Result file of TCGA_PRAD_nonPRAD_process.R,,,,
#Probes = List of sites analyzed by limma,,,,
#FDR = FDR of the comparison between PRAD and other urinary samples,,,,
#PRAD.tumor.mean = average beta value of PRAD,,,,
#others.mean = average beta value of other urinary samples,,,,
#delta.beta = PRAD.tumor.mean - others.mean,,,,
,,,,
Probes,FDR,PRAD.tumor.mean,others.mean,delta.beta
cg00000029,9.86E-111,0.131233511,0.373398536,-0.242165025
cg00000165,1.47E-19,0.425489706,0.300586825,0.124902881
cg00000236,1.41E-17,0.882072976,0.895061015,-0.012988039
cg00000289,0.000130434,0.673025017,0.690803768,-0.017778752
cg00000292,8.72E-07,0.652336283,0.594553911,0.057782372
cg00000363,1.28E-09,0.202457439,0.229752068,-0.027294628
cg00000714,2.72E-103,0.091571541,0.146798078,-0.055226537
cg00000721,1.32E-34,0.918473604,0.935471859,-0.016998255
cg00000734,2.55E-06,0.05490916,0.057891772,-0.002982611
cg00000769,6.82E-11,0.025944475,0.023679912,0.002264563
cg00000905,1.14E-06,0.059380287,0.063968148,-0.004587862
cg00000948,1.40E-08,0.881415434,0.89627831,-0.014862876
cg00001349,0.764492656,0.849665301,0.846946296,0.002719005
cg00001364,3.93E-10,0.851038176,0.881166586,-0.03012841
cg00001446,2.94E-07,0.850098315,0.804079951,0.046018364
cg00001582,5.74E-05,0.044309823,0.046301197,-0.001991374
cg00001583,1.10E-119,0.426884468,0.155130114,0.271754354
cg00001747,8.51E-44,0.241106543,0.138530808,0.102575735
cg00001791,1.98E-34,0.929427578,0.899227412,0.030200166
cg00001854,6.73E-41,0.936771306,0.885884172,0.050887134
cg00001874,1.63E-46,0.384810399,0.540168131,-0.155357732
cg00002033,2.59E-102,0.605639131,0.387810069,0.217829062
cg00002224,3.36E-40,0.137707081,0.199487785,-0.061780704
cg00002236,0.049528743,0.034691564,0.035457844,-0.00076628
cg00002406,0.006144173,0.023193868,0.02400916,-0.000815292
cg00002449,3.24E-29,0.869864927,0.818089978,0.051774948
cg00002464,9.24E-21,0.040636682,0.050268785,-0.009632103
cg00002490,0.054079102,0.028476712,0.029807758,-0.001331047
cg00002591,1.06E-35,0.891799807,0.905822914,-0.014023108
cg00002593,7.66E-188,0.426875214,0.762203624,-0.33532841
cg00002597,0.421121419,0.832177248,0.822283848,0.0098934
cg00002646,1.51E-33,0.811732506,0.867709853,-0.055977346
cg00002660,7.21E-26,0.089518684,0.050732632,0.038786052
cg00002719,2.36E-178,0.486831652,0.129348475,0.357483178
cg00002769,0.340127826,0.903829943,0.893021668,0.010808274
cg00002808,6.73E-13,0.932170295,0.914625781,0.017544514
cg00002810,0.146967061,0.12525349,0.130928161,-0.005674671
cg00002837,1.26E-24,0.500964882,0.381449817,0.119515065
cg00003091,0.003308572,0.043285146,0.046193446,-0.0029083
cg00003173,0.310317121,0.04131022,0.041230026,8.02E-05
cg00003181,1.35E-63,0.881976201,0.764584168,0.117392033
cg00003202,0.000121528,0.009672086,0.009558634,0.000113452
cg00003287,3.42E-106,0.314701368,0.15898056,0.155720808
cg00003298,0.079216547,0.10743129,0.167469849,-0.06003856
cg00003305,5.82E-59,0.478851824,0.315323181,0.163528642
cg00003345,8.04E-113,0.307201159,0.480067261,-0.172866102
cg00003513,7.98E-77,0.748001496,0.860174041,-0.112172545
cg00003529,9.98E-128,0.517934583,0.779345684,-0.261411101
cg00003578,4.11E-45,0.627206715,0.525030722,0.102175992
cg00003625,1.03E-132,0.620799047,0.354672666,0.266126381
cg00003784,0.029282018,0.027646624,0.028412258,-0.000765634
cg00003994,9.37E-49,0.252040686,0.146985266,0.10505542
cg00004061,3.94E-45,0.455581019,0.592832612,-0.137251593
cg00004072,0.035844894,0.03716013,0.038043073,-0.000882942
cg00004089,0.205205474,0.843525247,0.834085986,0.009439261
cg00004207,4.37E-47,0.057400814,0.075311737,-0.017910923
cg00004257,1.42E-68,0.415666865,0.237505453,0.178161412
cg00004421,1.54E-21,0.452072929,0.539560912,-0.087487982
cg00004429,0.000495881,0.877933938,0.882071299,-0.004137362
cg00004533,0.669588706,0.935520653,0.933935891,0.001584762
cg00004608,9.32E-07,0.452867218,0.41396801,0.038899209
cg00004773,1.54E-53,0.911333855,0.792572827,0.118761028
cg00004939,0.108641702,0.062814196,0.059452581,0.003361615
cg00004963,0.320153679,0.798424695,0.787054208,0.011370487
cg00004996,0.000524993,0.81739185,0.782885122,0.034506728
cg00005040,5.77E-63,0.215669823,0.123753849,0.091915974
cg00005072,3.69E-24,0.843239841,0.815651071,0.02758877
cg00005112,8.65E-17,0.704369079,0.621297941,0.083071138
cg00005166,3.76E-15,0.503534665,0.598755038,-0.095220373
cg00005215,6.78E-217,0.472129256,0.812086444,-0.339957187
cg00005297,0.034465489,0.209735285,0.204744824,0.004990461
cg00005306,2.06E-08,0.012120269,0.011497948,0.000622322
cg00005543,3.87E-05,0.017603398,0.017077823,0.000525575
cg00005619,1.75E-35,0.887411179,0.812110605,0.075300574
cg00005740,1.24E-228,0.901334154,0.460088866,0.441245288
cg00005817,0.025488824,0.827716724,0.83705284,-0.009336116
cg00005847,1.83E-27,0.604213799,0.713003372,-0.108789573
cg00005849,1.16E-15,0.831428521,0.790456402,0.040972119
cg00006032,4.90E-05,0.072562373,0.07911924,-0.006556868
cg00006081,5.79E-34,0.467453434,0.360315918,0.107137516
cg00006122,5.10E-12,0.050946259,0.054627421,-0.003681162
cg00006198,0.002384817,0.821818229,0.794012148,0.027806081
cg00006243,0.8520202,0.083357943,0.080392638,0.002965305
cg00006397,3.35E-06,0.480499868,0.529995092,-0.049495225
cg00006459,1.54E-73,0.866694263,0.647276256,0.219418007
cg00006626,8.05E-44,0.739866092,0.811444399,-0.071578306
cg00006787,6.79E-133,0.869031678,0.67422578,0.194805898
cg00006884,1.90E-07,0.037309724,0.039851913,-0.002542189
cg00006948,0.002618962,0.034759965,0.029046134,0.005713831
cg00007032,0.867319441,0.073027635,0.063734445,0.009293191
cg00007076,6.01E-12,0.187765887,0.242074442,-0.054308555
cg00007221,1.36E-112,0.306665811,0.572395753,-0.265729941
cg00007226,0.00035289,0.055564421,0.057580378,-0.002015957
cg00007239,0.215027116,0.839215498,0.824950879,0.014264619
cg00007269,6.19E-08,0.048576155,0.054353122,-0.005776967
cg00007300,0.024675103,0.0224831,0.021352197,0.001130903
cg00007420,1.34E-22,0.268567982,0.346996961,-0.078428979
cg00007426,1.57E-09,0.813192452,0.73815586,0.075036592
cg00007466,4.92E-36,0.902075097,0.921844948,-0.019769851
cg00007644,2.48E-33,0.243375103,0.178702856,0.064672247
cg00007675,3.37E-88,0.686544773,0.829227404,-0.142682632
cg00007898,5.07E-10,0.018685744,0.017715656,0.000970088
cg00007981,0.246424323,0.023289915,0.023507549,-0.000217634
cg00008004,5.05E-05,0.067832478,0.065453622,0.002378856
cg00008036,1.39E-43,0.285889365,0.190440698,0.095448667
cg00008188,0.436663809,0.037183476,0.036736133,0.000447342
cg00008345,0.001680749,0.936576411,0.938988752,-0.002412341
cg00008387,1.29E-19,0.070332891,0.076408824,-0.006075934
cg00008446,8.23E-73,0.451485166,0.324718698,0.126766468
cg00008452,0.001643448,0.906692957,0.911227665,-0.004534707
cg00008488,2.00E-214,0.296535283,0.077856073,0.21867921
cg00008564,2.93E-121,0.559961839,0.774387384,-0.214425545
cg00008629,2.53E-140,0.767936524,0.440949763,0.326986761
cg00008647,2.21E-27,0.042298929,0.074629075,-0.032330146
cg00008665,4.47E-56,0.678684428,0.530295892,0.148388536
cg00008671,8.65E-282,0.869081966,0.532550598,0.336531369
cg00008695,1.58E-164,0.93830737,0.710633327,0.227674043
cg00008713,7.19E-06,0.052174442,0.054601424,-0.002426982
cg00008737,0.294518045,0.904672066,0.898405595,0.006266471
cg00008810,1.03E-05,0.931275998,0.920332457,0.010943541
cg00008839,7.99E-05,0.011823546,0.011775841,4.77E-05
cg00008971,3.67E-27,0.796518759,0.708372537,0.088146222
cg00009053,8.40E-81,0.864405565,0.757370592,0.107034973
cg00009214,3.00E-05,0.03100925,0.029259841,0.001749409
cg00009292,1.50E-21,0.278671439,0.196945388,0.08172605
cg00009293,0.101454699,0.781579449,0.75934087,0.022238579
cg00009364,0.973116627,0.015620145,0.019053832,-0.003433688
cg00009407,0.331035799,0.031727788,0.031378654,0.000349133
cg00009412,0.021882517,0.026707676,0.027365675,-0.000657999
cg00009421,0.504453747,0.783651509,0.780979305,0.002672204
cg00009553,3.38E-36,0.558018,0.704662705,-0.146644706
cg00009750,5.38E-32,0.866502662,0.72350574,0.142996922
cg00009871,8.04E-09,0.788390194,0.740139947,0.048250247
cg00009944,2.85E-11,0.76289172,0.788628095,-0.025736375
cg00009970,2.87E-05,0.020367323,0.019691508,0.000675816
cg00010046,4.65E-05,0.035748685,0.037570801,-0.001822116
cg00010078,5.34E-29,0.547657991,0.646708382,-0.099050391
cg00010108,3.33E-07,0.881993824,0.866313468,0.015680356
cg00010168,4.79E-06,0.077645646,0.082076484,-0.004430838
cg00010266,0.014346248,0.036866012,0.038281314,-0.001415302
cg00010445,0.233093092,0.439370361,0.450533373,-0.011163012
cg00010654,3.01E-104,0.104542048,0.212178658,-0.10763661
cg00010659,3.26E-05,0.043633851,0.045983238,-0.002349387
cg00010742,0.408913329,0.297380583,0.311689557,-0.014308974
cg00010890,0.319626932,0.910039959,0.908586724,0.001453235
cg00010946,0.257608953,0.550495209,0.557850728,-0.00735552
cg00010947,0.000600594,0.041205147,0.04347454,-0.002269393
cg00010992,0.072086926,0.043144995,0.045013358,-0.001868364
cg00011122,0.057656176,0.053549459,0.055219513,-0.001670054
cg00011203,0.000592115,0.194630697,0.183851634,0.010779063
cg00011225,1.43E-137,0.38633316,0.162665025,0.223668135
cg00011239,6.36E-257,0.859912598,0.5252341,0.334678498
cg00011247,0.000828243,0.013219268,0.012863279,0.000355989
cg00011460,1.47E-05,0.954407629,0.947021266,0.007386363
cg00011482,3.19E-105,0.531469533,0.330746471,0.200723062
cg00011564,0.159540148,0.92028854,0.921088709,-0.000800169
cg00011578,2.87E-09,0.081988357,0.087312735,-0.005324377
cg00011605,5.54E-51,0.936554258,0.853836408,0.08271785
cg00011616,7.22E-133,0.645942157,0.311827716,0.334114441
cg00011717,0.000279804,0.98008385,0.97157814,0.00850571
cg00011740,7.24E-21,0.165743402,0.109927676,0.055815726
cg00011856,3.13E-10,0.651758885,0.593564916,0.058193969
cg00012036,0.882902269,0.063588603,0.063510213,7.84E-05
cg00012126,0.072842684,0.042385037,0.043295597,-0.000910559
cg00012148,2.91E-21,0.687510535,0.573885766,0.113624769
cg00012199,0.698703748,0.041303917,0.040291149,0.001012767
cg00012203,0.475832144,0.015307171,0.015497594,-0.000190423
cg00012238,5.14E-34,0.388813562,0.288753517,0.100060045
cg00012386,1.04E-11,0.037344616,0.041422975,-0.004078359
cg00012469,1.98E-08,0.093770909,0.102099683,-0.008328773
cg00012529,5.57E-13,0.8187985,0.849197848,-0.030399348
cg00012638,3.29E-40,0.611883042,0.484061958,0.127821084
cg00012698,4.29E-173,0.211299311,0.659629027,-0.448329716
cg00012792,5.11E-18,0.063070776,0.069093334,-0.006022557
cg00012920,0.000707861,0.928272542,0.911612361,0.016660181
cg00012992,0.004619633,0.021229154,0.028946831,-0.007717677
cg00013006,1.33E-15,0.913418851,0.853830681,0.05958817
cg00013015,1.36E-06,0.723629875,0.671896957,0.051732918
cg00013374,8.20E-81,0.709008263,0.837272172,-0.128263909
cg00013409,1.96E-41,0.146544191,0.096786756,0.049757436
cg00013410,2.95E-18,0.030332321,0.02757707,0.002755252
cg00013441,0.428750356,0.117712287,0.123739719,-0.006027433
cg00013451,1.73E-159,0.354463634,0.134244575,0.220219058
cg00013475,3.97E-12,0.097391015,0.062405162,0.034985853
cg00013569,6.97E-10,0.979113,0.980613463,-0.001500464
cg00013618,4.50E-17,0.893236485,0.837880677,0.055355809
cg00013660,3.34E-06,0.56741781,0.604968877,-0.037551067
cg00013733,3.47E-07,0.936757393,0.924129881,0.012627511
cg00013804,7.26E-66,0.906901459,0.757024054,0.149877405
cg00014085,4.10E-06,0.034950591,0.038645899,-0.003695308
cg00014104,7.71E-59,0.245996669,0.409302036,-0.163305367
cg00014118,2.65E-76,0.635180732,0.476266449,0.158914283
cg00014194,5.89E-18,0.256500418,0.331445717,-0.0749453
cg00014203,2.05E-05,0.718315041,0.736172615,-0.017857573
cg00014260,0.036508263,0.613101352,0.590445052,0.022656299
cg00014272,0.047711831,0.031602059,0.032585976,-0.000983917
cg00014285,4.41E-11,0.03942212,0.032289823,0.007132297
cg00014289,8.88E-58,0.260742818,0.168546794,0.092196023
cg00014301,0.07418586,0.92964152,0.93060729,-0.00096577
cg00014333,7.29E-15,0.580184698,0.647760214,-0.067575516
cg00014445,0.017523178,0.917405496,0.904884644,0.012520852
cg00014667,3.36E-24,0.824050858,0.793522743,0.030528115
cg00014733,1.37E-33,0.904741532,0.925112865,-0.020371333
cg00014752,0.002638048,0.041268337,0.042331851,-0.001063514
cg00014830,1.49E-117,0.655529782,0.373714621,0.281815161
cg00014996,2.95E-15,0.021918139,0.02042293,0.001495209
cg00014998,1.53E-113,0.89281452,0.701002159,0.191812362
cg00015024,6.82E-21,0.076930916,0.10418071,-0.027249794
cg00015058,1.05E-15,0.115341703,0.072426436,0.042915267
cg00015319,1.99E-06,0.493075338,0.464981011,0.028094327
cg00015340,1.47E-55,0.879183429,0.751213792,0.127969637
cg00015343,0.001486554,0.734375269,0.75136576,-0.016990491
cg00015373,0.000196063,0.918826554,0.909648765,0.009177789
cg00015603,2.90E-25,0.869947179,0.888090766,-0.018143587
cg00015639,2.53E-25,0.875316978,0.84482487,0.030492108
cg00015699,6.57E-20,0.797222344,0.856756399,-0.059534055
cg00015770,3.83E-64,0.334556881,0.192322836,0.142234045
cg00016127,0.327411175,0.868899647,0.850685907,0.018213741
cg00016156,0.498616995,0.029948236,0.030159292,-0.000211056
cg00016255,1.02E-223,0.091206933,0.274839039,-0.183632106
cg00016360,3.42E-10,0.919959924,0.861912904,0.058047019
cg00016498,0.019584339,0.023498436,0.024122963,-0.000624527
cg00016593,2.08E-07,0.865419375,0.872886318,-0.007466942
cg00016618,5.78E-32,0.932618729,0.945595274,-0.012976545
cg00016718,3.80E-13,0.858792135,0.888400995,-0.029608861
cg00016783,0.780012054,0.911110455,0.90951411,0.001596345
cg00016814,0.000214245,0.819823023,0.793992262,0.025830761
cg00016841,4.19E-36,0.06416088,0.092285425,-0.028124545
cg00016892,2.41E-39,0.71256053,0.624899377,0.087661153
cg00016968,2.17E-146,0.295992593,0.476258451,-0.180265858
cg00017002,0.008621447,0.028292243,0.033734954,-0.005442711
cg00017062,0,0.617269708,0.155278233,0.461991475
cg00017121,2.65E-06,0.870732629,0.877995271,-0.007262642
cg00017188,8.70E-06,0.029274044,0.027918824,0.00135522
cg00017203,3.62E-43,0.860431624,0.887539164,-0.02710754
cg00017441,4.11E-08,0.012532504,0.012002509,0.000529995
cg00017461,3.80E-130,0.838506596,0.601954996,0.236551601
cg00017475,0.182456762,0.919866972,0.921218571,-0.001351598
cg00017489,6.94E-17,0.496863289,0.398064001,0.098799288
cg00017601,6.53E-20,0.778010516,0.764028461,0.013982055
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