Table S4: Differentially Expressed Genes Between Genotypes, Within Clusters. Related to Figure 4 and S6.
Gene_Symbol,p_val,avg_logFC,pct.1,pct.2,p_val_adj,Cluster
mt-Cytb,1.84E-52,-0.675018586,0.763,0.965,3.68E-48,0
mt-Co3,1.81E-59,-0.640801917,0.901,0.992,3.62E-55,0
mt-Atp6,2.44E-57,-0.631006373,0.863,0.982,4.87E-53,0
mt-Co2,2.99E-46,-0.617924352,0.801,0.956,5.96E-42,0
mt-Nd2,2.04E-25,-0.55828026,0.558,0.819,4.08E-21,0
mt-Nd1,1.41E-24,-0.536066094,0.541,0.81,2.81E-20,0
mt-Co1,1.52E-33,-0.475742253,0.839,0.973,3.04E-29,0
mt-Nd4,1.80E-20,-0.444698756,0.646,0.865,3.60E-16,0
mt-Nd3,1.23E-06,-0.383398878,0.298,0.433,0.024563011,0
Tex261,4.75E-11,0.265239661,0.12,0.035,9.49E-07,0
Cel,6.93E-15,0.511258141,0.143,0.039,1.39E-10,0
Cpa2,3.42E-17,0.511532248,0.135,0.03,6.82E-13,0
Pnliprp1,2.11E-27,0.688349322,0.193,0.039,4.22E-23,0
Gcg,5.72E-28,0.76142655,0.924,0.921,1.14E-23,0
Reg1,8.83E-33,0.896186161,0.354,0.11,1.76E-28,0
Rnase1,1.30E-46,1.070948903,0.398,0.107,2.60E-42,0
Cela3b,1.02E-53,1.13603293,0.547,0.189,2.03E-49,0
Zg16,7.35E-62,1.184176182,0.374,0.068,1.47E-57,0
Sycn,8.93E-58,1.186407318,0.444,0.107,1.78E-53,0
2210010C04Rik,2.99E-61,1.187671251,0.585,0.192,5.97E-57,0
Cpa1,2.58E-58,1.221669662,0.462,0.119,5.14E-54,0
Cpb1,1.88E-76,1.27563325,0.515,0.113,3.75E-72,0
Ctrl,3.96E-71,1.318003961,0.427,0.08,7.92E-67,0
Clps,1.05E-79,1.32269432,0.711,0.259,2.10E-75,0
Cela1,5.62E-93,1.412560384,0.713,0.223,1.12E-88,0
Try5,6.04E-95,1.467487981,0.553,0.106,1.21E-90,0
Pnlip,2.23E-90,1.490659112,0.62,0.159,4.46E-86,0
Try4,2.78E-94,1.522326686,0.582,0.124,5.56E-90,0
Cela2a,8.76E-89,1.536026257,0.64,0.177,1.75E-84,0
Prss2,3.06E-105,1.586172392,0.804,0.293,6.11E-101,0
Ctrb1,1.40E-123,1.676655186,0.886,0.343,2.79E-119,0
Fosb,1.76E-17,-0.324252244,0.908,0.931,3.52E-13,1
Jun,6.27E-14,-0.276437713,0.682,0.795,1.25E-09,1
Mt1,1.58E-16,0.359164738,1,0.997,3.15E-12,1
mt-Co3,5.48E-20,-0.470805746,0.978,0.988,1.09E-15,2
mt-Cytb,5.03E-12,-0.409142411,0.89,0.96,1.00E-07,2
mt-Nd2,1.01E-07,-0.39560627,0.676,0.82,0.002026019,2
mt-Atp6,6.95E-13,-0.380400024,0.929,0.984,1.39E-08,2
mt-Co2,5.38E-10,-0.33635373,0.885,0.967,1.07E-05,2
Cd2ap,9.21E-11,0.251133746,0.214,0.064,1.84E-06,2
Golga3,4.03E-17,0.252060841,0.143,0.018,8.04E-13,2
Prkacb,8.69E-08,0.252169106,0.352,0.158,0.001735428,2
Eif3a,4.05E-13,0.252411918,0.319,0.105,8.10E-09,2
Ctdsp2,1.98E-12,0.253147584,0.132,0.023,3.95E-08,2
Ccnd1,1.63E-11,0.255339277,0.269,0.088,3.26E-07,2
Gpr45,6.84E-11,0.25545977,0.198,0.056,1.37E-06,2
Pnkd,2.28E-08,0.255577033,0.17,0.053,0.000456158,2
Knop1,8.99E-11,0.257112949,0.11,0.019,1.80E-06,2
Deptor,8.12E-20,0.258009938,0.231,0.042,1.62E-15,2
Cltc,3.70E-12,0.259303635,0.346,0.124,7.39E-08,2
Pax6,5.55E-15,0.260537804,0.33,0.101,1.11E-10,2
Cyfip2,1.01E-12,0.260654379,0.253,0.073,2.02E-08,2
Klf9,3.89E-11,0.261177952,0.247,0.078,7.77E-07,2
Mmgt2,9.41E-18,0.262168361,0.137,0.016,1.88E-13,2
Smc6,8.02E-09,0.264485022,0.148,0.04,0.000160265,2
Psma7,4.47E-08,0.266429605,0.363,0.167,0.000893657,2
Snrpc,2.22E-07,0.270168062,0.143,0.044,0.004424579,2
Usp9x,2.57E-10,0.270783849,0.363,0.146,5.14E-06,2
Wnt4,2.85E-13,0.274204124,0.368,0.13,5.69E-09,2
Zrsr2,4.07E-12,0.276229145,0.159,0.034,8.12E-08,2
Cdkn1a,9.79E-16,0.283990893,0.165,0.028,1.96E-11,2
Ascc3,3.06E-19,0.286592317,0.236,0.046,6.10E-15,2
Tmem234,6.39E-11,0.295728414,0.258,0.085,1.28E-06,2
Htt,3.44E-14,0.299779649,0.115,0.015,6.88E-10,2
Ddx3x,3.61E-11,0.302973716,0.341,0.129,7.21E-07,2
Selenop,1.01E-07,0.313251072,0.39,0.188,0.002023793,2
Ubxn2a,4.61E-15,0.315387207,0.22,0.051,9.21E-11,2
Ddx5,2.32E-06,0.31609335,0.632,0.407,0.046311675,2
Rbbp6,7.36E-15,0.318201012,0.291,0.084,1.47E-10,2
Ide,1.21E-14,0.346925492,0.132,0.019,2.42E-10,2
Galnt1,1.32E-23,0.347259526,0.181,0.02,2.64E-19,2
Specc1l,2.26E-14,0.34851458,0.148,0.025,4.52E-10,2
Phactr1,1.35E-18,0.358533331,0.308,0.078,2.70E-14,2
Dnajc21,6.48E-13,0.359692846,0.214,0.056,1.29E-08,2
Ncor1,7.25E-13,0.367347788,0.291,0.092,1.45E-08,2
Ddx6,2.01E-14,0.369190082,0.313,0.098,4.02E-10,2
Jak1,1.44E-24,0.379480795,0.258,0.042,2.88E-20,2
Ctrl,3.08E-10,0.384570297,0.121,0.025,6.14E-06,2
Pmepa1,8.99E-15,0.387608292,0.148,0.024,1.80E-10,2
Rnase1,1.72E-10,0.440439592,0.115,0.022,3.44E-06,2
Meg3,5.76E-08,0.487935223,0.467,0.258,0.001151245,2
Reg1,2.98E-14,0.5380378,0.159,0.03,5.94E-10,2
Neat1,2.05E-10,0.648401507,0.407,0.182,4.10E-06,2
Cela3b,3.50E-19,0.668554545,0.297,0.075,6.99E-15,2
Cpb1,1.69E-19,0.674629605,0.214,0.04,3.37E-15,2
Sycn,3.70E-24,0.761172222,0.214,0.03,7.38E-20,2
2210010C04Rik,7.63E-23,0.78933654,0.302,0.068,1.52E-18,2
Cela2a,9.48E-22,0.822026478,0.253,0.05,1.89E-17,2
Cpa1,2.68E-22,0.822121966,0.198,0.028,5.35E-18,2
Try5,9.11E-36,0.872103244,0.286,0.034,1.82E-31,2
Try4,1.47E-34,0.933765252,0.258,0.028,2.93E-30,2
Clps,1.22E-22,1.025029464,0.363,0.102,2.44E-18,2
Ctrb1,3.05E-22,1.050623564,0.527,0.203,6.09E-18,2
Pnlip,6.58E-39,1.053960525,0.313,0.039,1.31E-34,2
Cela1,1.86E-27,1.078581199,0.412,0.11,3.71E-23,2
Prss2,5.45E-26,1.141304011,0.451,0.139,1.09E-21,2
mt-Co3,5.76E-58,-0.683195932,0.934,0.984,1.15E-53,3
mt-Co2,3.30E-42,-0.640907571,0.83,0.951,6.59E-38,3
mt-Cytb,2.18E-42,-0.627594993,0.845,0.962,4.36E-38,3
mt-Atp6,1.03E-44,-0.604606469,0.923,0.972,2.05E-40,3
mt-Nd2,6.32E-21,-0.584174541,0.651,0.798,1.26E-16,3
mt-Nd4,8.02E-24,-0.533506524,0.691,0.859,1.60E-19,3
mt-Co1,2.22E-33,-0.528606898,0.889,0.957,4.44E-29,3
mt-Nd1,3.08E-19,-0.525284676,0.602,0.765,6.15E-15,3
mt-Nd3,1.08E-10,-0.511956894,0.311,0.464,2.15E-06,3
Pax6,5.19E-07,0.250833077,0.221,0.104,0.010361742,3
Tm2d2,2.37E-06,0.262081439,0.145,0.057,0.047303932,3
Setd3,2.28E-07,0.271565428,0.138,0.047,0.004555677,3
Pnliprp2,8.71E-11,0.333447094,0.136,0.028,1.74E-06,3
Nisch,1.94E-07,0.338786721,0.209,0.092,0.003880867,3
Tff2,1.08E-07,0.344316529,0.202,0.087,0.002165811,3
C2cd4b,5.49E-07,0.348899691,0.187,0.082,0.010958678,3
Pnliprp1,7.78E-13,0.39020328,0.372,0.163,1.55E-08,3
Pla2g1b,7.91E-12,0.483194542,0.181,0.047,1.58E-07,3
Klk1,3.33E-13,0.530706423,0.191,0.047,6.65E-09,3
Reg1,1.49E-20,0.569340012,0.572,0.283,2.97E-16,3
Cpa2,4.78E-16,0.570219213,0.253,0.07,9.55E-12,3
Clps,5.41E-51,0.676595613,0.894,0.471,1.08E-46,3
Cel,1.77E-28,0.783146874,0.436,0.125,3.53E-24,3
Cela1,2.97E-64,0.832787208,0.891,0.417,5.94E-60,3
Sycn,1.27E-43,0.83506174,0.768,0.322,2.54E-39,3
Reg2,1.17E-20,0.838319657,0.204,0.026,2.34E-16,3
Cpb1,7.98E-59,0.846843798,0.811,0.311,1.59E-54,3
Zg16,2.92E-40,0.893175979,0.596,0.191,5.82E-36,3
2210010C04Rik,3.56E-62,0.908465335,0.889,0.403,7.11E-58,3
Cela2a,1.84E-74,0.918348104,0.926,0.443,3.67E-70,3
Cela3b,1.05E-67,0.97431323,0.902,0.403,2.09E-63,3
Cpa1,5.68E-49,1.005042005,0.768,0.329,1.13E-44,3
Gcg,3.82E-72,1.043458796,0.994,0.897,7.62E-68,3
Rnase1,6.59E-47,1.047977891,0.698,0.25,1.32E-42,3
Prss2,2.95E-97,1.074889266,0.987,0.534,5.88E-93,3
Try5,2.78E-81,1.177591733,0.874,0.315,5.54E-77,3
Ctrl,2.12E-62,1.181936775,0.762,0.252,4.24E-58,3
Ctrb1,6.84E-110,1.290793899,0.991,0.603,1.37E-105,3
Pnlip,6.24E-92,1.32220839,0.913,0.348,1.25E-87,3
Try4,6.86E-112,1.618565997,0.934,0.297,1.37E-107,3
Ctrb1,1.64E-08,0.257007449,0.744,0.53,0.000326864,5
Try5,3.93E-10,0.269502917,0.475,0.246,7.84E-06,5
Gcg,4.32E-32,0.251924274,1,0.971,8.62E-28,6
Try5,1.57E-18,0.285923997,0.634,0.338,3.14E-14,6
mt-Nd4l,2.04E-25,0.292587781,0.988,0.928,4.07E-21,6
Nupr1,2.13E-06,0.296017511,0.818,0.68,0.042516545,6
Ctrb1,8.65E-18,0.352211777,0.832,0.576,1.73E-13,6
Mt2,6.35E-20,0.432506968,0.988,0.932,1.27E-15,6
Mt1,9.26E-28,0.583717554,0.998,0.986,1.85E-23,6
mt-Co3,5.08E-26,-0.257126587,1,1,1.02E-21,7
Ctrb1,2.07E-31,0.275146886,0.9,0.549,4.13E-27,7
Mt1,3.09E-08,0.355940659,0.997,0.997,0.000616554,7
Mt2,1.70E-08,0.256393879,0.997,0.973,0.000339694,8
Mt1,1.03E-08,0.292112058,1,0.997,0.000205965,8
Depp1,4.33E-08,-1.065260997,0.247,0.432,0.000865092,9
Ier3,5.78E-09,-0.580157945,0.973,0.993,0.000115496,9
Tiparp,1.72E-07,-0.496680182,0.803,0.871,0.003426237,9
Bhlhe40,6.02E-08,-0.388242495,0.861,0.915,0.00120307,9
Pnrc1,2.90E-07,-0.36730484,0.903,0.956,0.005783772,9
Tubb5,2.29E-06,-0.267418493,0.795,0.886,0.045834085,9
Tra2a,1.28E-06,-0.256930563,0.672,0.779,0.025560494,9
Zyx,3.15E-07,0.271960605,0.637,0.413,0.006287019,9
Tm4sf1,1.06E-08,0.357870386,0.988,0.989,0.000210728,9
Try4,3.41E-07,0.416346592,0.39,0.196,0.006819809,9
Try5,6.85E-09,0.502042266,0.456,0.225,0.000136818,9
mt-Co2,1.34E-07,-0.519500107,0.841,0.847,0.002684821,10
mt-Co3,6.02E-08,-0.499653867,0.939,0.911,0.001201988,10
Ppy,1.80E-12,-0.474186987,0.742,0.887,3.60E-08,10
mt-Atp6,1.27E-07,-0.473269445,0.909,0.919,0.002533233,10
mt-Cytb,5.24E-07,-0.466516114,0.825,0.831,0.010465571,10
Ttr,5.30E-12,0.474526629,0.957,0.782,1.06E-07,10
Try4,3.11E-21,0.747935269,0.975,0.718,6.21E-17,10
Pyy,5.16E-10,0.757831227,0.757,0.484,1.03E-05,10
Reg2,6.17E-10,1.318365755,0.329,0.048,1.23E-05,10
Gcg,5.51E-51,1.440685848,1,0.823,1.10E-46,10
2210010C04Rik,4.65E-08,0.294681009,0.567,0.302,0.000929507,11
Zg16,1.56E-09,0.347985278,0.399,0.135,3.12E-05,11
Reg1,8.06E-09,0.433757748,0.438,0.172,0.000160977,11
Pnlip,4.67E-10,0.436531905,0.537,0.242,9.32E-06,11
Ctrl,5.96E-12,0.47790492,0.463,0.153,1.19E-07,11
Sycn,4.60E-09,0.487921663,0.542,0.256,9.19E-05,11
Cpb1,2.05E-11,0.531266514,0.498,0.191,4.10E-07,11
Cpa1,2.77E-10,0.550499941,0.458,0.186,5.53E-06,11
Try4,2.52E-15,0.606452128,0.562,0.2,5.04E-11,11
Try5,2.79E-18,0.631703793,0.616,0.195,5.57E-14,11
Prss2,5.97E-13,0.79735723,0.739,0.409,1.19E-08,11
Ctrb1,4.41E-15,0.84100067,0.798,0.442,8.81E-11,11
Ppy,1.70E-08,-0.456213519,0.771,0.862,0.000339288,12
Ttr,4.22E-07,0.388793158,0.949,0.787,0.008427466,12
Try4,1.16E-18,0.685858122,0.99,0.809,2.32E-14,12
Pyy,8.57E-11,0.785138713,0.822,0.415,1.71E-06,12
Gcg,1.04E-38,1.377466467,1,0.777,2.08E-34,12
Try5,1.86E-09,0.471958896,0.507,0.226,3.72E-05,13
Ctrb1,1.32E-06,0.491974937,0.728,0.505,0.026291763,13
mt-Co3,9.84E-15,-0.682703447,0.923,0.939,1.97E-10,14
mt-Atp6,2.06E-11,-0.635720472,0.911,0.929,4.11E-07,14
mt-Nd1,9.60E-08,-0.622509492,0.524,0.737,0.001918442,14
mt-Nd2,2.07E-06,-0.578716548,0.605,0.727,0.041328249,14
mt-Cytb,5.80E-08,-0.560805552,0.838,0.899,0.001158485,14
mt-Co1,4.19E-08,-0.519126093,0.871,0.909,0.000837515,14
mt-Co2,2.08E-08,-0.512234624,0.845,0.869,0.00041559,14
Ctrl,7.55E-07,0.336658837,0.882,0.576,0.015089079,14
Try5,7.83E-10,0.408100064,0.974,0.616,1.56E-05,14
Pnlip,8.96E-12,0.441206451,0.974,0.636,1.79E-07,14
Ctrb1,1.01E-13,0.530041773,1,0.869,2.02E-09,14
Sycn,1.67E-09,0.589032094,0.889,0.586,3.33E-05,14
Gcg,1.47E-32,1.168209457,1,0.869,2.94E-28,14
Try4,1.13E-28,1.236906326,0.974,0.505,2.25E-24,14
Reg2,1.98E-09,1.558763127,0.321,0.02,3.96E-05,14
Hspa1a,2.70E-07,-1.597426645,0.023,0.198,0.005390554,15
Hspa8,4.91E-07,-0.576446852,0.931,0.975,0.009807728,15
Uba52,1.53E-08,-0.38322202,0.8,0.942,0.000305082,15
Pnlip,9.94E-07,0.486828778,0.526,0.248,0.019845031,15
Try4,2.83E-08,0.633214434,0.469,0.174,0.000564658,15
Prss2,5.21E-07,0.688422257,0.663,0.405,0.010404906,15
Try5,2.13E-08,0.700618321,0.503,0.215,0.000425175,15
Ctrb1,3.28E-07,0.711853912,0.726,0.479,0.006554332,15
Cpa1,1.73E-11,-0.513825401,1,1,3.46E-07,16
Cela2a,1.39E-11,-0.49526768,1,1,2.78E-07,16
Cel,5.49E-10,-0.493054859,0.98,1,1.10E-05,16
Ctrl,3.41E-12,-0.491198839,0.993,1,6.82E-08,16
Pdia2,9.58E-08,-0.489022778,0.571,0.789,0.001913049,16
Pnlip,8.60E-10,-0.479450336,1,1,1.72E-05,16
Cpb1,1.02E-09,-0.471805521,1,1,2.03E-05,16
Cpa2,2.04E-07,-0.359129798,0.973,0.992,0.004074435,16
Cela1,3.51E-07,-0.340221644,1,1,0.007014603,16
Pnliprp1,4.32E-08,-0.317727601,0.98,0.992,0.000863067,16
Prss2,1.67E-06,-0.26854036,1,1,0.033319322,16
Reg2,4.81E-10,0.953864294,0.694,0.293,9.61E-06,16
Ttr,8.77E-07,0.976868236,0.653,0.436,0.0175199,16
Pyy,9.73E-09,1.014281891,0.517,0.211,0.000194304,16
Gcg,2.43E-10,2.24520053,0.823,0.624,4.85E-06,16
Prss2,2.17E-08,0.605378516,0.682,0.354,0.000433889,17
Ctrb1,1.79E-08,0.674220741,0.762,0.472,0.00035831,17
Try5,8.73E-09,0.741599717,0.55,0.205,0.000174318,17
Cela3b,6.34E-07,0.846050052,0.49,0.205,0.012667174,17
Try4,1.60E-07,1.110606012,0.503,0.22,0.003187828,17
Hspa5,9.33E-11,-0.345048951,1,0.986,1.86E-06,18
Rps3a1,2.22E-08,0.260753946,0.992,0.959,0.000444097,18
Rpl24,3.08E-07,0.262084807,0.983,0.891,0.006146203,18
Cela2a,6.53E-10,-0.835779681,1,1,1.30E-05,20
Cela1,1.06E-08,-0.708775051,0.986,0.976,0.000211699,20
Prss2,1.32E-08,-0.592113369,1,1,0.000263093,20
Gcg,1.60E-27,0.317406509,0.993,0.744,3.20E-23,20
Hsp90ab1,8.15E-07,0.568319336,0.604,0.195,0.016276409,20
Reg2,3.91E-07,1.200469928,0.417,0.098,0.007803341,20
mt-Co3,2.40E-09,-0.574818495,0.978,0.928,4.80E-05,21
mt-Cytb,5.03E-07,-0.517259276,0.873,0.928,0.010042772,21
mt-Atp6,5.35E-07,-0.466482877,0.955,0.976,0.010676857,21
Pnlip,1.10E-06,0.361619523,1,0.952,0.021930912,21
Try4,8.89E-21,1.056998501,1,0.759,1.78E-16,21
Reg2,3.76E-07,1.438530251,0.373,0.072,0.007518915,21
Gcg,2.37E-25,1.499660506,1,0.88,4.73E-21,21
Fosb,8.60E-08,-0.346930703,0.908,0.95,0.001718321,22
Try5,6.56E-11,0.305048422,0.663,0.22,1.31E-06,22
Prss2,6.14E-07,0.332271941,0.776,0.51,0.012255243,22
Ctrb1,2.11E-09,0.415981551,0.816,0.48,4.21E-05,22
Depp1,3.96E-07,-1.026557387,0.374,0.651,0.007908634,23
Gadd45b,2.98E-07,-0.640481979,0.963,0.988,0.00595971,23
Ier3,5.73E-07,-0.582209907,1,1,0.011452331,23
Junb,1.26E-07,-0.56042043,1,1,0.00250843,23
Ppp1r15a,1.06E-06,-0.520300254,0.869,0.977,0.021242161,23
Try5,5.12E-07,1.795907096,0.596,0.093,0.010223701,26