#NEXUS

BEGIN DATA;
DIMENSIONS NTAX=7 NCHAR=3596;  
FORMAT MISSING=n gap=- DATATYPE=DNA  RESPECTCASE INTERLEAVE  ;



;


MATRIX

[ITS2-LSU-cp23S-Cob-cox1]

Cladocopium_pacificum_Pal09_471					TTGTCTGACTTCATGCTAGAGGCATGCACCTGCATCCCAGCGGTTGCAAGCATGAGCAGCGTCACTCAAGTAAAACCACGAAGGTAGAAACCTGAATAACCGCGCGCAAAGCATTTTGCAAGAACCAAGCAATTCACAAGCCATTGGCTCAGAGGG-nnnCAATAGCTCATAAGAAC-nnGCAA-GGCAGAAAC-ACATCCTGCTTGCAAAGTTGGGGCAAGTTAAGCACTGAAGCAGACATACTCTCAGGAAATCCCAAGAGTGCAACGCACGTTCAGGAGGCCATTGATTRRR-GGGGAAAAGGAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATTAGCTCAGGCTGGAAACTGAAGCTTnnCGGTTTCGGGATGTAGCCTGCAGGCnATAnGTGCTATCGGCGGTTCGAGCGTAAGCCTCTTGGAATAGAnGCGTGTGCCCGGGTGAGAATCCTGTGTTTCGCTTGATGnTCCGCTGTCCnACAGCACTTGTTCTCAGAGTCACGCTCCTYGGAATTnGGAGCGTAAATAAGGTnGGTAAATTTCATCTAAAGCTAAATACAGGCTCnGAGACCGATAGTGAACAAGTACCATnGAGGGAAAGATGAAAAGGACTTTGGAAAGAGAGTTAAAnGGTGCTTnGAAATCGCTnnGAAAGGGAAGCGAAGAGAGnCCnnACATGTnnCTTGCTGAGnATTGCTGTAGGCTGCTGTGAGnnnnnnCCTTGGnnGCACATCAGnCGCAAGCTGTGTGCTTAAnGCGTGAATAnnnnGTTGTnCTGCTGTGTTTCTTAGCTTGCGTGTCACTTGCCnnACACCTGTTTGAGGATGGCCTTCAGCTCGCAGnGnGCACACTnTGCnGGATGCGTCTCTGGGCTGTTAGGGATTCAGACAAGCnGTGGCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTTGACTCATTGGTTTTTTTCGACCTGRRR-TTTACGGGATGAGCACTCCCACCAATAATTAAGCTACCTATTTTAGTGATGATAAGCCGACATCGAGGTACATTTTTCGTGATAATGTGACCTTTAATATTGCGGAAATTAAGCCTGTTATCCGTAGAGTAGCTTAACTCGGGTAAATTAATTTAAAGCTCATTAAGATAGCATTTAAGTACTGGGAAGGACTTGTTGGGCCATTAAGCGAAACATGTATCTTTGCACTTATTAGTTGGTCA-AAAGTTTAGGATCCTTGTATCGCTTTGTTCACCTTAGGTGGCTGTTGATAAGGTTATCGCCCCAATTAAACAGTGGTCTTAGGAGAAAA-nnnnnnCCAATAATTTACTACTTTAGCTGGCATGCAATAAGAATATTTGTATTGAGAATGTTACCCAAGTTTTATCCCTATAAAGCTTCAGAGGGTCTTTTTGTCCTTTAGTGTTAAT-nnnnnnnnAAACTTTAGTCAGCATATTATTCGTACTGATGAATATTTTACCATGATGTGTGTGCAAGACAGCTATCGAATCGTTCTATGTTTCATGCAGGTCGTTATTAGGACGACAAGGAAATTTGCTACCTTAGGACRRR-AATTATTTTTGGAATCTTGGTTTTTTATTAGGGATTACTATTTTATTACAAATTATATCTGGAATCTTCTTAGGTTTACATTATACATCAGATATTAATTCAGCATATTTTAGTATTTTCTTTATTATTAGAGAAATATATTATGGATGGTGTTTACGTTATCTTCATTCTAATGGTTCATCATTTGTCTTTCTTTTGATATTTCTACATCTTGGAAGAGCTATATCTTATGGTTCATATTTTTATAATCCAAATACTTGGTTTTCTGGAATTATTATTATCTTCTTCTTAATGGGAACAGCATTTATGGGTTATGTGTTACCTTTAGGACAAATGAGTTTATGGGGAGTTACAGTAATTACAAATTTATTATCTGCATTTCCATCTTTAATAGAATGGCTTTGTGGAGGACATTACATTTACAATCCTACATTTAAGAGGTTCTTTGTCTTTCATTTTCTATTTCCATTTCTTCTTTGTGGTTTTCTTCTTTATCATATTTTTAATCTACATTTTCTATCTTCTAATAATCCTTTAAGGAATTCCACTAATAATAAAATAGCATTTTTCCCTTTCATTATTAGTAAAGATTTATATGGAAAGATATTAATTCTCTATCTATATCTTCTTCAAATTCATTTCGGTTTCTCTTCTTTCTCACATCCAGATAATGCATTAGAAGCATGTGGATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCTTATGCCAATATGCTATGTTAAAAGCTGTACCAAATAAAAATGCAGGATTCATTATATTATTTACTTCTATCTTCATCTTATTTTACTTTATGAGAAGTCTTTCAATCTCATTCTATTTTATAATATTTTTCACCAATAGATTTAATGGTTTTTATCTGTGCTTTTGGTTTCTTCTTCTTTTTTCRRR-TATTATTTATTATCTGGATTCATCTTTGGAATCTCCGGTACATTAATATCAGTCCTTATAAGAATAGAATTATATTCTTCAGGAAATAGGATTATATCTCCAGAAAACCAGAACTTCTATAATATAAGCATTACATTGCATGGCTTTCTTATGATTTTCTTTTTAGTAATGCCTGGCTTGTTTGGAGGATTTGGAAATTATTTTGTACCTATCTTTCAAGGGTCTCCAGAAGTGGTATATCCTAGAGTCAATAATTTTTCTATCTTAATTCTTTTGCTTTCATATCTTTTCCTAATCCTTTCTTTAATCTCAGAATTTGGAGGTGGTACAGGGTGGACGCTCTACCCACCATTATCCACTTCTTTTATGACTTTATCACCTTCAAGTACAGGAAATCTTATATTTGGATTAATAATCTCTGGTATATCTTCATGTCTTACATCTCTTAACTTTTGGACAACAATTCATTTTCTGAGATCTTATTATCTGATATTATCTTCTATCCCATTATTTCCTTGGGCTTTCTTGATTACAGCTTTCATGCTTTTATTAACATTACCAATTTTATCTGGTACACTTCTTTTAATATTGGGTGATCTTCATTCTAATACACTTTTCTTTGATCCAATATTTGGAGGAGATCCTATATTCTATCAACATTTATTTTGGTTTTTTGGACATCCAGAAGTTTACATATTAATAATTCCTGCATTTGGGATCATTTCCATAATAATTTCTGGTATTTTACAGTTAATAATCTTTGCTAACCAATCAATGATCTTTGCCATGTCATCTATTTCTCTTCTTGGAGGTCTTGTTTGGGGACATCATATGTATACTGTAGGTTTAGAAAGTGATACAAGAGCTTATTTTACAGGAGTTACAATATTAATATCCTTACCAACTGGTACAAAAATCTTTAATTGGCTTTTTACATATCTCTCAAATCCACCATTATTACACCTTAGAATTACTTCTGTCTTCCTCTCACATCTCTTTTTAT
Cladocopium_latusorum_Pal09_620   				TTGTCTGACTTCATGCTAGAGGCATGCACCTGCATCCCAGCGGTTGCAAGCATGAGCAGCGTCACTCAAGTAAAACCACGAAGGTAGAAACCTGAATAACAGCGCGCAAAGCATTTTGCAAGAACCAAGCAATTCACAAGCCATTGGCTCAGAGGG-nnnCAATAGCTCATAAGAAC-nnGCAA-GGCAGAAAC-ACATCCTGCTTGCAAAGTTGGGGCAAGTTAAGCACTGAAGCAGACATACTCTCAGGAAATCCCAAGAGTGCAACGCACGTTCAGGAGGCCATTGATTRRR-GGGGAAAAGGAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATTAGCTCAGGCTGGAAACTGAAGCTTnnCGGTTTCGGGATGTAGCCTGCAGGCnATAnGTGCTATCGGCGGTTCGGGCGTAAGCCTCTTGGAATAGAnGCGTGTGCCCGGGTGAGAATCCTGTGTTTCGCTCGATGnTCCGCTGTCCnACAGCACTTGTTCTCAGAGTCACGCTCCTCGGAATTnGGAGCGTAAATAAGGTnGGTAAATTTCATCTAAAGCTAAATACAGGCTCnGAGACCGATAGTGAACAAGTACCATnGAGGGAAAGATGAAAAGGACTTTGGAAAGAGAGTTAAAnGGTGCTTnGAAATCGCTnnGAAAGGGAAGCGAAGAGAGnCCnnACATGTnnCTTGCTGAGnATTGCTGTAGGCTGCTGTGAGnnnnnnCCTTGGnnGCACATCAGnCGCAAGCTGTGTGCTTAAnGCGTGAATAnnnnGTTGTnCTGCTGTGTTTCTTAGCTTGCGTGTCACTTGCCnnACACCTGTTTGAGGATGGCCTTCAGCTCGCAGnGnGCACACTnTGCnGGATGTGTCTCTGGGCCGTTAGGGATTCAGACAAGCnGTGGCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTTGACTCATTGGTTTTTTTCGACCTGRRR-TTTACGGGATGAGCACTCCCACCAATAATTAAGCTACCTATTTTAGTGATGATAAGCCGACATCGAGGTACATTTTTCGTGATAATGTGACCTTTAATATTGCGGAAATTAAGCCTGTTATCCGTAGAGTAGCTTAACTCGGGTAAATTAATTTAAAGCTCATTAAGATAGCATTTAAGTACTGGGAAGGACTTGTTGGGCCATTAAGCGAAACATGTATCTTTGCACTTATTAGTTGGTCA-AAAGTTTAGGATCCTTGTATCGCTTTGTTCACCTTAGGTGGCTGTTGATAAGGTTATCGCCCCAATTAAACAGTGGTCTTAGGAGAAAA-nnnnnnCCAATAATTTACTACTTTAGCTGGCATGCAATAAGAATATTTGTATTGAGAATGTTACCCAAGTTTTATCCCTATAAAGCTTCAGAGGGTCTTTTTGTCCTTTAGTGTTAAT-nnnnnnnnAAACTTTAGTCAGCATATTATTCGTACTGATGAATATTTTACCATGATGTGTGTGCAAGACAGCTATCGAATCGTTCTATGTTTCATGCAGGTCGTTATTAGGACGACAAGGAAATTTGCTACCTTAGGACRRR-AATTATTTTTGGAATCTTGGTTTTTTATTAGGGATTACTATTTTATTACAAATTATATCTGGAATCTTCTTAGGTTTACATTATACATCAGATATTAATTCAGCATATTTTAGTATTTTCTTTATTATTAGAGAAATATATTATGGATGGTGTTTACGTTATCTTCATTCTAATGGTTCATCATTTGTCTTTCTTTTGATATTTCTACATCTTGGAAGAGCTATATCTTATGGTTCATATTTTTATAATCCAAATACTTGGTTTTCTGGAATTATTATTATCTTCTTCTTAATGGGAACAGCATTTATGGGTTATGTGTTACCTTTAGGACAAATGAGTTTATGGGGAGTTACAGTAATTACAAATTTATTATCTGCATTTCCATCTTTAATAGAATGGCTTTGTGGAGGACATTACATTTACAATCCTACATTTAAGAGGTTCTTTGTCTTTCATTTTCTATTTCCATTTCTTCTTTGTGGTTTTCTTCTTTATCATATTTTTAATCTACATTTTCTATCTTCTAATAATCCTTTAAGGAATTCCACTAATAATAAAATAGCATTTTTCCCTTTCATTATTAGTAAAGATTTATATGGAAAGATATTAATTCTCTATCTATATCTTCTTCAAATTCATTTCGGTTTCTCTTCTTTCTCACATCCAGATAATGCATTAGAAGCATGTGGATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCTTATGCCAATATGCTATGTTAAAAGCTGTACCAAATAAAAATGCAGGATTCATTATATTATTTACTTCTATCTTCATCTTATTTTACTTTATGAGAAGTCTTTCAATCTCATTCTATTTTATAATATTTTTCACCAATAGATTTAATGGTTTTTATCTGTGCTTTTGGTTTCTTCTTCTTTTTTCRRR-TATTATTTATTATCTGGATTCATCTTTGGAATCTCCGGTACATTAATATCAGTCCTTATAAGAATAGAATTATATTCTTCAGGAAATAGGATTATATCTCCAGAAAACCAGAACTTCTATAATATAAGCATTACATTGCATGGCTTTCTTATGATTTTCTTTTTAGTAATGCCTGGCTTGTTTGGAGGATTTGGAAATTATTTTGTACCTATCTTTCAAGGGTCTCCAGAAGTGGTATATCCTAGAGTCAATAATTTTTCTATCTTAATTCTTTTGCTTTCATATCTTTTCCTAATCCTTTCTTTAATCTCAGAATTTGGAGGTGGTACAGGGTGGACGCTCTACCCACCATTATCCACTTCTTTTATGACTTTATCACCTTCAAGTACAGGAAATCTTATATTTGGATTAATAATCTCTGGTATATCTTCATGTCTTACATCTCTTAACTTTTGGACAACAATTCATTTTCTGAGATCTTATTATCTGATATTATCTTCTATCCCATTATTTCCTTGGGCTTTCTTGATTACAGCTTTCATGCTTTTATTAACATTACCAATTTTATCTGGTACACTTCTTTTAATATTGGGTGATCTTCATTCTAATACACTTTTCTTTGATCCAATATTTGGAGGAGATCCTATATTCTATCAACATTTATTTTGGTTTTTTGGACATCCAGAAGTTTACATATTAATAATTCCTGCATTTGGGATCATTTCCATAATAATTTCTGGTATTTTACAGTTAATAATCTTTGCTAACCAATCAATGATCTTTGCCATGTCATCTATTTCTCTTCTTGGAGGTCTTGTTTGGGGACATCATATGTATACTGTAGGTTTAGAAAGTGATACAAGAGCTTATTTTACAGGAGTTACAATATTAATATCCTTACCAACTGGTACAAAAATCTTTAATTGGCTTTTTACATATCTCTCAAATCCACCATTATTACACCTTAGAATTACTTCTGTCTTCCTCTCACATCTCTTTTTAT
Cladocopium_thermophilum_AGJA11_08				TTGTCTGACTTCATGCTAGAGGCATGCACCTGCATCCCAGCGGTTGCAAGCATGAGCAGCGTCACTCAAGTAAAACCACGAAGGTAGAAACTTGAATAACAGCGCGCAAAGCATTTTGCAAGAACCAAGCAATTAACAAGCCATTGGCTCAGAGGG-nnnCAATAGCTCATAAGAAC-nnGCAA-GGCAGAAAC-ACATCCTGCTTGCAAAGTTGGGGCAAGTTAAGCACTGAAGCAGACATACTCTCAGGAAATCCCAAGAGTGCAACGCACGTTCAGGAGGCCATTGGTTRRR-GGGGAAAAGGAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATTAGCTCAGGCTGGAAACTGAAGCTTnnCGGTTTCGGGATGTAGCCTGCAGGCnATAnGGGCTATCGGCGGCTCGAGCGTAAGCCTCTTGGAATAGAnGCGTGTGCCCGGGTGAGAATCCTGTGTTTCGCTTGATGnTCCGCTGTCCnACAGCACTTGTTCTCAGAGTCACGCTCCTCGGAATTnGGAGCGTAAATAAGGTnGGTAAATTTCATCTAAAGCTAAATACGGGCTCnGAGACCGATAGYGAACAAGTACCATnGAGGGAAAGATGAAAAGGACTTTGGAAAGAGAGTTAAAnAGTGCTTnGAAATCGCTnnGAAAGGGAAGCGAAGAGAAnCCnnACACGTnnCTTGCTGAGnATTGCTGTAGGCTGCTGTGAGnnnnnnCCTTGGnnGCACATCAGnCGCAAGCTGTGTGCTTAAnGCGTGAATAnnnnGTTGTnCTGCTGTGTTTCTTAGCTTGCGCGTCACTTGCCnnACACCTGTTTGAGGATGGCCTTCAGCTCGCAGnGnGCACATTnTGCnGGATGCGTCTCTGGGCTGTTAGGGATTCAGACAAGCnGTGGCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTTGACTCATTGGTTTTTTTCGACCCGRRR-nnnnnnnnnnGAGCACTCCCACCAATAATTAAGCTACCTATTTTAGTGATGATAAGCCGACATCGAGGTACATTTTTCGTGATAATGTGACCTTTAATATTGCGGAAATTAAGCCTGTTATCCGTAGAGTAGCTTAACTCGGGTAAATTAATTTAAAGCTCATTAAGATAGCATTTAAGTACTGGGAAGGACTTGTTGGGCCATTAAGCGAAACATGTATCTTTGCACTTATTAGTTGGTCA-AAAGTTTAGGATCCTTGTATCGCTTTGTTCACCTTAGGTGGCTGTTGATAAGGTTATCGCCCCAATTAAACAGTGGTCTTAGGAGAAAA-nnnnnnCCAATAATTTACTACTTTAGCTGGCATGCAATAAGAATATTTGTATTGAGAATGTTACCCAAGTTTTATCCCTATAAAGCTTCAGAGGGTCTTTTTGTCCTTTAGTGTTAAT-nnnnnnnnAAACTTTAGTCAGCATATTATTCGTACTGATGAATATTTTACCATGATGTGTGTGCAAGACAGCTATCGAATCGTTCTATGTTTCATGCAGGTCGTTATTAGGACGACAAGGAAATTTGCTACCTTAGGACRRR-AATTATTTTTGGAATCTTGGTTTTTTATTAGGGATTACTATTTTATTACAAATTATATCTGGAATCTTCTTAGGTTTACATTATACATCAGATATTAATTCAGCATATTTTAGTATTTTCTTTATTATTAGAGAAATATATTATGGATGGTGTTTACGTTATCTTCATTCTAATGGTTCATCATTTGTCTTTCTTTTGATATTTCTACATCTTGGAAGAGCTATATCTTATGGTTCATATTTTTATAATCCAAATACTTGGTTTTCTGGAATTATTATTATCTTCTTCTTAATGGGAACAGCATTTATGGGTTATGTGTTACCTTTAGGACAAATGAGTTTATGGGGGGTTACAGTAATTACAAATTTATTATCTGCATTTCCATCTTTAATAGAATGGCTTTGTGGAGGACATTACATTTACAATCCTACATTTAAGAGGTTCTTTGTCTTTCATTTTCTATTTCCATTTCTTCTTTGTGGTTTTCTTCTTTATCATATTTTTAATCTACATTTTCTATCTTCTAATAATCCTTTAAGGAATTCCACTAATAATAAAATAGCATTTTTCCCTTTCATTATTAGTAAAGATTTATATGGAAAGATATTAATTCTCTATCTATATCTTCTTCAAATTCATTTCGGTTTCTCTTCTTTCTCACATCCAGATAATGCATTAGAAGCATGTGGATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCTTATGCCAATATGCTATGTTAAAAGCTGTGCCAAATAAAAATGCAGGATTCATTATATTATTTACTTCTATCTTCATCTTATTTTACTTTATGAGAAGTCTTTCAATCTCATTCTATTTTATAATATTTTTCACCAATAGATTTAATGGTTTTTATCTGTGCTTTTGGTTTCTTCTTCTTTTTTCRRR-TATTATTTATTATCTGGATTCATCTTTGGAATCTCCGGTACATTAATATCAGTCCTTATAAGAATAGAATTATATTCTTCAGGAAATAGGATTATATCTCCAGAAAACCAGAACTTCTATAATATAAGCATTACATTGCATGGCTTTCTTATGATTTTCTTTTTAGTAATGCCTGGCTTGTTTGGAGGATTTGGAAATTATTTTGTACCTATCTTTCAAGGGTCTCCAGAAGTGGTATATCCTAGAGTCAATAATTTTTCTATCTTAATTCTTTTGCTTTCATATCTTTTCCTAATCCTTTCTTTAATCTCAGAATTTGGAGGTGGTACAGGGTGGACGCTCTACCCACCATTATCCACTTCTTTTATGACTTTATCACCTTCAAGTACAGGAAATCTTATATTTGGATTAATAATCTCTGGTATATCTTCATGTCTTACATCTCTTAACTTTTGGACAACAATTCATTTTCTGAGATCTTATTATCTGATATTATCTTCTATCCCATTATTTCCTTGGGCTTTCTTGATTACAGCTTTCATGCTTTTATTAACATTACCAATCTTATCTGGTACACTTCTTTTAATATTGGGTGATCTTCATTCTAATACACTTTTCTTTGATCCAATATTTGGAGGAGATCCTATATTCTATCAACATTTATTTTGGTTTTTTGGACATCCAGAAGTTTACATATTAATAATTCCTGCATTTGGGATCATTTCCATAATAATTTCTGGTATTTTACAGTTAATAATCTTTGCTAACCAATCAATGATCTTTGCCATGTCATCTATTTCTCTTCTTGGAGGTCTTGTTTGGGGACATCATATGTATACTGTAGGTTTAGAAAGTGATACAAGAGCTTATTTTACAGGAGTTACAATCTTAATATCCTTACCAACTGGTACAAAAATCTTTAATTGGCTTTTTACATATCTCTCAAATCCACCATTATTACACCTTAGAATTACTTCTGTCTTCCTCTCACATCTCTTTTTAT
Cladocopium_goreaui_rt152						TTGTCTGACTTCATGCTAGAGGCATGCACCTGCATCCCAGCGGTTGCAAGCATGAGCAGCGTCACTCAAGTAAAACCACGAAGGTAGAAACCTGAATAACAGCGCGCAAAGCATTTTGCAAGAACCAAGCAATTAACAAGCCATTGGCTCAGAGGG-nnnCAATAGCTCATAAGAAC-nnGCAA-GGCAGAAAC-ACATCCTGCTTGCAAAGTTGGGGCAAGTTAAGCACTGAAGCAGACATACTCTCAGGAAATCCCAAGAGTGCAACGCACGTTCAGGAGGCCATTGGTTRRR-GGGGAAAAGGAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATTAGCTCAGGCTGGAAACTGAAGCTTnnCGGTTTYGGGATGTAGCCTGCAGGCnATAnGTGCTATCGGCGGCTCGAGCGTAAGCCTCTTGGAATAGAnGCGTGTGCCCGGGTGAGAATCCTGTGTTTCGCTTGATGnTCCGCTGTCCnACAGCACTTGTTCTCAGAGTCACGCTCCTCGGAATTnGGAGCGTAAATAAGGTnGGTAAATTTCATCTAAAGCTAAATACGGGCTCnGAGACCGATAGTGAACAAGTACCATnGAGGGAAAGATGAAAAGGACTTTGGAAAGAGAGTTAAAnAGTGCTTnGAAATCGCTnnGAAAGGGAAGCGAAGAGAAnCCnnACACGTnnCTTGCTGAGnATTGCTGTAGGCTGCTGTGAGnnnnnnCCTTGGnnGCACATCAGnCGCAAGCTGTGTGCTTAAnGCGTGAATAnnnnGTTGTnCTGCTGTGTTTCTTAGCTTGCGCGTCACTTGCCnnACACCTGTTTGAGGATGGCCTTCAGCTCGCAGnGnGCACATTnTGCnGGATGCGTCTCTGGGCTGTTAGGGATTCAGACAAGCnGTGGCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTTGACTCATTGGTTTTTTTCGACCCGRRR-nnnnnnnnnnGAGCACTCCCACCAATAATTAAGCTACCTATTTTAGTGATGATAAGCCGACATCGAGGTACATTTTTCGTGATAATGTGACCTTTAATATTGCGGAAATTAAGCCTGTTATCCGTAGAGTAGCTTAACTCGGGTAAATTAATTTAAAGCTCATTAAGATAGCATTTAAGTACTGGGAAGGACTTGTTGGGCCATTAAGCGAAACATGTATCTTTGCACTTATTAGTTGGTCA-AAAGTTTAGGATCCTTGTATCGCTTTGTTCACCTTAGGTGGCTGTTGATAAGGTTATCGCCCCAATTAAACAGTGGTCTTAGGAGAAAA-nnnnnnCCAATAATTTACTACTTTAGCTGGCATGCAATAAGAATATTTGTATTGAGAATGTTACCCAAGTTTTATCCCTATAAAGCTTCAGAGGGTCTTTTTGTCCTTTAGTGTTAAT-nnnnnnnnAAACTTTAGTCAGCATATTATTCGTACTGATGAATATTTTACCATGATGTGTGTGCAAGACAGCTATCGAATCGTTCTATGTTTCATGCAGGTCGTTATTAGGACGACAAGGAAATTTGCTACCTTAGGACRRR-AATTATTTTTGGAATCTTGGTTTTTTATTAGGGATTACTATTTTATTACAAATTATATCTGGAATCTTCTTAGGTTTACATTATACATCAGATATTAATTCAGCATATTTTAGTATTTTCTTTATTATTAGAGAAATATATTATGGATGGTGTTTACGTTATCTTCATTCTAATGGTTCATCATTTGTTTTTCTTTTTATATTTCTACATCTTGGAAGAGCTATATCTTATGGTTCATATTTTTATAATCCAAATACTTGGTTTTCTGGAATTATTATTATCTTCTTCTTAATGGGAACAGCATTTATGGGTTATGTGTTACCTTTAGGACAAATGAGTTTATGGGGAGTTACAGTAATTACAAATTTATTATCTGCATTTCCATCTTTAATAGAATGGCTTTGTGGAGGACATTACATTTACAATCCTACATTTAAGAGGTTCTTTGTCTTTCATTTTCTATTTCCATTTCTTCTTTGTGGTTTTCTTCTTTATCATATTTTTAATCTACATTTTCTATCTTCTAATAATCCTTTAAGGAATTCCACTAATAATAAAATAGCATTTTTCCCTTTCATTATTAGTAAAGATTTATATGGAAAGATATTAATTCTCTATCTATATCTTCTTCAAATTCATTTCGGTTTCTCTTCTTTCTCACATCCAGATAATGCATTAGAAGCATGTGGATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCTTATGCCAATATGCTATGTTAAAAGCTGTGCCAAATAAAAATGCAGGATTCATTATATTATTTACTTCTATCTTCATCTTATTTTACTTTATGAGAAGTCTTTCAATCTCATTCTATTTTATAATATTTTTCACCAATAGATTTAATGGTTTTTATCTGTGCTTTTGGTTTCTTCTTCTTTTTTCRRR-TATTATTTATTATCTGGATTCATCTTTGGAATCTCCGGTACATTAATATCAGTCCTTATAAGAATAGAATTATACTCTTCAGGAAATAGGATTATATCTCCAGAAAACCAGAACTTCTATAATATAAGCATTACATTGCATGGCTTTCTTATGATTTTCTTTTTAGTAATGCCTGGCTTGTTTGGAGGATTTGGAAATTATTTTGTACCTATCTTTCAAGGGTCTCCAGAAGTGGTATATCCTAGAGTCAATAATTTTTCTATCTTAATTCTTTTCCTTTCATATCTTTTCCTAATCCTTTCTTTAATCTCAGAATTTGGAGGTGGTACAGGGTGGACGCTCTACCCACCATTATCCACTTCTTTTATGACTTTATCACCTTCAAGTACAGGAAATCTTATATTTGGATTAATAATCTCTGGTATGTCTTCATGTCTTACATCTCTTAACTTTTGGACAACAATTCATTTTCTGAGATCTTATTATCTGATATTATCTTCTATCCCATTATTTCCTTGGGCTTTCTTGATTACAGCTTTCATGCTTTTATTAACATTACCAATCTTATCTGGTACACTTCTTTTAATATTGGGTGATCTTCATTCTAATACACTTTTCTTTGATCCAATATTTGGAGGAGATCCTATATTCTATCAACATTTATTTTGGTTTTTTGGACATCCAGAAGTTTACATATTAATAATTCCTGCATTTGGGATCATTTCCATAATAATTTCTGGGATTTTACAGTTAATAATCTTTGCTAACCAATCAATGATCTTTGCCATGTCATCTATTTCTCTTCTTGGAGGTCTTGTTTGGGGACATCATATGTATACTGTAGGTTTAGAAAGTGATACAAGAGCTTATTTTACAGGAGTTACAATCTTAATATCCTTACCAACTGGTACAAAAATCTTTAATTGGCTTTTTACATATCTCTCCAATCCACCATTATTACACCTTAGAATTACTTCTGTCTTCCTCTCACATCTCTTTTTAT
Cladocopium_infistulum_rt203					TTGTCTGACTTCATGCTAGAGGCATGCACCTGCATCCCAGCGGTTGCAAGCATGAGCAGCGTCACTCAAGTAAAACCGCGAAGGTAGAAACTTGAATAACAGCGCGCAAAGCATTTTGCAAGAACCAAGCAATTAACAAGCCATTGGCGCAGAAGG-nnnCAATAGCTCATAAGAAC-nnGCAA-GGCAGAAAC-ACATCCTGCTTGCAAAGTTGGGGCAAGTTAAGCACTGAAGCAGACATACTCTCAGGAAATCCCAAGAGTGCAACGCACGTTCAGGAGGCCATTGGTTRRR-GGGGAAAAGGAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATTAGCTCAGGCTGGAAACTGAAGCTTnnCGGTTTCGGGATGTAGCCTGCAGGCnATAnGTGCTATCGGCGGCTCGAGCGTAAGCCTCTTGGAATAGAnGCGTGTGCCCGGGTGAGAATCCTGTGTTTCGCTTGATGnTCCGCTGTCCnACAGCACTTGTTCTCAGAGTCACGCTCCTCGGAATTnGGAGCGTAAATAAGGTnGGTAAATTTCATCTAAAGCTAAATACGGGCTCnGAGACCGATAGTGAACAAGTACCATnGAGGGAAAGATGAAAAGGACTTTGGAAAGAGAGTTAAAnAGTGCTTnGAAATCGCTnnGAAAGGGAAGCGAAGAGAAnCCnnACACGTnnCTTGCTGAGnATTGCTGTAGGCTGCTGTGAGnnnnnnCCTTGGnnGCGCATCAGnCGCAAGCTGTGTGCTTAAnGCGTGAATAnnnnGTTGTnCTGCTGTGTTTCTTAGCTTGCGCGTCACTTGCCnnACACCTGTTTGAGGATGGCCTTCAGCTCGCAGnGnGCACATTnTGCnGGATGCGTCTCTGGGCTGTTAGGGATTCAGACAAGCnGTGGCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTTGACTCATTGGTTTTTTTCGACCCGRRR-nnnnnnnnnnGAGCACTCCCACCAATAATTAAGCTACCTATTTTAGTGATGATAAGCCGACATCGAGGTACATTTTTCGTGATAATGTGACCTTTAATATTGCGGAAATTAAGCCTGTTATCCGTAGAGTAGCTTAACTCGGGTAAATTAATTTAAAGCTCATTAAGATAGCATTTAAGTACTGGTAAGGACTTGTTGGGCCATTAAGCGAAACATGTATCTTTGCACTTATTAGTTGGTCA-AAAGTTTAGGATCCTTGTATCGCTTTGTTCACCTTAGGTGGCTCTTGATAAGGTTATCGCCCCAATTAAACAGTGGTCTTAGGAGAAAA-nnnnnnCCAATAATTTACTACTTTAGCTGGCATGCAATAAGAATATTTGTATTGAGAATGTTACCCAAGTTTTATCCCTATAAAGCTTCAGAGGGTCTTTTTGTCCTTTAGTGTTAAT-nnnnnnnnAAACTTTAGTCAGCATATTATTCGTACTGATGAATATTTTACCATGATGTGTGTGCAAGACAGCTATCGAATCGTTCTATGTTTCATGCAGGTCGTTATTAGGACGACAAGGAAATTTGCTACCTTAGGACRRR-AATTATTTTTGGAATCTTGGTTTTTTATTAGGGATTACTATTTTATTACAAATTATATCTGGAATCTTCTTAGGTTTACATTATACATCAGATATTAATTCAGCATATTTTAGTATTTTCTTTATTATTAGAGAAATATATTATGGATGGTGTTTACGTTATCTTCATTCTAATGGTTCATCATTTGTCTTTCTTTTCATATTTCTACATCTTGGAAGAGCTATATCTTATGGTTCATATTTTTATAATCCAAATACTTGGTTTTCTGGAATTATTATTATCTTCTTCTTAATGGGAACAGCATTTATGGGTTATGTGTTACCTTTAGGACAAATGAGTTTATGGGGGGTTACAGTAATTACAAATTTATTATCTGCATTTCCATCTTTAATAGAATGGCTTTGTGGAGGACATTACATTTACAATCCTACATTTAAGAGGTTCTTTGTCTTTCATTTTCTATTTCCATTTCTTCTTTGTGGTTTTCTTCTTTATCATATTTTTAATCTACATTTTCTATCTTCTAATAATCCTTTAAGGAATTCCACTAATAATAAAATAGCATTTTTCCCTTTCATTATTAGTAAAGATTTATATGGAAAGATATTAATTCTCTATCTATATCTTCTTCAAATTCATTTCGGTTTCTCTTCTTTCTCACATCCAGATAATGCATTAGAAGCATGTGGATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCTTATGCCAATATGCTATGTTAAAAGCTGTGCCAAATAAAAATGCAGGATTCATTATATTATTTACTTCTATCTTCATCTTATTTTACTTTATGAGAAGTCTTTCAATCTCATTCTATTTTATAATATTTTTCACCAATAGATTTAATGGTTTTTATCTGTGCTTTTGGTTTCTTCTTCTTTTTTCRRR-TATTATTTATTATCTGGATTCATCTTTGGAATCTCCGGTACATTAATATCAGTCCTTATAAGAATAGAATTATATTCTTCAGGAAATAGGATTATATCTCCAGAAAACCAGAACTTCTATAATATAAGCATTACATTGCATGGCTTTCTTATGATTTTCTTTTTAGTAATGCCTGGCTTGTTTGGAGGATTTGGAAATTATTTTGTACCTATCTTTCAAGGGTCTCCAGAAGTGGTATATCCTAGAGTCAATAATTTTTCTATCTTAATTCTTTTGCTTTCATATCTTTTCCTAATCCTTTCTTTAATCTCAGAATTTGGAGGTGGTACAGGGTGGACGCTCTACCCACCATTATCCACTTCTTTTATGACTTTATCACCTTCAAGTACAGGAAATCTTATATTTGGATTAATAATCTCTGGTATATCTTCATGTCTTACATCTCTTAACTTTTGGACAACAATTCATTTTCTGAGATCTTATTATCTGATATTATCTTCTATCCCTATATTTCCTTGGGCTTTCTTGATTACAGCTTTCATGCTTTTATTAACATTACCAATCTTATCTGGTACACTTCTTTTAATATTGGGTGATCTTCATTCTAATACACTTTTCTTTGATCCAATATTTGGAGGAGATCCTATATTCTATCAACATTTATTTTGGTTTTTTGGACATCCAGAAGTTTACATATTAATAATTCCTGCATTTGGGATCATTTCCATAATAATTTCTGGTATTTTACAGTTAATAATCTTTGCTAACCAATCAATGATCTTTGCCATGTCATCTATTTCTCTTCTTGGAGGTCTTGTTTGGGGACATCATATGTATACTGTAGGTTTAGAAAGTGATACAAGAGCTTATTTTACAGGAGTTACAATCTTAATATCCTTACCAACTGGTACAAAAATCTTTAATTGGCTTTTTACATATCTCTCAAATCCACCATTATTACACCTTAGAATTACTTCTGTCTTCCTGTCACATCTCTTTTTAT
Cladocopium_infistulum_Pal19_02_inshore 		TTGTCTGACTTCATGCTAGAGGCATGCACCTGCATCCCAGCGGTTGCAAGCATGAGCAGCGTCACTCAAGTAAAACCGCGAAGGTAGAAACTTGAATAACAGCGCGCAAAGCATTTTGCAAGAACCAAGCAATTAACAAGCCATTGGCGCAGAAGG-nnnCAATAGCTCATAAGAAC-nnGCAA-GGCAGAAAC-ACATCCTGCTTGCAAAGTTGGGGCAAGTTAAGCACTGAAGCAGACATACTCTCAGGAAATCCCAAGAGTGCAACGCACGTTCAGGAGGCCATTGGTTRRR-GGGGAAAAGGAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATTAGCTCAGGCTGGAAACTGAAGCTTnnCGGTTTCGGGATGTAGCCTGCAGGCnATAnGTGCTATCGGCGGCTCGAGCGTAAGCCTCTTGGAATAGAnGCGTGTGCCCGGGTGAGAATCCTGTGTTTCGCTTGATGnTCCGCTGTCCnACAGCACTTGTTCTCAGAGTCACGCTCCTCGGAATTnGGAGCGTAAATAAGGTnGGTAAATTTCATCTAAAGCTAAATACGGGCTCnGAGACCGATAGTGAACAAGTACCATnGAGGGAAAGATGAAAAGGACTTTGGAAAGAGAGTTAAAnAGTGCTTnGAAATCGCTnnGAAAGGGAAGCGAAGAGAAnCCnnACACGTnnCTTGCTGAGnATTGCTGTAGGCTGCTGTGAGnnnnnnCCTTGGnnGCGCATCAGnCGCAAGCTGTGTGCTTAAnGCGTGAATAnnnnGTTGTnCTGCTGTGTTTCTTAGCTTGCGCGTCACTTGCCnnACACCTGTTTGAGGATGGCCTTCAGCTCGCAGnGnGCACATTnTGCnGGATGCGTCTCTGGGCTGTTAGGGATTCAGACAAGCnGTGGCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTTGACTCATTGGTTTTTTTCGACCCGRRR-nnnnnnnnnnGAGCACTCCCACCAATAATTAAGCTACCTATTTTAGTGATGATAAGCCGACATCGAGGTACATTTTTCGTGATAATGTGACCTTTAATATTGCGGAAATTAAGCCTGTTATCCGTAGAGTAGCTTAACTCGGGTAAATTAATTTAAAGCTCATTAAGATAGCATTTAAGTACTGGTAAGGACTTGTTGGGCCATTAAGCGAAACATGTATCTTTGCACTTATTAGTTGGTCA-AAAGTTTAGGATCCTTGTATCGCTTTGTTCACCTTAGGTGGCTCTTGATAAGGTTATCGCCCCAATTAAACAGTGGTCTTAGGAGAAAA-nnnnnnCCAATAATTTACTACTTTAGCTGGCATGCAATAAGAATATTTGTATTGAGAATGTTACCCAAGTTTTATCCCTATAAAGCTTCAGAGGGTCTTTTTGTCCTTTAGTGTTAAT-nnnnnnnnAAACTTTAGTCAGCATATTATTCGTACTGATGAATATTTTACCATGATGTGTGTGCAAGACAGCTATCGAATCGTTCTATGTTTCATGCAGGTCGTTATTAGGACGACAAGGAAATTTGCTACCTTAGGACRRR-AATTATTTTTGGAATCTTGGTTTTTTATTAGGGATTACTATTTTATTACAAATTATATCTGGAATCTTCTTAGGTTTACATTATACATCAGATATTAATTCAGCATATTTTAGTATTTTCTTTATTATTAGAGAAATATATTATGGATGGTGTTTACGTTATCTTCATTCTAATGGTTCATCATTTGTCTTTCTTTTCATCTTTCTACATCTTGGAAGAGCTATATCTTATGGTTCATATTTTTATAATCCAAATACTTGGTTTTCTGGAATTATTATTATCTTCTTCTTAATGGGAACAGCATTTATGGGTTATGTGTTACCTTTAGGACAAATGAGTTTATGGGGGGTTACAGTAATTACAAATTTATTATCTGCATTTCCATCTTTAATAGAATGGCTTTGTGGAGGACATTACATTTACAATCCTACATTTAAGAGGTTCTTTGTCTTTCATTTTCTATTTCCATTTCTTCTTTGTGGTTTTCTTCTTTATCATATTTTTAATCTACATTTTCTATCTTCTAATAATCCTTTAAGGAATTCCACTAATAATAAAATAGCATTTTTCCCTTTCATTATTAGTAAAGATTTATATGGAAAGATATTAATTCTCTATCTATATCTTCTTCAAATTCATTTCGGTTTCTCTTCTTTCTCACATCCAGATAATGCATTAGAAGCATGTGGATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCTTATGCCAATATGCTATGTTAAAAGCTGTGCCAAATAAAAATGCAGGATTCATTATATTATTTACTTCTATCTTCATCTTATTTTACTTTATGAGAAGTCTTTCAATCTCATTCTATTTTATAATATTTTTCACCAATAGATTTAATGGTTTTTATCTGTGCTTTTGGTTTCTTCTTCTTTTTTCRRR-TATTATTTATTATCTGGATTCATCTTTGGAATCTCCGGTACATTAATATCAGTCCTTATAAGAATAGAATTATATTCTTCAGGAAATAGGATTATATCTCCAGAAAACCAGAACTTCTATAATATAAGCATTACATTGCATGGCTTTCTTATGATTTTCTTTTTAGTAATGCCTGGCTTGTTTGGAGGATTTGGAAATTATTTTGTACCTATCTTTCAAGGGTCTCCAGAAGTGGTATATCCTAGAGTCAATAATTTTTCTATCTTAATTCTTTTGCTTTCATATCTTTTCCTAATCCTTTCTTTAATCTCAGAATTTGGAGGTGGTACAGGGTGGACGCTCTACCCACCATTATCCACTTCTTTTATGACTTTATCACCTTCAAGTACAGGAAATCTTATATTTGGATTAATAATCTCTGGTATATCTTCATGTCTTACATCACTTAACTTTTGGACAACAATTCATTTTCTGAGATCTTATTATCTGATATTATCTTCTATCCCTATATTTCCTTGGGCTTTCTTGATTACAGCTTTCATGCTTTTATTAACATTACCAATCTTATCTGGTACACTTCTTTTAATATTGGGTGATCTTCATTCTAATACACTTTTCTTTGATCCAATATTTGGAGGAGATCCTATATTCTATCAACATTTATTTTGGTTTTTTGGACATCCAGAAGTTTACATATTAATAATTCCTGCATTTGGGATCATTTCCATAATAATTTCTGGTATTTTACAGTTAATAATCTTTGCTAACCAATCAATGATCTTTGCCATGTCATCTATTTCTCTTCTTGGAGGTCTTGTTTGGGGACATCATATGTATACTGTAGGTTTAGAAAGTGATACAAGAGCTTATTTTACAGGAGTTACAATCTTAATATCCTTACCAACTGGTACAAAAATCTTTAATTGGCTTTTTACATATCTCTCAAATCCACCATTATTACACCTTAGAATTACTTCTGTCTTCCTGTCACATCTCTTTTTAT
Halluxium_pauxillum								TTGTCTGACTTCATGCTAGAGGCATGCGCCAGCACCCCAGCGGTTGCATGCATGAGCAGCGTCACTCAAGCGGAGCCGTGCAGGCA-AAGCTTGAATAACAGCGCGCAAAGCATTTTGCAGGAACCAACCAATCAACAAGCCATTGGCGCA-nAGGAGCGCAATAGCTCATAGGAACGCAAGGCAGACAGAAACTTCAATCTGCTTGCAAAGTTGGG-TAAGCTAAGCACTGAAGCAGACATACTCTCAGGAAATCCCGAGAGTGCAACGCACGTTCAGGAGGCCATTGGTTRRR-GAGGAAAAGGAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATTAGCTCAGGCTTGAAACTGAAGCTTnnCGGTTTCGGGTTGTAGCCTGCAGGCnATAnGTGCTATCGGCGGCTCGAGCGTAAGCCTCTTGGAATAGAnGCGTGCGCCCGGGTGAGAATCCTGCGTCTCGCTTGATGnTCCGCTGTCCnACAGCACTTGTTCTCAGAGTCACGCTCCTCGGAATTnGGAGCGTAAATAAGGTnGGTAAATTTCATCTAAAGCTAAATACGGGCCCnGAGACCGATAGCGAACAAGTACCATnGAGGGAAAGATGAAAAGGACTTTGGAAAGAGAGTTAAAnAGTGCTTnGAAATCGCTnnGAAAGGGAAGCGAAGGGAAnCCnnACAAGTnnCTTGCTGAGnATTGCTGCAGGCTGCTGTGAGnnnnnnCTTTGGnnGTGTAGAAGnCGCAAGCTTTATACTCAGnGTGTGAGCTnnnnGCTGCnCTGTAGTGTTTCTTAGTTTGCGCGTCACTTGCCnnACACTTGTTTGAGGATGGCCTTCGGCTCGCAGnGnGCACATTnTGCnGAATGAGCTCCTGGGCTGTTTGGGATTCAGACAAACnGTGGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTTGACTCATTGGTTTTTTTCGACCCGRRR-ATTATGGGATGAGCACTCCCACCAATAATTTAGCTACCTATTTT-GTTCTGATAAGCCGACATCGAGGTGCATTTTTCTTGATAATGTGACCTTGAATATTGCGGAAATTAAGCCTGTTATCCGTAGAGTAGCTTGAATCGGGTAGATTAATTTTAAGCTCATTAAGACAGCATTTAAACACTGGGAAGGACTTGTTGGGCCATTAAGCAAAACATGTATCTTTGAACTTATTAGTTGGTCATATAATTTAGGGTCCTTGTATTACTTTGTTCACCTTAGTTGGATTTTGATAAGGTTATCGCCCCAATTAAACAGTGGTCTTAGGAGGTACAGGTTCTGTAAGACTTGAAACTATTAGCTGGTATGCAATAAGAATATTTAGATCAAGAAT-TTACCCAAGTTTTATCCCTATAAAGCTTCAAAGGGTCTTTTTGTCCTTTAGTGTCAATTTCATTTTGAGGAAGGTCGCAGCATATTATTTGTACTGATGAATATTTTACCATGATGTTTGTGCAAGACAGCTATCGAATCGTTCTATGTTTCATGCAGGTCGTTATTAAGACGACAAGGAAATTTGCTACCTTAGGACRRR-AATTATTTTTGGAATCTTGGTTTTTTATTAGGGATTACTATTTTATTACAAATTATATCTGGAATCTTCTTAGGTTTACATTATACATCAGATATTAATTCAGCATATTTTAGTATTTTCTTTATTATTAGAGAAATATATTATGGATGGTGTTTACGTTATCTTCATTCTAATGGTTCATCATTTGTCTTTCTTTTGATATTTCTACATCTTGGAAGAGCTATATCTTATGGTTCATATTTTTATAATCCAAATACTTGGTTTTCTGGAATTATTATTATCTTCTTCTTAATGGGAACAGCATTTATGGGTTATGTGTTACCTTTAGGACAAATGAGTTTATGGGGGGTTACAGTAATTACAAATTTATTATCTGCATTTCCATCTTTAATAGAATGGCTTTGTGGAGGACATTACATTTACAATCCTACATTTAAGAGGTTCTTTGTCTTTCATTTTCTATTTCCATTTCTTCTTTGTGGTTTTCTTCTTTATCATATTTTTAATCTACATTTTCTATCTTCTAATAATCCTTTAAGGAATTCCACTAATAATAAAATAGCATTTTTCCCTTTCATTATTAGTAAAGATTTATATGGAAAGATATTAATTCTCTATCTATATCTTCTTCAAATTCATTTCGCTTTCTCTTCTTTCTCACATCCAGATAATGCATTAGAAGCATGTGGATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCTTATGCCAATATGCTATGTTAAAAGCTGTGCCAAATAAAAATGCAGGATTCATTATATTATTTACTTCTATCTTCATCTTATTTTACTTTATGAGAAGTCTTTCAATCTCATTCTATTTTATAATATTTTTCACCAATAGATTTAATGGTTTTTATCTGnnnnnnnnnnnnnnnnnnnnnnnnnnRRR-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn








;
end;

BEGIn Paup;
pset opt=deltran;
[outgroup S_micro;]
set autoclose=yes warnreset=no maxtrees=100 increase=no;
set criterion = parsimony;
hsearch addseq=random;
[
contree all/strict [root=outgroup outroot=monophyl];
savetree savebootp=nodelabels brlens=yes file=new_consens.tre;
describetree 1/plot=phylogram brlens=yes;
savetree from =1 to =1 savebootp=nodelabels brlens=yes file=new.tre;

bootstrap search=heuristic nreps=1000 conlevel=50;
savetrees from=1 to =1 savebootp=nodelabels maxdecimals=1 brlens=yes file=newboot.tre;
]
end;