Virus,Target gene,Product Size (bp),"Position
 (vs reference)",Primer sequence
Murine astrovirus 2,RdRP,620,"2660-3280
(vs MF175073)",F: GGCACCCTATATAAAAGAGTTTGC
,,,,R: GTCTCAAACTCCACAAACTTTTCAATA
,Capsid 1,430,"4261-4695
(vs MF175073)",F: ACGCCTGGGAAGCATGGGA
,,,,R: ACGATCATCCAGACCGTGTTTC
,Capsid 2,590,"5395-5980
(vs MF175073)",F: CAAGCAGTGCACTATGAGTGG
,,,,R: GTTTCATAGCCTGAACAGCAAGC
Rat astrovirus,RdRP 1,532,"3191-3723
(vs KT946731)",F: GGGAACCCTACCTAAAGGCA
,,,,R: ATGTTGTTATCAATGGTTGTTGAGATT
,RdRP 2,441,"3669-4110
(vs KT946731)",F: GCAAAGGAAGGGTAACCCCT
,,,,R: GATGGTGGATGGTTGTGCATTA
Murine astrovirus 1,RdRP,80,"3892-3971
(vs JX544743)",F: TACATCGAGCGGGTGGTCGC
,,,,R: GTGTCACTAACGCGCACCTTTTCA
Murine hepatitis virus,Orf1a,174,"4-177
(vs AF029248.1)",F: AAGAGTGATTGGCGTCCGTAC
,,,,R: ATGGACACGTCACTGGCAGAG
Pan-arenavirus,L segment,395,"3527-3921
(vs LVU73034)",R: AGAATYAGTGAAAGGGARAGYAAYTC
,,,,F: CACATCATTGGTCCCCATTTACTRTGATC