LOCUS RRP7toBIK1_SNPs 6866 bp DNA linear SYN 22-Apr-2021 DEFINITION . FEATURES Location/Qualifiers CDS complement(<1..52) /gene="RRP7" CDS complement(join(418..2299,5816..6264)) /gene="his4" variation 506..515 /note="ins(GAATAGTTTC) - creates XmnI" variation 892..894 /note="CAGtoGCT" variation 1104 /note="GtoC" variation 1154..1160 /note="AATAGTTtoCCACTAG" /note="XmnI - deleted" /note="SpeI - created" variation 1732..1737 /note="CGGAAGtoACGCGT" variation 1771 /label="AtoG" variation 2100 /note="TtoA" variation 2109 /note="TtoC" CDS complement(2382..3185) /note="URA3-SNPs" variation 2421 /note="GtoC" variation 2517 /note="CtoG" variation 2580 /note="GtoC" variation 2643 /note="GtoC" variation 2712 /note="GtoC" variation 2813 /note="CtoG" variation 3027 /note="GtoC" variation 3129 /note="GtoC" variation 3242 /note="GtoC" variation 3341 /note="CtoG" misc_feature 3390 /note="DSB-centroid" repeat_region 3405..3466 /note="telomeric sequence inserted" variation 3453 /note="GtoC" variation 3554 /note="CtoG" variation 3649 /note="CtoA" variation 3750 /note="CtoT" variation 3759 /note="CtoG" variation 3865 /note="GtoC" CDS 3933..5324 /note="ARG4-SNPs" variation 3965 /note="GtoC" variation 4073 /note="GtoC" variation 4205 /note="GtoC" variation 4292 /note="CtoG" variation 4379 /note="CtoG" variation 4455 /note="TtoC" variation 4457 /note="GtoC" variation 4541 /note="AtoG" variation 4658 /note="GtoC" variation 4766 /note="CtoG" variation 4838 /note="CtoG" variation 4964 /note="CtoG" variation 5051 /note="CtoG" variation 5123 /note="CtoG" variation 5195 /note="GtoC" variation 5270 /note="CtoG" variation 5325 /note="CtoA" variation 5328 /note="AtoC" variation 5330 /note="GtoT" variation 6002 /note="CtoT" variation 6014 /note="CtoT" variation 6019 /note="CtoT" variation 6021 /note="AtoT" variation 6024 /note="TtoA" variation 6026 /note="GtoT" primer_bind 6126..6131 /note="GACAAAtoACTAGT-creates SpeI" variation 6143..6152 /note="Used for scoring - AACTTCTTCCTCTTTGGAGAACTGGAGAATCTCTT to CCCCTCTCGG" /note="6143:6144-AACTTCTTtoCC - deletes XmnI" /note="6150:6152-TTGGAGAACTGGAGAATCTCTTtoCGG - deletes XmnI" /note="This deletion spans 2 XmnI sites with respect to WT used" variation 6486 /note="GGCATGCtoA - deletes SphI" variation 6516 /note="GtoA creates XmnI site for RFLP" CDS complement(6530..>6866) /gene="BIK1" BASE COUNT 1951 A 1444 C 1333 G 2138 T 0 OTHER ORIGIN 1 ACGGCACCAC TATAAACCCG TTCTTCATGG CGCTAATGTC TTCAATACCC ATCCCGTAAC 61 ACTGTATCTG AGGTTGTTAT CTGTTACCTA GTTCGTTCGC CCTAAATGCC TCTTGCTTTA 121 CCATCCTCTC AATGTTCTCT TCTTTTTCCT GCTTATTTCT TAGGTGACCA AAAAGTGAAA 181 AATTTTCCAA TTTAACTTAC GTCGTTCGAA GTGATGACAA TAAGGATATT CATTTATTAA 241 TCGCTATTTG ATACCCACTC TTGCTACTAC CTCTCTTTTA ATCCAAAATT ACAATTTTTA 301 CGTTACCATT CATTACATAG TGTATCTCTA TTCATTCAAG ACTGTATTTT GTTTGATATA 361 TATATGTATA TATACATATT ATTTTCGTTA GTGTTCGGTT TCCAAGTTAG AAATAATCTA 421 CTGGAAATCC TTTGGGATCA ACCCAAGCTT ACTCATTCTG ATTTTCACAG CGTTTCTGTG 481 ACCGTCTAGA CCCTCCTTCT TGGCAGAATA GTTTCACGCA CATAACAGCT CTACCGATGT 541 TTTCTAAACC TTCAGGGGTA ATGTTTTGGG CAGTGATAAA CTTTTGGAAG GTTGCAGTGT 601 TGGCACCACT GTACTGCCTA GCGTAACCAT ACGTTGGTAA TGTATGGTTG GTACCACTTG 661 AATAGTCACC GCACGATTCT GGAGTGTAAG CACCCACAAA TACGGACCCT GCATTGTCAA 721 CCAATTTAAC ATAATCGTTA GCATTGGCGA TTTGTAGAAT CAAATGTTCT GGTGCATATT 781 GGTTGGACAT TTCAAGGGCT TCTTCGTAAC CGTCACAAAG AACGATCGTA CTGTGAGCAA 841 TACATTTACG AACAATATCC ACACGTGGTA GTTGTAAAGC TTGATTGTGG AGCTCATCTT 901 GAATCTCTTG AATTTTCTTT TCGCTCAAGT TAACACCAAC AAGGATAACT TGGGAGTCAA 961 TACCGTGTTC AGCTTGCGAT AGCAAATCAC TTGCAACAAA ATCCACATCG GCATCTTCAT 1021 CGGCAATAAC CAAAACTTCA CTTGGGCCAG CTGGCATATC AATGGAACAT AGAGCTTGAG 1081 TGTCATTTTG AACATACATT TTGCCGGCAG TCACAAATTG ATTACCTGGA CCCAAGATCT 1141 TATCCACTTT AGGCCACTAG TCTGTCCCGT AAGCCATAGC AGCAACGGCT TGGGCACCAC 1201 CAGCTAGAAC AATCTTGGAA GCACCAACTT TTTCTGCGAC ATAAACAACT TCGGGTGAGA 1261 CTTTACCATC AGATTTTCTT GGTGGAGATG CAAACACAAT CTCCTTACAT TGGGCAACTT 1321 GTGCTGGAAC ACCAAGCATT AATGCAGTAC TTGGTAAAAT GGCAGTGCCA CCAGGGATAT 1381 ACAAACCAAC TTTTTCAATT GGACGAGGGA ATCTGGAACA CAAGACACCA GGTTGGGTTT 1441 CAACTTCAAG AGTCTCTGTT GGCAATTGAG CAGCATGGAA TTTGCGGACG TTTTCAATTG 1501 AAAGGTCCAA AGCTTCCTTC ATTTCCTCGG TTAAACCTTC AAAGTATTCT TCTGGGAATG 1561 GAGCATTGAG AACAGGATTG GATAATTTTA CACCATCAAA CTTTTCTGTG TACTCCAAAA 1621 GGGCAGAGTT ACCTTTGTCT CTAACATTTT CGATGATCGG ATTGACTAAA TGCATAATTT 1681 CAGAAGTCTT TTGGATTGGT CTGCTCAAAG CCTTCTGCAC ACCAACTTTG TACGCGTCCT 1741 TCACCACGTC CAAGTGAATT GGACCGGTCA GTTTTTCTTC TTCAGCCTTT GGTTGTCCAA 1801 CAAACTTTGG CTTAGCATCA CCTTTCCGTC TTGTAACCTT CAGATGCTTC ATATTCAGAT 1861 TATTCTCGAC GTCCTTCAAT GAAACATCGT TGGCCACTAA TTTGGCCAGT GCAAAGTAGA 1921 ACAAATCGGC AGCCTCCCAA GAAAGCTCCT TCTTACCCTT TGCCTCAGTC AGTTCTTCAG 1981 CTTCTTCCTT GATCTTGGCA TCTAACAATG CAGAGTCGTT GAATAGTCTT CTAGTATAAG 2041 ATTCCTCTGG AGCGTCCTGT AGCCTTTGTT TTAGTAAAGA TTCTAGCCCC ACCAAACCAA 2101 GCTTGAATCC ACCAAAGCAA GACATGGTCT CCAAGTGGCA AAATCCAACG TTTTCTTGTT 2161 CAACGATAAA CTTTAAGGCA TCCGAATCAC AGTCAGTAGA GATTTGTAAA AGCTTTTGGC 2221 CATTGCCAGA AGTTTCACCC TTGATCCAGA TTTCATTCCT AGAACGAGAA TAATAAACGC 2281 CACGACCCAA ATCGATCGCG AGCGGGTAAT AACTGATATA ATTAAATTGA AGCTCTAATT 2341 TGTGAGTTTA GTATACATGC ATTTACTTAT AATACAGTTT TTTAGTTTTG CTGGCCGCAT 2401 CTTCTCAAAT ATGCTTCCCA CCCTGCTTTT CTGTAACGTT CACCCTCTAC CTTAGCATCC 2461 CTTCCCTTTG CAAATAGTCC TCTTCCAACA ATAATAATGT CAGATCCTGT AGAGACGACA 2521 TCATCCACGG TTCTATACTG TTGACCCAAT GCGTCTCCCT TGTCATCTAA ACCCACACCC 2581 GGTGTCATAA TCAACCAATC GTAACCTTCA TCTCTTCCAC CCATGTCTCT TTGAGCAATA 2641 AACCCGATAA CAAAATCTTT GTCGCTCTTC GCAATGTCAA CAGTACCCTT AGTATATTCT 2701 CCAGTAGATA GCGAGCCCTT GCATGACAAT TCTGCTAACA TCAAAAGGCC TCTAGGTTCC 2761 TTTGTTACTT CTTCTGCCGC CTGCTTCAAA CCGCTAACAA TACCTGGGCC CAGCACACCG 2821 TGTGCATTCG TAATGTCTGC CCATTCTGCT ATTCTGTATA CACCCGCAGA GTACTGCAAT 2881 TTGACTGTAT TACCAATGTC AGCAAATTTT CTGTCTTCGA AGAGTAAAAA ATTGTACTTG 2941 GCGGATAATG CCTTTAGCGG CTTAACTGTG CCCTCCATGG AAAAATCAGT CAAGATATCC 3001 ACATGTGTTT TTAGCAAACA AATTTTCGGA CCTAATGCTT CAACTAACTC CAGTAATTCC 3061 TTGGTGGTAC GAACATCTAG AGAAGCACAC AAGTTTGTTT GCTTTTCGTG CATGATATTA 3121 AATAGCTTCG CAGCAACAGG ACTAGGATGA GTAGCAGCAC GTTCCTTATA TGTAGCTTTC 3181 GACATGATTT ATCTTCGTTT CCAGCAGGTT TTTGTTCTGT GCAGTTGGGT TAAGAATACT 3241 GCGCAATTTC ATGTTTCTTC AACACTACAT ATGCGTATAT ATACCAATCT AAGTCTGTGC 3301 TCCTTCCTTC GTTCTTCCTT CTGTTCGGAG ATTACCGAAT GAAAAAAACT TCAAGGAAAC 3361 CGGAATCAAG AAAAAGAATA AAAAAAAATG ATGAATTGAA AGCCTGCAGA GTGGGTGTGG 3421 TGTGGTGTGG GTGTGGTGTG TGTGTGGGTG GTCTGTGTGG GACAGCTGGC TCACATATAT 3481 ACAAATATTT ATACCGATTA ATATTTACGT TCCTCCCTCT CTCTAATTAT TCATTGATTT 3541 ATTCAAGAAT TAGGGTTATA ACAATAAATG GTTGGCGCAG GCAATTAATT TTTCTTTACT 3601 CTTCCAAACC CTCTGTTAAC GACAATCAAA TAACCTGATC TGCCAAGGAT CCATCATATC 3661 TGGCCTAGAA CAGTTTTTTT TTTTCGATTA TTTGTTCGTT CTTGTGGTGG TTACTCATTG 3721 GCAGAATCCC GAAAATCATG ATTAGTAGAT GAATGACTGA CTTTTTGGAT AAGCTGGCGC 3781 AAATTGAAAC ATGTGAAAAA AAAAAAAAAG GATTATAAAA GGTCAGCGAA GCACAGAACT 3841 CTGAGATAAG ACTACCTTTC TTTACCTAGG GGAGAATATT CGCAATTGAA GAGCTCAAAA 3901 GCAGGTAACT ATATAACAAG ACTAAGGCAA ACATGTCAGA CGGCACTCAA AAACTATGGG 3961 GTGGCAGATT CACTGGTGAA ACCGATCCTT TGATGCACCT TTACAATGCG TCTCTTCCGT 4021 ATGATTATAA GATGTATAAG GCAGATTTAG AAGGAACTAA AGTATACACA GCCGGCTTGC 4081 AGAAGTTGGG TCTTCTAACG GAGACAGAAT TGGCAAAGAT CCATGAAGGT TTGGCTGAAA 4141 TCAAAAAAGA ATGGGACGCT GACAAATTTG TCCGTCATCC AAACGACGAG GATATCCATA 4201 CTGCCAATGA AAGACGTCTT GGTGAACTAA TTGGCCGCGA TATTGCTGGT AAAGTCCACA 4261 CCGGTAGATC CCGTAATGAT CAAGTTGTTA CGGATTTGAG AATATACTGT CGTGACATTG 4321 TCAATGACAC CCTCTTTCCA GCTTTAAAGG GCTTGGTTGA AGTTCTAATT AAGAGGGCGG 4381 AAGGTGAGAT AGATGTCTTA ATGCCAGGCT ACACACATTT ACAAAGGGCA CAACCTATTA 4441 GATGGTCTCA TTGGCTCAGC TCTTATGCAA CATACTTCAC CGAAGATTAC AAGAGACTGG 4501 GTCAAATACT ACACAGATTG AATCAATCAC CACTGGGTGC GGGCGCTCTT GCTGGTCATC 4561 CTTACGGCAT TGATAGAGAA TTTTTGGCTG AAGGTTTGGG TTTCAATAGT GTAATTGGTA 4621 ACTCCTTGGT TGCTGTTTCT GATAGAGATT TCATCGTCGA GTTGATGTTT TGGGGAACTT 4681 TGTTCATGAA CCATATTTCT CGTTTTGCTG AAGATTTGAT TATATATTGT ACAGCAGAAT 4741 TTGGTTTCAT ACAGTTGAGC GACGCGTATT CAACAGGTTC TTCTTTAATG CCTCAGAAGA 4801 AGAATGCAGA CTCGTTAGAG TTGTTAAGAG GTAAATCGGG TAGAGTATTT GGTGATCTGA 4861 CAGGATTCTT GATGAGTTTG AAGGGTATCC CATCTACTTA TGATAAAGAC ATGCAAGAAG 4921 ACAAAGAGCC ACTATTCGAT TGCTTAACAA CTGTAGAGCA CTCGATGCTG ATTGCCACAG 4981 GTGTTATTTC TACCTTAACT GTAAATAAGG AAAAGATGGA AGCTGCTCTC ACGATGGATA 5041 TGCTAGCTAC GGACTTGGCA GATTACTTGG TCAGAAAGGG TGTTCCATTC AGAGAGACTC 5101 ATCACATATC TGGTGAGTGT GTGGCTACTG CTGAAAGACT TGGTCTAAGC GGTATTGATA 5161 AATTAACCTT GGAGCAGTAT CAAAAGATCG ATTCCAGATT CGGACAAGAT CTTTTTGAAA 5221 CTTTTAACTT TGAACAAAGC GTTGAAAGAC GAGATGCTAC TGGTGGAACG GCTAAATCTG 5281 CTGTATTGAA GCAATTGGAT AATTTGAAAT CCCAATTAAA TTAGAAGCTT GCGACGTTAT 5341 GCGCAAGAAT TTCATCAGGT CTGGTACTTC TAGGACTTCA TCAACCCTTC TTTAAATACT 5401 TATTTTGTTA TTAGTATTAT ATTTTCGAGA TTGTGCTATG TATATATATA CGTAGATAAG 5461 CAATTGTTAT CTAATCAAGG ATATTATTTG GATGATTTAG AAGATGACCG GCAAAAAAAC 5521 GAAATAATGC TGCTATATAC CTTGGCTAAT CTTCCTCTCA AGCGTTTCAG GGAAAGACGT 5581 GTGTGATGGT TGAATATAAG TGAAGCAAAT GGCCATGAGA CTAAATAACT AAAACGGCCG 5641 CAATAATACA CACTATTGTA ACCTCCCAAA GTCGTTAACC AACTTAGCAG TTGTCTTAGT 5701 TTATACCCAT TCGCACTCAT TATCATTTTG TAAACTGGAT AATGTAGGGC CTCGTGAATG 5761 TCTGAACCGG CCATTCTCAA AAATTTATAG TTCGATGGTT GTGACCCAAT CTGCAGTCGA 5821 CAACTAGGGT GGTATATAAA CCGTCAGGAC GGTCTGTACG TACTTCACCA AGCACTTCTT 5881 TGGTCAACAT ATCCTTGCTT AATTTCTTTA TGGACACAAT TTTATCTTGC GAGAATTTTT 5941 GTTTTACCAT GAATTGATTG GAGAAAACAC CGTTCTCTTC CACAACAACA CGCTCCTTTG 6001 GTACATTCAA TTGTTCAATC TAGAGTTCGG CTGTTTTAGC ATCTTGGCTA GCAATGAACA 6061 GAGAAGAAAC TCCGTTGTTC AAGAAGGCAA TGATTTCATC ATCGCTGAAT TTACCACTTG 6121 GCAAGACTAG TGCCACCAAT GGCCCCTCTC GGCATTACTC AGGCTCGAGC CATCCAAAAG 6181 TACCTGACCA ACAAGTGAAA CGTATTCCTT CTTACTATTC CATGAGGCCA GATCATCAAT 6241 TAACGGTAGA ATCGGCAAAA CCATTATTCA GAAAAAAAAT TTTGTAAACT ATTGTATTAC 6301 TATTACACAG CGCAGTTGTG CTATGATATT TTTATGTATG TACAACACAC ATCGAAGGTG 6361 AATATAACGT TCCATATCTA TTATATACAC AGTATACTAC TGTTCATAGT CATATCCTTT 6421 TCTTACCTTC TATATCGAAT GACTGATAAA AAAACGTGAG TCACTGTGCA TGGGTTTAGC 6481 AATTAACTAA CTAATTTACC GGAGTCACTA TTAGAATCAG TTCGACTGCC TAGAAGAACT 6541 GCTGGTTGTC AGGATTGTGA TGGGGGCATT CTGCTGTATT ATGACCCATC GTATCGCAAT 6601 GCTCACACCA CTGTTGTCTT CCTGCCGTGG TATCGACTGG TGCAGGGGGG TCGAAAATTG 6661 GCAACGATTC CACGGCTGTT TGTGCTTGAG CCTGTTCCAA CTGTTTGATT TTTTCATTAG 6721 CCTCTTCAAG TTTTTTCGTT AAGGATGCCA CCTCTTCCGA TGAGGAATCT TGTGGTTTTG 6781 TCGAAAATAG TTCCTTGCTC AAATTTTGGT ATTCTTTACT GAGCGAATCG TTATGCATTT 6841 TCAATTGTTC GCGTTCTTTA GCCCAC //