sample_name,biosample_accession,cohousing_set.up,host_genotype,library_ID,sequencing_description,library_strategy,library_source,library_selection,library_layout,platform,instrument_model,design_description,filetype,filename,filename2,filename3,filename4
A1_1-LIV,SAMN22605057,"Cohousing set-up ""A1""",B6,A1_1-LIV_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_1-LIV_MAstv2_capsid_2_repA_R1.fastq.gz,A1_1-LIV_MAstv2_capsid_2_repA_R2.fastq.gz,,
A1_1-LIV,SAMN22605057,"Cohousing set-up ""A1""",B6,A1_1-LIV_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_1-LIV_MAstv2_capsid_2_repB_R1.fastq.gz,A1_1-LIV_MAstv2_capsid_2_repB_R2.fastq.gz,,
A1_1-LIV,SAMN22605057,"Cohousing set-up ""A1""",B6,A1_1-LIV_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_1-LIV_MAstv2_rdrp_repA_R1.fastq.gz,A1_1-LIV_MAstv2_rdrp_repA_R2.fastq.gz,,
A1_1-LIV,SAMN22605057,"Cohousing set-up ""A1""",B6,A1_1-LIV_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_1-LIV_MAstv2_rdrp_repB_R1.fastq.gz,A1_1-LIV_MAstv2_rdrp_repB_R2.fastq.gz,,
A1_1-LIV,SAMN22605057,"Cohousing set-up ""A1""",B6,A1_1-LIV_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_1-LIV_mRNAseq_R1.fastq.gz,A1_1-LIV_mRNAseq_R2.fastq.gz,,
A1_1-SI,SAMN22605058,"Cohousing set-up ""A1""",B6,A1_1-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_1-SI_MAstv2_capsid_2_repA_R1.fastq.gz,A1_1-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
A1_1-SI,SAMN22605058,"Cohousing set-up ""A1""",B6,A1_1-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_1-SI_MAstv2_capsid_2_repB_R1.fastq.gz,A1_1-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
A1_1-SI,SAMN22605058,"Cohousing set-up ""A1""",B6,A1_1-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_1-SI_MAstv2_rdrp_repA_R1.fastq.gz,A1_1-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
A1_1-SI,SAMN22605058,"Cohousing set-up ""A1""",B6,A1_1-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_1-SI_MAstv2_rdrp_repB_R1.fastq.gz,A1_1-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
A1_1-SI,SAMN22605058,"Cohousing set-up ""A1""",B6,A1_1-SI_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_1-SI_mRNAseq_R1.fastq.gz,A1_1-SI_mRNAseq_R2.fastq.gz,,
A1_1-SI_content,SAMN22605059,"Cohousing set-up ""A1""",B6,A1_1-SI_content_16S,16S sequencing of SI contents from B6 mouse cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A1_1-SI_content_16S_R1.fastq.gz,A1_1-SI_content_16S_R2.fastq.gz,,
A1_1-SLN,SAMN22605060,"Cohousing set-up ""A1""",B6,A1_1-SLN_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_1-SLN_mRNAseq_R1.fastq.gz,A1_1-SLN_mRNAseq_R2.fastq.gz,,
A1_2-LIV,SAMN22605061,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-LIV_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_2-LIV_MAstv2_capsid_2_repA_R1.fastq.gz,A1_2-LIV_MAstv2_capsid_2_repA_R2.fastq.gz,,
A1_2-LIV,SAMN22605061,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-LIV_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_2-LIV_MAstv2_capsid_2_repB_R1.fastq.gz,A1_2-LIV_MAstv2_capsid_2_repB_R2.fastq.gz,,
A1_2-LIV,SAMN22605061,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-LIV_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_2-LIV_MAstv2_rdrp_repA_R1.fastq.gz,A1_2-LIV_MAstv2_rdrp_repA_R2.fastq.gz,,
A1_2-LIV,SAMN22605061,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-LIV_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_2-LIV_MAstv2_rdrp_repB_R1.fastq.gz,A1_2-LIV_MAstv2_rdrp_repB_R2.fastq.gz,,
A1_2-LIV,SAMN22605061,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-LIV_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_2-LIV_mRNAseq_R1.fastq.gz,A1_2-LIV_mRNAseq_R2.fastq.gz,,
A1_2-SI,SAMN22605062,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_2-SI_MAstv2_capsid_2_repA_R1.fastq.gz,A1_2-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
A1_2-SI,SAMN22605062,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_2-SI_MAstv2_capsid_2_repB_R1.fastq.gz,A1_2-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
A1_2-SI,SAMN22605062,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_2-SI_MAstv2_rdrp_repA_R1.fastq.gz,A1_2-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
A1_2-SI,SAMN22605062,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_2-SI_MAstv2_rdrp_repB_R1.fastq.gz,A1_2-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
A1_2-SI,SAMN22605062,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-SI_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_2-SI_mRNAseq_R1.fastq.gz,A1_2-SI_mRNAseq_R2.fastq.gz,,
A1_2-SI_content,SAMN22605063,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-SI_content_16S,16S sequencing of SI contents from IFNAR-/- mouse cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A1_2-SI_content_16S_R1.fastq.gz,A1_2-SI_content_16S_R2.fastq.gz,,
A1_2-SLN,SAMN22605064,"Cohousing set-up ""A1""",IFNAR-/-,A1_2-SLN_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_2-SLN_mRNAseq_R1.fastq.gz,A1_2-SLN_mRNAseq_R2.fastq.gz,,
A1_3-LIV,SAMN22605065,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-LIV_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_3-LIV_MAstv2_capsid_2_repA_R1.fastq.gz,A1_3-LIV_MAstv2_capsid_2_repA_R2.fastq.gz,,
A1_3-LIV,SAMN22605065,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-LIV_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_3-LIV_MAstv2_capsid_2_repB_R1.fastq.gz,A1_3-LIV_MAstv2_capsid_2_repB_R2.fastq.gz,,
A1_3-LIV,SAMN22605065,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-LIV_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_3-LIV_MAstv2_rdrp_repA_R1.fastq.gz,A1_3-LIV_MAstv2_rdrp_repA_R2.fastq.gz,,
A1_3-LIV,SAMN22605065,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-LIV_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_3-LIV_MAstv2_rdrp_repB_R1.fastq.gz,A1_3-LIV_MAstv2_rdrp_repB_R2.fastq.gz,,
A1_3-LIV,SAMN22605065,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-LIV_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_3-LIV_mRNAseq_R1.fastq.gz,A1_3-LIV_mRNAseq_R2.fastq.gz,,
A1_3-SI,SAMN22605066,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_3-SI_MAstv2_capsid_2_repA_R1.fastq.gz,A1_3-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
A1_3-SI,SAMN22605066,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_3-SI_MAstv2_capsid_2_repB_R1.fastq.gz,A1_3-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
A1_3-SI,SAMN22605066,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_3-SI_MAstv2_rdrp_repA_R1.fastq.gz,A1_3-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
A1_3-SI,SAMN22605066,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_3-SI_MAstv2_rdrp_repB_R1.fastq.gz,A1_3-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
A1_3-SI,SAMN22605066,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-SI_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_3-SI_mRNAseq_R1.fastq.gz,A1_3-SI_mRNAseq_R2.fastq.gz,,
A1_3-SI_content,SAMN22605067,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-SI_content_16S,16S sequencing of SI contents from IFNLR-/- mouse cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A1_3-SI_content_16S_R1.fastq.gz,A1_3-SI_content_16S_R2.fastq.gz,,
A1_3-SLN,SAMN22605068,"Cohousing set-up ""A1""",IFNLR-/-,A1_3-SLN_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_3-SLN_mRNAseq_R1.fastq.gz,A1_3-SLN_mRNAseq_R2.fastq.gz,,
A1_4-LIV,SAMN22605069,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-LIV_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_4-LIV_MAstv2_capsid_2_repA_R1.fastq.gz,A1_4-LIV_MAstv2_capsid_2_repA_R2.fastq.gz,,
A1_4-LIV,SAMN22605069,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-LIV_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_4-LIV_MAstv2_capsid_2_repB_R1.fastq.gz,A1_4-LIV_MAstv2_capsid_2_repB_R2.fastq.gz,,
A1_4-LIV,SAMN22605069,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-LIV_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_4-LIV_MAstv2_rdrp_repA_R1.fastq.gz,A1_4-LIV_MAstv2_rdrp_repA_R2.fastq.gz,,
A1_4-LIV,SAMN22605069,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-LIV_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_4-LIV_MAstv2_rdrp_repB_R1.fastq.gz,A1_4-LIV_MAstv2_rdrp_repB_R2.fastq.gz,,
A1_4-LIV,SAMN22605069,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-LIV_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_4-LIV_mRNAseq_R1.fastq.gz,A1_4-LIV_mRNAseq_R2.fastq.gz,,
A1_4-SI,SAMN22605070,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_4-SI_MAstv2_capsid_2_repA_R1.fastq.gz,A1_4-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
A1_4-SI,SAMN22605070,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_4-SI_MAstv2_capsid_2_repB_R1.fastq.gz,A1_4-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
A1_4-SI,SAMN22605070,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_4-SI_MAstv2_rdrp_repA_R1.fastq.gz,A1_4-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
A1_4-SI,SAMN22605070,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused  with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_4-SI_MAstv2_rdrp_repB_R1.fastq.gz,A1_4-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
A1_4-SI,SAMN22605070,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-SI_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_4-SI_mRNAseq_R1.fastq.gz,A1_4-SI_mRNAseq_R2.fastq.gz,,
A1_4-SI_content,SAMN22605071,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-SI_content_16S,16S sequencing of SI contents from IFNLAR-/- mouse cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A1_4-SI_content_16S_R1.fastq.gz,A1_4-SI_content_16S_R2.fastq.gz,,
A1_4-SLN,SAMN22605072,"Cohousing set-up ""A1""",IFNLAR-/-,A1_4-SLN_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_4-SLN_mRNAseq_R1.fastq.gz,A1_4-SLN_mRNAseq_R2.fastq.gz,,
A1_5-LIV,SAMN22605073,"Cohousing set-up ""A1""",Pet store A,A1_5-LIV_mRNAseq,mRNAseq of outbred mouse from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_5-LIV_mRNAseq_R1.fastq.gz,A1_5-LIV_mRNAseq_R2.fastq.gz,,
A1_5-SI,SAMN22605074,"Cohousing set-up ""A1""",Pet store A,A1_5-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store mouse A: small intestine,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_5-SI_MAstv2_capsid_2_repA_R1.fastq.gz,A1_5-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
A1_5-SI,SAMN22605074,"Cohousing set-up ""A1""",Pet store A,A1_5-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store mouse A: small intestine,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_5-SI_MAstv2_capsid_2_repB_R1.fastq.gz,A1_5-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
A1_5-SI,SAMN22605074,"Cohousing set-up ""A1""",Pet store A,A1_5-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store mouse A: small intestine,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_5-SI_MAstv2_rdrp_repA_R1.fastq.gz,A1_5-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
A1_5-SI,SAMN22605074,"Cohousing set-up ""A1""",Pet store A,A1_5-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store mouse A: small intestine,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_5-SI_MAstv2_rdrp_repB_R1.fastq.gz,A1_5-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
A1_5-SI,SAMN22605074,"Cohousing set-up ""A1""",Pet store A,A1_5-SI_mRNAseq,mRNAseq of outbred mouse from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_5-SI_mRNAseq_R1.fastq.gz,A1_5-SI_mRNAseq_R2.fastq.gz,,
A1_5-SI_content,SAMN22605075,"Cohousing set-up ""A1""",Pet store A,A1_5-SI_content_16S,16S sequencing of SI contents from outbred mouse from pet store A,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A1_5-SI_content_16S_R1.fastq.gz,A1_5-SI_content_16S_R2.fastq.gz,,
A1_5-SLN,SAMN22605076,"Cohousing set-up ""A1""",Pet store A,A1_5-SLN_mRNAseq,mRNAseq of outbred mouse from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_5-SLN_mRNAseq_R1.fastq.gz,A1_5-SLN_mRNAseq_R2.fastq.gz,,
A1_6-LIV,SAMN22605077,"Cohousing set-up ""A1""",Pet store B,A1_6-LIV_mRNAseq,mRNAseq of outbred mouse from pet store B: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_6-LIV_mRNAseq_R1.fastq.gz,A1_6-LIV_mRNAseq_R2.fastq.gz,,
A1_6-SI,SAMN22605078,"Cohousing set-up ""A1""",Pet store B,A1_6-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store mouse B: small intestine,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_6-SI_MAstv2_capsid_2_repA_R1.fastq.gz,A1_6-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
A1_6-SI,SAMN22605078,"Cohousing set-up ""A1""",Pet store B,A1_6-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store mouse B: small intestine,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A1_6-SI_MAstv2_capsid_2_repB_R1.fastq.gz,A1_6-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
A1_6-SI,SAMN22605078,"Cohousing set-up ""A1""",Pet store B,A1_6-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store mouse B: small intestine,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_6-SI_MAstv2_rdrp_repA_R1.fastq.gz,A1_6-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
A1_6-SI,SAMN22605078,"Cohousing set-up ""A1""",Pet store B,A1_6-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store mouse B: small intestine,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A1_6-SI_MAstv2_rdrp_repB_R1.fastq.gz,A1_6-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
A1_6-SI,SAMN22605078,"Cohousing set-up ""A1""",Pet store B,A1_6-SI_mRNAseq,mRNAseq of outbred mouse from pet store B: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_6-SI_mRNAseq_R1.fastq.gz,A1_6-SI_mRNAseq_R2.fastq.gz,,
A1_6-SI_content,SAMN22605079,"Cohousing set-up ""A1""",Pet store B,A1_6-SI_content_16S,16S sequencing of SI contents from outbred mouse from pet store B,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A1_6-SI_content_16S_R1.fastq.gz,A1_6-SI_content_16S_R2.fastq.gz,,
A1_6-SLN,SAMN22605080,"Cohousing set-up ""A1""",Pet store B,A1_6-SLN_mRNAseq,mRNAseq of outbred mouse from pet store B: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1_6-SLN_mRNAseq_R1.fastq.gz,A1_6-SLN_mRNAseq_R2.fastq.gz,,
A1c_1-LIV,SAMN22605081,"Cohousing set-up ""A1"", SPF control",B6,A1c_1-LIV_mRNAseq,mRNAseq of SPF B6 mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1c_1-LIV_mRNAseq_R1.fastq.gz,A1c_1-LIV_mRNAseq_R2.fastq.gz,,
A1c_1-SI,SAMN22605082,"Cohousing set-up ""A1"", SPF control",B6,A1c_1-SI_mRNAseq,mRNAseq of SPF B6 mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1c_1-SI_mRNAseq_R1.fastq.gz,A1c_1-SI_mRNAseq_R2.fastq.gz,,
A1c_1-SI_content,SAMN22605083,"Cohousing set-up ""A1"", SPF control",B6,A1c_1-SI_content_16S,16S sequencing of SI contents from SPF B6 mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A1c_1-SI_content_16S_R1.fastq.gz,A1c_1-SI_content_16S_R2.fastq.gz,,
A1c_1-SLN,SAMN22605084,"Cohousing set-up ""A1"", SPF control",B6,A1c_1-SLN_mRNAseq,mRNAseq of SPF B6 mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1c_1-SLN_mRNAseq_R1.fastq.gz,A1c_1-SLN_mRNAseq_R2.fastq.gz,,
A1c_2-LIV,SAMN22605085,"Cohousing set-up ""A1"", SPF control",IFNAR-/-,A1c_2-LIV_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1c_2-LIV_mRNAseq_R1.fastq.gz,A1c_2-LIV_mRNAseq_R2.fastq.gz,,
A1c_2-SI,SAMN22605086,"Cohousing set-up ""A1"", SPF control",IFNAR-/-,A1c_2-SI_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1c_2-SI_mRNAseq_R1.fastq.gz,A1c_2-SI_mRNAseq_R2.fastq.gz,,
A1c_2-SI_content,SAMN22605087,"Cohousing set-up ""A1"", SPF control",IFNAR-/-,A1c_2-SI_content_16S,16S sequencing of SI contents from SPF IFNAR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A1c_2-SI_content_16S_R1.fastq.gz,A1c_2-SI_content_16S_R2.fastq.gz,,
A1c_2-SLN,SAMN22605088,"Cohousing set-up ""A1"", SPF control",IFNAR-/-,A1c_2-SLN_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1c_2-SLN_mRNAseq_R1.fastq.gz,A1c_2-SLN_mRNAseq_R2.fastq.gz,,
A1c_3-LIV,SAMN22605089,"Cohousing set-up ""A1"", SPF control",IFNLR-/-,A1c_3-LIV_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1c_3-LIV_mRNAseq_R1.fastq.gz,A1c_3-LIV_mRNAseq_R2.fastq.gz,,
A1c_3-SI,SAMN22605090,"Cohousing set-up ""A1"", SPF control",IFNLR-/-,A1c_3-SI_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1c_3-SI_mRNAseq_R1.fastq.gz,A1c_3-SI_mRNAseq_R2.fastq.gz,,
A1c_3-SI_content,SAMN22605091,"Cohousing set-up ""A1"", SPF control",IFNLR-/-,A1c_3-SI_content_16S,16S sequencing of SI contents from SPF IFNLR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A1c_3-SI_content_16S_R1.fastq.gz,A1c_3-SI_content_16S_R2.fastq.gz,,
A1c_3-SLN,SAMN22605092,"Cohousing set-up ""A1"", SPF control",IFNLR-/-,A1c_3-SLN_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1c_3-SLN_mRNAseq_R1.fastq.gz,A1c_3-SLN_mRNAseq_R2.fastq.gz,,
A1c_4-LIV,SAMN22605093,"Cohousing set-up ""A1"", SPF control",IFNLAR-/-,A1c_4-LIV_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads (round 1) and 2x150 bp (round 2)",fastq,A1c_4-LIV_mRNAseq_round_1_R1.fastq.gz,A1c_4-LIV_mRNAseq_round_1_R2.fastq.gz,A1c_4-LIV_mRNAseq_round_2_R1.fastq.gz,A1c_4-LIV_mRNAseq_round_2_R2.fastq.gz
A1c_4-SI,SAMN22605094,"Cohousing set-up ""A1"", SPF control",IFNLAR-/-,A1c_4-SI_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads (round 1) and 2x150 bp (round 2)",fastq,A1c_4-SI_mRNAseq_round_1_R1.fastq.gz,A1c_4-SI_mRNAseq_round_1_R2.fastq.gz,A1c_4-SI_mRNAseq_round_2_R1.fastq.gz,A1c_4-SI_mRNAseq_round_2_R2.fastq.gz
A1c_4-SI_content,SAMN22605095,"Cohousing set-up ""A1"", SPF control",IFNLAR-/-,A1c_4-SI_content_16S,16S sequencing of SI contents from SPF IFNLAR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A1c_4-SI_content_16S_R1.fastq.gz,A1c_4-SI_content_16S_R2.fastq.gz,,
A1c_4-SLN,SAMN22605096,"Cohousing set-up ""A1"", SPF control",IFNLAR-/-,A1c_4-SLN_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A1c_4-SLN_mRNAseq_R1.fastq.gz,A1c_4-SLN_mRNAseq_R2.fastq.gz,,
A2_1-LIV,SAMN22605097,"Cohousing set-up ""A2""",B6,A2_1-LIV_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_1-LIV_mRNAseq_R1.fastq.gz,A2_1-LIV_mRNAseq_R2.fastq.gz,,
A2_1-SI,SAMN22605098,"Cohousing set-up ""A2""",B6,A2_1-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_1-SI_MAstv2_capsid_2_repA_R1.fastq.gz,A2_1-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
A2_1-SI,SAMN22605098,"Cohousing set-up ""A2""",B6,A2_1-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_1-SI_MAstv2_capsid_2_repB_R1.fastq.gz,A2_1-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
A2_1-SI,SAMN22605098,"Cohousing set-up ""A2""",B6,A2_1-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_1-SI_MAstv2_rdrp_repA_R1.fastq.gz,A2_1-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
A2_1-SI,SAMN22605098,"Cohousing set-up ""A2""",B6,A2_1-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_1-SI_MAstv2_rdrp_repB_R1.fastq.gz,A2_1-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
A2_1-SI,SAMN22605098,"Cohousing set-up ""A2""",B6,A2_1-SI_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_1-SI_mRNAseq_R1.fastq.gz,A2_1-SI_mRNAseq_R2.fastq.gz,,
A2_1-SI_content,SAMN22605099,"Cohousing set-up ""A2""",B6,A2_1-SI_content_16S,16S sequencing of SI contents from B6 mouse cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A2_1-SI_content_16S_R1.fastq.gz,A2_1-SI_content_16S_R2.fastq.gz,,
A2_1-SLN,SAMN22605100,"Cohousing set-up ""A2""",B6,A2_1-SLN_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_1-SLN_mRNAseq_R1.fastq.gz,A2_1-SLN_mRNAseq_R2.fastq.gz,,
A2_2-LIV,SAMN22605101,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-LIV_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_2-LIV_MAstv2_capsid_2_repA_R1.fastq.gz,A2_2-LIV_MAstv2_capsid_2_repA_R2.fastq.gz,,
A2_2-LIV,SAMN22605101,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-LIV_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_2-LIV_MAstv2_capsid_2_repB_R1.fastq.gz,A2_2-LIV_MAstv2_capsid_2_repB_R2.fastq.gz,,
A2_2-LIV,SAMN22605101,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-LIV_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_2-LIV_MAstv2_rdrp_repA_R1.fastq.gz,A2_2-LIV_MAstv2_rdrp_repA_R2.fastq.gz,,
A2_2-LIV,SAMN22605101,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-LIV_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_2-LIV_MAstv2_rdrp_repB_R1.fastq.gz,A2_2-LIV_MAstv2_rdrp_repB_R2.fastq.gz,,
A2_2-LIV,SAMN22605101,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-LIV_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_2-LIV_mRNAseq_R1.fastq.gz,A2_2-LIV_mRNAseq_R2.fastq.gz,,
A2_2-SI,SAMN22605102,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_2-SI_MAstv2_capsid_2_repA_R1.fastq.gz,A2_2-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
A2_2-SI,SAMN22605102,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_2-SI_MAstv2_capsid_2_repB_R1.fastq.gz,A2_2-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
A2_2-SI,SAMN22605102,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_2-SI_MAstv2_rdrp_repA_R1.fastq.gz,A2_2-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
A2_2-SI,SAMN22605102,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_2-SI_MAstv2_rdrp_repB_R1.fastq.gz,A2_2-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
A2_2-SI,SAMN22605102,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-SI_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_2-SI_mRNAseq_R1.fastq.gz,A2_2-SI_mRNAseq_R2.fastq.gz,,
A2_2-SI_content,SAMN22605103,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-SI_content_16S,16S sequencing of SI contents from IFNAR-/- mouse cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A2_2-SI_content_16S_R1.fastq.gz,A2_2-SI_content_16S_R2.fastq.gz,,
A2_2-SLN,SAMN22605104,"Cohousing set-up ""A2""",IFNAR-/-,A2_2-SLN_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_2-SLN_mRNAseq_R1.fastq.gz,A2_2-SLN_mRNAseq_R2.fastq.gz,,
A2_3-LIV,SAMN22605105,"Cohousing set-up ""A2""",IFNLR-/-,A2_3-LIV_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_3-LIV_mRNAseq_R1.fastq.gz,A2_3-LIV_mRNAseq_R2.fastq.gz,,
A2_3-SI,SAMN22605106,"Cohousing set-up ""A2""",IFNLR-/-,A2_3-SI_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_3-SI_mRNAseq_R1.fastq.gz,A2_3-SI_mRNAseq_R2.fastq.gz,,
A2_3-SI_content,SAMN22605107,"Cohousing set-up ""A2""",IFNLR-/-,A2_3-SI_content_16S,16S sequencing of SI contents from IFNLR-/- mouse cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A2_3-SI_content_16S_R1.fastq.gz,A2_3-SI_content_16S_R2.fastq.gz,,
A2_3-SLN,SAMN22605108,"Cohousing set-up ""A2""",IFNLR-/-,A2_3-SLN_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_3-SLN_mRNAseq_R1.fastq.gz,A2_3-SLN_mRNAseq_R2.fastq.gz,,
A2_4-LIV,SAMN22605109,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-LIV_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_4-LIV_MAstv2_capsid_2_repA_R1.fastq.gz,A2_4-LIV_MAstv2_capsid_2_repA_R2.fastq.gz,,
A2_4-LIV,SAMN22605109,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-LIV_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_4-LIV_MAstv2_capsid_2_repB_R1.fastq.gz,A2_4-LIV_MAstv2_capsid_2_repB_R2.fastq.gz,,
A2_4-LIV,SAMN22605109,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-LIV_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_4-LIV_MAstv2_rdrp_repA_R1.fastq.gz,A2_4-LIV_MAstv2_rdrp_repA_R2.fastq.gz,,
A2_4-LIV,SAMN22605109,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-LIV_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_4-LIV_MAstv2_rdrp_repB_R1.fastq.gz,A2_4-LIV_MAstv2_rdrp_repB_R2.fastq.gz,,
A2_4-LIV,SAMN22605109,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-LIV_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_4-LIV_mRNAseq_R1.fastq.gz,A2_4-LIV_mRNAseq_R2.fastq.gz,,
A2_4-SI,SAMN22605110,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_4-SI_MAstv2_capsid_2_repA_R1.fastq.gz,A2_4-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
A2_4-SI,SAMN22605110,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_4-SI_MAstv2_capsid_2_repB_R1.fastq.gz,A2_4-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
A2_4-SI,SAMN22605110,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_4-SI_MAstv2_rdrp_repA_R1.fastq.gz,A2_4-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
A2_4-SI,SAMN22605110,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_4-SI_MAstv2_rdrp_repB_R1.fastq.gz,A2_4-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
A2_4-SI,SAMN22605110,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-SI_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_4-SI_mRNAseq_R1.fastq.gz,A2_4-SI_mRNAseq_R2.fastq.gz,,
A2_4-SI_content,SAMN22605111,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-SI_content_16S,16S sequencing of SI contents from IFNLAR-/- mouse cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A2_4-SI_content_16S_R1.fastq.gz,A2_4-SI_content_16S_R2.fastq.gz,,
A2_4-SLN,SAMN22605112,"Cohousing set-up ""A2""",IFNLAR-/-,A2_4-SLN_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_4-SLN_mRNAseq_R1.fastq.gz,A2_4-SLN_mRNAseq_R2.fastq.gz,,
A2_5-LIV,SAMN22605113,"Cohousing set-up ""A2""",Pet store A,A2_5-LIV_mRNAseq,mRNAseq of outbred mouse from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_5-LIV_mRNAseq_R1.fastq.gz,A2_5-LIV_mRNAseq_R2.fastq.gz,,
A2_5-SI,SAMN22605114,"Cohousing set-up ""A2""",Pet store A,A2_5-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_5-SI_MAstv2_capsid_2_repA_R1.fastq.gz,A2_5-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
A2_5-SI,SAMN22605114,"Cohousing set-up ""A2""",Pet store A,A2_5-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_5-SI_MAstv2_capsid_2_repB_R1.fastq.gz,A2_5-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
A2_5-SI,SAMN22605114,"Cohousing set-up ""A2""",Pet store A,A2_5-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_5-SI_MAstv2_rdrp_repA_R1.fastq.gz,A2_5-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
A2_5-SI,SAMN22605114,"Cohousing set-up ""A2""",Pet store A,A2_5-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_5-SI_MAstv2_rdrp_repB_R1.fastq.gz,A2_5-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
A2_5-SI,SAMN22605114,"Cohousing set-up ""A2""",Pet store A,A2_5-SI_mRNAseq,mRNAseq of outbred mouse from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_5-SI_mRNAseq_R1.fastq.gz,A2_5-SI_mRNAseq_R2.fastq.gz,,
A2_5-SI_content,SAMN22605115,"Cohousing set-up ""A2""",Pet store A,A2_5-SI_content_16S,16S sequencing of SI contents from outbred mouse from pet store A,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A2_5-SI_content_16S_R1.fastq.gz,A2_5-SI_content_16S_R2.fastq.gz,,
A2_5-SLN,SAMN22605116,"Cohousing set-up ""A2""",Pet store A,A2_5-SLN_mRNAseq,mRNAseq of outbred mouse from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_5-SLN_mRNAseq_R1.fastq.gz,A2_5-SLN_mRNAseq_R2.fastq.gz,,
A2_6-LIV,SAMN22605117,"Cohousing set-up ""A2""",Pet store B,A2_6-LIV_mRNAseq,mRNAseq of outbred mouse from pet store B: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_6-LIV_mRNAseq_R1.fastq.gz,A2_6-LIV_mRNAseq_R2.fastq.gz,,
A2_6-SI,SAMN22605118,"Cohousing set-up ""A2""",Pet store B,A2_6-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_6-SI_MAstv2_capsid_2_repA_R1.fastq.gz,A2_6-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
A2_6-SI,SAMN22605118,"Cohousing set-up ""A2""",Pet store B,A2_6-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,A2_6-SI_MAstv2_capsid_2_repB_R1.fastq.gz,A2_6-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
A2_6-SI,SAMN22605118,"Cohousing set-up ""A2""",Pet store B,A2_6-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_6-SI_MAstv2_rdrp_repA_R1.fastq.gz,A2_6-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
A2_6-SI,SAMN22605118,"Cohousing set-up ""A2""",Pet store B,A2_6-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,A2_6-SI_MAstv2_rdrp_repB_R1.fastq.gz,A2_6-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
A2_6-SI,SAMN22605118,"Cohousing set-up ""A2""",Pet store B,A2_6-SI_mRNAseq,mRNAseq of outbred mouse from pet store B: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_6-SI_mRNAseq_R1.fastq.gz,A2_6-SI_mRNAseq_R2.fastq.gz,,
A2_6-SI_content,SAMN22605119,"Cohousing set-up ""A2""",Pet store B,A2_6-SI_content_16S,16S sequencing of SI contents from outbred mouse from pet store B,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A2_6-SI_content_16S_R1.fastq.gz,A2_6-SI_content_16S_R2.fastq.gz,,
A2_6-SLN,SAMN22605120,"Cohousing set-up ""A2""",Pet store B,A2_6-SLN_mRNAseq,mRNAseq of outbred mouse from pet store B: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2_6-SLN_mRNAseq_R1.fastq.gz,A2_6-SLN_mRNAseq_R2.fastq.gz,,
A2c_1-LIV,SAMN22605121,"Cohousing set-up ""A2"", SPF control",B6,A2c_1-LIV_mRNAseq,mRNAseq of SPF B6 mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2c_1-LIV_mRNAseq_R1.fastq.gz,A2c_1-LIV_mRNAseq_R2.fastq.gz,,
A2c_1-SI,SAMN22605122,"Cohousing set-up ""A2"", SPF control",B6,A2c_1-SI_mRNAseq,mRNAseq of SPF B6 mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2c_1-SI_mRNAseq_R1.fastq.gz,A2c_1-SI_mRNAseq_R2.fastq.gz,,
A2c_1-SI_content,SAMN22605123,"Cohousing set-up ""A2"", SPF control",B6,A2c_1-SI_content_16S,16S sequencing of SI contents from SPF B6 mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A2c_1-SI_content_16S_R1.fastq.gz,A2c_1-SI_content_16S_R2.fastq.gz,,
A2c_1-SLN,SAMN22605124,"Cohousing set-up ""A2"", SPF control",B6,A2c_1-SLN_mRNAseq,mRNAseq of SPF B6 mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2c_1-SLN_mRNAseq_R1.fastq.gz,A2c_1-SLN_mRNAseq_R2.fastq.gz,,
A2c_2-LIV,SAMN22605125,"Cohousing set-up ""A2"", SPF control",IFNAR-/-,A2c_2-LIV_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2c_2-LIV_mRNAseq_R1.fastq.gz,A2c_2-LIV_mRNAseq_R2.fastq.gz,,
A2c_2-SI,SAMN22605126,"Cohousing set-up ""A2"", SPF control",IFNAR-/-,A2c_2-SI_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2c_2-SI_mRNAseq_R1.fastq.gz,A2c_2-SI_mRNAseq_R2.fastq.gz,,
A2c_2-SI_content,SAMN22605127,"Cohousing set-up ""A2"", SPF control",IFNAR-/-,A2c_2-SI_content_16S,16S sequencing of SI contents from SPF IFNAR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A2c_2-SI_content_16S_R1.fastq.gz,A2c_2-SI_content_16S_R2.fastq.gz,,
A2c_2-SLN,SAMN22605128,"Cohousing set-up ""A2"", SPF control",IFNAR-/-,A2c_2-SLN_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2c_2-SLN_mRNAseq_R1.fastq.gz,A2c_2-SLN_mRNAseq_R2.fastq.gz,,
A2c_3-LIV,SAMN22605129,"Cohousing set-up ""A2"", SPF control",IFNLR-/-,A2c_3-LIV_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2c_3-LIV_mRNAseq_R1.fastq.gz,A2c_3-LIV_mRNAseq_R2.fastq.gz,,
A2c_3-SI,SAMN22605130,"Cohousing set-up ""A2"", SPF control",IFNLR-/-,A2c_3-SI_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2c_3-SI_mRNAseq_R1.fastq.gz,A2c_3-SI_mRNAseq_R2.fastq.gz,,
A2c_3-SI_content,SAMN22605131,"Cohousing set-up ""A2"", SPF control",IFNLR-/-,A2c_3-SI_content_16S,16S sequencing of SI contents from SPF IFNLR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A2c_3-SI_content_16S_R1.fastq.gz,A2c_3-SI_content_16S_R2.fastq.gz,,
A2c_3-SLN,SAMN22605132,"Cohousing set-up ""A2"", SPF control",IFNLR-/-,A2c_3-SLN_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2c_3-SLN_mRNAseq_R1.fastq.gz,A2c_3-SLN_mRNAseq_R2.fastq.gz,,
A2c_4-LIV,SAMN22605133,"Cohousing set-up ""A2"", SPF control",IFNLAR-/-,A2c_4-LIV_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads (round 1) and 2x150 bp (round 2)",fastq,A2c_4-LIV_mRNAseq_round_1_R1.fastq.gz,A2c_4-LIV_mRNAseq_round_1_R2.fastq.gz,A2c_4-LIV_mRNAseq_round_2_R1.fastq.gz,A2c_4-LIV_mRNAseq_round_2_R2.fastq.gz
A2c_4-SI,SAMN22605134,"Cohousing set-up ""A2"", SPF control",IFNLAR-/-,A2c_4-SI_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads (round 1) and 2x150 bp (round 2)",fastq,A2c_4-SI_mRNAseq_round_1_R1.fastq.gz,A2c_4-SI_mRNAseq_round_1_R2.fastq.gz,A2c_4-SI_mRNAseq_round_2_R1.fastq.gz,A2c_4-SI_mRNAseq_round_2_R2.fastq.gz
A2c_4-SI_content,SAMN22605135,"Cohousing set-up ""A2"", SPF control",IFNLAR-/-,A2c_4-SI_content_16S,16S sequencing of SI contents from SPF IFNLAR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A2c_4-SI_content_16S_R1.fastq.gz,A2c_4-SI_content_16S_R2.fastq.gz,,
A2c_4-SLN,SAMN22605136,"Cohousing set-up ""A2"", SPF control",IFNLAR-/-,A2c_4-SLN_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A2c_4-SLN_mRNAseq_R1.fastq.gz,A2c_4-SLN_mRNAseq_R2.fastq.gz,,
A3_1-LIV,SAMN22605137,"Cohousing set-up ""A3""",B6,A3_1-LIV_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_1-LIV_mRNAseq_R1.fastq.gz,A3_1-LIV_mRNAseq_R2.fastq.gz,,
A3_1-SI,SAMN22605138,"Cohousing set-up ""A3""",B6,A3_1-SI_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_1-SI_mRNAseq_R1.fastq.gz,A3_1-SI_mRNAseq_R2.fastq.gz,,
A3_1-SI_content,SAMN22605139,"Cohousing set-up ""A3""",B6,A3_1-SI_content_16S,16S sequencing of SI contents from B6 mouse cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A3_1-SI_content_16S_R1.fastq.gz,A3_1-SI_content_16S_R2.fastq.gz,,
A3_1-SLN,SAMN22605140,"Cohousing set-up ""A3""",B6,A3_1-SLN_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_1-SLN_mRNAseq_R1.fastq.gz,A3_1-SLN_mRNAseq_R2.fastq.gz,,
A3_2-LIV,SAMN22605141,"Cohousing set-up ""A3""",IFNAR-/-,A3_2-LIV_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_2-LIV_mRNAseq_R1.fastq.gz,A3_2-LIV_mRNAseq_R2.fastq.gz,,
A3_2-SI,SAMN22605142,"Cohousing set-up ""A3""",IFNAR-/-,A3_2-SI_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_2-SI_mRNAseq_R1.fastq.gz,A3_2-SI_mRNAseq_R2.fastq.gz,,
A3_2-SI_content,SAMN22605143,"Cohousing set-up ""A3""",IFNAR-/-,A3_2-SI_content_16S,16S sequencing of SI contents from IFNAR-/- mouse cohoused 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A3_2-SI_content_16S_R1.fastq.gz,A3_2-SI_content_16S_R2.fastq.gz,,
A3_2-SLN,SAMN22605144,"Cohousing set-up ""A3""",IFNAR-/-,A3_2-SLN_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_2-SLN_mRNAseq_R1.fastq.gz,A3_2-SLN_mRNAseq_R2.fastq.gz,,
A3_3-LIV,SAMN22605145,"Cohousing set-up ""A3""",IFNLR-/-,A3_3-LIV_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_3-LIV_mRNAseq_R1.fastq.gz,A3_3-LIV_mRNAseq_R2.fastq.gz,,
A3_3-SI,SAMN22605146,"Cohousing set-up ""A3""",IFNLR-/-,A3_3-SI_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_3-SI_mRNAseq_R1.fastq.gz,A3_3-SI_mRNAseq_R2.fastq.gz,,
A3_3-SI_content,SAMN22605147,"Cohousing set-up ""A3""",IFNLR-/-,A3_3-SI_content_16S,16S sequencing of SI contents from IFNLR-/- mouse cohoused 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A3_3-SI_content_16S_R1.fastq.gz,A3_3-SI_content_16S_R2.fastq.gz,,
A3_3-SLN,SAMN22605148,"Cohousing set-up ""A3""",IFNLR-/-,A3_3-SLN_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_3-SLN_mRNAseq_R1.fastq.gz,A3_3-SLN_mRNAseq_R2.fastq.gz,,
A3_4-LIV,SAMN22605149,"Cohousing set-up ""A3""",IFNLAR-/-,A3_4-LIV_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_4-LIV_mRNAseq_R1.fastq.gz,A3_4-LIV_mRNAseq_R2.fastq.gz,,
A3_4-SI,SAMN22605150,"Cohousing set-up ""A3""",IFNLAR-/-,A3_4-SI_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_4-SI_mRNAseq_R1.fastq.gz,A3_4-SI_mRNAseq_R2.fastq.gz,,
A3_4-SI_content,SAMN22605151,"Cohousing set-up ""A3""",IFNLAR-/-,A3_4-SI_content_16S,16S sequencing of SI contents from IFNLAR-/- mouse cohoused 2 outbred mice from pet stores A (N=1) and B (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A3_4-SI_content_16S_R1.fastq.gz,A3_4-SI_content_16S_R2.fastq.gz,,
A3_4-SLN,SAMN22605152,"Cohousing set-up ""A3""",IFNLAR-/-,A3_4-SLN_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores A (N=1) and B (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_4-SLN_mRNAseq_R1.fastq.gz,A3_4-SLN_mRNAseq_R2.fastq.gz,,
A3_5-LIV,SAMN22605153,"Cohousing set-up ""A3""",Pet store B,A3_5-LIV_mRNAseq,mRNAseq of outbred mouse from pet store B: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_5-LIV_mRNAseq_R1.fastq.gz,A3_5-LIV_mRNAseq_R2.fastq.gz,,
A3_5-SI,SAMN22605154,"Cohousing set-up ""A3""",Pet store B,A3_5-SI_mRNAseq,mRNAseq of outbred mouse from pet store B: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_5-SI_mRNAseq_R1.fastq.gz,A3_5-SI_mRNAseq_R2.fastq.gz,,
A3_5-SI_content,SAMN22605155,"Cohousing set-up ""A3""",Pet store B,A3_5-SI_content_16S,16S sequencing of SI contents from outbred mouse from pet store B,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A3_5-SI_content_16S_R1.fastq.gz,A3_5-SI_content_16S_R2.fastq.gz,,
A3_5-SLN,SAMN22605156,"Cohousing set-up ""A3""",Pet store B,A3_5-SLN_mRNAseq,mRNAseq of outbred mouse from pet store B: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_5-SLN_mRNAseq_R1.fastq.gz,A3_5-SLN_mRNAseq_R2.fastq.gz,,
A3_6-LIV,SAMN22605157,"Cohousing set-up ""A3""",Pet store A,A3_6-LIV_mRNAseq,mRNAseq of outbred mouse from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_6-LIV_mRNAseq_R1.fastq.gz,A3_6-LIV_mRNAseq_R2.fastq.gz,,
A3_6-SI,SAMN22605158,"Cohousing set-up ""A3""",Pet store A,A3_6-SI_mRNAseq,mRNAseq of outbred mouse from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_6-SI_mRNAseq_R1.fastq.gz,A3_6-SI_mRNAseq_R2.fastq.gz,,
A3_6-SI_content,SAMN22605159,"Cohousing set-up ""A3""",Pet store A,A3_6-SI_content_16S,16S sequencing of SI contents from outbred mouse from pet store A,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A3_6-SI_content_16S_R1.fastq.gz,A3_6-SI_content_16S_R2.fastq.gz,,
A3_6-SLN,SAMN22605160,"Cohousing set-up ""A3""",Pet store A,A3_6-SLN_mRNAseq,mRNAseq of outbred mouse from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3_6-SLN_mRNAseq_R1.fastq.gz,A3_6-SLN_mRNAseq_R2.fastq.gz,,
A3c_1-LIV,SAMN22605161,"Cohousing set-up ""A3"", SPF control",B6,A3c_1-LIV_mRNAseq,mRNAseq of SPF B6 mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3c_1-LIV_mRNAseq_R1.fastq.gz,A3c_1-LIV_mRNAseq_R2.fastq.gz,,
A3c_1-SI,SAMN22605162,"Cohousing set-up ""A3"", SPF control",B6,A3c_1-SI_mRNAseq,mRNAseq of SPF B6 mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3c_1-SI_mRNAseq_R1.fastq.gz,A3c_1-SI_mRNAseq_R2.fastq.gz,,
A3c_1-SI_content,SAMN22605163,"Cohousing set-up ""A3"", SPF control",B6,A3c_1-SI_content_16S,16S sequencing of SI contents from SPF B6 mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A3c_1-SI_content_16S_R1.fastq.gz,A3c_1-SI_content_16S_R2.fastq.gz,,
A3c_1-SLN,SAMN22605164,"Cohousing set-up ""A3"", SPF control",B6,A3c_1-SLN_mRNAseq,mRNAseq of SPF B6 mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3c_1-SLN_mRNAseq_R1.fastq.gz,A3c_1-SLN_mRNAseq_R2.fastq.gz,,
A3c_2-LIV,SAMN22605165,"Cohousing set-up ""A3"", SPF control",IFNAR-/-,A3c_2-LIV_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3c_2-LIV_mRNAseq_R1.fastq.gz,A3c_2-LIV_mRNAseq_R2.fastq.gz,,
A3c_2-SI,SAMN22605166,"Cohousing set-up ""A3"", SPF control",IFNAR-/-,A3c_2-SI_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3c_2-SI_mRNAseq_R1.fastq.gz,A3c_2-SI_mRNAseq_R2.fastq.gz,,
A3c_2-SI_content,SAMN22605167,"Cohousing set-up ""A3"", SPF control",IFNAR-/-,A3c_2-SI_content_16S,16S sequencing of SI contents from SPF IFNAR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A3c_2-SI_content_16S_R1.fastq.gz,A3c_2-SI_content_16S_R2.fastq.gz,,
A3c_2-SLN,SAMN22605168,"Cohousing set-up ""A3"", SPF control",IFNAR-/-,A3c_2-SLN_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3c_2-SLN_mRNAseq_R1.fastq.gz,A3c_2-SLN_mRNAseq_R2.fastq.gz,,
A3c_3-LIV,SAMN22605169,"Cohousing set-up ""A3"", SPF control",IFNLR-/-,A3c_3-LIV_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3c_3-LIV_mRNAseq_R1.fastq.gz,A3c_3-LIV_mRNAseq_R2.fastq.gz,,
A3c_3-SI,SAMN22605170,"Cohousing set-up ""A3"", SPF control",IFNLR-/-,A3c_3-SI_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3c_3-SI_mRNAseq_R1.fastq.gz,A3c_3-SI_mRNAseq_R2.fastq.gz,,
A3c_3-SI_content,SAMN22605171,"Cohousing set-up ""A3"", SPF control",IFNLR-/-,A3c_3-SI_content_16S,16S sequencing of SI contents from SPF IFNLR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A3c_3-SI_content_16S_R1.fastq.gz,A3c_3-SI_content_16S_R2.fastq.gz,,
A3c_3-SLN,SAMN22605172,"Cohousing set-up ""A3"", SPF control",IFNLR-/-,A3c_3-SLN_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3c_3-SLN_mRNAseq_R1.fastq.gz,A3c_3-SLN_mRNAseq_R2.fastq.gz,,
A3c_4-LIV,SAMN22605173,"Cohousing set-up ""A3"", SPF control",IFNLAR-/-,A3c_4-LIV_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads (round 1) and 2x150 bp (round 2)",fastq,A3c_4-LIV_mRNAseq_round_1_R1.fastq.gz,A3c_4-LIV_mRNAseq_round_1_R2.fastq.gz,A3c_4-LIV_mRNAseq_round_2_R1.fastq.gz,A3c_4-LIV_mRNAseq_round_2_R2.fastq.gz
A3c_4-SI,SAMN22605174,"Cohousing set-up ""A3"", SPF control",IFNLAR-/-,A3c_4-SI_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads (round 1) and 2x150 bp (round 2)",fastq,A3c_4-SI_mRNAseq_round_1_R1.fastq.gz,A3c_4-SI_mRNAseq_round_1_R2.fastq.gz,A3c_4-SI_mRNAseq_round_2_R1.fastq.gz,A3c_4-SI_mRNAseq_round_2_R2.fastq.gz
A3c_4-SI_content,SAMN22605175,"Cohousing set-up ""A3"", SPF control",IFNLAR-/-,A3c_4-SI_content_16S,16S sequencing of SI contents from SPF IFNLAR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A3c_4-SI_content_16S_R1.fastq.gz,A3c_4-SI_content_16S_R2.fastq.gz,,
A3c_4-SLN,SAMN22605176,"Cohousing set-up ""A3"", SPF control",IFNLAR-/-,A3c_4-SLN_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A3c_4-SLN_mRNAseq_R1.fastq.gz,A3c_4-SLN_mRNAseq_R2.fastq.gz,,
A4_1-LIV,SAMN22605177,"Cohousing set-up ""A4""",B6,A4_1-LIV_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_1-LIV_mRNAseq_R1.fastq.gz,A4_1-LIV_mRNAseq_R2.fastq.gz,,
A4_1-SI,SAMN22605178,"Cohousing set-up ""A4""",B6,A4_1-SI_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_1-SI_mRNAseq_R1.fastq.gz,A4_1-SI_mRNAseq_R2.fastq.gz,,
A4_1-SI_content,SAMN22605179,"Cohousing set-up ""A4""",B6,A4_1-SI_content_16S,16S sequencing of SI contents from B6 mouse cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A4_1-SI_content_16S_R1.fastq.gz,A4_1-SI_content_16S_R2.fastq.gz,,
A4_1-SLN,SAMN22605180,"Cohousing set-up ""A4""",B6,A4_1-SLN_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_1-SLN_mRNAseq_R1.fastq.gz,A4_1-SLN_mRNAseq_R2.fastq.gz,,
A4_2-LIV,SAMN22605181,"Cohousing set-up ""A4""",IFNAR-/-,A4_2-LIV_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_2-LIV_mRNAseq_R1.fastq.gz,A4_2-LIV_mRNAseq_R2.fastq.gz,,
A4_2-SI,SAMN22605182,"Cohousing set-up ""A4""",IFNAR-/-,A4_2-SI_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_2-SI_mRNAseq_R1.fastq.gz,A4_2-SI_mRNAseq_R2.fastq.gz,,
A4_2-SI_content,SAMN22605183,"Cohousing set-up ""A4""",IFNAR-/-,A4_2-SI_content_16S,16S sequencing of SI contents from IFNAR-/- mouse cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A4_2-SI_content_16S_R1.fastq.gz,A4_2-SI_content_16S_R2.fastq.gz,,
A4_2-SLN,SAMN22605184,"Cohousing set-up ""A4""",IFNAR-/-,A4_2-SLN_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_2-SLN_mRNAseq_R1.fastq.gz,A4_2-SLN_mRNAseq_R2.fastq.gz,,
A4_3-LIV,SAMN22605185,"Cohousing set-up ""A4""",IFNLR-/-,A4_3-LIV_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_3-LIV_mRNAseq_R1.fastq.gz,A4_3-LIV_mRNAseq_R2.fastq.gz,,
A4_3-SI,SAMN22605186,"Cohousing set-up ""A4""",IFNLR-/-,A4_3-SI_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_3-SI_mRNAseq_R1.fastq.gz,A4_3-SI_mRNAseq_R2.fastq.gz,,
A4_3-SI_content,SAMN22605187,"Cohousing set-up ""A4""",IFNLR-/-,A4_3-SI_content_16S,16S sequencing of SI contents from IFNLR-/- mouse cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A4_3-SI_content_16S_R1.fastq.gz,A4_3-SI_content_16S_R2.fastq.gz,,
A4_3-SLN,SAMN22605188,"Cohousing set-up ""A4""",IFNLR-/-,A4_3-SLN_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_3-SLN_mRNAseq_R1.fastq.gz,A4_3-SLN_mRNAseq_R2.fastq.gz,,
A4_4-LIV,SAMN22605189,"Cohousing set-up ""A4""",IFNLAR-/-,A4_4-LIV_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_4-LIV_mRNAseq_R1.fastq.gz,A4_4-LIV_mRNAseq_R2.fastq.gz,,
A4_4-SI,SAMN22605190,"Cohousing set-up ""A4""",IFNLAR-/-,A4_4-SI_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_4-SI_mRNAseq_R1.fastq.gz,A4_4-SI_mRNAseq_R2.fastq.gz,,
A4_4-SI_content,SAMN22605191,"Cohousing set-up ""A4""",IFNLAR-/-,A4_4-SI_content_16S,16S sequencing of SI contents from IFNLAR-/- mouse cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1),AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A4_4-SI_content_16S_R1.fastq.gz,A4_4-SI_content_16S_R2.fastq.gz,,
A4_4-SLN,SAMN22605192,"Cohousing set-up ""A4""",IFNLAR-/-,A4_4-SLN_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with 2 outbred mice from pet stores B (N=1) and C (N=1): spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_4-SLN_mRNAseq_R1.fastq.gz,A4_4-SLN_mRNAseq_R2.fastq.gz,,
A4_5-LIV,SAMN22605193,"Cohousing set-up ""A4""",Pet store B,A4_5-LIV_mRNAseq,mRNAseq of outbred mouse from pet store B: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_5-LIV_mRNAseq_R1.fastq.gz,A4_5-LIV_mRNAseq_R2.fastq.gz,,
A4_5-SI,SAMN22605194,"Cohousing set-up ""A4""",Pet store B,A4_5-SI_mRNAseq,mRNAseq of outbred mouse from pet store B: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_5-SI_mRNAseq_R1.fastq.gz,A4_5-SI_mRNAseq_R2.fastq.gz,,
A4_5-SI_content,SAMN22605195,"Cohousing set-up ""A4""",Pet store B,A4_5-SI_content_16S,16S sequencing of SI contents from outbred mouse from pet store B,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A4_5-SI_content_16S_R1.fastq.gz,A4_5-SI_content_16S_R2.fastq.gz,,
A4_5-SLN,SAMN22605196,"Cohousing set-up ""A4""",Pet store B,A4_5-SLN_mRNAseq,mRNAseq of outbred mouse from pet store B: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_5-SLN_mRNAseq_R1.fastq.gz,A4_5-SLN_mRNAseq_R2.fastq.gz,,
A4_6-LIV,SAMN22605197,"Cohousing set-up ""A4""",Pet store C,A4_6-LIV_mRNAseq,mRNAseq of outbred mouse from pet store C: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_6-LIV_mRNAseq_R1.fastq.gz,A4_6-LIV_mRNAseq_R2.fastq.gz,,
A4_6-SI,SAMN22605198,"Cohousing set-up ""A4""",Pet store C,A4_6-SI_mRNAseq,mRNAseq of outbred mouse from pet store C: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_6-SI_mRNAseq_R1.fastq.gz,A4_6-SI_mRNAseq_R2.fastq.gz,,
A4_6-SI_content,SAMN22605199,"Cohousing set-up ""A4""",Pet store C,A4_6-SI_content_16S,16S sequencing of SI contents from outbred mouse from pet store C,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A4_6-SI_content_16S_R1.fastq.gz,A4_6-SI_content_16S_R2.fastq.gz,,
A4_6-SLN,SAMN22605200,"Cohousing set-up ""A4""",Pet store C,A4_6-SLN_mRNAseq,mRNAseq of outbred mouse from pet store C: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4_6-SLN_mRNAseq_R1.fastq.gz,A4_6-SLN_mRNAseq_R2.fastq.gz,,
A4c_1-LIV,SAMN22605201,"Cohousing set-up ""A4"", SPF control",B6,A4c_1-LIV_mRNAseq,mRNAseq of SPF B6 mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_1-LIV_mRNAseq_R1.fastq.gz,A4c_1-LIV_mRNAseq_R2.fastq.gz,,
A4c_1-SI,SAMN22605202,"Cohousing set-up ""A4"", SPF control",B6,A4c_1-SI_mRNAseq,mRNAseq of SPF B6 mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_1-SI_mRNAseq_R1.fastq.gz,A4c_1-SI_mRNAseq_R2.fastq.gz,,
A4c_1-SI_content,SAMN22605203,"Cohousing set-up ""A4"", SPF control",B6,A4c_1-SI_content_16S,16S sequencing of SI contents from SPF B6 mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A4c_1-SI_content_16S_R1.fastq.gz,A4c_1-SI_content_16S_R2.fastq.gz,,
A4c_1-SLN,SAMN22605204,"Cohousing set-up ""A4"", SPF control",B6,A4c_1-SLN_mRNAseq,mRNAseq of SPF B6 mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_1-SLN_mRNAseq_R1.fastq.gz,A4c_1-SLN_mRNAseq_R2.fastq.gz,,
A4c_2-LIV,SAMN22605205,"Cohousing set-up ""A4"", SPF control",IFNAR-/-,A4c_2-LIV_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_2-LIV_mRNAseq_R1.fastq.gz,A4c_2-LIV_mRNAseq_R2.fastq.gz,,
A4c_2-SI,SAMN22605206,"Cohousing set-up ""A4"", SPF control",IFNAR-/-,A4c_2-SI_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_2-SI_mRNAseq_R1.fastq.gz,A4c_2-SI_mRNAseq_R2.fastq.gz,,
A4c_2-SI_content,SAMN22605207,"Cohousing set-up ""A4"", SPF control",IFNAR-/-,A4c_2-SI_content_16S,16S sequencing of SI contents from SPF IFNAR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A4c_2-SI_content_16S_R1.fastq.gz,A4c_2-SI_content_16S_R2.fastq.gz,,
A4c_2-SLN,SAMN22605208,"Cohousing set-up ""A4"", SPF control",IFNAR-/-,A4c_2-SLN_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_2-SLN_mRNAseq_R1.fastq.gz,A4c_2-SLN_mRNAseq_R2.fastq.gz,,
A4c_3-LIV,SAMN22605209,"Cohousing set-up ""A4"", SPF control",IFNLR-/-,A4c_3-LIV_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_3-LIV_mRNAseq_R1.fastq.gz,A4c_3-LIV_mRNAseq_R2.fastq.gz,,
A4c_3-SI,SAMN22605210,"Cohousing set-up ""A4"", SPF control",IFNLR-/-,A4c_3-SI_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_3-SI_mRNAseq_R1.fastq.gz,A4c_3-SI_mRNAseq_R2.fastq.gz,,
A4c_3-SI_content,SAMN22605211,"Cohousing set-up ""A4"", SPF control",IFNLR-/-,A4c_3-SI_content_16S,16S sequencing of SI contents from SPF IFNLR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A4c_3-SI_content_16S_R1.fastq.gz,A4c_3-SI_content_16S_R2.fastq.gz,,
A4c_3-SLN,SAMN22605212,"Cohousing set-up ""A4"", SPF control",IFNLR-/-,A4c_3-SLN_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_3-SLN_mRNAseq_R1.fastq.gz,A4c_3-SLN_mRNAseq_R2.fastq.gz,,
A4c_4-LIV,SAMN22605213,"Cohousing set-up ""A4"", SPF control",IFNLAR-/-,A4c_4-LIV_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_4-LIV_mRNAseq_R1.fastq.gz,A4c_4-LIV_mRNAseq_R2.fastq.gz,,
A4c_4-SI,SAMN22605214,"Cohousing set-up ""A4"", SPF control",IFNLAR-/-,A4c_4-SI_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_4-SI_mRNAseq_R1.fastq.gz,A4c_4-SI_mRNAseq_R2.fastq.gz,,
A4c_4-SI_content,SAMN22605215,"Cohousing set-up ""A4"", SPF control",IFNLAR-/-,A4c_4-SI_content_16S,16S sequencing of SI contents from SPF IFNLAR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,A4c_4-SI_content_16S_R1.fastq.gz,A4c_4-SI_content_16S_R2.fastq.gz,,
A4c_4-SLN,SAMN22605216,"Cohousing set-up ""A4"", SPF control",IFNLAR-/-,A4c_4-SLN_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,A4c_4-SLN_mRNAseq_R1.fastq.gz,A4c_4-SLN_mRNAseq_R2.fastq.gz,,
B1_1-LIV,SAMN22605217,"Cohousing set-up ""B1""",B6,B1_1-LIV_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store C: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_1-LIV_mRNAseq_R1.fastq.gz,B1_1-LIV_mRNAseq_R2.fastq.gz,,
B1_1-SI,SAMN22605218,"Cohousing set-up ""B1""",B6,B1_1-SI_MAstv2_capsid_1_repA,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B1_1-SI_MAstv2_capsid_1_repA_R1.fastq.gz,B1_1-SI_MAstv2_capsid_1_repA_R2.fastq.gz,,
B1_1-SI,SAMN22605218,"Cohousing set-up ""B1""",B6,B1_1-SI_MAstv2_capsid_1_repB,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B1_1-SI_MAstv2_capsid_1_repB_R1.fastq.gz,B1_1-SI_MAstv2_capsid_1_repB_R2.fastq.gz,,
B1_1-SI,SAMN22605218,"Cohousing set-up ""B1""",B6,B1_1-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B1_1-SI_MAstv2_capsid_2_repA_R1.fastq.gz,B1_1-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
B1_1-SI,SAMN22605218,"Cohousing set-up ""B1""",B6,B1_1-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B1_1-SI_MAstv2_capsid_2_repB_R1.fastq.gz,B1_1-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
B1_1-SI,SAMN22605218,"Cohousing set-up ""B1""",B6,B1_1-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,B1_1-SI_MAstv2_rdrp_repA_R1.fastq.gz,B1_1-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
B1_1-SI,SAMN22605218,"Cohousing set-up ""B1""",B6,B1_1-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,B1_1-SI_MAstv2_rdrp_repB_R1.fastq.gz,B1_1-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
B1_1-SI,SAMN22605218,"Cohousing set-up ""B1""",B6,B1_1-SI_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store C: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_1-SI_mRNAseq_R1.fastq.gz,B1_1-SI_mRNAseq_R2.fastq.gz,,
B1_1-SI_content,SAMN22605219,"Cohousing set-up ""B1""",B6,B1_1-SI_content_16S,16S sequencing of SI contents from B6 mouse cohoused with outbred mouse from pet store C,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B1_1-SI_content_16S_R1.fastq.gz,B1_1-SI_content_16S_R2.fastq.gz,,
B1_1-SLN,SAMN22605220,"Cohousing set-up ""B1""",B6,B1_1-SLN_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store C: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_1-SLN_mRNAseq_R1.fastq.gz,B1_1-SLN_mRNAseq_R2.fastq.gz,,
B1_2-LIV,SAMN22605221,"Cohousing set-up ""B1""",IFNAR-/-,B1_2-LIV_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store C: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_2-LIV_mRNAseq_R1.fastq.gz,B1_2-LIV_mRNAseq_R2.fastq.gz,,
B1_2-SI,SAMN22605222,"Cohousing set-up ""B1""",IFNAR-/-,B1_2-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B1_2-SI_MAstv2_capsid_2_repA_R1.fastq.gz,B1_2-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
B1_2-SI,SAMN22605222,"Cohousing set-up ""B1""",IFNAR-/-,B1_2-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B1_2-SI_MAstv2_capsid_2_repB_R1.fastq.gz,B1_2-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
B1_2-SI,SAMN22605222,"Cohousing set-up ""B1""",IFNAR-/-,B1_2-SI_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store C: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_2-SI_mRNAseq_R1.fastq.gz,B1_2-SI_mRNAseq_R2.fastq.gz,,
B1_2-SI_content,SAMN22605223,"Cohousing set-up ""B1""",IFNAR-/-,B1_2-SI_content_16S,16S sequencing of SI contents from IFNAR-/- mouse cohoused with outbred mouse from pet store C,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B1_2-SI_content_16S_R1.fastq.gz,B1_2-SI_content_16S_R2.fastq.gz,,
B1_2-SLN,SAMN22605224,"Cohousing set-up ""B1""",IFNAR-/-,B1_2-SLN_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store C: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_2-SLN_mRNAseq_R1.fastq.gz,B1_2-SLN_mRNAseq_R2.fastq.gz,,
B1_3-LIV,SAMN22605225,"Cohousing set-up ""B1""",IFNLR-/-,B1_3-LIV_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with outbred mouse from pet store C: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_3-LIV_mRNAseq_R1.fastq.gz,B1_3-LIV_mRNAseq_R2.fastq.gz,,
B1_3-SI,SAMN22605226,"Cohousing set-up ""B1""",IFNLR-/-,B1_3-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B1_3-SI_MAstv2_capsid_2_repA_R1.fastq.gz,B1_3-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
B1_3-SI,SAMN22605226,"Cohousing set-up ""B1""",IFNLR-/-,B1_3-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B1_3-SI_MAstv2_capsid_2_repB_R1.fastq.gz,B1_3-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
B1_3-SI,SAMN22605226,"Cohousing set-up ""B1""",IFNLR-/-,B1_3-SI_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with outbred mouse from pet store C: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_3-SI_mRNAseq_R1.fastq.gz,B1_3-SI_mRNAseq_R2.fastq.gz,,
B1_3-SI_content,SAMN22605227,"Cohousing set-up ""B1""",IFNLR-/-,B1_3-SI_content_16S,16S sequencing of SI contents from IFNLR-/- mouse cohoused with outbred mouse from pet store C,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B1_3-SI_content_16S_R1.fastq.gz,B1_3-SI_content_16S_R2.fastq.gz,,
B1_3-SLN,SAMN22605228,"Cohousing set-up ""B1""",IFNLR-/-,B1_3-SLN_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with outbred mouse from pet store C: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_3-SLN_mRNAseq_R1.fastq.gz,B1_3-SLN_mRNAseq_R2.fastq.gz,,
B1_4-LIV,SAMN22605229,"Cohousing set-up ""B1""",IFNLAR-/-,B1_4-LIV_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store C: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_4-LIV_mRNAseq_R1.fastq.gz,B1_4-LIV_mRNAseq_R2.fastq.gz,,
B1_4-SI,SAMN22605230,"Cohousing set-up ""B1""",IFNLAR-/-,B1_4-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B1_4-SI_MAstv2_capsid_2_repA_R1.fastq.gz,B1_4-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
B1_4-SI,SAMN22605230,"Cohousing set-up ""B1""",IFNLAR-/-,B1_4-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B1_4-SI_MAstv2_capsid_2_repB_R1.fastq.gz,B1_4-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
B1_4-SI,SAMN22605230,"Cohousing set-up ""B1""",IFNLAR-/-,B1_4-SI_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store C: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_4-SI_mRNAseq_R1.fastq.gz,B1_4-SI_mRNAseq_R2.fastq.gz,,
B1_4-SI_content,SAMN22605231,"Cohousing set-up ""B1""",IFNLAR-/-,B1_4-SI_content_16S,16S sequencing of SI contents from IFNLAR-/- mouse cohoused with outbred mouse from pet store C,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B1_4-SI_content_16S_R1.fastq.gz,B1_4-SI_content_16S_R2.fastq.gz,,
B1_4-SLN,SAMN22605232,"Cohousing set-up ""B1""",IFNLAR-/-,B1_4-SLN_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store C: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_4-SLN_mRNAseq_R1.fastq.gz,B1_4-SLN_mRNAseq_R2.fastq.gz,,
B1_5-LIV,SAMN22605233,"Cohousing set-up ""B1""",Pet store C,B1_5-LIV_mRNAseq,mRNAseq of outbred mouse from pet store C: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_5-LIV_mRNAseq_R1.fastq.gz,B1_5-LIV_mRNAseq_R2.fastq.gz,,
B1_5-SI,SAMN22605234,"Cohousing set-up ""B1""",Pet store C,B1_5-SI_MAstv2_capsid_1_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B1_5-SI_MAstv2_capsid_1_repA_R1.fastq.gz,B1_5-SI_MAstv2_capsid_1_repA_R2.fastq.gz,,
B1_5-SI,SAMN22605234,"Cohousing set-up ""B1""",Pet store C,B1_5-SI_MAstv2_capsid_1_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B1_5-SI_MAstv2_capsid_1_repB_R1.fastq.gz,B1_5-SI_MAstv2_capsid_1_repB_R2.fastq.gz,,
B1_5-SI,SAMN22605234,"Cohousing set-up ""B1""",Pet store C,B1_5-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B1_5-SI_MAstv2_capsid_2_repA_R1.fastq.gz,B1_5-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
B1_5-SI,SAMN22605234,"Cohousing set-up ""B1""",Pet store C,B1_5-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B1_5-SI_MAstv2_capsid_2_repB_R1.fastq.gz,B1_5-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
B1_5-SI,SAMN22605234,"Cohousing set-up ""B1""",Pet store C,B1_5-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,B1_5-SI_MAstv2_rdrp_repA_R1.fastq.gz,B1_5-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
B1_5-SI,SAMN22605234,"Cohousing set-up ""B1""",Pet store C,B1_5-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store C: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,B1_5-SI_MAstv2_rdrp_repB_R1.fastq.gz,B1_5-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
B1_5-SI,SAMN22605234,"Cohousing set-up ""B1""",Pet store C,B1_5-SI_mRNAseq,mRNAseq of outbred mouse from pet store C: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_5-SI_mRNAseq_R1.fastq.gz,B1_5-SI_mRNAseq_R2.fastq.gz,,
B1_5-SI_content,SAMN22605235,"Cohousing set-up ""B1""",Pet store C,B1_5-SI_content_16S,16S sequencing of SI contents from outbred mouse from pet store C,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B1_5-SI_content_16S_R1.fastq.gz,B1_5-SI_content_16S_R2.fastq.gz,,
B1_5-SLN,SAMN22605236,"Cohousing set-up ""B1""",Pet store C,B1_5-SLN_mRNAseq,mRNAseq of outbred mouse from pet store C: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1_5-SLN_mRNAseq_R1.fastq.gz,B1_5-SLN_mRNAseq_R2.fastq.gz,,
B1c_1-LIV,SAMN22605237,"Cohousing set-up ""B1"",  SPF control",B6,B1c_1-LIV_mRNAseq,mRNAseq of SPF B6 mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_1-LIV_mRNAseq_R1.fastq.gz,B1c_1-LIV_mRNAseq_R2.fastq.gz,,
B1c_1-SI,SAMN22605238,"Cohousing set-up ""B1"",  SPF control",B6,B1c_1-SI_mRNAseq,mRNAseq of SPF B6 mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_1-SI_mRNAseq_R1.fastq.gz,B1c_1-SI_mRNAseq_R2.fastq.gz,,
B1c_1-SI_content,SAMN22605239,"Cohousing set-up ""B1"",  SPF control",B6,B1c_1-SI_content_16S,16S sequencing of SI contents from SPF B6 mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B1c_1-SI_content_16S_R1.fastq.gz,B1c_1-SI_content_16S_R2.fastq.gz,,
B1c_1-SLN,SAMN22605240,"Cohousing set-up ""B1"",  SPF control",B6,B1c_1-SLN_mRNAseq,mRNAseq of SPF B6 mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_1-SLN_mRNAseq_R1.fastq.gz,B1c_1-SLN_mRNAseq_R2.fastq.gz,,
B1c_2-LIV,SAMN22605241,"Cohousing set-up ""B1"",  SPF control",IFNAR-/-,B1c_2-LIV_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_2-LIV_mRNAseq_R1.fastq.gz,B1c_2-LIV_mRNAseq_R2.fastq.gz,,
B1c_2-SI,SAMN22605242,"Cohousing set-up ""B1"",  SPF control",IFNAR-/-,B1c_2-SI_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_2-SI_mRNAseq_R1.fastq.gz,B1c_2-SI_mRNAseq_R2.fastq.gz,,
B1c_2-SI_content,SAMN22605243,"Cohousing set-up ""B1"",  SPF control",IFNAR-/-,B1c_2-SI_content_16S,16S sequencing of SI contents from SPF IFNAR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B1c_2-SI_content_16S_R1.fastq.gz,B1c_2-SI_content_16S_R2.fastq.gz,,
B1c_2-SLN,SAMN22605244,"Cohousing set-up ""B1"",  SPF control",IFNAR-/-,B1c_2-SLN_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_2-SLN_mRNAseq_R1.fastq.gz,B1c_2-SLN_mRNAseq_R2.fastq.gz,,
B1c_3-LIV,SAMN22605245,"Cohousing set-up ""B1"",  SPF control",IFNLR-/-,B1c_3-LIV_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_3-LIV_mRNAseq_R1.fastq.gz,B1c_3-LIV_mRNAseq_R2.fastq.gz,,
B1c_3-SI,SAMN22605246,"Cohousing set-up ""B1"",  SPF control",IFNLR-/-,B1c_3-SI_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_3-SI_mRNAseq_R1.fastq.gz,B1c_3-SI_mRNAseq_R2.fastq.gz,,
B1c_3-SI_content,SAMN22605247,"Cohousing set-up ""B1"",  SPF control",IFNLR-/-,B1c_3-SI_content_16S,16S sequencing of SI contents from SPF IFNLR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B1c_3-SI_content_16S_R1.fastq.gz,B1c_3-SI_content_16S_R2.fastq.gz,,
B1c_3-SLN,SAMN22605248,"Cohousing set-up ""B1"",  SPF control",IFNLR-/-,B1c_3-SLN_mRNAseq,mRNAseq of SPF IFNLR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_3-SLN_mRNAseq_R1.fastq.gz,B1c_3-SLN_mRNAseq_R2.fastq.gz,,
B1c_4-LIV,SAMN22605249,"Cohousing set-up ""B1"",  SPF control",IFNLAR-/-,B1c_4-LIV_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_4-LIV_mRNAseq_R1.fastq.gz,B1c_4-LIV_mRNAseq_R2.fastq.gz,,
B1c_4-SI,SAMN22605250,"Cohousing set-up ""B1"",  SPF control",IFNLAR-/-,B1c_4-SI_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_4-SI_mRNAseq_R1.fastq.gz,B1c_4-SI_mRNAseq_R2.fastq.gz,,
B1c_4-SI_content,SAMN22605251,"Cohousing set-up ""B1"",  SPF control",IFNLAR-/-,B1c_4-SI_content_16S,16S sequencing of SI contents from SPF IFNLAR-/- mouse,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B1c_4-SI_content_16S_R1.fastq.gz,B1c_4-SI_content_16S_R2.fastq.gz,,
B1c_4-SLN,SAMN22605252,"Cohousing set-up ""B1"",  SPF control",IFNLAR-/-,B1c_4-SLN_mRNAseq,mRNAseq of SPF IFNLAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B1c_4-SLN_mRNAseq_R1.fastq.gz,B1c_4-SLN_mRNAseq_R2.fastq.gz,,
B2_1-LIV,SAMN22605253,"Cohousing set-up ""B2""",B6,B2_1-LIV_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store B: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_1-LIV_mRNAseq_R1.fastq.gz,B2_1-LIV_mRNAseq_R2.fastq.gz,,
B2_1-SI,SAMN22605254,"Cohousing set-up ""B2""",B6,B2_1-SI_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store B: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_1-SI_mRNAseq_R1.fastq.gz,B2_1-SI_mRNAseq_R2.fastq.gz,,
B2_1-SI_content,SAMN22605255,"Cohousing set-up ""B2""",B6,B2_1-SI_content_16S,16S sequencing of SI contents from B6 mouse cohoused with outbred mouse from pet store B,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B2_1-SI_content_16S_R1.fastq.gz,B2_1-SI_content_16S_R2.fastq.gz,,
B2_1-SLN,SAMN22605256,"Cohousing set-up ""B2""",B6,B2_1-SLN_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store B: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_1-SLN_mRNAseq_R1.fastq.gz,B2_1-SLN_mRNAseq_R2.fastq.gz,,
B2_2-LIV,SAMN22605257,"Cohousing set-up ""B2""",IFNAR-/-,B2_2-LIV_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store B: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_2-LIV_mRNAseq_R1.fastq.gz,B2_2-LIV_mRNAseq_R2.fastq.gz,,
B2_2-SI,SAMN22605258,"Cohousing set-up ""B2""",IFNAR-/-,B2_2-SI_MAstv2_capsid_1_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B2_2-SI_MAstv2_capsid_1_repA_R1.fastq.gz,B2_2-SI_MAstv2_capsid_1_repA_R2.fastq.gz,,
B2_2-SI,SAMN22605258,"Cohousing set-up ""B2""",IFNAR-/-,B2_2-SI_MAstv2_capsid_1_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B2_2-SI_MAstv2_capsid_1_repB_R1.fastq.gz,B2_2-SI_MAstv2_capsid_1_repB_R2.fastq.gz,,
B2_2-SI,SAMN22605258,"Cohousing set-up ""B2""",IFNAR-/-,B2_2-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B2_2-SI_MAstv2_capsid_2_repA_R1.fastq.gz,B2_2-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
B2_2-SI,SAMN22605258,"Cohousing set-up ""B2""",IFNAR-/-,B2_2-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B2_2-SI_MAstv2_capsid_2_repB_R1.fastq.gz,B2_2-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
B2_2-SI,SAMN22605258,"Cohousing set-up ""B2""",IFNAR-/-,B2_2-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,B2_2-SI_MAstv2_rdrp_repA_R1.fastq.gz,B2_2-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
B2_2-SI,SAMN22605258,"Cohousing set-up ""B2""",IFNAR-/-,B2_2-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,B2_2-SI_MAstv2_rdrp_repB_R1.fastq.gz,B2_2-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
B2_2-SI,SAMN22605258,"Cohousing set-up ""B2""",IFNAR-/-,B2_2-SI_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_2-SI_mRNAseq_R1.fastq.gz,B2_2-SI_mRNAseq_R2.fastq.gz,,
B2_2-SI_content,SAMN22605259,"Cohousing set-up ""B2""",IFNAR-/-,B2_2-SI_content_16S,16S sequencing of SI contents from IFNAR-/- mouse cohoused with outbred mouse from pet store B,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B2_2-SI_content_16S_R1.fastq.gz,B2_2-SI_content_16S_R2.fastq.gz,,
B2_2-SLN,SAMN22605260,"Cohousing set-up ""B2""",IFNAR-/-,B2_2-SLN_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store B: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_2-SLN_mRNAseq_R1.fastq.gz,B2_2-SLN_mRNAseq_R2.fastq.gz,,
B2_3-LIV,SAMN22605261,"Cohousing set-up ""B2""",IFNLR-/-,B2_3-LIV_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with outbred mouse from pet store B: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_3-LIV_mRNAseq_R1.fastq.gz,B2_3-LIV_mRNAseq_R2.fastq.gz,,
B2_3-SI,SAMN22605262,"Cohousing set-up ""B2""",IFNLR-/-,B2_3-SI_MAstv2_capsid_1_repA,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B2_3-SI_MAstv2_capsid_1_repA_R1.fastq.gz,B2_3-SI_MAstv2_capsid_1_repA_R2.fastq.gz,,
B2_3-SI,SAMN22605262,"Cohousing set-up ""B2""",IFNLR-/-,B2_3-SI_MAstv2_capsid_1_repB,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B2_3-SI_MAstv2_capsid_1_repB_R1.fastq.gz,B2_3-SI_MAstv2_capsid_1_repB_R2.fastq.gz,,
B2_3-SI,SAMN22605262,"Cohousing set-up ""B2""",IFNLR-/-,B2_3-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B2_3-SI_MAstv2_capsid_2_repA_R1.fastq.gz,B2_3-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
B2_3-SI,SAMN22605262,"Cohousing set-up ""B2""",IFNLR-/-,B2_3-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNLR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B2_3-SI_MAstv2_capsid_2_repB_R1.fastq.gz,B2_3-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
B2_3-SI,SAMN22605262,"Cohousing set-up ""B2""",IFNLR-/-,B2_3-SI_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_3-SI_mRNAseq_R1.fastq.gz,B2_3-SI_mRNAseq_R2.fastq.gz,,
B2_3-SI_content,SAMN22605263,"Cohousing set-up ""B2""",IFNLR-/-,B2_3-SI_content_16S,16S sequencing of SI contents from IFNLR-/- mouse cohoused with outbred mouse from pet store B,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B2_3-SI_content_16S_R1.fastq.gz,B2_3-SI_content_16S_R2.fastq.gz,,
B2_3-SLN,SAMN22605264,"Cohousing set-up ""B2""",IFNLR-/-,B2_3-SLN_mRNAseq,mRNAseq of IFNLR-/- mus musculus cohoused with outbred mouse from pet store B: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_3-SLN_mRNAseq_R1.fastq.gz,B2_3-SLN_mRNAseq_R2.fastq.gz,,
B2_4-LIV,SAMN22605265,"Cohousing set-up ""B2""",IFNLAR-/-,B2_4-LIV_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store B: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_4-LIV_mRNAseq_R1.fastq.gz,B2_4-LIV_mRNAseq_R2.fastq.gz,,
B2_4-SI,SAMN22605266,"Cohousing set-up ""B2""",IFNLAR-/-,B2_4-SI_MAstv2_capsid_1_repA,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B2_4-SI_MAstv2_capsid_1_repA_R1.fastq.gz,B2_4-SI_MAstv2_capsid_1_repA_R2.fastq.gz,,
B2_4-SI,SAMN22605266,"Cohousing set-up ""B2""",IFNLAR-/-,B2_4-SI_MAstv2_capsid_1_repB,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B2_4-SI_MAstv2_capsid_1_repB_R1.fastq.gz,B2_4-SI_MAstv2_capsid_1_repB_R2.fastq.gz,,
B2_4-SI,SAMN22605266,"Cohousing set-up ""B2""",IFNLAR-/-,B2_4-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B2_4-SI_MAstv2_capsid_2_repA_R1.fastq.gz,B2_4-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
B2_4-SI,SAMN22605266,"Cohousing set-up ""B2""",IFNLAR-/-,B2_4-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B2_4-SI_MAstv2_capsid_2_repB_R1.fastq.gz,B2_4-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
B2_4-SI,SAMN22605266,"Cohousing set-up ""B2""",IFNLAR-/-,B2_4-SI_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store B: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_4-SI_mRNAseq_R1.fastq.gz,B2_4-SI_mRNAseq_R2.fastq.gz,,
B2_4-SI_content,SAMN22605267,"Cohousing set-up ""B2""",IFNLAR-/-,B2_4-SI_content_16S,16S sequencing of SI contents from IFNLAR-/- mouse cohoused with outbred mouse from pet store B,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B2_4-SI_content_16S_R1.fastq.gz,B2_4-SI_content_16S_R2.fastq.gz,,
B2_4-SLN,SAMN22605268,"Cohousing set-up ""B2""",IFNLAR-/-,B2_4-SLN_mRNAseq,mRNAseq of IFNLAR-/- mus musculus cohoused with outbred mouse from pet store B: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_4-SLN_mRNAseq_R1.fastq.gz,B2_4-SLN_mRNAseq_R2.fastq.gz,,
B2_5-LIV,SAMN22605269,"Cohousing set-up ""B2""",Pet store B,B2_5-LIV_mRNAseq,mRNAseq of outbred mouse from pet store B: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_5-LIV_mRNAseq_R1.fastq.gz,B2_5-LIV_mRNAseq_R2.fastq.gz,,
B2_5-SI,SAMN22605270,"Cohousing set-up ""B2""",Pet store B,B2_5-SI_MAstv2_capsid_1_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B2_5-SI_MAstv2_capsid_1_repA_R1.fastq.gz,B2_5-SI_MAstv2_capsid_1_repA_R2.fastq.gz,,
B2_5-SI,SAMN22605270,"Cohousing set-up ""B2""",Pet store B,B2_5-SI_MAstv2_capsid_1_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 4261-4695 (vs reference seq MF175073)",fastq,B2_5-SI_MAstv2_capsid_1_repB_R1.fastq.gz,B2_5-SI_MAstv2_capsid_1_repB_R2.fastq.gz,,
B2_5-SI,SAMN22605270,"Cohousing set-up ""B2""",Pet store B,B2_5-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B2_5-SI_MAstv2_capsid_2_repA_R1.fastq.gz,B2_5-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
B2_5-SI,SAMN22605270,"Cohousing set-up ""B2""",Pet store B,B2_5-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,B2_5-SI_MAstv2_capsid_2_repB_R1.fastq.gz,B2_5-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
B2_5-SI,SAMN22605270,"Cohousing set-up ""B2""",Pet store B,B2_5-SI_MAstv2_rdrp_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,B2_5-SI_MAstv2_rdrp_repA_R1.fastq.gz,B2_5-SI_MAstv2_rdrp_repA_R2.fastq.gz,,
B2_5-SI,SAMN22605270,"Cohousing set-up ""B2""",Pet store B,B2_5-SI_MAstv2_rdrp_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store B: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF1b, bp 2660-3280 (vs reference seq MF175073)",fastq,B2_5-SI_MAstv2_rdrp_repB_R1.fastq.gz,B2_5-SI_MAstv2_rdrp_repB_R2.fastq.gz,,
B2_5-SI,SAMN22605270,"Cohousing set-up ""B2""",Pet store B,B2_5-SI_mRNAseq,mRNAseq of outbred mouse from pet store B: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_5-SI_mRNAseq_R1.fastq.gz,B2_5-SI_mRNAseq_R2.fastq.gz,,
B2_5-SI_content,SAMN22605271,"Cohousing set-up ""B2""",Pet store B,B2_5-SI_content_16S,16S sequencing of SI contents from outbred mouse from pet store B,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Amplification of V4 variable region, sequencing with 2x300 bp paired end reads",fastq,B2_5-SI_content_16S_R1.fastq.gz,B2_5-SI_content_16S_R2.fastq.gz,,
B2_5-SLN,SAMN22605272,"Cohousing set-up ""B2""",Pet store B,B2_5-SLN_mRNAseq,mRNAseq of outbred mouse from pet store B: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,B2_5-SLN_mRNAseq_R1.fastq.gz,B2_5-SLN_mRNAseq_R2.fastq.gz,,
C1_1-LIV,SAMN22605273,"Cohousing set-up ""C1""",B6,C1_1-LIV_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1_1-LIV_mRNAseq_R1.fastq.gz,C1_1-LIV_mRNAseq_R2.fastq.gz,,
C1_1-SI,SAMN22605274,"Cohousing set-up ""C1""",B6,C1_1-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with outbred mouse from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,C1_1-SI_MAstv2_capsid_2_repA_R1.fastq.gz,C1_1-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
C1_1-SI,SAMN22605274,"Cohousing set-up ""C1""",B6,C1_1-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of B6 mus musculus cohoused with outbred mouse from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,C1_1-SI_MAstv2_capsid_2_repB_R1.fastq.gz,C1_1-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
C1_1-SI,SAMN22605274,"Cohousing set-up ""C1""",B6,C1_1-SI_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1_1-SI_mRNAseq_R1.fastq.gz,C1_1-SI_mRNAseq_R2.fastq.gz,,
C1_1-SLN,SAMN22605275,"Cohousing set-up ""C1""",B6,C1_1-SLN_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1_1-SLN_mRNAseq_R1.fastq.gz,C1_1-SLN_mRNAseq_R2.fastq.gz,,
C1_2-LIV,SAMN22605276,"Cohousing set-up ""C1""",IFNAR-/-,C1_2-LIV_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1_2-LIV_mRNAseq_R1.fastq.gz,C1_2-LIV_mRNAseq_R2.fastq.gz,,
C1_2-SI,SAMN22605277,"Cohousing set-up ""C1""",IFNAR-/-,C1_2-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with outbred mouse from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,C1_2-SI_MAstv2_capsid_2_repA_R1.fastq.gz,C1_2-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
C1_2-SI,SAMN22605277,"Cohousing set-up ""C1""",IFNAR-/-,C1_2-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of IFNAR-/- mus musculus cohoused with outbred mouse from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,C1_2-SI_MAstv2_capsid_2_repB_R1.fastq.gz,C1_2-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
C1_2-SI,SAMN22605277,"Cohousing set-up ""C1""",IFNAR-/-,C1_2-SI_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1_2-SI_mRNAseq_R1.fastq.gz,C1_2-SI_mRNAseq_R2.fastq.gz,,
C1_2-SLN,SAMN22605278,"Cohousing set-up ""C1""",IFNAR-/-,C1_2-SLN_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1_2-SLN_mRNAseq_R1.fastq.gz,C1_2-SLN_mRNAseq_R2.fastq.gz,,
C1_3-LIV,SAMN22605279,"Cohousing set-up ""C1""",Pet store A,C1_3-LIV_mRNAseq,mRNAseq of outbred mouse from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1_3-LIV_mRNAseq_R1.fastq.gz,C1_3-LIV_mRNAseq_R2.fastq.gz,,
C1_3-SI,SAMN22605280,"Cohousing set-up ""C1""",Pet store A,C1_3-SI_MAstv2_capsid_2_repA,Murine astrovirus amplicon sequencing of outbred mouse from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,C1_3-SI_MAstv2_capsid_2_repA_R1.fastq.gz,C1_3-SI_MAstv2_capsid_2_repA_R2.fastq.gz,,
C1_3-SI,SAMN22605280,"Cohousing set-up ""C1""",Pet store A,C1_3-SI_MAstv2_capsid_2_repB,Murine astrovirus amplicon sequencing of outbred mouse from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting Murine Astrovirus 2 ORF2, bp 5395-5980 (vs reference seq MF175073)",fastq,C1_3-SI_MAstv2_capsid_2_repB_R1.fastq.gz,C1_3-SI_MAstv2_capsid_2_repB_R2.fastq.gz,,
C1_3-SI,SAMN22605280,"Cohousing set-up ""C1""",Pet store A,C1_3-SI_mRNAseq,mRNAseq of outbred mouse from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1_3-SI_mRNAseq_R1.fastq.gz,C1_3-SI_mRNAseq_R2.fastq.gz,,
C1_3-SLN,SAMN22605281,"Cohousing set-up ""C1""",Pet store A,C1_3-SLN_mRNAseq,mRNAseq of outbred mouse from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1_3-SLN_mRNAseq_R1.fastq.gz,C1_3-SLN_mRNAseq_R2.fastq.gz,,
C1c_1-LIV,SAMN22605282,"Cohousing set-up ""C1"", SPF control",B6,C1c_1-LIV_mRNAseq_round1,mRNAseq of SPF B6 mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1c_1-LIV_mRNAseq_round_1_R1.fastq.gz,C1c_1-LIV_mRNAseq_round_1_R2.fastq.gz,,
C1c_1-LIV,SAMN22605282,"Cohousing set-up ""C1"", SPF control",B6,C1c_1-LIV_mRNAseq_round2,mRNAseq of SPF B6 mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,C1c_1-LIV_mRNAseq_round_2_R1.fastq.gz,C1c_1-LIV_mRNAseq_round_2_R2.fastq.gz,,
C1c_1-SI,SAMN22605283,"Cohousing set-up ""C1"", SPF control",B6,C1c_1-SI_mRNAseq_round1,mRNAseq of SPF B6 mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1c_1-SI_mRNAseq_round_1_R1.fastq.gz,C1c_1-SI_mRNAseq_round_1_R2.fastq.gz,,
C1c_1-SI,SAMN22605283,"Cohousing set-up ""C1"", SPF control",B6,C1c_1-SI_mRNAseq_round2,mRNAseq of SPF B6 mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,C1c_1-SI_mRNAseq_round_2_R1.fastq.gz,C1c_1-SI_mRNAseq_round_2_R2.fastq.gz,,
C1c_1-SLN,SAMN22605284,"Cohousing set-up ""C1"", SPF control",B6,C1c_1-SLN_mRNAseq,mRNAseq of SPF B6 mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1c_1-SLN_mRNAseq_R1.fastq.gz,C1c_1-SLN_mRNAseq_R2.fastq.gz,,
C1c_2-LIV,SAMN22605285,"Cohousing set-up ""C1"", SPF control",IFNAR-/-,C1c_2-LIV_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1c_2-LIV_mRNAseq_R1.fastq.gz,C1c_2-LIV_mRNAseq_R2.fastq.gz,,
C1c_2-SI,SAMN22605286,"Cohousing set-up ""C1"", SPF control",IFNAR-/-,C1c_2-SI_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1c_2-SI_mRNAseq_R1.fastq.gz,C1c_2-SI_mRNAseq_R2.fastq.gz,,
C1c_2-SLN,SAMN22605287,"Cohousing set-up ""C1"", SPF control",IFNAR-/-,C1c_2-SLN_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C1c_2-SLN_mRNAseq_R1.fastq.gz,C1c_2-SLN_mRNAseq_R2.fastq.gz,,
C2_1-LIV,SAMN22605288,"Cohousing set-up ""C2""",B6,C2_1-LIV_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2_1-LIV_mRNAseq_R1.fastq.gz,C2_1-LIV_mRNAseq_R2.fastq.gz,,
C2_1-SI,SAMN22605289,"Cohousing set-up ""C2""",B6,C2_1-SI_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2_1-SI_mRNAseq_R1.fastq.gz,C2_1-SI_mRNAseq_R2.fastq.gz,,
C2_1-SLN,SAMN22605290,"Cohousing set-up ""C2""",B6,C2_1-SLN_mRNAseq,mRNAseq of B6 mus musculus cohoused with outbred mouse from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2_1-SLN_mRNAseq_R1.fastq.gz,C2_1-SLN_mRNAseq_R2.fastq.gz,,
C2_2-LIV,SAMN22605291,"Cohousing set-up ""C2""",IFNAR-/-,C2_2-LIV_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2_2-LIV_mRNAseq_R1.fastq.gz,C2_2-LIV_mRNAseq_R2.fastq.gz,,
C2_2-SI,SAMN22605292,"Cohousing set-up ""C2""",IFNAR-/-,C2_2-SI_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2_2-SI_mRNAseq_R1.fastq.gz,C2_2-SI_mRNAseq_R2.fastq.gz,,
C2_2-SLN,SAMN22605293,"Cohousing set-up ""C2""",IFNAR-/-,C2_2-SLN_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with outbred mouse from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2_2-SLN_mRNAseq_R1.fastq.gz,C2_2-SLN_mRNAseq_R2.fastq.gz,,
C2_3-LIV,SAMN22605294,"Cohousing set-up ""C2""",Pet store A,C2_3-LIV_mRNAseq,mRNAseq of outbred mouse from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2_3-LIV_mRNAseq_R1.fastq.gz,C2_3-LIV_mRNAseq_R2.fastq.gz,,
C2_3-SI,SAMN22605295,"Cohousing set-up ""C2""",Pet store A,C2_3-SI_mRNAseq,mRNAseq of outbred mouse from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2_3-SI_mRNAseq_R1.fastq.gz,C2_3-SI_mRNAseq_R2.fastq.gz,,
C2_3-SLN,SAMN22605296,"Cohousing set-up ""C2""",Pet store A,C2_3-SLN_mRNAseq,mRNAseq of outbred mouse from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2_3-SLN_mRNAseq_R1.fastq.gz,C2_3-SLN_mRNAseq_R2.fastq.gz,,
C2c_1-LIV,SAMN22605297,"Cohousing set up ""C2"", SPF control",B6,C2c_1-LIV_mRNAseq_round1,mRNAseq of SPF B6 mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2c_1-LIV_mRNAseq_round_1_R1.fastq.gz,C2c_1-LIV_mRNAseq_round_1_R2.fastq.gz,,
C2c_1-LIV,SAMN22605297,"Cohousing set up ""C2"", SPF control",B6,C2c_1-LIV_mRNAseq_round2,mRNAseq of SPF B6 mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,C2c_1-LIV_mRNAseq_round_2_R1.fastq.gz,C2c_1-LIV_mRNAseq_round_2_R2.fastq.gz,,
C2c_1-SI,SAMN22605298,"Cohousing set up ""C2"", SPF control",B6,C2c_1-SI_mRNAseq_round1,mRNAseq of SPF B6 mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2c_1-SI_mRNAseq_round_1_R1.fastq.gz,C2c_1-SI_mRNAseq_round_1_R2.fastq.gz,,
C2c_1-SI,SAMN22605298,"Cohousing set up ""C2"", SPF control",B6,C2c_1-SI_mRNAseq_round2,mRNAseq of SPF B6 mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,C2c_1-SI_mRNAseq_round_2_R1.fastq.gz,C2c_1-SI_mRNAseq_round_2_R2.fastq.gz,,
C2c_1-SLN,SAMN22605299,"Cohousing set up ""C2"", SPF control",B6,C2c_1-SLN_mRNAseq,mRNAseq of SPF B6 mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2c_1-SLN_mRNAseq_R1.fastq.gz,C2c_1-SLN_mRNAseq_R2.fastq.gz,,
C2c_2-LIV,SAMN22605300,"Cohousing set up ""C2"", SPF control",IFNAR-/-,C2c_2-LIV_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2c_2-LIV_mRNAseq_R1.fastq.gz,C2c_2-LIV_mRNAseq_R2.fastq.gz,,
C2c_2-SI,SAMN22605301,"Cohousing set up ""C2"", SPF control",IFNAR-/-,C2c_2-SI_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2c_2-SI_mRNAseq_R1.fastq.gz,C2c_2-SI_mRNAseq_R2.fastq.gz,,
C2c_2-SLN,SAMN22605302,"Cohousing set up ""C2"", SPF control",IFNAR-/-,C2c_2-SLN_mRNAseq,mRNAseq of SPF IFNAR-/- mouse: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,C2c_2-SLN_mRNAseq_R1.fastq.gz,C2c_2-SLN_mRNAseq_R2.fastq.gz,,
D1_1-LIV,SAMN22605303,"Cohousing set up ""D1""",B6,D1_1-LIV_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D1_1-LIV_mRNAseq_R1.fastq.gz,D1_1-LIV_mRNAseq_R2.fastq.gz,,
D1_1-SI,SAMN22605304,"Cohousing set up ""D1""",B6,D1_1-SI_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D1_1-SI_mRNAseq_R1.fastq.gz,D1_1-SI_mRNAseq_R2.fastq.gz,,
D1_1-SLN,SAMN22605305,"Cohousing set up ""D1""",B6,D1_1-SLN_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D1_1-SLN_mRNAseq_R1.fastq.gz,D1_1-SLN_mRNAseq_R2.fastq.gz,,
D1_2-LIV,SAMN22605306,"Cohousing set up ""D1""",IFNAR-/-,D1_2-LIV_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D1_2-LIV_mRNAseq_R1.fastq.gz,D1_2-LIV_mRNAseq_R2.fastq.gz,,
D1_2-SI,SAMN22605307,"Cohousing set up ""D1""",IFNAR-/-,"D1_2-SI_mRNAseq, round 1",mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D1_2-SI_mRNAseq_round_1_R1.fastq.gz,D1_2-SI_mRNAseq_round_1_R2.fastq.gz,,
D1_2-SI,SAMN22605307,"Cohousing set up ""D1""",IFNAR-/-,"D1_2-SI_mRNAseq, round 2",mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,D1_2-SI_mRNAseq_round_2_R1.fastq.gz,D1_2-SI_mRNAseq_round_2_R2.fastq.gz,,
D1_2-SLN,SAMN22605308,"Cohousing set up ""D1""",IFNAR-/-,D1_2-SLN_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D1_2-SLN_mRNAseq_R1.fastq.gz,D1_2-SLN_mRNAseq_R2.fastq.gz,,
D1_3-LIV,SAMN22605309,"Cohousing set up ""D1""",Pet store A (1 of 2),D1_3-LIV_mRNAseq,"mRNAseq of outbred mouse from pet store A: liver, mouse 1",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D1_3-LIV_mRNAseq_R1.fastq.gz,D1_3-LIV_mRNAseq_R2.fastq.gz,,
D1_3-SI,SAMN22605310,"Cohousing set up ""D1""",Pet store A (1 of 2),D1_3-SI_mRNAseq,"mRNAseq of outbred mouse from pet store A: small intestine, mouse 1",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D1_3-SI_mRNAseq_R1.fastq.gz,D1_3-SI_mRNAseq_R2.fastq.gz,,
D1_3-SLN,SAMN22605311,"Cohousing set up ""D1""",Pet store A (1 of 2),D1_3-SLN_mRNAseq,"mRNAseq of outbred mouse from pet store A: spleen and lymph nodes, mouse 1",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,D1_3-SLN_mRNAseq_R1.fastq.gz,D1_3-SLN_mRNAseq_R2.fastq.gz,,
D1_4-LIV,SAMN22605312,"Cohousing set up ""D1""",Pet store A (2 of 2),D1_4-LIV_mRNAseq,"mRNAseq of outbred mouse from pet store A: liver, mouse 2",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D1_4-LIV_mRNAseq_R1.fastq.gz,D1_4-LIV_mRNAseq_R2.fastq.gz,,
D1_4-SI,SAMN22605313,"Cohousing set up ""D1""",Pet store A (2 of 2),D1_4-SI_mRNAseq,"mRNAseq of outbred mouse from pet store A: small intestine, mouse 2",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D1_4-SI_mRNAseq_R1.fastq.gz,D1_4-SI_mRNAseq_R2.fastq.gz,,
D1_4-SLN,SAMN22605314,"Cohousing set up ""D1""",Pet store A (2 of 2),D1_4-SLN_mRNAseq,"mRNAseq of outbred mouse from pet store A: spleen and lymph nodes, mouse 2",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,D1_4-SLN_mRNAseq_R1.fastq.gz,D1_4-SLN_mRNAseq_R2.fastq.gz,,
D2_1-LIV,SAMN22605315,"Cohousing set up ""D2""",B6,D2_1-LIV_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D2_1-LIV_mRNAseq_R1.fastq.gz,D2_1-LIV_mRNAseq_R2.fastq.gz,,
D2_1-SI,SAMN22605316,"Cohousing set up ""D2""",B6,D2_1-SI_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D2_1-SI_mRNAseq_R1.fastq.gz,D2_1-SI_mRNAseq_R2.fastq.gz,,
D2_1-SLN,SAMN22605317,"Cohousing set up ""D2""",B6,D2_1-SLN_mRNAseq,mRNAseq of B6 mus musculus cohoused with 2 outbred mice from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D2_1-SLN_mRNAseq_R1.fastq.gz,D2_1-SLN_mRNAseq_R2.fastq.gz,,
D2_2-LIV,SAMN22605318,"Cohousing set up ""D2""",IFNAR-/-,D2_2-LIV_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D2_2-LIV_mRNAseq_R1.fastq.gz,D2_2-LIV_mRNAseq_R2.fastq.gz,,
D2_2-SI,SAMN22605319,"Cohousing set up ""D2""",IFNAR-/-,D2_2-SI_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D2_2-SI_mRNAseq_R1.fastq.gz,D2_2-SI_mRNAseq_R2.fastq.gz,,
D2_2-SLN,SAMN22605320,"Cohousing set up ""D2""",IFNAR-/-,D2_2-SLN_mRNAseq,mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice from pet store A: spleen and lymph nodes,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D2_2-SLN_mRNAseq_R1.fastq.gz,D2_2-SLN_mRNAseq_R2.fastq.gz,,
D2_3-LIV,SAMN22605321,"Cohousing set up ""D2""",Pet store A (1 of 2),D2_3-LIV_mRNAseq,"mRNAseq of outbred mouse from pet store A: liver, mouse 1",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D2_3-LIV_mRNAseq_R1.fastq.gz,D2_3-LIV_mRNAseq_R2.fastq.gz,,
D2_3-SI,SAMN22605322,"Cohousing set up ""D2""",Pet store A (1 of 2),D2_3-SI_mRNAseq,"mRNAseq of outbred mouse from pet store A: small intestine, mouse 1",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D2_3-SI_mRNAseq_R1.fastq.gz,D2_3-SI_mRNAseq_R2.fastq.gz,,
D2_3-SLN,SAMN22605323,"Cohousing set up ""D2""",Pet store A (1 of 2),D2_3-SLN_mRNAseq,"mRNAseq of outbred mouse from pet store A: spleen and lymph nodes, mouse 1",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D2_3-SLN_mRNAseq_R1.fastq.gz,D2_3-SLN_mRNAseq_R2.fastq.gz,,
D2_4-LIV,SAMN22605324,"Cohousing set up ""D2""",Pet store A (2 of 2),D2_4-LIV_mRNAseq,"mRNAseq of outbred mouse from pet store A: liver, mouse 2",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D2_4-LIV_mRNAseq_R1.fastq.gz,D2_4-LIV_mRNAseq_R2.fastq.gz,,
D2_4-SI,SAMN22605325,"Cohousing set up ""D2""",Pet store A (2 of 2),D2_4-SI_mRNAseq,"mRNAseq of outbred mouse from pet store A: small intestine, mouse 2",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina MiSeq,"PolyA selection, 2x50 bp paired end reads",fastq,D2_4-SI_mRNAseq_R1.fastq.gz,D2_4-SI_mRNAseq_R2.fastq.gz,,
D2_4-SLN,SAMN22605326,"Cohousing set up ""D2""",Pet store A (2 of 2),D2_4-SLN_mRNAseq,"mRNAseq of outbred mouse from pet store A: spleen and lymph nodes, mouse 2",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,D2_4-SLN_mRNAseq_R1.fastq.gz,D2_4-SLN_mRNAseq_R2.fastq.gz,,
E1_1-SI,SAMN22605327,"Cohousing set up ""E1""",B6,E1_1-SI_mRNAseq,"mRNAseq of B6 mus musculus cohoused with 2 outbred mice, from pet store A (N=1) and B (N=1): small intestine",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,E1_1-SI_mRNAseq_R1.fastq.gz,E1_1-SI_mRNAseq_R2.fastq.gz,,
E1_2-SI,SAMN22605328,"Cohousing set up ""E1""",IFNAR-/-,E1_2-SI_mRNAseq,"mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice, from pet store A (N=1) and B (N=1): small intestine",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,E1_2-SI_mRNAseq_R1.fastq.gz,E1_2-SI_mRNAseq_R2.fastq.gz,,
E1_3-SI,SAMN22605329,"Cohousing set up ""E1""",Pet store A,E1_3-SI_mRNAseq,mRNAseq of outbred mouse from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,E1_3-SI_mRNAseq_R1.fastq.gz,E1_3-SI_mRNAseq_R2.fastq.gz,,
E1_4-SI,SAMN22605330,"Cohousing set up ""E1""",Pet store B,E1_4-SI_mRNAseq,mRNAseq of outbred mouse from pet store B: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,E1_4-SI_mRNAseq_R1.fastq.gz,E1_4-SI_mRNAseq_R2.fastq.gz,,
E2_1-SI,SAMN22605331,"Cohousing set up ""E2""",B6,E2_1-SI_mRNAseq,"mRNAseq of B6 mus musculus cohoused with 2 outbred mice, from pet store A (N=1) and B (N=1): small intestine",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,E2_1-SI_mRNAseq_R1.fastq.gz,E2_1-SI_mRNAseq_R2.fastq.gz,,
E2_2-SI,SAMN22605332,"Cohousing set up ""E2""",IFNAR-/-,E2_2-SI_mRNAseq,"mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice, from pet store A (N=1) and B (N=1): small intestine",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,E2_2-SI_mRNAseq_R1.fastq.gz,E2_2-SI_mRNAseq_R2.fastq.gz,,
E2_3-SI,SAMN22605333,"Cohousing set up ""E2""",Pet store A,E2_3-SI_mRNAseq,mRNAseq of outbred mouse from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,E2_3-SI_mRNAseq_R1.fastq.gz,E2_3-SI_mRNAseq_R2.fastq.gz,,
E2_4-SI,SAMN22605334,"Cohousing set up ""E2""",Pet store B,E2_4-SI_mRNAseq,mRNAseq of outbred mouse from pet store B: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,E2_4-SI_mRNAseq_R1.fastq.gz,E2_4-SI_mRNAseq_R2.fastq.gz,,
F1_1-SI,SAMN22605335,"Cohousing set up ""F1""",B6,F1_1-SI_mRNAseq,"mRNAseq of B6 mus musculus cohoused with 2 outbred mice, from pet store A (N=1) and B (N=1): small intestine",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,F1_1-SI_mRNAseq_R1.fastq.gz,F1_1-SI_mRNAseq_R2.fastq.gz,,
F1_2-SI,SAMN22605336,"Cohousing set up ""F1""",IFNAR-/-,F1_2-SI_mRNAseq,"mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice, from pet store A (N=1) and B (N=1): small intestine",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,F1_2-SI_mRNAseq_R1.fastq.gz,F1_2-SI_mRNAseq_R2.fastq.gz,,
F1_3-SI,SAMN22605337,"Cohousing set up ""F1""",Pet store A + ABX,F1_3-SI_mRNAseq,mRNAseq of outbred mouse from pet store A treated with antibiotics: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,F1_3-SI_mRNAseq_R1.fastq.gz,F1_3-SI_mRNAseq_R2.fastq.gz,,
F1_4-SI,SAMN22605338,"Cohousing set up ""F1""",Pet store B + ABX,F1_4-SI_mRNAseq,mRNAseq of outbred mouse from pet store B treated with antibiotics: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,F1_4-SI_mRNAseq_R1.fastq.gz,F1_4-SI_mRNAseq_R2.fastq.gz,,
F2_1-SI,SAMN22605339,"Cohousing set up ""F2""",B6,F2_1-SI_mRNAseq,"mRNAseq of B6 mus musculus cohoused with 2 outbred mice, from pet store A (N=1) and B (N=1): small intestine",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,F2_1-SI_mRNAseq_R1.fastq.gz,F2_1-SI_mRNAseq_R2.fastq.gz,,
F2_2-SI,SAMN22605340,"Cohousing set up ""F2""",IFNAR-/-,F2_2-SI_mRNAseq,"mRNAseq of IFNAR-/- mus musculus cohoused with 2 outbred mice, from pet store A (N=1) and B (N=1): small intestine",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,F2_2-SI_mRNAseq_R1.fastq.gz,F2_2-SI_mRNAseq_R2.fastq.gz,,
F2_3-SI,SAMN22605341,"Cohousing set up ""F2""",Pet store A + ABX,F2_3-SI_mRNAseq,mRNAseq of outbred mouse from pet store A treated with antibiotics: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,F2_3-SI_mRNAseq_R1.fastq.gz,F2_3-SI_mRNAseq_R2.fastq.gz,,
F2_4-SI,SAMN22605342,"Cohousing set up ""F2""",Pet store B + ABX,F2_4-SI_mRNAseq,mRNAseq of outbred mouse from pet store B treated with antibiotics: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x50 bp paired end reads",fastq,F2_4-SI_mRNAseq_R1.fastq.gz,F2_4-SI_mRNAseq_R2.fastq.gz,,
R1-LIV,SAMN22605344,Rat fomite experiment,Pet store A rat,R1-LIV_mRNAseq,"mRNAseq of outbred rat from pet store A: liver, rat 1",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R1-LIV_mRNAseq_R1.fastq.gz,R1-LIV_mRNAseq_R2.fastq.gz,,
R1-SI,SAMN22605343,Rat fomite experiment,Pet store A rat,R1-SI_Rat_astro_rdrp_1_repA,"Rat astrovirus amplicon sequencing of outbred rat from pet store A: small intestine, rat 1",AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3191-3723 (vs reference seq KT946731)",fastq,R1-SI_Rat_astro_rdrp_1_repA_R1.fastq.gz,R1-SI_Rat_astro_rdrp_1_repA_R2.fastq.gz,,
R1-SI,SAMN22605343,Rat fomite experiment,Pet store A rat,R1-SI_Rat_astro_rdrp_1_repB,"Rat astrovirus amplicon sequencing of outbred rat from pet store A: small intestine, rat 1",AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3191-3723 (vs reference seq KT946731)",fastq,R1-SI_Rat_astro_rdrp_1_repB_R1.fastq.gz,R1-SI_Rat_astro_rdrp_1_repB_R2.fastq.gz,,
R1-SI,SAMN22605343,Rat fomite experiment,Pet store A rat,R1-SI_Rat_astro_rdrp_2_repA,"Rat astrovirus amplicon sequencing of outbred rat from pet store A: small intestine, rat 1",AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3669-4110 (vs reference seq KT946731)",fastq,R1-SI_Rat_astro_rdrp_2_repA_R1.fastq.gz,R1-SI_Rat_astro_rdrp_2_repA_R2.fastq.gz,,
R1-SI,SAMN22605343,Rat fomite experiment,Pet store A rat,R1-SI_Rat_astro_rdrp_2_repB,"Rat astrovirus amplicon sequencing of outbred rat from pet store A: small intestine, rat 1",AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3669-4110 (vs reference seq KT946731)",fastq,R1-SI_Rat_astro_rdrp_2_repB_R1.fastq.gz,R1-SI_Rat_astro_rdrp_2_repB_R2.fastq.gz,,
R1-SI,SAMN22605343,Rat fomite experiment,Pet store A rat,R1-SI_mRNAseq,"mRNAseq of outbred rat from pet store A: small intestine, rat 1",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R1-SI_mRNAseq_R1.fastq.gz,R1-SI_mRNAseq_R2.fastq.gz,,
R2-LIV,SAMN22605346,Rat fomite experiment,Pet store B rat,R2-LIV_mRNAseq,"mRNAseq of outbred rat from pet store A: liver, rat 2",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R2-LIV_mRNAseq_R1.fastq.gz,R2-LIV_mRNAseq_R2.fastq.gz,,
R2-SI,SAMN22605345,Rat fomite experiment,Pet store B rat,R2-SI_Rat_astro_rdrp_1_repA,"Rat astrovirus amplicon sequencing of outbred rat from pet store A: small intestine, rat 2",AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3191-3723 (vs reference seq KT946731)",fastq,R2-SI_Rat_astro_rdrp_1_repA_R1.fastq.gz,R2-SI_Rat_astro_rdrp_1_repA_R2.fastq.gz,,
R2-SI,SAMN22605345,Rat fomite experiment,Pet store B rat,R2-SI_Rat_astro_rdrp_1_repB,"Rat astrovirus amplicon sequencing of outbred rat from pet store A: small intestine, rat 2",AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3191-3723 (vs reference seq KT946731)",fastq,R2-SI_Rat_astro_rdrp_1_repB_R1.fastq.gz,R2-SI_Rat_astro_rdrp_1_repB_R2.fastq.gz,,
R2-SI,SAMN22605345,Rat fomite experiment,Pet store B rat,R2-SI_Rat_astro_rdrp_2_repA,"Rat astrovirus amplicon sequencing of outbred rat from pet store A: small intestine, rat 2",AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3669-4110 (vs reference seq KT946731)",fastq,R2-SI_Rat_astro_rdrp_2_repA_R1.fastq.gz,R2-SI_Rat_astro_rdrp_2_repA_R2.fastq.gz,,
R2-SI,SAMN22605345,Rat fomite experiment,Pet store B rat,R2-SI_Rat_astro_rdrp_2_repB,"Rat astrovirus amplicon sequencing of outbred rat from pet store A: small intestine, rat 2",AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3669-4110 (vs reference seq KT946731)",fastq,R2-SI_Rat_astro_rdrp_2_repB_R1.fastq.gz,R2-SI_Rat_astro_rdrp_2_repB_R2.fastq.gz,,
R2-SI,SAMN22605345,Rat fomite experiment,Pet store B rat,R2-SI_mRNAseq,"mRNAseq of outbred rat from pet store A: small intestine, rat 2",RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R2-SI_mRNAseq_R1.fastq.gz,R2-SI_mRNAseq_R2.fastq.gz,,
R3-LIV,SAMN22605348,Rat fomite experiment,B6,R3-LIV_mRNAseq,mRNAseq of B6 mus musculus exposed to fomites from 2 outbred rats from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R3-LIV_mRNAseq_R1.fastq.gz,R3-LIV_mRNAseq_R2.fastq.gz,,
R3-SI,SAMN22605347,Rat fomite experiment,B6,R3-SI_Rat_astro_rdrp_1_repA,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3191-3723 (vs reference seq KT946731)",fastq,R3-SI_Rat_astro_rdrp_1_repA_R1.fastq.gz,R3-SI_Rat_astro_rdrp_1_repA_R2.fastq.gz,,
R3-SI,SAMN22605347,Rat fomite experiment,B6,R3-SI_Rat_astro_rdrp_1_repB,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3191-3723 (vs reference seq KT946731)",fastq,R3-SI_Rat_astro_rdrp_1_repB_R1.fastq.gz,R3-SI_Rat_astro_rdrp_1_repB_R2.fastq.gz,,
R3-SI,SAMN22605347,Rat fomite experiment,B6,R3-SI_Rat_astro_rdrp_2_repA,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3669-4110 (vs reference seq KT946731)",fastq,R3-SI_Rat_astro_rdrp_2_repA_R1.fastq.gz,R3-SI_Rat_astro_rdrp_2_repA_R2.fastq.gz,,
R3-SI,SAMN22605347,Rat fomite experiment,B6,R3-SI_Rat_astro_rdrp_2_repB,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3669-4110 (vs reference seq KT946731)",fastq,R3-SI_Rat_astro_rdrp_2_repB_R1.fastq.gz,R3-SI_Rat_astro_rdrp_2_repB_R2.fastq.gz,,
R3-SI,SAMN22605347,Rat fomite experiment,B6,R3-SI_mRNAseq,mRNAseq of B6 mus musculus exposed to fomites from 2 outbred rats from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R3-SI_mRNAseq_R1.fastq.gz,R3-SI_mRNAseq_R2.fastq.gz,,
R4-LIV,SAMN22605350,Rat fomite experiment,B6,R4-LIV_mRNAseq,mRNAseq of B6 mus musculus exposed to fomites from 2 outbred rats from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R4-LIV_mRNAseq_R1.fastq.gz,R4-LIV_mRNAseq_R2.fastq.gz,,
R4-SI,SAMN22605349,Rat fomite experiment,B6,R4-SI_Rat_astro_rdrp_1_repA,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3191-3723 (vs reference seq KT946731)",fastq,R4-SI_Rat_astro_rdrp_1_repA_R1.fastq.gz,R4-SI_Rat_astro_rdrp_1_repA_R2.fastq.gz,,
R4-SI,SAMN22605349,Rat fomite experiment,B6,R4-SI_Rat_astro_rdrp_1_repB,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3191-3723 (vs reference seq KT946731)",fastq,R4-SI_Rat_astro_rdrp_1_repB_R1.fastq.gz,R4-SI_Rat_astro_rdrp_1_repB_R2.fastq.gz,,
R4-SI,SAMN22605349,Rat fomite experiment,B6,R4-SI_Rat_astro_rdrp_2_repA,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3669-4110 (vs reference seq KT946731)",fastq,R4-SI_Rat_astro_rdrp_2_repA_R1.fastq.gz,R4-SI_Rat_astro_rdrp_2_repA_R2.fastq.gz,,
R4-SI,SAMN22605349,Rat fomite experiment,B6,R4-SI_Rat_astro_rdrp_2_repB,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3669-4110 (vs reference seq KT946731)",fastq,R4-SI_Rat_astro_rdrp_2_repB_R1.fastq.gz,R4-SI_Rat_astro_rdrp_2_repB_R2.fastq.gz,,
R4-SI,SAMN22605349,Rat fomite experiment,B6,R4-SI_mRNAseq,mRNAseq of B6 mus musculus exposed to fomites from 2 outbred rats from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R4-SI_mRNAseq_R1.fastq.gz,R4-SI_mRNAseq_R2.fastq.gz,,
R5-LIV,SAMN22605352,Rat fomite experiment,B6,R5-LIV_mRNAseq,mRNAseq of B6 mus musculus exposed to fomites from 2 outbred rats from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R5-LIV_mRNAseq_R1.fastq.gz,R5-LIV_mRNAseq_R2.fastq.gz,,
R5-SI,SAMN22605351,Rat fomite experiment,B6,R5-SI_Rat_astro_rdrp_1_repA,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3191-3723 (vs reference seq KT946731)",fastq,R5-SI_Rat_astro_rdrp_1_repA_R1.fastq.gz,R5-SI_Rat_astro_rdrp_1_repA_R2.fastq.gz,,
R5-SI,SAMN22605351,Rat fomite experiment,B6,R5-SI_Rat_astro_rdrp_1_repB,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3191-3723 (vs reference seq KT946731)",fastq,R5-SI_Rat_astro_rdrp_1_repB_R1.fastq.gz,R5-SI_Rat_astro_rdrp_1_repB_R2.fastq.gz,,
R5-SI,SAMN22605351,Rat fomite experiment,B6,R5-SI_Rat_astro_rdrp_2_repA,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3669-4110 (vs reference seq KT946731)",fastq,R5-SI_Rat_astro_rdrp_2_repA_R1.fastq.gz,R5-SI_Rat_astro_rdrp_2_repA_R2.fastq.gz,,
R5-SI,SAMN22605351,Rat fomite experiment,B6,R5-SI_Rat_astro_rdrp_2_repB,Rat astrovirus amplicon sequencing of B6 mus musculus exposed to fomites from outbred rats from pet store A: small intestine ,AMPLICON,METAGENOMIC,PCR,paired,ILLUMINA,Illumina MiSeq,"Primer set targeting rat astrovirus ORF1b, bp 3669-4110 (vs reference seq KT946731)",fastq,R5-SI_Rat_astro_rdrp_2_repB_R1.fastq.gz,R5-SI_Rat_astro_rdrp_2_repB_R2.fastq.gz,,
R5-SI,SAMN22605351,Rat fomite experiment,B6,R5-SI_mRNAseq,mRNAseq of B6 mus musculus exposed to fomites from 2 outbred rats from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R5-SI_mRNAseq_R1.fastq.gz,R5-SI_mRNAseq_R2.fastq.gz,,
R6-LIV,SAMN22605354,Rat fomite experiment,IFNLAR-/-,R6-LIV_mRNAseq,mRNAseq of IFNLAR-/- mus musculus exposed to fomites from 2 outbred rats from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R6-LIV_mRNAseq_R1.fastq.gz,R6-LIV_mRNAseq_R2.fastq.gz,,
R6-SI,SAMN22605353,Rat fomite experiment,IFNLAR-/-,R6-SI_mRNAseq,mRNAseq of IFNLAR-/- mus musculus exposedto fomites from 2 outbred rats from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R6-SI_mRNAseq_R1.fastq.gz,R6-SI_mRNAseq_R2.fastq.gz,,
R7-LIV,SAMN22605356,Rat fomite experiment,IFNLAR-/-,R7-LIV_mRNAseq,mRNAseq of IFNLAR-/- mus musculus exposed to fomites from 2 outbred rats from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R7-LIV_mRNAseq_R1.fastq.gz,R7-LIV_mRNAseq_R2.fastq.gz,,
R7-SI,SAMN22605355,Rat fomite experiment,IFNLAR-/-,R7-SI_mRNAseq,mRNAseq of IFNLAR-/- mus musculus exposedto fomites from 2 outbred rats from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R7-SI_mRNAseq_R1.fastq.gz,R7-SI_mRNAseq_R2.fastq.gz,,
R8-LIV,SAMN22605358,Rat fomite experiment,IFNLAR-/-,R8-LIV_mRNAseq,mRNAseq of IFNLAR-/- mus musculus exposed to fomites from 2 outbred rats from pet store A: liver,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R8-LIV_mRNAseq_R1.fastq.gz,R8-LIV_mRNAseq_R2.fastq.gz,,
R8-SI,SAMN22605357,Rat fomite experiment,IFNLAR-/-,R8-SI_mRNAseq,mRNAseq of IFNLAR-/- mus musculus exposedto fomites from 2 outbred rats from pet store A: small intestine,RNA-Seq,METATRANSCRIPTOMIC,PolyA,paired,ILLUMINA,Illumina NovaSeq 6000,"PolyA selection, 2x150 bp paired end reads",fastq,R8-SI_mRNAseq_R1.fastq.gz,R8-SI_mRNAseq_R2.fastq.gz,,