74061 + PRDM2-213 REF havana FALSE 0 0 0 0 0 0 1 0 1 15152568 15220475 67908 + TMEM51-202 REF ensembl_havana FALSE 2 0 0 0 2 2 0 0 1 15152594 15220428 67835 + TMEM51-204;TMEM51-206 REF ensembl;havana FALSE 2 0 1 1 0 1 1 0 1 15153769 15220472 66704 + TMEM51-203 REF ensembl_havana FALSE 0 0 0 0 0 0 1 2 1 15153792 15220426 66635 + TMEM51-201 REF ensembl_havana FALSE 1 0 0 0 0 0 1 1 1 15526856 15568463 41608 + DNAJC16-210 REF ensembl FALSE 0 0 0 0 3 0 1 1 1 15526872 15568472 41601 + DNAJC16-202 REF ensembl_havana FALSE 2 2 0 0 2 7 5 0 1 15565196 15568464 3269 + DNAJC16-208 REF havana FALSE 0 0 0 0 1 0 0 0 1 15617560 15629590 12031 + DDI2-205 REF havana FALSE 0 0 0 0 0 1 0 0 1 15758778 15785410 26633 + FBLIM1-202 REF ensembl_havana FALSE 1 0 0 0 6 0 2 0 1 15777181 15785352 8172 + FBLIM1-212 REF havana FALSE 1 3 0 1 0 2 0 1 1 15938738 15939650 913 + SPEN-205 REF havana FALSE 0 0 0 0 1 3 0 0 1 16048863 16057305 8443 + CLCNKB-201 REF havana FALSE 0 3 2 1 8 10 2 6 1 16048992 16057305 8314 + CLCNKB-SL1 ASS STEINMETZLAB FALSE 0 3 1 1 1 3 1 0 1 16367235 16396358 29124 + SZRD1-203 REF havana FALSE 0 0 0 0 0 1 0 1 1 16367241 16396364 29124 + SZRD1-201 REF ensembl_havana FALSE 26 5 18 10 16 8 6 15 1 16367242 16396360 29119 + SZRD1-202 REF havana FALSE 17 21 29 22 26 38 20 14 1 16440742 16460067 19326 + NECAP2-204 REF havana FALSE 2 0 1 0 0 0 0 0 1 16440745 16441602 858 + NECAP2-205 REF havana FALSE 6 1 1 2 0 2 0 2 1 16440745 16460075 19331 + NECAP2-201 REF ensembl_havana FALSE 8 3 4 9 8 3 5 10 1 16454128 16460075 5948 + NECAP2-211 REF havana FALSE 0 2 0 0 1 1 0 0 1 16740302 16752344 12043 + CROCCP4-202 REF havana FALSE 1 0 0 1 1 1 1 0 1 17618382 17697866 79485 + ARHGEF10L-203 REF havana FALSE 1 2 2 3 4 2 4 3 1 17694504 17697866 3363 + ARHGEF10L-209 REF havana FALSE 1 0 1 0 0 1 0 0 1 19210395 19243272 32878 + AL035413.1-SL1 ASS STEINMETZLAB FALSE 0 0 0 3 0 2 0 0 1 19210400 19240698 30299 + AL035413.1-201 REF havana FALSE 5 10 4 5 18 11 6 8 1 19251806 19259262 7457 + MRTO4-201 REF ensembl_havana FALSE 3 6 11 10 21 22 9 13 1 19251806 19260124 8319 + MRTO4-SL1 ASS STEINMETZLAB FALSE 0 0 2 1 2 4 3 1 1 19251876 19259441 7566 + MRTO4-SL2 NC STEINMETZLAB FALSE 0 0 0 0 0 2 1 0 1 19257615 19259422 1808 + MRTO4-202 REF havana FALSE 0 0 0 0 1 0 0 1 1 19312324 19329288 16965 + PQLC2-202 REF ensembl_havana FALSE 8 4 1 3 6 12 2 1 1 19312346 19329281 16936 + PQLC2-201 REF ensembl_havana FALSE 2 1 0 0 5 3 1 0 1 19597019 19626622 29604 + MINOS1-201 REF ensembl_havana FALSE 128 121 133 87 280 225 163 97 1 19597020 19626623 29604 + MINOS1-203 REF havana FALSE 1 5 5 1 8 7 2 2 1 19597028 19626625 29598 + MINOS1-205 REF havana FALSE 0 1 0 1 0 1 1 1 1 19597032 19626618 29587 + MINOS1-209 REF ensembl_havana FALSE 0 0 0 0 0 1 1 0 1 19597034 19626620 29587 + MINOS1-210 REF ensembl FALSE 1 0 2 1 0 3 0 0 1 20633483 20651314 17832 + PINK1-201 REF ensembl_havana FALSE 7 7 16 6 13 18 6 9 1 20645609 20651314 5706 + PINK1-202 REF havana FALSE 1 0 1 0 2 2 2 2 1 21440145 21484886 44742 + NBPF3-201 REF havana FALSE 0 0 0 0 0 2 0 0 1 21440147 21484895 44749 + NBPF3-SL1 NE STEINMETZLAB FALSE 0 0 0 0 4 1 0 0 1 21440148 21484899 44752 + NBPF3-202 REF ensembl_havana FALSE 0 0 0 0 0 1 0 0 1 22025511 22031217 5707 + LINC00339-212 REF havana FALSE 0 0 2 0 0 0 0 1 1 22025511 22031219 5709 + LINC00339-202 REF havana FALSE 3 3 9 6 6 10 3 5 1 22052692 22091690 38999 + CDC42-202 REF havana FALSE 2 0 0 2 0 2 1 0 1 22052711 22090605 37895 + CDC42-201 REF ensembl_havana FALSE 3 1 5 5 10 3 4 6 1 22451988 22530679 78692 + ZBTB40-202 REF ensembl_havana FALSE 0 0 1 0 0 0 0 0 1 22710844 22913752 202909 + EPHB2-203 REF ensembl_havana FALSE 0 0 1 1 0 0 0 0 1 23019518 23083684 64167 + KDM1A-201 REF ensembl_havana FALSE 1 1 2 2 4 1 0 3 1 23368987 23371779 2793 + ZNF436-AS1-203 REF havana FALSE 1 2 0 2 2 0 2 0 1 23369046 23371780 2735 + ZNF436-AS1-202 REF havana FALSE 4 2 0 2 4 7 0 1 1 23369192 23371782 2591 + ZNF436-AS1-206 REF havana FALSE 2 1 1 2 2 2 1 1 1 23369203 23371782 2580 + ZNF436-AS1-SL1 NC STEINMETZLAB FALSE 4 5 3 5 4 3 4 2 1 23369212 23371780 2569 + ZNF436-AS1-SL2 ASS STEINMETZLAB FALSE 0 0 2 1 0 1 0 0 1 23691808 23696415 4608 + RPL11-201 REF ensembl_havana FALSE 90 113 186 103 276 258 151 133 1 23692608 23695016 2409 + RPL11-202 REF havana FALSE 3 1 4 3 3 2 2 1 1 23692608 23695878 3271 + RPL11-203 REF havana FALSE 0 1 3 0 3 4 7 2 1 23692608 23696415 3808 + RPL11-205 REF havana FALSE 85 124 213 96 230 277 151 112 1 23743479 23759905 16427 + ELOA-201;ELOA-204;ELOA-203 REF ensembl_havana;ensembl;havana FALSE 19 18 12 18 33 29 14 23 1 23778419 23788228 9810 + PITHD1-201 REF ensembl_havana FALSE 25 16 33 32 38 42 29 24 1 23791145 23795537 4393 + LYPLA2-210 REF havana FALSE 0 0 0 0 1 0 0 0 1 23791181 23795535 4355 + LYPLA2-205 REF ensembl_havana FALSE 14 7 14 10 29 25 11 14 1 23791972 23795535 3564 + LYPLA2-SL1 NC STEINMETZLAB FALSE 0 1 0 0 2 1 1 0 1 23793723 23795520 1798 + LYPLA2-201 REF havana FALSE 1 0 0 1 0 0 0 0 1 23959152 23963279 4128 + PNRC2-203 REF havana FALSE 1 0 1 0 1 0 0 0 1 23959831 23963439 3609 + PNRC2-201 REF ensembl_havana FALSE 145 153 261 184 222 344 180 186 1 23959838 23963442 3605 + PNRC2-202 REF havana FALSE 0 2 0 0 1 0 1 1 1 23960950 23963439 2490 + PNRC2-204 REF havana FALSE 4 5 5 6 4 17 10 8 1 24151548 24160452 8905 + NCRNA00001-1 NE STEINMETZLAB FALSE 12 23 26 16 48 42 14 25 1 24415792 24420086 4295 + NIPAL3-207 REF havana FALSE 2 3 3 3 4 1 2 0 1 24415793 24422490 6698 + NIPAL3-206 REF havana FALSE 1 2 0 0 0 0 0 2 1 24415804 24471574 55771 + NIPAL3-204 REF ensembl_havana FALSE 3 3 4 3 7 8 7 3 1 24503033 24535162 32130 + RCAN3-202 REF ensembl_havana FALSE 0 0 0 0 0 0 1 0 1 24643278 24648944 5667 + SRRM1-223 REF havana FALSE 0 0 0 0 1 0 0 0 1 24643286 24652483 9198 + SRRM1-207 REF havana FALSE 0 0 1 0 0 0 0 0 1 24643293 24650020 6728 + SRRM1-217 REF havana FALSE 1 0 0 1 1 2 2 0 1 24643298 24650019 6722 + SRRM1-SL1 IR STEINMETZLAB FALSE 4 2 8 4 2 9 1 2 1 24643299 24650015 6717 + SRRM1-205 REF havana FALSE 2 1 1 1 4 10 0 0 1 24643299 24671416 28118 + SRRM1-212 REF havana FALSE 0 0 0 1 0 0 1 1 1 24643299 24673260 29962 + SRRM1-201 REF ensembl_havana FALSE 2 1 3 3 6 5 2 2 1 24643300 24648913 5614 + SRRM1-206 REF havana FALSE 1 0 6 1 3 2 3 2 1 24643300 24673262 29963 + SRRM1-202 REF havana FALSE 2 3 0 2 6 4 1 0 1 24643303 24650034 6732 + SRRM1-SL2 IR STEINMETZLAB FALSE 0 0 0 1 1 1 0 0 1 24652522 24662702 10181 + SRRM1-220 REF havana FALSE 0 0 1 2 0 0 1 0 1 24654854 24663066 8213 + SRRM1-214 REF havana FALSE 1 1 0 0 0 1 0 0 1 24666847 24669585 2739 + SRRM1-216 REF havana FALSE 0 0 0 1 0 0 0 0 1 24745432 24844310 98879 + CLIC4-202 REF havana FALSE 1 0 2 1 1 1 1 1 1 24745447 24844267 98821 + CLIC4-201 REF ensembl_havana FALSE 429 343 383 448 610 634 370 417 1 24745457 24797846 52390 + CLIC4-203 REF havana FALSE 7 3 9 0 0 1 0 3 1 25338318 25360986 22669 + TMEM50A-206 REF havana FALSE 1 2 4 3 4 5 2 1 1 25338329 25360986 22658 + TMEM50A-201 REF ensembl_havana FALSE 82 91 109 73 116 129 83 68 1 25338334 25360986 22653 + TMEM50A-205 REF havana FALSE 1 2 0 1 1 1 0 0 1 25338337 25360994 22658 + TMEM50A-203 REF havana FALSE 2 4 2 8 8 3 0 1 1 25430899 25498731 67833 + TMEM57-201 REF ensembl_havana FALSE 0 0 0 0 0 0 1 0 1 25543630 25568882 25253 + LDLRAP1-201 REF ensembl_havana FALSE 1 0 1 3 0 2 2 0 1 25563115 25568879 5765 + LDLRAP1-205 REF havana FALSE 0 0 1 0 0 0 0 0 1 25563662 25568882 5221 + LDLRAP1-204 REF havana FALSE 0 0 0 1 0 0 0 0 1 25618242 25784444 166203 + MAN1C1-203 REF ensembl_havana FALSE 0 0 1 1 0 0 1 0 1 25781064 25785914 4851 + MAN1C1-206 REF havana FALSE 2 1 0 0 2 0 1 1 1 25800326 25815782 15457 + SELENON-203 REF havana FALSE 0 0 1 0 1 2 1 1 1 25819953 25825824 5872 + MTFR1L-213 REF havana FALSE 1 0 0 0 0 0 1 0 1 25819968 25832934 12967 + MTFR1L-SL1 IR STEINMETZLAB FALSE 1 0 4 1 4 8 3 1 1 25819968 25832934 12967 + MTFR1L-204 REF havana FALSE 2 1 7 1 5 6 2 2 1 25819973 25832934 12962 + MTFR1L-203 REF ensembl FALSE 65 64 104 77 139 170 81 81 1 25819974 25832940 12967 + MTFR1L-215 REF havana FALSE 0 0 1 1 0 2 0 0 1 25819979 25832935 12957 + MTFR1L-210 REF havana FALSE 4 7 12 9 11 19 15 9 1 25820180 25832933 12754 + MTFR1L-202 REF ensembl_havana FALSE 2 1 2 3 4 6 1 2 1 25823017 25832933 9917 + MTFR1L-207 REF havana FALSE 2 1 3 2 6 8 4 2 1 25826663 25832935 6273 + MTFR1L-214 REF havana FALSE 0 4 2 2 1 2 4 1 1 26021788 26036444 14657 + EXTL1-201 REF ensembl_havana FALSE 7 3 1 3 2 5 2 0 1 26021790 26036444 14655 + EXTL1-SL1 NC STEINMETZLAB FALSE 1 0 0 0 1 1 1 3 1 26111171 26125529 14359 + PDIK1L-204;PDIK1L-203 REF ensembl;havana FALSE 0 1 1 1 1 2 0 0 1 26111831 26125533 13703 + PDIK1L-201 REF ensembl_havana FALSE 5 3 5 2 2 5 3 1 1 26159016 26162625 3610 + FAM110D-201 REF ensembl_havana FALSE 1 0 1 0 0 2 0 0 1 26169920 26170865 946 + ZNF593-202 REF ensembl_havana FALSE 22 19 31 12 37 33 15 17 1 26169922 26170658 737 + ZNF593-201 REF havana FALSE 0 0 1 0 0 1 0 0 1 26234212 26278805 44594 + CEP85-201 REF ensembl_havana FALSE 3 1 0 0 7 7 5 0 1 26234228 26278805 44578 + CEP85-SL2 IR STEINMETZLAB FALSE 1 0 0 2 0 2 0 0 1 26254594 26255229 636 + CEP85-207 REF havana FALSE 0 1 0 2 0 0 0 0 1 26254622 26278804 24183 + CEP85-SL1 NC STEINMETZLAB FALSE 0 0 1 1 1 2 2 0 1 26257504 26278804 21301 + CEP85-203 REF havana FALSE 0 0 0 0 1 0 0 0 1 26280072 26281520 1449 + SH3BGRL3-202 REF havana FALSE 1 2 0 1 0 3 0 0 1 26280083 26281518 1436 + SH3BGRL3-201 REF ensembl_havana FALSE 115 66 63 59 47 60 39 27 1 26432313 26471291 38979 + DHDDS-209 REF havana FALSE 0 0 0 0 0 1 0 0 1 26432326 26433673 1348 + DHDDS-219 REF havana FALSE 0 0 0 0 0 0 0 1 1 26432326 26439262 6937 + DHDDS-211 REF havana FALSE 0 0 1 1 0 0 0 0 1 26432326 26471291 38966 + DHDDS-201 REF havana FALSE 3 3 5 3 7 3 2 2 1 26432331 26469195 36865 + DHDDS-216 REF ensembl_havana FALSE 0 0 0 0 1 0 0 0 1 26432336 26471290 38955 + DHDDS-217 REF ensembl_havana FALSE 0 0 0 0 0 1 0 0 1 26432343 26448656 16314 + DHDDS-203 REF havana FALSE 0 0 1 0 0 0 0 0 1 26432385 26470270 37886 + DHDDS-SL2 NC STEINMETZLAB FALSE 0 1 0 1 0 1 1 1 1 26432403 26471288 38886 + DHDDS-SL1 NC STEINMETZLAB FALSE 3 1 5 2 3 6 4 1 1 26472495 26475966 3472 + HMGN2-203 REF havana FALSE 2 0 3 1 1 1 3 1 1 26472506 26475958 3453 + HMGN2-206 REF havana FALSE 0 2 2 3 6 7 1 1 1 26472508 26475968 3461 + HMGN2-204 REF havana FALSE 0 0 1 1 2 0 4 2 1 26472509 26475964 3456 + HMGN2-201 REF ensembl_havana FALSE 587 814 1610 923 1769 2487 1260 1079 1 26472511 26475962 3452 + HMGN2-202 REF havana FALSE 1 7 2 8 7 7 2 2 1 26472511 26475966 3456 + 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0 1 109656274 109661697 5424 + GSTM4-SL1 NC STEINMETZLAB FALSE 3 0 3 4 2 8 4 1 1 109656309 109665494 9186 + GSTM4-201 REF ensembl_havana FALSE 5 9 18 3 12 29 6 5 1 109656314 109661697 5384 + GSTM4-204 REF ensembl_havana FALSE 41 59 90 59 109 124 93 59 1 109658835 109661704 2870 + GSTM4-210 REF havana FALSE 0 1 1 0 1 0 0 1 1 109658872 109661697 2826 + GSTM4-211 REF havana FALSE 0 0 0 0 0 1 0 0 1 109668088 109675283 7196 + GSTM2-201 REF ensembl_havana FALSE 18 51 66 50 56 64 42 56 1 109668094 109669594 1501 + GSTM2-211 REF havana FALSE 0 0 1 0 0 0 1 0 1 109671288 109675283 3996 + GSTM2-213 REF havana FALSE 2 0 2 0 0 1 0 0 1 109985042 110022374 37333 + AHCYL1-202 REF havana FALSE 6 2 3 8 6 6 1 2 1 109985139 110022370 37232 + AHCYL1-203 REF ensembl FALSE 0 0 0 0 0 0 0 1 1 110034625 110054629 20005 + STRIP1-201 REF ensembl_havana FALSE 4 3 4 9 9 10 3 5 1 110339440 110346672 7233 + RBM15-202 REF ensembl_havana FALSE 2 1 1 1 4 7 2 3 1 110339446 110346668 7223 + RBM15-201;RBM15-205;RBM15-204 REF ensembl_havana;ensembl;havana FALSE 1 0 3 0 0 2 0 0 1 110407809 110416270 8462 + LAMTOR5-AS1-207 REF havana FALSE 0 0 0 0 0 0 0 1 1 110407826 110416271 8446 + LAMTOR5-AS1-202 REF havana FALSE 0 0 0 1 2 2 0 0 1 110873150 110899920 26771 + CD53-201 REF ensembl_havana FALSE 0 0 4 2 5 7 3 2 1 110897839 110899920 2082 + CD53-202 REF havana FALSE 0 0 0 0 0 1 0 0 1 111140237 111185098 44862 + CEPT1-SL1 ASS STEINMETZLAB FALSE 1 0 1 2 0 2 0 1 1 111140251 111185098 44848 + CEPT1-201 REF ensembl_havana FALSE 6 7 7 6 9 16 9 4 1 111172946 111185092 12147 + CEPT1-204 REF havana FALSE 1 0 0 1 0 1 0 1 1 111181055 111185097 4043 + CEPT1-203 REF havana FALSE 0 0 0 0 0 2 0 0 1 111182451 111190008 7558 + CEPT1-208 REF havana FALSE 0 0 0 0 0 0 1 0 1 111346319 111353010 6692 + PIFO-201 REF havana FALSE 0 0 0 0 0 1 0 0 1 111346600 111351768 5169 + PIFO-202 REF ensembl_havana FALSE 11 16 26 20 32 50 22 23 1 111346616 111353009 6394 + PIFO-SL1 ES STEINMETZLAB FALSE 2 4 2 0 0 3 0 1 1 111348532 111353216 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1 151052662 151059629 6968 - CDC42SE1-204 REF havana FALSE 0 0 0 0 0 2 0 0 1 151052663 151059614 6952 - CDC42SE1-207;CDC42SE1-206 REF ensembl;havana FALSE 5 4 5 4 7 6 5 2 1 151052697 151059575 6879 - CDC42SE1-SL2 NC STEINMETZLAB FALSE 1 1 2 0 0 2 1 0 1 151176692 151190173 13482 - VPS72-201 REF ensembl_havana FALSE 3 0 0 0 0 4 0 4 1 151176749 151190167 13419 - VPS72-202 REF havana FALSE 45 51 74 65 70 115 68 47 1 151176751 151190188 13438 - VPS72-206 REF havana FALSE 1 1 2 0 0 1 0 0 1 151291805 151298929 7125 - PI4KB-212 REF havana FALSE 0 0 0 0 0 1 0 0 1 151291974 151327509 35536 - PI4KB-SL2 NC STEINMETZLAB FALSE 1 0 0 0 1 1 2 1 1 151292133 151327408 35276 - PI4KB-204 REF ensembl_havana FALSE 0 0 0 0 2 2 1 0 1 151292133 151327410 35278 - PI4KB-SL1 NC STEINMETZLAB FALSE 1 1 1 2 1 3 1 3 1 151292133 151327411 35279 - PI4KB-203 REF ensembl_havana FALSE 11 5 6 7 23 15 9 7 1 151292134 151327411 35278 - PI4KB-202 REF havana FALSE 3 2 5 1 1 2 4 1 1 151292134 151327542 35409 - PI4KB-SL3 NC 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10 7 5 1 151893908 151909454 15547 - THEM4-205 REF havana FALSE 2 1 3 2 3 8 2 1 1 151982920 151993833 10914 - S100A10-202 REF ensembl_havana FALSE 134 83 42 74 27 22 10 16 1 152032511 152037004 4494 - S100A11-201 REF ensembl_havana FALSE 59 18 5 20 2 2 1 2 1 153534603 153536028 1426 - S100A6-201 REF ensembl_havana FALSE 4 4 3 2 1 0 1 0 1 153543621 153545798 2178 - S100A4-206 REF havana FALSE 2 0 0 0 1 0 0 0 1 153543626 153545806 2181 - S100A4-204 REF ensembl_havana FALSE 1 1 2 0 2 1 0 1 1 153606893 153613035 6143 - S100A16-204 REF ensembl_havana FALSE 50 73 58 61 49 60 36 38 1 153618810 153627014 8205 - S100A13-202 REF ensembl FALSE 5 1 1 3 0 1 1 0 1 153618810 153627239 8430 - S100A13-203 REF ensembl FALSE 12 11 6 18 6 6 0 2 1 153662039 153670976 8938 - ILF2-201 REF havana FALSE 52 64 148 91 182 167 107 101 1 153667613 153670971 3359 - ILF2-202 REF havana FALSE 1 0 0 0 0 1 0 0 1 153959112 153963541 4430 - SLC39A1-209 REF ensembl FALSE 0 1 0 0 1 0 0 1 1 153959113 153962749 3637 - 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havana FALSE 0 0 0 0 0 0 0 1 11 65528459 65533420 4962 + SCYL1-210 REF havana FALSE 0 0 0 0 0 1 0 0 11 65537854 65538701 848 + SCYL1-215 REF havana FALSE 0 0 0 0 0 0 1 0 11 65570476 65571760 1285 + SSSCA1-201 REF ensembl_havana FALSE 15 13 17 8 23 27 13 13 11 65570602 65571760 1159 + SSSCA1-206 REF havana FALSE 5 2 3 3 6 4 6 5 11 65570885 65571759 875 + SSSCA1-204 REF havana FALSE 0 0 0 1 0 0 0 0 11 65572540 65574190 1651 + FAM89B-201 REF havana FALSE 0 1 1 2 0 0 0 0 11 65572547 65574188 1642 + FAM89B-203 REF havana FALSE 1 6 5 2 4 8 5 2 11 65572552 65574188 1637 + FAM89B-202 REF ensembl_havana FALSE 2 0 4 3 2 2 5 0 11 65650458 65650913 456 + SIPA1-204 REF havana FALSE 0 0 0 0 1 0 0 0 11 65663079 65671715 8637 + NCRNA00015-1 NE STEINMETZLAB FALSE 0 0 2 0 1 1 0 1 11 65712248 65719602 7355 + KAT5-203 REF ensembl_havana FALSE 1 1 2 4 5 3 5 1 11 65712252 65719601 7350 + KAT5-202 REF havana FALSE 3 2 2 4 4 2 2 2 11 65712258 65719600 7343 + KAT5-201 REF ensembl_havana FALSE 1 1 2 2 5 1 4 1 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havana FALSE 0 1 0 0 0 2 0 0 11 66060655 66068886 8232 + SF3B2-210 REF havana FALSE 1 1 1 1 1 2 1 1 11 66070160 66216775 146616 + PACS1-205 REF havana FALSE 0 0 0 0 1 0 0 0 11 66070426 66243232 172807 + PACS1-201 REF ensembl_havana FALSE 2 0 2 1 2 0 0 0 11 66219171 66221640 2470 + PACS1-214;PACS1-215 REF havana;havana FALSE 0 0 2 1 0 0 0 0 11 66230572 66243232 12661 + PACS1-209 REF havana FALSE 1 0 1 0 2 0 0 0 11 66241524 66243224 1701 + PACS1-212 REF havana FALSE 1 1 1 1 2 1 0 0 11 66257768 66267857 10090 + KLC2-204 REF havana FALSE 0 0 0 0 1 0 0 0 11 66268624 66276562 7939 + RAB1B-202 REF havana FALSE 2 3 6 2 0 5 2 4 11 66268628 66276561 7934 + RAB1B-201 REF ensembl_havana FALSE 154 98 154 116 115 230 106 84 11 66410110 66417090 6981 + AP001107.5-203 REF havana FALSE 1 0 2 0 1 1 0 0 11 66480434 66509656 29223 + DPP3-211 REF havana FALSE 4 3 2 1 6 1 1 3 11 66510642 66533595 22954 + BBS1-201 REF ensembl_havana FALSE 3 1 4 5 6 3 3 6 11 66510659 66533594 22936 + BBS1-225 REF ensembl FALSE 0 0 1 0 1 0 0 0 11 66510664 66519721 9058 + BBS1-207 REF havana FALSE 0 0 0 0 0 0 1 0 11 66593152 66606019 12868 + CCS-206 REF havana FALSE 0 0 0 0 0 1 0 0 11 66593185 66606016 12832 + CCS-205 REF havana FALSE 3 2 2 3 6 6 6 2 11 66593186 66606014 12829 + CCS-SL1 IR STEINMETZLAB FALSE 1 1 0 0 6 2 2 5 11 66593186 66606016 12831 + CCS-208 REF ensembl_havana FALSE 17 17 22 16 39 34 18 20 11 66593199 66599959 6761 + CCS-204 REF havana FALSE 2 3 0 0 0 3 3 2 11 66599560 66606014 6455 + CCS-202 REF havana FALSE 0 0 1 0 1 0 0 0 11 66600264 66606014 5751 + CCS-209 REF havana FALSE 0 0 1 0 0 1 0 1 11 66616628 66646465 29838 + RBM14-RBM4-201 REF ensembl_havana FALSE 0 0 0 1 1 1 3 0 11 66616630 66627325 10696 + RBM14-204 REF ensembl_havana FALSE 0 0 0 1 0 0 0 0 11 66616630 66668374 51745 + RBM14-RBM4-SL1 NE STEINMETZLAB FALSE 1 1 1 2 2 1 1 5 11 66616632 66627339 10708 + RBM14-201 REF ensembl_havana FALSE 26 22 36 25 28 55 36 29 11 66616632 66646465 29834 + RBM14-RBM4-203 REF ensembl_havana FALSE 3 1 1 1 0 5 3 1 11 66616637 66646466 29830 + RBM14-RBM4-202 REF havana FALSE 0 2 0 0 2 0 0 2 11 66638684 66668374 29691 + RBM4-202 REF ensembl_havana FALSE 1 0 1 0 1 4 1 4 11 66638695 66641182 2488 + RBM4-206 REF havana FALSE 4 8 9 6 10 16 10 6 11 66638695 66646465 7771 + RBM4-203 REF ensembl_havana FALSE 9 4 4 5 12 18 2 5 11 66638698 66646465 7768 + RBM4-201 REF ensembl_havana FALSE 39 32 79 36 82 90 47 47 11 66638698 66649928 11231 + RBM4-207 REF havana FALSE 0 0 0 1 0 0 0 0 11 66638700 66668369 29670 + RBM4-SL1 NE STEINMETZLAB FALSE 0 0 3 1 4 0 0 4 11 66638701 66646465 7765 + RBM4-211 REF havana FALSE 0 2 1 1 1 5 3 3 11 66638702 66646465 7764 + RBM4-204 REF havana FALSE 16 10 26 20 28 41 26 19 11 66638703 66641185 2483 + RBM4-212 REF havana FALSE 2 5 2 3 3 5 3 0 11 66639788 66646461 6674 + RBM4-205 REF havana FALSE 6 0 9 0 10 8 5 4 11 66744820 66843316 98497 + C11orf80-204 REF havana FALSE 0 0 0 0 0 0 1 0 11 66843448 66846522 3075 + RCE1-201 REF ensembl_havana FALSE 1 2 0 0 6 5 0 2 11 66843449 66846523 3075 + RCE1-202 REF havana FALSE 0 1 0 1 0 0 0 0 11 66858392 66860472 2081 + LRFN4-201 REF ensembl_havana FALSE 1 0 0 1 0 1 0 0 11 67056856 67072013 15158 + RHOD-201 REF ensembl_havana FALSE 10 5 12 6 20 14 10 10 11 67056877 67072012 15136 + RHOD-202 REF havana FALSE 1 0 0 0 1 0 0 0 11 67240095 67255664 15570 + KDM2A-212 REF ensembl_havana FALSE 1 0 2 0 0 0 1 1 11 67252744 67257204 4461 + KDM2A-204 REF havana FALSE 2 0 0 1 0 0 1 0 11 67282053 67283818 1766 + GRK2-208 REF havana FALSE 0 0 0 1 0 0 0 0 11 67289422 67302472 13051 + ANKRD13D-202;ANKRD13D-211 REF havana;ensembl FALSE 1 1 0 2 0 0 1 0 11 67289432 67291349 1918 + ANKRD13D-214 REF havana FALSE 0 0 0 1 2 0 0 0 11 67303521 67312596 9076 + SSH3-201 REF ensembl_havana FALSE 0 0 0 0 3 0 0 0 11 67428495 67435400 6906 + RPS6KB2-209 REF havana FALSE 0 0 1 0 0 0 0 0 11 67428495 67435401 6907 + RPS6KB2-201 REF ensembl_havana FALSE 2 1 4 2 9 1 2 2 11 67483038 67491100 8063 + AIP-203 REF havana FALSE 0 0 2 0 0 0 0 0 11 67483133 67491101 7969 + AIP-201 REF ensembl_havana FALSE 33 20 34 20 43 62 20 18 11 67483150 67489446 6297 + AIP-204 REF havana FALSE 0 0 1 0 0 0 0 0 11 67583814 67586648 2835 + GSTP1-201 REF havana FALSE 0 0 1 0 0 0 0 0 11 67583815 67586648 2834 + GSTP1-202 REF ensembl_havana FALSE 81 65 100 62 143 161 69 70 11 67585150 67586650 1501 + GSTP1-203 REF havana FALSE 2 2 1 0 3 4 0 3 11 67606943 67610481 3539 + NDUFV1-224 REF havana FALSE 0 0 2 0 0 1 0 0 11 67606943 67610516 3574 + NDUFV1-221 REF havana FALSE 2 0 2 1 1 1 3 1 11 67606944 67612533 5590 + NDUFV1-216 REF havana FALSE 7 2 7 8 14 9 14 7 11 67606945 67609639 2695 + NDUFV1-203 REF havana FALSE 2 2 3 1 1 2 4 0 11 67606945 67612532 5588 + NDUFV1-202 REF havana FALSE 1 2 7 1 2 1 8 6 11 67606952 67612525 5574 + NDUFV1-208 REF havana FALSE 1 0 1 0 0 1 0 0 11 67606952 67612532 5581 + NDUFV1-201 REF ensembl_havana FALSE 112 146 279 183 364 414 279 216 11 67607873 67611189 3317 + NDUFV1-211 REF havana FALSE 0 1 0 0 0 1 0 0 11 67611896 67612534 639 + NDUFV1-220 REF havana FALSE 2 0 0 0 0 1 0 1 11 67612174 67612534 361 + NDUFV1-228 REF havana FALSE 0 1 1 1 1 2 0 0 11 68008571 68029270 20700 + ALDH3B1-204 REF ensembl_havana FALSE 2 1 0 3 1 2 1 0 11 68030685 68036641 5957 + NDUFS8-208 REF havana FALSE 0 0 0 0 2 1 1 1 11 68030686 68036642 5957 + NDUFS8-210 REF ensembl_havana FALSE 1 2 3 2 1 3 2 1 11 68030687 68036642 5956 + NDUFS8-201 REF ensembl_havana FALSE 59 94 159 100 229 179 130 89 11 68030694 68034776 4083 + NDUFS8-202 REF havana FALSE 1 4 3 1 0 3 2 0 11 68030705 68034768 4064 + NDUFS8-214 REF havana FALSE 0 0 1 0 0 0 0 0 11 68030730 68036642 5913 + NDUFS8-207 REF havana FALSE 1 4 1 2 4 3 1 1 11 68032150 68036642 4493 + NDUFS8-SL1 ASS STEINMETZLAB FALSE 17 28 43 22 52 61 34 19 11 68036266 68036642 377 + NDUFS8-213 REF havana FALSE 2 1 0 0 3 3 2 0 11 68312650 68449173 136524 + LRP5-201 REF ensembl_havana FALSE 0 0 0 0 0 0 0 1 11 68460731 68614592 153862 + PPP6R3-203 REF ensembl_havana FALSE 1 1 0 3 0 0 0 2 11 68460752 68556092 95341 + PPP6R3-SL1 NC STEINMETZLAB FALSE 0 0 2 2 0 0 1 0 11 68460752 68615329 154578 + PPP6R3-205 REF ensembl_havana FALSE 1 0 0 2 1 0 0 0 11 68558147 68564891 6745 + PPP6R3-223 REF havana FALSE 0 1 1 0 1 3 0 0 11 68609914 68614591 4678 + PPP6R3-208 REF havana FALSE 0 0 0 0 1 5 1 2 11 68903913 68940601 36689 + IGHMBP2-201 REF ensembl_havana FALSE 0 1 0 0 1 1 1 1 11 68931693 68937065 5373 + IGHMBP2-204 REF havana FALSE 0 0 0 0 1 0 0 0 11 69048894 69088484 39591 + TPCN2-201 REF ensembl_havana FALSE 0 0 0 0 0 0 0 1 11 69641159 69643122 1964 + CCND1-202 REF havana FALSE 3 3 1 1 0 0 0 0 11 69641160 69651700 10541 + CCND1-201 REF ensembl_havana FALSE 178 80 72 123 65 81 57 40 11 69641166 69643946 2781 + CCND1-204 REF havana FALSE 0 1 0 0 0 1 0 0 11 69648016 69654472 6457 + CCND1-205 REF havana FALSE 2 0 1 0 3 2 1 0 11 70203315 70207376 4062 + FADD-201 REF ensembl_havana FALSE 4 5 3 2 10 10 4 5 11 70329730 70334796 5067 + PPFIA1-203 REF havana FALSE 0 0 0 1 0 0 0 0 11 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FALSE 3 5 2 3 1 10 0 1 11 95067837 95069496 1660 + SRSF8-202 REF havana FALSE 8 11 9 9 10 20 11 7 11 95089918 95130028 40111 + ENDOD1-201 REF ensembl_havana FALSE 10 2 3 2 1 4 3 2 11 95790486 95822502 32017 + CEP57-SL1 ES STEINMETZLAB FALSE 0 0 1 1 1 1 0 3 11 95790495 95820576 30082 + CEP57-214 REF havana FALSE 3 6 9 5 8 12 9 4 11 95790508 95822490 31983 + CEP57-210 REF havana FALSE 11 11 15 13 22 25 15 20 11 95790514 95832228 41715 + CEP57-202 REF ensembl_havana FALSE 21 24 28 31 46 50 26 21 11 95790522 95832675 42154 + CEP57-201 REF ensembl FALSE 3 2 1 2 1 6 1 1 11 95827551 95832440 4890 + CEP57-209 REF havana FALSE 0 2 0 2 0 7 1 3 11 96390019 96393250 3232 + JRKL-201 REF ensembl_havana FALSE 0 2 3 3 3 3 0 0 11 100687294 100989978 302685 + ARHGAP42-201 REF ensembl FALSE 1 1 1 1 6 1 2 1 11 101915016 101997748 82733 + CEP126-201 REF ensembl_havana FALSE 1 0 0 0 0 2 1 0 11 102110748 102231174 120427 + YAP1-202 REF ensembl FALSE 0 0 0 0 1 0 0 0 11 102110886 102230450 119565 + YAP1-208 REF havana FALSE 0 0 0 0 2 0 1 1 11 102110910 102232020 121111 + YAP1-201 REF havana FALSE 0 0 0 0 0 1 0 1 11 102110959 102230623 119665 + YAP1-209 REF ensembl FALSE 0 0 1 0 0 0 0 0 11 102347227 102378663 31437 + BIRC2-SL3 NE STEINMETZLAB FALSE 0 0 0 2 0 0 0 2 11 102347239 102378663 31425 + BIRC2-201 REF havana FALSE 15 14 9 28 22 31 15 18 11 102347242 102378661 31420 + BIRC2-SL1 MN STEINMETZLAB FALSE 0 0 3 0 0 1 1 1 11 102347243 102378660 31418 + BIRC2-208 REF havana FALSE 0 1 0 1 0 2 1 0 11 102347243 102378662 31420 + BIRC2-206 REF havana FALSE 0 0 0 0 2 0 0 0 11 102347253 102348675 1423 + BIRC2-203 REF havana FALSE 0 0 0 1 0 0 0 0 11 102347256 102378650 31395 + BIRC2-SL2 IR STEINMETZLAB FALSE 1 0 1 0 3 1 0 1 11 102347445 102378663 31219 + BIRC2-204;BIRC2-213 REF havana;ensembl FALSE 1 0 0 0 0 1 0 0 11 102747018 102753290 6273 + WTAPP1-205 REF havana FALSE 0 0 1 0 0 0 0 0 11 105610094 105614415 4322 + GRIA4-210 REF havana FALSE 0 0 0 0 0 1 0 1 11 105610717 105912043 301327 + GRIA4-204 REF havana FALSE 0 0 0 0 0 1 0 0 11 106077658 106098687 21030 + AASDHPPT-203 REF havana FALSE 0 1 0 0 0 1 1 1 11 106077664 106098686 21023 + AASDHPPT-201 REF ensembl_havana FALSE 106 81 110 95 146 231 119 121 11 106092888 106096828 3941 + AASDHPPT-205 REF havana FALSE 0 0 0 0 0 0 0 4 11 107928436 107963402 34967 + RAB39A-201 REF ensembl_havana FALSE 1 1 0 1 0 0 1 0 11 108008930 108104310 95381 + CUL5-201 REF ensembl_havana FALSE 5 5 8 4 8 2 2 4 11 108008935 108106831 97897 + CUL5-SL1 ES STEINMETZLAB FALSE 0 1 1 1 0 1 2 0 11 108008952 108046519 37568 + CUL5-202 REF havana FALSE 0 0 0 0 2 0 0 1 11 108121569 108134316 12748 + ACAT1-203 REF havana FALSE 0 1 1 0 1 1 0 2 11 108121570 108147591 26022 + ACAT1-201 REF ensembl_havana FALSE 66 112 179 142 262 319 135 122 11 108146230 108147588 1359 + ACAT1-210 REF havana FALSE 1 4 4 2 1 5 0 2 11 108223092 108229353 6262 + ATM-228 REF havana FALSE 0 1 1 0 0 1 0 0 11 108665082 108940916 275835 + DDX10-201 REF ensembl_havana FALSE 2 2 4 2 5 4 3 0 11 108665130 108675688 10559 + DDX10-208 REF havana FALSE 0 0 0 0 0 1 0 0 11 108838461 108841477 3017 + DDX10-205 REF havana FALSE 0 0 0 1 0 0 0 0 11 109422152 109425594 3443 + C11orf87-201 REF ensembl_havana FALSE 1 0 6 4 1 3 3 9 11 110137274 110171830 34557 + ZC3H12C-202 REF havana FALSE 0 0 0 0 0 1 0 0 11 110430104 110463226 33123 + FDX1-201 REF ensembl_havana FALSE 18 24 41 21 47 48 24 31 11 111540730 111560958 20229 + LAYN-209 REF havana FALSE 1 0 0 0 1 1 0 0 11 111602464 111725146 122683 + SIK2-201 REF ensembl_havana FALSE 1 0 0 0 1 0 0 0 11 111878974 111884069 5096 + C11orf1-202 REF havana FALSE 1 8 4 1 9 8 10 7 11 111879488 111884069 4582 + C11orf1-201 REF ensembl_havana FALSE 8 6 18 17 20 24 15 8 11 111879508 111884070 4563 + C11orf1-204 REF havana FALSE 2 1 2 2 4 4 3 1 11 111912771 111914091 1321 + HSPB2-201 REF ensembl_havana FALSE 3 0 2 1 12 15 8 9 11 111918937 111926866 7930 + C11orf52-201 REF ensembl_havana FALSE 0 0 2 2 9 2 4 4 11 111937364 112021142 83779 + 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8016 + SLC25A3-203 REF havana FALSE 0 0 0 1 1 0 0 0 12 98593691 98601704 8014 + SLC25A3-216 REF havana FALSE 1 0 1 0 1 2 2 0 12 98593691 98601705 8015 + SLC25A3-202 REF ensembl FALSE 189 282 484 305 498 599 395 294 12 98593691 98601705 8015 + SLC25A3-217 REF havana FALSE 96 119 251 112 346 422 208 197 12 98593692 98597973 4282 + SLC25A3-206 REF havana FALSE 0 0 3 0 2 2 0 1 12 98593692 98597976 4285 + SLC25A3-209 REF havana FALSE 0 0 2 0 1 4 1 2 12 98593696 98596353 2658 + SLC25A3-215 REF havana FALSE 1 4 2 0 5 2 1 2 12 98593751 98601705 7955 + SLC25A3-201 REF ensembl_havana FALSE 18 20 28 17 42 52 30 31 12 98594033 98598020 3988 + SLC25A3-213 REF havana FALSE 0 0 0 0 1 0 0 0 12 98597878 98598674 797 + SLC25A3-205 REF havana FALSE 0 0 0 1 1 2 0 0 12 98600002 98601704 1703 + SLC25A3-210 REF havana FALSE 4 8 11 5 7 16 10 7 12 98601215 98601705 491 + SLC25A3-207 REF havana FALSE 2 1 10 1 10 3 5 7 12 100200811 100207786 6976 + ACTR6-205 REF havana FALSE 1 0 0 0 1 1 0 0 12 100200814 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DHRS1-SL1 NC STEINMETZLAB FALSE 0 0 4 0 0 1 1 0 14 24290602 24299756 9155 - DHRS1-201 REF ensembl_havana FALSE 11 9 32 22 25 23 15 15 14 24298239 24299760 1522 - DHRS1-203 REF havana FALSE 0 1 0 0 3 1 0 1 14 24439768 24442453 2686 - SDR39U1-SL2 ASS STEINMETZLAB FALSE 1 0 0 0 5 2 0 2 14 24439769 24442453 2685 - SDR39U1-205 REF havana FALSE 0 6 0 4 6 6 1 3 14 24439769 24442453 2685 - SDR39U1-210 REF havana FALSE 0 0 1 0 2 1 2 0 14 24439769 24442453 2685 - SDR39U1-203 REF ensembl_havana FALSE 22 25 46 26 37 48 29 24 14 24439769 24442453 2685 - SDR39U1-208 REF havana FALSE 3 0 1 0 2 2 1 3 14 24439769 24442670 2902 - SDR39U1-218 REF havana FALSE 1 3 5 3 5 7 2 3 14 24439769 24442773 3005 - SDR39U1-212 REF havana FALSE 1 1 0 0 0 4 0 0 14 24439770 24442453 2684 - SDR39U1-202 REF havana FALSE 7 3 5 2 4 6 3 6 14 24439770 24442454 2685 - SDR39U1-209 REF havana FALSE 4 1 2 3 4 2 6 4 14 24439770 24442772 3003 - SDR39U1-SL1 NC STEINMETZLAB FALSE 3 1 2 2 3 2 1 1 14 24439770 24442775 3006 - 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235 116 286 339 176 145 14 45121544 45130802 9259 - FKBP3-203 REF havana FALSE 0 0 1 0 0 0 1 0 14 45203194 45253174 49981 - MIS18BP1-201 REF ensembl_havana FALSE 0 0 0 1 3 0 0 1 14 45203209 45207006 3798 - MIS18BP1-206 REF havana FALSE 0 0 0 0 0 1 0 0 14 45210128 45224531 14404 - MIS18BP1-205 REF havana FALSE 0 1 0 0 0 1 0 0 14 45224265 45253190 28926 - MIS18BP1-SL1 NC STEINMETZLAB FALSE 0 1 1 1 1 5 1 0 14 45246871 45253180 6310 - MIS18BP1-202 REF havana FALSE 2 0 0 0 1 2 0 2 14 47764954 47901644 136691 - LINC00648-SL6 ASS STEINMETZLAB FALSE 0 0 0 0 0 1 2 0 14 47764955 47795045 30091 - LINC00648-204 REF havana FALSE 0 0 0 0 2 3 1 1 14 47764956 47795024 30069 - LINC00648-202 REF havana FALSE 0 2 3 1 17 8 7 3 14 47764956 47901642 136687 - LINC00648-SL7 NE STEINMETZLAB FALSE 0 0 0 0 0 3 0 0 14 47764956 47901644 136689 - LINC00648-SL2 ASS STEINMETZLAB FALSE 1 1 2 1 0 5 2 1 14 47764956 47901646 136691 - LINC00648-SL3 NE STEINMETZLAB FALSE 1 1 0 1 2 5 1 2 14 47764956 47901658 136703 - 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FALSE 0 0 2 1 1 0 1 1 14 50246466 50312220 65755 - L2HGDH-202 REF ensembl_havana FALSE 1 2 2 6 8 4 5 2 14 50418524 50532524 114001 - MAP4K5-201 REF ensembl_havana FALSE 0 0 0 1 1 0 1 0 14 50464094 50532546 68453 - MAP4K5-SL1 NC STEINMETZLAB FALSE 0 1 0 3 5 2 1 0 14 50503364 50532524 29161 - MAP4K5-204 REF havana FALSE 0 0 0 0 0 0 0 1 14 50634368 50668301 33934 - SAV1-201 REF ensembl_havana FALSE 0 1 0 4 1 3 0 0 14 50720809 50726092 5284 - NIN-218 REF havana FALSE 0 0 0 0 0 2 1 0 14 50791675 50830568 38894 - NIN-215 REF havana FALSE 0 0 0 0 0 1 0 0 14 50803915 50830643 26729 - NIN-208 REF havana FALSE 0 0 0 0 0 1 2 0 14 50905220 50944445 39226 - PYGL-201 REF ensembl_havana FALSE 6 11 20 8 29 39 15 13 14 50905222 50944446 39225 - PYGL-206 REF ensembl_havana FALSE 0 0 0 1 1 0 0 0 14 50923255 50944444 21190 - PYGL-203 REF havana FALSE 3 2 4 1 1 4 1 2 14 50975718 51095074 119357 - TRIM9-201 REF ensembl_havana FALSE 1 1 2 0 1 0 0 1 14 50996068 51095116 99049 - TRIM9-203 REF havana FALSE 3 2 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FALSE 0 0 0 0 0 1 0 0 15 65196396 65211474 15079 - CILP-201 REF ensembl_havana FALSE 2 1 1 0 0 0 0 1 15 65258103 65286695 28593 - PARP16-201 REF ensembl_havana FALSE 0 2 7 4 8 10 8 4 15 65446637 65517668 71032 - DPP8-SL2 NC STEINMETZLAB FALSE 1 2 1 1 1 2 0 0 15 65446637 65517680 71044 - DPP8-SL1 NC STEINMETZLAB FALSE 1 2 0 0 5 1 1 2 15 65446637 65517680 71044 - DPP8-SL4 NC STEINMETZLAB FALSE 0 0 2 0 0 0 0 1 15 65446640 65517679 71040 - DPP8-201 REF ensembl_havana FALSE 12 6 8 12 12 14 7 13 15 65446644 65517680 71037 - DPP8-203;DPP8-210 REF havana;havana FALSE 0 0 0 0 0 1 0 0 15 65446645 65517668 71024 - DPP8-204 REF ensembl_havana FALSE 0 0 0 1 1 2 0 0 15 65446647 65517678 71032 - DPP8-SL3 NC STEINMETZLAB FALSE 2 0 1 1 1 1 0 1 15 65497979 65517671 19693 - DPP8-211 REF havana FALSE 0 0 1 0 0 0 0 0 15 65578766 65611120 32355 - INTS14-SL1 NC STEINMETZLAB FALSE 1 0 0 0 3 1 0 0 15 65578782 65611127 32346 - INTS14-202 REF ensembl_havana FALSE 0 0 0 1 0 2 0 0 15 65578783 65611114 32332 - 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REF havana FALSE 0 0 0 2 0 0 0 0 15 68786278 68820870 34593 - ANP32A-208 REF havana FALSE 2 3 2 0 6 1 3 5 15 70654575 70664817 10243 - UACA-213 REF havana FALSE 1 0 0 2 0 0 1 0 15 70655368 70660216 4849 - UACA-208 REF havana FALSE 0 0 1 0 0 0 0 0 15 70656935 70702276 45342 - UACA-202 REF ensembl_havana FALSE 1 1 1 0 1 1 0 0 15 70656944 70763483 106540 - UACA-201 REF ensembl_havana FALSE 0 0 0 1 0 0 1 0 15 70692823 70763500 70678 - UACA-SL1 ASS STEINMETZLAB FALSE 0 0 1 3 1 1 1 0 15 70831553 70854143 22591 - LARP6-201 REF ensembl_havana FALSE 2 1 1 0 1 3 1 2 15 70851450 70854130 2681 - LARP6-202 REF ensembl_havana FALSE 0 1 0 0 0 0 2 0 15 70881349 70892401 11053 - THAP10-201 REF ensembl_havana FALSE 1 7 14 12 16 17 17 4 15 71826026 71898058 72033 - MYO9A-204 REF havana FALSE 0 0 0 1 0 2 1 0 15 71951252 72117992 166741 - MYO9A-SL1 NC STEINMETZLAB FALSE 0 1 1 0 0 0 1 2 15 72199034 72202589 3556 - PKM-212 REF havana FALSE 3 0 2 1 9 1 2 1 15 72199034 72231191 32158 - PKM-SL1 ASS STEINMETZLAB 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REF havana FALSE 0 2 1 1 2 4 1 1 15 74920280 74938044 17765 - COX5A-201 REF ensembl_havana FALSE 407 507 861 466 1126 1228 697 593 15 74920280 74938044 17765 - COX5A-204 REF havana FALSE 6 17 10 8 15 22 10 15 15 74923667 74938051 14385 - COX5A-203 REF havana FALSE 3 2 7 0 1 1 0 2 15 75355794 75368602 12809 - MAN2C1-201 REF havana FALSE 0 1 0 1 1 6 2 3 15 75355800 75368594 12795 - MAN2C1-242 REF havana FALSE 0 0 1 0 0 1 0 1 15 75370930 75451683 80754 - SIN3A-202 REF ensembl_havana FALSE 0 1 0 0 3 2 0 0 15 75371104 75375744 4641 - SIN3A-207 REF havana FALSE 0 1 1 0 0 2 1 2 15 75412885 75455810 42926 - SIN3A-205 REF havana FALSE 0 0 0 0 0 1 0 0 15 75430269 75451547 21279 - SIN3A-212 REF havana FALSE 0 0 0 1 0 0 0 0 15 75467130 75579041 111912 - PTPN9-206 REF ensembl_havana FALSE 1 1 0 1 3 4 0 2 15 75467928 75470764 2837 - PTPN9-205 REF havana FALSE 0 1 0 0 0 0 2 0 15 75598092 75625704 27613 - SNUPN-201 REF ensembl_havana FALSE 5 5 8 11 5 8 6 6 15 75598092 75626297 28206 - SNUPN-SL1 NC 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havana FALSE 0 0 3 1 1 1 0 0 15 83004669 83011623 6955 - C15orf40-205 REF havana FALSE 1 2 1 0 3 0 1 1 15 83004856 83011615 6760 - C15orf40-201 REF ensembl_havana FALSE 12 9 11 9 7 16 10 12 15 83016441 83067155 50715 - BTBD1-201 REF ensembl_havana FALSE 7 6 9 3 16 12 5 7 15 83138177 83207537 69361 - HDGFL3-201 REF ensembl_havana FALSE 21 12 29 16 35 49 24 19 15 83164012 83207542 43531 - HDGFL3-205 REF havana FALSE 2 1 3 0 2 1 0 1 15 84201737 84230152 28416 - GOLGA2P7-203 REF havana FALSE 0 0 0 1 0 0 0 0 15 84546241 84570697 24457 - UBE2Q2P1-207 REF havana FALSE 0 0 0 0 0 0 0 1 15 84642425 84654284 11860 - WDR73-207 REF havana FALSE 0 0 0 0 0 1 0 0 15 84642438 84654280 11843 - WDR73-202 REF ensembl_havana FALSE 7 15 21 16 22 35 19 13 15 84642786 84647956 5171 - WDR73-206 REF havana FALSE 0 0 0 0 0 0 1 0 15 84642930 84654285 11356 - WDR73-SL1 ES STEINMETZLAB FALSE 0 0 3 0 0 0 0 1 15 84643066 84654216 11151 - WDR73-208 REF havana FALSE 1 2 5 2 2 6 2 1 15 84643118 84654208 11091 - 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ensembl_havana FALSE 0 0 0 1 0 1 0 0 15 100569234 100602181 32948 - LINS1-SL1 ASS STEINMETZLAB FALSE 0 0 0 0 3 2 2 1 15 100569239 100602182 32944 - LINS1-SL2 IR STEINMETZLAB FALSE 0 0 1 0 3 0 0 0 15 100569240 100602180 32941 - LINS1-201 REF ensembl_havana FALSE 1 1 3 2 0 2 2 3 15 100569266 100572031 2766 - LINS1-203 REF havana FALSE 0 0 0 0 1 0 0 0 15 100573501 100602180 28680 - LINS1-214 REF havana FALSE 0 0 0 1 3 3 2 1 15 100579412 100602170 22759 - LINS1-208 REF havana FALSE 0 0 0 0 1 0 0 0 15 101176861 101187880 11020 - CHSY1-206 REF havana FALSE 2 1 3 6 1 4 2 0 15 101176861 101188053 11193 - CHSY1-202 REF havana FALSE 2 1 6 6 2 4 0 4 15 101176861 101251212 74352 - CHSY1-201 REF ensembl_havana FALSE 3 1 1 0 0 0 0 2 15 101271184 101277434 6251 - SELENOS-201 REF ensembl_havana FALSE 1 2 1 1 3 1 0 1 15 101272193 101277454 5262 - SELENOS-203 REF havana FALSE 40 26 31 25 59 47 29 33 15 101274632 101277430 2799 - SELENOS-204 REF havana FALSE 0 0 3 0 2 0 1 2 15 101275281 101277474 2194 - 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1 0 1 0 0 1 16 1827228 1840194 12967 + FAHD1-201 REF havana FALSE 1 1 4 4 3 11 2 4 16 1827234 1839902 12669 + FAHD1-202 REF ensembl_havana FALSE 0 0 1 0 2 3 0 1 16 1959543 1961974 2432 + NDUFB10-205 REF havana FALSE 6 4 5 3 10 5 5 2 16 1959546 1961291 1746 + NDUFB10-203 REF havana FALSE 4 2 6 3 3 4 3 2 16 1959552 1961973 2422 + NDUFB10-201 REF ensembl_havana FALSE 198 256 322 226 477 560 284 249 16 1959558 1961973 2416 + NDUFB10-204 REF havana FALSE 0 1 4 0 3 5 1 1 16 1959576 1961738 2163 + NDUFB10-202 REF ensembl_havana FALSE 0 0 2 3 5 2 1 0 16 1965013 1965500 488 + SNHG9-201 REF havana FALSE 2 4 3 4 7 5 2 0 16 1972067 1978683 6617 + TBL3-205 REF ensembl_havana FALSE 2 2 11 7 16 11 3 4 16 1972098 1974807 2710 + TBL3-202 REF havana FALSE 0 0 0 0 0 1 0 0 16 1977195 1978681 1487 + TBL3-204 REF havana FALSE 0 0 1 0 0 0 0 0 16 1984201 1984933 733 + GFER-202 REF havana FALSE 0 1 0 0 0 1 0 0 16 1984210 1986111 1902 + GFER-201 REF ensembl_havana FALSE 1 5 6 1 5 6 9 3 16 1984755 1986674 1920 + 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3 51975076 51978567 3492 + ABHD14A-203 REF havana FALSE 0 2 0 1 3 2 2 0 3 51975080 51989182 14103 + ABHD14A-ACY1-201 REF havana FALSE 0 0 0 0 0 0 0 1 3 51983439 51989188 5750 + ACY1-210 REF ensembl_havana FALSE 0 0 0 0 0 1 0 0 3 51983462 51989188 5727 + ACY1-SL1 ES STEINMETZLAB FALSE 0 0 1 0 0 3 2 0 3 51983464 51984814 1351 + ACY1-211 REF havana FALSE 0 0 2 1 1 4 0 0 3 51983465 51989189 5725 + ACY1-215 REF ensembl_havana FALSE 5 10 11 8 27 30 15 13 3 51983472 51989193 5722 + ACY1-217 REF havana FALSE 0 1 0 1 2 2 1 0 3 51983473 51988934 5462 + ACY1-207 REF ensembl_havana FALSE 0 0 0 0 1 0 0 0 3 51988519 51989172 654 + ACY1-227 REF havana FALSE 1 0 0 0 1 0 0 0 3 52198142 52214301 16160 + ALAS1-204 REF ensembl_havana FALSE 33 33 57 34 66 103 51 48 3 52198150 52214300 16151 + ALAS1-201 REF havana FALSE 7 1 12 7 7 16 8 5 3 52198159 52214303 16145 + ALAS1-205 REF ensembl_havana FALSE 11 2 6 9 15 13 10 5 3 52245785 52250596 4812 + PPM1M-202 REF ensembl FALSE 0 0 2 1 0 0 0 0 3 52410592 52414833 4242 + PHF7-SL2 IR STEINMETZLAB FALSE 0 0 0 0 0 0 3 0 3 52410629 52414833 4205 + PHF7-SL3 ES STEINMETZLAB FALSE 0 0 1 1 1 0 0 0 3 52410647 52414824 4178 + PHF7-SL1 NC STEINMETZLAB FALSE 0 0 1 0 4 2 0 2 3 52410652 52414828 4177 + PHF7-207 REF havana FALSE 2 0 1 0 3 2 0 0 3 52410660 52414833 4174 + PHF7-208 REF havana FALSE 2 3 3 0 7 7 3 1 3 52455605 52481908 26304 + NISCH-212 REF havana FALSE 0 0 1 1 1 0 3 1 3 52455614 52481908 26295 + NISCH-202 REF ensembl_havana FALSE 3 2 1 2 3 0 2 1 3 52455615 52493066 37452 + NISCH-201 REF ensembl FALSE 5 4 3 2 6 7 3 3 3 52536608 52540524 3917 + SMIM4-201 REF havana FALSE 9 6 9 3 13 7 5 2 3 52536615 52586454 49840 + SMIM4-SL1 ASS STEINMETZLAB FALSE 1 2 0 0 2 3 0 0 3 52536647 52540523 3877 + SMIM4-203 REF ensembl_havana FALSE 12 13 13 6 25 15 7 3 3 52685856 52694496 8641 + GNL3-SL1 ASS STEINMETZLAB FALSE 0 1 3 0 1 2 0 0 3 52686024 52687546 1523 + GNL3-204 REF havana FALSE 0 0 3 0 2 1 0 0 3 52686032 52690679 4648 + GNL3-210 REF havana FALSE 0 0 1 0 0 2 0 0 3 52686033 52694490 8458 + GNL3-202 REF havana FALSE 11 10 36 11 40 31 22 10 3 52686038 52694491 8454 + GNL3-211 REF havana FALSE 0 0 0 0 0 0 1 0 3 52686049 52694487 8439 + GNL3-201 REF ensembl_havana FALSE 1 0 0 0 1 6 2 0 3 52705874 52706862 989 + SPCS1-203 REF havana FALSE 1 0 0 0 0 1 0 0 3 52706118 52708165 2048 + SPCS1-206;SPCS1-201;SPCS1-205 REF ensembl_havana;ensembl;havana FALSE 101 97 157 83 173 222 122 121 3 52706287 52708162 1876 + SPCS1-204 REF havana FALSE 2 6 2 1 1 2 1 1 3 53808405 53811727 3323 + CACNA1D-212 REF havana FALSE 1 0 1 0 2 6 5 2 3 53846571 53865494 18924 + IL17RB-202 REF havana FALSE 0 0 0 0 1 2 0 0 3 53846574 53865591 19018 + IL17RB-201 REF ensembl_havana FALSE 1 0 1 0 2 5 1 0 3 56557197 56569602 12406 + CCDC66-208 REF havana FALSE 0 0 0 0 0 1 0 0 3 56557206 56621780 64575 + CCDC66-203 REF ensembl_havana FALSE 0 1 1 1 0 0 0 0 3 56557224 56621758 64535 + CCDC66-202 REF havana FALSE 0 0 0 0 0 1 0 0 3 56617110 56621801 4692 + CCDC66-217 REF havana FALSE 0 0 0 0 1 0 0 0 3 57227832 57271372 43541 + APPL1-201 REF ensembl_havana FALSE 0 2 2 3 5 4 1 4 3 57556292 57561950 5659 + PDE12-201 REF ensembl_havana FALSE 6 8 4 5 10 9 5 5 3 57556300 57562000 5701 + PDE12-202 REF havana FALSE 0 0 0 0 0 2 0 0 3 57756318 57929160 172843 + SLMAP-201 REF havana FALSE 1 0 0 0 2 0 0 0 3 57756922 57927726 170805 + SLMAP-206 REF havana FALSE 0 0 0 0 0 0 0 1 3 57757396 57929166 171771 + SLMAP-208 REF havana FALSE 0 0 0 0 0 0 0 1 3 57890006 57918480 28475 + SLMAP-207 REF havana FALSE 0 0 0 0 0 2 0 0 3 57890010 57929165 39156 + SLMAP-205 REF ensembl_havana FALSE 23 11 11 25 11 17 6 8 3 57890012 57929165 39154 + SLMAP-SL2 NC STEINMETZLAB FALSE 7 5 7 13 9 16 10 3 3 57890015 57929165 39151 + SLMAP-SL1 NC STEINMETZLAB FALSE 11 16 7 32 10 13 7 5 3 57890042 57912710 22669 + SLMAP-209 REF havana FALSE 0 0 0 0 0 0 1 0 3 57916975 57929165 12191 + SLMAP-210 REF havana FALSE 0 0 0 0 0 0 0 1 3 58165465 58171968 6504 + FLNB-211 REF havana FALSE 0 0 1 4 0 2 0 2 3 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4422 + RPS18-233 REF havana FALSE 1 0 0 1 0 1 2 0 6 33272630 33276503 3874 + RPS18-236 REF havana FALSE 6 2 11 2 23 20 6 9 6 33275994 33276504 511 + RPS18-235 REF havana FALSE 1 1 2 2 7 3 4 2 6 33289602 33290925 1324 + PFDN6-204 REF havana FALSE 0 1 0 1 1 2 1 5 6 33289658 33290677 1020 + PFDN6-207 REF havana FALSE 1 1 1 0 1 0 0 0 6 33289770 33290930 1161 + PFDN6-201 REF ensembl_havana FALSE 0 1 3 1 2 7 4 5 6 33391835 33409894 18060 + KIFC1-211 REF ensembl_havana FALSE 1 3 7 1 5 1 3 1 6 33411054 33416436 5383 + PHF1-202 REF ensembl_havana FALSE 1 0 0 1 2 0 0 0 6 33415585 33416442 858 + PHF1-207 REF havana FALSE 0 0 1 0 0 0 0 0 6 33454594 33457540 2947 + ZBTB9-201 REF ensembl_havana FALSE 6 6 8 7 17 17 15 13 6 33454604 33457537 2934 + ZBTB9-SL1 ASS STEINMETZLAB FALSE 0 0 0 0 3 1 0 2 6 34219378 34220304 927 + CYCSP55-201 REF havana FALSE 0 1 1 0 2 5 1 0 6 34236906 34246226 9321 + HMGA1-201 REF ensembl_havana FALSE 2 1 1 0 7 2 3 2 6 34236911 34246226 9316 + HMGA1-204 REF havana FALSE 0 0 0 0 5 0 0 1 6 34237159 34246223 9065 + HMGA1-206 REF havana FALSE 0 0 1 0 5 0 0 0 6 34237182 34246228 9047 + HMGA1-205 REF ensembl FALSE 1 0 1 0 4 0 1 2 6 34466123 34534342 68220 + PACSIN1-207;PACSIN1-201;PACSIN1-202 REF ensembl;ensembl_havana;havana FALSE 0 1 0 0 1 0 1 0 6 34696447 34697467 1021 + AL451165.2-201 REF havana FALSE 0 3 0 1 4 2 0 3 6 34696960 34697467 508 + AL451165.2-202 REF havana FALSE 1 5 3 5 8 7 4 5 6 34757464 34773787 16324 + SNRPC-203 REF havana FALSE 1 0 0 0 0 1 0 0 6 34757514 34773788 16275 + SNRPC-201 REF ensembl_havana FALSE 68 79 134 99 165 150 104 89 6 34757912 34773788 15877 + SNRPC-202 REF havana FALSE 12 18 23 24 18 33 27 14 6 35258922 35288838 29917 + ZNF76-210 REF havana FALSE 0 0 0 0 1 0 0 0 6 35259525 35291874 32350 + ZNF76-209 REF havana FALSE 0 0 1 0 0 0 0 0 6 35259533 35288949 29417 + ZNF76-208 REF havana FALSE 0 0 0 1 0 0 0 0 6 35259537 35295981 36445 + ZNF76-SL1 NC STEINMETZLAB FALSE 1 0 3 1 2 1 2 0 6 35259538 35295983 36446 + ZNF76-SL2 NC STEINMETZLAB FALSE 2 1 1 3 2 2 0 1 6 35259737 35295982 36246 + ZNF76-203 REF ensembl_havana FALSE 0 1 9 4 8 11 8 1 6 35259740 35295981 36242 + ZNF76-202 REF havana FALSE 3 2 2 3 14 6 3 0 6 35292039 35295983 3945 + ZNF76-206 REF havana FALSE 0 0 0 0 0 0 1 0 6 35342572 35356855 14284 + PPARD-SL1 ASS STEINMETZLAB FALSE 1 0 1 2 0 2 1 1 6 35342575 35358430 15856 + PPARD-SL2 NE STEINMETZLAB FALSE 0 0 1 0 0 2 0 0 6 35342584 35426400 83817 + PPARD-203 REF ensembl FALSE 1 0 4 2 3 4 1 2 6 35342600 35356846 14247 + PPARD-SL3 NE STEINMETZLAB FALSE 0 0 0 0 0 1 1 1 6 35452384 35466678 14295 + FANCE-201 REF ensembl_havana FALSE 2 1 0 0 1 0 1 3 6 35452670 35467097 14428 + FANCE-SL1 ES STEINMETZLAB FALSE 0 0 2 0 0 3 0 0 6 35468406 35470776 2371 + RPL10A-204 REF havana FALSE 0 2 1 0 7 5 4 2 6 35468406 35470776 2371 + RPL10A-205 REF havana FALSE 0 1 0 0 0 0 0 1 6 35468406 35470778 2373 + RPL10A-203 REF havana FALSE 4 6 6 0 8 9 4 1 6 35468407 35470778 2372 + RPL10A-201 REF ensembl_havana FALSE 109 145 253 126 409 347 207 175 6 35468797 35470778 1982 + RPL10A-202 REF havana FALSE 21 20 38 20 69 49 40 41 6 36027818 36110000 82183 + MAPK14-201 REF ensembl_havana FALSE 3 2 3 1 3 3 4 7 6 36027821 36097875 70055 + MAPK14-209 REF havana FALSE 0 0 0 0 0 1 0 0 6 36029046 36078851 49806 + MAPK14-205 REF havana FALSE 0 0 0 0 0 0 1 0 6 36197396 36201732 4337 + BRPF3-207 REF havana FALSE 0 0 0 0 0 3 0 0 6 36443012 36490538 47527 + KCTD20-206 REF havana FALSE 0 0 0 0 0 2 0 0 6 36443018 36490534 47517 + KCTD20-202 REF ensembl_havana FALSE 19 4 8 7 4 12 4 6 6 36443031 36490536 47506 + KCTD20-210;KCTD20-201 REF ensembl;havana FALSE 2 1 0 1 0 2 0 2 6 36594367 36602780 8414 + SRSF3-202 REF ensembl_havana FALSE 89 113 204 89 190 301 149 128 6 36594368 36602782 8415 + SRSF3-203 REF havana FALSE 5 3 12 9 10 18 6 4 6 36594369 36596946 2578 + SRSF3-206 REF havana FALSE 2 0 1 1 0 0 1 0 6 36594370 36600249 5880 + SRSF3-201 REF havana FALSE 2 1 2 0 0 0 0 0 6 36601026 36602914 1889 + SRSF3-207 REF havana FALSE 3 9 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513 535 6 44247104 44253877 6774 + HSP90AB1-201 REF ensembl_havana FALSE 3 3 1 5 4 8 3 2 6 44247596 44253873 6278 + HSP90AB1-202 REF havana FALSE 5 3 3 1 5 4 1 2 6 44387710 44447031 59322 + CDC5L-201 REF ensembl_havana FALSE 30 26 37 32 47 54 25 23 6 44387712 44447020 59309 + CDC5L-SL1 ES STEINMETZLAB FALSE 0 0 1 1 1 0 0 4 6 46130059 46145398 15340 + ENPP4-201 REF ensembl_havana FALSE 8 6 5 7 7 8 12 3 6 46652988 46677010 24023 + SLC25A27-SL1 NC STEINMETZLAB FALSE 1 1 0 3 2 2 2 1 6 46653014 46677010 23997 + SLC25A27-201 REF ensembl_havana FALSE 0 0 0 1 2 3 0 0 6 46657320 46677012 19693 + SLC25A27-SL2 NC STEINMETZLAB FALSE 0 1 0 1 0 2 1 0 6 47478190 47626948 148759 + CD2AP-201 REF ensembl_havana FALSE 1 0 1 1 2 0 2 0 6 47533487 47546150 12664 + CD2AP-203 REF havana FALSE 0 0 1 0 0 0 0 0 6 49463381 49493036 29656 + CENPQ-201 REF ensembl_havana FALSE 1 0 3 5 5 7 9 3 6 52362150 52406136 43987 + PAQR8-202 REF ensembl_havana FALSE 7 3 3 6 10 6 3 6 6 52420300 52492420 72121 + EFHC1-232 REF 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STEINMETZLAB FALSE 0 0 0 0 2 2 0 1 6 70566932 70589562 22631 + SDHAF4-SL2 ASS STEINMETZLAB FALSE 0 0 1 0 0 2 0 0 6 70667898 70861170 193273 + SMAP1-203 REF ensembl_havana FALSE 20 23 44 36 49 75 37 33 6 70668601 70861173 192573 + SMAP1-206 REF ensembl FALSE 0 1 2 1 4 1 1 0 6 73263228 73276491 13264 + AC019205.2-201 REF havana FALSE 0 0 0 0 1 0 0 0 6 73461744 73501095 39352 + MTO1-SL1 NC STEINMETZLAB FALSE 2 0 7 1 3 2 1 0 6 73461745 73501087 39343 + MTO1-SL3 NC STEINMETZLAB FALSE 1 1 3 1 1 0 0 1 6 73461747 73501099 39353 + MTO1-208 REF havana FALSE 0 0 0 0 0 1 0 0 6 73461758 73501093 39336 + MTO1-SL2 NC STEINMETZLAB FALSE 0 1 0 0 3 2 2 1 6 73461760 73501093 39334 + MTO1-212 REF havana FALSE 9 6 13 5 15 18 7 14 6 73461783 73501088 39306 + MTO1-204 REF havana FALSE 0 0 0 0 0 1 1 1 6 73461784 73501099 39316 + MTO1-205 REF ensembl_havana FALSE 0 0 0 0 0 2 0 0 6 75601884 75679790 77907 + SENP6-201 REF havana FALSE 0 0 0 1 0 1 0 0 6 75602028 75715906 113879 + SENP6-202 REF ensembl_havana FALSE 1 0 0 0 1 0 0 2 6 75602036 75715900 113865 + SENP6-205 REF ensembl_havana FALSE 1 0 1 0 3 0 0 1 6 75602113 75634800 32688 + SENP6-211 REF havana FALSE 0 0 1 0 0 0 0 0 6 75647577 75664235 16659 + SENP6-209 REF havana FALSE 0 0 0 1 0 0 0 0 6 78867524 78946325 78802 + IRAK1BP1-202 REF havana FALSE 0 0 0 0 0 2 0 0 6 78867557 78898294 30738 + IRAK1BP1-201 REF ensembl_havana FALSE 0 0 2 1 1 1 0 0 6 79233724 79235944 2221 + HMGN3-AS1-201 REF havana FALSE 0 1 2 5 1 0 0 0 6 79537612 79703642 166031 + SH3BGRL2-SL1 NE STEINMETZLAB TRUE 1 3 1 0 2 1 0 1 6 79631310 79702504 71195 + SH3BGRL2-201 REF ensembl_havana FALSE 15 11 8 12 8 15 5 3 6 80004654 80042517 37864 + TTK-202 REF havana FALSE 6 2 10 5 12 11 1 9 6 80004660 80042518 37859 + TTK-201 REF ensembl_havana FALSE 1 2 0 0 1 2 1 2 6 80106678 80463196 356519 + BCKDHB-SL1 ES STEINMETZLAB TRUE 0 0 0 1 0 1 0 1 6 80106680 80346268 239589 + BCKDHB-201 REF ensembl_havana FALSE 6 2 4 5 13 15 4 5 6 80106681 80346268 239588 + BCKDHB-202 REF ensembl_havana FALSE 2 6 7 4 9 11 11 1 6 82363823 82366902 3080 + TPBG-201 REF havana FALSE 0 0 0 1 0 2 2 0 6 83193369 83196534 3166 + RWDD2A-SL1 NE STEINMETZLAB FALSE 1 1 2 1 2 3 0 2 6 83193371 83196535 3165 + RWDD2A-201 REF ensembl_havana FALSE 12 11 20 12 19 19 20 9 6 83512537 83525696 13160 + PRSS35-SL1 NE STEINMETZLAB FALSE 8 12 5 14 19 20 10 7 6 83512537 83525697 13161 + PRSS35-201 REF ensembl_havana FALSE 142 121 114 120 157 222 126 113 6 83859680 83960422 100743 + CYB5R4-202 REF ensembl_havana FALSE 2 2 0 4 3 2 1 4 6 87155572 87224447 68876 + ZNF292-203 REF havana FALSE 1 0 0 1 0 4 1 2 6 87155572 87256622 101051 + ZNF292-201 REF havana FALSE 0 0 1 0 0 0 0 2 6 87155577 87256620 101044 + ZNF292-202 REF ensembl_havana FALSE 61 78 131 101 126 263 85 104 6 87322601 87341746 19146 + SMIM8-201 REF ensembl_havana FALSE 7 10 8 10 23 18 15 8 6 87356195 87366993 10799 + C6orf163-201 REF havana FALSE 0 0 1 0 0 0 0 0 6 87374348 87399742 25395 + SMIM8-SL1 ES STEINMETZLAB FALSE 1 0 0 0 3 0 0 1 6 87398260 87399741 1482 + SMIM8-202 REF havana FALSE 0 0 0 0 1 0 0 0 6 87407972 87464441 56470 + CFAP206-202 REF ensembl_havana FALSE 0 1 1 0 0 0 0 0 6 87472978 87512248 39271 + SLC35A1-202 REF ensembl FALSE 0 0 0 0 0 0 1 0 6 87472987 87512323 39337 + SLC35A1-201 REF ensembl_havana FALSE 15 12 21 13 24 30 13 11 6 87472996 87512264 39269 + SLC35A1-SL1 ASS STEINMETZLAB FALSE 0 2 2 1 1 0 1 0 6 87590137 87667442 77306 + ORC3-206 REF ensembl FALSE 0 0 0 0 0 1 0 0 6 87590137 87667442 77306 + ORC3-202 REF havana FALSE 10 13 16 12 28 36 15 14 6 87590141 87667443 77303 + ORC3-201 REF ensembl_havana FALSE 0 0 0 1 0 0 0 0 6 87590148 87595438 5291 + ORC3-203 REF havana FALSE 0 0 0 1 1 2 0 0 6 89080756 89084827 4072 + PNRC1-203 REF havana FALSE 2 8 5 5 4 15 8 4 6 89080761 89084827 4067 + PNRC1-201 REF ensembl_havana FALSE 7 24 48 22 33 66 35 50 6 89081821 89084827 3007 + PNRC1-SL1 ASS STEINMETZLAB FALSE 1 0 4 0 2 6 2 3 6 89081934 89084821 2888 + PNRC1-202 REF ensembl_havana FALSE 0 1 1 0 0 0 1 1 6 89146098 89163820 17723 + PM20D2-SL1 ASS STEINMETZLAB FALSE 0 0 0 0 1 2 0 4 6 89146100 89164918 18819 + PM20D2-201 REF ensembl_havana FALSE 2 4 1 0 4 7 1 1 6 89146176 89163682 17507 + PM20D2-SL2 NE STEINMETZLAB FALSE 0 0 1 0 1 0 0 2 6 89829881 89863144 33264 + CASP8AP2-SL4 NE STEINMETZLAB FALSE 0 0 0 0 0 3 0 0 6 89829896 89863129 33234 + CASP8AP2-206 REF havana FALSE 0 0 1 0 2 2 1 0 6 89829909 89862742 32834 + CASP8AP2-SL1 ASS STEINMETZLAB FALSE 0 2 2 0 1 1 3 0 6 89829910 89863110 33201 + CASP8AP2-202 REF havana FALSE 1 5 7 14 8 19 4 2 6 89829922 89863120 33199 + CASP8AP2-SL2 ES STEINMETZLAB FALSE 0 0 1 0 2 1 1 1 6 89868078 89874432 6355 + CASP8AP2-SL3 ASS STEINMETZLAB FALSE 0 0 1 1 0 0 1 2 6 95577493 95587796 10304 + MANEA-202 REF ensembl_havana FALSE 0 0 0 0 1 0 0 0 6 95577536 95607716 30181 + MANEA-201 REF ensembl_havana FALSE 3 3 4 1 14 5 6 2 6 96521839 96555266 33428 + UFL1-201 REF ensembl_havana FALSE 4 3 1 0 2 2 1 2 6 99425496 99432315 6820 + AL513550.1-201 REF havana FALSE 0 4 2 1 1 4 5 1 6 99521024 99531908 10885 + TSTD3-SL1 ES STEINMETZLAB FALSE 0 0 1 0 1 3 4 1 6 99521035 99531912 10878 + TSTD3-202 REF havana FALSE 0 0 1 0 0 0 0 0 6 99521035 99532235 11201 + TSTD3-201 REF ensembl_havana FALSE 2 2 2 1 2 4 1 1 6 99521052 99584912 63861 + TSTD3-SL2 MN STEINMETZLAB FALSE 0 0 0 2 0 0 1 0 6 105136402 105169934 33533 + BVES-AS1-SL1 ES STEINMETZLAB FALSE 0 0 0 1 1 1 0 0 6 105136438 105169554 33117 + BVES-AS1-203 REF havana FALSE 0 1 1 0 0 1 0 0 6 105137299 105169947 32649 + BVES-AS1-204 REF havana FALSE 0 0 0 0 1 0 0 0 6 106629582 106653478 23897 + QRSL1-201 REF havana FALSE 6 1 13 11 4 6 12 3 6 106629585 106666349 36765 + QRSL1-202 REF ensembl_havana FALSE 7 10 15 21 27 43 13 19 6 107028214 107051336 23123 + C6orf203-201 REF havana FALSE 2 10 6 8 12 15 7 5 6 107028360 107051336 22977 + C6orf203-202 REF ensembl_havana FALSE 2 2 1 1 3 7 2 3 6 107028369 107051336 22968 + C6orf203-SL1 ASS STEINMETZLAB FALSE 1 0 0 0 2 2 0 1 6 107028379 107051338 22960 + C6orf203-204 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55717777 55758771 40995 + RRAGB-202 REF ensembl_havana FALSE 0 2 3 2 5 4 3 4 X 55730971 55751725 20755 + RRAGB-204 REF havana FALSE 0 0 1 0 0 0 0 0 X 55753540 55758692 5153 + RRAGB-205 REF havana FALSE 0 0 0 0 0 1 0 0 X 55908267 56015161 106895 + AL445472.1-201 REF havana FALSE 0 2 1 0 0 0 0 0 X 56618393 56625657 7265 + AL354793.1-201 REF havana FALSE 0 0 1 2 1 1 0 2 X 56729238 56817547 88310 + NBDY-203 REF havana FALSE 0 0 0 1 0 0 0 0 X 56729268 56817569 88302 + NBDY-201 REF ensembl_havana FALSE 103 169 216 134 194 245 152 119 X 56729274 56817569 88296 + NBDY-202 REF havana FALSE 0 4 0 0 2 0 2 1 X 56729276 56817570 88295 + NBDY-204 REF havana FALSE 0 0 3 5 3 5 1 1 X 57286712 57489192 202481 + FAAH2-SL1 ES STEINMETZLAB FALSE 0 0 0 0 0 1 1 1 X 57286867 57489192 202326 + FAAH2-201 REF ensembl_havana FALSE 2 2 2 0 5 6 2 3 X 65667678 65741928 74251 + MSN-201 REF ensembl_havana FALSE 30 16 17 24 30 24 16 14 X 66164236 66267385 103150 + HEPH-203 REF ensembl_havana FALSE 5 2 1 0 2 1 3 6 X 66164243 66267380 103138 + HEPH-SL2 ES STEINMETZLAB FALSE 0 1 0 1 0 8 1 1 X 66164243 66267382 103140 + HEPH-SL4 ES STEINMETZLAB FALSE 1 0 0 3 0 0 0 0 X 66164243 66267384 103142 + HEPH-206 REF ensembl_havana FALSE 17 12 18 22 17 14 8 6 X 66164249 66267381 103133 + HEPH-SL3 ES STEINMETZLAB FALSE 2 0 4 2 2 2 0 1 X 66164252 66267384 103133 + HEPH-SL1 ES STEINMETZLAB FALSE 5 1 3 3 3 1 1 1 X 66164254 66173786 9533 + HEPH-207 REF havana FALSE 1 0 0 1 0 0 1 0 X 66170673 66267384 96712 + HEPH-202 REF havana FALSE 0 0 0 0 1 0 0 0 X 67546563 67724276 177714 + AR-201 REF ensembl_havana FALSE 0 0 1 2 0 5 2 0 X 67568942 67724273 155332 + AR-202 REF ensembl_havana FALSE 1 2 3 8 1 1 0 0 X 68499052 68532599 33548 + YIPF6-204 REF ensembl_havana FALSE 45 29 62 48 72 87 57 44 X 68499053 68532598 33546 + YIPF6-202 REF havana FALSE 1 2 3 3 2 1 1 1 X 68499054 68532599 33546 + YIPF6-203;YIPF6-201 REF havana;ensembl FALSE 2 0 1 0 1 0 1 2 X 68829037 68840848 11812 + EFNB1-201 REF ensembl_havana FALSE 2 1 0 4 3 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4 2 X 71291898 71297942 6045 + NONO-209 REF havana FALSE 0 0 2 0 0 3 1 0 X 71301750 71305368 3619 + ITGB1BP2-SL1 NC STEINMETZLAB FALSE 4 9 10 11 11 14 8 4 X 71301751 71305364 3614 + ITGB1BP2-204 REF havana FALSE 1 0 0 1 1 0 0 1 X 71301751 71305368 3618 + ITGB1BP2-201 REF ensembl_havana FALSE 37 46 78 48 95 123 68 59 X 71302136 71305370 3235 + ITGB1BP2-205 REF ensembl FALSE 0 0 1 1 3 0 0 0 X 71302339 71305355 3017 + ITGB1BP2-202 REF havana FALSE 0 0 0 1 0 0 0 0 X 71533104 71573801 40698 + OGT-201 REF havana FALSE 2 0 0 0 0 0 1 0 X 71533105 71575885 42781 + OGT-202 REF ensembl_havana FALSE 2 2 4 7 8 10 3 10 X 72069666 72144731 75066 + NHSL2-204 REF havana FALSE 0 0 0 1 0 1 0 0 X 72181765 72197541 15777 + PIN4-203 REF ensembl_havana FALSE 31 43 53 17 68 78 35 31 X 72181765 72198080 16316 + PIN4-201 REF havana FALSE 3 2 2 2 7 3 1 2 X 72181766 72263934 82169 + PIN4-204;PIN4-207 REF ensembl;havana FALSE 0 2 0 0 2 1 0 0 X 73563223 73682683 119461 + CHIC1-201 REF ensembl_havana FALSE 9 3 6 2 5 14 9 10 X 73563291 73682682 119392 + CHIC1-202 REF havana FALSE 0 1 6 5 3 2 2 6 X 73944341 73985601 41261 + JPX-SL2 ASS STEINMETZLAB FALSE 0 0 0 0 0 2 2 0 X 73944342 74004539 60198 + JPX-SL4 NE STEINMETZLAB FALSE 0 0 0 1 1 0 0 1 X 73944343 74004547 60205 + JPX-209 REF havana FALSE 1 2 2 3 2 3 0 0 X 73944344 74004550 60207 + JPX-204 REF havana FALSE 0 0 2 0 6 8 2 0 X 73944344 74004650 60307 + JPX-SL3 NE STEINMETZLAB FALSE 0 1 0 0 1 1 0 2 X 73944346 73945468 1123 + JPX-203 REF havana FALSE 0 0 1 0 1 1 1 0 X 73944346 74004539 60194 + JPX-SL5 IR STEINMETZLAB FALSE 0 0 1 0 1 0 1 0 X 73944347 73999777 55431 + JPX-210 REF havana FALSE 3 3 5 1 4 5 2 0 X 73944347 74004546 60200 + JPX-SL1 NE STEINMETZLAB FALSE 0 3 5 1 4 2 4 1 X 74421530 74532662 111133 + SLC16A2-201 REF ensembl_havana FALSE 4 6 3 2 2 8 2 2 X 75274108 75304596 30489 + UPRT-202 REF havana FALSE 2 4 5 1 3 3 4 2 X 75274120 75304598 30479 + UPRT-203 REF ensembl_havana FALSE 5 12 15 14 13 26 19 15 X 75274177 75304599 30423 + UPRT-SL1 NC STEINMETZLAB FALSE 0 0 0 1 3 1 2 0 X 75274214 75304598 30385 + UPRT-204 REF ensembl_havana FALSE 2 2 4 3 3 5 2 3 X 75274704 75304599 29896 + UPRT-207 REF havana FALSE 2 0 0 1 3 3 0 5 X 75274715 75304596 29882 + UPRT-SL2 NC STEINMETZLAB FALSE 0 0 1 1 1 1 1 1 X 75285427 75304593 19167 + UPRT-206 REF havana FALSE 0 0 1 0 0 0 0 0 X 76173069 76178196 5128 + PBDC1-202 REF ensembl_havana FALSE 22 26 40 23 48 60 28 15 X 76173099 76178197 5099 + PBDC1-201 REF havana FALSE 0 1 1 0 1 2 1 0 X 77899478 77902770 3293 + COX7B-202 REF havana FALSE 0 2 1 1 0 1 0 0 X 77899488 77905382 5895 + COX7B-203 REF ensembl_havana FALSE 691 928 1124 762 1832 1704 966 725 X 77899493 77905382 5890 + COX7B-201 REF havana FALSE 2 3 7 0 6 6 1 0 X 77910665 77964881 54217 + AL356235.1-201 REF havana FALSE 1 0 0 0 0 0 0 2 X 78104254 78126268 22015 + PGK1-201 REF ensembl_havana FALSE 353 479 896 544 1118 1287 619 864 X 78125362 78126269 908 + PGK1-203 REF havana FALSE 2 8 5 5 11 5 7 6 X 81202122 81298541 96420 + SH3BGRL-204 REF havana FALSE 2 0 0 3 1 1 1 0 X 81202125 81298542 96418 + SH3BGRL-201 REF ensembl_havana FALSE 156 178 189 169 152 170 102 90 X 85003886 85087758 83873 + APOOL-201 REF ensembl_havana FALSE 0 0 0 0 0 0 1 0 X 85243992 85273354 29363 + ZNF711-SL1 NC STEINMETZLAB FALSE 3 0 0 1 0 3 0 1 X 85244076 85273346 29271 + ZNF711-203 REF ensembl_havana FALSE 0 1 0 0 0 2 0 0 X 85244095 85273336 29242 + ZNF711-201 REF havana FALSE 1 0 0 1 3 2 1 0 X 87517760 87670045 152286 + KLHL4-201 REF havana FALSE 0 0 0 4 0 1 0 0 X 87517833 87667930 150098 + KLHL4-202 REF ensembl_havana FALSE 12 9 9 21 5 7 4 1 X 91434839 91437699 2861 + PABPC5-201 REF ensembl_havana FALSE 3 10 9 9 12 14 11 9 X 91434840 91438583 3744 + PABPC5-202 REF havana FALSE 0 0 1 0 3 0 2 3 X 91835715 91878841 43127 + PCDH11X-203 REF havana FALSE 0 0 0 0 0 0 0 1 X 93674232 93709748 35517 + FAM133A-202 REF havana FALSE 0 0 1 0 1 0 0 2 X 100584950 100599880 14931 + TNMD-201 REF ensembl_havana FALSE 5 8 6 23 3 2 2 4 X 100820411 100840923 20513 + CSTF2-203 REF ensembl FALSE 1 1 5 4 3 5 2 1 X 100820411 100840929 20519 + CSTF2-201 REF ensembl_havana FALSE 3 10 11 16 16 20 18 12 X 101078884 101096351 17468 + TMEM35A-201 REF ensembl_havana FALSE 13 12 8 12 6 9 2 3 X 101391007 101395416 4410 + RPL36A-202 REF havana FALSE 0 1 0 0 3 0 1 0 X 101391012 101391816 805 + RPL36A-204 REF havana FALSE 0 1 0 0 0 2 0 1 X 101391012 101395793 4782 + RPL36A-203;RPL36A-210;RPL36A-209 REF ensembl_havana;ensembl;havana FALSE 16 30 38 21 79 79 33 19 X 101391024 101414126 23103 + RPL36A-HNRNPH2-201 REF ensembl_havana FALSE 0 0 0 0 0 0 0 1 X 101391479 101395792 4314 + RPL36A-205 REF havana FALSE 3 2 0 2 3 4 0 4 X 101408229 101414124 5896 + HNRNPH2-201 REF ensembl_havana FALSE 196 255 342 274 329 546 307 227 X 101418284 101419179 896 + ARMCX4-209 REF havana FALSE 0 5 5 3 3 14 1 5 X 101550553 101554688 4136 + ARMCX1-201 REF ensembl_havana FALSE 29 48 50 49 54 74 50 34 X 101623164 101626473 3310 + ARMCX3-203 REF havana FALSE 81 71 96 79 119 198 78 91 X 101623170 101626473 3304 + ARMCX3-201 REF ensembl_havana FALSE 32 47 38 34 57 82 44 31 X 101623179 101626476 3298 + ARMCX3-202 REF havana FALSE 3 5 1 9 5 7 5 5 X 101623189 101626473 3285 + ARMCX3-206;ARMCX3-207 REF havana;ensembl FALSE 0 2 1 1 2 6 3 1 X 102599526 102604150 4625 + ARMCX5-204 REF havana FALSE 1 1 0 0 5 2 0 2 X 102599526 102641148 41623 + ARMCX5-GPRASP2-SL1 NC STEINMETZLAB FALSE 0 0 0 0 0 4 0 0 X 102599528 102604152 4625 + ARMCX5-SL1 NC STEINMETZLAB FALSE 3 3 4 3 5 14 8 3 X 102599528 102604153 4626 + ARMCX5-205 REF havana FALSE 7 8 9 7 13 18 14 4 X 102599530 102641145 41616 + ARMCX5-GPRASP2-201 REF havana FALSE 0 1 4 1 2 0 0 0 X 102599532 102604150 4619 + ARMCX5-203 REF havana FALSE 0 0 1 2 0 1 2 0 X 102599612 102650142 50531 + ARMCX5-GPRASP2-204 REF havana FALSE 0 0 1 0 0 0 1 0 X 102601464 102604156 2693 + ARMCX5-202 REF havana FALSE 0 0 0 0 1 1 0 0 X 102651443 102658450 7008 + GPRASP1-203 REF ensembl FALSE 0 0 0 1 2 1 2 1 X 102651483 102658448 6966 + GPRASP1-201 REF ensembl_havana FALSE 0 0 2 1 1 2 0 2 X 102712363 102717734 5372 + GPRASP2-201 REF havana FALSE 0 1 1 0 0 1 0 0 X 102712416 102717729 5314 + GPRASP2-203 REF havana FALSE 1 1 2 4 2 3 2 1 X 102712427 102717729 5303 + GPRASP2-202 REF havana FALSE 17 15 20 9 21 42 17 11 X 102720532 102750964 30433 + BHLHB9-207 REF havana FALSE 0 1 1 1 0 0 0 0 X 102720728 102752435 31708 + BHLHB9-205 REF ensembl FALSE 2 0 1 2 1 5 3 0 X 102720743 102752429 31687 + BHLHB9-206 REF havana FALSE 1 1 2 0 2 0 0 1 X 102746008 102752433 6426 + BHLHB9-203 REF ensembl FALSE 3 3 4 1 8 7 4 5 X 102769176 102886158 116983 + LINC00630-205 REF havana FALSE 0 0 0 1 0 1 0 0 X 103215135 103217190 2056 + BEX4-202 REF ensembl_havana FALSE 164 218 215 173 227 302 201 146 X 103215138 103217190 2053 + BEX4-201 REF ensembl_havana FALSE 3 3 3 2 6 4 3 3 X 103356512 103358452 1941 + TCEAL9-201 REF ensembl FALSE 15 9 24 23 16 37 15 9 X 103356514 103358452 1939 + TCEAL9-202 REF ensembl FALSE 97 120 131 93 160 162 92 70 X 103376512 103378066 1555 + BEX3-203 REF ensembl_havana FALSE 2 1 2 1 2 0 1 0 X 103376539 103378068 1530 + BEX3-204 REF ensembl_havana FALSE 65 77 108 64 166 122 79 59 X 103376540 103378068 1529 + BEX3-201 REF havana FALSE 319 400 467 318 637 656 402 300 X 103377024 103378068 1045 + BEX3-202 REF havana FALSE 21 23 25 21 33 19 18 16 X 103585520 103586854 1335 + TCEAL4-206 REF ensembl_havana FALSE 0 0 4 0 2 2 1 2 X 103585523 103587514 1992 + TCEAL4-208 REF havana FALSE 26 38 51 45 56 78 22 29 X 103585525 103586844 1320 + TCEAL4-211 REF havana FALSE 0 0 1 0 0 0 0 0 X 103585526 103587514 1989 + TCEAL4-213 REF ensembl FALSE 0 0 1 0 1 2 0 0 X 103585527 103586700 1174 + TCEAL4-209 REF havana FALSE 0 1 0 0 1 1 0 0 X 103585535 103587515 1981 + TCEAL4-212 REF havana FALSE 0 1 1 0 3 1 2 0 X 103585551 103587508 1958 + TCEAL4-202 REF havana FALSE 0 0 1 0 0 0 0 0 X 103585896 103586842 947 + TCEAL4-204 REF havana FALSE 1 0 0 0 0 1 0 1 X 103607944 103609906 1963 + TCEAL3-202 REF havana FALSE 4 12 5 10 7 15 3 4 X 103607968 103609903 1936 + TCEAL3-201 REF ensembl FALSE 1 5 0 3 1 3 0 4 X 103628719 103630944 2226 + TCEAL1-203 REF ensembl_havana FALSE 3 2 2 4 2 4 1 2 X 103628938 103630938 2001 + TCEAL1-204 REF havana FALSE 1 0 0 0 1 0 1 0 X 103628941 103630946 2006 + TCEAL1-202 REF ensembl_havana FALSE 1 3 1 1 0 5 3 4 X 103628952 103630944 1993 + TCEAL1-201 REF havana FALSE 4 6 8 1 8 6 5 0 X 103919188 103965972 46785 + TMSB15B-201 REF havana FALSE 2 0 0 1 0 0 2 0 X 103919189 103931650 12462 + TMSB15B-203 REF havana FALSE 2 2 2 0 1 2 0 0 X 103962651 103965974 3324 + TMSB15B-204 REF ensembl FALSE 6 6 13 12 21 21 10 6 X 104112544 104115839 3296 + ZCCHC18-206;ZCCHC18-204 REF ensembl;havana FALSE 1 1 1 0 4 3 1 1 X 104112552 104115840 3289 + ZCCHC18-205 REF havana FALSE 2 0 4 1 0 5 2 0 X 104112556 104115836 3281 + ZCCHC18-201 REF havana FALSE 2 2 2 5 3 4 0 1 X 104166678 104191445 24768 + FAM199X-202 REF ensembl_havana FALSE 2 1 0 0 3 1 1 1 X 106168308 106208952 40645 + MUM1L1-SL1 ASS STEINMETZLAB FALSE 1 0 0 1 3 2 1 3 X 106168312 106208952 40641 + MUM1L1-202 REF ensembl_havana FALSE 14 6 8 12 17 19 11 14 X 106177326 106207081 29756 + MUM1L1-SL2 ASS STEINMETZLAB FALSE 1 0 3 0 2 1 1 1 X 106201741 106208953 7213 + MUM1L1-203 REF havana FALSE 5 4 4 9 10 8 4 8 X 106611918 106679433 67516 + CXorf57-202 REF ensembl_havana FALSE 0 0 1 0 0 1 0 0 X 106802744 106828051 25308 + TBC1D8B-206 REF havana FALSE 1 0 0 0 0 1 1 0 X 107628514 107651019 22506 + PRPS1-204 REF ensembl_havana FALSE 1 1 5 4 19 4 6 3 X 107628515 107643295 14781 + PRPS1-202 REF havana FALSE 1 0 0 0 2 0 1 0 X 108091788 108154659 62872 + ATG4A-203 REF ensembl_havana FALSE 8 13 11 8 8 10 5 8 X 108091810 108154662 62853 + ATG4A-204 REF havana FALSE 1 0 2 0 2 2 3 0 X 108091815 108154661 62847 + ATG4A-202 REF ensembl_havana FALSE 0 0 0 0 0 0 0 1 X 108148626 108154420 5795 + ATG4A-208 REF havana FALSE 0 0 0 0 1 0 0 1 X 108439838 108569456 129619 + COL4A5-203 REF havana FALSE 0 1 4 3 2 3 0 2 X 108439857 108571999 132143 + COL4A5-SL1 IR STEINMETZLAB FALSE 1 0 0 1 1 0 2 1 X 109536861 109544686 7826 + NXT2-203 REF havana FALSE 1 0 1 1 2 1 0 2 X 109537216 109544685 7470 + NXT2-202 REF ensembl_havana FALSE 1 0 0 0 0 4 1 1 X 110002678 110174010 171333 + TMEM164-203 REF ensembl FALSE 2 3 0 0 1 3 1 0 X 110002723 110003739 1017 + TMEM164-208 REF havana FALSE 0 0 0 1 0 0 0 0 X 110003095 110174010 170916 + TMEM164-204 REF havana FALSE 0 1 5 4 1 0 2 3 X 110003114 110174013 170900 + TMEM164-202 REF ensembl FALSE 2 6 3 4 5 11 4 0 X 111511684 111521672 9989 + SERTM2-202 REF havana FALSE 5 0 3 0 8 7 12 5 X 111511757 111521860 10104 + SERTM2-201 REF havana FALSE 0 0 1 0 1 0 0 0 X 111681171 111689270 8100 + ALG13-213 REF havana FALSE 0 1 1 0 1 1 0 0 X 111681188 111688786 7599 + ALG13-207 REF havana FALSE 1 2 6 1 3 3 0 0 X 111681192 111688788 7597 + ALG13-SL1 NC STEINMETZLAB FALSE 2 0 0 1 1 0 1 1 X 111681192 111688794 7603 + ALG13-202 REF ensembl_havana FALSE 4 3 0 5 7 7 1 4 X 111681193 111687851 6659 + ALG13-226 REF havana FALSE 0 2 1 0 1 1 0 0 X 111681674 111688778 7105 + ALG13-214 REF ensembl_havana FALSE 0 0 0 0 0 1 0 0 X 111752788 111760643 7856 + ALG13-215 REF havana FALSE 0 1 0 0 0 1 0 0 X 111757586 111760619 3034 + ALG13-219 REF havana FALSE 1 0 1 1 0 0 0 0 X 115561182 115650667 89486 + PLS3-202 REF ensembl_havana FALSE 35 15 11 15 20 23 13 15 X 115561191 115650667 89477 + PLS3-SL2 NC STEINMETZLAB FALSE 0 0 0 1 0 1 1 0 X 115593251 115650662 57412 + PLS3-SL1 ASS STEINMETZLAB FALSE 0 0 0 0 5 0 0 0 X 115593514 115650659 57146 + PLS3-209 REF ensembl_havana FALSE 0 1 0 0 0 1 0 0 X 118346095 118449930 103836 + WDR44-201 REF ensembl_havana FALSE 2 1 1 2 2 1 0 3 X 118823831 118826964 3134 + ZCCHC12-201 REF ensembl_havana FALSE 1 1 1 4 0 1 0 1 X 119236294 119244462 8169 + PGRMC1-201 REF ensembl_havana FALSE 99 138 178 116 171 210 115 120 X 119236352 119244463 8112 + PGRMC1-202 REF ensembl FALSE 0 0 0 1 0 0 0 0 X 119399381 119454467 55087 + SLC25A43-201 REF ensembl_havana FALSE 0 0 1 1 0 1 0 0 X 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1 0 X 130401989 130413339 11351 + RBMX2-201 REF ensembl_havana FALSE 2 0 2 5 0 3 2 0 X 130402257 130411523 9267 + RBMX2-203 REF havana FALSE 0 0 1 2 3 1 1 1 X 130411455 130413332 1878 + RBMX2-204 REF havana FALSE 1 0 0 0 0 1 0 0 X 132023302 132075939 52638 + STK26-202 REF ensembl_havana FALSE 8 2 1 7 5 10 1 3 X 132023306 132075018 51713 + STK26-203 REF ensembl_havana FALSE 0 0 0 0 1 1 0 0 X 132023336 132075941 52606 + STK26-201 REF havana FALSE 0 0 1 0 0 0 0 0 X 132218243 132432801 214559 + RAP2C-AS1-202 REF havana FALSE 0 1 1 1 0 1 3 2 X 134237236 134246200 8965 + CCDC160-SL1 ASS STEINMETZLAB FALSE 0 0 2 0 6 4 3 3 X 134237240 134246200 8961 + CCDC160-201 REF ensembl FALSE 4 4 7 5 0 7 4 2 X 134373334 134415110 41777 + PHF6-203 REF havana FALSE 1 0 1 3 3 2 3 2 X 134373341 134428782 55442 + PHF6-SL2 ES STEINMETZLAB FALSE 0 0 1 0 0 2 0 0 X 134373343 134428786 55444 + PHF6-204 REF havana FALSE 4 4 13 2 8 10 6 10 X 134373344 134428785 55442 + PHF6-201 REF ensembl_havana FALSE 3 0 5 2 6 3 2 3 X 134373344 134428787 55444 + PHF6-SL1 ES STEINMETZLAB FALSE 0 0 1 1 1 0 1 0 X 134460198 134500662 40465 + HPRT1-201 REF ensembl_havana FALSE 14 17 24 26 42 49 27 22 X 134807135 134811178 4044 + FAM122C-207 REF ensembl_havana FALSE 0 1 1 0 0 1 1 0 X 134807217 134811172 3956 + FAM122C-208 REF havana FALSE 0 1 1 0 1 1 0 2 X 134807252 134821748 14497 + FAM122C-211;FAM122C-210 REF ensembl;havana FALSE 0 4 1 0 0 0 1 0 X 134807256 134854576 47321 + FAM122C-201 REF ensembl FALSE 0 0 0 1 0 0 0 0 X 135032336 135033538 1203 + RTL8C-202 REF ensembl_havana FALSE 0 1 0 0 0 1 0 0 X 135344799 135350387 5589 + ZNF449-202 REF havana FALSE 2 1 0 1 2 1 1 1 X 135344801 135363137 18337 + ZNF449-201 REF ensembl_havana FALSE 2 3 2 7 7 11 6 2 X 135344804 135363145 18342 + ZNF449-SL1 IR STEINMETZLAB FALSE 1 0 1 3 0 1 2 0 X 135520661 135582500 61840 + INTS6L-SL2 NC STEINMETZLAB FALSE 1 1 0 0 1 2 0 0 X 135520662 135582501 61840 + INTS6L-SL1 NC STEINMETZLAB FALSE 0 4 1 1 1 1 1 1 X 135520664 135582500 61837 + INTS6L-206 REF havana FALSE 0 1 0 1 2 4 1 0 X 135520666 135582501 61836 + INTS6L-201 REF ensembl_havana FALSE 0 2 2 1 3 0 1 0 X 135985446 136047119 61674 + SLC9A6-203 REF ensembl_havana FALSE 1 1 1 0 0 1 1 0 X 135985500 136047119 61620 + SLC9A6-201;SLC9A6-208 REF ensembl;havana FALSE 0 2 2 1 5 1 0 0 X 136146839 136211349 64511 + FHL1-229 REF havana FALSE 6 4 4 11 1 3 2 0 X 136147534 136211349 63816 + FHL1-207 REF ensembl FALSE 22 20 21 18 17 15 7 9 X 136147536 136211349 63814 + FHL1-SL1 IR STEINMETZLAB FALSE 20 17 17 12 8 6 7 5 X 136147536 136211349 63814 + FHL1-205 REF havana FALSE 425 337 298 368 215 275 144 115 X 136147541 136211349 63809 + FHL1-219 REF ensembl_havana FALSE 5 3 6 4 1 3 0 3 X 136147754 136208579 60826 + FHL1-208 REF havana FALSE 0 0 1 0 0 0 0 0 X 136148582 136211350 62769 + FHL1-230 REF ensembl_havana FALSE 5 0 0 2 1 0 1 1 X 136169708 136211349 41642 + FHL1-206 REF ensembl FALSE 0 0 2 0 1 0 1 1 X 136169778 136211347 41570 + FHL1-218 REF ensembl_havana FALSE 11 2 10 6 8 8 8 4 X 136169822 136211352 41531 + FHL1-201 REF havana FALSE 1 1 0 0 0 1 1 0 X 136197052 136211344 14293 + FHL1-203 REF havana FALSE 0 1 0 2 0 0 0 1 X 136197052 136211349 14298 + FHL1-204 REF ensembl_havana FALSE 163 96 53 148 30 39 13 22 X 136197053 136207152 10100 + FHL1-215 REF havana FALSE 1 0 0 1 0 0 0 0 X 136209363 136211351 1989 + FHL1-232 REF havana FALSE 0 0 1 1 0 0 0 1 X 136497232 136502860 5629 + HTATSF1-202 REF havana FALSE 0 0 0 1 1 0 0 0 X 136497238 136512332 15095 + HTATSF1-SL1 NC STEINMETZLAB FALSE 1 2 3 3 8 6 7 6 X 136497238 136512334 15097 + HTATSF1-204 REF ensembl FALSE 7 2 10 12 13 25 12 10 X 136497246 136502908 5663 + HTATSF1-203 REF havana FALSE 0 1 1 0 0 0 0 0 X 136497576 136512335 14760 + HTATSF1-201 REF havana FALSE 25 32 47 27 48 52 33 37 X 137566514 137572094 5581 + ZIC3-201 REF ensembl_havana FALSE 0 1 2 0 0 0 0 0 X 138711505 138718056 6552 + FGF13-AS1-202 REF havana FALSE 1 0 1 0 0 0 2 0 X 147912143 147950635 38493 + FMR1-207 REF havana FALSE 0 0 0 1 0 0 0 0 X 147912165 147951106 38942 + FMR1-201 REF ensembl FALSE 0 0 0 0 0 1 0 0 X 147943105 147945899 2795 + FMR1-211 REF havana FALSE 0 0 0 0 0 0 1 0 X 149540658 149547306 6649 + CXorf40A-211 REF havana FALSE 1 3 2 0 0 1 0 2 X 149540891 149547303 6413 + CXorf40A-SL1 ASS STEINMETZLAB FALSE 0 0 0 0 0 1 0 2 X 149541034 149547307 6274 + CXorf40A-202 REF ensembl_havana FALSE 0 0 1 1 1 5 3 1 X 149541034 149547307 6274 + CXorf40A-204 REF havana FALSE 4 4 3 1 6 12 4 6 X 149541035 149549950 8916 + CXorf40A-208 REF havana FALSE 0 0 1 0 0 1 0 0 X 149541096 149547305 6210 + CXorf40A-205 REF havana FALSE 0 0 3 0 0 1 0 0 X 150361574 150470599 109026 + MAMLD1-207 REF havana FALSE 0 0 0 0 0 0 1 0 X 150508811 150513183 4373 + MAMLD1-206 REF havana FALSE 1 0 0 0 0 0 2 0 X 150568621 150671577 102957 + MTM1-203 REF ensembl_havana FALSE 3 1 3 4 4 5 5 1 X 150568625 150597924 29300 + MTM1-202 REF havana FALSE 0 0 1 0 0 0 2 0 X 150983330 150988764 5435 + HMGB3-201 REF ensembl_havana FALSE 19 28 35 22 57 67 27 31 X 150983560 150988770 5211 + HMGB3-205;HMGB3-204 REF havana;ensembl FALSE 0 1 0 0 0 1 0 1 X 150985591 150987210 1620 + HMGB3-203 REF havana FALSE 0 1 2 1 0 1 1 0 X 151397217 151405163 7947 + VMA21-201 REF ensembl_havana FALSE 26 16 25 13 28 27 21 6 X 152831046 152869361 38316 + NSDHL-201 REF ensembl_havana FALSE 16 27 33 25 56 81 46 25 X 152831056 152869359 38304 + NSDHL-203 REF ensembl FALSE 1 0 2 0 4 4 2 4 X 152941695 152973471 31777 + ZNF185-210 REF ensembl_havana FALSE 1 0 1 1 3 1 3 2 X 153345455 153351579 6125 + ZNF275-201 REF havana FALSE 0 0 0 0 1 0 0 0 X 153494982 153508905 13924 + BGN-201 REF ensembl_havana FALSE 11 4 3 0 3 1 0 1 X 153724831 153729892 5062 + ABCD1-202 REF havana FALSE 0 0 0 0 1 0 0 0 X 153724922 153744736 19815 + ABCD1-201 REF ensembl_havana FALSE 1 1 0 0 0 0 0 3 X 153781046 153785727 4682 + SRPK3-203 REF ensembl_havana FALSE 3 1 3 1 1 1 0 2 X 153794176 153798492 4317 + SSR4-204 REF ensembl_havana FALSE 0 0 0 0 2 0 0 0 X 153794500 153798496 3997 + SSR4-201 REF ensembl_havana FALSE 2 1 2 3 7 5 3 4 X 153794665 153798494 3830 + SSR4-203 REF havana FALSE 105 74 148 86 206 176 99 87 X 153794666 153798496 3831 + SSR4-202 REF havana FALSE 0 5 3 0 1 2 0 0 X 153794676 153798497 3822 + SSR4-208 REF havana FALSE 0 0 1 1 2 2 0 0 X 153795300 153798494 3195 + SSR4-206 REF havana FALSE 0 0 1 1 0 0 0 0 X 153796455 153798496 2042 + SSR4-210 REF havana FALSE 0 4 2 1 4 2 4 0 X 153797738 153798494 757 + SSR4-205 REF havana FALSE 0 0 0 0 1 3 0 1 X 153972776 153983187 10412 + TMEM187-201 REF ensembl_havana FALSE 5 6 12 9 7 20 12 8 X 154379279 154380802 1524 + EMD-204 REF havana FALSE 96 62 163 128 57 197 66 62 X 154379287 154381521 2235 + EMD-202 REF ensembl_havana FALSE 2 1 4 0 7 2 3 1 X 154379289 154380796 1508 + EMD-209 REF havana FALSE 4 2 5 1 2 2 2 1 X 154379290 154380803 1514 + EMD-207 REF havana FALSE 5 4 8 6 1 10 4 3 X 154379689 154381520 1832 + EMD-208 REF havana FALSE 0 0 0 0 0 1 0 0 X 154398318 154400911 2594 + RPL10-204 REF ensembl FALSE 25 20 30 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109 136 148 90 79 X 154429070 154436509 7440 + ATP6AP1-209 REF havana FALSE 2 0 3 0 0 0 0 1 X 154431885 154434438 2554 + ATP6AP1-208 REF havana FALSE 0 1 0 1 0 0 0 0 X 154437163 154440189 3027 + GDI1-211 REF havana FALSE 1 0 0 1 1 1 1 1 X 154437168 154442759 5592 + GDI1-204 REF ensembl_havana FALSE 29 38 44 29 38 43 22 22 X 154441631 154442762 1132 + GDI1-207 REF havana FALSE 0 2 0 1 2 4 1 1 X 154442157 154442762 606 + GDI1-206 REF havana FALSE 1 1 3 1 0 3 1 0 X 154444144 154450630 6487 + FAM50A-202 REF ensembl_havana FALSE 7 13 9 7 16 22 7 10 X 154444430 154450646 6217 + FAM50A-SL1 NC STEINMETZLAB FALSE 1 0 1 2 0 1 0 0 X 154547645 154565032 17388 + IKBKG-206 REF ensembl_havana FALSE 1 2 1 1 4 6 1 1 X 154762872 154765273 2402 + DKC1-208 REF havana FALSE 0 0 0 0 0 1 0 0 X 154762878 154777664 14787 + DKC1-201 REF ensembl_havana FALSE 10 11 26 11 42 48 12 17 X 154773182 154776433 3252 + DKC1-210 REF havana FALSE 0 0 0 2 0 0 0 0 X 154775222 154777237 2016 + DKC1-212 REF havana FALSE 0 0 1 0 0 0 0 0 X 155026920 155055104 28185 + FUNDC2-201 REF ensembl_havana FALSE 81 92 117 89 121 173 93 66 X 155033407 155055104 21698 + FUNDC2-206 REF havana FALSE 1 0 0 0 0 0 0 1 X 155051716 155055106 3391 + FUNDC2-207 REF havana FALSE 3 0 2 2 3 3 1 1 X 155071524 155123067 51544 + BRCC3-208 REF havana FALSE 0 0 0 0 1 1 0 0 X 155072030 155079906 7877 + BRCC3-205 REF havana FALSE 0 0 0 0 0 2 0 0 X 155216468 155239810 23343 + VBP1-201 REF ensembl_havana FALSE 81 112 232 144 230 315 156 129 X 155227236 155239809 12574 + VBP1-202 REF havana FALSE 0 0 0 1 0 1 0 0 X 155767780 155774131 6352 + SPRY3-201 REF ensembl_havana FALSE 0 0 2 1 0 1 1 0 X 155881335 155943754 62420 + VAMP7-205 REF havana FALSE 0 1 1 0 1 1 0 0 X 155881341 155943762 62422 + VAMP7-201 REF ensembl_havana FALSE 1 0 2 0 0 1 3 0 X 155881343 155943762 62420 + VAMP7-SL1 NC STEINMETZLAB FALSE 3 1 3 0 6 3 0 1 X 155881348 155943764 62417 + VAMP7-206 REF havana FALSE 2 3 5 3 3 4 8 3 X 155881359 155943762 62404 + VAMP7-203 REF ensembl_havana FALSE 1 2 3 4 2 3 4 0 X 155881359 155943762 62404 + VAMP7-202 REF ensembl_havana FALSE 20 12 35 23 37 57 15 20 X 304759 311536 6778 - GTPBP6-202 REF havana FALSE 0 0 0 0 0 0 1 0 X 304760 318634 13875 - GTPBP6-201 REF ensembl_havana FALSE 2 1 3 0 3 2 1 2 X 334238 386684 52447 - PPP2R3B-202 REF ensembl_havana FALSE 0 1 0 0 0 1 1 0 X 334241 341436 7196 - PPP2R3B-208 REF havana FALSE 0 1 0 0 0 0 0 1 X 334241 373692 39452 - PPP2R3B-SL1 NC STEINMETZLAB FALSE 5 2 5 2 4 5 1 3 X 1386252 1392109 5858 - SLC25A6-201 REF ensembl_havana FALSE 292 468 796 320 961 1367 763 669 X 1387346 1392099 4754 - SLC25A6-202 REF havana FALSE 0 0 1 0 0 0 0 0 X 1403144 1452898 49755 - ASMTL-201 REF ensembl_havana FALSE 2 18 19 11 26 19 10 16 X 1442082 1452873 10792 - ASMTL-205 REF havana FALSE 3 3 1 2 1 2 0 0 X 2220766 2500958 280193 - DHRSX-SL1 ES STEINMETZLAB FALSE 1 3 2 2 4 0 1 1 X 2220767 2500951 280185 - DHRSX-201 REF ensembl_havana FALSE 9 11 16 13 16 20 4 12 X 2220769 2500934 280166 - DHRSX-SL2 NC STEINMETZLAB FALSE 0 0 1 0 1 0 1 2 X 2486436 2500946 14511 - ZBED1-202 REF havana FALSE 0 0 0 0 0 0 0 1 X 2486440 2500950 14511 - ZBED1-203;ZBED1-204 REF ensembl;havana FALSE 8 16 19 18 22 33 16 21 X 2906158 2929298 23141 - ARSD-202 REF ensembl_havana FALSE 1 2 2 3 6 5 2 3 X 2914230 2929339 15110 - ARSD-SL1 NC STEINMETZLAB FALSE 1 1 2 0 0 1 0 1 X 2914234 2929276 15043 - ARSD-201 REF ensembl_havana FALSE 0 0 0 0 0 0 1 0 X 2920395 2929303 8909 - ARSD-205 REF havana FALSE 0 1 1 0 0 1 0 0 X 2934820 2964376 29557 - ARSE-SL1 NC STEINMETZLAB FALSE 0 0 2 0 0 0 1 0 X 3828596 3843905 15310 - BX890604.1-208 REF havana FALSE 0 0 0 0 0 0 0 1 X 5890278 6227084 336807 - NLGN4X-203 REF ensembl FALSE 0 0 0 0 1 2 1 3 X 7048920 7148128 99209 - PUDP-203 REF havana FALSE 0 0 0 0 0 2 0 0 X 7048922 7148130 99209 - PUDP-201 REF ensembl_havana FALSE 14 32 62 25 46 68 41 37 X 7898894 7927409 28516 - PNPLA4-SL1 ES STEINMETZLAB FALSE 0 0 2 0 0 1 0 0 X 7898895 7927405 28511 - PNPLA4-SL2 ASS STEINMETZLAB FALSE 1 0 0 1 2 0 0 0 X 7900664 7927398 26735 - PNPLA4-201 REF ensembl_havana FALSE 12 10 14 13 24 21 8 10 X 7900664 7927724 27061 - PNPLA4-203 REF ensembl FALSE 0 3 2 1 0 5 3 1 X 7900664 7927728 27065 - PNPLA4-204 REF ensembl FALSE 0 0 0 1 0 0 0 0 X 8532218 8732137 199920 - ANOS1-201 REF ensembl_havana FALSE 0 1 0 1 0 0 0 0 X 10448126 10460086 11961 - MID1-210 REF havana FALSE 2 2 0 2 0 3 0 1 X 10448126 10620532 172407 - MID1-SL2 NC STEINMETZLAB FALSE 0 0 0 1 1 1 1 0 X 10448127 10620520 172394 - MID1-201 REF ensembl FALSE 8 6 13 18 19 15 6 10 X 10448131 10620504 172374 - MID1-SL1 NE STEINMETZLAB FALSE 0 1 2 1 0 1 0 2 X 10565842 10620536 54695 - MID1-208 REF havana FALSE 0 1 3 1 1 5 3 0 X 13712248 13734590 22343 - TRAPPC2-201 REF ensembl FALSE 4 1 3 4 3 5 6 3 X 13712249 13734606 22358 - TRAPPC2-203 REF ensembl_havana FALSE 0 2 2 2 0 2 0 1 X 13771033 13938647 167615 - GPM6B-SL1 NC STEINMETZLAB FALSE 3 3 11 5 14 7 5 4 X 13773974 13938399 164426 - GPM6B-204 REF havana FALSE 0 0 0 1 0 0 0 0 X 13773982 13938647 164666 - GPM6B-205 REF ensembl_havana FALSE 7 11 14 16 9 15 15 14 X 14006729 14029875 23147 - GEMIN8-SL2 ASS STEINMETZLAB FALSE 1 2 1 0 2 0 0 0 X 14008673 14029871 21199 - GEMIN8-203 REF ensembl_havana FALSE 2 1 4 0 1 3 6 2 X 14008675 14029872 21198 - GEMIN8-SL1 NC STEINMETZLAB FALSE 7 11 11 7 9 8 9 4 X 14008684 14029860 21177 - GEMIN8-202 REF ensembl_havana FALSE 1 0 0 0 0 1 1 1 X 14843408 14873057 29650 - FANCB-202;FANCB-203 REF ensembl;havana FALSE 0 0 0 1 0 2 0 0 X 15283037 15315620 32584 - ASB11-203 REF ensembl_havana FALSE 0 1 0 0 2 2 0 1 X 15319457 15335523 16067 - PIGA-209 REF ensembl_havana FALSE 0 0 0 0 0 1 0 0 X 15319459 15325115 5657 - PIGA-202 REF havana FALSE 0 0 2 0 0 0 0 0 X 15319460 15335523 16064 - PIGA-201 REF ensembl_havana FALSE 1 2 1 1 2 2 4 0 X 15319460 15335530 16071 - PIGA-214 REF havana FALSE 0 0 1 3 0 0 0 0 X 15319462 15335546 16085 - PIGA-210 REF havana FALSE 0 0 2 0 2 2 0 1 X 15384804 15493304 108501 - PIR-202 REF ensembl_havana FALSE 1 1 0 1 2 2 0 1 X 15384806 15493298 108493 - PIR-201 REF havana FALSE 8 4 4 6 6 3 4 4 X 15561039 15600944 39906 - ACE2-201 REF havana FALSE 25 12 9 18 10 10 5 6 X 15561040 15600948 39909 - ACE2-SL1 ES STEINMETZLAB FALSE 6 2 0 1 2 1 0 0 X 15627318 15675076 47759 - TMEM27-SL2 ASS STEINMETZLAB FALSE 0 0 0 0 1 2 0 1 X 15627331 15675643 48313 - TMEM27-SL1 ASS STEINMETZLAB FALSE 0 0 2 0 0 2 0 1 X 15826075 15854791 28717 - AP1S2-201 REF ensembl_havana FALSE 58 96 142 101 200 267 149 134 X 15826076 15854791 28716 - AP1S2-SL2 NC STEINMETZLAB FALSE 1 0 7 3 6 11 2 8 X 15826356 15852468 26113 - AP1S2-204 REF havana FALSE 0 0 1 1 0 0 0 1 X 15830054 15852503 22450 - AP1S2-203 REF havana FALSE 0 1 0 0 1 0 1 1 X 15830061 15854796 24736 - AP1S2-SL1 NC STEINMETZLAB FALSE 4 1 14 9 23 30 17 16 X 15830064 15854791 24728 - AP1S2-202 REF havana FALSE 2 1 5 2 13 15 7 3 X 16588008 16591672 3665 - CTPS2-205 REF havana FALSE 0 1 1 0 6 2 4 3 X 16588008 16712404 124397 - CTPS2-201 REF ensembl_havana FALSE 0 0 0 2 0 1 0 1 X 16588327 16712905 124579 - CTPS2-202 REF ensembl_havana FALSE 0 2 5 3 2 3 1 0 X 16588522 16712667 124146 - CTPS2-SL1 ASS STEINMETZLAB FALSE 0 0 1 0 1 3 1 0 X 16844658 16852152 7495 - RBBP7-201 REF havana FALSE 2 1 2 0 0 0 0 0 X 16844659 16869787 25129 - RBBP7-202 REF ensembl_havana FALSE 1 0 2 2 5 3 4 5 X 16844659 16870273 25615 - RBBP7-203 REF ensembl_havana FALSE 86 112 215 127 222 260 133 124 X 16844659 16870280 25622 - RBBP7-204 REF havana FALSE 5 2 6 5 11 15 7 5 X 16868682 16870267 1586 - RBBP7-212 REF havana FALSE 1 2 0 0 1 3 1 1 X 17800054 17861292 61239 - RAI2-204 REF ensembl FALSE 2 2 1 1 0 0 2 0 X 17970134 18104680 134547 - LINC01456-SL1 ASS STEINMETZLAB FALSE 0 0 4 1 0 1 0 0 X 18239316 18354679 115364 - SCML2-SL1 NC STEINMETZLAB FALSE 0 3 4 1 5 2 1 1 X 18239317 18354681 115365 - SCML2-201 REF ensembl_havana FALSE 0 0 0 0 2 5 2 0 X 18892764 18897834 5071 - PHKA2-203 REF havana FALSE 1 1 1 0 0 1 2 3 X 18892868 18983996 91129 - PHKA2-201 REF ensembl_havana FALSE 0 0 1 0 1 0 0 0 X 18892978 18984097 91120 - PHKA2-SL1 NC STEINMETZLAB FALSE 0 0 0 1 0 1 0 1 X 19535714 19569480 33767 - SH3KBP1-SL1 ES STEINMETZLAB FALSE 2 7 6 10 18 14 11 5 X 19535717 19887600 351884 - SH3KBP1-205 REF ensembl_havana FALSE 5 3 2 9 15 7 2 3 X 19535718 19887592 351875 - SH3KBP1-SL2 ES STEINMETZLAB FALSE 3 2 3 4 4 6 0 6 X 19535721 19579073 43353 - SH3KBP1-SL3 ASS STEINMETZLAB FALSE 0 1 0 0 2 3 0 0 X 20127743 20141831 14089 - EIF1AX-202 REF ensembl_havana FALSE 43 57 100 57 97 112 68 63 X 20154117 20266903 112787 - RPS6KA3-201 REF ensembl_havana FALSE 0 0 0 0 0 1 0 0 X 21705983 21758083 52101 - SMPX-201 REF ensembl_havana FALSE 463 492 591 453 737 804 503 384 X 21705984 21758110 52127 - SMPX-202 REF havana FALSE 0 1 2 0 0 1 0 1 X 23703675 23706723 3049 - ACOT9-203 REF havana FALSE 0 0 1 0 0 0 1 0 X 23703675 23743270 39596 - ACOT9-SL1 NC STEINMETZLAB FALSE 0 0 2 1 0 2 0 0 X 23703680 23743264 39585 - ACOT9-208 REF havana FALSE 2 4 3 2 4 2 1 1 X 23703681 23743266 39586 - ACOT9-201 REF ensembl_havana FALSE 8 5 2 10 4 9 2 10 X 23703681 23743274 39594 - ACOT9-204 REF ensembl_havana FALSE 4 3 0 4 2 2 2 3 X 23833366 23880952 47587 - APOO-202 REF havana FALSE 0 1 0 0 1 3 1 0 X 23833366 23907895 74530 - APOO-201 REF ensembl_havana FALSE 11 13 17 12 25 30 22 17 X 23833366 23907896 74531 - APOO-SL1 NC STEINMETZLAB FALSE 6 3 15 11 18 28 14 9 X 24561292 24647204 85913 - PCYT1B-202 REF ensembl_havana FALSE 1 7 10 4 5 15 5 4 X 31119232 31266944 147713 - DMD-SL1 NC STEINMETZLAB FALSE 5 1 2 7 2 3 1 1 X 31119234 31266949 147716 - DMD-208 REF havana FALSE 0 1 0 1 0 2 0 0 X 31119236 31266931 147696 - DMD-206 REF havana FALSE 11 1 2 2 5 4 1 2 X 31119240 31266939 147700 - DMD-209 REF havana FALSE 7 6 2 8 8 3 2 3 X 31119241 31266938 147698 - DMD-212 REF havana FALSE 7 0 6 8 7 10 4 7 X 31120430 31508438 388009 - DMD-202 REF ensembl FALSE 0 0 0 0 0 0 1 0 X 31178444 31182809 4366 - DMD-223 REF havana FALSE 0 0 0 0 0 2 0 0 X 34627322 34657267 29946 - TMEM47-201 REF ensembl_havana FALSE 5 4 5 7 1 4 5 5 X 37838842 37847543 8702 - DYNLT3-201 REF ensembl_havana FALSE 36 24 16 24 20 35 11 11 X 38149346 38220870 71525 - SRPX-206 REF ensembl FALSE 3 1 3 2 2 2 2 0 X 38149346 38220878 71533 - SRPX-205 REF ensembl FALSE 4 5 6 5 3 2 3 2 X 38149347 38220867 71521 - SRPX-201 REF ensembl_havana FALSE 67 71 97 69 65 89 64 52 X 38269348 38327518 58171 - RPGR-201 REF havana FALSE 0 0 0 1 0 1 0 0 X 38269353 38327513 58161 - RPGR-SL1 NC STEINMETZLAB FALSE 1 0 1 1 0 1 0 2 X 40073178 40077971 4794 - BCOR-211 REF havana FALSE 2 3 3 2 5 8 2 0 X 40626924 40647556 20633 - CXorf38-SL1 ASS STEINMETZLAB FALSE 0 0 0 2 0 1 0 0 X 40629033 40647541 18509 - CXorf38-201 REF ensembl_havana FALSE 1 2 5 3 3 5 4 3 X 40653873 40664360 10488 - MED14-203 REF havana FALSE 0 0 1 2 0 0 0 0 X 41519542 41589592 70051 - CASK-206 REF havana FALSE 0 0 0 1 0 0 0 1 X 41520038 41923030 402993 - CASK-207 REF ensembl_havana FALSE 0 1 1 0 0 0 0 0 X 43949692 43973497 23806 - NDP-201 REF ensembl_havana FALSE 0 0 1 3 0 1 0 1 X 44523664 44542104 18441 - FUNDC1-202 REF havana FALSE 0 1 5 5 3 6 5 4 X 44523784 44542854 19071 - FUNDC1-201 REF ensembl_havana FALSE 19 13 18 13 30 18 15 17 X 44523816 44542785 18970 - FUNDC1-SL1 ASS STEINMETZLAB FALSE 0 0 3 1 1 1 0 0 X 46323869 46327630 3762 - LINC01186-201 REF havana FALSE 1 1 0 0 3 0 0 2 X 46522694 46545418 22725 - ZNF674-205 REF havana FALSE 2 0 0 1 0 0 0 0 X 46522822 46545419 22598 - ZNF674-206 REF havana FALSE 0 0 0 0 0 1 0 0 X 47142219 47144690 2472 - NDUFB11-202 REF ensembl_havana FALSE 174 223 344 171 405 517 242 204 X 47142219 47144691 2473 - NDUFB11-201 REF ensembl_havana FALSE 63 97 150 65 211 217 112 115 X 47445069 47482604 37536 - ZNF41-201 REF ensembl_havana FALSE 0 0 0 0 0 1 0 0 X 47445187 47483187 38001 - ZNF41-SL2 ASS STEINMETZLAB FALSE 2 0 2 0 3 1 0 1 X 47445379 47483179 37801 - ZNF41-SL3 ASS STEINMETZLAB FALSE 0 0 1 0 0 2 0 1 X 47446702 47483173 36472 - ZNF41-SL1 ASS STEINMETZLAB FALSE 0 0 1 0 1 1 1 4 X 47635523 47650574 15052 - ELK1-201 REF ensembl_havana FALSE 2 1 0 1 4 5 3 2 X 47635524 47650566 15043 - ELK1-203 REF ensembl_havana FALSE 2 2 1 1 1 0 2 1 X 47651799 47658934 7136 - UXT-205 REF havana FALSE 0 1 2 1 0 0 0 0 X 47651800 47659137 7338 - UXT-201 REF ensembl_havana FALSE 18 28 37 21 64 65 31 36 X 47651801 47658938 7138 - UXT-202 REF ensembl_havana FALSE 18 22 31 15 41 40 34 26 X 47657040 47659151 2112 - UXT-203 REF havana FALSE 0 0 2 0 0 0 0 0 X 47974854 48003986 29133 - ZNF182-202 REF havana FALSE 1 1 0 1 2 0 0 1 X 47974856 48003982 29127 - ZNF182-201 REF ensembl_havana FALSE 1 0 1 0 1 2 1 2 X 47974864 48003983 29120 - ZNF182-SL1 ASS STEINMETZLAB FALSE 2 0 0 1 0 0 0 3 X 48058218 48071629 13412 - ZNF630-205 REF havana FALSE 0 0 0 0 0 2 1 1 X 48059691 48071601 11911 - ZNF630-206 REF ensembl FALSE 1 0 4 0 2 1 3 1 X 48567318 48574876 7559 - AC115618.1-201 REF havana FALSE 1 4 0 0 2 2 1 1 X 48831100 48835581 4482 - PCSK1N-201 REF ensembl_havana FALSE 35 18 33 17 40 15 11 9 X 48893450 48897761 4312 - TIMM17B-204 REF havana FALSE 3 1 3 2 2 3 6 2 X 48893450 48897765 4316 - TIMM17B-208 REF havana FALSE 0 0 0 0 0 0 0 1 X 48903183 48911642 8460 - SLC35A2-205 REF havana FALSE 1 0 5 3 4 5 6 0 X 48903192 48911646 8455 - SLC35A2-201 REF ensembl_havana FALSE 2 3 2 1 5 0 1 0 X 48903618 48911647 8030 - SLC35A2-207 REF havana FALSE 0 0 1 1 2 0 0 1 X 48903620 48911636 8017 - SLC35A2-202 REF havana FALSE 0 0 1 0 0 1 0 0 X 48903620 48911645 8026 - SLC35A2-204 REF havana FALSE 2 1 7 0 2 10 5 3 X 48913186 48919016 5831 - PIM2-201 REF ensembl_havana FALSE 7 4 4 2 4 10 5 12 X 48922228 48957089 34862 - OTUD5-202 REF havana FALSE 0 1 0 0 0 1 0 0 X 48922434 48958378 35945 - OTUD5-204 REF ensembl_havana FALSE 0 0 0 1 0 0 1 0 X 48973727 49002238 28512 - GRIPAP1-201 REF ensembl_havana FALSE 1 1 0 2 1 2 2 2 X 49028741 49043373 14633 - TFE3-201 REF ensembl_havana FALSE 0 0 2 0 1 1 0 0 X 49029490 49031482 1993 - TFE3-205 REF havana FALSE 0 0 0 0 1 0 0 1 X 49071163 49073999 2837 - PRAF2-201 REF havana FALSE 2 0 2 2 1 0 1 3 X 49071164 49073989 2826 - PRAF2-203 REF havana FALSE 0 0 0 0 0 4 0 0 X 49071165 49074000 2836 - PRAF2-202 REF ensembl_havana FALSE 36 39 58 29 82 87 67 41 X 49074443 49079887 5445 - WDR45-201 REF havana FALSE 0 0 1 1 0 0 1 0 X 49074469 49079878 5410 - WDR45-SL1 NC STEINMETZLAB FALSE 1 1 4 5 3 3 0 1 X 49074544 49079880 5337 - WDR45-SL2 NC STEINMETZLAB FALSE 1 1 2 0 3 1 0 3 X 49074643 49079883 5241 - WDR45-207 REF ensembl_havana FALSE 16 11 15 18 23 27 7 16 X 49074643 49079886 5244 - WDR45-224 REF havana FALSE 2 5 4 4 4 5 3 3 X 49074643 49079902 5260 - WDR45-SL3 NC STEINMETZLAB FALSE 0 0 0 0 2 1 0 2 X 49074649 49075462 814 - WDR45-225 REF havana FALSE 0 1 0 0 0 1 0 0 X 49075438 49079880 4443 - WDR45-220 REF havana FALSE 0 0 0 0 0 1 0 0 X 49077038 49079880 2843 - WDR45-232 REF havana FALSE 0 1 0 0 2 0 0 0 X 49113408 49123735 10328 - GPKOW-201 REF ensembl_havana FALSE 7 11 12 15 18 14 10 15 X 49876366 49879293 2928 - USP27X-AS1-201 REF havana FALSE 0 1 3 1 0 2 1 3 X 51490024 51496586 6563 - NUDT11-201 REF ensembl_havana FALSE 18 19 38 16 24 47 22 26 X 52061829 52069196 7368 - MAGED4B-202 REF havana FALSE 0 0 0 0 0 1 0 0 X 52061832 52069182 7351 - MAGED4B-201 REF ensembl_havana FALSE 4 0 6 3 9 5 5 4 X 52061835 52069183 7349 - MAGED4B-211 REF havana FALSE 1 4 2 4 0 3 2 0 X 52947256 52958492 11237 - FAM156A-215 REF havana FALSE 0 1 1 2 2 5 6 1 X 52947258 52958502 11245 - FAM156A-205 REF havana FALSE 2 0 0 1 0 0 0 0 X 52947260 52958464 11205 - FAM156A-221 REF havana FALSE 1 4 4 2 10 7 6 0 X 52947263 52958388 11126 - FAM156A-201 REF havana FALSE 1 3 1 2 4 3 5 8 X 52947268 52958836 11569 - FAM156A-214 REF havana FALSE 1 0 0 0 1 0 0 1 X 52947270 52958464 11195 - FAM156A-216 REF havana FALSE 0 0 1 0 1 1 0 0 X 52947324 52995465 48142 - FAM156A-211 REF havana FALSE 0 1 0 0 1 0 0 0 X 53199824 53201924 2101 - KDM5C-212 REF havana FALSE 0 0 0 0 0 1 0 0 X 53266350 53281588 15239 - IQSEC2-210 REF ensembl_havana FALSE 0 0 0 0 7 0 1 0 X 53377985 53422654 44670 - SMC1A-201 REF ensembl_havana FALSE 1 3 2 4 3 6 2 1 X 53431265 53434366 3102 - HSD17B10-201 REF ensembl_havana FALSE 70 64 109 65 128 153 81 71 X 53431267 53434370 3104 - HSD17B10-202 REF ensembl_havana FALSE 1 0 0 0 0 0 2 1 X 53431268 53434368 3101 - HSD17B10-203 REF havana FALSE 4 1 4 3 4 7 4 0 X 53543857 53547737 3881 - HUWE1-209 REF havana FALSE 0 1 0 0 0 0 0 1 X 53936684 54044312 107629 - PHF8-202 REF ensembl_havana FALSE 0 0 2 0 1 0 0 1 X 54173839 54183222 9384 - FAM120C-203 REF havana FALSE 1 1 1 2 3 5 2 0 X 54445456 54495163 49708 - FGD1-201 REF ensembl_havana FALSE 0 0 0 0 1 0 0 0 X 55143114 55161171 18058 - FAM104B-202 REF havana FALSE 0 0 1 1 0 0 0 0 X 55145898 55161166 15269 - FAM104B-203 REF ensembl FALSE 5 0 7 3 5 3 4 2 X 55145900 55161133 15234 - FAM104B-205 REF havana FALSE 0 6 4 4 5 8 1 5 X 56975126 56995532 20407 - SPIN3-203 REF havana FALSE 0 1 0 0 0 1 3 1 X 56976382 56995518 19137 - SPIN3-231 REF havana FALSE 0 0 0 0 0 1 0 0 X 56976382 56995528 19147 - SPIN3-232 REF havana FALSE 0 0 1 0 1 0 0 0 X 56976386 56995514 19129 - SPIN3-237 REF havana FALSE 1 0 0 1 1 3 1 1 X 56976386 56995524 19139 - SPIN3-222 REF havana FALSE 0 0 1 1 0 1 0 1 X 56976386 56995539 19154 - SPIN3-230 REF havana FALSE 0 1 0 0 1 1 0 2 X 56976387 56995516 19130 - SPIN3-236 REF havana FALSE 0 1 3 1 3 3 2 2 X 56976388 56995528 19141 - SPIN3-215 REF havana FALSE 0 0 1 2 0 0 1 1 X 56990834 56995518 4685 - SPIN3-201 REF ensembl_havana FALSE 7 3 7 7 3 11 10 11 X 56990835 56995522 4688 - SPIN3-207 REF havana FALSE 6 2 4 3 3 3 4 3 X 56990839 56995516 4678 - SPIN3-218 REF havana FALSE 2 0 0 3 0 1 2 0 X 57119686 57121518 1833 - SPIN2B-203 REF ensembl_havana FALSE 2 2 4 5 3 7 4 3 X 57119688 57121508 1821 - SPIN2B-202;SPIN2B-204 REF ensembl;havana FALSE 10 13 12 7 14 23 23 10 X 57119689 57121504 1816 - SPIN2B-201 REF havana FALSE 6 19 8 6 8 15 8 4 X 63399213 63561054 161842 - LINC01278-203 REF havana FALSE 1 2 7 3 0 2 0 2 X 63426579 63561048 134470 - LINC01278-204 REF havana FALSE 18 22 24 16 16 25 19 20 X 63427759 63561038 133280 - LINC01278-205 REF havana FALSE 13 15 9 13 4 20 11 13 X 63509514 63561060 51547 - LINC01278-201 REF havana FALSE 0 0 0 0 0 1 0 0 X 63634970 63644043 9074 - ARHGEF9-208 REF havana FALSE 0 0 0 1 0 0 0 0 X 63635058 63785188 150131 - ARHGEF9-SL2 NC STEINMETZLAB FALSE 1 0 1 1 0 2 0 0 X 63637652 63755068 117417 - ARHGEF9-213 REF havana FALSE 0 0 1 1 2 0 0 1 X 63637658 63785190 147533 - ARHGEF9-210 REF ensembl_havana FALSE 0 2 0 0 2 2 7 2 X 63637972 63785197 147226 - ARHGEF9-SL1 NC STEINMETZLAB FALSE 7 7 7 10 11 8 6 7 X 63637980 63755072 117093 - ARHGEF9-226 REF havana FALSE 0 1 0 0 0 1 3 0 X 63637981 63755087 117107 - ARHGEF9-201 REF ensembl_havana FALSE 0 2 1 0 0 1 0 1 X 63637989 63754820 116832 - ARHGEF9-218 REF ensembl_havana FALSE 0 0 0 1 1 0 0 0 X 64190216 64205704 15489 - AMER1-201 REF ensembl_havana FALSE 1 1 0 1 1 0 1 0 X 64916478 64976445 59968 - ZC4H2-202 REF ensembl_havana FALSE 20 23 49 26 37 58 23 22 X 64916482 65034733 118252 - ZC4H2-201 REF ensembl_havana FALSE 2 1 6 3 10 6 9 7 X 64916483 64976432 59950 - ZC4H2-204 REF havana FALSE 0 0 0 0 0 1 0 0 X 64916483 65034732 118250 - ZC4H2-207 REF havana FALSE 21 16 28 25 19 44 27 18 X 64920208 64976473 56266 - ZC4H2-206 REF havana FALSE 0 0 0 0 0 0 0 1 X 65512584 65534756 22173 - LAS1L-SL4 MN STEINMETZLAB FALSE 0 0 0 0 1 3 0 0 X 65512584 65534759 22176 - LAS1L-202 REF ensembl_havana FALSE 1 0 0 1 0 2 1 0 X 65512585 65534769 22185 - LAS1L-203 REF ensembl_havana FALSE 3 4 10 9 18 19 6 6 X 65512585 65534772 22188 - LAS1L-SL5 NE STEINMETZLAB FALSE 0 0 1 0 0 2 1 0 X 65520433 65534782 14350 - LAS1L-SL2 ASS STEINMETZLAB FALSE 0 1 1 3 0 1 1 3 X 65520437 65534747 14311 - LAS1L-SL1 NC STEINMETZLAB FALSE 0 3 0 3 1 3 3 0 X 65520580 65534768 14189 - LAS1L-SL3 NE STEINMETZLAB FALSE 1 0 1 0 1 1 1 1 X 66595652 66639052 43401 - EDA2R-202 REF ensembl_havana FALSE 2 1 4 1 4 0 2 0 X 66595653 66639265 43613 - EDA2R-SL1 ASS STEINMETZLAB FALSE 0 0 1 0 0 2 0 0 X 66595697 66639293 43597 - EDA2R-204 REF ensembl FALSE 0 2 2 0 0 1 0 1 X 69160863 69165452 4590 - PJA1-SL1 ASS STEINMETZLAB FALSE 9 13 10 17 11 10 13 10 X 69160863 69165453 4591 - PJA1-201 REF ensembl_havana FALSE 7 5 4 9 7 12 5 5 X 69160863 69165454 4592 - PJA1-202 REF havana FALSE 33 47 52 47 44 57 43 24 X 70286602 70289913 3312 - PDZD11-202 REF havana FALSE 7 15 9 8 18 18 4 10 X 70286602 70289916 3315 - PDZD11-201 REF ensembl_havana FALSE 47 57 76 67 86 94 55 49 X 70427366 70435066 7701 - AL139398.1-201 REF havana FALSE 0 1 0 1 0 2 0 0 X 70925585 70931094 5510 - SLC7A3-202 REF ensembl_havana FALSE 0 1 1 0 0 0 0 0 X 71060958 71068326 7369 - SNX12-202 REF havana FALSE 2 3 2 0 0 0 2 2 X 71249282 71254698 5417 - ZMYM3-SL1 ASS STEINMETZLAB FALSE 0 1 2 0 1 0 1 0 X 71249335 71254126 4792 - ZMYM3-204 REF havana FALSE 0 3 5 4 0 2 2 0 X 71249554 71254569 5016 - ZMYM3-203 REF havana FALSE 0 0 0 0 0 0 1 0 X 71315172 71315991 820 - AL590762.3-201 REF havana FALSE 0 0 0 1 0 0 0 0 X 72127114 72130200 3087 - RTL5-201 REF havana FALSE 3 0 3 1 4 10 9 7 X 72204669 72239012 34344 - ERCC6L-201 REF ensembl_havana FALSE 0 2 4 3 4 5 3 1 X 72272604 72276235 3632 - RPS4X-204 REF havana FALSE 0 1 0 0 1 0 0 0 X 72272609 72277216 4608 - RPS4X-201 REF ensembl_havana FALSE 113 174 341 171 359 455 238 219 X 72329518 72572816 243299 - HDAC8-207 REF ensembl_havana FALSE 9 11 16 12 13 23 8 13 X 72329519 72572813 243295 - HDAC8-SL1 ES STEINMETZLAB FALSE 4 0 3 2 0 3 0 1 X 72329521 72572786 243266 - HDAC8-209 REF ensembl FALSE 0 0 1 1 0 1 0 0 X 72464648 72572850 108203 - HDAC8-210 REF havana FALSE 0 0 0 0 0 1 0 0 X 72473419 72572816 99398 - HDAC8-214 REF ensembl_havana FALSE 0 1 5 5 5 2 2 2 X 72567591 72572814 5224 - HDAC8-202 REF ensembl_havana FALSE 1 0 0 0 2 1 0 0 X 72567602 72572834 5233 - HDAC8-201 REF havana FALSE 1 0 1 1 0 1 1 1 X 72568822 72572816 3995 - HDAC8-215 REF havana FALSE 0 0 0 0 1 0 0 0 X 74245773 74293514 47742 - FTX-204 REF havana FALSE 0 1 0 2 0 0 0 0 X 74274378 74292583 18206 - FTX-208 REF havana FALSE 0 0 1 0 0 0 0 0 X 74278156 74292581 14426 - FTX-203 REF havana FALSE 2 2 3 2 8 1 1 1 X 74278374 74292352 13979 - FTX-201 REF havana FALSE 5 2 0 0 2 0 1 0 X 74591545 74614591 23047 - RLIM-202 REF ensembl_havana FALSE 7 6 3 3 10 11 8 2 X 74591548 74614597 23050 - RLIM-201 REF ensembl_havana FALSE 36 34 65 43 55 88 55 44 X 75053282 75063963 10682 - ABCB7-205 REF havana FALSE 0 1 0 1 1 1 0 1 X 75053282 75156279 102998 - ABCB7-207 REF ensembl_havana FALSE 2 0 0 0 3 0 0 1 X 75053283 75156279 102997 - ABCB7-203 REF havana FALSE 14 14 26 13 38 46 18 17 X 75372161 75523017 150857 - ZDHHC15-201 REF ensembl_havana FALSE 2 2 0 0 2 1 1 2 X 77506921 77522355 15435 - ATRX-218 REF havana FALSE 0 1 1 0 0 2 1 1 X 77619815 77634232 14418 - ATRX-216 REF havana FALSE 0 1 0 0 1 0 0 0 X 77673958 77682220 8263 - ATRX-207 REF havana FALSE 1 2 0 3 1 1 1 0 X 77682618 77786206 103589 - ATRX-211 REF havana FALSE 1 1 4 6 2 2 3 6 X 77682684 77786206 103523 - ATRX-SL1 NC STEINMETZLAB FALSE 3 3 8 7 1 6 2 3 X 77682738 77786205 103468 - ATRX-213 REF havana FALSE 3 1 3 0 2 11 2 1 X 77683529 77786212 102684 - ATRX-SL2 NC STEINMETZLAB FALSE 1 1 2 0 2 3 1 1 X 77826368 77895430 69063 - MAGT1-SL4 ASS STEINMETZLAB FALSE 1 0 0 1 0 1 1 0 X 77826928 77895413 68486 - MAGT1-SL3 ASS STEINMETZLAB FALSE 0 0 0 0 1 1 2 0 X 77827458 77895425 67968 - MAGT1-SL2 ASS STEINMETZLAB FALSE 8 2 8 9 10 5 4 6 X 77827461 77895428 67968 - MAGT1-SL1 ASS STEINMETZLAB FALSE 6 1 12 3 13 8 7 6 X 77827461 77895430 67970 - MAGT1-201;MAGT1-204;MAGT1-205 REF ensembl_havana;ensembl;havana FALSE 7 11 6 13 9 17 8 3 X 77856790 77895432 38643 - MAGT1-203 REF havana FALSE 0 0 0 0 2 0 0 0 X 78129756 78139629 9874 - TAF9B-201 REF ensembl_havana FALSE 52 70 112 83 85 158 99 86 X 78271484 78327661 56178 - CYSLTR1-201 REF ensembl_havana FALSE 5 8 7 5 3 4 1 0 X 78273180 78327824 54645 - CYSLTR1-203 REF ensembl FALSE 1 0 1 0 0 0 0 0 X 79360390 79367331 6942 - ITM2A-202 REF ensembl FALSE 1 1 1 1 2 0 1 3 X 79360411 79367326 6916 - ITM2A-201 REF ensembl_havana FALSE 8 13 8 18 15 12 19 13 X 80732899 80734801 1903 - BRWD3-204 REF havana FALSE 0 0 0 0 0 1 0 0 X 81114876 81121643 6768 - HMGN5-203 REF havana FALSE 0 0 3 0 3 1 1 0 X 81114952 81121632 6681 - HMGN5-202 REF havana FALSE 0 0 1 0 0 0 0 0 X 81116314 81201888 85575 - HMGN5-206 REF havana FALSE 0 0 0 0 0 1 0 0 X 84321214 84502458 181245 - HDX-202 REF havana FALSE 0 0 0 0 0 1 1 0 X 84321223 84502453 181231 - HDX-201 REF ensembl_havana FALSE 3 0 0 1 1 1 3 0 X 84468649 84502452 33804 - HDX-203 REF havana FALSE 0 0 0 1 0 0 0 0 X 85210790 85243770 32981 - NCRNA00068-1 NE STEINMETZLAB FALSE 1 2 2 2 0 2 0 0 X 85861190 86047547 186358 - CHM-201 REF ensembl_havana FALSE 2 0 1 1 5 2 4 2 X 85969930 86047547 77618 - CHM-205 REF ensembl_havana FALSE 1 1 1 3 1 2 1 1 X 85974925 85981820 6896 - CHM-204 REF havana FALSE 0 0 0 0 2 1 0 0 X 86026140 86047552 21413 - CHM-203 REF havana FALSE 1 3 6 1 9 7 2 2 X 100629041 100636724 7684 - TSPAN6-201 REF ensembl_havana FALSE 56 69 122 66 92 174 92 77 X 100632485 100636707 4223 - TSPAN6-203 REF havana FALSE 0 0 0 0 0 1 0 0 X 100674494 100732122 57629 - SYTL4-201 REF havana FALSE 1 0 1 0 1 2 0 0 X 101346169 101348711 2543 - TIMM8A-201 REF ensembl_havana FALSE 19 26 38 20 49 51 19 26 X 101347362 101348702 1341 - TIMM8A-202 REF ensembl_havana FALSE 10 4 2 2 5 8 1 3 X 101397803 101407913 10111 - GLA-207 REF havana FALSE 0 0 0 0 1 0 0 0 X 101397812 101407925 10114 - GLA-201 REF ensembl_havana FALSE 12 13 16 11 17 18 6 5 X 101397812 101407929 10118 - GLA-SL1 IR STEINMETZLAB FALSE 0 0 1 1 0 1 0 1 X 101397816 101398536 721 - GLA-202 REF havana FALSE 0 0 0 0 0 0 1 0 X 101400823 101407944 7122 - GLA-204 REF havana FALSE 1 5 4 0 4 5 3 3 X 101615126 101617985 2860 - ARMCX6-204 REF havana FALSE 0 0 0 0 1 1 1 0 X 101615127 101617954 2828 - ARMCX6-208 REF ensembl FALSE 0 0 1 0 0 0 0 1 X 101615127 101617958 2832 - ARMCX6-206 REF havana FALSE 11 20 35 20 37 31 34 21 X 101615127 101617964 2838 - ARMCX6-201 REF ensembl_havana FALSE 26 24 40 25 32 51 32 24 X 101615128 101617962 2835 - ARMCX6-SL1 ASS STEINMETZLAB FALSE 0 1 6 2 5 1 3 2 X 101615128 101617986 2859 - ARMCX6-202 REF havana FALSE 0 0 1 1 0 1 0 0 X 101655288 101658652 3365 - ARMCX2-202 REF havana FALSE 5 1 4 2 1 7 2 1 X 101655288 101659838 4551 - ARMCX2-SL3 NE STEINMETZLAB FALSE 1 0 0 0 1 4 1 3 X 101655288 101659845 4558 - ARMCX2-201 REF ensembl_havana FALSE 2 1 0 0 3 5 1 1 X 101655288 101659847 4560 - ARMCX2-SL1 NE STEINMETZLAB FALSE 5 5 10 9 8 18 10 8 X 101655288 101659848 4561 - ARMCX2-208 REF havana FALSE 4 3 6 9 7 19 12 13 X 101655289 101659847 4559 - ARMCX2-SL2 ASS STEINMETZLAB FALSE 1 1 2 2 3 3 0 2 X 101655289 101659848 4560 - ARMCX2-205 REF havana FALSE 0 0 0 0 0 0 0 1 X 101655289 101659848 4560 - ARMCX2-203 REF ensembl_havana FALSE 28 14 37 19 45 81 37 39 X 101655289 101659848 4560 - ARMCX2-204 REF havana FALSE 6 11 10 5 12 21 8 11 X 101655289 101659848 4560 - ARMCX2-211 REF havana FALSE 4 2 5 6 11 5 10 9 X 101655290 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STEINMETZLAB FALSE 2 0 1 3 7 5 4 4 X 107713227 107716207 2981 - TSC22D3-208 REF havana FALSE 1 2 0 0 0 1 3 1 X 107713230 107775758 62529 - TSC22D3-203 REF ensembl_havana FALSE 12 9 16 11 7 20 13 9 X 107713230 107775906 62677 - TSC22D3-201 REF havana FALSE 3 2 1 3 1 0 1 1 X 107713230 107775929 62700 - TSC22D3-204 REF havana FALSE 1 3 4 4 2 1 0 0 X 107713231 107716466 3236 - TSC22D3-205 REF ensembl_havana FALSE 8 7 7 8 23 18 9 6 X 107713231 107717058 3828 - TSC22D3-206 REF ensembl_havana FALSE 26 19 26 26 30 41 31 24 X 108084680 108091540 6861 - PSMD10-201 REF ensembl_havana FALSE 179 194 284 257 213 474 178 177 X 108084680 108091541 6862 - PSMD10-204 REF havana FALSE 13 19 27 21 12 42 20 8 X 108084682 108091542 6861 - PSMD10-203 REF havana FALSE 1 1 2 1 4 4 4 0 X 108155611 108164700 9090 - COL4A6-SL1 IR STEINMETZLAB FALSE 0 0 0 0 1 2 0 0 X 108155616 108438440 282825 - COL4A6-208 REF ensembl FALSE 0 0 0 0 1 0 0 0 X 108212242 108439479 227238 - COL4A6-205 REF havana FALSE 2 5 3 0 3 0 4 2 X 108408488 108438387 29900 - COL4A6-SL2 ASS STEINMETZLAB FALSE 0 0 0 0 0 1 2 0 X 109641340 109733231 91892 - ACSL4-202 REF ensembl_havana FALSE 3 5 9 9 4 11 2 5 X 109643037 109733245 90209 - ACSL4-SL1 NE STEINMETZLAB FALSE 0 0 0 0 1 2 0 0 X 109695452 109733211 37760 - ACSL4-207 REF havana FALSE 0 0 1 0 0 0 0 0 X 110196424 110317903 121480 - AMMECR1-203 REF ensembl_havana FALSE 0 0 0 1 2 0 2 0 X 110196424 110318082 121659 - AMMECR1-201 REF ensembl_havana FALSE 9 5 4 6 10 6 7 6 X 111245109 111270552 25444 - CAPN6-201 REF ensembl_havana FALSE 0 0 0 0 1 0 0 0 X 111300630 111412186 111557 - DCX-207 REF havana FALSE 0 0 0 0 0 0 8 2 X 111300633 111412188 111556 - DCX-SL1 ES STEINMETZLAB FALSE 0 0 0 0 0 2 0 3 X 111300633 111412199 111567 - DCX-205 REF havana FALSE 0 0 1 1 4 0 3 3 X 112630900 112679934 49035 - LHFPL1-201 REF ensembl_havana FALSE 0 0 1 0 2 3 2 0 X 112822650 112840836 18187 - AMOT-205 REF havana FALSE 0 0 1 0 0 1 0 0 X 115518189 115562738 44550 - PLS3-AS1-202 REF havana FALSE 0 1 0 0 1 1 2 0 X 117897815 118116792 218978 - KLHL13-207 REF ensembl FALSE 2 1 1 4 5 1 1 0 X 117897816 117985397 87582 - KLHL13-206 REF ensembl_havana FALSE 4 2 3 1 4 12 6 5 X 117897816 118116796 218981 - KLHL13-204;KLHL13-209 REF havana;ensembl FALSE 4 9 13 9 19 19 13 11 X 118855388 118863112 7725 - NCRNA00069-1 NE STEINMETZLAB FALSE 2 0 2 0 0 1 1 2 X 119466039 119469085 3047 - SLC25A5-AS1-204 REF havana FALSE 0 2 0 1 2 2 0 2 X 119466040 119468237 2198 - SLC25A5-AS1-203 REF havana FALSE 5 0 1 4 4 4 6 2 X 119538151 119565386 27236 - CXorf56-SL3 ASS STEINMETZLAB FALSE 2 4 2 1 1 2 0 1 X 119538152 119565372 27221 - CXorf56-SL4 ASS STEINMETZLAB FALSE 0 0 0 2 0 3 1 0 X 119538153 119565392 27240 - CXorf56-SL5 ASS STEINMETZLAB FALSE 0 0 1 0 1 0 0 1 X 119538153 119565399 27247 - CXorf56-SL1 ASS STEINMETZLAB FALSE 1 1 4 2 2 2 1 2 X 119538154 119542579 4426 - CXorf56-202 REF havana FALSE 0 0 0 0 0 1 0 0 X 119538897 119565382 26486 - CXorf56-SL2 NC STEINMETZLAB FALSE 2 2 2 0 2 4 2 0 X 119588346 119605878 17533 - NKRF-201 REF ensembl_havana FALSE 2 0 0 0 0 3 2 0 X 119588399 119593614 5216 - NKRF-202 REF ensembl_havana FALSE 0 0 1 0 0 0 0 0 X 119615729 119693174 77446 - SEPT6-202 REF ensembl_havana FALSE 8 9 14 3 14 16 13 8 X 119618188 119693153 74966 - SEPT6-201 REF ensembl_havana FALSE 0 0 1 0 0 0 0 0 X 119786507 119790001 3495 - RPL39-202 REF havana FALSE 4 5 17 2 20 9 10 10 X 119786508 119791624 5117 - RPL39-201 REF ensembl_havana FALSE 146 184 276 110 532 363 212 222 X 119834033 119852989 18957 - UPF3B-202 REF ensembl_havana FALSE 1 0 1 0 0 2 0 0 X 119925059 119943740 18682 - NKAP-201 REF ensembl_havana FALSE 7 4 5 6 9 6 5 5 X 120258655 120311431 52777 - TMEM255A-203 REF ensembl_havana FALSE 4 7 1 7 0 2 0 0 X 120426176 120469296 43121 - LAMP2-203 REF havana FALSE 5 1 3 7 6 4 2 1 X 120430950 120469293 38344 - LAMP2-201 REF ensembl_havana FALSE 20 9 13 8 7 14 6 9 X 120436503 120469293 32791 - LAMP2-202 REF ensembl_havana FALSE 20 12 14 14 30 28 15 19 X 120524619 120559922 35304 - CUL4B-SL1 NC STEINMETZLAB FALSE 0 2 0 0 0 2 1 0 X 120524624 120560744 36121 - CUL4B-202 REF havana FALSE 2 2 0 1 3 6 2 1 X 120526581 120561394 34814 - CUL4B-201 REF ensembl_havana FALSE 0 1 0 0 1 0 0 0 X 120625934 120630043 4110 - C1GALT1C1-201 REF ensembl_havana FALSE 24 27 38 31 36 44 26 18 X 123600569 123621521 20953 - THOC2-209 REF havana FALSE 0 0 0 0 0 1 0 0 X 123619010 123621738 2729 - THOC2-213 REF havana FALSE 0 0 0 1 0 0 0 0 X 123621554 123623638 2085 - THOC2-211 REF havana FALSE 0 0 1 0 2 0 0 0 X 123621554 123733032 111479 - THOC2-SL1 IR STEINMETZLAB FALSE 1 0 0 0 3 0 0 1 X 123668199 123733033 64835 - THOC2-206 REF havana FALSE 4 8 30 8 14 26 5 7 X 123959238 123961540 2303 - AL121601.1-201 REF havana FALSE 4 0 2 1 4 4 1 0 X 126270375 126460353 189979 - NCRNA00070-1 NE STEINMETZLAB FALSE 0 0 0 0 1 0 0 2 X 129446519 129523457 76939 - SMARCA1-SL1 NC STEINMETZLAB FALSE 1 2 3 5 7 11 4 6 X 129446580 129523481 76902 - SMARCA1-SL3 NC STEINMETZLAB FALSE 0 0 0 1 2 1 0 0 X 129446758 129523489 76732 - SMARCA1-201 REF ensembl_havana FALSE 22 6 6 10 18 10 8 0 X 129446759 129523481 76723 - SMARCA1-203 REF ensembl_havana FALSE 8 3 11 9 18 19 10 16 X 129446761 129523479 76719 - SMARCA1-SL2 NC STEINMETZLAB FALSE 4 0 1 2 2 9 1 2 X 129805337 129843554 38218 - ZDHHC9-202 REF ensembl_havana FALSE 0 1 0 0 1 0 0 0 X 129805342 129843875 38534 - ZDHHC9-201 REF ensembl_havana FALSE 5 4 10 9 6 7 5 4 X 130129363 130165722 36360 - AIFM1-202 REF ensembl_havana FALSE 0 0 1 0 1 0 0 0 X 130129368 130137176 7809 - AIFM1-205 REF havana FALSE 0 1 0 2 0 1 1 0 X 130129370 130165730 36361 - AIFM1-201 REF ensembl_havana FALSE 48 43 69 44 106 110 55 72 X 130202754 130268892 66139 - ZNF280C-201 REF ensembl_havana FALSE 1 0 1 0 0 1 1 0 X 130623902 130903209 279308 - ENOX2-201 REF ensembl FALSE 2 0 1 0 0 2 1 0 X 130623903 130886151 262249 - ENOX2-SL1 ASS STEINMETZLAB FALSE 2 0 2 1 1 3 1 1 X 130623903 130903223 279321 - ENOX2-204 REF ensembl FALSE 4 4 1 6 3 11 1 3 X 130623911 130903203 279293 - ENOX2-203 REF ensembl_havana FALSE 1 0 1 1 1 2 2 0 X 130656611 130903202 246592 - ENOX2-205 REF havana FALSE 0 1 0 0 0 3 1 1 X 132204642 132219456 14815 - RAP2C-205 REF ensembl FALSE 0 0 1 2 0 5 2 1 X 133302402 133415484 113083 - GPC4-201 REF ensembl_havana FALSE 8 8 9 10 6 10 6 8 X 133535755 133985581 449827 - GPC3-201 REF ensembl_havana FALSE 1 5 3 4 0 2 1 1 X 134565847 134733651 167805 - PLAC1-SL1 ASS STEINMETZLAB FALSE 2 0 2 1 2 2 0 2 X 134565847 134733686 167840 - PLAC1-204 REF havana FALSE 5 0 5 3 6 5 5 3 X 134769576 134796277 26702 - FAM122B-203 REF ensembl_havana FALSE 0 0 1 6 0 0 0 1 X 134769577 134796276 26700 - FAM122B-202 REF ensembl FALSE 1 0 0 1 0 0 0 0 X 134887634 134915218 27585 - MOSPD1-207 REF havana FALSE 0 0 1 1 0 0 1 0 X 134887634 134915239 27606 - MOSPD1-202 REF ensembl_havana FALSE 2 2 5 7 3 5 2 5 X 134887635 134915240 27606 - MOSPD1-203 REF ensembl_havana FALSE 11 6 4 7 13 17 9 4 X 134887636 134899536 11901 - MOSPD1-201 REF havana FALSE 1 1 2 1 2 2 0 2 X 134887637 134915224 27588 - MOSPD1-SL1 NE STEINMETZLAB FALSE 0 0 0 2 1 2 0 0 X 134899284 134915214 15931 - MOSPD1-204 REF havana FALSE 0 0 1 0 0 0 0 0 X 135050943 135052129 1187 - RTL8A-204 REF ensembl_havana FALSE 20 33 42 28 54 50 28 25 X 135094994 135098709 3716 - SMIM10L2B-201 REF havana FALSE 1 0 0 1 2 1 0 0 X 135285790 135291142 5353 - ZNF75D-203 REF havana FALSE 0 0 0 0 0 0 1 0 X 135285794 135344030 58237 - ZNF75D-202 REF ensembl_havana FALSE 0 0 0 1 2 0 2 2 X 135285797 135344016 58220 - ZNF75D-SL1 ASS STEINMETZLAB FALSE 1 0 0 0 2 1 0 2 X 135963141 135973758 10618 - MMGT1-201 REF ensembl_havana FALSE 14 9 15 10 26 29 16 15 X 136218245 136251372 33128 - MAP7D3-201 REF ensembl_havana FALSE 3 2 1 3 2 5 1 2 X 136665562 136767340 101779 - ARHGEF6-202 REF havana FALSE 2 0 1 2 2 4 2 3 X 136869193 136880723 11531 - RBMX-212 REF havana FALSE 0 0 0 0 0 1 0 0 X 136869194 136874246 5053 - RBMX-205 REF havana FALSE 3 1 6 5 1 3 1 1 X 136869194 136880717 11524 - RBMX-SL2 NE STEINMETZLAB FALSE 2 3 6 6 4 18 10 15 X 136869195 136880721 11527 - RBMX-SL1 NC STEINMETZLAB FALSE 8 7 16 16 21 28 16 15 X 136873136 136880718 7583 - RBMX-207 REF havana FALSE 7 11 11 4 10 6 9 4 X 136873466 136880720 7255 - RBMX-201 REF ensembl_havana FALSE 78 154 233 134 251 400 227 182 X 136879376 136880722 1347 - RBMX-210 REF havana FALSE 0 0 2 0 0 2 0 0 X 138631579 138711345 79767 - FGF13-202 REF ensembl_havana FALSE 33 33 46 41 41 74 33 37 X 141175758 141177089 1332 - LDOC1-202 REF havana FALSE 5 5 2 1 8 5 4 1 X 143628130 143635044 6915 - SLITRK4-201 REF ensembl_havana FALSE 28 10 6 8 2 11 1 3 X 143628134 143634505 6372 - SLITRK4-203 REF ensembl FALSE 2 1 1 2 0 1 0 0 X 143628134 143635986 7853 - SLITRK4-202 REF ensembl_havana FALSE 9 3 3 5 1 2 1 0 X 149482538 149505306 22769 - IDS-201 REF ensembl_havana FALSE 8 9 14 10 12 18 5 10 X 149482541 149505301 22761 - IDS-SL2 IR STEINMETZLAB FALSE 4 0 1 1 2 3 2 1 X 149482544 149505303 22760 - IDS-SL1 NC STEINMETZLAB FALSE 3 1 3 1 2 3 2 3 X 149487138 149505289 18152 - IDS-202 REF ensembl_havana FALSE 3 1 1 4 1 0 1 1 X 149487139 149505275 18137 - IDS-206 REF ensembl_havana FALSE 0 0 0 0 0 0 0 1 X 149487142 149505338 18197 - IDS-SL3 NC STEINMETZLAB FALSE 0 0 0 1 2 0 1 0 X 149503370 149505291 1922 - IDS-203 REF havana FALSE 8 9 4 1 1 6 2 5 X 149596557 149631715 35159 - TMEM185A-208 REF ensembl FALSE 1 0 4 1 0 0 0 0 X 149596559 149600473 3915 - TMEM185A-211 REF havana FALSE 0 0 1 2 1 1 0 1 X 149596559 149631702 35144 - TMEM185A-SL1 NC STEINMETZLAB FALSE 0 1 2 0 2 0 0 1 X 149596559 149631727 35169 - TMEM185A-207 REF ensembl_havana FALSE 20 33 33 27 34 38 29 17 X 149597332 149631732 34401 - TMEM185A-209 REF havana FALSE 0 0 4 1 3 0 0 0 X 149603709 149631730 28022 - TMEM185A-204 REF havana FALSE 6 7 11 4 14 11 6 4 X 149608342 149613980 5639 - TMEM185A-206 REF havana FALSE 0 0 0 0 0 1 0 0 X 149608350 149631732 23383 - TMEM185A-205 REF havana FALSE 0 0 0 0 0 0 1 0 X 149929532 149938453 8922 - CXorf40B-SL4 NC STEINMETZLAB FALSE 1 1 0 0 0 1 2 0 X 149929534 149938464 8931 - CXorf40B-205 REF havana FALSE 3 1 4 0 3 6 0 3 X 149932198 149938471 6274 - CXorf40B-201 REF havana FALSE 0 0 1 0 0 1 0 1 X 149932200 149938468 6269 - CXorf40B-SL2 ASS STEINMETZLAB FALSE 1 1 2 0 1 6 0 3 X 149932200 149938468 6269 - CXorf40B-SL1 NC STEINMETZLAB FALSE 4 2 3 3 2 2 3 1 X 149932200 149938468 6269 - CXorf40B-203 REF ensembl_havana FALSE 8 7 15 4 13 16 3 8 X 149932202 149938466 6265 - CXorf40B-204 REF havana FALSE 0 1 0 0 1 0 0 3 X 149932202 149938474 6273 - CXorf40B-SL3 ASS STEINMETZLAB FALSE 1 0 1 1 1 2 2 3 X 149932210 149938448 6239 - CXorf40B-202 REF havana FALSE 1 0 0 0 1 0 1 0 X 150766341 150898660 132320 - CD99L2-203 REF ensembl_havana FALSE 5 5 8 5 10 12 9 11 X 150766342 150898646 132305 - CD99L2-206 REF ensembl_havana FALSE 0 2 0 2 2 8 1 2 X 150766349 150898658 132310 - CD99L2-205 REF ensembl FALSE 0 0 1 0 0 0 0 0 X 151953128 151974675 21548 - GABRE-SL2 NC STEINMETZLAB FALSE 0 0 1 0 0 0 1 1 X 151953130 151955879 2750 - GABRE-210 REF havana FALSE 0 0 1 1 0 0 0 0 X 151953410 151957086 3677 - GABRE-209 REF havana FALSE 4 0 0 3 2 0 2 0 X 151953645 151974674 21030 - GABRE-SL1 NC STEINMETZLAB FALSE 0 0 2 3 0 1 1 0 X 151954142 151974680 20539 - GABRE-201 REF ensembl_havana FALSE 0 0 0 0 1 2 0 0 X 152827328 152830206 2879 - CETN2-202 REF havana FALSE 0 0 0 1 0 0 0 1 X 152827330 152830746 3417 - CETN2-201 REF ensembl_havana FALSE 18 19 25 38 28 39 17 22 X 153447670 153470564 22895 - HAUS7-202 REF ensembl_havana FALSE 4 4 7 5 6 13 9 10 X 153587928 153599130 11203 - CCNQ-202 REF havana FALSE 0 1 1 2 1 2 0 2 X 153587929 153599130 11202 - CCNQ-204 REF ensembl_havana FALSE 0 4 0 1 1 0 0 0 X 153700500 153724066 23567 - BCAP31-207 REF ensembl_havana FALSE 6 5 5 4 6 11 8 5 X 153700500 153724387 23888 - BCAP31-201 REF ensembl_havana FALSE 49 39 75 48 77 73 46 36 X 153785770 153794367 8598 - IDH3G-SL1 ASS STEINMETZLAB FALSE 0 0 1 0 0 3 1 0 X 153785770 153794371 8602 - IDH3G-201 REF ensembl_havana FALSE 6 7 4 1 12 13 7 2 X 153786356 153794344 7989 - IDH3G-203 REF havana FALSE 0 0 1 1 0 0 0 0 X 153790202 153794358 4157 - IDH3G-209 REF havana FALSE 0 0 1 0 0 0 0 0 X 153929924 153932578 2655 - NAA10-215 REF havana FALSE 0 0 0 0 0 1 0 0 X 153929929 153931098 1170 - NAA10-214 REF havana FALSE 0 0 0 0 1 0 1 0 X 153929930 153935004 5075 - NAA10-201 REF ensembl_havana FALSE 2 0 2 1 0 2 2 0 X 153929930 153935016 5087 - NAA10-208 REF ensembl_havana FALSE 28 36 45 23 60 55 39 27 X 153929941 153934782 4842 - NAA10-207 REF havana FALSE 1 0 1 0 3 0 0 2 X 153930028 153935019 4992 - NAA10-209 REF havana FALSE 0 1 0 1 0 0 0 1 X 153932371 153934999 2629 - NAA10-211 REF havana FALSE 0 0 1 0 0 0 0 0 X 153933374 153935028 1655 - NAA10-216 REF havana FALSE 0 0 1 0 0 0 1 0 X 153933666 153935019 1354 - NAA10-213 REF havana FALSE 0 0 0 0 1 0 0 0 X 153947564 153955454 7891 - HCFC1-203 REF havana FALSE 1 2 0 0 0 1 1 0 X 154030141 154097698 67558 - MECP2-201 REF ensembl_havana FALSE 0 0 0 0 1 1 0 0 X 154030750 154097696 66947 - MECP2-205 REF ensembl_havana FALSE 1 0 1 0 1 0 1 0 X 154348533 154349870 1338 - FLNA-210 REF havana FALSE 1 6 1 1 3 1 0 0 X 154352632 154353723 1092 - FLNA-205 REF havana FALSE 0 0 0 1 0 0 0 0 X 154401758 154412101 10344 - DNASE1L1-206 REF ensembl FALSE 1 1 1 0 0 0 0 0 X 154401764 154412095 10332 - DNASE1L1-205 REF ensembl FALSE 0 0 0 4 2 2 1 3 X 154401768 154409254 7487 - DNASE1L1-203 REF havana FALSE 1 1 2 0 0 0 0 0 X 154401768 154412101 10334 - DNASE1L1-202 REF ensembl_havana FALSE 2 2 3 1 1 2 1 3 X 154424389 154428463 4075 - CH17-340M24.3-201 REF havana FALSE 17 11 14 16 23 19 8 11 X 154477778 154478882 1105 - LAGE3-201 REF ensembl_havana FALSE 24 30 45 35 74 69 29 27 X 154483723 154485924 2202 - UBL4A-205 REF havana FALSE 3 1 3 0 3 3 1 0 X 154483729 154486609 2881 - UBL4A-202 REF ensembl_havana FALSE 27 27 39 24 44 61 31 47 X 154487323 154490649 3327 - SLC10A3-201;SLC10A3-205 REF ensembl;havana FALSE 1 3 5 3 4 5 4 3 X 154487326 154490627 3302 - SLC10A3-204 REF ensembl_havana FALSE 0 2 1 2 0 0 2 0 X 154506173 154516231 10059 - FAM3A-205 REF ensembl_havana FALSE 0 0 0 0 0 0 1 0 X 154506174 154516168 9995 - FAM3A-222 REF havana FALSE 0 1 1 0 0 0 1 0 X 154506175 154516190 10016 - FAM3A-208 REF ensembl FALSE 0 0 0 2 0 1 0 0 X 154506175 154516193 10019 - FAM3A-215 REF ensembl_havana FALSE 1 0 3 3 3 3 3 1 X 154506175 154516194 10020 - FAM3A-202 REF havana FALSE 4 2 2 3 4 6 1 2 X 154506175 154516208 10034 - FAM3A-203 REF havana FALSE 0 1 2 0 1 4 0 0 X 154506176 154508109 1934 - FAM3A-218 REF havana FALSE 0 0 0 0 0 1 1 0 X 154506176 154516190 10015 - FAM3A-204 REF havana FALSE 0 0 1 0 1 0 0 0 X 154506177 154508519 2343 - FAM3A-221 REF havana FALSE 0 0 0 1 0 0 0 0 X 154506177 154516212 10036 - FAM3A-SL1 NC STEINMETZLAB FALSE 0 0 0 3 3 0 2 0 X 154506182 154516161 9980 - FAM3A-212 REF havana FALSE 0 0 0 0 0 0 0 1 X 154676169 154751073 74905 - GAB3-203 REF ensembl_havana FALSE 0 2 2 2 1 2 0 2 X 154778687 154805425 26739 - MPP1-202 REF ensembl_havana FALSE 4 15 25 18 17 29 11 20 X 154778688 154781676 2989 - MPP1-216 REF havana FALSE 0 0 0 0 1 1 0 0 X 154835796 154886248 50453 - F8-201 REF ensembl_havana FALSE 0 1 2 0 0 3 0 1 X 154984493 155026940 42448 - F8-203 REF havana FALSE 0 0 2 5 0 0 3 1 X 155061629 155071115 9487 - CMC4-202 REF ensembl_havana FALSE 11 14 18 8 47 45 29 18 X 155061629 155147773 86145 - MTCP1-SL1 ES STEINMETZLAB FALSE 0 1 0 4 0 2 2 2 X 155061630 155071112 9483 - CMC4-SL1 ASS STEINMETZLAB FALSE 2 6 8 8 11 17 7 8 X 155064362 155071168 6807 - MTCP1-204 REF havana FALSE 0 0 0 1 0 0 0 0 X 155064535 155071175 6641 - MTCP1-202 REF ensembl_havana FALSE 0 0 0 1 0 0 0 0 X 155258338 155264498 6161 - RAB39B-201 REF ensembl_havana FALSE 7 8 4 6 7 23 8 5 X 155491246 155612901 121656 - TMLHE-201 REF ensembl_havana FALSE 8 5 6 7 20 22 6 12 X 155491450 155612914 121465 - TMLHE-SL2 ES STEINMETZLAB FALSE 0 0 0 0 0 1 2 0 X 155491451 155719096 227646 - TMLHE-SL1 ASS STEINMETZLAB FALSE 0 0 0 0 0 2 0 3 X 155491457 155719057 227601 - TMLHE-SL3 NE STEINMETZLAB FALSE 2 0 1 2 0 0 0 0 X 155492538 155612900 120363 - TMLHE-202 REF ensembl_havana FALSE 1 0 0 0 2 1 0 0 Y 2841604 2866947 25344 + RPS4Y1-201 REF ensembl_havana FALSE 31 56 71 37 82 97 37 36 Y 2841629 2866947 25319 + RPS4Y1-202 REF havana FALSE 5 5 3 2 2 2 0 0 Y 2853693 2866946 13254 + RPS4Y1-203 REF havana FALSE 5 1 1 2 3 10 4 3 Y 2935238 2982492 47255 + ZFY-202 REF havana FALSE 0 0 0 0 2 0 0 0 Y 2935386 2982504 47119 + ZFY-201 REF ensembl FALSE 0 1 1 1 1 1 0 0 Y 2935389 2979330 43942 + ZFY-204 REF ensembl_havana FALSE 0 0 0 0 0 0 1 0 Y 2935393 2962908 27516 + ZFY-203 REF havana FALSE 0 0 1 0 0 0 0 0 Y 6910704 6916416 5713 + TBL1Y-SL1 NE STEINMETZLAB FALSE 0 1 0 0 0 3 0 2 Y 12662353 12689396 27044 + TTTY15-202 REF havana FALSE 4 6 12 4 11 9 3 3 Y 12662354 12689399 27046 + TTTY15-201 REF havana FALSE 0 1 1 1 2 2 2 0 Y 12662355 12702056 39702 + TTTY15-SL1 ASS STEINMETZLAB TRUE 0 1 1 4 0 2 1 1 Y 12662406 12690442 28037 + TTTY15-203 REF havana FALSE 0 0 0 0 1 0 0 0 Y 12857377 12860821 3445 + USP9Y-204 REF havana FALSE 0 0 0 1 2 0 1 1 Y 12904828 12920472 15645 + DDX3Y-SL3 IR STEINMETZLAB FALSE 0 0 0 0 1 1 2 0 Y 12904839 12920474 15636 + DDX3Y-201 REF havana FALSE 15 7 12 18 12 19 5 12 Y 12904845 12920471 15627 + DDX3Y-SL4 ASS STEINMETZLAB FALSE 3 1 0 1 0 1 0 1 Y 12904845 12920474 15630 + DDX3Y-SL5 IR STEINMETZLAB FALSE 0 0 0 0 1 2 0 0 Y 12904861 12920478 15618 + DDX3Y-SL1 IR STEINMETZLAB FALSE 0 0 2 1 1 2 0 1 Y 12904868 12920477 15610 + DDX3Y-SL2 ES STEINMETZLAB FALSE 0 0 0 1 3 1 0 0 Y 13703902 13706013 2112 + TMSB4Y-201 REF ensembl_havana FALSE 4 5 7 3 7 8 7 3 Y 14524530 14623586 99057 + NLGN4Y-208 REF havana FALSE 3 0 0 2 2 1 1 0 Y 14524708 14841309 316602 + NLGN4Y-201 REF havana FALSE 1 0 3 0 0 2 0 1 Y 19567358 19590412 23055 + TXLNGY-SL2 NC STEINMETZLAB FALSE 0 0 0 1 1 3 0 0 Y 19567376 19590415 23040 + TXLNGY-206 REF havana FALSE 0 0 0 1 0 3 0 1 Y 19567845 19589846 22002 + TXLNGY-SL1 NC STEINMETZLAB FALSE 0 0 0 5 1 3 0 1 Y 20575776 20592627 16852 + EIF1AY-201 REF ensembl_havana FALSE 88 104 167 117 210 186 107 100 Y 20575782 20592629 16848 + EIF1AY-202 REF havana FALSE 2 4 4 3 3 4 0 0 Y 20575783 20588109 12327 + EIF1AY-204 REF havana FALSE 0 1 0 1 0 0 0 0 Y 20588026 20593153 5128 + EIF1AY-205 REF havana FALSE 0 0 2 1 3 0 0 0 Y 20589510 20592627 3118 + EIF1AY-203 REF havana FALSE 0 1 1 0 0 1 3 0 Y 13248441 13479976 231536 - UTY-205 REF ensembl FALSE 0 0 1 0 0 0 0 0 Y 13248443 13479890 231448 - UTY-202 REF havana FALSE 0 0 0 0 0 1 1 0 Y 13395929 13479973 84045 - UTY-204 REF havana FALSE 4 7 2 1 3 8 3 2 Y 13479058 13479986 929 - UTY-208 REF havana FALSE 0 0 2 0 2 0 1 2 Y 17575194 17579794 4601 - FAM224B-SL1 ASS STEINMETZLAB FALSE 1 1 1 3 0 0 0 0 Y 18872505 19076002 203498 - TTTY14-SL2 NE STEINMETZLAB FALSE 0 1 0 1 1 3 2 1 Y 18872505 19076008 203504 - TTTY14-SL1 ES STEINMETZLAB FALSE 2 0 3 1 3 2 4 2 Y 18872505 19077345 204841 - TTTY14-205 REF havana FALSE 1 0 0 0 1 1 0 1 Y 18872507 19076018 203512 - TTTY14-SL6 MN STEINMETZLAB FALSE 0 0 1 0 0 0 0 2 Y 18872597 18877205 4609 - TTTY14-201 REF ensembl_havana FALSE 0 0 0 0 1 0 0 0 Y 18932438 19075998 143561 - TTTY14-SL3 NE STEINMETZLAB FALSE 1 1 0 0 3 1 1 0 Y 18932446 19075994 143549 - TTTY14-SL4 ES STEINMETZLAB FALSE 0 0 0 0 2 2 1 0 Y 18932446 19076005 143560 - TTTY14-SL5 NE STEINMETZLAB FALSE 1 0 1 0 2 0 0 1 Y 18932710 19077347 144638 - TTTY14-202 REF havana FALSE 0 0 0 0 2 1 0 0 Y 19705424 19744722 39299 - KDM5D-201 REF ensembl_havana FALSE 1 3 2 3 2 5 0 2 Y 20523205 20575496 52292 - KDM5DP1-SL1 NE STEINMETZLAB FALSE 0 0 1 2 0 0 0 0