id source province_of_diagnostics country_code country intregion subregion region sample_date diagnostics_date gender risk_group treated subtype_annotated subtype_jpHMM subtype_consensus subtype_tree subtype_CRF_19_D subtype_CRF_19_G subtype_CRF_19_A1 CRF_19_compatible POL Accession Number ENV Accession Number AB098331 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa A1 A1 A1 AB098331 AB098331 AB098333 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1992 A1 A1 A1 AB098333 AB098333 AB253421 LA abroad RW Rwanda Eastern Africa Sub-Saharan Africa Africa 1992 A1 A1 A1 AB253421 AB253421 AB253429 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1992 A1 A1 A1 AB253429 AB253429 AB287004 LA abroad GH Ghana Western Africa Sub-Saharan Africa Africa 2003 G G G AB287004 AB287004 AB287376 LA abroad RW Rwanda Eastern Africa Sub-Saharan Africa Africa 1992 A1 A1 A1 AB287376 AB287376 AB287379 LA abroad RW Rwanda Eastern Africa Sub-Saharan Africa Africa 1993 A1 A1 A1 AB287379 AB287379 AB485632 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa A1 A1 A1 AB485632 AB485632 AB485648 LA abroad SN Senegal Western Africa Sub-Saharan Africa Africa 1990 D D D AB485648 AB485648 AB485650 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1991 D D D AB485650 AB485650 AF004885 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 1994 A1 A1 A1 AF004885 AF004885 AF061641 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 1993 G G G AF061641 AF061641 AF061642 LA abroad SE Sweden Northern Europe Europe Europe 1993 G G G AF061642 AF061642 AF069669 LA abroad SE Sweden Northern Europe Europe Europe 1995 A1 A1 A1 AF069669 AF069669 AF069670 LA abroad SE Sweden Northern Europe Europe Europe 1994 A1 A1 A1 AF069670 AF069670 AF069671 LA abroad SE Sweden Northern Europe Europe Europe 1994 A1 A1 A1 AF069671 AF069671 AF069673 LA abroad SE Sweden Northern Europe Europe Europe 1995 A1 A1 A1 AF069673 AF069673 AF084936 LA abroad BE Belgium Western Europe Europe Europe 1996 G G G AF084936 AF084936 AF107771 LA abroad SE Sweden Northern Europe Europe Europe 1995 A1 A1 A1 AF107771 AF107771 AF361872 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 1997 A1 A1 A1 AF361872 AF361872 AF361873 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 1997 A1 A1 A1 AF361873 AF361873 AF450098 LA abroad ES Spain Southern Europe Europe Europe 1999 G G G AF450098 AF450098 AF457052 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457052 AF457052 AF457053 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457053 AF457053 AF457055 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457055 AF457055 AF457063 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 1999 A1 A1 A1 AF457063 AF457063 AF457065 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 1999 A1 A1 A1 AF457065 AF457065 AF457066 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457066 AF457066 AF457067 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457067 AF457067 AF457068 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457068 AF457068 AF457069 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457069 AF457069 AF457070 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457070 AF457070 AF457075 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 1999 A1 A1 A1 AF457075 AF457075 AF457077 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457077 AF457077 AF457079 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457079 AF457079 AF457080 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457080 AF457080 AF457081 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457081 AF457081 AF457083 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457083 AF457083 AF457084 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457084 AF457084 AF457086 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457086 AF457086 AF457089 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 AF457089 AF457089 AF457090 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2001 D D D AF457090 AF457090 AF484477 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484477 AF484477 AF484478 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 A1 A1 A1 AF484478 AF484478 AF484480 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484480 AF484480 AF484481 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484481 AF484481 AF484483 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484483 AF484483 AF484485 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484485 AF484485 AF484486 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484486 AF484486 AF484489 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484489 AF484489 AF484490 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484490 AF484490 AF484493 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 A1 A1 A1 AF484493 AF484493 AF484494 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484494 AF484494 AF484495 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484495 AF484495 AF484497 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484497 AF484497 AF484498 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484498 AF484498 AF484499 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484499 AF484499 AF484502 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1998 D D D AF484502 AF484502 AF484505 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1998 D D D AF484505 AF484505 AF484506 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1998 D D D AF484506 AF484506 AF484507 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1998 A1 A1 A1 AF484507 AF484507 AF484508 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1998 A1 A1 A1 AF484508 AF484508 AF484509 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1998 A1 A1 A1 AF484509 AF484509 AF484511 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1998 D D D AF484511 AF484511 AF484512 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1998 A1 A1 A1 AF484512 AF484512 AF484513 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1998 D D D AF484513 AF484513 AF484514 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1998 D D D AF484514 AF484514 AF484515 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484515 AF484515 AF484516 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1998 D D D AF484516 AF484516 AF484518 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484518 AF484518 AF484519 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AF484519 AF484519 AF539405 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 1986 A1 A1 A1 AF539405 AF539405 AIDS-RP1 CU Camaguey CU Cuba Cuba Cuba Cuba 01-Nov-2007 07-Nov-2006 F HT naive CRF_19 D CRF_19 CRF_19 D True KP688083 KP688175 AIDS-RP11 CU La Habana CU Cuba Cuba Cuba Cuba 08-Apr-2008 11-Jul-2006 M MSM naive CRF_19 D CRF_19 CRF_19 D True KP688085 KP688177 AIDS-RP14 CU Cienfuegos CU Cuba Cuba Cuba Cuba 30-Apr-2008 02-Aug-2005 M MSM naive CRF_19 D CRF_19 CRF_19 D True KP688088 KP688180 AIDS-RP2 CU La Habana CU Cuba Cuba Cuba Cuba 07-Nov-2007 19-Jun-2007 M MSM naive CRF_19 D CRF_19 CRF_19 D True KP688094 KP688186 AIDS-RP28 CU La Habana CU Cuba Cuba Cuba Cuba 12-Feb-2009 05-May-2007 M HT naive CRF_19 D CRF_19 CRF_19 D True KP688103 KP688195 AIDS-RP29 CU La Habana CU Cuba Cuba Cuba Cuba 12-Feb-2009 06-Oct-2009 M MSM naive CRF_19 D CRF_19 CRF_19 D True KP688104 AIDS-RP46 CU Matanzas CU Cuba Cuba Cuba Cuba 02-Feb-2011 02-Nov-2010 M MSM naive CRF_19 D CRF_19 CRF_19 D True KP688123 AIDS-RP7 CU Villa Clara CU Cuba Cuba Cuba Cuba 15-Jan-2008 13-Dec-2005 M MSM naive CRF_19 D CRF_19 CRF_19 D True KP688132 KP688208 AJ320484 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1992 D D D AJ320484 AJ320484 AJ488926 LA abroad TD Chad Middle Africa Sub-Saharan Africa Africa 1999 D D D AJ488926 AJ488926 AJ488927 LA abroad TD Chad Middle Africa Sub-Saharan Africa Africa 1999 D D D AJ488927 AJ488927 AR6 CU Artemisa CU Cuba Cuba Cuba Cuba 30-Jul-2013 23-Apr-2013 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004153 AR7 CU Artemisa CU Cuba Cuba Cuba Cuba 20-Jun-2013 23-Apr-2013 M HT naive CRF_19 D CRF_19 CRF_19 D True MZ004154 AY253305 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2001 A1 A1 A1 AY253305 AY253305 AY253311 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2001 D D D AY253311 AY253311 AY253314 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2001 A1 A1 A1 AY253314 AY253314 AY304496 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1999 D D D AY304496 AY304496 AY322185 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 1997 A1 A1 A1 AY322185 AY322185 AY322189 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 1997 D D D AY322189 AY322189 AY322190 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 1997 A1 A1 A1 AY322190 AY322190 AY322193 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 1997 A1 A1 A1 AY322193 AY322193 AY371121 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2001 G G G AY371121 AY371121 AY371155 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2001 D D D AY371155 AY371155 AY371156 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2001 D D D AY371156 AY371156 AY371157 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2001 D D D AY371157 AY371157 AY586547 LA CU Cuba Cuba Cuba Cuba 1999 G G G AY586547 AY586547 AY586548 LA CU Cuba Cuba Cuba Cuba 1999 G G G AY586548 AY586548 AY586549 LA CU Cuba Cuba Cuba Cuba 1999 G G G AY586549 AY586549 AY588970 LA CU Cuba Cuba Cuba Cuba 1999 CRF_19 CRF_19 CRF_19 AY588970 AY588970 AY588971 LA CU Cuba Cuba Cuba Cuba 1999 CRF_19 CRF_19 CRF_19 AY588971 AY588971 AY612637 LA abroad PT Portugal Southern Europe Europe Europe G G G AY612637 AY612637 AY713406 LA abroad RW Rwanda Eastern Africa Sub-Saharan Africa Africa 1993 A1 A1 A1 AY713406 AY713406 AY713418 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1993 D D D AY713418 AY713418 AY772535 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 1996 G G G AY772535 AY772535 AY773338 LA abroad ZA South Africa Southern Africa Sub-Saharan Africa Africa 1984 D D D AY773338 AY773338 AY773340 LA abroad ZA South Africa Southern Africa Sub-Saharan Africa Africa 1985 D D D AY773340 AY773340 AY773341 LA abroad ZA South Africa Southern Africa Sub-Saharan Africa Africa 1986 D D D AY773341 AY773341 AY795903 LA abroad YE Yemen Western Asia Asia Asia 2001 D D D AY795903 AY795903 AY795907 LA abroad YE Yemen Western Asia Asia Asia 2002 D D D AY795907 AY795907 AY894994 LA CU Cuba Cuba Cuba Cuba 1999 CRF_19 CRF_19 CRF_19 AY894994 AY894994 CA1 CU Ciego de Avila CU Cuba Cuba Cuba Cuba 10-Apr-2013 15-Jul-2013 M HT naive CRF_19 D CRF_19 CRF_19 D True MZ004155 CA26 CU Ciego de Avila CU Cuba Cuba Cuba Cuba 18-Oct-2013 27-Sep-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004156 CB_006 CU La Habana CU Cuba Cuba Cuba Cuba 04-May-2003 03-Feb-1998 M MSM naive CRF_19 D CRF_19 CRF_19 D True DQ112966 CB_025 CU Sancti Spiritus CU Cuba Cuba Cuba Cuba 04-Jun-2003 27-Nov-2001 M MSM naive CRF_19 D CRF_19 CRF_19 D True DQ112975 CB_029 CU Villa Clara CU Cuba Cuba Cuba Cuba 04-May-2003 02-Sep-1997 M MSM treated CRF_19 D CRF_19 CRF_19 D True DQ112977 CB_095 CU Artemisa CU Cuba Cuba Cuba Cuba 04-May-2003 18-Nov-1997 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004315 CB_137 CU La Habana CU Cuba Cuba Cuba Cuba 25-May-2003 16-Oct-2001 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004321 CB_168 CU Cienfuegos CU Cuba Cuba Cuba Cuba 04-May-2003 26-Nov-1996 M MSM treated CRF_19 D CRF_19 CRF_19 D True DQ113049 CB_242 CU Ciego de Avila CU Cuba Cuba Cuba Cuba 04-Aug-2003 18-Mar-2003 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004323 CB_260 CU La Habana CU Cuba Cuba Cuba Cuba 12-May-2003 01-Aug-2000 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004318 CB_293 CU La Habana CU Cuba Cuba Cuba Cuba 04-Jun-2003 05-Mar-2002 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004322 CB_300 CU Sancti Spiritus CU Cuba Cuba Cuba Cuba 04-Aug-2003 28-Jan-2003 F HT treated CRF_19 D CRF_19 CRF_19 D True DQ113113 CB_302 CU Sancti Spiritus CU Cuba Cuba Cuba Cuba 04-Aug-2003 31-Dec-2002 M MSM treated CRF_19 D CRF_19 CRF_19 D True DQ113115 CB_303 CU La Habana CU Cuba Cuba Cuba Cuba 12-May-2003 06-Jul-1999 M MSM treated CRF_19 D CRF_19 CRF_19 D True DQ113116 CB_383 CU La Habana CU Cuba Cuba Cuba Cuba 04-Jun-2003 25-Nov-2003 M MSM treated CRF_19 D CRF_19 CRF_19 D True DQ113171 CB_389 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 12-May-2003 20-Jul-1999 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004317 CB_432 CU La Habana CU Cuba Cuba Cuba Cuba 02-Apr-2003 15-Oct-1988 M HT treated CRF_19 D CRF_19 CRF_19 D True MZ004313 CB_518 CU Sancti Spiritus CU Cuba Cuba Cuba Cuba 04-Aug-2003 15-Apr-2003 F HT treated CRF_19 D CRF_19 CRF_19 D True DQ113270 CB_521 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 14-Apr-2003 20-Dec-1995 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004314 CB_560 CU La Habana CU Cuba Cuba Cuba Cuba 25-May-2003 20-Mar-2001 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004320 CB_566 CU La Habana CU Cuba Cuba Cuba Cuba 12-May-2003 06-Oct-1998 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004316 CB_578 CU La Habana CU Cuba Cuba Cuba Cuba 25-May-2003 26-Dec-2000 M MSM treated CRF_19 D CRF_19 CRF_19 D True DQ113315 CB_595 CU La Habana CU Cuba Cuba Cuba Cuba 12-May-2003 12-Sep-2000 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004319 CB_658 CU La Habana CU Cuba Cuba Cuba Cuba 12-May-2003 02-Mar-1999 M MSM treated CRF_19 D CRF_19 CRF_19 D True DQ113365 CB_699 CU Villa Clara CU Cuba Cuba Cuba Cuba 14-Apr-2003 15-Jun-1995 F HT naive CRF_19 D CRF_19 CRF_19 D True DQ113385 CU-101-17 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004355 CU-1165-17 CU Mayabeque CU Cuba Cuba Cuba Cuba 14-Mar-2017 04-Nov-2014 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004363 CU-1426-17 CU La Habana CU Cuba Cuba Cuba Cuba 30-Mar-2017 23-Sep-1993 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004365 CU-1492-17 CU Sancti Spiritus CU Cuba Cuba Cuba Cuba 04-Apr-2017 07-Jul-2015 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004367 CU-1493-17 CU Sancti Spiritus CU Cuba Cuba Cuba Cuba 04-Apr-2017 06-Nov-2001 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004368 CU-167-18 CU La Habana CU Cuba Cuba Cuba Cuba 17-Jan-2018 21-Feb-2017 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004395 CU-1714-17 CU La Habana CU Cuba Cuba Cuba Cuba 17-Apr-2017 17-Nov-2015 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004369 CU-1734-17 CU La Habana CU Cuba Cuba Cuba Cuba 18-Apr-2017 23-Sep-2014 M Bisexual treated CRF_19 D CRF_19 CRF_19 D True MZ004370 CU-1880-17 CU Villa Clara CU Cuba Cuba Cuba Cuba 26-Apr-2017 09-Oct-2012 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004371 CU-2614-17 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 07-Jun-2017 05-Apr-2005 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004377 CU-2648-17 CU Villa Clara CU Cuba Cuba Cuba Cuba 09-Jun-2017 01-Apr-1997 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004378 CU-3020-17 CU La Habana CU Cuba Cuba Cuba Cuba 30-Jun-2017 12-Apr-2005 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004382 CU-3024-18 CU La Habana CU Cuba Cuba Cuba Cuba 10-Jul-2018 06-Jun-2006 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004403 CU-3111-17 CU Ciego de Avila CU Cuba Cuba Cuba Cuba 07-Jul-2017 24-Mar-2015 M treated CRF_19 D CRF_19 CRF_19 D True MZ004383 CU-3164-18 CU La Habana CU Cuba Cuba Cuba Cuba 18-Jul-2018 26-Jun-2018 M Bisexual treated CRF_19 D CRF_19 CRF_19 D True MZ004404 CU-3250-17 CU Santiago de Cuba CU Cuba Cuba Cuba Cuba 14-Jul-2017 30-Mar-2004 M treated CRF_19 D CRF_19 CRF_19 D True MZ004384 CU-3309-17 CU La Habana CU Cuba Cuba Cuba Cuba 17-Jul-2017 25-Jul-2017 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004386 CU-3457-17 CU La Habana CU Cuba Cuba Cuba Cuba 02-Aug-2017 15-Aug-2017 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004387 CU-3524-17 CU Villa Clara CU Cuba Cuba Cuba Cuba 08-Aug-2017 12-Oct-2004 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004388 CU-3623-18 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 24-Aug-2018 17-Jul-2012 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004405 CU-399-17 CU La Habana CU Cuba Cuba Cuba Cuba 25-Jan-2017 31-Dec-2005 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004358 CU-4290-17 CU Artemisa CU Cuba Cuba Cuba Cuba 05-Oct-2017 12-Feb-2013 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004390 CU-490-16 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004359 CU-575-17 CU La Habana CU Cuba Cuba Cuba Cuba 07-Feb-2017 30-Dec-2004 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004360 CU020-19 CU La Habana CU Cuba Cuba Cuba Cuba 16-Aug-2018 21-Aug-2018 M MSM naive CRF_19 A1 CRF_19 CRF_19 A1 True MZ004409 CU055-19 CU Mayabeque CU Cuba Cuba Cuba Cuba 19-Oct-2018 25-Oct-2016 M MSM naive CRF_19 A1 CRF_19 CRF_19 A1 True MZ004410 CU058-19 CU La Habana CU Cuba Cuba Cuba Cuba 08-Nov-2016 15-Nov-2016 M HT naive CRF_19 A1 CRF_19 CRF_19 A1 True MZ004411 CU060-19 CU La Habana CU Cuba Cuba Cuba Cuba 11-Aug-2016 22-Nov-2016 M HT naive CRF_19 A1 CRF_19 CRF_19 A1 True MZ004412 CU064-19 CU La Habana CU Cuba Cuba Cuba Cuba 02-Jul-2017 07-Feb-2017 F HT naive CRF_18 A1 A1 CRF_19 A1 True MZ004413 CU069-19 CU Santiago de Cuba CU Cuba Cuba Cuba Cuba 01-Dec-2016 11-Jan-2016 M MSM naive CRF_18 A1 A1 A1 A1 True MZ004414 CU072-19 CU La Habana CU Cuba Cuba Cuba Cuba 02-Jul-2017 11-Oct-2016 M MSM naive CRF_18 A1 A1 A1 A1 True MZ004415 CU076-19 CU La Habana CU Cuba Cuba Cuba Cuba 20-Jul-2016 19-Jul-2016 M MSM naive CRF_19 A1 CRF_19 CRF_19 A1 True MZ004416 CU096-19 CU La Habana CU Cuba Cuba Cuba Cuba 20-Nov-2018 30-Nov-2010 M MSM treated A1 A1 A1 A1 True MZ004417 CU1035-12 CU La Habana CU Cuba Cuba Cuba Cuba 17-Apr-2012 01-Apr-2008 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004253 CU108-16 CU Cienfuegos CU Cuba Cuba Cuba Cuba 13-Jan-2016 17-Mar-2015 M treated CRF_19 D CRF_19 CRF_19 D True MZ004336 CU1080-11 CU Santiago de Cuba CU Cuba Cuba Cuba Cuba 25-May-2011 24-Jun-2008 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004256 CU1089_2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004331 CU1104-16 CU La Habana CU Cuba Cuba Cuba Cuba 30-Mar-2016 29-Oct-2013 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004337 CU111-19 CU Matanzas CU Cuba Cuba Cuba Cuba 07-Sep-2018 11-Sep-2018 F HT naive CRF_19 A1 CRF_19 CRF_19 A1 True MZ004418 CU1139-11 CU La Habana CU Cuba Cuba Cuba Cuba 07-Jun-2011 03-Aug-2004 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004233 CU1141-11 CU La Habana CU Cuba Cuba Cuba Cuba 07-Jun-2011 07-Dec-2010 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004275 CU1144-11 CU La Habana CU Cuba Cuba Cuba Cuba 07-Jun-2011 27-Jan-2004 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004229 CU1155-14 CU La Habana CU Cuba Cuba Cuba Cuba 09-Apr-2014 05-Feb-1993 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004195 CU1159-12 CU Guantanamo CU Cuba Cuba Cuba Cuba 25-Apr-2012 18-Apr-2000 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004210 CU116-10 CU Sancti Spiritus CU Cuba Cuba Cuba Cuba 01-Feb-2010 24-Feb-1998 M MSM treated D D D CRF_19 D True JQ585365 CU1162-09 CU La Habana CU Cuba Cuba Cuba Cuba 17-Jun-2009 12-Sep-2000 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004214 CU117-10 CU La Habana CU Cuba Cuba Cuba Cuba 01-Feb-2010 24-Feb-1994 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585366 CU1180-12 CU Matanzas CU Cuba Cuba Cuba Cuba 02-May-2012 01-Nov-2011 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004289 CU1202-17 CU La Habana CU Cuba Cuba Cuba Cuba 15-Mar-2017 31-Dec-2009 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004364 CU1209-09 CU La Habana CU Cuba Cuba Cuba Cuba 24-Jun-2009 19-Mar-2002 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585279 CU121-14 CU La Habana CU Cuba Cuba Cuba Cuba 24-Jan-2014 03-May-2011 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004282 CU1241-12 CU La Habana CU Cuba Cuba Cuba Cuba 08-May-2012 10-Apr-2012 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004294 CU1264-11 CU La Habana CU Cuba Cuba Cuba Cuba 17-Jun-2011 03-May-2011 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585520 CU1267-09 CU La Habana CU Cuba Cuba Cuba Cuba 01-Jul-2009 12-Sep-2006 M MSM naive CRF_19 D CRF_19 CRF_19 D True JQ585282 CU1269-09 CU Holguin CU Cuba Cuba Cuba Cuba 03-Jul-2009 05-Jun-1996 F HT treated CRF_19 D CRF_19 CRF_19 D True JQ585284 CU1270-09 CU La Habana CU Cuba Cuba Cuba Cuba 03-Jul-2009 12-Jun-1996 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585285 CU1270-12 CU La Habana CU Cuba Cuba Cuba Cuba 09-May-2012 21-Apr-2009 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004262 CU1272-12 CU La Habana CU Cuba Cuba Cuba Cuba 09-May-2012 19-Feb-2008 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004252 CU1273-12 CU La Habana CU Cuba Cuba Cuba Cuba 09-May-2012 26-Apr-2011 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004281 CU1273_14 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004264 CU1283-09 CU La Habana CU Cuba Cuba Cuba Cuba 06-Jul-2009 24-Oct-2006 M MSM naive CRF_19 D CRF_19 CRF_19 D True JQ585286 CU1354-12 CU La Habana CU Cuba Cuba Cuba Cuba 15-May-2012 10-Apr-2011 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004287 CU1367-12 CU La Habana CU Cuba Cuba Cuba Cuba 15-May-2012 24-Aug-2004 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004234 CU1370-12 CU La Habana CU Cuba Cuba Cuba Cuba 15-May-2012 03-Aug-2010 M HT treated CRF_19 D CRF_19 CRF_19 D True MZ004269 CU1376-11 CU La Habana CU Cuba Cuba Cuba Cuba 01-Jul-2011 27-Sep-2000 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004215 CU1394_16 CU CU Cuba Cuba Cuba Cuba 19-Apr-2016 31-May-2016 M MSM treated CRF_19 A1 CRF_19 CRF_19 A1 True MT785601 CU1397-13 CU La Habana CU Cuba Cuba Cuba Cuba 15-May-2013 16-Nov-2010 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004273 CU1416-11 CU Artemisa CU Cuba Cuba Cuba Cuba 07-Jul-2011 09-Aug-2011 M MSM naive CRF, B D D CRF_19 D True MZ004283 CU1437-17 CU CU Cuba Cuba Cuba Cuba 31-Mar-2017 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004366 CU145-12 CU Santiago de Cuba CU Cuba Cuba Cuba Cuba 24-Jan-2012 31-Jan-2012 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004292 CU1452-12 CU Artemisa CU Cuba Cuba Cuba Cuba 22-May-2012 12-Nov-2002 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004224 CU1456-11 CU La Habana CU Cuba Cuba Cuba Cuba 13-Jul-2011 04-Feb-1997 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004197 CU1483-09 CU La Habana CU Cuba Cuba Cuba Cuba 07-Aug-2009 07-Jul-1998 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585297 CU1484-09 CU La Habana CU Cuba Cuba Cuba Cuba 10-Aug-2009 30-Mar-1999 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585298 CU1492-12 CU La Habana CU Cuba Cuba Cuba Cuba 28-May-2012 03-Mar-2009 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004261 CU1495_16 CU CU Cuba Cuba Cuba Cuba 26-Apr-2016 03-Dec-2002 M MSM treated CRF_19 A1 CRF_19 CRF_19 A1 True MZ004419 CU1496-13 CU Guantanamo CU Cuba Cuba Cuba Cuba 22-May-2013 31-Dec-2012 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004302 CU1497-09 CU Villa Clara CU Cuba Cuba Cuba Cuba 12-Aug-2009 17-Dec-1996 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585299 CU1499-18 CU La Habana CU Cuba Cuba Cuba Cuba 12-Apr-2018 09-Sep-2014 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004398 CU150-14 CU La Habana CU Cuba Cuba Cuba Cuba 24-Jan-2014 11-Jun-1991 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004193 CU1528-2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004332 CU1528_15 CU CU Cuba Cuba Cuba Cuba 07-May-2015 13-May-2008 M MSM treated CRF_19 A1 CRF_19 CRF_19 A1 True MT785594 CU1567-13 CU Villa Clara CU Cuba Cuba Cuba Cuba 27-May-2013 11-Feb-1997 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004198 CU1609_14 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004285 CU1627-09 CU La Habana CU Cuba Cuba Cuba Cuba 04-Sep-2009 03-Jul-2001 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585302 CU1640-09 CU La Habana CU Cuba Cuba Cuba Cuba 07-Sep-2009 12-Aug-1997 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585304 CU1664-12 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 12-Jun-2012 01-Feb-2011 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004278 CU1665-12 CU La Habana CU Cuba Cuba Cuba Cuba 12-Jun-2012 10-Jun-1992 M HT treated CRF_19 D CRF_19 CRF_19 D True MZ004194 CU1683-16 CU La Habana CU Cuba Cuba Cuba Cuba 09-May-2016 01-Jul-1997 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004338 CU1683_16 CU CU Cuba Cuba Cuba Cuba 09-May-2016 01-Jul-1997 M MSM treated CRF_19 A1 CRF_19 CRF_19 A1 True MT785603 CU1685_16 CU CU Cuba Cuba Cuba Cuba 10-May-2016 11-Nov-2014 F HT treated CRF_19 A1 CRF_19 CRF_19 A1 True MT785604 CU1708-09 CU La Habana CU Cuba Cuba Cuba Cuba 17-Sep-2009 22-Jun-1999 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585308 CU1760_16 CU CU Cuba Cuba Cuba Cuba 11-May-2016 22-Oct-2013 M HT treated CRF_19 A1 CRF_19 CRF_19 A1 True MZ004420 CU1761-16 CU La Habana CU Cuba Cuba Cuba Cuba 11-May-2016 17-May-2016 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004339 CU1761_16 CU CU Cuba Cuba Cuba Cuba 11-May-2016 17-May-2016 F HT treated CRF_19 A1 CRF_19 CRF_19 A1 True MZ004421 CU1794-14 CU La Habana CU Cuba Cuba Cuba Cuba 21-May-2014 11-Apr-2006 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004243 CU1805-09 CU Villa Clara CU Cuba Cuba Cuba Cuba 05-Oct-2009 13-Jul-1994 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585313 CU1806-09 CU La Habana CU Cuba Cuba Cuba Cuba 05-Oct-2009 24-Jun-2003 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585314 CU1882-13 CU La Habana CU Cuba Cuba Cuba Cuba 19-Jun-2013 02-Nov-1999 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004209 CU1892-09 CU La Habana CU Cuba Cuba Cuba Cuba 13-Oct-2009 26-Feb-2002 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585315 CU1895-09 CU La Habana CU Cuba Cuba Cuba Cuba 13-Oct-2009 17-Dec-2002 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585318 CU1898-16 CU La Habana CU Cuba Cuba Cuba Cuba 20-May-2016 07-Nov-2006 M treated CRF, 19 D D CRF_19 D True MZ004340 CU1906-11 CU La Habana CU Cuba Cuba Cuba Cuba 15-Sep-2011 01-Dec-2009 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004268 CU1908_14 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004191 CU1922-13 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 19-Jun-2013 12-Dec-2000 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004217 CU1925-13 CU Villa Clara CU Cuba Cuba Cuba Cuba 20-Jun-2013 19-Mar-1988 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004189 CU1937-11 CU La Habana CU Cuba Cuba Cuba Cuba 20-Sep-2011 29-May-2001 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004221 CU194-11 CU Las Tunas CU Cuba Cuba Cuba Cuba 24-Jan-2011 07-Dec-2010 M HT naive CRF_19 D CRF_19 CRF_19 D True JQ585494 CU1952-13 CU La Habana CU Cuba Cuba Cuba Cuba 24-Jun-2013 14-Oct-2008 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004259 CU1955-11 CU Matanzas CU Cuba Cuba Cuba Cuba 20-Sep-2011 03-Jun-2003 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004227 CU1959-09 CU La Habana CU Cuba Cuba Cuba Cuba 22-Oct-2009 21-Mar-2000 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585326 CU1968-13 CU Cienfuegos CU Cuba Cuba Cuba Cuba 24-Jun-2013 23-Apr-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004309 CU1975-11 CU Camaguey CU Cuba Cuba Cuba Cuba 21-Sep-2011 24-Jun-2003 M HT treated D D D D D True MZ004228 CU1982-12 CU La Habana CU Cuba Cuba Cuba Cuba 11-Jul-2012 15-Nov-2011 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004290 CU1998-10 CU Camaguey CU Cuba Cuba Cuba Cuba 09-Dec-2010 20-Apr-2010 M MSM naive CRF_19 D CRF_19 CRF_19 D True JQ585448 CU2015-09 CU La Habana CU Cuba Cuba Cuba Cuba 28-Oct-2009 02-Jun-2009 M MSM naive CRF_19 D CRF_19 CRF_19 D True JQ585347 CU203-14 CU Santiago de Cuba CU Cuba Cuba Cuba Cuba 29-Jan-2014 13-Feb-2007 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004249 CU2043-09 CU La Habana CU Cuba Cuba Cuba Cuba 02-Nov-2009 07-Feb-2006 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585337 CU2056-11 CU Granma CU Cuba Cuba Cuba Cuba 29-Sep-2011 02-May-2006 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004246 CU2086-10 CU La Habana CU Cuba Cuba Cuba Cuba 22-Dec-2010 16-Jun-2009 M MSM naive CRF_19 D CRF_19 CRF_19 D True JQ585470 CU2102-09 CU La Habana CU Cuba Cuba Cuba Cuba 11-Nov-2009 15-Sep-2009 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004265 CU2135_16 CU CU Cuba Cuba Cuba Cuba 07-Jun-2016 08-Dec-2015 F HT treated CRF_19 A1,D CRF_19 CRF_19 D A1 True MZ004341 MZ004423 CU213_16 CU CU Cuba Cuba Cuba Cuba 19-Jan-2016 03-Aug-2004 M MSM treated CRF_19 A1 CRF_19 CRF_19 A1 True MT785599 CU2170-12 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 30-Jul-2012 10-Nov-2009 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004267 CU2170-13 CU Matanzas CU Cuba Cuba Cuba Cuba 18-Jun-2013 26-Feb-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004308 CU2171-13 CU Matanzas CU Cuba Cuba Cuba Cuba 18-Jun-2013 19-Feb-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004307 CU2173-13 CU Matanzas CU Cuba Cuba Cuba Cuba 18-Jun-2013 15-Jan-2013 M Bisexual naive CRF_19 D CRF_19 CRF_19 D True MZ004304 CU2182-09 CU La Habana CU Cuba Cuba Cuba Cuba 20-Nov-2009 15-Feb-2005 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004235 CU2197-17 CU La Habana CU Cuba Cuba Cuba Cuba 16-May-2017 28-Apr-1998 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004372 CU2209-11 CU Artemisa CU Cuba Cuba Cuba Cuba 14-Oct-2011 06-Oct-1997 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004200 CU2226-11 CU La Habana CU Cuba Cuba Cuba Cuba 18-Oct-2011 26-Apr-2005 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004237 CU2241_16 CU CU Cuba Cuba Cuba Cuba 15-Jun-2016 20-Nov-2007 M MSM treated CRF_19 A1,D CRF_19 CRF_19 D A1 True MZ004342 MT785608 CU225-12 CU Granma CU Cuba Cuba Cuba Cuba 31-Jan-2012 22-Nov-2005 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004241 CU225-18 CU La Habana CU Cuba Cuba Cuba Cuba 23-Jan-2018 08-Dec-2015 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004396 CU2281-16 CU Cienfuegos CU Cuba Cuba Cuba Cuba 10-Jun-2016 19-Aug-2008 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004343 CU229-12 CU La Habana CU Cuba Cuba Cuba Cuba 31-Jan-2012 30-Mar-1999 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004206 CU2291-17 CU Guantanamo CU Cuba Cuba Cuba Cuba 22-May-2017 05-Sep-2006 M treated CRF_19 D CRF_19 CRF_19 D True MZ004373 CU2297-12 CU La Habana CU Cuba Cuba Cuba Cuba 08-Aug-2012 09-Mar-2004 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004230 CU2302-2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004333 CU2303_15 CU CU Cuba Cuba Cuba Cuba 09-Jul-2015 M MSM CRF_19 A1 CRF_19 CRF_19 A1 True MZ004424 CU2304_15 CU CU Cuba Cuba Cuba Cuba 09-Jul-2015 10-Mar-1998 F HT treated CRF_19 A1 CRF_19 CRF_19 A1 True MT785596 CU2304_2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004334 CU2316-11 CU Villa Clara CU Cuba Cuba Cuba Cuba 25-Oct-2011 31-Dec-2000 M MSM treated CRF, B D D CRF_19 D True MZ004218 CU2319-17 CU Artemisa CU Cuba Cuba Cuba Cuba 23-May-2017 15-Oct-2013 M HT treated CRF_19 D CRF_19 CRF_19 D True MZ004374 CU2325-18 CU La Habana CU Cuba Cuba Cuba Cuba 30-May-2018 14-Feb-2017 M HT treated CRF_19 D CRF_19 CRF_19 D True MZ004399 CU233-17 CU La Habana CU Cuba Cuba Cuba Cuba 18-Jan-2017 05-May-2007 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004357 CU2364-11 CU Sancti Spiritus CU Cuba Cuba Cuba Cuba 26-Oct-2011 30-Nov-2010 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004274 CU2406-11 CU La Habana CU Cuba Cuba Cuba Cuba 01-Nov-2011 10-May-2005 M MSM treated D D D CRF_19 D True MZ004238 CU2410-2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004335 CU2421-17 CU Granma CU Cuba Cuba Cuba Cuba 29-May-2017 20-Aug-2013 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004375 CU2451_16 CU CU Cuba Cuba Cuba Cuba 28-Jun-2016 22-Jul-2014 F HT treated CRF_19 A1,B,G A1,B,G A1,B,G B,G A1 False MZ004344 MT785609 CU2452-18 CU La Habana CU Cuba Cuba Cuba Cuba 06-Jun-2018 17-Jul-1990 M HT treated A1 A1,A3 A1,A3 A1,A3 A1,A3 A1 A1 False MZ004400 MZ004406 CU2456-11 CU La Habana CU Cuba Cuba Cuba Cuba 07-Nov-2011 14-Sep-2010 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004272 CU2456-16 CU La Habana CU Cuba Cuba Cuba Cuba 29-Jun-2016 01-Mar-2011 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004345 CU2479-17 CU Artemisa CU Cuba Cuba Cuba Cuba 31-May-2017 19-Feb-2008 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004376 CU2483-11 CU La Habana CU Cuba Cuba Cuba Cuba 08-Nov-2011 18-Apr-2006 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004244 CU2492_16 CU CU Cuba Cuba Cuba Cuba 29-Jun-2016 22-Feb-2000 M MSM treated CRF_18 A1,F1,G A1,F1,G A1,F1,G F1,G A1 False MZ004346 MT785621 CU2644_16 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004347 CU2647_15 CU CU Cuba Cuba Cuba Cuba 10-Aug-2015 16-Dec-2008 F HT treated CRF_19 A1 CRF_19 CRF_19 A1 True MZ004422 CU2669-11 CU La Habana CU Cuba Cuba Cuba Cuba 23-Nov-2011 22-Mar-2011 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004279 CU2677_16 CU CU Cuba Cuba Cuba Cuba 14-Jul-2016 31-Dec-2002 M MSM treated CRF_19 A1,D CRF_19 CRF_19 D A1 True MZ004348 MT785610 CU2711-12 CU La Habana CU Cuba Cuba Cuba Cuba 19-Sep-2012 31-Dec-2001 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004223 CU2796-13 CU Matanzas CU Cuba Cuba Cuba Cuba 19-Sep-2013 07-Aug-2012 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004297 CU2798-13 CU Ciego de Avila CU Cuba Cuba Cuba Cuba 19-Sep-2013 23-Sep-2008 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004258 CU2800-11 CU La Habana CU Cuba Cuba Cuba Cuba 06-Dec-2011 11-Nov-1993 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004196 CU2804-11 CU La Habana CU Cuba Cuba Cuba Cuba 07-Dec-2011 05-Apr-2011 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004280 CU2816-18 CU La Habana CU Cuba Cuba Cuba Cuba 28-Jun-2018 31-Dec-1990 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004401 CU2826-11 CU La Habana CU Cuba Cuba Cuba Cuba 09-Dec-2011 20-Jul-2004 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004232 CU2864-11 CU La Habana CU Cuba Cuba Cuba Cuba 13-Dec-2011 24-Oct-2006 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004247 CU2865-11 CU La Habana CU Cuba Cuba Cuba Cuba 13-Dec-2011 29-Sep-1998 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004205 CU2887-12 CU La Habana CU Cuba Cuba Cuba Cuba 03-Oct-2012 28-Aug-2012 M Bisexual naive CRF_19 D CRF_19 CRF_19 D True MZ004298 CU2890-18 CU La Habana CU Cuba Cuba Cuba Cuba 02-Jul-2018 30-Jan-2018 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004402 CU2936-17 CU Sancti Spiritus CU Cuba Cuba Cuba Cuba 27-Jun-2017 24-Jan-2012 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004379 CU2938-17 CU La Habana CU Cuba Cuba Cuba Cuba 27-Jun-2017 28-Jan-2003 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004380 CU2947-11 CU La Habana CU Cuba Cuba Cuba Cuba 20-Dec-2011 03-May-1988 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004190 CU297-12 CU La Habana CU Cuba Cuba Cuba Cuba 07-Feb-2012 10-Jun-2008 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004255 CU2988-16 CU La Habana CU Cuba Cuba Cuba Cuba 10-Aug-2016 08-Mar-2016 F naive CRF_19 D CRF_19 CRF_19 D True MZ004349 CU2988_16 CU CU Cuba Cuba Cuba Cuba 10-Aug-2016 15-Mar-2016 F HT naive CRF_19 A1 CRF_19 CRF_19 A1 True MT785611 CU3002-11 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 28-Dec-2011 22-Jun-2004 M HT treated CRF_19 D CRF_19 CRF_19 D True MZ004231 CU3002-17 CU Las Tunas CU Cuba Cuba Cuba Cuba 29-Jun-2017 06-Dec-2005 M naive CRF_19 D CRF_19 CRF_19 D True MZ004381 CU3004-11 CU La Habana CU Cuba Cuba Cuba Cuba 28-Dec-2011 04-Oct-2011 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004288 CU3042-12 CU La Habana CU Cuba Cuba Cuba Cuba 16-Oct-2012 15-Jul-2008 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004257 CU3069-13 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 21-Oct-2013 24-Dec-2002 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004226 CU3134-13 CU Cienfuegos CU Cuba Cuba Cuba Cuba 25-Oct-2013 20-Oct-2009 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004266 CU322-11 CU La Habana CU Cuba Cuba Cuba Cuba 03-Feb-2011 09-Oct-2001 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585490 CU3264-17 CU La Habana CU Cuba Cuba Cuba Cuba 14-Jul-2017 05-Oct-2010 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004385 CU3277-13 CU Villa Clara CU Cuba Cuba Cuba Cuba 07-Nov-2013 03-Apr-2001 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004220 CU330-13 CU La Habana CU Cuba Cuba Cuba Cuba 13-Feb-2013 11-Jul-2000 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004212 CU3325-12 CU Villa Clara CU Cuba Cuba Cuba Cuba 09-Nov-2012 21-Jan-1991 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004192 CU3356-12 CU La Habana CU Cuba Cuba Cuba Cuba 14-Nov-2012 14-Feb-2012 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004293 CU3357-12 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 13-Nov-2012 27-Sep-2000 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004216 CU3419-13 CU Matanzas CU Cuba Cuba Cuba Cuba 05-Nov-2013 24-Jul-2012 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004296 CU3420-13 CU Matanzas CU Cuba Cuba Cuba Cuba 05-Nov-2013 15-Jan-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004305 CU3434-12 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 20-Nov-2012 29-Jun-1999 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004207 CU345-10 CU Villa Clara CU Cuba Cuba Cuba Cuba 26-Mar-2010 24-Dec-1996 F HT treated CRF_19 D CRF_19 CRF_19 D True JQ585387 CU357-11 CU La Habana CU Cuba Cuba Cuba Cuba 11-Feb-2011 27-Mar-2001 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004219 CU3726-16 CU La Habana CU Cuba Cuba Cuba Cuba 12-Oct-2016 18-Apr-2006 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004350 CU378-2018 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004397 CU380-12 CU La Habana CU Cuba Cuba Cuba Cuba 14-Feb-2012 04-Jul-2000 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004211 CU386-12 CU Villa Clara CU Cuba Cuba Cuba Cuba 15-Feb-2012 10-Mar-1998 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004201 CU3866-16 CU La Habana CU Cuba Cuba Cuba Cuba 20-Oct-2016 17-Nov-1998 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004351 CU3866_16 CU CU Cuba Cuba Cuba Cuba 20-Oct-2016 17-Nov-1998 M MSM treated CRF_19 A1 CRF_19 CRF_19 A1 True MT785612 CU3915-16 CU La Habana CU Cuba Cuba Cuba Cuba 25-Oct-2016 23-May-2006 M treated CRF_19 D CRF_19 CRF_19 D True MZ004352 CU3915_16 CU CU Cuba Cuba Cuba Cuba 25-Oct-2016 23-May-2006 M MSM treated CRF_19 A1 CRF_19 CRF_19 A1 True MT785613 CU3922-17 CU La Habana CU Cuba Cuba Cuba Cuba 08-Sep-2017 17-Jan-2006 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004389 CU393-13 CU Santiago de Cuba CU Cuba Cuba Cuba Cuba 20-Feb-2013 17-Apr-2012 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004295 CU3949_16 CU CU Cuba Cuba Cuba Cuba 01-Dec-2015 29-Jan-2008 M MSM treated CRF_19 A1 CRF_19 CRF_19 A1 True MT785598 CU40-12 CU Artemisa CU Cuba Cuba Cuba Cuba 10-Jan-2012 10-Mar-1998 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004202 CU403-10 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 12-Apr-2010 24-Jan-2006 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585455 CU4035-16 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 02-Nov-2016 12-Jun-2007 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004353 CU4087-16 CU La Habana CU Cuba Cuba Cuba Cuba 04-Nov-2016 08-Oct-2013 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004354 CU422-11 CU La Habana CU Cuba Cuba Cuba Cuba 22-Feb-2011 19-Sep-2006 M MSM naive CRF_19 D CRF_19 CRF_19 D True JQ585500 CU426_2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004324 CU427-2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004325 CU442-12 CU La Habana CU Cuba Cuba Cuba Cuba 21-Feb-2012 08-Apr-2008 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004254 CU443-12 CU La Habana CU Cuba Cuba Cuba Cuba 21-Feb-2012 08-Aug-2000 F HT treated D D D CRF_19 D True MZ004213 CU444-11 CU La Habana CU Cuba Cuba Cuba Cuba 23-Feb-2011 15-Mar-2005 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004236 CU445-12 CU La Habana CU Cuba Cuba Cuba Cuba 21-Feb-2012 09-Dec-2008 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004260 CU4485-18 CU La Habana CU Cuba Cuba Cuba Cuba 17-Oct-2018 03-Aug-2004 M MSM treated CRF_19 A1 CRF_19 CRF_19 A1 True MZ004407 CU45-12 CU La Habana CU Cuba Cuba Cuba Cuba 10-Jan-2012 24-May-2005 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004239 CU461-09 CU Artemisa CU Cuba Cuba Cuba Cuba 09-Mar-2009 31-Dec-1998 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585253 CU47-12 CU La Habana CU Cuba Cuba Cuba Cuba 10-Jan-2012 18-Apr-2006 M MSM treated CRF, B D D CRF_19 D True MZ004245 CU4739-18 CU Villa Clara CU Cuba Cuba Cuba Cuba 01-Nov-2018 12-Oct-2004 F HT treated CRF_19 A1 A1 CRF_19 A1 A1 False MZ004408 CU4764-17 CU Guantanamo CU Cuba Cuba Cuba Cuba 01-Nov-2017 20-Jan-2015 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004391 CU4973-17 CU La Habana CU Cuba Cuba Cuba Cuba 13-Nov-2017 31-Jan-2017 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004392 CU503-10 CU La Habana CU Cuba Cuba Cuba Cuba 06-May-2010 09-Oct-1991 F HT treated CRF_19 D CRF_19 CRF_19 D True JQ585401 CU505-13 CU Ciego de Avila CU Cuba Cuba Cuba Cuba 27-Feb-2013 20-Dec-2011 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004291 CU5309-17 CU La Habana CU Cuba Cuba Cuba Cuba 04-Dec-2017 16-Apr-2002 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004393 CU54-11 CU La Habana CU Cuba Cuba Cuba Cuba 11-Jan-2011 24-Aug-1995 F HT treated CRF_19 D CRF_19 CRF_19 D True JQ585475 CU546-11 CU La Habana CU Cuba Cuba Cuba Cuba 07-Mar-2011 29-Mar-2011 M MSM naive CRF_19 D CRF_19 CRF_19 D True JQ585509 CU547-11 CU Mayabeque CU Cuba Cuba Cuba Cuba 07-Mar-2011 21-Dec-2010 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004277 CU547_2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004326 CU5657-2017 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004394 CU578-12 CU La Habana CU Cuba Cuba Cuba Cuba 06-Mar-2012 21-Nov-2006 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004248 CU57_14 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004311 CU582_2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004327 CU585_2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004328 CU58_14 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004312 CU609-13 CU Holguin CU Cuba Cuba Cuba Cuba 08-Mar-2013 26-Nov-2002 M Bisexual treated CRF_19 D CRF_19 CRF_19 D True MZ004225 CU612-13 CU Mayabeque CU Cuba Cuba Cuba Cuba 11-Mar-2013 04-Sep-2012 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004299 CU614-13 CU Matanzas CU Cuba Cuba Cuba Cuba 11-Mar-2013 28-Feb-2006 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004242 CU615-13 CU Matanzas CU Cuba Cuba Cuba Cuba 11-Mar-2013 09-Aug-2011 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004284 CU623_14 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004263 CU626_14 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004301 CU627_14 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004300 CU630-13 CU Mayabeque CU Cuba Cuba Cuba Cuba 11-Mar-2013 24-Aug-2010 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004270 CU631-13 CU Mayabeque CU Cuba Cuba Cuba Cuba 11-Mar-2013 24-Aug-2010 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004271 CU645-09 CU La Habana CU Cuba Cuba Cuba Cuba 03-Apr-2009 04-Oct-2005 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585259 CU646-09 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 03-Apr-2009 20-Feb-2001 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585260 CU662_2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004329 CU668-12 CU La Habana CU Cuba Cuba Cuba Cuba 14-Mar-2012 09-Aug-2011 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004286 CU699-12 CU La Habana CU Cuba Cuba Cuba Cuba 13-Mar-2012 04-Dec-2001 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004222 CU705-12 CU Matanzas CU Cuba Cuba Cuba Cuba 16-Mar-2012 26-Aug-1997 F HT treated CRF_19 D CRF_19 CRF_19 D True MZ004199 CU712-13 CU La Habana CU Cuba Cuba Cuba Cuba 18-Mar-2013 12-Oct-1999 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004208 CU736-10 CU La Habana CU Cuba Cuba Cuba Cuba 22-Jun-2010 14-Dec-2004 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585412 CU749-09 CU La Habana CU Cuba Cuba Cuba Cuba 15-Apr-2009 31-Dec-2000 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585263 CU756-13 CU La Habana CU Cuba Cuba Cuba Cuba 23-Mar-2013 12-Feb-2013 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004306 CU783-12 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 22-Mar-2012 31-May-2005 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004240 CU816-12 CU La Habana CU Cuba Cuba Cuba Cuba 27-Mar-2012 19-Oct-2007 M MSM naive D D D CRF_19 D True MZ004250 CU821_16 CU CU Cuba Cuba Cuba Cuba 01-Mar-2016 21-Nov-2000 M MSM treated CRF_19 A1 CRF_19 CRF_19 A1 True MT785600 CU845-09 CU La Habana CU Cuba Cuba Cuba Cuba 24-Apr-2009 03-Dec-2002 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585267 CU850-14 CU La Habana CU Cuba Cuba Cuba Cuba 20-Mar-2014 09-Jul-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004310 CU850-17 CU La Habana CU Cuba Cuba Cuba Cuba 24-Feb-2017 31-Dec-2010 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004361 CU881-11 CU La Habana CU Cuba Cuba Cuba Cuba 26-Apr-2011 12-May-1998 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004204 CU893-17 CU La Habana CU Cuba Cuba Cuba Cuba 27-Feb-2017 17-Aug-1999 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004362 CU90-10 CU La Habana CU Cuba Cuba Cuba Cuba 25-Jan-2010 24-Feb-1994 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585361 CU908-13 CU La Habana CU Cuba Cuba Cuba Cuba 02-Apr-2013 15-Jan-2013 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004303 CU939-11 CU La Habana CU Cuba Cuba Cuba Cuba 05-May-2011 29-Jan-2008 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004251 CU949-09 CU La Habana CU Cuba Cuba Cuba Cuba 14-May-2009 24-Dec-2002 M MSM treated CRF_19 D CRF_19 CRF_19 D True JQ585268 CU961-12 CU La Habana CU Cuba Cuba Cuba Cuba 10-Apr-2012 14-Dec-2010 M MSM treated CRF_19 D CRF_19 CRF_19 D True MZ004276 CU977_2015 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004330 CU981_14 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004203 CUNT13 CU CU Cuba Cuba Cuba Cuba A1 A1 CRF_19 A1 True MZ004426 CUNT14 CU CU Cuba Cuba Cuba Cuba A1 A1 A1 A1 True MZ004427 CUNT16 CU CU Cuba Cuba Cuba Cuba A1 A1 CRF_19 A1 True MZ004428 CUT12 CU CU Cuba Cuba Cuba Cuba A1 A1 CRF_19 A1 True MZ004431 CUT15 CU CU Cuba Cuba Cuba Cuba A1 A1 A1 A1 True MZ004432 CUT21 CU CU Cuba Cuba Cuba Cuba A1 A1 CRF_19 A1 True MZ004425 CUT22 CU CU Cuba Cuba Cuba Cuba A1 A1 CRF_19 A1 True MZ004430 CUT4 CU CU Cuba Cuba Cuba Cuba A1 A1 CRF_19 A1 True MZ004429 Chronic-AIDS7 CU La Habana CU Cuba Cuba Cuba Cuba 29-May-2008 09-Sep-2003 M HT naive CRF, F1 D D CRF_19 D True KP688153 KP688225 DQ168573 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2001 G G G DQ168573 DQ168573 DQ168575 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2001 G G G DQ168575 DQ168575 DQ168576 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2001 G G G DQ168576 DQ168576 DQ168579 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2001 G G G DQ168579 DQ168579 DQ676872 LA abroad AU Australia Australia Australia and New Zealand Oceania 2003 A1 A1 A1 DQ676872 DQ676872 EF633445 LA abroad ZA South Africa Southern Africa Sub-Saharan Africa Africa 1990 D D D EF633445 EF633445 EU110088 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2001 A1 A1 A1 EU110088 EU110088 EU110092 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2002 A1 A1 A1 EU110092 EU110092 EU110094 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2002 A1 A1 A1 EU110094 EU110094 EU110095 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2001 A1 A1 A1 EU110095 EU110095 EU786670 LA abroad ES Spain Southern Europe Europe Europe 2005 G G G EU786670 EU786670 FJ388893 LA abroad CY Cyprus Western Asia Asia Asia 2005 A1 A1 A1 FJ388893 FJ388893 FJ388903 LA abroad CY Cyprus Western Asia Asia Asia 2005 A1 A1 A1 FJ388903 FJ388903 FJ388909 LA abroad CY Cyprus Western Asia Asia Asia 2005 A1 A1 A1 FJ388909 FJ388909 FJ388925 LA abroad CY Cyprus Western Asia Asia Asia 2005 A1 A1 A1 FJ388925 FJ388925 FJ388938 LA abroad CY Cyprus Western Asia Asia Asia 2005 A1 A1 A1 FJ388938 FJ388938 FJ388942 LA abroad CY Cyprus Western Asia Asia Asia 2005 A1 A1 A1 FJ388942 FJ388942 FJ388943 LA abroad CY Cyprus Western Asia Asia Asia 2006 A1 A1 A1 FJ388943 FJ388943 FJ388945 LA abroad CY Cyprus Western Asia Asia Asia 2006 D D D FJ388945 FJ388945 FJ389363 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2004 G G G FJ389363 FJ389363 FJ389364 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2004 G G G FJ389364 FJ389364 FJ389365 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2004 G G G FJ389365 FJ389365 FJ389366 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2004 G G G FJ389366 FJ389366 FJ389367 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2001 G G G FJ389367 FJ389367 FJ623475 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623475 FJ623475 FJ623476 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623476 FJ623476 FJ623477 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623477 FJ623477 FJ623478 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623478 FJ623478 FJ623479 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623479 FJ623479 FJ623480 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623480 FJ623480 FJ623481 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623481 FJ623481 FJ623482 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623482 FJ623482 FJ623483 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623483 FJ623483 FJ623485 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623485 FJ623485 FJ623486 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623486 FJ623486 FJ623487 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623487 FJ623487 FJ623488 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 FJ623488 FJ623488 FJ670519 LA abroad ES Spain Southern Europe Europe Europe 2005 A1 A1 A1 FJ670519 FJ670519 FJ670523 LA abroad ES Spain Southern Europe Europe Europe 2006 A1 A1 A1 FJ670523 FJ670523 FJ670530 LA abroad ES Spain Southern Europe Europe Europe 2008 G G G FJ670530 FJ670530 FR846408 LA abroad PT Portugal Southern Europe Europe Europe G G G FR846408 FR846408 FR846409 LA abroad PT Portugal Southern Europe Europe Europe G G G FR846409 FR846409 FR846410 LA abroad PT Portugal Southern Europe Europe Europe G G G FR846410 FR846410 GM11 CU Guantanamo CU Cuba Cuba Cuba Cuba 21-Jun-2013 07-May-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004157 GU362882 LA abroad ES Spain Southern Europe Europe Europe 2009 G G G GU362882 GU362882 HO114 CU Holguin CU Cuba Cuba Cuba Cuba 03-May-2014 28-Jan-2014 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004158 HO2 CU Holguin CU Cuba Cuba Cuba Cuba 17-Apr-2013 04-Sep-2013 M HT naive CRF_19 D CRF_19 CRF_19 D True MZ004159 IJ2 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004160 JF683759 LA abroad CY Cyprus Western Asia Asia Asia 2007 A1 A1 A1 JF683759 JF683759 JF683760 LA abroad CY Cyprus Western Asia Asia Asia 2007 A1 A1 A1 JF683760 JF683760 JF683767 LA abroad CY Cyprus Western Asia Asia Asia 2008 A1 A1 A1 JF683767 JF683767 JF683779 LA abroad CY Cyprus Western Asia Asia Asia 2008 A1 A1 A1 JF683779 JF683779 JF683782 LA abroad CY Cyprus Western Asia Asia Asia 2008 A1 A1 A1 JF683782 JF683782 JF683783 LA abroad CY Cyprus Western Asia Asia Asia 2008 A1 A1 A1 JF683783 JF683783 JN106043 LA abroad CN China Eastern Asia Asia Asia 2008 G G G JN106043 JN106043 JN248582 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2008 G G G JN248582 JN248582 JN248584 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2009 G G G JN248584 JN248584 JN248586 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2009 G G G JN248586 JN248586 JN248591 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2009 G G G JN248591 JN248591 JN248593 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2009 G G G JN248593 JN248593 JQ403079 LA abroad US United States of America Northern America Northern America Americas 2007 D D D JQ403079 JQ403079 JX140670 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2010 D D D JX140670 JX140670 JX140676 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2010 G G G JX140676 JX140676 JX236668 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2005 D D D JX236668 JX236668 JX236669 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2007 A1 A1 A1 JX236669 JX236669 JX236670 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2007 D D D JX236670 JX236670 JX236671 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2007 A1 A1 A1 JX236671 JX236671 JX236672 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2008 D D D JX236672 JX236672 JX236673 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2007 D D D JX236673 JX236673 JX236676 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2007 A1 A1 A1 JX236676 JX236676 JX236677 LA abroad RW Rwanda Eastern Africa Sub-Saharan Africa Africa 2007 A1 A1 A1 JX236677 JX236677 JX236678 LA abroad RW Rwanda Eastern Africa Sub-Saharan Africa Africa 2007 A1 A1 A1 JX236678 JX236678 JX236679 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2007 D D D JX236679 JX236679 K03454 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 1983 D D D K03454 K03454 KF716472 LA abroad RW Rwanda Eastern Africa Sub-Saharan Africa Africa 2011 A1 A1 A1 KF716472 KF716472 KF716474 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2011 A1 A1 A1 KF716474 KF716474 KF716475 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2011 A1 A1 A1 KF716475 KF716475 KF716476 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2011 D D D KF716476 KF716476 KF716477 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2009 G G G KF716477 KF716477 KF716478 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2009 A1 A1 A1 KF716478 KF716478 KF716479 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2010 D D D KF716479 KF716479 KF716480 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2011 D D D KF716480 KF716480 KF716486 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2011 A1 A1 A1 KF716486 KF716486 KF859745 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2011 A1 A1 A1 KF859745 KF859745 KJ787683 LA abroad BR Brazil South America South America Americas 2010 D D D KJ787683 KJ787683 KJ787684 LA abroad BR Brazil South America South America Americas 2010 D D D KJ787684 KJ787684 KJ948658 LA abroad ZA South Africa Southern Africa Sub-Saharan Africa Africa 2000 A1 A1 A1 KJ948658 KJ948658 KJ948662 LA abroad ZA South Africa Southern Africa Sub-Saharan Africa Africa 2001 G G G KJ948662 KJ948662 KP109490 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 2009 A1 A1 A1 KP109490 KP109490 KP109502 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2010 G G G KP109502 KP109502 KP718915 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2006 G G G KP718915 KP718915 KP718918 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2007 A1 A1 A1 KP718918 KP718918 KP718923 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2007 G G G KP718923 KP718923 KP718925 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2008 G G G KP718925 KP718925 KP718928 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2008 A1 A1 A1 KP718928 KP718928 KR017776 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2007 G G G KR017776 KR017776 KT022360 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KT022360 KT022360 KT022361 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KT022361 KT022361 KT022363 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KT022363 KT022363 KT022364 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KT022364 KT022364 KT022365 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KT022365 KT022365 KT022367 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KT022367 KT022367 KT022368 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KT022368 KT022368 KT022369 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KT022369 KT022369 KT022370 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KT022370 KT022370 KT022372 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KT022372 KT022372 KT022373 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KT022373 KT022373 KT022374 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KT022374 KT022374 KT022375 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KT022375 KT022375 KT022376 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KT022376 KT022376 KT022377 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KT022377 KT022377 KT022378 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 KT022378 KT022378 KT022379 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 G G G KT022379 KT022379 KT022380 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 KT022380 KT022380 KT022381 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 KT022381 KT022381 KT022382 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 KT022382 KT022382 KT022383 LA abroad KE Kenya Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 KT022383 KT022383 KT152839 LA abroad IN India Southern Asia Asia Asia 2009 A1 A1 A1 KT152839 KT152839 KT152840 LA abroad IN India Southern Asia Asia Asia 1997 A1 A1 A1 KT152840 KT152840 KT152841 LA abroad IN India Southern Asia Asia Asia 1999 A1 A1 A1 KT152841 KT152841 KT152844 LA abroad IN India Southern Asia Asia Asia 1999 A1 A1 A1 KT152844 KT152844 KT152846 LA abroad IN India Southern Asia Asia Asia 2000 A1 A1 A1 KT152846 KT152846 KT183312 LA abroad ZA South Africa Southern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KT183312 KT183312 KT276261 LA abroad ES Spain Southern Europe Europe Europe 2014 G G G KT276261 KT276261 KU168256 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 2002 A1 A1 A1 KU168256 KU168256 KU168271 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 2003 D D D KU168271 KU168271 KU168272 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 2002 D D D KU168272 KU168272 KU168277 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 2003 G G G KU168277 KU168277 KU168278 LA 2003 G G G KU168278 KU168278 KU168300 LA abroad GW Guinea-Bissau Western Africa Sub-Saharan Africa Africa 2008 G G G KU168300 KU168300 KU168302 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2003 G G G KU168302 KU168302 KU168305 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2003 A1 A1 A1 KU168305 KU168305 KU685581 LA abroad ES Spain Southern Europe Europe Europe 2014 CRF_19 CRF_19 CRF_19 KU685581 KU685581 KU685582 LA abroad ES Spain Southern Europe Europe Europe 2014 CRF_19 CRF_19 CRF_19 KU685582 KU685582 KU685592 LA abroad ES Spain Southern Europe Europe Europe 2014 G G G KU685592 KU685592 KU749411 LA abroad PK Pakistan Southern Asia Asia Asia 2014 A1 A1 A1 KU749411 KU749411 KU749423 LA abroad RW Rwanda Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 KU749423 KU749423 KU749424 LA abroad RW Rwanda Eastern Africa Sub-Saharan Africa Africa 2008 A1 A1 A1 KU749424 KU749424 KX232594 LA abroad PK Pakistan Southern Asia Asia Asia 2014 A1 A1 A1 KX232594 KX232594 KX232595 LA abroad PK Pakistan Southern Asia Asia Asia 2014 A1 A1 A1 KX232595 KX232595 KX232597 LA abroad PK Pakistan Southern Asia Asia Asia 2014 A1 A1 A1 KX232597 KX232597 KX232600 LA abroad PK Pakistan Southern Asia Asia Asia 2014 A1 A1 A1 KX232600 KX232600 KX232607 LA abroad PK Pakistan Southern Asia Asia Asia 2014 A1 A1 A1 KX232607 KX232607 KX232609 LA abroad PK Pakistan Southern Asia Asia Asia 2014 A1 A1 A1 KX232609 KX232609 KX232610 LA abroad PK Pakistan Southern Asia Asia Asia 2014 A1 A1 A1 KX232610 KX232610 KX232611 LA abroad PK Pakistan Southern Asia Asia Asia 2014 A1 A1 A1 KX232611 KX232611 KX232613 LA abroad PK Pakistan Southern Asia Asia Asia 2014 A1 A1 A1 KX232613 KX232613 KX232614 LA abroad PK Pakistan Southern Asia Asia Asia 2015 A1 A1 A1 KX232614 KX232614 KX232618 LA abroad PK Pakistan Southern Asia Asia Asia 2015 A1 A1 A1 KX232618 KX232618 KX232620 LA abroad PK Pakistan Southern Asia Asia Asia 2015 A1 A1 A1 KX232620 KX232620 KX232624 LA abroad PK Pakistan Southern Asia Asia Asia 2015 A1 A1 A1 KX232624 KX232624 KX232626 LA abroad PK Pakistan Southern Asia Asia Asia 2015 A1 A1 A1 KX232626 KX232626 KX389615 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2010 G G G KX389615 KX389615 KX389618 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2010 G G G KX389618 KX389618 KX389619 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2010 G G G KX389619 KX389619 KX389620 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2010 G G G KX389620 KX389620 KX389625 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2009 G G G KX389625 KX389625 KX389626 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2009 G G G KX389626 KX389626 KX389628 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2009 G G G KX389628 KX389628 KX389631 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2009 G G G KX389631 KX389631 KX389635 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2009 G G G KX389635 KX389635 KX389636 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2009 G G G KX389636 KX389636 KX389641 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2011 G G G KX389641 KX389641 KX389642 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2011 G G G KX389642 KX389642 KX389645 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2011 G G G KX389645 KX389645 KX389646 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2012 G G G KX389646 KX389646 KX389648 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2012 G G G KX389648 KX389648 KX907336 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KX907336 KX907336 KX907341 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KX907341 KX907341 KX907343 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KX907343 KX907343 KX907346 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 KX907346 KX907346 KX907347 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KX907347 KX907347 KX907348 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2003 A1 A1 A1 KX907348 KX907348 KX907352 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2002 A1 A1 A1 KX907352 KX907352 KX907364 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KX907364 KX907364 KX907372 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KX907372 KX907372 KX907378 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 KX907378 KX907378 KX907383 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KX907383 KX907383 KX907389 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2004 A1 A1 A1 KX907389 KX907389 KX907401 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KX907401 KX907401 KX907406 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2004 D D D KX907406 KX907406 KX907412 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2005 A1 A1 A1 KX907412 KX907412 KX907414 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 KX907414 KX907414 KX907423 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 KX907423 KX907423 KX907431 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2006 A1 A1 A1 KX907431 KX907431 KY275364 LA abroad CN China Eastern Asia Asia Asia 2016 G G G KY275364 KY275364 KY392769 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 2002 D D D KY392769 KY392769 KY496622 LA abroad ES Spain Southern Europe Europe Europe 2015 A1 A1 A1 KY496622 KY496622 KY658694 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2008 A1 A1 A1 KY658694 KY658694 KY658695 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2008 A1 A1 A1 KY658695 KY658695 KY658696 LA abroad TZ United Republic of Tanzania Eastern Africa Sub-Saharan Africa Africa 2008 A1 A1 A1 KY658696 KY658696 KY658701 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2011 G G G KY658701 KY658701 KY953200 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2011 G G G KY953200 KY953200 KY953201 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2011 G G G KY953201 KY953201 KY953202 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 2011 G G G KY953202 KY953202 LH107 CU La Habana CU Cuba Cuba Cuba Cuba 17-Sep-2013 05-Jul-2013 M HT naive CRF_19 D CRF_19 CRF_19 D True MZ004178 LH124 CU La Habana CU Cuba Cuba Cuba Cuba 06-Oct-2013 21-May-2013 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004161 LH168 CU La Habana CU Cuba Cuba Cuba Cuba 25-Jun-2013 06-Nov-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004162 LH18 CU La Habana CU Cuba Cuba Cuba Cuba 09-May-2013 04-Sep-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004163 LH217 CU La Habana CU Cuba Cuba Cuba Cuba 07-Feb-2013 25-Jun-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004164 LH245 CU La Habana CU Cuba Cuba Cuba Cuba 24-Sep-2013 07-Sep-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004179 LH265 CU La Habana CU Cuba Cuba Cuba Cuba 17-Sep-2013 07-Sep-2013 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004165 LH266 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004166 LH31 CU La Habana CU Cuba Cuba Cuba Cuba 17-Sep-2013 04-Sep-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004167 LH316 CU La Habana CU Cuba Cuba Cuba Cuba 09-May-2013 16-Jul-2013 M HT naive CRF_19 D CRF_19 CRF_19 D True MZ004169 LH322 CU La Habana CU Cuba Cuba Cuba Cuba 05-Jun-2014 08-Jun-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004170 LH339 CU La Habana CU Cuba Cuba Cuba Cuba 29-Oct-2013 13-Aug-2013 M HT naive CRF_19 D CRF_19 CRF_19 D True MZ004180 LH353 CU La Habana CU Cuba Cuba Cuba Cuba 27-Aug-2013 13-Aug-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004181 LH39 CU La Habana CU Cuba Cuba Cuba Cuba 05-Jul-2013 16-Apr-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004168 LH396 CU La Habana CU Cuba Cuba Cuba Cuba 09-Mar-2013 09-Mar-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004171 LH409 CU La Habana CU Cuba Cuba Cuba Cuba 10-Jan-2013 09-Oct-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004172 LH41 CU La Habana CU Cuba Cuba Cuba Cuba 07-Sep-2013 16-Apr-2013 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004173 LH447 CU La Habana CU Cuba Cuba Cuba Cuba 21-Jan-2014 10-Jan-2013 M HT naive CRF_19 D CRF_19 CRF_19 D True MZ004174 LH64 CU La Habana CU Cuba Cuba Cuba Cuba 21-May-2013 23-Apr-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004176 LH742 CU La Habana CU Cuba Cuba Cuba Cuba 09-Feb-2014 21-Jan-2014 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004177 LT28 CU Las Tunas CU Cuba Cuba Cuba Cuba 12-Apr-2013 11-Dec-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004182 LT35 CU Las Tunas CU Cuba Cuba Cuba Cuba 29-Jan-2014 24-Dec-2013 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004183 M22639 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 1985 D D D M22639 M22639 M27323 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 1983 D D D M27323 M27323 M62320 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1985 A1 A1 A1 M62320 M62320 MF109427 LA abroad GB United Kingdom of Great Britain and Northern Ireland Northern Europe Europe Europe 2014 A1 A1 A1 MF109427 MF109427 MF109532 LA abroad GB United Kingdom of Great Britain and Northern Ireland Northern Europe Europe Europe 2014 D D D MF109532 MF109532 MF109568 LA abroad GB United Kingdom of Great Britain and Northern Ireland Northern Europe Europe Europe 2014 G G G MF109568 MF109568 MF109598 LA abroad GB United Kingdom of Great Britain and Northern Ireland Northern Europe Europe Europe 2014 G G G MF109598 MF109598 MF109613 LA abroad GB United Kingdom of Great Britain and Northern Ireland Northern Europe Europe Europe 2014 A1 A1 A1 MF109613 MF109613 MF109623 LA abroad GB United Kingdom of Great Britain and Northern Ireland Northern Europe Europe Europe 2014 A1 A1 A1 MF109623 MF109623 MF109647 LA abroad GB United Kingdom of Great Britain and Northern Ireland Northern Europe Europe Europe 2013 G G G MF109647 MF109647 MF109677 LA abroad GB United Kingdom of Great Britain and Northern Ireland Northern Europe Europe Europe 2013 A1 A1 A1 MF109677 MF109677 MF109689 LA abroad GB United Kingdom of Great Britain and Northern Ireland Northern Europe Europe Europe 2013 D D D MF109689 MF109689 MF109710 LA abroad GB United Kingdom of Great Britain and Northern Ireland Northern Europe Europe Europe 2013 D D D MF109710 MF109710 MF109713 LA abroad GB United Kingdom of Great Britain and Northern Ireland Northern Europe Europe Europe 2013 D D D MF109713 MF109713 MF157743 LA abroad ES Spain Southern Europe Europe Europe 2009 G G G MF157743 MF157743 MF373124 LA abroad SE Sweden Northern Europe Europe Europe 1993 A1 A1 A1 MF373124 MF373124 MF373167 LA abroad SE Sweden Northern Europe Europe Europe 2012 A1 A1 A1 MF373167 MF373167 MF373168 LA abroad SE Sweden Northern Europe Europe Europe 2012 A1 A1 A1 MF373168 MF373168 MF373180 LA abroad SE Sweden Northern Europe Europe Europe 2012 D D D MF373180 MF373180 MF373181 LA abroad SE Sweden Northern Europe Europe Europe 2013 A1 A1 A1 MF373181 MF373181 MF373182 LA abroad SE Sweden Northern Europe Europe Europe 2013 A1 A1 A1 MF373182 MF373182 MF614605 LA abroad RU Russian Federation Russia Russia Europe 1989 G G G MF614605 MF614605 MF614606 LA abroad RU Russian Federation Russia Russia Europe 2012 G G G MF614606 MF614606 MH431770 LA abroad CN China Eastern Asia Asia Asia 2013 G G G MH431770 MH431770 MH705134 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 1987 G G G MH705134 MH705134 MH705143 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1995 D D D MH705143 MH705143 MH705145 LA abroad CM Cameroon Middle Africa Sub-Saharan Africa Africa 2005 G G G MH705145 MH705145 MH705152 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 1987 D D D MH705152 MH705152 MH705155 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 1987 G G G MH705155 MH705155 MH705162 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 1987 G G G MH705162 MH705162 MT40 CU Matanzas CU Cuba Cuba Cuba Cuba 16-Oct-2013 10-Aug-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004184 MY10 CU Mayabeque CU Cuba Cuba Cuba Cuba 22-Jul-2013 25-Jun-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004175 PR-29 CU Pinar del Rio CU Cuba Cuba Cuba Cuba 18-Oct-2013 01-Oct-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004185 SC29 CU Santiago de Cuba CU Cuba Cuba Cuba Cuba 25-Sep-2013 05-Aug-2013 F HT naive CRF_19 D CRF_19 CRF_19 D True MZ004186 SC41 CU Santiago de Cuba CU Cuba Cuba Cuba Cuba 23-Oct-2013 07-Sep-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004187 SC70 CU Santiago de Cuba CU Cuba Cuba Cuba Cuba 14-Feb-2014 20-Aug-2013 M MSM naive CRF_19 D CRF_19 CRF_19 D True MZ004188 U88822 LA abroad CD Democratic Republic of the Congo Middle Africa Sub-Saharan Africa Africa 1984 D D D U88822 U88822 U88824 LA abroad UG Uganda Eastern Africa Sub-Saharan Africa Africa 1994 D D D U88824 U88824 U88826 LA abroad NG Nigeria Western Africa Sub-Saharan Africa Africa 1992 G G G U88826 U88826 cu-231-17 CU CU Cuba Cuba Cuba Cuba D D CRF_19 D True MZ004356